Query 039424
Match_columns 203
No_of_seqs 137 out of 1535
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:33:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039424.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039424hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02674 adenylate kinase 99.9 4.6E-23 1E-27 155.3 15.7 185 1-198 36-243 (244)
2 TIGR01351 adk adenylate kinase 99.9 1.7E-22 3.7E-27 150.9 15.4 183 1-198 4-209 (210)
3 PRK00279 adk adenylate kinase; 99.9 2.5E-22 5.4E-27 150.6 15.6 187 1-200 5-214 (215)
4 PRK14531 adenylate kinase; Pro 99.9 8.5E-22 1.8E-26 144.1 13.2 168 1-198 7-182 (183)
5 PRK14526 adenylate kinase; Pro 99.9 2E-21 4.3E-26 144.4 14.9 184 1-201 5-210 (211)
6 PRK14532 adenylate kinase; Pro 99.9 3.7E-21 8E-26 141.4 14.5 175 1-200 5-187 (188)
7 PLN02459 probable adenylate ki 99.9 3.3E-21 7.1E-26 145.9 14.0 182 1-199 34-250 (261)
8 PRK14529 adenylate kinase; Pro 99.9 9.2E-21 2E-25 141.3 15.1 185 1-198 5-222 (223)
9 TIGR01359 UMP_CMP_kin_fam UMP- 99.9 1.1E-20 2.4E-25 138.3 15.3 173 1-198 4-182 (183)
10 PRK14530 adenylate kinase; Pro 99.9 1.3E-20 2.7E-25 141.3 15.8 185 1-200 8-213 (215)
11 PRK14527 adenylate kinase; Pro 99.9 1.6E-20 3.4E-25 138.3 14.1 173 1-198 11-190 (191)
12 PTZ00088 adenylate kinase 1; P 99.9 1.2E-20 2.5E-25 141.8 13.1 181 1-198 11-229 (229)
13 PRK06762 hypothetical protein; 99.8 1.1E-19 2.4E-24 131.0 15.4 155 1-199 7-163 (166)
14 PRK13808 adenylate kinase; Pro 99.8 6.8E-20 1.5E-24 143.3 14.6 181 1-201 5-194 (333)
15 TIGR03574 selen_PSTK L-seryl-t 99.8 4.9E-19 1.1E-23 135.6 17.5 160 1-199 4-168 (249)
16 PRK14528 adenylate kinase; Pro 99.8 1.4E-19 3E-24 132.6 13.8 172 1-197 6-185 (186)
17 TIGR01360 aden_kin_iso1 adenyl 99.8 1.2E-19 2.6E-24 133.2 13.2 174 1-201 8-188 (188)
18 COG3265 GntK Gluconate kinase 99.8 6.5E-19 1.4E-23 120.2 15.6 158 2-201 1-160 (161)
19 PRK02496 adk adenylate kinase; 99.8 2E-19 4.4E-24 131.7 14.0 170 1-199 6-183 (184)
20 PLN02200 adenylate kinase fami 99.8 2.7E-19 5.9E-24 135.2 14.2 171 1-200 48-224 (234)
21 KOG3079 Uridylate kinase/adeny 99.8 1.4E-18 2.9E-23 122.8 15.6 174 1-200 13-193 (195)
22 COG0703 AroK Shikimate kinase 99.8 5.5E-19 1.2E-23 125.2 13.4 159 1-201 7-169 (172)
23 cd01428 ADK Adenylate kinase ( 99.8 3.6E-19 7.8E-24 131.4 12.5 177 1-190 4-194 (194)
24 PLN02842 nucleotide kinase 99.8 6.3E-19 1.4E-23 144.2 13.3 182 1-200 2-202 (505)
25 PF13671 AAA_33: AAA domain; P 99.8 2E-19 4.4E-24 126.4 8.9 119 1-134 4-122 (143)
26 TIGR01313 therm_gnt_kin carboh 99.8 4.8E-18 1E-22 122.1 15.5 160 1-199 3-162 (163)
27 cd00227 CPT Chloramphenicol (C 99.8 5.3E-18 1.1E-22 123.2 15.0 161 1-198 7-174 (175)
28 COG0645 Predicted kinase [Gene 99.8 3.2E-18 7E-23 119.9 12.8 143 1-168 6-148 (170)
29 PRK01184 hypothetical protein; 99.8 5.8E-18 1.3E-22 124.0 14.4 172 1-201 6-179 (184)
30 COG0563 Adk Adenylate kinase a 99.8 1.3E-17 2.9E-22 120.6 14.1 165 1-198 5-177 (178)
31 PRK11545 gntK gluconate kinase 99.8 2.8E-17 6E-22 117.9 15.7 161 2-202 1-162 (163)
32 PRK13948 shikimate kinase; Pro 99.8 1.2E-17 2.5E-22 121.4 13.6 158 1-200 15-175 (182)
33 PHA02530 pseT polynucleotide k 99.8 9.5E-18 2.1E-22 131.9 14.0 157 1-189 7-171 (300)
34 COG4088 Predicted nucleotide k 99.8 1.8E-17 3.9E-22 119.3 13.8 163 1-198 6-171 (261)
35 KOG3354 Gluconate kinase [Carb 99.8 3E-17 6.5E-22 112.7 13.7 163 1-199 17-187 (191)
36 PRK13946 shikimate kinase; Pro 99.8 2E-17 4.4E-22 121.1 13.7 160 1-201 15-177 (184)
37 PF07931 CPT: Chloramphenicol 99.8 2E-17 4.3E-22 118.8 11.9 166 1-199 6-174 (174)
38 PRK00625 shikimate kinase; Pro 99.7 5.7E-17 1.2E-21 117.0 13.2 159 1-198 5-171 (173)
39 cd02021 GntK Gluconate kinase 99.7 3.6E-17 7.9E-22 115.9 11.9 146 1-181 4-150 (150)
40 COG0283 Cmk Cytidylate kinase 99.7 1.2E-16 2.7E-21 116.1 14.6 174 1-199 9-218 (222)
41 PRK00081 coaE dephospho-CoA ki 99.7 2.6E-17 5.7E-22 121.3 10.9 167 1-200 7-193 (194)
42 PRK13947 shikimate kinase; Pro 99.7 4.5E-17 9.7E-22 117.9 11.7 159 1-200 6-168 (171)
43 PRK05057 aroK shikimate kinase 99.7 1.8E-16 3.8E-21 114.7 14.2 158 1-200 9-171 (172)
44 PRK13949 shikimate kinase; Pro 99.7 1.4E-16 3E-21 114.9 13.5 155 1-198 6-169 (169)
45 PRK00131 aroK shikimate kinase 99.7 1.8E-16 3.8E-21 115.0 13.8 162 1-201 9-172 (175)
46 PRK14730 coaE dephospho-CoA ki 99.7 6.3E-17 1.4E-21 119.2 11.4 167 1-199 6-193 (195)
47 PRK14021 bifunctional shikimat 99.7 3.7E-16 8E-21 131.3 15.8 163 1-200 11-176 (542)
48 PRK14733 coaE dephospho-CoA ki 99.7 1.2E-16 2.6E-21 117.8 10.2 172 1-201 11-199 (204)
49 PRK03839 putative kinase; Prov 99.7 1.7E-16 3.7E-21 115.8 10.9 150 1-201 5-154 (180)
50 PF01202 SKI: Shikimate kinase 99.7 5.4E-16 1.2E-20 110.8 13.1 154 5-199 1-158 (158)
51 COG1102 Cmk Cytidylate kinase 99.7 8.8E-16 1.9E-20 106.5 12.9 162 1-201 5-173 (179)
52 COG1936 Predicted nucleotide k 99.7 1.6E-16 3.5E-21 111.6 9.1 149 1-200 5-156 (180)
53 PF08433 KTI12: Chromatin asso 99.7 8.5E-16 1.8E-20 118.2 13.7 159 1-195 6-170 (270)
54 PRK05537 bifunctional sulfate 99.7 4.6E-16 1E-20 130.9 12.8 160 1-200 397-562 (568)
55 PTZ00451 dephospho-CoA kinase; 99.7 5E-16 1.1E-20 117.5 11.1 170 1-201 6-208 (244)
56 PLN02422 dephospho-CoA kinase 99.7 6.1E-16 1.3E-20 116.0 11.5 168 1-201 6-195 (232)
57 PLN02199 shikimate kinase 99.7 1.8E-15 3.8E-20 116.1 13.9 160 1-200 107-288 (303)
58 PRK13973 thymidylate kinase; P 99.7 7.9E-15 1.7E-19 109.7 16.0 175 1-200 8-206 (213)
59 TIGR00455 apsK adenylylsulfate 99.7 4.4E-16 9.5E-21 114.0 8.8 157 1-198 23-184 (184)
60 PRK10078 ribose 1,5-bisphospho 99.7 9.9E-16 2.2E-20 112.3 10.6 168 1-201 7-177 (186)
61 PRK03731 aroL shikimate kinase 99.7 3.5E-15 7.5E-20 108.0 13.3 162 1-200 7-170 (171)
62 COG0529 CysC Adenylylsulfate k 99.7 2.4E-15 5.1E-20 105.9 11.9 160 1-202 28-193 (197)
63 TIGR03575 selen_PSTK_euk L-ser 99.7 4.7E-15 1E-19 116.9 14.9 94 71-182 117-211 (340)
64 PF00406 ADK: Adenylate kinase 99.7 1.1E-15 2.3E-20 108.5 10.0 132 1-164 1-136 (151)
65 PRK09825 idnK D-gluconate kina 99.7 8.6E-15 1.9E-19 106.2 14.8 160 1-200 8-168 (176)
66 PRK08154 anaerobic benzoate ca 99.7 7.1E-15 1.5E-19 115.7 15.4 160 1-200 138-301 (309)
67 TIGR01663 PNK-3'Pase polynucle 99.7 6.3E-15 1.4E-19 122.3 15.5 98 1-133 374-471 (526)
68 cd00464 SK Shikimate kinase (S 99.6 3E-15 6.5E-20 106.4 11.9 146 1-188 4-153 (154)
69 PRK04182 cytidylate kinase; Pr 99.6 1.1E-15 2.3E-20 111.4 9.4 163 1-200 5-173 (180)
70 TIGR00152 dephospho-CoA kinase 99.6 4.1E-15 8.8E-20 109.3 11.7 163 1-195 4-187 (188)
71 PRK03846 adenylylsulfate kinas 99.6 3.3E-15 7.1E-20 110.6 11.1 160 1-201 29-193 (198)
72 PRK06217 hypothetical protein; 99.6 3.8E-15 8.2E-20 109.0 11.3 162 1-200 6-179 (183)
73 PRK14732 coaE dephospho-CoA ki 99.6 4.3E-15 9.2E-20 109.5 11.0 168 1-201 4-191 (196)
74 PRK00889 adenylylsulfate kinas 99.6 4.5E-15 9.7E-20 107.8 10.9 158 1-201 9-171 (175)
75 COG0237 CoaE Dephospho-CoA kin 99.6 2.2E-15 4.7E-20 110.8 9.1 166 1-200 7-192 (201)
76 PRK14734 coaE dephospho-CoA ki 99.6 1.4E-15 3.1E-20 112.5 8.1 168 1-201 6-195 (200)
77 PRK05541 adenylylsulfate kinas 99.6 2.1E-15 4.6E-20 109.6 8.9 155 1-199 12-171 (176)
78 PRK14731 coaE dephospho-CoA ki 99.6 5.1E-15 1.1E-19 110.3 10.2 167 1-200 10-202 (208)
79 TIGR02173 cyt_kin_arch cytidyl 99.6 1.7E-14 3.7E-19 104.2 12.7 156 1-198 5-170 (171)
80 KOG3078 Adenylate kinase [Nucl 99.6 5.3E-15 1.1E-19 109.6 9.8 183 1-200 20-224 (235)
81 PRK08356 hypothetical protein; 99.6 2.4E-14 5.2E-19 105.8 13.2 176 1-201 10-193 (195)
82 PF01583 APS_kinase: Adenylyls 99.6 1.1E-14 2.3E-19 102.5 10.1 105 1-126 7-116 (156)
83 KOG3220 Similar to bacterial d 99.6 3.2E-14 6.9E-19 102.1 12.5 168 1-201 6-195 (225)
84 PF01121 CoaE: Dephospho-CoA k 99.6 1.5E-15 3.2E-20 110.2 5.2 156 1-189 5-180 (180)
85 cd02022 DPCK Dephospho-coenzym 99.6 5.7E-15 1.2E-19 107.6 8.0 152 1-183 4-175 (179)
86 PRK12339 2-phosphoglycerate ki 99.6 9.3E-14 2E-18 102.3 13.6 123 1-133 8-143 (197)
87 PRK05506 bifunctional sulfate 99.6 4.1E-14 8.8E-19 121.4 12.3 159 1-200 465-628 (632)
88 PRK04040 adenylate kinase; Pro 99.6 6.6E-14 1.4E-18 102.5 11.2 164 1-198 7-187 (188)
89 cd01672 TMPK Thymidine monopho 99.5 5.4E-13 1.2E-17 98.6 16.0 177 1-199 5-199 (200)
90 PRK00698 tmk thymidylate kinas 99.5 4E-13 8.7E-18 99.9 15.2 177 1-200 8-202 (205)
91 COG4639 Predicted kinase [Gene 99.5 6.6E-13 1.4E-17 91.7 14.6 114 1-133 7-120 (168)
92 PRK13975 thymidylate kinase; P 99.5 4.2E-13 9.1E-18 99.2 14.0 172 1-200 7-190 (196)
93 TIGR02322 phosphon_PhnN phosph 99.5 2.4E-13 5.2E-18 99.1 12.4 96 74-200 83-178 (179)
94 PRK13477 bifunctional pantoate 99.5 3.9E-13 8.6E-18 111.2 15.0 174 1-200 289-503 (512)
95 KOG3347 Predicted nucleotide k 99.5 5.1E-14 1.1E-18 96.4 7.9 102 1-133 12-116 (176)
96 PRK13951 bifunctional shikimat 99.5 2.3E-13 5E-18 112.9 13.3 149 1-195 5-156 (488)
97 PRK03333 coaE dephospho-CoA ki 99.5 1E-13 2.2E-18 112.4 10.3 167 1-200 6-192 (395)
98 cd02027 APSK Adenosine 5'-phos 99.5 1E-13 2.2E-18 98.0 8.9 107 1-128 4-115 (149)
99 PRK08233 hypothetical protein; 99.5 1.4E-13 3E-18 100.4 9.6 162 1-201 8-178 (182)
100 PRK11860 bifunctional 3-phosph 99.5 1.1E-12 2.3E-17 113.2 16.1 175 1-201 447-656 (661)
101 PRK12338 hypothetical protein; 99.5 1.1E-12 2.3E-17 102.4 14.6 180 1-200 9-204 (319)
102 PRK14737 gmk guanylate kinase; 99.5 9E-13 1.9E-17 96.4 12.3 106 66-200 79-184 (186)
103 PRK05416 glmZ(sRNA)-inactivati 99.5 9.2E-13 2E-17 102.2 12.9 145 1-200 11-160 (288)
104 TIGR00017 cmk cytidylate kinas 99.5 1.4E-12 3.1E-17 97.5 13.4 171 1-197 7-216 (217)
105 PRK00023 cmk cytidylate kinase 99.5 1.7E-12 3.7E-17 97.8 13.2 33 1-33 9-41 (225)
106 PRK13974 thymidylate kinase; P 99.5 2.5E-12 5.4E-17 96.2 13.9 110 70-200 84-206 (212)
107 PRK08118 topology modulation p 99.5 5.2E-13 1.1E-17 96.1 8.9 95 1-131 6-100 (167)
108 COG0125 Tmk Thymidylate kinase 99.4 4.7E-12 1E-16 93.6 13.9 172 1-200 8-203 (208)
109 cd02020 CMPK Cytidine monophos 99.4 1.3E-12 2.8E-17 92.0 10.2 139 1-182 4-147 (147)
110 PRK12269 bifunctional cytidyla 99.4 5.2E-12 1.1E-16 110.4 15.8 73 111-201 209-286 (863)
111 PF02223 Thymidylate_kin: Thym 99.4 1E-12 2.3E-17 96.3 9.7 166 1-194 1-186 (186)
112 TIGR00041 DTMP_kinase thymidyl 99.4 4.4E-12 9.5E-17 93.7 12.9 166 1-194 8-195 (195)
113 cd02030 NDUO42 NADH:Ubiquinone 99.4 7.5E-12 1.6E-16 94.1 14.3 25 1-25 4-28 (219)
114 PF06414 Zeta_toxin: Zeta toxi 99.4 2.2E-12 4.8E-17 95.6 11.1 120 1-131 20-142 (199)
115 PRK12337 2-phosphoglycerate ki 99.4 3.9E-12 8.6E-17 103.3 13.3 129 1-133 260-407 (475)
116 PRK14738 gmk guanylate kinase; 99.4 3.2E-12 6.8E-17 95.2 11.5 101 71-200 93-194 (206)
117 COG0194 Gmk Guanylate kinase [ 99.4 3.9E-13 8.4E-18 96.0 5.6 167 1-200 9-182 (191)
118 PRK09518 bifunctional cytidyla 99.4 8.5E-12 1.8E-16 108.5 14.8 34 1-34 6-39 (712)
119 PLN02924 thymidylate kinase 99.4 7.8E-12 1.7E-16 93.7 12.7 169 1-200 21-203 (220)
120 PRK07261 topology modulation p 99.4 9.4E-13 2E-17 95.2 7.4 96 1-131 5-100 (171)
121 PRK00300 gmk guanylate kinase; 99.4 2.2E-12 4.7E-17 96.0 9.4 101 71-201 85-185 (205)
122 PF01591 6PF2K: 6-phosphofruct 99.4 5E-12 1.1E-16 94.2 11.0 150 1-165 17-173 (222)
123 TIGR03263 guanyl_kin guanylate 99.4 8.4E-12 1.8E-16 91.0 11.1 165 1-199 6-179 (180)
124 PRK07933 thymidylate kinase; V 99.4 4.6E-11 1E-15 89.3 14.8 115 73-198 80-211 (213)
125 COG3709 Uncharacterized compon 99.3 4.4E-12 9.6E-17 88.2 7.5 95 73-199 86-181 (192)
126 cd01673 dNK Deoxyribonucleosid 99.3 3.1E-11 6.7E-16 89.0 12.6 25 1-25 4-28 (193)
127 smart00072 GuKc Guanylate kina 99.3 3E-12 6.6E-17 93.7 6.8 167 1-201 7-183 (184)
128 PF03668 ATP_bind_2: P-loop AT 99.3 2.3E-11 5.1E-16 92.9 11.7 145 1-199 6-155 (284)
129 PRK13976 thymidylate kinase; P 99.3 7.6E-11 1.7E-15 87.7 13.4 171 1-200 5-201 (209)
130 COG2074 2-phosphoglycerate kin 99.3 3.9E-11 8.4E-16 89.3 10.8 123 1-133 94-233 (299)
131 PF13207 AAA_17: AAA domain; P 99.3 2.8E-12 6E-17 87.4 3.2 31 1-31 4-34 (121)
132 PRK05480 uridine/cytidine kina 99.2 1.1E-10 2.5E-15 87.1 10.9 32 1-32 11-45 (209)
133 PRK04220 2-phosphoglycerate ki 99.2 3.6E-10 7.8E-15 87.6 13.5 124 1-133 97-238 (301)
134 COG3896 Chloramphenicol 3-O-ph 99.2 7.1E-10 1.5E-14 77.0 13.2 169 1-199 28-204 (205)
135 PF08303 tRNA_lig_kinase: tRNA 99.2 9.7E-10 2.1E-14 77.2 13.9 99 2-132 5-120 (168)
136 PRK06547 hypothetical protein; 99.2 5.2E-11 1.1E-15 86.0 7.5 118 1-133 20-141 (172)
137 COG2019 AdkA Archaeal adenylat 99.1 5.1E-10 1.1E-14 78.5 9.7 171 1-200 9-188 (189)
138 COG1428 Deoxynucleoside kinase 99.1 1.6E-09 3.6E-14 79.0 12.7 26 107-133 125-150 (216)
139 PF00625 Guanylate_kin: Guanyl 99.1 1E-10 2.3E-15 85.5 6.6 101 70-200 82-182 (183)
140 KOG3062 RNA polymerase II elon 99.1 8.1E-10 1.8E-14 81.0 10.0 162 1-195 6-175 (281)
141 cd02024 NRK1 Nicotinamide ribo 99.1 5.8E-10 1.3E-14 81.4 7.8 33 1-33 4-37 (187)
142 COG1660 Predicted P-loop-conta 99.0 5.5E-09 1.2E-13 78.3 11.5 146 1-199 6-156 (286)
143 PRK06696 uridine kinase; Valid 99.0 8.4E-11 1.8E-15 88.6 1.8 33 1-33 27-64 (223)
144 PRK07667 uridine kinase; Provi 99.0 1.3E-09 2.8E-14 80.3 7.9 32 1-32 22-58 (193)
145 PLN02772 guanylate kinase 99.0 1.9E-09 4.1E-14 86.3 9.1 107 66-200 211-318 (398)
146 cd02023 UMPK Uridine monophosp 99.0 6.4E-09 1.4E-13 77.0 11.2 33 1-33 4-39 (198)
147 PF13238 AAA_18: AAA domain; P 99.0 4.1E-10 8.9E-15 77.2 4.3 45 78-133 70-115 (129)
148 PTZ00301 uridine kinase; Provi 99.0 9.6E-09 2.1E-13 76.5 10.5 32 1-32 8-46 (210)
149 COG0572 Udk Uridine kinase [Nu 98.9 1.2E-08 2.6E-13 75.3 10.4 33 1-33 13-48 (218)
150 TIGR00235 udk uridine kinase. 98.9 2.2E-08 4.8E-13 74.6 11.9 31 1-31 11-44 (207)
151 COG4185 Uncharacterized protei 98.9 4.1E-09 8.8E-14 73.4 7.1 149 1-183 7-158 (187)
152 PTZ00322 6-phosphofructo-2-kin 98.9 1.6E-08 3.6E-13 87.5 11.7 119 1-131 220-347 (664)
153 KOG0635 Adenosine 5'-phosphosu 98.9 2.9E-08 6.3E-13 68.6 9.4 160 1-201 36-201 (207)
154 KOG4238 Bifunctional ATP sulfu 98.8 1.4E-08 3E-13 79.6 6.8 162 1-202 55-222 (627)
155 PRK09270 nucleoside triphospha 98.8 3.4E-08 7.3E-13 74.8 8.3 31 1-31 38-74 (229)
156 cd02026 PRK Phosphoribulokinas 98.8 7.3E-08 1.6E-12 74.7 9.7 31 1-31 4-37 (273)
157 PLN02348 phosphoribulokinase 98.7 5E-08 1.1E-12 78.3 7.9 31 1-31 54-104 (395)
158 PLN02165 adenylate isopentenyl 98.7 8.5E-08 1.8E-12 75.5 9.0 30 1-30 48-77 (334)
159 cd02025 PanK Pantothenate kina 98.7 9E-08 1.9E-12 72.0 7.7 32 1-32 4-42 (220)
160 PRK07429 phosphoribulokinase; 98.7 1.4E-07 3.1E-12 74.7 9.2 31 1-31 13-46 (327)
161 PRK06761 hypothetical protein; 98.7 7.7E-08 1.7E-12 74.4 7.4 122 1-133 8-130 (282)
162 KOG3877 NADH:ubiquinone oxidor 98.7 6.1E-07 1.3E-11 68.1 11.4 128 1-133 76-241 (393)
163 KOG4622 Predicted nucleotide k 98.6 6.3E-07 1.4E-11 64.7 9.8 85 83-183 96-180 (291)
164 cd02028 UMPK_like Uridine mono 98.6 1.7E-07 3.6E-12 68.3 6.8 33 1-33 4-41 (179)
165 PF00485 PRK: Phosphoribulokin 98.6 1.2E-07 2.7E-12 69.9 5.4 33 1-33 4-45 (194)
166 PRK05439 pantothenate kinase; 98.5 2.2E-07 4.8E-12 72.9 5.7 33 1-33 91-130 (311)
167 PF01745 IPT: Isopentenyl tran 98.5 4.6E-07 9.9E-12 66.5 6.4 124 1-132 6-140 (233)
168 PHA00729 NTP-binding motif con 98.5 7.6E-07 1.7E-11 66.6 7.4 21 1-21 22-42 (226)
169 PLN02318 phosphoribulokinase/u 98.4 2.1E-06 4.6E-11 72.3 9.9 31 1-31 70-101 (656)
170 KOG0707 Guanylate kinase [Nucl 98.4 1.2E-06 2.6E-11 64.9 6.8 171 1-200 42-221 (231)
171 PRK00091 miaA tRNA delta(2)-is 98.4 1.5E-06 3.2E-11 68.4 7.6 30 1-30 9-38 (307)
172 PHA03132 thymidine kinase; Pro 98.3 6E-06 1.3E-10 69.7 10.5 26 1-26 262-287 (580)
173 TIGR00554 panK_bact pantothena 98.3 5.1E-07 1.1E-11 70.4 3.6 32 1-32 67-105 (290)
174 cd02019 NK Nucleoside/nucleoti 98.3 3.8E-07 8.2E-12 55.7 2.2 20 1-20 4-23 (69)
175 KOG3308 Uncharacterized protei 98.3 5E-06 1.1E-10 60.4 7.7 33 1-33 9-42 (225)
176 cd00071 GMPK Guanosine monopho 98.3 8.9E-07 1.9E-11 61.6 3.7 21 1-21 4-24 (137)
177 PF03029 ATP_bind_1: Conserved 98.3 2.4E-06 5.3E-11 64.9 6.3 30 1-30 1-35 (238)
178 PRK09169 hypothetical protein; 98.2 9.6E-06 2.1E-10 76.3 10.7 105 1-133 2115-2223(2316)
179 PRK09087 hypothetical protein; 98.2 9.6E-06 2.1E-10 61.3 9.1 115 1-129 49-164 (226)
180 PF00004 AAA: ATPase family as 98.2 5.2E-07 1.1E-11 61.9 2.0 28 1-28 3-30 (132)
181 KOG3327 Thymidylate kinase/ade 98.2 7.6E-06 1.6E-10 58.6 7.6 106 73-200 81-195 (208)
182 cd03115 SRP The signal recogni 98.2 1.7E-05 3.7E-10 57.3 9.5 31 1-31 5-40 (173)
183 KOG0744 AAA+-type ATPase [Post 98.2 2.3E-06 5E-11 66.5 4.8 23 1-23 182-204 (423)
184 PF13189 Cytidylate_kin2: Cyti 98.2 9E-06 2E-10 59.2 7.4 119 1-133 4-137 (179)
185 PRK08084 DNA replication initi 98.1 2.5E-05 5.4E-10 59.4 9.0 30 1-30 50-84 (235)
186 KOG1533 Predicted GTPase [Gene 98.1 2.2E-05 4.8E-10 58.5 8.1 28 1-28 7-39 (290)
187 PRK14974 cell division protein 98.1 3.5E-05 7.6E-10 61.4 9.6 31 1-31 145-180 (336)
188 PRK05800 cobU adenosylcobinami 98.1 5.2E-06 1.1E-10 59.9 4.1 30 1-30 6-37 (170)
189 PRK00771 signal recognition pa 98.0 3.5E-05 7.5E-10 63.6 8.7 32 1-32 100-136 (437)
190 PF00448 SRP54: SRP54-type pro 98.0 1.8E-05 3.9E-10 58.4 5.6 32 1-32 6-42 (196)
191 PRK15453 phosphoribulokinase; 97.9 3.8E-06 8.3E-11 64.7 1.7 32 1-32 10-46 (290)
192 PRK06893 DNA replication initi 97.9 7E-05 1.5E-09 56.7 8.4 28 1-28 44-76 (229)
193 KOG1384 tRNA delta(2)-isopente 97.9 6.1E-05 1.3E-09 58.8 7.9 126 1-132 12-160 (348)
194 PF13173 AAA_14: AAA domain 97.9 8.8E-05 1.9E-09 50.9 8.1 31 1-31 7-41 (128)
195 PRK06620 hypothetical protein; 97.9 4.9E-05 1.1E-09 56.9 7.1 27 1-27 49-75 (214)
196 TIGR01425 SRP54_euk signal rec 97.9 7E-05 1.5E-09 61.4 8.3 31 1-31 105-140 (429)
197 KOG1969 DNA replication checkp 97.9 7.1E-05 1.5E-09 64.1 8.5 27 1-27 331-357 (877)
198 KOG0733 Nuclear AAA ATPase (VC 97.9 6.6E-05 1.4E-09 63.2 8.0 27 1-27 228-254 (802)
199 PF13401 AAA_22: AAA domain; P 97.9 3.2E-05 7E-10 53.0 5.4 20 1-20 9-28 (131)
200 PF05496 RuvB_N: Holliday junc 97.9 8.3E-06 1.8E-10 60.8 2.4 25 1-25 55-79 (233)
201 PRK08727 hypothetical protein; 97.9 0.0002 4.3E-09 54.4 9.9 31 1-31 46-81 (233)
202 cd02029 PRK_like Phosphoribulo 97.9 5.1E-06 1.1E-10 63.6 1.1 32 1-32 4-40 (277)
203 TIGR00064 ftsY signal recognit 97.9 0.00012 2.7E-09 56.8 8.8 31 1-31 77-112 (272)
204 COG1618 Predicted nucleotide k 97.8 7.9E-06 1.7E-10 57.4 1.7 20 1-20 10-29 (179)
205 PLN02748 tRNA dimethylallyltra 97.8 2.3E-05 4.9E-10 64.9 4.4 34 1-34 27-62 (468)
206 TIGR00174 miaA tRNA isopenteny 97.8 1.1E-05 2.5E-10 62.7 2.5 33 1-33 4-38 (287)
207 PF13521 AAA_28: AAA domain; P 97.8 8.3E-06 1.8E-10 58.4 1.5 30 1-33 4-33 (163)
208 PLN02840 tRNA dimethylallyltra 97.8 1.2E-05 2.5E-10 65.6 2.4 30 1-30 26-55 (421)
209 PRK12724 flagellar biosynthesi 97.8 0.00028 6E-09 57.7 10.1 32 1-32 228-265 (432)
210 TIGR00390 hslU ATP-dependent p 97.8 1.2E-05 2.5E-10 65.4 2.1 30 1-30 52-81 (441)
211 PRK05642 DNA replication initi 97.8 0.00018 3.8E-09 54.7 8.4 32 1-32 50-86 (234)
212 KOG2134 Polynucleotide kinase 97.8 3.3E-05 7.2E-10 61.3 4.5 95 2-131 275-369 (422)
213 smart00382 AAA ATPases associa 97.8 1.2E-05 2.7E-10 55.1 1.8 23 1-23 7-29 (148)
214 PHA02575 1 deoxynucleoside mon 97.8 2.5E-05 5.5E-10 58.2 3.5 34 1-35 5-39 (227)
215 PHA03136 thymidine kinase; Pro 97.8 0.0011 2.3E-08 53.3 12.7 25 109-134 192-216 (378)
216 TIGR00959 ffh signal recogniti 97.8 0.00029 6.4E-09 58.0 9.8 32 1-32 104-141 (428)
217 COG2256 MGS1 ATPase related to 97.7 1.9E-05 4E-10 63.3 2.7 31 1-31 53-83 (436)
218 PF02224 Cytidylate_kin: Cytid 97.7 0.00025 5.5E-09 50.0 8.1 90 78-196 59-157 (157)
219 COG5324 Uncharacterized conser 97.7 0.00032 6.9E-09 57.6 9.7 153 4-199 382-546 (758)
220 PRK05201 hslU ATP-dependent pr 97.7 1.4E-05 3.1E-10 64.9 2.1 29 1-29 55-83 (443)
221 PF07728 AAA_5: AAA domain (dy 97.7 1.2E-05 2.7E-10 55.8 1.5 24 1-24 4-27 (139)
222 KOG1534 Putative transcription 97.7 0.0002 4.4E-09 52.6 7.6 30 1-30 8-42 (273)
223 PRK10867 signal recognition pa 97.7 0.00038 8.3E-09 57.4 10.0 32 1-32 105-142 (433)
224 PRK14956 DNA polymerase III su 97.7 0.00026 5.5E-09 58.9 8.7 23 1-23 45-67 (484)
225 PRK12723 flagellar biosynthesi 97.7 0.00038 8.2E-09 56.6 9.2 31 1-31 179-218 (388)
226 KOG0730 AAA+-type ATPase [Post 97.7 0.00062 1.4E-08 57.8 10.6 27 1-27 473-499 (693)
227 PRK14962 DNA polymerase III su 97.7 0.00022 4.7E-09 59.6 8.0 22 1-22 41-62 (472)
228 smart00763 AAA_PrkA PrkA AAA d 97.7 2.1E-05 4.5E-10 62.8 1.8 22 1-22 83-104 (361)
229 TIGR01650 PD_CobS cobaltochela 97.6 2.7E-05 5.7E-10 61.5 2.1 25 1-25 69-93 (327)
230 PRK11889 flhF flagellar biosyn 97.6 0.00065 1.4E-08 55.1 9.9 31 1-31 246-281 (436)
231 PRK10416 signal recognition pa 97.6 0.00041 9E-09 55.1 8.7 31 1-31 119-154 (318)
232 CHL00181 cbbX CbbX; Provisiona 97.6 0.00038 8.2E-09 54.5 8.4 20 1-20 64-83 (287)
233 TIGR02640 gas_vesic_GvpN gas v 97.6 3.7E-05 8E-10 59.4 2.6 25 1-25 26-50 (262)
234 PRK05342 clpX ATP-dependent pr 97.6 3.2E-05 7E-10 63.4 2.3 29 1-29 113-141 (412)
235 TIGR00150 HI0065_YjeE ATPase, 97.6 4.3E-05 9.2E-10 52.6 2.4 23 1-23 27-49 (133)
236 PF07726 AAA_3: ATPase family 97.6 2.1E-05 4.6E-10 53.5 0.7 25 1-25 4-28 (131)
237 PRK13342 recombination factor 97.6 0.00049 1.1E-08 56.8 8.7 27 1-27 41-67 (413)
238 PRK14961 DNA polymerase III su 97.6 0.0011 2.4E-08 53.7 10.5 22 1-22 43-64 (363)
239 PF03266 NTPase_1: NTPase; In 97.5 3.7E-05 7.9E-10 55.4 1.6 20 1-20 4-23 (168)
240 cd00009 AAA The AAA+ (ATPases 97.5 5E-05 1.1E-09 52.5 2.2 20 1-20 24-43 (151)
241 TIGR00382 clpX endopeptidase C 97.5 5.1E-05 1.1E-09 62.0 2.5 28 1-28 121-148 (413)
242 PRK06835 DNA replication prote 97.5 0.00093 2E-08 53.3 9.5 34 1-34 188-226 (329)
243 PF13245 AAA_19: Part of AAA d 97.5 4.9E-05 1.1E-09 47.2 1.8 20 1-20 15-35 (76)
244 PRK14964 DNA polymerase III su 97.5 0.00088 1.9E-08 56.1 9.5 22 1-22 40-61 (491)
245 PRK14722 flhF flagellar biosyn 97.5 0.00055 1.2E-08 55.4 7.9 31 1-31 142-179 (374)
246 COG1072 CoaA Panthothenate kin 97.5 0.00027 5.9E-09 54.1 5.8 20 1-20 87-106 (283)
247 PRK08099 bifunctional DNA-bind 97.5 6.5E-05 1.4E-09 61.4 2.6 26 1-26 224-249 (399)
248 TIGR02880 cbbX_cfxQ probable R 97.5 0.00096 2.1E-08 52.2 8.9 20 1-20 63-82 (284)
249 TIGR02881 spore_V_K stage V sp 97.5 4.9E-05 1.1E-09 58.7 1.7 20 1-20 47-66 (261)
250 COG0324 MiaA tRNA delta(2)-iso 97.5 0.00019 4E-09 56.2 4.8 33 1-33 8-42 (308)
251 PF03215 Rad17: Rad17 cell cyc 97.4 8.4E-05 1.8E-09 62.6 2.6 26 1-26 50-75 (519)
252 PRK12726 flagellar biosynthesi 97.4 0.00077 1.7E-08 54.5 7.8 32 1-32 211-247 (407)
253 TIGR03420 DnaA_homol_Hda DnaA 97.4 0.0013 2.7E-08 49.5 8.8 30 1-30 43-77 (226)
254 PRK12402 replication factor C 97.4 0.0012 2.6E-08 52.8 9.0 20 1-20 41-60 (337)
255 PRK03992 proteasome-activating 97.4 8E-05 1.7E-09 60.8 2.3 27 1-27 170-196 (389)
256 cd01918 HprK_C HprK/P, the bif 97.4 8.8E-05 1.9E-09 52.0 2.2 29 1-30 19-47 (149)
257 PRK12377 putative replication 97.4 0.00056 1.2E-08 52.3 6.7 33 1-33 106-143 (248)
258 PLN02796 D-glycerate 3-kinase 97.4 7.1E-05 1.5E-09 59.5 1.8 31 1-31 105-140 (347)
259 PRK14960 DNA polymerase III su 97.4 0.002 4.3E-08 55.6 10.4 23 1-23 42-64 (702)
260 CHL00195 ycf46 Ycf46; Provisio 97.4 8.2E-05 1.8E-09 62.3 2.2 28 1-28 264-291 (489)
261 PRK06645 DNA polymerase III su 97.4 0.0012 2.6E-08 55.7 9.0 23 1-23 48-70 (507)
262 PRK14955 DNA polymerase III su 97.4 0.0014 3E-08 53.8 9.3 23 1-23 43-65 (397)
263 PRK12323 DNA polymerase III su 97.4 0.0018 3.9E-08 55.8 10.0 22 1-22 43-64 (700)
264 PHA02544 44 clamp loader, smal 97.4 0.0018 3.8E-08 51.4 9.5 24 1-24 48-71 (316)
265 TIGR01526 nadR_NMN_Atrans nico 97.4 0.00011 2.3E-09 58.6 2.4 26 1-26 167-192 (325)
266 PRK04195 replication factor C 97.4 0.00011 2.4E-09 61.8 2.6 27 1-27 44-70 (482)
267 PRK14949 DNA polymerase III su 97.4 0.0027 5.9E-08 56.5 11.1 23 1-23 43-65 (944)
268 PRK05896 DNA polymerase III su 97.4 0.0029 6.3E-08 54.2 10.8 22 1-22 43-64 (605)
269 PHA02244 ATPase-like protein 97.3 0.00011 2.4E-09 58.9 2.2 30 1-30 124-153 (383)
270 PRK08116 hypothetical protein; 97.3 0.0024 5.3E-08 49.5 9.6 33 1-33 119-156 (268)
271 TIGR01241 FtsH_fam ATP-depende 97.3 0.00012 2.7E-09 61.7 2.5 27 1-27 93-119 (495)
272 TIGR01242 26Sp45 26S proteasom 97.3 0.00014 2.9E-09 59.0 2.7 27 1-27 161-187 (364)
273 PRK14957 DNA polymerase III su 97.3 0.0021 4.5E-08 54.6 9.7 22 1-22 43-64 (546)
274 KOG0234 Fructose-6-phosphate 2 97.3 0.0054 1.2E-07 50.0 11.6 123 1-130 33-162 (438)
275 PHA03135 thymidine kinase; Pro 97.3 0.021 4.7E-07 45.4 14.6 19 1-19 15-33 (343)
276 PTZ00454 26S protease regulato 97.3 0.00014 3.1E-09 59.4 2.7 27 1-27 184-210 (398)
277 COG1223 Predicted ATPase (AAA+ 97.3 0.0026 5.6E-08 48.7 9.0 28 1-28 156-183 (368)
278 TIGR00635 ruvB Holliday juncti 97.3 0.00014 3.1E-09 57.3 2.6 24 1-24 35-58 (305)
279 cd00820 PEPCK_HprK Phosphoenol 97.3 0.00011 2.4E-09 48.6 1.6 28 1-30 20-47 (107)
280 PRK00080 ruvB Holliday junctio 97.3 0.00015 3.1E-09 58.0 2.5 24 1-24 56-79 (328)
281 PRK07003 DNA polymerase III su 97.3 0.0025 5.3E-08 55.8 10.0 23 1-23 43-65 (830)
282 PRK13341 recombination factor 97.3 0.0046 9.9E-08 54.4 11.8 29 1-29 57-85 (725)
283 PF05729 NACHT: NACHT domain 97.3 0.00011 2.5E-09 52.1 1.6 20 1-20 5-24 (166)
284 PF00308 Bac_DnaA: Bacterial d 97.3 0.0019 4.2E-08 48.6 8.3 34 1-34 39-79 (219)
285 TIGR03707 PPK2_P_aer polyphosp 97.3 0.0054 1.2E-07 46.3 10.6 106 1-134 36-160 (230)
286 PRK14958 DNA polymerase III su 97.3 0.0019 4.1E-08 54.6 9.0 23 1-23 43-65 (509)
287 KOG0743 AAA+-type ATPase [Post 97.3 0.00016 3.5E-09 58.8 2.5 27 1-27 240-266 (457)
288 PF00910 RNA_helicase: RNA hel 97.3 0.00012 2.7E-09 48.5 1.6 21 1-21 3-23 (107)
289 PF13555 AAA_29: P-loop contai 97.3 0.00015 3.2E-09 42.9 1.7 18 1-18 28-45 (62)
290 TIGR00362 DnaA chromosomal rep 97.3 0.0036 7.9E-08 51.5 10.3 33 1-33 141-180 (405)
291 COG4619 ABC-type uncharacteriz 97.3 0.00015 3.1E-09 51.7 1.8 19 1-19 34-52 (223)
292 PLN00020 ribulose bisphosphate 97.3 0.00019 4.1E-09 57.6 2.6 33 1-33 153-187 (413)
293 COG0541 Ffh Signal recognition 97.3 0.0017 3.6E-08 52.9 8.0 33 1-33 105-142 (451)
294 TIGR02782 TrbB_P P-type conjug 97.3 0.0015 3.3E-08 51.5 7.7 110 1-130 137-251 (299)
295 PRK05703 flhF flagellar biosyn 97.2 0.0015 3.2E-08 54.0 7.8 31 1-31 226-263 (424)
296 PTZ00361 26 proteosome regulat 97.2 0.00019 4.2E-09 59.2 2.6 26 1-26 222-247 (438)
297 PRK00149 dnaA chromosomal repl 97.2 0.0052 1.1E-07 51.3 11.1 33 1-33 153-192 (450)
298 COG1419 FlhF Flagellar GTP-bin 97.2 0.0036 7.7E-08 50.8 9.6 32 1-32 208-246 (407)
299 PRK12422 chromosomal replicati 97.2 0.0049 1.1E-07 51.3 10.7 32 1-32 146-182 (445)
300 COG1855 ATPase (PilT family) [ 97.2 0.00015 3.1E-09 59.2 1.7 20 1-20 268-287 (604)
301 COG1126 GlnQ ABC-type polar am 97.2 0.00015 3.1E-09 53.7 1.5 17 1-17 33-49 (240)
302 KOG1970 Checkpoint RAD17-RFC c 97.2 0.00017 3.6E-09 60.1 2.0 26 1-26 115-140 (634)
303 PRK09111 DNA polymerase III su 97.2 0.0022 4.7E-08 55.2 8.7 23 1-23 51-73 (598)
304 PRK14723 flhF flagellar biosyn 97.2 0.0028 6E-08 55.7 9.4 31 1-31 190-227 (767)
305 PF07724 AAA_2: AAA domain (Cd 97.2 0.00015 3.2E-09 52.4 1.4 30 1-30 8-43 (171)
306 cd01130 VirB11-like_ATPase Typ 97.2 0.0013 2.8E-08 48.1 6.4 61 71-133 90-150 (186)
307 PLN03046 D-glycerate 3-kinase; 97.2 0.00016 3.6E-09 58.8 1.7 31 1-31 217-252 (460)
308 TIGR03499 FlhF flagellar biosy 97.2 0.00061 1.3E-08 53.3 4.9 31 1-31 199-236 (282)
309 PRK06526 transposase; Provisio 97.2 0.0023 4.9E-08 49.3 7.9 32 1-32 103-139 (254)
310 PHA03138 thymidine kinase; Pro 97.2 0.0079 1.7E-07 47.8 10.9 24 175-200 294-317 (340)
311 TIGR01223 Pmev_kin_anim phosph 97.2 0.045 9.8E-07 39.5 14.4 123 1-129 4-134 (182)
312 cd00984 DnaB_C DnaB helicase C 97.2 0.0031 6.7E-08 48.0 8.6 29 1-29 18-52 (242)
313 COG0466 Lon ATP-dependent Lon 97.2 0.00037 8.1E-09 59.8 3.8 32 1-32 355-388 (782)
314 PF03308 ArgK: ArgK protein; 97.2 0.00013 2.9E-09 55.5 1.0 20 1-20 34-53 (266)
315 TIGR03709 PPK2_rel_1 polyphosp 97.2 0.008 1.7E-07 46.3 10.6 106 1-134 61-185 (264)
316 PRK14088 dnaA chromosomal repl 97.2 0.011 2.4E-07 49.2 12.3 33 1-33 135-174 (440)
317 TIGR03015 pepcterm_ATPase puta 97.2 0.00022 4.8E-09 55.1 2.1 21 1-21 48-68 (269)
318 PRK14086 dnaA chromosomal repl 97.2 0.0043 9.2E-08 53.3 9.8 33 1-33 319-358 (617)
319 PRK08903 DnaA regulatory inact 97.2 0.00023 5.1E-09 53.7 2.2 31 1-31 47-82 (227)
320 COG3911 Predicted ATPase [Gene 97.2 0.0031 6.8E-08 44.0 7.3 22 1-23 14-35 (183)
321 PRK07764 DNA polymerase III su 97.2 0.0016 3.4E-08 58.0 7.4 23 1-23 42-64 (824)
322 PRK09183 transposase/IS protei 97.2 0.0038 8.3E-08 48.2 8.8 31 1-31 107-142 (259)
323 PRK09435 membrane ATPase/prote 97.2 0.00017 3.7E-09 57.4 1.4 29 1-29 61-94 (332)
324 COG0464 SpoVK ATPases of the A 97.1 0.00092 2E-08 56.4 5.8 30 1-30 281-310 (494)
325 PRK07994 DNA polymerase III su 97.1 0.005 1.1E-07 53.3 10.1 23 1-23 43-65 (647)
326 COG1124 DppF ABC-type dipeptid 97.1 0.00021 4.7E-09 53.7 1.6 19 1-19 38-56 (252)
327 cd01129 PulE-GspE PulE/GspE Th 97.1 0.0019 4.2E-08 50.0 6.8 109 1-130 85-196 (264)
328 PRK14954 DNA polymerase III su 97.1 0.0043 9.2E-08 53.6 9.4 23 1-23 43-65 (620)
329 COG1703 ArgK Putative periplas 97.1 0.00028 6E-09 54.7 2.0 20 1-20 56-75 (323)
330 PRK14952 DNA polymerase III su 97.1 0.003 6.5E-08 54.2 8.4 23 1-23 40-62 (584)
331 PF02367 UPF0079: Uncharacteri 97.1 0.00027 5.7E-09 48.0 1.7 23 1-23 20-42 (123)
332 TIGR03708 poly_P_AMP_trns poly 97.1 0.0033 7.1E-08 52.7 8.4 106 1-134 45-169 (493)
333 cd00544 CobU Adenosylcobinamid 97.1 0.00039 8.4E-09 50.1 2.6 27 1-27 4-32 (169)
334 cd01131 PilT Pilus retraction 97.1 0.00028 6.1E-09 52.2 1.9 21 1-21 6-26 (198)
335 COG0378 HypB Ni2+-binding GTPa 97.1 0.00036 7.9E-09 50.7 2.3 31 1-31 18-52 (202)
336 TIGR02012 tigrfam_recA protein 97.1 0.0031 6.7E-08 50.1 7.7 29 1-29 60-93 (321)
337 cd01120 RecA-like_NTPases RecA 97.1 0.00033 7.2E-09 49.5 2.1 20 1-20 4-23 (165)
338 CHL00176 ftsH cell division pr 97.1 0.00034 7.3E-09 60.5 2.4 27 1-27 221-247 (638)
339 COG2884 FtsE Predicted ATPase 97.1 0.0003 6.5E-09 51.1 1.8 20 1-20 33-52 (223)
340 KOG0734 AAA+-type ATPase conta 97.1 0.0033 7.3E-08 52.6 7.9 27 1-27 342-368 (752)
341 PRK14959 DNA polymerase III su 97.1 0.013 2.7E-07 50.6 11.7 22 1-22 43-64 (624)
342 PRK10751 molybdopterin-guanine 97.0 0.00029 6.2E-09 50.8 1.6 21 1-21 11-31 (173)
343 PRK14951 DNA polymerase III su 97.0 0.0064 1.4E-07 52.5 9.9 22 1-22 43-64 (618)
344 PRK14950 DNA polymerase III su 97.0 0.007 1.5E-07 52.2 10.1 22 1-22 43-64 (585)
345 COG0714 MoxR-like ATPases [Gen 97.0 0.00044 9.4E-09 55.3 2.5 24 1-24 48-71 (329)
346 PRK07952 DNA replication prote 97.0 0.0022 4.8E-08 49.0 6.2 33 1-33 104-141 (244)
347 COG0396 sufC Cysteine desulfur 97.0 0.00032 7E-09 52.3 1.5 30 1-30 35-64 (251)
348 PRK14087 dnaA chromosomal repl 97.0 0.009 2E-07 49.9 10.1 33 1-33 146-185 (450)
349 PRK08181 transposase; Validate 97.0 0.0047 1E-07 47.9 7.8 34 1-34 111-149 (269)
350 KOG0731 AAA+-type ATPase conta 97.0 0.00041 8.8E-09 60.3 2.1 27 1-27 349-375 (774)
351 COG1136 SalX ABC-type antimicr 97.0 0.00038 8.1E-09 52.2 1.7 18 1-18 36-53 (226)
352 COG2255 RuvB Holliday junction 97.0 0.00054 1.2E-08 52.7 2.5 23 1-23 57-79 (332)
353 TIGR03689 pup_AAA proteasome A 97.0 0.00044 9.6E-09 58.1 2.2 23 1-23 221-243 (512)
354 TIGR01243 CDC48 AAA family ATP 97.0 0.00051 1.1E-08 60.7 2.7 27 1-27 492-518 (733)
355 PRK11034 clpA ATP-dependent Cl 96.9 0.00046 1E-08 60.8 2.3 30 1-30 493-524 (758)
356 PLN03025 replication factor C 96.9 0.00043 9.2E-09 55.1 1.9 20 1-20 39-58 (319)
357 KOG0780 Signal recognition par 96.9 0.0026 5.7E-08 51.1 6.1 108 1-118 106-224 (483)
358 PRK12727 flagellar biosynthesi 96.9 0.0069 1.5E-07 51.1 8.9 31 1-31 355-392 (559)
359 TIGR00176 mobB molybdopterin-g 96.9 0.00043 9.4E-09 49.2 1.7 20 1-20 4-23 (155)
360 PRK08691 DNA polymerase III su 96.9 0.0035 7.5E-08 54.5 7.3 23 1-23 43-65 (709)
361 TIGR00101 ureG urease accessor 96.9 0.00051 1.1E-08 50.9 2.1 20 1-20 6-25 (199)
362 COG3839 MalK ABC-type sugar tr 96.9 0.00035 7.5E-09 55.6 1.2 18 1-18 34-51 (338)
363 TIGR01618 phage_P_loop phage n 96.9 0.00036 7.7E-09 52.4 1.1 29 1-31 17-45 (220)
364 KOG0738 AAA+-type ATPase [Post 96.9 0.042 9.2E-07 44.5 12.6 30 1-30 250-281 (491)
365 cd01122 GP4d_helicase GP4d_hel 96.9 0.0084 1.8E-07 46.4 8.9 28 1-28 35-68 (271)
366 COG1219 ClpX ATP-dependent pro 96.9 0.00061 1.3E-08 53.3 2.4 29 1-29 102-130 (408)
367 cd00983 recA RecA is a bacter 96.9 0.0058 1.2E-07 48.6 7.9 28 1-28 60-92 (325)
368 TIGR02525 plasmid_TraJ plasmid 96.9 0.0051 1.1E-07 49.9 7.8 114 1-130 154-272 (372)
369 PRK10463 hydrogenase nickel in 96.9 0.00052 1.1E-08 53.5 1.9 28 1-28 109-140 (290)
370 COG4136 ABC-type uncharacteriz 96.9 0.0056 1.2E-07 43.0 6.8 43 74-116 146-194 (213)
371 PF06068 TIP49: TIP49 C-termin 96.9 0.0005 1.1E-08 55.0 1.8 31 1-31 55-89 (398)
372 COG1116 TauB ABC-type nitrate/ 96.9 0.00048 1E-08 52.1 1.7 20 1-20 34-53 (248)
373 PRK14965 DNA polymerase III su 96.9 0.0055 1.2E-07 52.7 8.2 23 1-23 43-65 (576)
374 KOG0733 Nuclear AAA ATPase (VC 96.9 0.00062 1.4E-08 57.5 2.4 27 1-27 550-576 (802)
375 TIGR00763 lon ATP-dependent pr 96.9 0.00062 1.3E-08 60.5 2.5 25 1-25 352-376 (775)
376 PRK07133 DNA polymerase III su 96.9 0.0096 2.1E-07 52.1 9.6 23 1-23 45-67 (725)
377 PF10662 PduV-EutP: Ethanolami 96.9 0.00051 1.1E-08 47.8 1.5 19 1-19 6-24 (143)
378 PRK13833 conjugal transfer pro 96.9 0.003 6.6E-08 50.2 6.1 110 1-131 149-263 (323)
379 COG3842 PotA ABC-type spermidi 96.9 0.00043 9.3E-09 55.4 1.3 18 1-18 36-53 (352)
380 PRK10646 ADP-binding protein; 96.9 0.00076 1.6E-08 47.6 2.4 23 1-23 33-55 (153)
381 PF13086 AAA_11: AAA domain; P 96.9 0.00046 9.9E-09 51.8 1.4 20 1-20 22-41 (236)
382 PRK14948 DNA polymerase III su 96.9 0.01 2.2E-07 51.4 9.6 23 1-23 43-65 (620)
383 cd03116 MobB Molybdenum is an 96.9 0.00056 1.2E-08 48.8 1.7 20 1-20 6-25 (159)
384 PF01078 Mg_chelatase: Magnesi 96.9 0.00054 1.2E-08 50.6 1.6 21 1-21 27-47 (206)
385 TIGR01243 CDC48 AAA family ATP 96.9 0.00058 1.3E-08 60.4 2.1 26 1-26 217-242 (733)
386 PF13191 AAA_16: AAA ATPase do 96.9 0.00053 1.1E-08 49.7 1.6 20 1-20 29-48 (185)
387 KOG0739 AAA+-type ATPase [Post 96.9 0.0037 8E-08 48.7 6.1 35 1-35 171-207 (439)
388 PRK13695 putative NTPase; Prov 96.8 0.00057 1.2E-08 49.4 1.7 20 1-20 5-24 (174)
389 COG2274 SunT ABC-type bacterio 96.8 0.0024 5.1E-08 56.0 5.7 20 1-20 504-523 (709)
390 COG1222 RPT1 ATP-dependent 26S 96.8 0.00076 1.7E-08 53.5 2.4 33 1-33 190-224 (406)
391 TIGR02788 VirB11 P-type DNA tr 96.8 0.0032 6.9E-08 49.9 5.9 21 1-21 149-169 (308)
392 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.8 0.00057 1.2E-08 51.2 1.6 20 1-20 35-54 (218)
393 COG2805 PilT Tfp pilus assembl 96.8 0.025 5.4E-07 44.3 10.4 88 1-104 130-221 (353)
394 PRK08939 primosomal protein Dn 96.8 0.015 3.2E-07 46.1 9.6 34 1-34 161-199 (306)
395 PF01712 dNK: Deoxynucleoside 96.8 0.0015 3.2E-08 45.9 3.6 83 102-200 60-144 (146)
396 PRK06731 flhF flagellar biosyn 96.8 0.013 2.7E-07 45.5 9.0 31 1-31 80-115 (270)
397 PF03205 MobB: Molybdopterin g 96.8 0.0005 1.1E-08 48.0 1.1 20 1-20 5-24 (140)
398 PRK06995 flhF flagellar biosyn 96.8 0.0048 1E-07 51.6 7.0 30 1-30 261-297 (484)
399 TIGR01166 cbiO cobalt transpor 96.8 0.00062 1.3E-08 49.9 1.6 20 1-20 23-42 (190)
400 PRK11331 5-methylcytosine-spec 96.8 0.00068 1.5E-08 55.9 2.0 21 1-21 199-219 (459)
401 PRK14721 flhF flagellar biosyn 96.8 0.013 2.8E-07 48.3 9.3 20 1-20 196-215 (420)
402 PRK04296 thymidine kinase; Pro 96.8 0.00058 1.3E-08 50.2 1.5 20 1-20 7-26 (190)
403 PRK13768 GTPase; Provisional 96.8 0.00062 1.4E-08 52.4 1.6 30 1-30 7-41 (253)
404 TIGR00960 3a0501s02 Type II (G 96.8 0.00061 1.3E-08 51.0 1.6 20 1-20 34-53 (216)
405 COG1484 DnaC DNA replication p 96.8 0.0071 1.5E-07 46.6 7.4 34 1-34 110-148 (254)
406 TIGR02639 ClpA ATP-dependent C 96.8 0.013 2.9E-07 51.9 10.0 20 1-20 208-227 (731)
407 COG1117 PstB ABC-type phosphat 96.8 0.00063 1.4E-08 50.4 1.5 17 1-17 38-54 (253)
408 PRK15455 PrkA family serine pr 96.8 0.0006 1.3E-08 57.8 1.6 20 1-20 108-127 (644)
409 PRK06647 DNA polymerase III su 96.8 0.0052 1.1E-07 52.6 7.2 23 1-23 43-65 (563)
410 cd03292 ABC_FtsE_transporter F 96.8 0.00064 1.4E-08 50.8 1.6 20 1-20 32-51 (214)
411 PF00005 ABC_tran: ABC transpo 96.8 0.00045 9.7E-09 47.7 0.7 20 1-20 16-35 (137)
412 COG1120 FepC ABC-type cobalami 96.8 0.00069 1.5E-08 51.9 1.7 30 1-30 33-66 (258)
413 cd03264 ABC_drug_resistance_li 96.8 0.00067 1.4E-08 50.6 1.6 20 1-20 30-49 (211)
414 KOG0989 Replication factor C, 96.8 0.0071 1.5E-07 47.2 7.1 23 1-23 62-84 (346)
415 cd03225 ABC_cobalt_CbiO_domain 96.8 0.00069 1.5E-08 50.5 1.7 20 1-20 32-51 (211)
416 cd02034 CooC The accessory pro 96.8 0.00069 1.5E-08 45.6 1.5 29 1-29 4-37 (116)
417 PF01443 Viral_helicase1: Vira 96.8 0.00075 1.6E-08 51.0 1.8 20 1-20 3-22 (234)
418 cd03263 ABC_subfamily_A The AB 96.8 0.0007 1.5E-08 50.8 1.7 20 1-20 33-52 (220)
419 PRK13851 type IV secretion sys 96.7 0.0024 5.3E-08 51.2 4.7 116 1-131 167-284 (344)
420 TIGR02673 FtsE cell division A 96.7 0.00071 1.5E-08 50.5 1.6 20 1-20 33-52 (214)
421 PRK07940 DNA polymerase III su 96.7 0.013 2.7E-07 48.1 8.9 23 1-23 41-63 (394)
422 cd03269 ABC_putative_ATPase Th 96.7 0.00075 1.6E-08 50.3 1.7 20 1-20 31-50 (210)
423 PRK14729 miaA tRNA delta(2)-is 96.7 0.001 2.3E-08 52.2 2.5 32 1-33 9-42 (300)
424 cd03226 ABC_cobalt_CbiO_domain 96.7 0.00071 1.5E-08 50.2 1.6 20 1-20 31-50 (205)
425 COG0552 FtsY Signal recognitio 96.7 0.0079 1.7E-07 47.5 7.3 33 1-33 144-181 (340)
426 cd03259 ABC_Carb_Solutes_like 96.7 0.00075 1.6E-08 50.4 1.7 20 1-20 31-50 (213)
427 PRK14963 DNA polymerase III su 96.7 0.00076 1.6E-08 56.9 1.9 22 1-22 41-62 (504)
428 cd03261 ABC_Org_Solvent_Resist 96.7 0.00074 1.6E-08 51.3 1.7 20 1-20 31-50 (235)
429 cd03293 ABC_NrtD_SsuB_transpor 96.7 0.00073 1.6E-08 50.7 1.6 20 1-20 35-54 (220)
430 PHA03134 thymidine kinase; Pro 96.7 0.062 1.3E-06 42.8 12.2 19 1-19 18-36 (340)
431 PF08477 Miro: Miro-like prote 96.7 0.00085 1.8E-08 45.0 1.7 20 1-20 4-23 (119)
432 cd01983 Fer4_NifH The Fer4_Nif 96.7 0.00096 2.1E-08 42.7 1.9 28 1-28 4-34 (99)
433 cd03224 ABC_TM1139_LivF_branch 96.7 0.00075 1.6E-08 50.7 1.6 20 1-20 31-50 (222)
434 TIGR03877 thermo_KaiC_1 KaiC d 96.7 0.0053 1.2E-07 46.7 6.2 30 1-30 26-60 (237)
435 TIGR02237 recomb_radB DNA repa 96.7 0.0009 2E-08 49.8 1.9 29 1-29 17-50 (209)
436 cd03229 ABC_Class3 This class 96.7 0.00081 1.7E-08 48.8 1.6 20 1-20 31-50 (178)
437 TIGR03608 L_ocin_972_ABC putat 96.7 0.00081 1.8E-08 49.9 1.7 20 1-20 29-48 (206)
438 cd01124 KaiC KaiC is a circadi 96.7 0.0009 1.9E-08 48.7 1.9 29 1-29 4-37 (187)
439 PRK10865 protein disaggregatio 96.7 0.0032 6.9E-08 56.6 5.6 20 1-20 204-223 (857)
440 TIGR02639 ClpA ATP-dependent C 96.7 0.00094 2E-08 59.0 2.3 30 1-30 489-520 (731)
441 cd03258 ABC_MetN_methionine_tr 96.7 0.00079 1.7E-08 51.0 1.6 20 1-20 36-55 (233)
442 TIGR02315 ABC_phnC phosphonate 96.7 0.00081 1.8E-08 51.3 1.7 20 1-20 33-52 (243)
443 cd03301 ABC_MalK_N The N-termi 96.7 0.00082 1.8E-08 50.2 1.6 20 1-20 31-50 (213)
444 cd03256 ABC_PhnC_transporter A 96.7 0.00081 1.7E-08 51.2 1.6 20 1-20 32-51 (241)
445 cd03219 ABC_Mj1267_LivG_branch 96.7 0.00077 1.7E-08 51.2 1.4 20 1-20 31-50 (236)
446 cd03262 ABC_HisP_GlnQ_permease 96.7 0.00086 1.9E-08 50.0 1.7 20 1-20 31-50 (213)
447 PF06309 Torsin: Torsin; Inte 96.7 0.0011 2.4E-08 45.0 2.0 20 1-20 58-77 (127)
448 cd00880 Era_like Era (E. coli 96.7 0.001 2.2E-08 46.3 2.0 19 1-19 1-19 (163)
449 PRK13894 conjugal transfer ATP 96.7 0.0059 1.3E-07 48.6 6.4 59 71-131 209-267 (319)
450 cd03222 ABC_RNaseL_inhibitor T 96.7 0.00079 1.7E-08 48.9 1.4 20 1-20 30-49 (177)
451 cd03230 ABC_DR_subfamily_A Thi 96.7 0.00086 1.9E-08 48.4 1.6 20 1-20 31-50 (173)
452 COG4618 ArpD ABC-type protease 96.7 0.001 2.3E-08 55.1 2.2 30 1-30 367-400 (580)
453 TIGR02211 LolD_lipo_ex lipopro 96.7 0.00088 1.9E-08 50.3 1.7 20 1-20 36-55 (221)
454 cd03296 ABC_CysA_sulfate_impor 96.7 0.00086 1.9E-08 51.0 1.7 20 1-20 33-52 (239)
455 PRK15177 Vi polysaccharide exp 96.7 0.00087 1.9E-08 50.2 1.6 20 1-20 18-37 (213)
456 PRK14969 DNA polymerase III su 96.7 0.0011 2.3E-08 56.4 2.3 23 1-23 43-65 (527)
457 PRK11629 lolD lipoprotein tran 96.7 0.0009 2E-08 50.7 1.7 20 1-20 40-59 (233)
458 cd01394 radB RadB. The archaea 96.7 0.001 2.2E-08 49.8 2.0 29 1-29 24-57 (218)
459 TIGR01420 pilT_fam pilus retra 96.7 0.014 3.1E-07 46.9 8.6 21 1-21 127-147 (343)
460 cd03223 ABCD_peroxisomal_ALDP 96.7 0.00093 2E-08 48.0 1.7 20 1-20 32-51 (166)
461 cd03235 ABC_Metallic_Cations A 96.7 0.00081 1.7E-08 50.2 1.4 20 1-20 30-49 (213)
462 cd03247 ABCC_cytochrome_bd The 96.7 0.00092 2E-08 48.5 1.6 20 1-20 33-52 (178)
463 PF01695 IstB_IS21: IstB-like 96.7 0.001 2.2E-08 48.4 1.8 34 1-34 52-90 (178)
464 cd03260 ABC_PstB_phosphate_tra 96.7 0.00091 2E-08 50.5 1.6 20 1-20 31-50 (227)
465 TIGR03881 KaiC_arch_4 KaiC dom 96.7 0.0067 1.4E-07 45.8 6.4 18 1-18 25-42 (229)
466 cd03283 ABC_MutS-like MutS-lik 96.6 0.00094 2E-08 49.5 1.6 18 1-18 30-47 (199)
467 cd03265 ABC_DrrA DrrA is the A 96.6 0.00093 2E-08 50.2 1.6 20 1-20 31-50 (220)
468 cd00882 Ras_like_GTPase Ras-li 96.6 0.0013 2.8E-08 45.2 2.3 21 1-21 1-21 (157)
469 PRK13541 cytochrome c biogenes 96.6 0.00098 2.1E-08 49.1 1.7 20 1-20 31-50 (195)
470 cd03232 ABC_PDR_domain2 The pl 96.6 0.00096 2.1E-08 49.1 1.6 18 1-18 38-55 (192)
471 cd03234 ABCG_White The White s 96.6 0.00099 2.1E-08 50.3 1.6 21 1-21 38-58 (226)
472 PRK10733 hflB ATP-dependent me 96.6 0.0012 2.6E-08 57.4 2.4 27 1-27 190-216 (644)
473 TIGR03410 urea_trans_UrtE urea 96.6 0.00097 2.1E-08 50.4 1.6 20 1-20 31-50 (230)
474 PRK11124 artP arginine transpo 96.6 0.001 2.2E-08 50.7 1.7 20 1-20 33-52 (242)
475 cd03238 ABC_UvrA The excision 96.6 0.001 2.2E-08 48.3 1.5 18 1-18 26-43 (176)
476 cd03215 ABC_Carb_Monos_II This 96.6 0.001 2.2E-08 48.5 1.6 20 1-20 31-50 (182)
477 PRK10247 putative ABC transpor 96.6 0.001 2.2E-08 50.2 1.6 20 1-20 38-57 (225)
478 KOG2004 Mitochondrial ATP-depe 96.6 0.0011 2.4E-08 57.1 1.9 28 1-28 443-472 (906)
479 COG4240 Predicted kinase [Gene 96.6 0.0014 3E-08 49.0 2.2 32 1-32 55-92 (300)
480 PF03976 PPK2: Polyphosphate k 96.6 0.0025 5.3E-08 48.2 3.6 103 1-134 36-160 (228)
481 PRK11784 tRNA 2-selenouridine 96.6 0.015 3.2E-07 46.8 8.2 31 1-32 146-176 (345)
482 TIGR00073 hypB hydrogenase acc 96.6 0.0011 2.4E-08 49.3 1.8 21 1-21 27-47 (207)
483 TIGR03864 PQQ_ABC_ATP ABC tran 96.6 0.0011 2.3E-08 50.5 1.6 20 1-20 32-51 (236)
484 PRK05563 DNA polymerase III su 96.6 0.0077 1.7E-07 51.7 6.9 23 1-23 43-65 (559)
485 cd03114 ArgK-like The function 96.6 0.0011 2.4E-08 46.7 1.6 28 1-28 4-36 (148)
486 cd03257 ABC_NikE_OppD_transpor 96.6 0.0011 2.3E-08 50.1 1.6 20 1-20 36-55 (228)
487 TIGR01978 sufC FeS assembly AT 96.6 0.001 2.2E-08 50.6 1.5 19 1-19 31-49 (243)
488 cd03268 ABC_BcrA_bacitracin_re 96.6 0.0011 2.4E-08 49.3 1.7 20 1-20 31-50 (208)
489 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.6 0.001 2.2E-08 46.6 1.4 20 1-20 31-50 (144)
490 cd03266 ABC_NatA_sodium_export 96.6 0.0011 2.4E-08 49.6 1.7 20 1-20 36-55 (218)
491 cd03297 ABC_ModC_molybdenum_tr 96.6 0.0011 2.4E-08 49.6 1.6 20 1-20 28-47 (214)
492 PRK14250 phosphate ABC transpo 96.6 0.0011 2.4E-08 50.6 1.6 20 1-20 34-53 (241)
493 PRK10744 pstB phosphate transp 96.6 0.0011 2.4E-08 51.2 1.6 20 1-20 44-63 (260)
494 PHA02624 large T antigen; Prov 96.6 0.0015 3.3E-08 55.6 2.5 27 1-27 436-462 (647)
495 PRK11264 putative amino-acid A 96.6 0.0011 2.4E-08 50.7 1.6 20 1-20 34-53 (250)
496 PRK14493 putative bifunctional 96.6 0.0012 2.5E-08 51.4 1.7 20 1-20 6-25 (274)
497 PF01926 MMR_HSR1: 50S ribosom 96.6 0.001 2.2E-08 44.6 1.2 18 1-18 4-21 (116)
498 PRK11248 tauB taurine transpor 96.6 0.0011 2.4E-08 51.0 1.6 20 1-20 32-51 (255)
499 KOG4235 Mitochondrial thymidin 96.6 0.019 4.2E-07 42.0 7.7 24 110-134 155-178 (244)
500 PRK05707 DNA polymerase III su 96.6 0.023 5E-07 45.4 9.1 22 1-22 27-48 (328)
No 1
>PLN02674 adenylate kinase
Probab=99.91 E-value=4.6e-23 Score=155.28 Aligned_cols=185 Identities=19% Similarity=0.202 Sum_probs=130.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|.|+|||||||+|+.|+++||+++|+++++.+... ...++.+.... ..+..+.+ +..+.+...+.+.+..
T Consensus 36 l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i------~~~s~~g~~i~--~~~~~G~l--vpd~iv~~lv~~~l~~ 105 (244)
T PLN02674 36 LIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAV------AAKTPLGIKAK--EAMDKGEL--VSDDLVVGIIDEAMKK 105 (244)
T ss_pred EECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHH------hccChhhHHHH--HHHHcCCc--cCHHHHHHHHHHHHhC
Confidence 57999999999999999999999999999976532 11233222111 11111222 3444555555555533
Q ss_pred ---CCcEEEeCCCCchHhHHHHHHHHHhhCCe-EEEEEecCCCHHHHHHHHHhcCCCCCCCccCC---CCC-CC------
Q 039424 81 ---GVSVVVDSPLSRRAHLEKLVKLAGEMRAG-LVIVECKPSDEAEWRRRLEGRGNEGGCGVVGD---DRP-SS------ 146 (203)
Q Consensus 81 ---~~~vIid~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~---~~~-~~------ 146 (203)
+.+||+||......+...|..+....+.. ..+|+|.++ ++++.+|+..|..++.||..|| +|+ ..
T Consensus 106 ~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~-~~~l~~Rl~gR~~~~~~g~~yn~~~~pp~~~~~~~~~ 184 (244)
T PLN02674 106 PSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAID-DAILEERITGRWIHPSSGRTYHTKFAPPKVPGVDDVT 184 (244)
T ss_pred cCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECC-HHHHHHHHhccccccccCCccccccCCCcccCccccc
Confidence 46799999776666666666555544533 357777765 5699999999999999998887 222 11
Q ss_pred -----CCCCCCHHHHHHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 147 -----WHKPSTWRDLERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 147 -----~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
.+.++..+.+.+|++.|.... +||......+.||++. +++++++.|...+
T Consensus 185 g~~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~--~~~eV~~~i~~~l 243 (244)
T PLN02674 185 GEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEK--PPKEVTAEVQKAL 243 (244)
T ss_pred CCccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCC--CHHHHHHHHHHHh
Confidence 256788999999999997543 3676666788999999 9999999999876
No 2
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.90 E-value=1.7e-22 Score=150.95 Aligned_cols=183 Identities=22% Similarity=0.255 Sum_probs=124.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|.|+|||||||+|+.|++++|+++|+++++.+..... .++.+.... .....+. ......+.+.+...+.+
T Consensus 4 i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~------~~~~~~~~~--~~~~~g~--~vp~~~~~~l~~~~i~~ 73 (210)
T TIGR01351 4 LLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKA------GTPLGKKAK--EYMEKGE--LVPDEIVNQLVKERLTQ 73 (210)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhcc------ccHHHHHHH--HHHhCCC--CCCHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999886653210 011111000 0000011 12334444555555543
Q ss_pred ----CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCC----CCCCC------
Q 039424 81 ----GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGD----DRPSS------ 146 (203)
Q Consensus 81 ----~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~----~~~~~------ 146 (203)
+.+||+||.+....+.+.|...... .+..+|+|.+++ +++.+|+..|..++.||..|| +|...
T Consensus 74 ~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~--~~~~vi~L~~~~-~~~~~Rl~~R~~~~~~g~~y~~~~~~p~~~~~~~~~ 150 (210)
T TIGR01351 74 NQDNENGFILDGFPRTLSQAEALDALLKE--KIDAVIELDVPD-EELVERLSGRRICPSCGRVYHLKFNPPKVPGCDDCT 150 (210)
T ss_pred CcccCCcEEEeCCCCCHHHHHHHHHHhcc--CCCEEEEEECCH-HHHHHHHHCCCccCCcCCccccccCCCccCCcCccc
Confidence 5679999966655555555444321 355789998865 589999999999999998887 22111
Q ss_pred -----CCCCCCHHHHHHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 147 -----WHKPSTWRDLERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 147 -----~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
.+.+++.+.+.+|++.|.... ++|......+.||++. +++++++.|.+.+
T Consensus 151 ~~~l~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~--~~~~v~~~i~~~l 209 (210)
T TIGR01351 151 GELLIQREDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNG--PIDEVWKRILEAL 209 (210)
T ss_pred CCccccCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCC--CHHHHHHHHHHhh
Confidence 246788999999999986543 2555545678999999 9999999999876
No 3
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.90 E-value=2.5e-22 Score=150.57 Aligned_cols=187 Identities=20% Similarity=0.244 Sum_probs=126.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|.|+|||||||+|+.|++++|+++++++++.+..... ..+.+... ..... .-.......+...+.+.+..
T Consensus 5 v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~------~~~~~~~~---~~~~~-~g~~~p~~~~~~~i~~~l~~ 74 (215)
T PRK00279 5 LLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKA------GTELGKEA---KSYMD-AGELVPDEIVIGLVKERLAQ 74 (215)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhc------cchHHHHH---HHHHH-cCCcCCHHHHHHHHHHHHhc
Confidence 5799999999999999999999999998886653211 11111100 00000 00012233344444444433
Q ss_pred ---CCcEEEeCCCCchHhHHHHHHHHHhhCCeE-EEEEecCCCHHHHHHHHHhcCCCCCCCccCC----CCCCC------
Q 039424 81 ---GVSVVVDSPLSRRAHLEKLVKLAGEMRAGL-VIVECKPSDEAEWRRRLEGRGNEGGCGVVGD----DRPSS------ 146 (203)
Q Consensus 81 ---~~~vIid~~~~~~~~~~~~~~~~~~~~~~~-~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~----~~~~~------ 146 (203)
..+||+||.+........+.+.....+.++ .+|+|.+++ +++.+|+..|..++.||..|| +|+..
T Consensus 75 ~~~~~g~VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~-~~~~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~ 153 (215)
T PRK00279 75 PDCKNGFLLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPD-EELVERLSGRRICPACGRTYHVKFNPPKVEGKCDVC 153 (215)
T ss_pred cCccCCEEEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCH-HHHHHHHhCCcccCccCCcccccCCCCCCcCcCcCC
Confidence 347999996666566666655555555443 678888765 589999999999999998887 22211
Q ss_pred -----CCCCCCHHHHHHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 147 -----WHKPSTWRDLERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 147 -----~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+.+++.+.+.+|++.|.... +++......+.||++. +++++++.|...|.+
T Consensus 154 ~~~l~~r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~--~~~~v~~~i~~~l~~ 214 (215)
T PRK00279 154 GEELIQRADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTG--SIDEVFADILKALGK 214 (215)
T ss_pred CCcccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCC--CHHHHHHHHHHHHhc
Confidence 235678899999999886433 3555545678999999 999999999998875
No 4
>PRK14531 adenylate kinase; Provisional
Probab=99.88 E-value=8.5e-22 Score=144.10 Aligned_cols=168 Identities=21% Similarity=0.221 Sum_probs=113.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhh-hhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDC-TLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 79 (203)
|+|+|||||||+|+.|++++|+++++++++.+. +.. ..+.+.... .....+.+ .....+...+...+.
T Consensus 7 i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~-------~~~~~~~~~--~~~~~G~~--v~d~l~~~~~~~~l~ 75 (183)
T PRK14531 7 FLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAA-------GSALGQEAE--AVMNRGEL--VSDALVLAIVESQLK 75 (183)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhc-------CCHHHHHHH--HHHHcCCC--CCHHHHHHHHHHHHh
Confidence 589999999999999999999999999888554 321 111110000 00011111 233333444443333
Q ss_pred --CCCcEEEeCCCCchHhHHHHHHHHHhhCCeE-EEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHH
Q 039424 80 --LGVSVVVDSPLSRRAHLEKLVKLAGEMRAGL-VIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDL 156 (203)
Q Consensus 80 --~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~-~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~ 156 (203)
.+.++|+||.+....+...+..++...+.++ .+++|.+++ +++.+|+..|++. ++..+.+
T Consensus 76 ~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~-~~l~~Rl~~R~r~----------------dD~~e~i 138 (183)
T PRK14531 76 ALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDD-AVLIERLLARGRA----------------DDNEAVI 138 (183)
T ss_pred hccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCH-HHHHHHhhcCCCC----------------CCCHHHH
Confidence 3567999998777777777776666666554 478888765 5999999999654 2577888
Q ss_pred HHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 157 ERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 157 ~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
.+|++.|.... ++|......+.||+++ ++++++.+|.+.+
T Consensus 139 ~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~--~~~~v~~~i~~~l 182 (183)
T PRK14531 139 RNRLEVYREKTAPLIDHYRQRGLLQSVEAQG--SIEAITERIEKVL 182 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECCC--CHHHHHHHHHHHh
Confidence 88998885432 3555545678999999 9999999999876
No 5
>PRK14526 adenylate kinase; Provisional
Probab=99.88 E-value=2e-21 Score=144.43 Aligned_cols=184 Identities=20% Similarity=0.231 Sum_probs=125.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|.|+|||||||+|+.|++.+++++++++++.+.... ..++.+.... ..+..+.+ .......+.+.+.+..
T Consensus 5 l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~------~~t~~g~~i~--~~~~~g~l--vpd~~~~~lv~~~l~~ 74 (211)
T PRK14526 5 FLGPPGSGKGTIAKILSNELNYYHISTGDLFRENIL------NSTPLGKEIK--QIVENGQL--VPDSITIKIVEDKINT 74 (211)
T ss_pred EECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcc------cCChhhHHHH--HHHHcCcc--CChHHHHHHHHHHHhc
Confidence 579999999999999999999999999999654221 1122111000 00111111 2233344444554432
Q ss_pred ---CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCC---CCCC-C-------
Q 039424 81 ---GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGD---DRPS-S------- 146 (203)
Q Consensus 81 ---~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~---~~~~-~------- 146 (203)
..+||+||......+.+.|.... . .+.+|++.++ ++++.+|+..|..++.||..|| +|+. .
T Consensus 75 ~~~~~g~ilDGfPR~~~Qa~~l~~~~---~-~~~vi~l~~~-~~~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~ 149 (211)
T PRK14526 75 IKNNDNFILDGFPRNINQAKALDKFL---P-NIKIINFLID-EELLIKRLSGRRICKSCNNIFNIYTLPTKEKGICDVCK 149 (211)
T ss_pred ccccCcEEEECCCCCHHHHHHHHHhc---C-CCEEEEEECC-HHHHHHHHHCCCcccccCCccccccCCCCccCcCCCCC
Confidence 46799999766655555544432 1 2346667765 5699999999999999999887 2221 1
Q ss_pred ----CCCCCCHHHHHHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 147 ----WHKPSTWRDLERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 147 ----~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
.+.+++.+.+.+|++.|.... ++|......+.||++. +++++.++|...+.+-
T Consensus 150 ~~l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~--~~~~V~~~i~~~l~~~ 210 (211)
T PRK14526 150 GDLYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASK--DIDEVKKKLIEIISKK 210 (211)
T ss_pred CeeeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCC--CHHHHHHHHHHHHccc
Confidence 356889999999999996543 3666655678999999 9999999999998753
No 6
>PRK14532 adenylate kinase; Provisional
Probab=99.87 E-value=3.7e-21 Score=141.40 Aligned_cols=175 Identities=17% Similarity=0.183 Sum_probs=113.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh--
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL-- 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l-- 78 (203)
|.|+|||||||+|+.|++++|+.++++|++.+..... +.+.+.... .....+.+ .....+.+.+...+
T Consensus 5 ~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~------~~~~~~~~~--~~~~~g~~--~~~~~~~~~~~~~~~~ 74 (188)
T PRK14532 5 LFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIAS------GSELGQRVK--GIMDRGEL--VSDEIVIALIEERLPE 74 (188)
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHc------CCHHHHHHH--HHHHCCCc--cCHHHHHHHHHHHHhC
Confidence 5799999999999999999999999998886653210 011100000 00001111 12223333333333
Q ss_pred -hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeE-EEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHH
Q 039424 79 -KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGL-VIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDL 156 (203)
Q Consensus 79 -~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~-~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~ 156 (203)
..+.++|+|+.+....+.+.+.+++...+.++ .+|+|++++ +++.+|+..|.... .+.+++.+.+
T Consensus 75 ~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~-~~~~~Rl~~R~~~~------------~r~dd~~~~~ 141 (188)
T PRK14532 75 AEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDD-EALIERIVKRFEEQ------------GRPDDNPEVF 141 (188)
T ss_pred cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHHHcCcCcC------------CCCCCCHHHH
Confidence 34667999998777777777777776666544 688888765 58999999885321 1234567777
Q ss_pred HHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 157 ERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 157 ~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+|+..|.... .+|......+.||++. ++++++++|.+.+..
T Consensus 142 ~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~--~~eev~~~I~~~l~~ 187 (188)
T PRK14532 142 VTRLDAYNAQTAPLLPYYAGQGKLTEVDGMG--SIEAVAASIDAALEG 187 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECCC--CHHHHHHHHHHHHhc
Confidence 78887763321 2444444578899988 999999999998853
No 7
>PLN02459 probable adenylate kinase
Probab=99.87 E-value=3.3e-21 Score=145.90 Aligned_cols=182 Identities=18% Similarity=0.203 Sum_probs=127.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|.|+|||||||+|+.|++.+|+.+|+++++.+.... ..++.+.... ..+..+.+ +....+...+...+..
T Consensus 34 ~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~------~~t~lg~~i~--~~~~~G~l--VPdeiv~~ll~~~l~~ 103 (261)
T PLN02459 34 FLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIK------SSGPLGAQLK--EIVNQGKL--VPDEIIFSLLSKRLEA 103 (261)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHh------ccchhHHHHH--HHHHcCCc--cCHHHHHHHHHHHHhc
Confidence 479999999999999999999999999999655221 1122221110 11112222 3445555555555532
Q ss_pred -----CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCC------------
Q 039424 81 -----GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDR------------ 143 (203)
Q Consensus 81 -----~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~------------ 143 (203)
..+||+||.+....+...|... ..+..+|+|.+++ +++.+|+..|...+.||..||-.
T Consensus 104 ~~~~~~~g~iLDGFPRt~~Qa~~Le~~----~~id~Vi~L~v~d-~~l~~Rl~gR~~~~~~g~~Yn~~~~~~~~~~~~~~ 178 (261)
T PLN02459 104 GEEEGESGFILDGFPRTVRQAEILEGV----TDIDLVVNLKLRE-EVLVEKCLGRRICSECGKNFNVADIDLKGEDGRPG 178 (261)
T ss_pred ccccCCceEEEeCCCCCHHHHHHHHhc----CCCCEEEEEECCH-HHHHHHhhccccccccCcccccccccccccccccc
Confidence 3579999976665555554433 2234578888765 69999999999999999888731
Q ss_pred ----CC----------CCCCCCCHHHHHHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 144 ----PS----------SWHKPSTWRDLERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 144 ----~~----------~~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
+. ..+.++.++.+.+|++.|.... +||......+.||+++ ++++++++|.+.|.
T Consensus 179 ~~~~p~~~~~~~~~~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~--~~~eV~~~i~~~l~ 250 (261)
T PLN02459 179 IVMPPLLPPPECASKLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPG--GIPETWPRLLQALN 250 (261)
T ss_pred ccCCCCCCCcccccccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCC--CHHHHHHHHHHHhc
Confidence 10 1356789999999999986433 4677666788999999 99999999999886
No 8
>PRK14529 adenylate kinase; Provisional
Probab=99.87 E-value=9.2e-21 Score=141.28 Aligned_cols=185 Identities=14% Similarity=0.106 Sum_probs=124.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|.|+|||||||+|+.|+++|++++++++++.+.... ..++.+.... .....+.+ +..+.+...+.+.+.+
T Consensus 5 l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~------~~t~lg~~i~--~~i~~G~l--vpdei~~~lv~~~l~~ 74 (223)
T PRK14529 5 IFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIG------GGTELGKKAK--EYIDRGDL--VPDDITIPMILETLKQ 74 (223)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhcc------CCChHHHHHH--HHHhccCc--chHHHHHHHHHHHHhc
Confidence 579999999999999999999999999988654221 1122111000 00111111 3444555555555543
Q ss_pred --CCcEEEeCCCCchHhHHHHHHHHHhhCC-eEEEEEecCCCHHHHHHHHHhcCCCCCCCccCC----CCCC--------
Q 039424 81 --GVSVVVDSPLSRRAHLEKLVKLAGEMRA-GLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGD----DRPS-------- 145 (203)
Q Consensus 81 --~~~vIid~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~----~~~~-------- 145 (203)
..++|+||......+.+.|..+....+. +..+|+|.+++ +++.+|+..|...+.||..++ +|+.
T Consensus 75 ~~~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~-~~l~~Rl~~R~~c~~~~~~~~~~~~~~p~~~~~~cd~ 153 (223)
T PRK14529 75 DGKNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPR-EVAKNRIMGRRLCKNDNNHPNNIFIDAIKPDGDVCRV 153 (223)
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHhhCCccccccCCcccccccCCCcccCCcCcC
Confidence 4679999977766666666655554443 34578888755 699999999988888775433 3221
Q ss_pred -----CCCCCCC-HHHHHHHhhhhcCCC-------CCCCC-----CCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 146 -----SWHKPST-WRDLERLLEGYCGCT-------EYDVG-----DVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 146 -----~~~~~~~-~e~~~~~~~~~~~~~-------~~~~~-----~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
..+.+++ +|.+.+|++.|.... +||.. ....+.||+++ ++++++++|...+
T Consensus 154 ~~~~l~~R~DD~~ee~i~~Rl~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~id~~~--~~~~V~~~i~~~l 222 (223)
T PRK14529 154 CGGELSTRADDQDEEAINKRHDIYYDTETGTLAAAYFFKDLAAKGSTKYIELDGEG--SIDEIKETLLKQL 222 (223)
T ss_pred cCCccccCCCCCcHHHHHHHHHHHHHcccccchHHHHHhhcccccCCeEEEEECCC--CHHHHHHHHHHHh
Confidence 1255675 689999999997641 26653 44688999999 9999999998876
No 9
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.87 E-value=1.1e-20 Score=138.29 Aligned_cols=173 Identities=14% Similarity=0.178 Sum_probs=109.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|++++|+.+++++++.+..... ..+.+.... .....+.. ...+.+.+.+...+..
T Consensus 4 i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~------~~~~~~~~~--~~~~~g~~--~~~~~~~~ll~~~~~~ 73 (183)
T TIGR01359 4 VLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKS------GSENGELIE--SMIKNGKI--VPSEVTVKLLKNAIQA 73 (183)
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhc------CChHHHHHH--HHHHCCCc--CCHHHHHHHHHHHHhc
Confidence 5799999999999999999999999998775542210 011100000 00000011 2223333344444332
Q ss_pred --CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHH
Q 039424 81 --GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLER 158 (203)
Q Consensus 81 --~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 158 (203)
+.+||+||.+........|.++......+..+|+|.+++ +++.+|+..|.... .+.+++.+.+.+
T Consensus 74 ~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~-~~~~~Rl~~R~~~~------------~r~dd~~e~~~~ 140 (183)
T TIGR01359 74 DGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPE-EVMIKRLLKRGQSS------------GRVDDNIESIKK 140 (183)
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHHhcCCccC------------CCCCCCHHHHHH
Confidence 567999997776666677666553323344578888866 58999999986531 122356788888
Q ss_pred HhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 159 LLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 159 ~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
+++.|.... +++......++||+++ +++++.++|.+.+
T Consensus 141 r~~~y~~~~~~i~~~~~~~~~~~~Id~~~--~~~~v~~~i~~~l 182 (183)
T TIGR01359 141 RFRTYNEQTLPVIEHYENKGKVKEINAEG--SVEEVFEDVEKIF 182 (183)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEECCC--CHHHHHHHHHHHh
Confidence 887775432 2333334568999999 9999999998876
No 10
>PRK14530 adenylate kinase; Provisional
Probab=99.87 E-value=1.3e-20 Score=141.34 Aligned_cols=185 Identities=18% Similarity=0.170 Sum_probs=121.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhh--hhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLS--LQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 78 (203)
|+|+|||||||+|+.|++.+|+++|+++++.+.... +... ....+. .......+.+ .........+...+
T Consensus 8 i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~---~~~~~~---~~~~~~~g~~--~~d~~~~~~l~~~l 79 (215)
T PRK14530 8 LLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDM---DTEYDT---PGEYMDAGEL--VPDAVVNEIVEEAL 79 (215)
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccc---cchHHH---HHHHHHcCCC--CCHHHHHHHHHHHH
Confidence 579999999999999999999999999999765321 0000 000000 0000001111 22234444555555
Q ss_pred hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCC----CCCCC--------
Q 039424 79 KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGD----DRPSS-------- 146 (203)
Q Consensus 79 ~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~----~~~~~-------- 146 (203)
....+||+||......+.+.+..+ ..+..+|+|++++ +++.+|+..|..++.||..|+ +|...
T Consensus 80 ~~~~~~IldG~pr~~~q~~~l~~~----~~~d~vI~Ld~~~-~~l~~Rl~~R~~~~~~g~~~~~~~~~p~~~~~~~~~~~ 154 (215)
T PRK14530 80 SDADGFVLDGYPRNLEQAEYLESI----TDLDVVLYLDVSE-EELVDRLTGRRVCPDCGANYHVEFNQPEEEGVCDECGG 154 (215)
T ss_pred hcCCCEEEcCCCCCHHHHHHHHHh----cCCCEEEEEeCCH-HHHHHHHhCCCcCcccCCccccCCCCCcccccCcccCC
Confidence 556789999965555555554432 2234578888765 589999999988888887666 22211
Q ss_pred ---CCCCCCHHHHHHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 147 ---WHKPSTWRDLERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 147 ---~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+.++..+.+++|+..|.... .+|......+.||++. +++++++.|...|..
T Consensus 155 rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~--~~~~v~~~i~~~l~~ 213 (215)
T PRK14530 155 ELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQ--TPDEVWADIQDAIDD 213 (215)
T ss_pred cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCC--CHHHHHHHHHHHHhc
Confidence 244678899999999886422 2454444678999999 999999999999875
No 11
>PRK14527 adenylate kinase; Provisional
Probab=99.86 E-value=1.6e-20 Score=138.33 Aligned_cols=173 Identities=22% Similarity=0.231 Sum_probs=117.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|.|+|||||||+|+.|++++|+.++++|++.+..... ..+.+... ...... ........+...+.+.+..
T Consensus 11 i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~------~~~~~~~~---~~~~~~-g~~~p~~~~~~l~~~~l~~ 80 (191)
T PRK14527 11 FLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVAR------GTELGQRA---KPIMEA-GDLVPDELILALIRDELAG 80 (191)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhc------CcHHHHHH---HHHHHc-CCCCcHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999886543211 01110000 000000 0012234455555555544
Q ss_pred --CCcEEEeCCCCchHhHHHHHHHHHhhCCeEE-EEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH
Q 039424 81 --GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLV-IVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE 157 (203)
Q Consensus 81 --~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~-~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~ 157 (203)
+.+||+||.+....+.+.+..++...+.++. +++|.+++ +++.+|+.+|.... .+.+++.+.+.
T Consensus 81 ~~~~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~-~~~~~Rl~~R~~~~------------~r~dd~~~~~~ 147 (191)
T PRK14527 81 MEPVRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPD-EELIRRIVERARQE------------GRSDDNEETVR 147 (191)
T ss_pred CCCCcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCH-HHHHHHHHcCcccC------------CCCCCCHHHHH
Confidence 4569999966656667777777766676654 67888766 58999999996432 23456788999
Q ss_pred HHhhhhcCCCC----CCCCCCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 158 RLLEGYCGCTE----YDVGDVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 158 ~~~~~~~~~~~----~~~~~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
+|++.|..... +|......+.||+++ ++++++++|...+
T Consensus 148 ~R~~~y~~~~~~v~~~y~~~~~~~~id~~~--~~~~v~~~i~~~l 190 (191)
T PRK14527 148 RRQQVYREQTQPLVDYYEARGHLKRVDGLG--TPDEVYARILKAL 190 (191)
T ss_pred HHHHHHHHHhHHHHHHHHhcCCEEEEECCC--CHHHHHHHHHHhh
Confidence 99998865433 555545678999999 9999999998876
No 12
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.85 E-value=1.2e-20 Score=141.83 Aligned_cols=181 Identities=14% Similarity=0.152 Sum_probs=118.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhh-
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLK- 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~- 79 (203)
|.|+|||||||+|+.|+++||+++|++|++.+.... ..++.+.... .....+.+ ...+.+.+.+...+.
T Consensus 11 l~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~------~~t~lg~~i~--~~~~~G~l--vpd~iv~~lv~~~l~~ 80 (229)
T PTZ00088 11 LFGAPGVGKGTFAEILSKKENLKHINMGNILREEIK------AKTTIGKEIQ--KVVTSGNL--VPDNLVIAIVKDEIAK 80 (229)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhh------cCChHHHHHH--HHHHcCCc--CCHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999765221 0111111000 00011111 222333333333332
Q ss_pred ----CCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCC----------CC-
Q 039424 80 ----LGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDD----------RP- 144 (203)
Q Consensus 80 ----~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~----------~~- 144 (203)
...+||+||......+...+.+. ..+..+|++.++. +++.+|+..|..++.||..||- |+
T Consensus 81 ~~~~~~~g~iLDGfPRt~~Qa~~l~~~----~~~~~vi~l~~~~-~~~~~Rl~~Rr~~~~~g~~y~~~~~~~~~~~~pp~ 155 (229)
T PTZ00088 81 VTDDCFKGFILDGFPRNLKQCKELGKI----TNIDLFVNIYLPR-NILIKKLLGRRICNTCNRNFNIAHIRSDPYDMPPI 155 (229)
T ss_pred hccccCceEEEecCCCCHHHHHHHHhc----CCCCEEEEEeCCH-HHHHHHHHcCcCCCccCCcceecccccccccCCCC
Confidence 25679999965554554544332 3455678888765 5899999999999999988863 11
Q ss_pred --------------CCCCCCCCHHHHHHHhhhhcCCC----CCCCCCCC-eEEE---ecCCCCChHHHHHHHHHHH
Q 039424 145 --------------SSWHKPSTWRDLERLLEGYCGCT----EYDVGDVP-KLTV---DTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 145 --------------~~~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~-~~~i---d~~~~~~~~e~~~~i~~~i 198 (203)
-..+.+++++.+.+|++.|.... ++|..... .+.| |+++ +++++.+.|.+.+
T Consensus 156 ~~~~~c~~~~~~~~l~~R~DD~~e~i~~Rl~~Y~~~t~pl~~~y~~~~~~~~~~~~~~~~~--~~~~v~~~i~~~~ 229 (229)
T PTZ00088 156 LPPADCEGCKGNPKLQKRSDDTEEIVAHRLNTYESTNSPIIQFFKNENCNLVDFEITRGLR--DFDDFYRIVLQRL 229 (229)
T ss_pred CCCCcccccCCcccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHcCCeEEEEecCCCCC--CHHHHHHHHHhhC
Confidence 01466889999999999997543 35655544 6566 6777 9999999988753
No 13
>PRK06762 hypothetical protein; Provisional
Probab=99.84 E-value=1.1e-19 Score=130.95 Aligned_cols=155 Identities=22% Similarity=0.203 Sum_probs=111.5
Q ss_pred CCCCCCCChHHHHHHHHHhC--CCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASAL--KIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~--~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 78 (203)
|+|+|||||||+|+.|++.+ ++.+++.|.+++.+..... .+ .....+.+...+...+
T Consensus 7 i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~-----~~----------------~~~~~~~~~~~~~~~~ 65 (166)
T PRK06762 7 IRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKD-----GP----------------GNLSIDLIEQLVRYGL 65 (166)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccC-----CC----------------CCcCHHHHHHHHHHHH
Confidence 58999999999999999998 5778999998765431100 00 0011233344444556
Q ss_pred hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHH
Q 039424 79 KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLER 158 (203)
Q Consensus 79 ~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 158 (203)
..|..||+|+.+....+++.+..++...+.++.+|++.++++ ++.+|+..|.... ....+.+..
T Consensus 66 ~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e-~~~~R~~~R~~~~---------------~~~~~~l~~ 129 (166)
T PRK06762 66 GHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFE-ETLRRHSTRPKSH---------------EFGEDDMRR 129 (166)
T ss_pred hCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHH-HHHHHHhcccccc---------------cCCHHHHHH
Confidence 778889999987766677777778877788999999998664 8999999986521 135678888
Q ss_pred HhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 159 LLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
.+..++.+. . ...++++++ .++++++++|.+.+.
T Consensus 130 ~~~~~~~~~----~--~~~~~~~~~-~~~~~v~~~i~~~~~ 163 (166)
T PRK06762 130 WWNPHDTLG----V--IGETIFTDN-LSLKDIFDAILTDIG 163 (166)
T ss_pred HHhhcCCcC----C--CCeEEecCC-CCHHHHHHHHHHHhc
Confidence 877665431 1 235777777 699999999999875
No 14
>PRK13808 adenylate kinase; Provisional
Probab=99.84 E-value=6.8e-20 Score=143.32 Aligned_cols=181 Identities=22% Similarity=0.221 Sum_probs=116.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|.|+|||||||+|+.|++.||+++|++|++.+.... ...+.+.... ..+..+.+ +..+.+..++.+.+.+
T Consensus 5 v~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~------~~s~~g~~~~--~~~~~G~l--VPdeiv~~li~e~l~~ 74 (333)
T PRK13808 5 LLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVA------AGTPVGLKAK--DIMASGGL--VPDEVVVGIISDRIEQ 74 (333)
T ss_pred EECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhh------cCChhhHHHH--HHHHcCCC--CCHHHHHHHHHHHHhc
Confidence 579999999999999999999999999998654221 1122111000 00011111 2333444444444432
Q ss_pred ---CCcEEEeCCCCchHhHHHHHHHHHhhC-CeEEEEEecCCCHHHHHHHHHhcCCCCC-CCccCCCCCCCCCCCCCHHH
Q 039424 81 ---GVSVVVDSPLSRRAHLEKLVKLAGEMR-AGLVIVECKPSDEAEWRRRLEGRGNEGG-CGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 81 ---~~~vIid~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~~~~~e~~~~R~~~R~~~~~-~~~~~~~~~~~~~~~~~~e~ 155 (203)
..+||+||.+...++.+.|..+....+ .|..+|+|++++ +++.+|+..|..... +|.. .+.+++.+.
T Consensus 75 ~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~-evll~Rl~~R~~~~~~rg~~-------~R~DD~~E~ 146 (333)
T PRK13808 75 PDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNE-GALLARVETRVAEMRARGEE-------VRADDTPEV 146 (333)
T ss_pred ccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCH-HHHHHHHHcCcccccccCCc-------cCCCCCHHH
Confidence 357999996666566666555554444 345678888765 599999998843210 1110 134568899
Q ss_pred HHHHhhhhcCC----CCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 156 LERLLEGYCGC----TEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 156 ~~~~~~~~~~~----~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+|+..|... ..+|......+.||.+. ++++|+.+|...|..+
T Consensus 147 i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~--siEEV~eeI~~~L~~~ 194 (333)
T PRK13808 147 LAKRLASYRAQTEPLVHYYSEKRKLLTVDGMM--TIDEVTREIGRVLAAV 194 (333)
T ss_pred HHHHHHHHHHHhHHHHHHhhccCcEEEEECCC--CHHHHHHHHHHHHHHH
Confidence 99999888654 23565555678999999 9999999999998653
No 15
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.83 E-value=4.9e-19 Score=135.59 Aligned_cols=160 Identities=24% Similarity=0.333 Sum_probs=115.0
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|+|||||||+|+.|++.+ + +.+++.|.+++.+.... . .............+.
T Consensus 4 l~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~-----------------~----~~e~~~~~~~~~~i~ 62 (249)
T TIGR03574 4 LTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWK-----------------E----KYEEFIRDSTLYLIK 62 (249)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhh-----------------H----HhHHHHHHHHHHHHH
Confidence 58999999999999999887 2 45677777765431100 0 001112233344566
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHH
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (203)
..+..+..||+|+.+....++..+..+++..+.++.+|+|.++. +.+.+|...|+.. ...+.
T Consensus 63 ~~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~-e~~~~Rn~~R~~~-----------------~~~~~ 124 (249)
T TIGR03574 63 TALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPL-DTLLRRNIERGEK-----------------IPNEV 124 (249)
T ss_pred HHHhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCH-HHHHHHHHhCCCC-----------------CCHHH
Confidence 77778888999998777777888888888888999999999866 5899999888542 23456
Q ss_pred HHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 156 LERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
+.+....|+.....+.|..+.++||++...+.+++++.|...+.
T Consensus 125 i~~l~~r~e~p~~~~~wd~~~~~vd~~~~~~~~ei~~~i~~~~~ 168 (249)
T TIGR03574 125 IKDMYEKFDEPGTKYSWDLPDLTIDTTKKIDYNEILEEILEISE 168 (249)
T ss_pred HHHHHHhhCCCCCCCCccCceEEecCCCCCCHHHHHHHHHHHhh
Confidence 66676777665555666668899999863577999999998764
No 16
>PRK14528 adenylate kinase; Provisional
Probab=99.83 E-value=1.4e-19 Score=132.59 Aligned_cols=172 Identities=19% Similarity=0.200 Sum_probs=112.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhh-
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLK- 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~- 79 (203)
|.|+|||||||+|+.|++++|+++++++++.+..... ..+.+.... .....+.+ .....+...+...+.
T Consensus 6 i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~------~~~~g~~~~--~~~~~g~l--vp~~~~~~~~~~~l~~ 75 (186)
T PRK14528 6 FMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKN------QTAMGIEAK--RYMDAGDL--VPDSVVIGIIKDRIRE 75 (186)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhc------CCHHHHHHH--HHHhCCCc--cCHHHHHHHHHHHHhC
Confidence 5799999999999999999999999999996552211 111110000 00001111 122222233333332
Q ss_pred --CCCcEEEeCCCCchHhHHHHHHHHHhhC-CeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHH
Q 039424 80 --LGVSVVVDSPLSRRAHLEKLVKLAGEMR-AGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDL 156 (203)
Q Consensus 80 --~~~~vIid~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~ 156 (203)
...++|+||........+.+.++....+ .+..+|+|++++ +++.+|+..|.... ++.+++.+.+
T Consensus 76 ~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~-~~~~~Rl~~R~~~~------------gr~dd~~e~i 142 (186)
T PRK14528 76 ADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPD-GELLKRLLGRAEIE------------GRADDNEATI 142 (186)
T ss_pred cCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHHhcCcccc------------CCCCCCHHHH
Confidence 2356999996655555565555544333 345678888866 58999999986432 2346789999
Q ss_pred HHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHH
Q 039424 157 ERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEF 197 (203)
Q Consensus 157 ~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~ 197 (203)
.+|++.|.... ++|......+.||+++ +++++++.|...
T Consensus 143 ~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~--~~~~v~~~~~~~ 185 (186)
T PRK14528 143 KNRLDNYNKKTLPLLDFYAAQKKLSQVNGVG--SLEEVTSLIQKE 185 (186)
T ss_pred HHHHHHHHHHhHHHHHHHHhCCCEEEEECCC--CHHHHHHHHHHh
Confidence 99999986543 3666555789999999 999999998865
No 17
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.83 E-value=1.2e-19 Score=133.23 Aligned_cols=174 Identities=15% Similarity=0.182 Sum_probs=108.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHh-hhh--hhhhHHHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAAS-SLL--NDLSYDVIWKIASTQ 77 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~ 77 (203)
|.|+|||||||+|+.|++++|+.+++++++.+...... .+.+... ..... ..+ .......+...+...
T Consensus 8 i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~ 78 (188)
T TIGR01360 8 IVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASG------SERGKQL---QAIMESGDLVPLDTVLDLLKDAMVAA 78 (188)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcC------CHHHHHH---HHHHHCCCCCCHHHHHHHHHHHHHcc
Confidence 57999999999999999999999999998865422100 1100000 00000 000 112233344444444
Q ss_pred hhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH
Q 039424 78 LKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE 157 (203)
Q Consensus 78 l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~ 157 (203)
+..+.+||+|+.+........ +......+..+|+|.+++ +++.+|+..|.... ...+++.+.+.
T Consensus 79 ~~~~~~~i~dg~~~~~~q~~~---~~~~~~~~~~vi~l~~~~-~~~~~Rl~~R~~~~------------~r~d~~~~~~~ 142 (188)
T TIGR01360 79 LGTSKGFLIDGYPREVKQGEE---FERRIGPPTLVLYFDCSE-DTMVKRLLKRAETS------------GRVDDNEKTIK 142 (188)
T ss_pred cCcCCeEEEeCCCCCHHHHHH---HHHcCCCCCEEEEEECCH-HHHHHHHHcccccC------------CCCCCCHHHHH
Confidence 566888999996544333333 223334566789999865 58999999886432 12345677888
Q ss_pred HHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 158 RLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 158 ~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
++++.|.... .++......+.||++. +++++.+.|...+..+
T Consensus 143 ~r~~~~~~~~~~~~~~y~~~~~~~~id~~~--~~~~v~~~i~~~l~~~ 188 (188)
T TIGR01360 143 KRLETYYKATEPVIAYYETKGKLRKINAEG--TVDDVFLQVCTAIDKL 188 (188)
T ss_pred HHHHHHHHhhHHHHHHHHhCCCEEEEECCC--CHHHHHHHHHHHHhcC
Confidence 8887653211 2333223567899998 9999999999988653
No 18
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=6.5e-19 Score=120.17 Aligned_cols=158 Identities=20% Similarity=0.205 Sum_probs=115.2
Q ss_pred CCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhh--hhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhh
Q 039424 2 KGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQT--LQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLK 79 (203)
Q Consensus 2 ~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 79 (203)
.|.+||||||++..||+++|+.||+.|++- +..+. |..+.|+.. .-.++|+. .+...+....+
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlH----p~aNi~KM~~GiPL~D------dDR~pWL~-----~l~~~~~~~~~ 65 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLH----PPANIEKMSAGIPLND------DDRWPWLE-----ALGDAAASLAQ 65 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccC----CHHHHHHHhCCCCCCc------chhhHHHH-----HHHHHHHHhhc
Confidence 499999999999999999999999999983 22222 667778755 33467773 34445555566
Q ss_pred CCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHH
Q 039424 80 LGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERL 159 (203)
Q Consensus 80 ~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 159 (203)
.+.++|+-++...+.+|+.++..+ ..+.+|||..+. +++.+|+.+|.+|- ...+-+.-.
T Consensus 66 ~~~~~vi~CSALKr~YRD~LR~~~----~~~~Fv~L~g~~-~~i~~Rm~~R~gHF----------------M~~~ll~SQ 124 (161)
T COG3265 66 KNKHVVIACSALKRSYRDLLREAN----PGLRFVYLDGDF-DLILERMKARKGHF----------------MPASLLDSQ 124 (161)
T ss_pred CCCceEEecHHHHHHHHHHHhccC----CCeEEEEecCCH-HHHHHHHHhcccCC----------------CCHHHHHHH
Confidence 677788999888888888866543 347889998654 69999999998873 233444444
Q ss_pred hhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 160 LEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
.+..++... .+..+.||.+. +++++++++++++...
T Consensus 125 fa~LE~P~~----de~vi~idi~~--~~e~vv~~~~~~l~~~ 160 (161)
T COG3265 125 FATLEEPGA----DEDVLTIDIDQ--PPEEVVAQALAWLKEG 160 (161)
T ss_pred HHHhcCCCC----CCCEEEeeCCC--CHHHHHHHHHHHHhcc
Confidence 444332211 22679999999 9999999999998754
No 19
>PRK02496 adk adenylate kinase; Provisional
Probab=99.83 E-value=2e-19 Score=131.69 Aligned_cols=170 Identities=22% Similarity=0.259 Sum_probs=110.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhh-
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLK- 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~- 79 (203)
|.|+|||||||+|+.|++.+|+++++.|++.+..... .++.+.... .....+. ......+...+...+.
T Consensus 6 i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~------~~~~g~~~~--~~~~~g~--~~~~~~~~~~l~~~l~~ 75 (184)
T PRK02496 6 FLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKE------QTPLGIKAQ--GYMDKGE--LVPDQLVLDLVQERLQQ 75 (184)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhc------cChhHHHHH--HHHHCCC--ccCHHHHHHHHHHHHhC
Confidence 5799999999999999999999999999886653311 111110000 0000111 1222334444444443
Q ss_pred --CCCcEEEeCCCCchHhHHHHHHHHHhhC-CeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHH
Q 039424 80 --LGVSVVVDSPLSRRAHLEKLVKLAGEMR-AGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDL 156 (203)
Q Consensus 80 --~~~~vIid~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~ 156 (203)
...+||+||......+...+.......+ .+..+|+|.+++ +++.+|+..|++.. +..+.+
T Consensus 76 ~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~-~~~~~Rl~~R~~~d----------------d~~~~~ 138 (184)
T PRK02496 76 PDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPD-DVVVERLLARGRKD----------------DTEEVI 138 (184)
T ss_pred cCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCH-HHHHHHHhcCCCCC----------------CCHHHH
Confidence 2356999996555455555555554443 345678888765 68999999996542 467888
Q ss_pred HHHhhhhcCC----CCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 157 ERLLEGYCGC----TEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 157 ~~~~~~~~~~----~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
.++++.|... .+++......+.||++. +++++.++|...+.
T Consensus 139 ~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~--~~~~V~~~i~~~l~ 183 (184)
T PRK02496 139 RRRLEVYREQTAPLIDYYRDRQKLLTIDGNQ--SVEAVTTELKAALA 183 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECCC--CHHHHHHHHHHHhC
Confidence 8898888652 22454444678999999 99999999998763
No 20
>PLN02200 adenylate kinase family protein
Probab=99.83 E-value=2.7e-19 Score=135.19 Aligned_cols=171 Identities=13% Similarity=0.203 Sum_probs=109.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhh-
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLK- 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~- 79 (203)
|+|+|||||||+|+.|++++|+++|+++++.+.-.. ...+.+.... .....+.+ ...+.....+...+.
T Consensus 48 I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~------~~s~~~~~i~--~~~~~G~~--vp~e~~~~~l~~~l~~ 117 (234)
T PLN02200 48 VLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIA------SNSEHGAMIL--NTIKEGKI--VPSEVTVKLIQKEMES 117 (234)
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHh------ccChhHHHHH--HHHHcCCC--CcHHHHHHHHHHHHhc
Confidence 579999999999999999999999999888654221 0011110000 00000010 122323333333333
Q ss_pred -CCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHH
Q 039424 80 -LGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLER 158 (203)
Q Consensus 80 -~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 158 (203)
.+.++|+||.+....++..+.++.. -.|..+++|.+++ +++.+|+..|.... .+++.+.+.+
T Consensus 118 ~~~~~~ILDG~Prt~~q~~~l~~~~~--~~pd~vi~Ld~~~-e~~~~Rl~~R~~~r--------------~dd~~e~~~~ 180 (234)
T PLN02200 118 SDNNKFLIDGFPRTEENRIAFERIIG--AEPNVVLFFDCPE-EEMVKRVLNRNQGR--------------VDDNIDTIKK 180 (234)
T ss_pred CCCCeEEecCCcccHHHHHHHHHHhc--cCCCEEEEEECCH-HHHHHHHHcCcCCC--------------CCCCHHHHHH
Confidence 2456999997666555555554432 1355678888866 58999999885421 2357788888
Q ss_pred HhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 159 LLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 159 ~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
|++.|.... +++......+.||++. +++++++.|.+.+..
T Consensus 181 Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~--~~eeV~~~v~~~l~~ 224 (234)
T PLN02200 181 RLKVFNALNLPVIDYYSKKGKLYTINAVG--TVDEIFEQVRPIFAA 224 (234)
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEECCC--CHHHHHHHHHHHHHH
Confidence 988876542 2444434578999999 999999999998864
No 21
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.82 E-value=1.4e-18 Score=122.84 Aligned_cols=174 Identities=14% Similarity=0.191 Sum_probs=119.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
+.|+|||||-|+|..++++|++.|+|++++.+.-.... +++.+.... ..+..+.+ +......+.+.+.+.+
T Consensus 13 VlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~-----gse~g~~I~--~~i~~G~i--VP~ei~~~LL~~am~~ 83 (195)
T KOG3079|consen 13 VLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASA-----GSERGALIK--EIIKNGDL--VPVEITLSLLEEAMRS 83 (195)
T ss_pred EEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccc-----cChHHHHHH--HHHHcCCc--CcHHHHHHHHHHHHHh
Confidence 46999999999999999999999999999966532110 111111000 11111222 3334444555554433
Q ss_pred --C-CcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH
Q 039424 81 --G-VSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE 157 (203)
Q Consensus 81 --~-~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~ 157 (203)
. ..++|||.+....+...|....+ +.+-.+++++|+. +++.+|+..|+... .+.+++.+.+.
T Consensus 84 ~~~~~~fLIDGyPR~~~q~~~fe~~i~--~~~~fvl~fdc~e-e~~l~Rll~R~q~~------------~R~DDn~esik 148 (195)
T KOG3079|consen 84 SGDSNGFLIDGYPRNVDQLVEFERKIQ--GDPDFVLFFDCPE-ETMLKRLLHRGQSN------------SRSDDNEESIK 148 (195)
T ss_pred cCCCCeEEecCCCCChHHHHHHHHHhc--CCCCEEEEEeCCH-HHHHHHHHhhcccC------------CCCCCchHHHH
Confidence 1 23999997777677676654442 2345688999865 59999999998763 24578899999
Q ss_pred HHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 158 RLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 158 ~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.|++.|.... +|+........||.+. +++++..++...+..
T Consensus 149 kR~et~~~~t~Pvi~~~e~kg~l~~i~a~~--~~d~Vf~~v~~~id~ 193 (195)
T KOG3079|consen 149 KRLETYNKSTLPVIEYYEKKGKLLKINAER--SVDDVFEEVVTAIDA 193 (195)
T ss_pred HHHHHHHHcchHHHHHHHccCcEEEecCCC--CHHHHHHHHHHHhhc
Confidence 9999885543 3666666788999999 999999999988764
No 22
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.82 E-value=5.5e-19 Score=125.16 Aligned_cols=159 Identities=19% Similarity=0.229 Sum_probs=103.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHH-HHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWK-IASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~ 79 (203)
++|+|||||||+++.||+.|+++|+|+|.++++..+..- ..++ ...++..++.+.. .+...+.
T Consensus 7 LiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI---------------~eIF-~~~GE~~FR~~E~~vl~~l~~ 70 (172)
T COG0703 7 LIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSI---------------AEIF-EEEGEEGFRRLETEVLKELLE 70 (172)
T ss_pred EEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCH---------------HHHH-HHHhHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999999887553110 1222 2222344444443 4444455
Q ss_pred CCCcEEEeC--CCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCH-HHH
Q 039424 80 LGVSVVVDS--PLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTW-RDL 156 (203)
Q Consensus 80 ~~~~vIid~--~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~-e~~ 156 (203)
.+..||..| .+..++.+.. .+..+ .+|||.++. +++++|+......| .+..... +.+
T Consensus 71 ~~~~ViaTGGG~v~~~enr~~----l~~~g---~vv~L~~~~-e~l~~Rl~~~~~RP------------ll~~~~~~~~l 130 (172)
T COG0703 71 EDNAVIATGGGAVLSEENRNL----LKKRG---IVVYLDAPF-ETLYERLQRDRKRP------------LLQTEDPREEL 130 (172)
T ss_pred cCCeEEECCCccccCHHHHHH----HHhCC---eEEEEeCCH-HHHHHHhccccCCC------------cccCCChHHHH
Confidence 555677777 3555566555 33334 789999766 59999999444443 1222333 556
Q ss_pred HHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 157 ERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
.+.++.+.+. |... +++++++.. ..++++++|+..+...
T Consensus 131 ~~L~~~R~~~--Y~e~--a~~~~~~~~--~~~~v~~~i~~~l~~~ 169 (172)
T COG0703 131 EELLEERQPL--YREV--ADFIIDTDD--RSEEVVEEILEALEGS 169 (172)
T ss_pred HHHHHHHHHH--HHHh--CcEEecCCC--CcHHHHHHHHHHHHHh
Confidence 6665554322 2222 668999999 5599999999988643
No 23
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.81 E-value=3.6e-19 Score=131.38 Aligned_cols=177 Identities=20% Similarity=0.196 Sum_probs=115.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|++.+|+.++++|++.+...... .+.+.... .....+. ......+...+...+..
T Consensus 4 i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~------~~~~~~~~--~~~~~g~--~~~~~~~~~l~~~~l~~ 73 (194)
T cd01428 4 LLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASG------TELGKKAK--EYIDSGK--LVPDEIVIKLLKERLKK 73 (194)
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcC------ChHHHHHH--HHHHcCC--ccCHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999865532110 11100000 0000001 12223444555555543
Q ss_pred ---CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCC-------CCCCC
Q 039424 81 ---GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPS-------SWHKP 150 (203)
Q Consensus 81 ---~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~-------~~~~~ 150 (203)
+.+||+||.+......+.+.......+.+..+|+|.+++ +++.+|+.+|...+.||..||-+.. ..+.+
T Consensus 74 ~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~-~~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~l~~r~d 152 (194)
T cd01428 74 PDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPD-EVLIERILGRRICPVSGRVYHLGKDDVTGEPLSQRSD 152 (194)
T ss_pred ccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHHHcCCcCCCcCCcCCcCCCcccCCccccCCC
Confidence 567999996665566666655543334667789998865 5899999999999888888873111 12345
Q ss_pred CCHHHHHHHhhhhcCC----CCCCCCCCCeEEEecCCCCChHHH
Q 039424 151 STWRDLERLLEGYCGC----TEYDVGDVPKLTVDTTASVGFQEL 190 (203)
Q Consensus 151 ~~~e~~~~~~~~~~~~----~~~~~~~~~~~~id~~~~~~~~e~ 190 (203)
+..+.+.+|++.|... .+++......+.||++. +++++
T Consensus 153 d~~~~i~~R~~~y~~~~~~i~~~~~~~~~~~~id~~~--~~~~v 194 (194)
T cd01428 153 DNEETIKKRLEVYKEQTAPLIDYYKKKGKLVEIDGSG--DIDEV 194 (194)
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHhCCCEEEEECCC--CcCcC
Confidence 6778999999888543 23555445678899998 77653
No 24
>PLN02842 nucleotide kinase
Probab=99.80 E-value=6.3e-19 Score=144.20 Aligned_cols=182 Identities=16% Similarity=0.130 Sum_probs=118.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|+++|++.+++++++.+...+ ..++.+.... .....+.+ .....+...+.+.+.+
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~------~~T~iG~~Ir--e~l~~G~l--vPdeiv~~ll~drl~~ 71 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVS------AGTDIGKRAK--EFMNSGRL--VPDEIVIAMVTGRLSR 71 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhc------cCCHHHHHHH--HHHhCCCC--CcHHHHHHHHHHHHhC
Confidence 689999999999999999999999999988654221 1112111000 00001111 2233344444444422
Q ss_pred ----CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCC---CCC-C-------
Q 039424 81 ----GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGD---DRP-S------- 145 (203)
Q Consensus 81 ----~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~---~~~-~------- 145 (203)
..++|+||..........+.. ....|..+|+|++++ +++.+|+..|..++.||.+|| .|+ .
T Consensus 72 ~~~~~~G~ILDGfPRt~~Qa~~Le~---~~~~PDlVI~LDvpd-evlleRl~gR~~dp~tG~iYh~~~~pP~~~~~~~rL 147 (505)
T PLN02842 72 EDAKEKGWLLDGYPRSFAQAQSLEK---LKIRPDIFILLDVPD-EILIDRCVGRRLDPVTGKIYHIKNFPPESEEIKARL 147 (505)
T ss_pred ccccCCcEEEeCCCCcHHHHHHHHh---cCCCCCEEEEEeCCH-HHHHHHHhccccccccCCccccccCCCCcccccccc
Confidence 346999995444333333222 223455788888866 589999999999999998887 222 1
Q ss_pred CCCCCCCHHHHHHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 146 SWHKPSTWRDLERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 146 ~~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
..+.+++.+.+.+|++.|.... .++.. ..+.||++. +++++.++|.+.|..
T Consensus 148 ~~R~DD~eE~IkkRL~~Y~~~t~pIl~~Y~~--rl~~IDAsq--s~EeVfeeI~~iL~~ 202 (505)
T PLN02842 148 ITRPDDTEEKVKARLQIYKKNAEAILSTYSD--IMVKIDGNR--PKEVVFEEISSLLSQ 202 (505)
T ss_pred ccCCCCCHHHHHHHHHHHHHHhhhHHHhcCc--EEEEEECCC--CHHHHHHHHHHHHHH
Confidence 1345788999999998886543 23432 467899999 999999999998864
No 25
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.80 E-value=2e-19 Score=126.39 Aligned_cols=119 Identities=29% Similarity=0.391 Sum_probs=90.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+++.|++.+++.+++.|.++..+...... .+. .........++.+...+...+..
T Consensus 4 ~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~----~~~----------~~~~~~~~~~~~~~~~~~~~l~~ 69 (143)
T PF13671_consen 4 LCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPP----SPS----------DYIEAEERAYQILNAAIRKALRN 69 (143)
T ss_dssp EEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSG----CCC----------CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccc----cch----------hHHHHHHHHHHHHHHHHHHHHHc
Confidence 5899999999999999999999999999998765431000 110 00112234556667778888899
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCC
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEG 134 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~ 134 (203)
|.++|+|.++.....++.+..+++..+.++.+|+|.+++ +++.+|+..|....
T Consensus 70 g~~~vvd~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~-~~~~~R~~~R~~~~ 122 (143)
T PF13671_consen 70 GNSVVVDNTNLSREERARLRELARKHGYPVRVVYLDAPE-ETLRERLAQRNREG 122 (143)
T ss_dssp T-EEEEESS--SHHHHHHHHHHHHHCTEEEEEEEECHHH-HHHHHHHHTTHCCC
T ss_pred CCCceeccCcCCHHHHHHHHHHHHHcCCeEEEEEEECCH-HHHHHHHHhcCCcc
Confidence 999999999888889999999999999999999999765 68999999997763
No 26
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.80 E-value=4.8e-18 Score=122.07 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=103.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|++.++..+++.|++...... .. +..+.+... .....+ +..+.+.+...+..
T Consensus 3 l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~-~~-~~~~~~~~~------~~~~~~-----~~~~~~~~~~~l~~ 69 (163)
T TIGR01313 3 LMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANI-EK-MSAGIPLND------DDRWPW-----LQNLNDASTAAAAK 69 (163)
T ss_pred EECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHH-HH-HHcCCCCCh------hhHHHH-----HHHHHHHHHHHHhc
Confidence 589999999999999999999999999998432110 00 000111100 000111 23334445556666
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHh
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLL 160 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 160 (203)
+..+|+|.++....+++.++ ..+.++.+|+|.+++ +++.+|+..|..+. ...+.+..+.
T Consensus 70 ~~~~Vi~~t~~~~~~r~~~~----~~~~~~~~i~l~~~~-e~~~~R~~~R~~~~----------------~~~~~i~~~~ 128 (163)
T TIGR01313 70 NKVGIITCSALKRHYRDILR----EAEPNLHFIYLSGDK-DVILERMKARKGHF----------------MKADMLESQF 128 (163)
T ss_pred CCCEEEEecccHHHHHHHHH----hcCCCEEEEEEeCCH-HHHHHHHHhccCCC----------------CCHHHHHHHH
Confidence 76678888776666665543 457778889998765 58999999996431 2345566665
Q ss_pred hhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 161 EGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
..+... ... +...++||+++ +++++..+|.+.+-
T Consensus 129 ~~~~~~-~~~--e~~~~~id~~~--~~~~~~~~~~~~~~ 162 (163)
T TIGR01313 129 AALEEP-LAD--ETDVLRVDIDQ--PLEGVEEDCIAVVL 162 (163)
T ss_pred HHhCCC-CCC--CCceEEEECCC--CHHHHHHHHHHHHh
Confidence 544321 111 12569999999 99999999988764
No 27
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.79 E-value=5.3e-18 Score=123.22 Aligned_cols=161 Identities=17% Similarity=0.145 Sum_probs=102.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc--eechhhHhhhhhhhhh----hhhccCCCccccchHHHHHhhhhhhhhHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIP--LIDKDDVRDCTLSLQQ----TLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIA 74 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~--~i~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (203)
|+|+|||||||+|+.|++.++.. +++.|.++..+..... .+.. .+.+ ...........|..+...+
T Consensus 7 l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~y~~~~~~~ 78 (175)
T cd00227 7 LNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEF-DGDG-------GVSPGPEFRLLEGAWYEAV 78 (175)
T ss_pred EECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhccccccccc-CccC-------CcccchHHHHHHHHHHHHH
Confidence 58999999999999999988654 4578888665331100 0000 0000 0000111224566677778
Q ss_pred HHHhhCCCcEEEeCCCC-chHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCH
Q 039424 75 STQLKLGVSVVVDSPLS-RRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTW 153 (203)
Q Consensus 75 ~~~l~~~~~vIid~~~~-~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~ 153 (203)
...+.+|.+||+|..+. ...+++.+..+ .+.++.+|+|.|++ +++.+|+..|+... ...
T Consensus 79 ~~~l~~G~~VIvD~~~~~~~~~r~~~~~~---~~~~~~~v~l~~~~-~~l~~R~~~R~~~~----------------~~~ 138 (175)
T cd00227 79 AAMARAGANVIADDVFLGRAALQDCWRSF---VGLDVLWVGVRCPG-EVAEGRETARGDRV----------------PGQ 138 (175)
T ss_pred HHHHhCCCcEEEeeeccCCHHHHHHHHHh---cCCCEEEEEEECCH-HHHHHHHHhcCCcc----------------chH
Confidence 88889999999999766 45555554443 35778999999876 58999999986431 111
Q ss_pred HHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 154 RDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 154 e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
.......+ ..+....++|||+. .++++++++|++.+
T Consensus 139 --~~~~~~~~------~~~~~~dl~iDts~-~s~~e~a~~i~~~l 174 (175)
T cd00227 139 --ARKQARVV------HAGVEYDLEVDTTH-KTPIECARAIAARV 174 (175)
T ss_pred --HHHHHHHh------cCCCcceEEEECCC-CCHHHHHHHHHHhc
Confidence 11111111 11223468999998 79999999999876
No 28
>COG0645 Predicted kinase [General function prediction only]
Probab=99.79 E-value=3.2e-18 Score=119.91 Aligned_cols=143 Identities=27% Similarity=0.326 Sum_probs=116.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
+.|.|||||||+|+.|++.+|..+|.+|.+++.+.+.... ...| .+.|........|..+.......+..
T Consensus 6 ~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~--~r~~--------~g~ys~~~~~~vy~~l~~~A~l~l~~ 75 (170)
T COG0645 6 VGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEE--TRGP--------AGLYSPAATAAVYDELLGRAELLLSS 75 (170)
T ss_pred EecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCccc--ccCC--------CCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 4699999999999999999999999999999988751100 0111 24455666678899999999999999
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHh
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLL 160 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 160 (203)
|.+||+|+.+..+..++.+..++...+.++..|.|.++. +++..|+.+|.... .+.++..+...+
T Consensus 76 G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~-~v~~~rl~aR~~d~--------------sDA~~~il~~q~ 140 (170)
T COG0645 76 GHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPE-EVLRGRLAARKGDA--------------SDATFDILRVQL 140 (170)
T ss_pred CCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcH-HHHHHHHHHhCCCc--------------ccchHHHHHHHH
Confidence 999999999999999999999999999999999999765 69999999997743 346777777777
Q ss_pred hhhcCCCC
Q 039424 161 EGYCGCTE 168 (203)
Q Consensus 161 ~~~~~~~~ 168 (203)
..+++..+
T Consensus 141 ~~~~~~~~ 148 (170)
T COG0645 141 AEDEPWTE 148 (170)
T ss_pred hhhCCccc
Confidence 76665544
No 29
>PRK01184 hypothetical protein; Provisional
Probab=99.79 E-value=5.8e-18 Score=123.98 Aligned_cols=172 Identities=20% Similarity=0.288 Sum_probs=100.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhh-
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLK- 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~- 79 (203)
|+|+|||||||+++ +++++|++++++|++.+...... . .+.... .. ...............+...+...+.
T Consensus 6 l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~-~----~~~~~~-~~-g~~~~~~~~~~~~~~~~~~~~~~i~~ 77 (184)
T PRK01184 6 VVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKR-G----LEPTDE-NI-GKVAIDLRKELGMDAVAKRTVPKIRE 77 (184)
T ss_pred EECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHc-C----CCCCcH-HH-HHHHHHHHHHHChHHHHHHHHHHHHh
Confidence 58999999999997 67799999999987755432100 0 110000 00 0101111111111222222223332
Q ss_pred -CCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHH
Q 039424 80 -LGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLER 158 (203)
Q Consensus 80 -~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 158 (203)
.+..||+|+.. .....+.+++.. +..+.+|++.|++ +++.+|+..|++.. ...+.+.+.+
T Consensus 78 ~~~~~vvidg~r-~~~e~~~~~~~~---~~~~~~i~v~~~~-~~~~~Rl~~R~~~~--------------d~~~~~~~~~ 138 (184)
T PRK01184 78 KGDEVVVIDGVR-GDAEVEYFRKEF---PEDFILIAIHAPP-EVRFERLKKRGRSD--------------DPKSWEELEE 138 (184)
T ss_pred cCCCcEEEeCCC-CHHHHHHHHHhC---CcccEEEEEECCH-HHHHHHHHHcCCCC--------------ChhhHHHHHH
Confidence 35679999973 434455554443 3456788888765 58999999886431 1124677888
Q ss_pred HhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 159 LLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+.+.+...-......+++|++++ +++++..++.+.+..+
T Consensus 139 r~~~q~~~~~~~~~~~ad~vI~N~~--~~~~l~~~v~~~~~~~ 179 (184)
T PRK01184 139 RDERELSWGIGEVIALADYMIVNDS--TLEEFRARVRKLLERI 179 (184)
T ss_pred HHHHHhccCHHHHHHhcCEEEeCCC--CHHHHHHHHHHHHHHH
Confidence 7776533221111133668999998 9999999998887643
No 30
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.77 E-value=1.3e-17 Score=120.65 Aligned_cols=165 Identities=20% Similarity=0.328 Sum_probs=111.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|.|+|||||||+|+.|+++++++|+|++++.+.-.. ..++.+.... ..+..+.+ +....+...+...+.+
T Consensus 5 ilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~------~~t~lg~~~k--~~i~~g~l--v~d~i~~~~v~~rl~~ 74 (178)
T COG0563 5 ILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIA------ERTELGEEIK--KYIDKGEL--VPDEIVNGLVKERLDE 74 (178)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhc------cCChHHHHHH--HHHHcCCc--cchHHHHHHHHHHHHh
Confidence 579999999999999999999999999999765321 1122211110 01111111 2333344444444443
Q ss_pred C---CcEEEeCCCCchHhHHHHHHHHHhhCCe-EEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHH
Q 039424 81 G---VSVVVDSPLSRRAHLEKLVKLAGEMRAG-LVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDL 156 (203)
Q Consensus 81 ~---~~vIid~~~~~~~~~~~~~~~~~~~~~~-~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~ 156 (203)
. .++|+|+........+.+.......|.+ ..++.+..+. +.+..|+..|... .+++++.+
T Consensus 75 ~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~-~~~~~r~~~r~~r---------------~dd~~~~~ 138 (178)
T COG0563 75 ADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPE-ELLLERLLGRRVR---------------EDDNEETV 138 (178)
T ss_pred hcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCH-HHHHHHHhCcccc---------------ccCCHHHH
Confidence 2 2799999777666767777776666644 3466666554 7999999998531 24688999
Q ss_pred HHHhhhhcCCCC----CCCCCCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 157 ERLLEGYCGCTE----YDVGDVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 157 ~~~~~~~~~~~~----~~~~~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
.+|+..|..... ++. +.||+.. +++++.+.+.+.+
T Consensus 139 ~~R~~~y~~~~~pli~~y~-----~~id~~~--~i~~v~~~i~~~l 177 (178)
T COG0563 139 KKRLKVYHEQTAPLIEYYS-----VTIDGSG--EIEEVLADILKAL 177 (178)
T ss_pred HHHHHHHHhcccchhhhhe-----eeccCCC--CHHHHHHHHHHhh
Confidence 999998865443 332 7899999 9999999998765
No 31
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.77 E-value=2.8e-17 Score=117.91 Aligned_cols=161 Identities=20% Similarity=0.186 Sum_probs=102.0
Q ss_pred CCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh-hC
Q 039424 2 KGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL-KL 80 (203)
Q Consensus 2 ~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l-~~ 80 (203)
.|+|||||||+++.|+..+|..+++.|.+..... ... +..+.+... .....++ ..+...+.... ..
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~-~~~-~~~g~~~~~------~~~~~~~-----~~~~~~~~~~~~~~ 67 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRN-IEK-MASGEPLND------DDRKPWL-----QALNDAAFAMQRTN 67 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhh-hcc-ccCCCCCCh------hhHHHHH-----HHHHHHHHHHHHcC
Confidence 5999999999999999999999999987621100 000 001111111 1111111 11111121222 23
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHh
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLL 160 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 160 (203)
+..+|+ +++....+++.++ ..+.++.+|+|.|++ +++.+|+.+|.++. .+.+.+...+
T Consensus 68 ~~~viv-~s~~~~~~r~~~~----~~~~~~~~v~l~a~~-~~l~~Rl~~R~~~~----------------a~~~vl~~Q~ 125 (163)
T PRK11545 68 KVSLIV-CSALKKHYRDLLR----EGNPNLSFIYLKGDF-DVIESRLKARKGHF----------------FKTQMLVTQF 125 (163)
T ss_pred CceEEE-EecchHHHHHHHH----ccCCCEEEEEEECCH-HHHHHHHHhccCCC----------------CCHHHHHHHH
Confidence 444555 6666666655544 457899999999866 59999999997542 4677777777
Q ss_pred hhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhccC
Q 039424 161 EGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHID 202 (203)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~~ 202 (203)
..++++...+ ...++||++. ++++++.+++..+.+.+
T Consensus 126 ~~~ep~~~~e---~~~~~id~~~--~~~~~~~~~~~~~~~~~ 162 (163)
T PRK11545 126 ETLQEPGADE---TDVLVVDIDQ--PLEGVVASTIEVIKKGK 162 (163)
T ss_pred HHcCCCCCCC---CCEEEEeCCC--CHHHHHHHHHHHHHHhc
Confidence 6665443322 2458999999 99999999999987654
No 32
>PRK13948 shikimate kinase; Provisional
Probab=99.77 E-value=1.2e-17 Score=121.36 Aligned_cols=158 Identities=16% Similarity=0.156 Sum_probs=97.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHH-HHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVI-WKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~l~ 79 (203)
|+|+|||||||+++.|++.+|++++|+|.++++..+... ... ....++..++.+ .+.+...+.
T Consensus 15 LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si---------------~~i-f~~~Ge~~fR~~E~~~l~~l~~ 78 (182)
T PRK13948 15 LAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSI---------------PEI-FRHLGEAYFRRCEAEVVRRLTR 78 (182)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCH---------------HHH-HHHhCHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999877654211 111 111122233333 223334344
Q ss_pred CCCcEEEeC--CCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH
Q 039424 80 LGVSVVVDS--PLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE 157 (203)
Q Consensus 80 ~~~~vIid~--~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~ 157 (203)
.+..||.-| .+..++++..+.+ .+ .+|+|.+++ +.+.+|+..+ ..| ... ..+..+.+.
T Consensus 79 ~~~~VIa~GgG~v~~~~n~~~l~~----~g---~vV~L~~~~-e~l~~Rl~~~-~RP----ll~-------~~~~~~~l~ 138 (182)
T PRK13948 79 LDYAVISLGGGTFMHEENRRKLLS----RG---PVVVLWASP-ETIYERTRPG-DRP----LLQ-------VEDPLGRIR 138 (182)
T ss_pred cCCeEEECCCcEEcCHHHHHHHHc----CC---eEEEEECCH-HHHHHHhcCC-CCC----CCC-------CCChHHHHH
Confidence 444455543 3455556555332 23 578888766 5899999532 222 110 112345666
Q ss_pred HHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 158 RLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.++.+. .+|.. ..++||+++ .++++++.+|.+.+..
T Consensus 139 ~l~~~R~---~~Y~~--a~~~i~t~~-~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 139 TLLNERE---PVYRQ--ATIHVSTDG-RRSEEVVEEIVEKLWA 175 (182)
T ss_pred HHHHHHH---HHHHh--CCEEEECCC-CCHHHHHHHHHHHHHH
Confidence 6666553 22333 568999998 7999999999988764
No 33
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.77 E-value=9.5e-18 Score=131.87 Aligned_cols=157 Identities=24% Similarity=0.236 Sum_probs=106.5
Q ss_pred CCCCCCCChHHHHHHHHHhC-CCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASAL-KIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 79 (203)
++|+|||||||+|+.|++.+ ++.+++.|.+++.+.... +... ..+...-...........+...+.
T Consensus 7 l~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~-------~~~~------~~~~~~~~~~~~~~~~~~~~~~l~ 73 (300)
T PHA02530 7 TVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHG-------EWGE------YKFTKEKEDLVTKAQEAAALAALK 73 (300)
T ss_pred EEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCC-------cccc------cccChHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999 899999999977643211 0000 000000011223344555666678
Q ss_pred CCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH--
Q 039424 80 LGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE-- 157 (203)
Q Consensus 80 ~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~-- 157 (203)
.|..+|+|+++.....++.+..+++..+..+.+|++.++ .+++.+|+..|+.+. ...+.+.
T Consensus 74 ~g~~vIid~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~-~e~~~~R~~~R~~~~----------------~~~~~i~~~ 136 (300)
T PHA02530 74 SGKSVIISDTNLNPERRRKWKELAKELGAEFEEKVFDVP-VEELVKRNRKRGERA----------------VPEDVLRSM 136 (300)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCC-HHHHHHHHHccCcCC----------------CCHHHHHHH
Confidence 888999999988888888888888888888888999875 569999999996553 2344444
Q ss_pred -HHhhhhcCCCC--C--CCCCCCeEEEecCCCCChHH
Q 039424 158 -RLLEGYCGCTE--Y--DVGDVPKLTVDTTASVGFQE 189 (203)
Q Consensus 158 -~~~~~~~~~~~--~--~~~~~~~~~id~~~~~~~~e 189 (203)
++++.+.+... + +......+++|.++ ++.+
T Consensus 137 ~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dg--tl~~ 171 (300)
T PHA02530 137 FKQMKEYRGLVWPVYTADPGLPKAVIFDIDG--TLAK 171 (300)
T ss_pred HHHHHHhcCCCCceeccCCCCCCEEEEECCC--cCcC
Confidence 67776654311 1 11223568888887 5443
No 34
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.77 E-value=1.8e-17 Score=119.29 Aligned_cols=163 Identities=19% Similarity=0.186 Sum_probs=110.9
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQ 77 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (203)
++|+|||||||+|+.|++.+ ++.+++...-+....- .+...|.. ...|.....+..+..+...
T Consensus 6 lTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~----~DEslpi~------ke~yres~~ks~~rlldSa---- 71 (261)
T COG4088 6 LTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGIL----WDESLPIL------KEVYRESFLKSVERLLDSA---- 71 (261)
T ss_pred EecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhhee----cccccchH------HHHHHHHHHHHHHHHHHHH----
Confidence 58999999999999999888 4555544432111110 00001110 1233333333333322222
Q ss_pred hhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH
Q 039424 78 LKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE 157 (203)
Q Consensus 78 l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~ 157 (203)
++ +.-||+|..+....++.++...++....++.+|++.++++ +|.+|...|+.. -..|.+.
T Consensus 72 lk-n~~VIvDdtNYyksmRrqL~ceak~~~tt~ciIyl~~plD-tc~rrN~ergep-----------------ip~Evl~ 132 (261)
T COG4088 72 LK-NYLVIVDDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLD-TCLRRNRERGEP-----------------IPEEVLR 132 (261)
T ss_pred hc-ceEEEEecccHHHHHHHHHHHHHHhcCCceEEEEEccCHH-HHHHhhccCCCC-----------------CCHHHHH
Confidence 22 5679999988888899999999999999999999999875 899999777653 3678888
Q ss_pred HHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 158 RLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
+.+..|++......|..+.++||++. ...+.+.-|...+
T Consensus 133 qly~RfEePn~~~rWDspll~id~~d--~~t~~IDfiesvl 171 (261)
T COG4088 133 QLYDRFEEPNPDRRWDSPLLVIDDSD--VSTEVIDFIESVL 171 (261)
T ss_pred HHHHhhcCCCCCccccCceEEEeccc--ccccchhHHHHHH
Confidence 88999998888889999999999665 4444554444443
No 35
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.77 E-value=3e-17 Score=112.74 Aligned_cols=163 Identities=18% Similarity=0.235 Sum_probs=113.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhh--hhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQT--LQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 78 (203)
+.|++||||||+++.|+++|++.|++.|++. +..+. |..+.|..+ .-.++|+.. +.......+
T Consensus 17 vmGvsGsGKSTigk~L~~~l~~~F~dgDd~H----p~~NveKM~~GipLnD------~DR~pWL~~-----i~~~~~~~l 81 (191)
T KOG3354|consen 17 VMGVSGSGKSTIGKALSEELGLKFIDGDDLH----PPANVEKMTQGIPLND------DDRWPWLKK-----IAVELRKAL 81 (191)
T ss_pred EEecCCCChhhHHHHHHHHhCCcccccccCC----CHHHHHHHhcCCCCCc------ccccHHHHH-----HHHHHHHHh
Confidence 4699999999999999999999999999993 22222 666677644 334677733 333444555
Q ss_pred hCCCcEEEeCCCCchHhHHHHHHHHH-----hh-CCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCC
Q 039424 79 KLGVSVVVDSPLSRRAHLEKLVKLAG-----EM-RAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPST 152 (203)
Q Consensus 79 ~~~~~vIid~~~~~~~~~~~~~~~~~-----~~-~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~ 152 (203)
..++.+|+-++.....+|+.++...+ .. ...+.+|++..+ .|++..|+..|.++- ..
T Consensus 82 ~~~q~vVlACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s-~evi~~Rl~~R~gHF----------------Mp 144 (191)
T KOG3354|consen 82 ASGQGVVLACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSAS-FEVILKRLKKRKGHF----------------MP 144 (191)
T ss_pred hcCCeEEEEhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeecc-HHHHHHHHhhccccc----------------CC
Confidence 68899999999888888888776333 11 245778888875 569999999998873 23
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 153 WRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 153 ~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
.+-++..++..+. +. ..+.+.+.|+... .++++++..|...+.
T Consensus 145 ~~lleSQf~~LE~-p~--~~e~div~isv~~-~~~e~iv~tI~k~~~ 187 (191)
T KOG3354|consen 145 ADLLESQFATLEA-PD--ADEEDIVTISVKT-YSVEEIVDTIVKMVA 187 (191)
T ss_pred HHHHHHHHHhccC-CC--CCccceEEEeecc-CCHHHHHHHHHHHHH
Confidence 3444444433221 11 2233678888886 599999999988764
No 36
>PRK13946 shikimate kinase; Provisional
Probab=99.76 E-value=2e-17 Score=121.05 Aligned_cols=160 Identities=19% Similarity=0.225 Sum_probs=99.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHH-HHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVI-WKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~l~ 79 (203)
|+|+|||||||+++.|++.+|++++++|.+.+...+... ...+ ...++..+..+ .+.+...+.
T Consensus 15 l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~~~---------------~e~~-~~~ge~~~~~~e~~~l~~l~~ 78 (184)
T PRK13946 15 LVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARMTI---------------AEIF-AAYGEPEFRDLERRVIARLLK 78 (184)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCCCH---------------HHHH-HHHCHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999998665442110 0111 11111112222 334444444
Q ss_pred CCCcEEEeC--CCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH
Q 039424 80 LGVSVVVDS--PLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE 157 (203)
Q Consensus 80 ~~~~vIid~--~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~ 157 (203)
.+..||..+ .+..+..++.+.. .+ .+|+|.+++ +++.+|+..|...| +.. ..+..+.+.
T Consensus 79 ~~~~Vi~~ggg~~~~~~~r~~l~~----~~---~~v~L~a~~-e~~~~Rl~~r~~rp----~~~-------~~~~~~~i~ 139 (184)
T PRK13946 79 GGPLVLATGGGAFMNEETRAAIAE----KG---ISVWLKADL-DVLWERVSRRDTRP----LLR-------TADPKETLA 139 (184)
T ss_pred cCCeEEECCCCCcCCHHHHHHHHc----CC---EEEEEECCH-HHHHHHhcCCCCCC----cCC-------CCChHHHHH
Confidence 555566654 3555555555432 23 578998765 58999999886653 010 112345555
Q ss_pred HHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 158 RLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+..+.+.+ ++.. .+++||+++ .+++++++.|.+.+..+
T Consensus 140 ~~~~~R~~---~y~~--~dl~i~~~~-~~~~~~~~~i~~~i~~~ 177 (184)
T PRK13946 140 RLMEERYP---VYAE--ADLTVASRD-VPKEVMADEVIEALAAY 177 (184)
T ss_pred HHHHHHHH---HHHh--CCEEEECCC-CCHHHHHHHHHHHHHHh
Confidence 55555443 2322 358889998 89999999999988753
No 37
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.75 E-value=2e-17 Score=118.79 Aligned_cols=166 Identities=18% Similarity=0.171 Sum_probs=99.1
Q ss_pred CCCCCCCChHHHHHHHHHhCC--CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASALK--IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 78 (203)
|+|+|.|||||+|+.|.+.+. |.+++.|.+++.+.+.... ...+........ .........+..+...+....
T Consensus 6 LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~----~~~g~~~~~~~~-~~~~~~~~~~~~~~~~iaa~a 80 (174)
T PF07931_consen 6 LNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYR----PGDGLEPAGDRP-DGGPLFRRLYAAMHAAIAAMA 80 (174)
T ss_dssp EEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGT----STTSEEEETTSE-EE-HHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCccccc----CCccccccccCC-chhHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999996 5578889998753321110 000000000000 001122344566777788888
Q ss_pred hCCCcEEEeCCCCchHh-HHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH
Q 039424 79 KLGVSVVVDSPLSRRAH-LEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE 157 (203)
Q Consensus 79 ~~~~~vIid~~~~~~~~-~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~ 157 (203)
..|.+||+|..+....+ .+.++++.. +.++.+|-+.|+.+ ++.+|-..|+..+ ... .
T Consensus 81 ~aG~~VIvD~v~~~~~~l~d~l~~~L~--~~~vl~VgV~Cple-il~~RE~~RgDR~----------------~G~---a 138 (174)
T PF07931_consen 81 RAGNNVIVDDVFLGPRWLQDCLRRLLA--GLPVLFVGVRCPLE-ILERRERARGDRP----------------IGL---A 138 (174)
T ss_dssp HTT-EEEEEE--TTTHHHHHHHHHHHT--TS-EEEEEEE--HH-HHHHHHHHHTSSS----------------TTH---H
T ss_pred hCCCCEEEecCccCcHHHHHHHHHHhC--CCceEEEEEECCHH-HHHHHHHhcCCcc----------------hHH---H
Confidence 89999999997666655 555545443 78899999999875 8999999998653 121 1
Q ss_pred HHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 158 RLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
+.. ++ ........++.|||+. .++++++++|++.++
T Consensus 139 ~~q--~~---~Vh~~~~YDleVDTs~-~sp~ecA~~I~~~~~ 174 (174)
T PF07931_consen 139 AWQ--AE---HVHEGGRYDLEVDTSA-TSPEECAREILARLE 174 (174)
T ss_dssp HHH--TT---GGGTT---SEEEETTS-S-HHHHHHHHHTT--
T ss_pred HHH--Hh---hcccCCCCCEEEECCC-CCHHHHHHHHHHHhC
Confidence 111 11 1122233569999999 899999999998764
No 38
>PRK00625 shikimate kinase; Provisional
Probab=99.74 E-value=5.7e-17 Score=116.98 Aligned_cols=159 Identities=17% Similarity=0.150 Sum_probs=89.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+++.|+++++++++|+|.+.+...+. ..... ....+ ...++..+......+...+..
T Consensus 5 LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~--------~~~~~---i~eif-~~~Ge~~fr~~E~~~l~~l~~ 72 (173)
T PRK00625 5 LCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHG--------ALYSS---PKEIY-QAYGEEGFCREEFLALTSLPV 72 (173)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCC--------CCCCC---HHHHH-HHHCHHHHHHHHHHHHHHhcc
Confidence 5899999999999999999999999999997653221 00000 01111 112223333333333333444
Q ss_pred CCcEEEeCC--CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHH
Q 039424 81 GVSVVVDSP--LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLER 158 (203)
Q Consensus 81 ~~~vIid~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 158 (203)
+..||..|. ....+.++. .+..+ .+|+|.+++ +++.+|+..|+..+ .....+.+.+
T Consensus 73 ~~~VIs~GGg~~~~~e~~~~----l~~~~---~Vv~L~~~~-e~l~~Rl~~R~~~~--------------~~~~~~~~~~ 130 (173)
T PRK00625 73 IPSIVALGGGTLMIEPSYAH----IRNRG---LLVLLSLPI-ATIYQRLQKRGLPE--------------RLKHAPSLEE 130 (173)
T ss_pred CCeEEECCCCccCCHHHHHH----HhcCC---EEEEEECCH-HHHHHHHhcCCCCc--------------ccCcHHHHHH
Confidence 444665552 333333333 22223 688998765 58999999885432 0112344444
Q ss_pred HhhhhcCCCCCCCCCCCeEE------EecCCCCChHHHHHHHHHHH
Q 039424 159 LLEGYCGCTEYDVGDVPKLT------VDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~------id~~~~~~~~e~~~~i~~~i 198 (203)
.++.+.+. |... ++++ ++|++ .++..+++.++..+
T Consensus 131 ll~~R~~~--Y~~~--ad~~i~~~~~~~~~~-~~~~~~~~~~~~~~ 171 (173)
T PRK00625 131 ILSQRIDR--MRSI--ADYIFSLDHVAETSS-ESLMRACQSFCTLL 171 (173)
T ss_pred HHHHHHHH--HHHH--CCEEEeCCCcccCCC-CCHHHHHHHHHHHh
Confidence 44443321 2222 2233 55566 68888888888776
No 39
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.74 E-value=3.6e-17 Score=115.88 Aligned_cols=146 Identities=22% Similarity=0.216 Sum_probs=95.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh-h
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL-K 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l-~ 79 (203)
|+|+|||||||+|+.|++.+++.+++.|.++...... .+..+.+... .....+. ..+.......+ .
T Consensus 4 l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~--~~~~~~~~~~------~~~~~~~-----~~~~~~~~~~l~~ 70 (150)
T cd02021 4 VMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIA--KMAAGIPLND------EDRWPWL-----QALTDALLAKLAS 70 (150)
T ss_pred EEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHH--HHHcCCCCCc------cchhhHH-----HHHHHHHHHHHHh
Confidence 5799999999999999999999999999997642210 0111111111 0001111 11112222222 4
Q ss_pred CCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHH
Q 039424 80 LGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERL 159 (203)
Q Consensus 80 ~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 159 (203)
.+.++|+|+++....+++.+..++ .+.++.+|+|.+++ +++.+|+.+|..+. ...+.+...
T Consensus 71 ~~~~vVid~~~~~~~~r~~~~~~~--~~~~~~~v~l~~~~-~~~~~R~~~R~~~~----------------~~~~~~~~~ 131 (150)
T cd02021 71 AGEGVVVACSALKRIYRDILRGGA--ANPRVRFVHLDGPR-EVLAERLAARKGHF----------------MPADLLDSQ 131 (150)
T ss_pred CCCCEEEEeccccHHHHHHHHhcC--CCCCEEEEEEECCH-HHHHHHHHhcccCC----------------CCHHHHHHH
Confidence 688899999888888888877776 57788899999876 58999999996542 236667777
Q ss_pred hhhhcCCCCCCCCCCCeEEEec
Q 039424 160 LEGYCGCTEYDVGDVPKLTVDT 181 (203)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~id~ 181 (203)
.+.++++.. .....++||+
T Consensus 132 ~~~~~~p~~---~~~~~~~~~~ 150 (150)
T cd02021 132 FETLEPPGE---DEEDVIVIDV 150 (150)
T ss_pred HHHhcCCCC---CCCCeEEccC
Confidence 776664433 2336677774
No 40
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.74 E-value=1.2e-16 Score=116.11 Aligned_cols=174 Identities=17% Similarity=0.196 Sum_probs=105.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh--hhhhhhhccC-----------CCcccc---------chHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL--SLQQTLQKTT-----------PHHQHA---------TSAAAAA 58 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~--~~~~~~~~~~-----------~~~~~~---------~~~~~~~ 58 (203)
|-||+||||||+|+.||++||+.+++++.+|+.+. .++..+...+ +..... +......
T Consensus 9 IDGPagsGKsTvak~lA~~Lg~~yldTGamYRa~a~~~l~~~~~~~d~~~~~~l~~~~~i~f~~~~~v~l~gedvs~~ir 88 (222)
T COG0283 9 IDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRAVALAALKHGVDLDDEDALVALAKELDISFVNDDRVFLNGEDVSEEIR 88 (222)
T ss_pred EeCCCccChHHHHHHHHHHhCCCeecccHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCceecccceEEECCchhhhhhh
Confidence 46999999999999999999999999999988733 2222210000 000000 0000000
Q ss_pred hhhhhh---------hhHHHHHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHh
Q 039424 59 SSLLND---------LSYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEG 129 (203)
Q Consensus 59 ~~~~~~---------~~~~~l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~ 129 (203)
...... .....+.+........+.++|+||.-..-- .+ ++.+ +-+||++++++-.+||..+
T Consensus 89 ~~~V~~~aS~vA~~p~VR~~l~~~Qr~~a~~~~~~V~dGRDiGTv-------V~--PdA~-lKiFLtAS~e~RA~RR~~q 158 (222)
T COG0283 89 TEEVGNAASKVAAIPEVREALVKLQRAFAKNGPGIVADGRDIGTV-------VF--PDAE-LKIFLTASPEERAERRYKQ 158 (222)
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEecCCCcce-------EC--CCCC-eEEEEeCCHHHHHHHHHHH
Confidence 111110 112223333333344456799999311100 00 1223 4689999999999999988
Q ss_pred cCCCCCCCccCCCCCCCCCCCCCHHHHHHHhhhhcCCCC-----CCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 130 RGNEGGCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTE-----YDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 130 R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-----~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
....+ . ...++++.+.+..++.... -.+.+...++|||++ |+.+|++++|+.++.
T Consensus 159 ~~~~g-------------~-~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~-msieeVv~~il~~~~ 218 (222)
T COG0283 159 LQAKG-------------F-SEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSS-LSIEEVVEKILELIR 218 (222)
T ss_pred HHhcc-------------C-cchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCC-CcHHHHHHHHHHHHH
Confidence 76543 1 1237888887777654432 123466889999999 999999999999886
No 41
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.74 E-value=2.6e-17 Score=121.33 Aligned_cols=167 Identities=22% Similarity=0.248 Sum_probs=106.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhh----hhhc--cC----CCcc--cc-----chHHHHHhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQ----TLQK--TT----PHHQ--HA-----TSAAAAASSLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~----~~~~--~~----~~~~--~~-----~~~~~~~~~~~~ 63 (203)
|+|++||||||+++.|++ +|++++++|.+.+.+..... .+.. +. +.+. .. .+.......++.
T Consensus 7 ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~~L~ 85 (194)
T PRK00081 7 LTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEARKKLE 85 (194)
T ss_pred EECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHHHHHHH
Confidence 589999999999999997 99999999999777542110 0000 00 0111 00 011122234455
Q ss_pred hhhHHHHHHHHHHHhhCC---CcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccC
Q 039424 64 DLSYDVIWKIASTQLKLG---VSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVG 140 (203)
Q Consensus 64 ~~~~~~l~~~~~~~l~~~---~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~ 140 (203)
...++.+.+.+...+... ..+|+|.+...+..+.. .+ + .+|++.+++ +++.+|+..|++.
T Consensus 86 ~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e~~~~~---~~-----D-~vi~V~a~~-e~~~~Rl~~R~~~------- 148 (194)
T PRK00081 86 AILHPLIREEILEQLQEAESSPYVVLDIPLLFENGLEK---LV-----D-RVLVVDAPP-ETQLERLMARDGL------- 148 (194)
T ss_pred HHHHHHHHHHHHHHHHHcccCCEEEEEehHhhcCCchh---hC-----C-eEEEEECCH-HHHHHHHHHcCCC-------
Confidence 566666666555544332 56999998655432221 22 1 467777655 5899999998543
Q ss_pred CCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 141 DDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 141 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+.+..+++.+.+..+.. ...+++|+|++ +++++.+++...++.
T Consensus 149 -----------s~e~~~~ri~~Q~~~~~~~--~~ad~vI~N~g--~~e~l~~qv~~i~~~ 193 (194)
T PRK00081 149 -----------SEEEAEAIIASQMPREEKL--ARADDVIDNNG--DLEELRKQVERLLQE 193 (194)
T ss_pred -----------CHHHHHHHHHHhCCHHHHH--HhCCEEEECCC--CHHHHHHHHHHHHHh
Confidence 5678888887664432222 23569999999 999999999988764
No 42
>PRK13947 shikimate kinase; Provisional
Probab=99.73 E-value=4.5e-17 Score=117.90 Aligned_cols=159 Identities=16% Similarity=0.177 Sum_probs=90.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.||+.+|+++++.|.+.+...+... ...+ ...++..+......+...+..
T Consensus 6 l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~---------------~~~~-~~~ge~~~~~~e~~~~~~l~~ 69 (171)
T PRK13947 6 LIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTV---------------AEIF-EKDGEVRFRSEEKLLVKKLAR 69 (171)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcH---------------HHHH-HHhChHHHHHHHHHHHHHHhh
Confidence 579999999999999999999999999999766443110 0000 011111222222222233333
Q ss_pred CCcEEEe-CC--CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH
Q 039424 81 GVSVVVD-SP--LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE 157 (203)
Q Consensus 81 ~~~vIid-~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~ 157 (203)
..++|+. +. ......+.. ....+ .+|+|.+++ +.+.+|+..|..++. . ......+.+.
T Consensus 70 ~~~~vi~~g~g~vl~~~~~~~----l~~~~---~vv~L~~~~-~~l~~Rl~~r~~rp~----~-------~~~~~~~~i~ 130 (171)
T PRK13947 70 LKNLVIATGGGVVLNPENVVQ----LRKNG---VVICLKARP-EVILRRVGKKKSRPL----L-------MVGDPEERIK 130 (171)
T ss_pred cCCeEEECCCCCcCCHHHHHH----HHhCC---EEEEEECCH-HHHHHHhcCCCCCCC----C-------CCCChHHHHH
Confidence 3344443 32 233333333 22233 578888766 589999987755430 0 0112234444
Q ss_pred HHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHH-HHhc
Q 039424 158 RLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIE-FILH 200 (203)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~-~i~~ 200 (203)
+.++.+. .++.. .+++||+++ .++++++++|.+ ++.+
T Consensus 131 ~~~~~r~---~~y~~--ad~~Idt~~-~~~~~i~~~I~~~~~~~ 168 (171)
T PRK13947 131 ELLKERE---PFYDF--ADYTIDTGD-MTIDEVAEEIIKAYLKL 168 (171)
T ss_pred HHHHHHH---HHHHh--cCEEEECCC-CCHHHHHHHHHHHHHhh
Confidence 3333322 22222 458999998 799999999999 5543
No 43
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.73 E-value=1.8e-16 Score=114.74 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=92.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHH-HHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVI-WKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~l~ 79 (203)
|.|++||||||+++.|++.++++++++|..++...+... ...+ ...+...+... .+.+.. +.
T Consensus 9 liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i---------------~~~~-~~~g~~~fr~~e~~~l~~-l~ 71 (172)
T PRK05057 9 LVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADI---------------GWVF-DVEGEEGFRDREEKVINE-LT 71 (172)
T ss_pred EECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCH---------------hHHH-HHhCHHHHHHHHHHHHHH-HH
Confidence 579999999999999999999999999987665432110 0000 00111111111 122222 22
Q ss_pred CCCcEEEeCC---CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCC-CCHHH
Q 039424 80 LGVSVVVDSP---LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKP-STWRD 155 (203)
Q Consensus 80 ~~~~vIid~~---~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~-~~~e~ 155 (203)
....+|+.+. ...+..+..+. ..+ .+|+|+.++ +++.+|+..+...| ...+ ...+.
T Consensus 72 ~~~~~vi~~ggg~v~~~~~~~~l~----~~~---~vv~L~~~~-e~~~~Ri~~~~~rP------------~~~~~~~~~~ 131 (172)
T PRK05057 72 EKQGIVLATGGGSVKSRETRNRLS----ARG---VVVYLETTI-EKQLARTQRDKKRP------------LLQVDDPREV 131 (172)
T ss_pred hCCCEEEEcCCchhCCHHHHHHHH----hCC---EEEEEeCCH-HHHHHHHhCCCCCC------------CCCCCCHHHH
Confidence 2334555442 23334444433 234 689999766 58999998665443 1111 22344
Q ss_pred HHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 156 LERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+....+.+.++ |... ++++||+++ .++++++..|.+.++.
T Consensus 132 ~~~l~~~R~~~--Y~~~--Ad~~idt~~-~s~~ei~~~i~~~l~~ 171 (172)
T PRK05057 132 LEALANERNPL--YEEI--ADVTIRTDD-QSAKVVANQIIHMLES 171 (172)
T ss_pred HHHHHHHHHHH--HHhh--CCEEEECCC-CCHHHHHHHHHHHHhh
Confidence 54444444322 3232 459999999 8999999999998763
No 44
>PRK13949 shikimate kinase; Provisional
Probab=99.73 E-value=1.4e-16 Score=114.91 Aligned_cols=155 Identities=16% Similarity=0.117 Sum_probs=89.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHH-HHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVI-WKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~l~ 79 (203)
|+|+|||||||+++.|++.++++++++|.+.+...+..- ...+. ..++..+..+ .+.+.+ +.
T Consensus 6 liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~---------------~~~~~-~~g~~~fr~~e~~~l~~-l~ 68 (169)
T PRK13949 6 LVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTV---------------GDIFA-ERGEAVFRELERNMLHE-VA 68 (169)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccH---------------HHHHH-HhCHHHHHHHHHHHHHH-HH
Confidence 579999999999999999999999999998765332100 11111 1111222222 223333 33
Q ss_pred CCCcEEE-eCCC--CchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcC-CCCCCCccCCCCCCCCCCCCCHH-
Q 039424 80 LGVSVVV-DSPL--SRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRG-NEGGCGVVGDDRPSSWHKPSTWR- 154 (203)
Q Consensus 80 ~~~~vIi-d~~~--~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~-~~~~~~~~~~~~~~~~~~~~~~e- 154 (203)
....+|+ +|.. ......+.+ +..+ .+|+|+++++ .+.+|+..+. ..| ...+...+
T Consensus 69 ~~~~~vis~Ggg~~~~~~~~~~l----~~~~---~vi~L~~~~~-~~~~Ri~~~~~~RP------------~~~~~~~~~ 128 (169)
T PRK13949 69 EFEDVVISTGGGAPCFFDNMELM----NASG---TTVYLKVSPE-VLFVRLRLAKQQRP------------LLKGKSDEE 128 (169)
T ss_pred hCCCEEEEcCCcccCCHHHHHHH----HhCC---eEEEEECCHH-HHHHHHhcCCCCCC------------CCCCCChHH
Confidence 3334444 5532 223333332 2234 6789998764 8999998643 332 11111222
Q ss_pred ---HHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 155 ---DLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 155 ---~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
.+...++.+. .+|.. .+++||+++ .++++++++|++.+
T Consensus 129 ~~~~i~~l~~~R~---~~Y~~--ad~~id~~~-~~~~e~~~~I~~~~ 169 (169)
T PRK13949 129 LLDFIIEALEKRA---PFYRQ--AKIIFNADK-LEDESQIEQLVQRL 169 (169)
T ss_pred HHHHHHHHHHHHH---HHHHh--CCEEEECCC-CCHHHHHHHHHHhC
Confidence 3334444443 23333 349999999 89999999998753
No 45
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.73 E-value=1.8e-16 Score=114.96 Aligned_cols=162 Identities=20% Similarity=0.167 Sum_probs=92.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|++.+|+++++.|.+.+...+.. . ...+...-.....+...+.+...+..
T Consensus 9 l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~--------~-------~~~~~~~g~~~~~~~~~~~~~~l~~~ 73 (175)
T PRK00131 9 LIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKS--------I-------PEIFEEEGEAAFRELEEEVLAELLAR 73 (175)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCC--------H-------HHHHHHHCHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999876544211 0 01111100001112222333333333
Q ss_pred CCcEEEeCC--CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHH
Q 039424 81 GVSVVVDSP--LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLER 158 (203)
Q Consensus 81 ~~~vIid~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 158 (203)
...||..++ ......+.. .... ..+|++.+++ +.+.+|+..|...+ . ...+...+.+..
T Consensus 74 ~~~vi~~g~~~~~~~~~r~~----l~~~---~~~v~l~~~~-~~~~~R~~~~~~r~----~-------~~~~~~~~~~~~ 134 (175)
T PRK00131 74 HNLVISTGGGAVLREENRAL----LRER---GTVVYLDASF-EELLRRLRRDRNRP----L-------LQTNDPKEKLRD 134 (175)
T ss_pred CCCEEEeCCCEeecHHHHHH----HHhC---CEEEEEECCH-HHHHHHhcCCCCCC----c-------CCCCChHHHHHH
Confidence 333444442 222233333 2222 2678888766 47999998876432 0 001123344444
Q ss_pred HhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 159 LLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
....+... +... .+++|||++ .+++++++.|.+.++.+
T Consensus 135 ~~~~~~~~--~~~~--~dl~idt~~-~~~~e~~~~I~~~v~~~ 172 (175)
T PRK00131 135 LYEERDPL--YEEV--ADITVETDG-RSPEEVVNEILEKLEAA 172 (175)
T ss_pred HHHHHHHH--HHhh--cCeEEeCCC-CCHHHHHHHHHHHHHhh
Confidence 44433211 1111 458999998 89999999999998754
No 46
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.72 E-value=6.3e-17 Score=119.24 Aligned_cols=167 Identities=20% Similarity=0.206 Sum_probs=104.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhh--------hhhc--cCCCc-c--cc-----chHHHHHhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQ--------TLQK--TTPHH-Q--HA-----TSAAAAASSLL 62 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~--------~~~~--~~~~~-~--~~-----~~~~~~~~~~~ 62 (203)
|+|+|||||||+++.|++.+|++++|+|.+.+.+..... .+.. ..+.+ . .. .+.......++
T Consensus 6 itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~~~~l 85 (195)
T PRK14730 6 LTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEERRWL 85 (195)
T ss_pred EECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHHHHHH
Confidence 689999999999999998889999999999777542110 0100 01111 0 00 00012223444
Q ss_pred hhhhHHHHHHHHHHHhhC---CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCcc
Q 039424 63 NDLSYDVIWKIASTQLKL---GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVV 139 (203)
Q Consensus 63 ~~~~~~~l~~~~~~~l~~---~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~ 139 (203)
....++.+.+.+...+.. ...+|+|.+...+..+.. .+ + .++++.|+. +++.+|+..|.+.
T Consensus 86 ~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~~~~~---~~-----D-~ii~V~a~~-e~r~~Rl~~R~g~------ 149 (195)
T PRK14730 86 ENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEAKLTD---LC-----S-EIWVVDCSP-EQQLQRLIKRDGL------ 149 (195)
T ss_pred HHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCcchHh---CC-----C-EEEEEECCH-HHHHHHHHHcCCC------
Confidence 455555555555444332 356889997665433222 22 1 467777655 6899999999643
Q ss_pred CCCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 140 GDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 140 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
+.+.+.+++..+.+... ....++++|+|++ +.+++..++.+.+.
T Consensus 150 ------------s~e~~~~ri~~Q~~~~~--k~~~aD~vI~N~g--~~e~l~~qv~~~l~ 193 (195)
T PRK14730 150 ------------TEEEAEARINAQWPLEE--KVKLADVVLDNSG--DLEKLYQQVDQLLK 193 (195)
T ss_pred ------------CHHHHHHHHHhCCCHHH--HHhhCCEEEECCC--CHHHHHHHHHHHHh
Confidence 56778888876543322 2233668999999 99999999987653
No 47
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.71 E-value=3.7e-16 Score=131.30 Aligned_cols=163 Identities=12% Similarity=0.136 Sum_probs=103.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHH-HHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWK-IASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~ 79 (203)
|+|+|||||||+++.||+.+|++++|+|..+++..+..- .+++ ...++..++.+.. .+.+.+.
T Consensus 11 LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si---------------~eif-~~~Ge~~FR~~E~~~l~~~~~ 74 (542)
T PRK14021 11 IIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSI---------------PSYF-EEYGEPAFREVEADVVADMLE 74 (542)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCH---------------HHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999776543110 1111 1112233333333 3333333
Q ss_pred CCCcEEEeCC--CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH
Q 039424 80 LGVSVVVDSP--LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE 157 (203)
Q Consensus 80 ~~~~vIid~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~ 157 (203)
....||.-|. ...++.+..+.++.+..+ .+|||.++++ ++.+|+..+...| ....+..+.+.
T Consensus 75 ~~~~VIs~GGG~v~~~~n~~~L~~~~~~~g---~vv~L~~~~~-~l~~Rl~~~~~RP------------ll~~~~~~~~~ 138 (542)
T PRK14021 75 DFDGIFSLGGGAPMTPSTQHALASYIAHGG---RVVYLDADPK-EAMERANRGGGRP------------MLNGDANKRWK 138 (542)
T ss_pred cCCeEEECCCchhCCHHHHHHHHHHHhcCC---EEEEEECCHH-HHHHHHhCCCCCC------------CCCCCcHHHHH
Confidence 3334554442 445566666555555545 6899998765 8999997654443 11122345666
Q ss_pred HHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 158 RLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.++.+.+ .|... ++++||+++ .++++++.+|.+.+..
T Consensus 139 ~l~~~R~~--~Y~~~--Ad~~i~~~~-~~~~~~~~~i~~~~~~ 176 (542)
T PRK14021 139 KLFKQRDP--VFRQV--ANVHVHTRG-LTPQAAAKKLIDMVAE 176 (542)
T ss_pred HHHHHHHH--HHHhh--CCEEEECCC-CCHHHHHHHHHHHHHh
Confidence 66665542 23333 558999998 8999999999998764
No 48
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.70 E-value=1.2e-16 Score=117.76 Aligned_cols=172 Identities=22% Similarity=0.196 Sum_probs=107.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhh---hhh--ccCCC---cc--ccch-----HHHHHhhhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQ---TLQ--KTTPH---HQ--HATS-----AAAAASSLLNDL 65 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~---~~~--~~~~~---~~--~~~~-----~~~~~~~~~~~~ 65 (203)
|+|++||||||+++.|++.+|++++++|.+.+.++.... .+. .+... +. .... .......++...
T Consensus 11 lTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~~~~~Le~i 90 (204)
T PRK14733 11 ITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKEAKKWLEDY 90 (204)
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHHHHHHHHhh
Confidence 589999999999999998899999999999777642111 010 00000 00 0000 011223344555
Q ss_pred hHHHHHHHHHHHhhC--CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCC
Q 039424 66 SYDVIWKIASTQLKL--GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDR 143 (203)
Q Consensus 66 ~~~~l~~~~~~~l~~--~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~ 143 (203)
.++.+.+.+...+.. ...+|+|.+...+..... ... ++ .++++.|| .++..+|+..|.+.
T Consensus 91 ~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~~-~~~-----~D-~vi~V~a~-~e~ri~Rl~~Rd~~---------- 152 (204)
T PRK14733 91 LHPVINKEIKKQVKESDTVMTIVDIPLLGPYNFRH-YDY-----LK-KVIVIKAD-LETRIRRLMERDGK---------- 152 (204)
T ss_pred hhHHHHHHHHHHHHhcCCCeEEEEechhhhccCch-hhh-----CC-EEEEEECC-HHHHHHHHHHcCCC----------
Confidence 566666555554443 245889987654332110 011 11 35666665 56999999999654
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 144 PSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 144 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+++.++++.+.+..+.... ++++|||++ .+.+++..++.+.+++.
T Consensus 153 --------s~~~a~~ri~~Q~~~eek~~~--aD~VI~N~g-~~~~~l~~~~~~~~~~~ 199 (204)
T PRK14733 153 --------NRQQAVAFINLQISDKEREKI--ADFVIDNTE-LTDQELESKLITTINEI 199 (204)
T ss_pred --------CHHHHHHHHHhCCCHHHHHHh--CCEEEECcC-CCHHHHHHHHHHHHHHH
Confidence 678888888877654443333 669999998 78999999988877654
No 49
>PRK03839 putative kinase; Provisional
Probab=99.70 E-value=1.7e-16 Score=115.82 Aligned_cols=150 Identities=21% Similarity=0.296 Sum_probs=87.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|+++++++++++|++.+.. ++. ... .. . ....++.+...+.... .
T Consensus 5 l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~-~~~------~~~-------~~----~-~~~~~~~l~~~~~~~~-~ 64 (180)
T PRK03839 5 ITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKK-GIG------EEK-------DD----E-MEIDFDKLAYFIEEEF-K 64 (180)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhc-CCc------ccC-------Ch----h-hhcCHHHHHHHHHHhc-c
Confidence 5799999999999999999999999999986531 100 000 00 0 0122233333333322 3
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHh
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLL 160 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 160 (203)
+.++|+|+.+.. +. ... .+|+|.++++ ++.+|+..|+..+ +...+.+...+
T Consensus 65 ~~~vIidG~~~~---------l~---~~~-~vi~L~~~~~-~~~~Rl~~R~~~~---------------~~~~~~~~~~~ 115 (180)
T PRK03839 65 EKNVVLDGHLSH---------LL---PVD-YVIVLRAHPK-IIKERLKERGYSK---------------KKILENVEAEL 115 (180)
T ss_pred CCCEEEEecccc---------cc---CCC-EEEEEECCHH-HHHHHHHHcCCCH---------------HHHHHHHHHHH
Confidence 566999995321 11 222 4688887765 8999999885331 00111111111
Q ss_pred hhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 161 EGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
.... ..+.+......++||+++ .++++++++|.+.+...
T Consensus 116 ~~~~-~~~~~~~r~~~~~Id~~~-~s~eev~~~I~~~l~~~ 154 (180)
T PRK03839 116 VDVC-LCEALEEKEKVIEVDTTG-KTPEEVVEEILELIKSG 154 (180)
T ss_pred HHHH-HHHHHHhcCCEEEEECCC-CCHHHHHHHHHHHHhcC
Confidence 1100 001111223568999986 59999999999988653
No 50
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=99.70 E-value=5.4e-16 Score=110.78 Aligned_cols=154 Identities=21% Similarity=0.244 Sum_probs=88.6
Q ss_pred CCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHH-HHHHHHHhhCCCc
Q 039424 5 PGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVI-WKIASTQLKLGVS 83 (203)
Q Consensus 5 pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~l~~~~~ 83 (203)
|||||||+++.||+.+|++++|+|...+...+... ...+ ...++..++.. .+.+...+.....
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si---------------~~i~-~~~G~~~fr~~E~~~l~~l~~~~~~ 64 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSI---------------SEIF-AEEGEEAFRELESEALRELLKENNC 64 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHH---------------HHHH-HHHHHHHHHHHHHHHHHHHHCSSSE
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcH---------------HHHH-HcCChHHHHHHHHHHHHHHhccCcE
Confidence 79999999999999999999999999876553110 1111 11122233333 3334444444434
Q ss_pred EEEeC--CCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCH-HHHHHHh
Q 039424 84 VVVDS--PLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTW-RDLERLL 160 (203)
Q Consensus 84 vIid~--~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~-e~~~~~~ 160 (203)
||.-| .....+.++.+. ..+ .+|+|..++ +.+.+|+..+...| .+. .... +.+...+
T Consensus 65 VIa~GGG~~~~~~~~~~L~----~~g---~vI~L~~~~-~~l~~Rl~~~~~Rp----~l~--------~~~~~~~~~~~~ 124 (158)
T PF01202_consen 65 VIACGGGIVLKEENRELLK----ENG---LVIYLDADP-EELAERLRARDNRP----LLK--------GKMEHEEILELL 124 (158)
T ss_dssp EEEE-TTGGGSHHHHHHHH----HHS---EEEEEE--H-HHHHHHHHHHCTSG----GTC--------SHHHHHHHHHHH
T ss_pred EEeCCCCCcCcHHHHHHHH----hCC---EEEEEeCCH-HHHHHHHhCCCCCC----CCC--------CCChHHHHHHHH
Confidence 55444 234444444433 334 689998765 58999999887643 111 1111 1222222
Q ss_pred hhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 161 EGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
..+. ..|... +.+++|++. .++++++++|++.|+
T Consensus 125 ~~R~--~~Y~~~--a~~~v~~~~-~~~~~i~~~i~~~l~ 158 (158)
T PF01202_consen 125 FERE--PLYEQA--ADIVVDTDG-SPPEEIAEEILEFLK 158 (158)
T ss_dssp HHHH--HHHHHH--SSEEEETSS-CHHHHHHHHHHHHH-
T ss_pred HHHH--HHHHhc--CeEEEeCCC-CCHHHHHHHHHHHhC
Confidence 2222 112222 568999999 455999999999874
No 51
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.69 E-value=8.8e-16 Score=106.51 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=93.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|.|+|||||||+|+.||++||+++++++.+++.+.... + .+..+ ...+. .-+......+.+.......
T Consensus 5 IsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~-g----msl~e-----f~~~A-E~~p~iD~~iD~rq~e~a~- 72 (179)
T COG1102 5 ISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARER-G----MSLEE-----FSRYA-EEDPEIDKEIDRRQKELAK- 72 (179)
T ss_pred eccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHc-C----CCHHH-----HHHHH-hcCchhhHHHHHHHHHHHH-
Confidence 57999999999999999999999999999988765211 0 01000 00011 0011111222223333333
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHH----
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDL---- 156 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~---- 156 (203)
..++|+++... .| +++ ....+.|+|.+|. ++..+|+..|.+.. ..+...+.
T Consensus 73 ~~nvVlegrLA--~W------i~k--~~adlkI~L~Apl-~vRa~Ria~REgi~--------------~~~a~~~~~~RE 127 (179)
T COG1102 73 EGNVVLEGRLA--GW------IVR--EYADLKIWLKAPL-EVRAERIAKREGID--------------VDEALAETVERE 127 (179)
T ss_pred cCCeEEhhhhH--HH------Hhc--cccceEEEEeCcH-HHHHHHHHHhcCCC--------------HHHHHHHHHHHH
Confidence 66799998533 22 222 2333579999765 59999999997642 00111111
Q ss_pred ---HHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 157 ---ERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 157 ---~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
.+|...+-... ..-.-..+++|||+. .+++++..-|...+..+
T Consensus 128 ~se~kRY~~~YgID-idDlSiyDLVinTs~-~~~~~v~~il~~aid~~ 173 (179)
T COG1102 128 ESEKKRYKKIYGID-IDDLSIYDLVINTSK-WDPEEVFLILLDAIDAL 173 (179)
T ss_pred HHHHHHHHHHhCCC-CccceeeEEEEeccc-CCHHHHHHHHHHHHHhh
Confidence 11222211111 111223579999999 99999999888887654
No 52
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=99.69 E-value=1.6e-16 Score=111.60 Aligned_cols=149 Identities=23% Similarity=0.252 Sum_probs=92.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|.||+||||+|++|+ ++|+.+++..++.......... ++ ...... +..+.+...+...+ .
T Consensus 5 ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~----de----------~r~s~~--vD~d~~~~~le~~~-~ 66 (180)
T COG1936 5 ITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEY----DE----------LRKSVI--VDVDKLRKRLEELL-R 66 (180)
T ss_pred EeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeecc----CC----------ccceEE--eeHHHHHHHHHHHh-c
Confidence 68999999999999999 9999999999886652211100 01 001111 22333444444444 3
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHh
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLL 160 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 160 (203)
..+.|+|+.... +. +.+..+|.|.|.|. ++.+|++.|+..+ +.+...+
T Consensus 67 ~~~~Ivd~H~~h---------l~---~~~dlVvVLR~~p~-~L~~RLk~RGy~~-------------------eKI~ENv 114 (180)
T COG1936 67 EGSGIVDSHLSH---------LL---PDCDLVVVLRADPE-VLYERLKGRGYSE-------------------EKILENV 114 (180)
T ss_pred cCCeEeechhhh---------cC---CCCCEEEEEcCCHH-HHHHHHHHcCCCH-------------------HHHHHHH
Confidence 456899985332 11 21236788898775 8999999998764 2222222
Q ss_pred hhh-cC--CCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 161 EGY-CG--CTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 161 ~~~-~~--~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+. .. +.+......+.++||+++ .+++++++.|.+.+..
T Consensus 115 eAEi~~vi~~EA~E~~~~v~evdtt~-~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 115 EAEILDVILIEAVERFEAVIEVDTTN-RSPEEVAEEIIDIIGG 156 (180)
T ss_pred HHHHHHHHHHHHHHhcCceEEEECCC-CCHHHHHHHHHHHHcc
Confidence 110 00 001111124789999999 8999999999999873
No 53
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.69 E-value=8.5e-16 Score=118.16 Aligned_cols=159 Identities=15% Similarity=0.176 Sum_probs=98.1
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|.|||||||+|+.|++.+ + +.+++.+.+.-. . .. +. ...-.......+...+.
T Consensus 6 l~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~-----~-----~~-y~---------~~~~Ek~~R~~l~s~v~ 65 (270)
T PF08433_consen 6 LCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGID-----R-----ND-YA---------DSKKEKEARGSLKSAVE 65 (270)
T ss_dssp EE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-T-----T-----SS-S-----------GGGHHHHHHHHHHHHH
T ss_pred EEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccc-----h-----hh-hh---------chhhhHHHHHHHHHHHH
Confidence 58999999999999999875 2 445665555311 0 11 10 00011123344566677
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHH
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (203)
..+.....||+|+.+....+|.++.++++..+.++.+|++.|+. +.|.+|...|.... .-..+.
T Consensus 66 r~ls~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~-e~~~~~N~~R~~~~---------------~~~~e~ 129 (270)
T PF08433_consen 66 RALSKDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPL-ETCLQRNSKRPEPE---------------RYPEET 129 (270)
T ss_dssp HHHTT-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--H-HHHHHHHHHTT-S-----------------S-HHH
T ss_pred HhhccCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCH-HHHHHhhhccCCCC---------------CCCHHH
Confidence 77888888999999999999999999999999999999999876 58999999997652 135677
Q ss_pred HHHHhhhhcCCCCCCCCCCCeEEEecCC-CCChHHHHHHHH
Q 039424 156 LERLLEGYCGCTEYDVGDVPKLTVDTTA-SVGFQELVSNVI 195 (203)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~~~e~~~~i~ 195 (203)
+.+...+|+......+|..+.++|++.. ..+.+++++.|.
T Consensus 130 i~~m~~RfE~P~~~nrWD~plf~i~~~~~~~~~~~I~~~l~ 170 (270)
T PF08433_consen 130 IDDMIQRFEEPDPKNRWDSPLFTIDSSDEELPLEEIWNALF 170 (270)
T ss_dssp HHHHHHH---TTSS-GGGS-SEEEE-TTS---HHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCCccCCeEEEecCCCCCCHHHHHHHHH
Confidence 8888888887777777888899999533 245667776663
No 54
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.68 E-value=4.6e-16 Score=130.90 Aligned_cols=160 Identities=23% Similarity=0.212 Sum_probs=106.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCC------ceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKI------PLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIA 74 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~------~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (203)
|+|+|||||||+|+.|++.++. .+++.|.+++.+.+ ...+. ..-....+..+....
T Consensus 397 l~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~g--------e~~f~----------~~er~~~~~~l~~~a 458 (568)
T PRK05537 397 FTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSS--------ELGFS----------KEDRDLNILRIGFVA 458 (568)
T ss_pred EECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccC--------CCCCC----------HHHHHHHHHHHHHHH
Confidence 5899999999999999999985 89999988765431 11000 000111222233344
Q ss_pred HHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHH
Q 039424 75 STQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWR 154 (203)
Q Consensus 75 ~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e 154 (203)
...+..|.++|+|..+...+.++.++.+++..+ .+.+|+|.+++ +++.+|... + ++. ....+
T Consensus 459 ~~v~~~Gg~vI~~~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~-e~l~~R~rr-~-------Ll~--------~~~~~ 520 (568)
T PRK05537 459 SEITKNGGIAICAPIAPYRATRREVREMIEAYG-GFIEVHVATPL-EVCEQRDRK-G-------LYA--------KAREG 520 (568)
T ss_pred HHHHhCCCEEEEEeCCchHHHHHHHHHHHhhcC-CEEEEEEcCCH-HHHHHhccc-c-------ccc--------cchhc
Confidence 556778999999998888888888888887655 46689999766 488888621 1 111 11223
Q ss_pred HHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 155 DLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+...+..+ ..||.+..+.++|||+. .++++++++|++.+..
T Consensus 521 ~i~~l~~~R---~~yy~p~~Adl~IDt~~-~s~~eiv~~Il~~L~~ 562 (568)
T PRK05537 521 KIKGFTGIS---DPYEPPANPELVIDTTN-VTPDECAHKILLYLEE 562 (568)
T ss_pred hhhcccccc---ccccCCCCCcEEEECCC-CCHHHHHHHHHHHHHH
Confidence 344433332 33665444679999998 7999999999998864
No 55
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.68 E-value=5e-16 Score=117.48 Aligned_cols=170 Identities=16% Similarity=0.173 Sum_probs=102.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhh----hhhhc--cC----CCcc--ccchH-----HHHHhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQ----QTLQK--TT----PHHQ--HATSA-----AAAASSLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~----~~~~~--~~----~~~~--~~~~~-----~~~~~~~~~ 63 (203)
|||.+||||||+++.|++++|+++||+|.+.+.+.... +.+.. +. +.+. ..... .......++
T Consensus 6 lTGgIgSGKStVs~~L~~~~G~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d~~~~~~Le 85 (244)
T PTZ00451 6 LTGGIACGKSTVSRILREEHHIEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSDAQARRALG 85 (244)
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCCHHHHHHHH
Confidence 68999999999999999889999999999977754211 11100 00 0111 00000 011122333
Q ss_pred hhhHHHHHHHHHHHhh-------------CC-CcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHh
Q 039424 64 DLSYDVIWKIASTQLK-------------LG-VSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEG 129 (203)
Q Consensus 64 ~~~~~~l~~~~~~~l~-------------~~-~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~ 129 (203)
.+.++.+.+.+...+. .+ ..+|+|.+...+.... ... ++ .+|++.++. ++..+|+..
T Consensus 86 ~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~E~~~~--~~~-----~D-~iv~V~a~~-e~ri~RL~~ 156 (244)
T PTZ00451 86 RIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLFETKTF--TYF-----VS-ASVVVSCSE-ERQIERLRK 156 (244)
T ss_pred HHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhhccCch--hhc-----CC-eEEEEECCH-HHHHHHHHH
Confidence 3444444333322221 22 3699999866543211 011 12 466677654 689999999
Q ss_pred cCCCCCCCccCCCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecC--CCCChHHHHHHHHHHHhcc
Q 039424 130 RGNEGGCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTT--ASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 130 R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~~~e~~~~i~~~i~~~ 201 (203)
|++. +.+++.+|++.+.+..+ .....+++|+|+ + +++++..++.+.+..+
T Consensus 157 R~g~------------------s~eea~~Ri~~Q~~~~e--k~~~aD~VI~N~~~g--~~~~L~~~v~~~~~~~ 208 (244)
T PTZ00451 157 RNGF------------------SKEEALQRIGSQMPLEE--KRRLADYIIENDSAD--DLDELRGSVCDCVAWM 208 (244)
T ss_pred cCCC------------------CHHHHHHHHHhCCCHHH--HHHhCCEEEECCCCC--CHHHHHHHHHHHHHHH
Confidence 8643 66888888877544322 333366899999 9 9999999999877543
No 56
>PLN02422 dephospho-CoA kinase
Probab=99.68 E-value=6.1e-16 Score=115.95 Aligned_cols=168 Identities=18% Similarity=0.189 Sum_probs=105.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhh----hhhc--c----CCCccc--cch-----HHHHHhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQ----TLQK--T----TPHHQH--ATS-----AAAAASSLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~----~~~~--~----~~~~~~--~~~-----~~~~~~~~~~ 63 (203)
|+|.+||||||+++.|+ ++|++++|+|.+.+.++.... .+.. + .+.+.. ... .......++.
T Consensus 6 ltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~~~Le 84 (232)
T PLN02422 6 LTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKRQLLN 84 (232)
T ss_pred EECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHHHHHH
Confidence 58999999999999999 689999999999777652111 1100 0 011110 000 0111233444
Q ss_pred hhhHHHHHHHHHHHh-----hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCc
Q 039424 64 DLSYDVIWKIASTQL-----KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGV 138 (203)
Q Consensus 64 ~~~~~~l~~~~~~~l-----~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~ 138 (203)
.+.++.+.+.+...+ .....+|+|.+...+..+.. .+ + .++++.+++ ++..+|+..|++.
T Consensus 85 ~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~~~~~---~~-----D-~vI~V~a~~-e~ri~RL~~R~g~----- 149 (232)
T PLN02422 85 RLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFETKMDK---WT-----K-PVVVVWVDP-ETQLERLMARDGL----- 149 (232)
T ss_pred HHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhcchhh---hC-----C-EEEEEECCH-HHHHHHHHHcCCC-----
Confidence 455555544443221 22347999998665433222 11 2 467777655 5899999999653
Q ss_pred cCCCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 139 VGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 139 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+.+.+|++.+.+.... ....+++|+|++ +.+++..++...++.+
T Consensus 150 -------------s~eea~~Ri~~Q~~~eek--~~~AD~VI~N~g--s~e~L~~qv~~ll~~l 195 (232)
T PLN02422 150 -------------SEEQARNRINAQMPLDWK--RSKADIVIDNSG--SLEDLKQQFQKVLEKI 195 (232)
T ss_pred -------------CHHHHHHHHHHcCChhHH--HhhCCEEEECCC--CHHHHHHHHHHHHHHH
Confidence 568888888776544332 233668999999 9999999988877653
No 57
>PLN02199 shikimate kinase
Probab=99.68 E-value=1.8e-15 Score=116.09 Aligned_cols=160 Identities=13% Similarity=0.114 Sum_probs=94.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh-hhhhhhhccCCCccccchHHHHHhhhhhhhhHHHH-HHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL-SLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVI-WKIASTQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~l 78 (203)
|+|++||||||+++.|++.+|++++|+|.+++... +. .. ..+ ....++..+..+ .+.+.+..
T Consensus 107 LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~--------sI-------~eI-f~~~GE~~FR~~E~e~L~~L~ 170 (303)
T PLN02199 107 LVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGT--------SV-------AEI-FVHHGENFFRGKETDALKKLS 170 (303)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCC--------CH-------HHH-HHHhCHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999987642 20 00 111 112222233333 33333333
Q ss_pred hCCCcEEEeCC--CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhc--CCCCCCCccCCCCCCCCCCCC---
Q 039424 79 KLGVSVVVDSP--LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGR--GNEGGCGVVGDDRPSSWHKPS--- 151 (203)
Q Consensus 79 ~~~~~vIid~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R--~~~~~~~~~~~~~~~~~~~~~--- 151 (203)
.....||.-|. ...+..+..+ . .| .+|||+++++ .+.+|+... ...| +..+. .++
T Consensus 171 ~~~~~VIStGGG~V~~~~n~~~L----~-~G---~vV~Ldas~E-~l~~RL~~~~~~~RP----LL~~~-----~~d~~~ 232 (303)
T PLN02199 171 SRYQVVVSTGGGAVIRPINWKYM----H-KG---ISIWLDVPLE-ALAHRIAAVGTDSRP----LLHDE-----SGDAYS 232 (303)
T ss_pred hcCCEEEECCCcccCCHHHHHHH----h-CC---eEEEEECCHH-HHHHHHhhcCCCCCC----cCCCC-----Ccchhh
Confidence 33333444442 3444444432 2 24 6899998765 899999852 2222 11100 011
Q ss_pred -CHHHHHHHhhhhcCCCCCCCCCCCeEEEe------------cCCCCChHHHHHHHHHHHhc
Q 039424 152 -TWRDLERLLEGYCGCTEYDVGDVPKLTVD------------TTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 152 -~~e~~~~~~~~~~~~~~~~~~~~~~~~id------------~~~~~~~~e~~~~i~~~i~~ 200 (203)
..+.+.+.++.+. .+|.. +.++|+ +++ +++++++.+|+..+.+
T Consensus 233 ~~~~~L~~L~~~R~---plY~~--Ad~~V~~~~~~~~~~~~~td~-~s~~ei~~eIl~~l~~ 288 (303)
T PLN02199 233 VAFKRLSAIWDERG---EAYTN--ANARVSLENIAAKRGYKNVSD-LTPTEIAIEAFEQVLS 288 (303)
T ss_pred hHHHHHHHHHHHHH---HHHHh--CCEEEecccccccccccccCC-CCHHHHHHHHHHHHHH
Confidence 1245666665553 33333 457888 677 8999999999998864
No 58
>PRK13973 thymidylate kinase; Provisional
Probab=99.66 E-value=7.9e-15 Score=109.74 Aligned_cols=175 Identities=15% Similarity=0.065 Sum_probs=102.9
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCceech--------hhHhhh-hhhhhhhhhccCCCccccchHHHHHhhhhhhhhHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIPLIDK--------DDVRDC-TLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYD 68 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~~i~~--------d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (203)
|.|++||||||+++.|++.| |+.++.+ +...+. +.... .... . .....-.+......
T Consensus 8 iEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~-----~~~~-~-----~~~~~ll~~a~r~~ 76 (213)
T PRK13973 8 FEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGA-----AELY-G-----PRMEALLFAAARDD 76 (213)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCC-----ccCC-C-----HHHHHHHHHHHHHH
Confidence 57999999999999999999 7777755 333222 11100 0000 0 01101111112233
Q ss_pred HHHHHHHHHhhCCCcEEEeCCC------------CchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCC
Q 039424 69 VIWKIASTQLKLGVSVVVDSPL------------SRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGC 136 (203)
Q Consensus 69 ~l~~~~~~~l~~~~~vIid~~~------------~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~ 136 (203)
.+...+...+..|..||+|... ....+...+.........|..+|+|++++ +++.+|+..|......
T Consensus 77 ~~~~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~-e~~~~Rl~~R~~~~~~ 155 (213)
T PRK13973 77 HVEEVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPA-EVGLERAAKRRGSDTP 155 (213)
T ss_pred HHHHHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCH-HHHHHHHHhccCCCcc
Confidence 4455677788889999999832 11123344333322223577889999876 5899999998643100
Q ss_pred CccCCCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 137 GVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 137 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
..+ .....+.+.++.+.|..+.+.+. ...++||+++ +++++..+|...+..
T Consensus 156 -~~~--------e~~~~~~~~~~~~~y~~l~~~~~--~~~~~Ida~~--~~e~V~~~I~~~i~~ 206 (213)
T PRK13973 156 -DRF--------EKEDLAFHEKRREAFLQIAAQEP--ERCVVIDATA--SPEAVAAEIWAAVDQ 206 (213)
T ss_pred -Cch--------hhchHHHHHHHHHHHHHHHHhCC--CcEEEEcCCC--CHHHHHHHHHHHHHH
Confidence 000 11234555666666665443222 2467899999 999999999988764
No 59
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.66 E-value=4.4e-16 Score=114.03 Aligned_cols=157 Identities=20% Similarity=0.257 Sum_probs=97.9
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|+|||||||+++.|+..+ | +.+++.|.+++.+... .+. . ..... ..+..+.....
T Consensus 23 i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~-------~~~-~-----~~~~~-----~~~~~~~~~~~ 84 (184)
T TIGR00455 23 LTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKD-------LGF-S-----EEDRK-----ENIRRIGEVAK 84 (184)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccc-------cCC-C-----HHHHH-----HHHHHHHHHHH
Confidence 58999999999999999886 3 5678888887643310 000 0 00001 12233344555
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHH
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (203)
..+.+|.+||+|+++....+++.++.++.. .++.+|++.++.+ ++.+|.. ++ .+.... ......
T Consensus 85 ~~~~~G~~VI~d~~~~~~~~r~~~~~~~~~--~~~~~v~l~~~~e-~~~~R~~-~~-------l~~~~~-----~~~~~~ 148 (184)
T TIGR00455 85 LFVRNGIIVITSFISPYRADRQMVRELIEK--GEFIEVFVDCPLE-VCEQRDP-KG-------LYKKAR-----NGEIKG 148 (184)
T ss_pred HHHcCCCEEEEecCCCCHHHHHHHHHhCcC--CCeEEEEEeCCHH-HHHHhCc-hh-------HHHHHh-----cCCccC
Confidence 567889999999988888888887776653 3678899998765 7888722 10 000000 000011
Q ss_pred HHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 156 LERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
+..+ ...|+.+..+.++||++. .++++++.+|++.+
T Consensus 149 l~~~------~~~y~~p~~adl~Idt~~-~~~~~~~~~i~~~l 184 (184)
T TIGR00455 149 FTGI------DSPYEAPENPEVVLDTDQ-NDREECVGQIIEKL 184 (184)
T ss_pred cccc------cCCCCCCCCCcEEEECCC-CCHHHHHHHHHHhC
Confidence 1111 123554455779999998 79999999998764
No 60
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.66 E-value=9.9e-16 Score=112.33 Aligned_cols=168 Identities=20% Similarity=0.208 Sum_probs=94.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh--hhhhhhhccCCCccccchHHHHHhhhh-hhhhHHHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL--SLQQTLQKTTPHHQHATSAAAAASSLL-NDLSYDVIWKIASTQ 77 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 77 (203)
|+||+||||||+++.|+..++..++..+....... .....+......+............|. ....|.... .+...
T Consensus 7 l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~-~~~~~ 85 (186)
T PRK10078 7 LMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGI-EIDLW 85 (186)
T ss_pred EECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcH-HHHHH
Confidence 57999999999999999888777666665433211 000000000000000000000000000 001111122 35666
Q ss_pred hhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH
Q 039424 78 LKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE 157 (203)
Q Consensus 78 l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~ 157 (203)
++.|..||++|.. ..... +.+..+.+..+|++.++. +++.+|+..|.+. ..+.+.
T Consensus 86 l~~g~~VI~~G~~---~~~~~---~~~~~~~~~~vi~l~~s~-e~l~~RL~~R~~~------------------~~~~i~ 140 (186)
T PRK10078 86 LHAGFDVLVNGSR---AHLPQ---ARARYQSALLPVCLQVSP-EILRQRLENRGRE------------------NASEIN 140 (186)
T ss_pred HhCCCEEEEeChH---HHHHH---HHHHcCCCEEEEEEeCCH-HHHHHHHHHhCCC------------------CHHHHH
Confidence 7888889998752 22222 333345566778888655 6899999988543 446677
Q ss_pred HHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 158 RLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
.+++.+. ++.. ...++||++. ++++++++|...+...
T Consensus 141 ~rl~r~~----~~~~-ad~~vi~~~~--s~ee~~~~i~~~l~~~ 177 (186)
T PRK10078 141 ARLARAA----RYQP-QDCHTLNNDG--SLRQSVDTLLTLLHLS 177 (186)
T ss_pred HHHHHhh----hhcc-CCEEEEeCCC--CHHHHHHHHHHHHhhc
Confidence 7775432 2222 2447888777 9999999999988754
No 61
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.66 E-value=3.5e-15 Score=108.01 Aligned_cols=162 Identities=15% Similarity=0.150 Sum_probs=87.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+++.|++.+|+++++.|.+.+...+... .... ...+...+......+...+..
T Consensus 7 ~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~---------------~~~~-~~~g~~~~~~~e~~~~~~~~~ 70 (171)
T PRK03731 7 LVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTV---------------AEIV-EREGWAGFRARESAALEAVTA 70 (171)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCH---------------HHHH-HHHCHHHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999776442110 0000 000011111111111233333
Q ss_pred CCcEEEeCC--CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHH
Q 039424 81 GVSVVVDSP--LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLER 158 (203)
Q Consensus 81 ~~~vIid~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 158 (203)
+..+|..|. ......+.. ....+ .+|+|.+++ +++.+|+..|.... .+|. ....+..+.+.+
T Consensus 71 ~~~vi~~ggg~vl~~~~~~~----l~~~~---~~v~l~~~~-~~~~~Rl~~r~~~~------~rp~--~~~~~~~~~~~~ 134 (171)
T PRK03731 71 PSTVIATGGGIILTEENRHF----MRNNG---IVIYLCAPV-SVLANRLEANPEED------QRPT--LTGKPISEEVAE 134 (171)
T ss_pred CCeEEECCCCccCCHHHHHH----HHhCC---EEEEEECCH-HHHHHHHccccccc------cCCc--CCCCChHHHHHH
Confidence 333444332 223333333 33233 578888766 58999998874321 0000 000111233333
Q ss_pred HhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 159 LLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.++.+.+ .|... ..++||++. ++++++.+|.+.+..
T Consensus 135 ~~~~r~~--~y~~~--a~~~Id~~~--~~e~v~~~i~~~l~~ 170 (171)
T PRK03731 135 VLAEREA--LYREV--AHHIIDATQ--PPSQVVSEILSALAQ 170 (171)
T ss_pred HHHHHHH--HHHHh--CCEEEcCCC--CHHHHHHHHHHHHhc
Confidence 3332211 11111 348999998 999999999998864
No 62
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.66 E-value=2.4e-15 Score=105.92 Aligned_cols=160 Identities=21% Similarity=0.253 Sum_probs=101.4
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|||.|||||||+|.+|.++| | ..++|.|.+++.+.. ..+.. ..-.. .....+.+.++
T Consensus 28 ~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~---------dLgFs----~edR~-----eniRRvaevAk 89 (197)
T COG0529 28 FTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNR---------DLGFS----REDRI-----ENIRRVAEVAK 89 (197)
T ss_pred eecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccC---------CCCCC----hHHHH-----HHHHHHHHHHH
Confidence 68999999999999999887 4 457999999876541 11110 00000 11123344455
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHH
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (203)
.....|..+|+...-...+.++..+++... -+|+-||+.||.+ +|.+|=-.-- | ...
T Consensus 90 ll~daG~iviva~ISP~r~~R~~aR~~~~~--~~FiEVyV~~pl~-vce~RDpKGL--------Y------------kKA 146 (197)
T COG0529 90 LLADAGLIVIVAFISPYREDRQMARELLGE--GEFIEVYVDTPLE-VCERRDPKGL--------Y------------KKA 146 (197)
T ss_pred HHHHCCeEEEEEeeCccHHHHHHHHHHhCc--CceEEEEeCCCHH-HHHhcCchHH--------H------------HHH
Confidence 555677766666644455677776666532 2689999998764 8887722100 0 000
Q ss_pred HHHHhhhhcCCC-CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhccC
Q 039424 156 LERLLEGYCGCT-EYDVGDVPKLTVDTTASVGFQELVSNVIEFILHID 202 (203)
Q Consensus 156 ~~~~~~~~~~~~-~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~~ 202 (203)
..-.++.|.... .|+.+..+.+++||.. .++++.+++|++++...+
T Consensus 147 r~GeI~~fTGid~pYE~P~~Pel~l~t~~-~~vee~v~~i~~~l~~~~ 193 (197)
T COG0529 147 RAGEIKNFTGIDSPYEAPENPELHLDTDR-NSVEECVEQILDLLKERK 193 (197)
T ss_pred HcCCCCCCcCCCCCCCCCCCCeeEecccc-CCHHHHHHHHHHHHHhcc
Confidence 011233344443 4777788999999987 699999999999987543
No 63
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.66 E-value=4.7e-15 Score=116.90 Aligned_cols=94 Identities=9% Similarity=0.019 Sum_probs=74.5
Q ss_pred HHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCC
Q 039424 71 WKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKP 150 (203)
Q Consensus 71 ~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 150 (203)
...+...+..+..+|+|+.+....++..+..+++..+.++.+|+|.+++ +++.+|+..|...
T Consensus 117 ~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ld~pl-e~~l~RN~~R~~~----------------- 178 (340)
T TIGR03575 117 HSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPV-ESCLLRNKQRPVP----------------- 178 (340)
T ss_pred HHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEEeCCH-HHHHHHHhcCCCC-----------------
Confidence 3444455566777999999999999999999999999999999999876 5899999999643
Q ss_pred CCHHHHHHHhhhhcCCCC-CCCCCCCeEEEecC
Q 039424 151 STWRDLERLLEGYCGCTE-YDVGDVPKLTVDTT 182 (203)
Q Consensus 151 ~~~e~~~~~~~~~~~~~~-~~~~~~~~~~id~~ 182 (203)
-..+.+......++.... .+.|..+.++|+++
T Consensus 179 v~devie~m~~r~E~P~~~~nrWd~pl~~v~~~ 211 (340)
T TIGR03575 179 LPDETIQLMGRKIEKPNPEKNAWEHNSLVIQSS 211 (340)
T ss_pred CCHHHHHHHHHHhcCCCCCCCCCCCCeEEEecC
Confidence 245566666666666553 78899999999985
No 64
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.65 E-value=1.1e-15 Score=108.51 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=83.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhh-
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLK- 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~- 79 (203)
|.|+|||||||+|+.|+++||+.+|+.+++.+..... .++.+.... .....+.+ +..+.+.+.+...+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~------~s~~g~~i~--~~l~~g~~--vp~~~v~~ll~~~l~~ 70 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKS------DSELGKQIQ--EYLDNGEL--VPDELVIELLKERLEQ 70 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHT------TSHHHHHHH--HHHHTTSS----HHHHHHHHHHHHHS
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhh------hhHHHHHHH--HHHHhhcc--chHHHHHHHHHHHHhh
Confidence 5799999999999999999999999999996653311 111111000 01111111 334445555555544
Q ss_pred --CCCcEEEeCCCCchHhHHHHHHHHHhhC-CeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHH
Q 039424 80 --LGVSVVVDSPLSRRAHLEKLVKLAGEMR-AGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDL 156 (203)
Q Consensus 80 --~~~~vIid~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~ 156 (203)
...+||+||.+....+.+.|..+....+ .+..+|+|.+++ +.+.+|+.. + +.+.+
T Consensus 71 ~~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~-~~~~~R~~~---d------------------~~~~i 128 (151)
T PF00406_consen 71 PPCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPD-ETLIERLSQ---D------------------NEEVI 128 (151)
T ss_dssp GGTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--H-HHHHHHHHT---G------------------SHHHH
T ss_pred hcccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccch-hhhhhhccc---C------------------CHHHH
Confidence 3578999997666666666655443333 444788888765 589999886 2 66888
Q ss_pred HHHhhhhc
Q 039424 157 ERLLEGYC 164 (203)
Q Consensus 157 ~~~~~~~~ 164 (203)
.+|++.|.
T Consensus 129 ~~Rl~~y~ 136 (151)
T PF00406_consen 129 KKRLEEYR 136 (151)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998875
No 65
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.65 E-value=8.6e-15 Score=106.19 Aligned_cols=160 Identities=12% Similarity=0.151 Sum_probs=99.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|++||||||+++.|+..++..+++.|.+.... .... +..+.+... .....+. ..+...+...+..
T Consensus 8 l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~-~~r~-~~~g~~~~~------~~~~~~~-----~~~~~~~~~~~~~ 74 (176)
T PRK09825 8 LMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAK-NIDK-MSQGIPLTD------EDRLPWL-----ERLNDASYSLYKK 74 (176)
T ss_pred EECCCCCCHHHHHHHHHHhcCCEEECCcccCCHh-HHHH-HhcCCCCCc------ccchHHH-----HHHHHHHHHHHhc
Confidence 5799999999999999999999999999874321 0000 001111111 0000111 1111111111222
Q ss_pred -CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHH
Q 039424 81 -GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERL 159 (203)
Q Consensus 81 -~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 159 (203)
..++|+ +++....+++. +...+.++.+|+|.+++ +++.+|+.+|.++. .+.+.+...
T Consensus 75 ~~~g~iv-~s~~~~~~R~~----~r~~~~~~~~v~l~a~~-~~l~~Rl~~R~~~~----------------~~~~vl~~Q 132 (176)
T PRK09825 75 NETGFIV-CSSLKKQYRDI----LRKSSPNVHFLWLDGDY-ETILARMQRRAGHF----------------MPPDLLQSQ 132 (176)
T ss_pred CCCEEEE-EEecCHHHHHH----HHhhCCCEEEEEEeCCH-HHHHHHHhcccCCC----------------CCHHHHHHH
Confidence 345666 66666556555 45557889999999876 58999999997542 467777777
Q ss_pred hhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 160 LEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
++.+++... .+...+.||++. +++++..++.+.+..
T Consensus 133 ~~~~e~~~~---~e~~~~~~d~~~--~~~~~~~~~~~~~~~ 168 (176)
T PRK09825 133 FDALERPCA---DEHDIARIDVNH--DIENVTEQCRQAVQA 168 (176)
T ss_pred HHHcCCCCC---CcCCeEEEECCC--CHHHHHHHHHHHHHH
Confidence 766553322 222579999999 888888888887753
No 66
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.65 E-value=7.1e-15 Score=115.74 Aligned_cols=160 Identities=19% Similarity=0.218 Sum_probs=95.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHH-HHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVI-WKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~l~ 79 (203)
|+|+|||||||+++.|++.+|++++++|..++...+... .... ...++..+..+ .+.+...+.
T Consensus 138 l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i---------------~ei~-~~~G~~~fr~~e~~~l~~ll~ 201 (309)
T PRK08154 138 LIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSV---------------SEIF-ALYGQEGYRRLERRALERLIA 201 (309)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCH---------------HHHH-HHHCHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999988765443110 0110 01111122222 223334344
Q ss_pred CC-CcEEEeCCC--CchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHH
Q 039424 80 LG-VSVVVDSPL--SRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDL 156 (203)
Q Consensus 80 ~~-~~vIid~~~--~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~ 156 (203)
.. ..||..|.. .....+.. +.. .+.+|||.+++ +++.+|+..|...+ |. ...++..+.+
T Consensus 202 ~~~~~VI~~Ggg~v~~~~~~~~---l~~----~~~~V~L~a~~-e~~~~Rl~~r~~~r--------p~--~~~~~~~e~i 263 (309)
T PRK08154 202 EHEEMVLATGGGIVSEPATFDL---LLS----HCYTVWLKASP-EEHMARVRAQGDLR--------PM--ADNREAMEDL 263 (309)
T ss_pred hCCCEEEECCCchhCCHHHHHH---HHh----CCEEEEEECCH-HHHHHHHhcCCCCC--------CC--CCCCChHHHH
Confidence 33 334444432 12222222 221 23689998766 58999999875432 00 0012345667
Q ss_pred HHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 157 ERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
....+.+.+ +|.. .+++||+++ .++++++++|...+..
T Consensus 264 ~~~~~~R~~---~y~~--ad~~I~t~~-~s~ee~~~~I~~~l~~ 301 (309)
T PRK08154 264 RRILASREP---LYAR--ADAVVDTSG-LTVAQSLARLRELVRP 301 (309)
T ss_pred HHHHHHHHH---HHHh--CCEEEECCC-CCHHHHHHHHHHHHHH
Confidence 666665543 3333 558999999 8999999999998864
No 67
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.65 E-value=6.3e-15 Score=122.28 Aligned_cols=98 Identities=15% Similarity=0.145 Sum_probs=84.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
++|+|||||||+|+.++...|+.+++.|.+.. ++.+...+...|..
T Consensus 374 l~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~----------------------------------~~~~~~~a~~~L~~ 419 (526)
T TIGR01663 374 AVGFPGAGKSHFCKKFFQPAGYKHVNADTLGS----------------------------------TQNCLTACERALDQ 419 (526)
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEECcHHHHH----------------------------------HHHHHHHHHHHHhC
Confidence 57999999999999999999999999998721 12234557788899
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCC
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE 133 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~ 133 (203)
|.+||+|.++...+.+..|.++++..|+++..+++.++. +++++|+..|...
T Consensus 420 G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~-e~~~~Rn~~R~~~ 471 (526)
T TIGR01663 420 GKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPL-AQAKHNIAFRELS 471 (526)
T ss_pred CCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCH-HHHHHHHHhhccC
Confidence 999999999999999999999999999999999999765 6899999999653
No 68
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.65 E-value=3e-15 Score=106.38 Aligned_cols=146 Identities=21% Similarity=0.230 Sum_probs=79.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHH-HHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIW-KIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~ 79 (203)
|+|+|||||||+|+.|++.+|+++++.|.+.+...+... ...... .....+.... +.+.....
T Consensus 4 l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~~---------------~~~~~~-~~~~~~~~~e~~~~~~~~~ 67 (154)
T cd00464 4 LIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSI---------------PEIFAE-EGEEGFRELEREVLLLLLT 67 (154)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCCH---------------HHHHHH-HCHHHHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999766442100 011111 1111122221 23333333
Q ss_pred CCCcEEEeCC--C-CchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHH
Q 039424 80 LGVSVVVDSP--L-SRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDL 156 (203)
Q Consensus 80 ~~~~vIid~~--~-~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~ 156 (203)
.+ .+|+++. . ..... ++.... ...+|++.+++ +++.+|+..|...+ .......+.+
T Consensus 68 ~~-~~vi~~g~~~i~~~~~----~~~~~~---~~~~i~l~~~~-e~~~~R~~~r~~r~------------~~~~~~~~~~ 126 (154)
T cd00464 68 KE-NAVIATGGGAVLREEN----RRLLLE---NGIVVWLDASP-EELLERLARDKTRP------------LLQDEDPERL 126 (154)
T ss_pred cC-CcEEECCCCccCcHHH----HHHHHc---CCeEEEEeCCH-HHHHHHhccCCCCC------------CCCCCCHHHH
Confidence 33 4555542 1 22221 222222 23688888765 58999999886443 0111222344
Q ss_pred HHHhhhhcCCCCCCCCCCCeEEEecCCCCChH
Q 039424 157 ERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQ 188 (203)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~ 188 (203)
..++..+.+ .|... .+++||+++ ++++
T Consensus 127 ~~~~~~r~~--~Y~~~--ad~~i~~~~-~~~~ 153 (154)
T cd00464 127 RELLEEREP--LYREV--ADLTIDTDE-LSPE 153 (154)
T ss_pred HHHHHHHHH--HHHHh--CcEEEECCC-CCCC
Confidence 444444321 12222 568999998 6764
No 69
>PRK04182 cytidylate kinase; Provisional
Probab=99.65 E-value=1.1e-15 Score=111.42 Aligned_cols=163 Identities=14% Similarity=0.074 Sum_probs=89.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|++.+|++++++|++.+...... + .+... ........ ......+...+......
T Consensus 5 i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~-g----~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (180)
T PRK04182 5 ISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKER-G----MSLEE-----FNKYAEED-PEIDKEIDRRQLEIAEK 73 (180)
T ss_pred EECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHc-C----CCHHH-----HHHHhhcC-chHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999988766543110 0 00000 00000000 00111222222222224
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHh
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLL 160 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 160 (203)
+.++|+++.... + +.. +.+..+|++.+++ +.+.+|+..|...+ .......+.++.
T Consensus 74 ~~~~Vi~g~~~~--~------~~~--~~~~~~V~l~a~~-e~~~~Rl~~r~~~~--------------~~~a~~~~~~~d 128 (180)
T PRK04182 74 EDNVVLEGRLAG--W------MAK--DYADLKIWLKAPL-EVRAERIAEREGIS--------------VEEALEETIERE 128 (180)
T ss_pred CCCEEEEEeecc--e------Eec--CCCCEEEEEECCH-HHHHHHHHhccCCC--------------HHHHHHHHHHHH
Confidence 557889985332 1 011 1134678888765 58999999886432 001111111111
Q ss_pred h----hhcCCCC--CCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 161 E----GYCGCTE--YDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 161 ~----~~~~~~~--~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
. .|..+.. .......+++|||+. .+++++++.|.+.+..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~d~~idt~~-~~~~~~~~~I~~~~~~ 173 (180)
T PRK04182 129 ESEAKRYKEYYGIDIDDLSIYDLVINTSR-WDPEGVFDIILTAIDK 173 (180)
T ss_pred HHHHHHHHHHhCCCccccccccEEEECCC-CCHHHHHHHHHHHHHH
Confidence 1 1111000 001123669999999 8999999999998864
No 70
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.64 E-value=4.1e-15 Score=109.27 Aligned_cols=163 Identities=21% Similarity=0.236 Sum_probs=96.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhh--------hhhc--cCCCcc--ccchH-----HHHHhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQ--------TLQK--TTPHHQ--HATSA-----AAAASSLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~--------~~~~--~~~~~~--~~~~~-----~~~~~~~~~ 63 (203)
|+|.|||||||+++.|++..+++++++|.+.+.++.... .+.. ..+.+. ..... .......+.
T Consensus 4 itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~~~le 83 (188)
T TIGR00152 4 LTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEELKWLN 83 (188)
T ss_pred EECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHHHHHH
Confidence 689999999999999998777999999999776542110 1100 001111 00000 011112222
Q ss_pred hhhHHHHHHHHHHHh----hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCcc
Q 039424 64 DLSYDVIWKIASTQL----KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVV 139 (203)
Q Consensus 64 ~~~~~~l~~~~~~~l----~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~ 139 (203)
...++.+.+.+...+ ..+..+|++.+...... +...+ . .++++.++ .+++.+|+..|.+.
T Consensus 84 ~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~---~~~~~---D---~vv~V~~~-~~~~~~Rl~~R~~~------ 147 (188)
T TIGR00152 84 NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENK---LRSLC---D---RVIVVDVS-PQLQLERLMQRDNL------ 147 (188)
T ss_pred HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCC---cHHhC---C---EEEEEECC-HHHHHHHHHHcCCC------
Confidence 333333333333322 23457888887554321 12222 1 46777765 46999999999743
Q ss_pred CCCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHH
Q 039424 140 GDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVI 195 (203)
Q Consensus 140 ~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~ 195 (203)
+.+.+.++++.+.+.. ......+++|+|++ +++++..++.
T Consensus 148 ------------s~~~~~~r~~~q~~~~--~~~~~ad~vI~N~~--~~e~l~~~~~ 187 (188)
T TIGR00152 148 ------------TEEEVQKRLASQMDIE--ERLARADDVIDNSA--TLADLVKQLE 187 (188)
T ss_pred ------------CHHHHHHHHHhcCCHH--HHHHhCCEEEECCC--CHHHHHHHHh
Confidence 5678888888764332 22233669999999 9999988774
No 71
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.64 E-value=3.3e-15 Score=110.64 Aligned_cols=160 Identities=20% Similarity=0.247 Sum_probs=96.5
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|++||||||+++.|+..+ +..+++.|.+++.+.... .+ .+. .. ...+..+...+.
T Consensus 29 i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~-~~---~~~-------~~-------~~~~~~l~~~a~ 90 (198)
T PRK03846 29 FTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDL-GF---SDA-------DR-------KENIRRVGEVAK 90 (198)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcC-Cc---Ccc-------cH-------HHHHHHHHHHHH
Confidence 58999999999999999876 357788888875433100 00 000 00 112223334455
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHH
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (203)
..+.+|..||.+......++++.++.++... ++.+|+|.++++ ++.+|.. |+ ++.. ...+.
T Consensus 91 ~~~~~G~~VI~~~~~~~~~~R~~~r~~l~~~--~~i~V~L~~~~e-~~~~R~~-r~-------l~~~--------~~~~~ 151 (198)
T PRK03846 91 LMVDAGLVVLTAFISPHRAERQMVRERLGEG--EFIEVFVDTPLA-ICEARDP-KG-------LYKK--------ARAGE 151 (198)
T ss_pred HHhhCCCEEEEEeCCCCHHHHHHHHHHcccC--CEEEEEEcCCHH-HHHhcCc-hh-------HHHH--------hhcCC
Confidence 5566787777766665667888888777543 456799998765 7888821 11 0000 00011
Q ss_pred HHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 156 LERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+....... ..|..+..+.++||+.. .++++++++|++.+...
T Consensus 152 ~~~l~~~r---~~Y~~p~~ad~~Idt~~-~~~~~vv~~Il~~l~~~ 193 (198)
T PRK03846 152 IRNFTGID---SVYEAPESPEIHLDTGE-QLVTNLVEQLLDYLRQR 193 (198)
T ss_pred ccCccccc---ccCCCCCCCCEEEECCC-CCHHHHHHHHHHHHHHc
Confidence 11111111 12443444669999987 79999999999988643
No 72
>PRK06217 hypothetical protein; Validated
Probab=99.63 E-value=3.8e-15 Score=108.97 Aligned_cols=162 Identities=17% Similarity=0.169 Sum_probs=92.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|++.+|++++++|.+++.-.. .+.+. ..........+...+..
T Consensus 6 i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~--------~~~~~--------------~~~~~~~~~~~~~~~~~ 63 (183)
T PRK06217 6 ITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTD--------PPFTT--------------KRPPEERLRLLLEDLRP 63 (183)
T ss_pred EECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCC--------CCccc--------------cCCHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999753110 00000 00111112233334445
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCc-cCCCCCCCCCCCCCHHHHHHH
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGV-VGDDRPSSWHKPSTWRDLERL 159 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~ 159 (203)
+..+|+||.+.. +.+. +... ...+|+|+++. +++..|+..|.... .|. ... .. -.......+.++
T Consensus 64 ~~~~vi~G~~~~--~~~~---~~~~---~d~~i~Ld~~~-~~~~~Rl~~R~~~~-~~~~~~~--~~--~~e~~~~~~~~~ 129 (183)
T PRK06217 64 REGWVLSGSALG--WGDP---LEPL---FDLVVFLTIPP-ELRLERLRLREFQR-YGNRILP--GG--DMHKASLEFLEW 129 (183)
T ss_pred CCCEEEEccHHH--HHHH---HHhh---CCEEEEEECCH-HHHHHHHHcCcccc-cCcccCC--CC--CHHHHHHHHHHH
Confidence 677999986542 2222 2221 22578888765 58999999986431 000 000 00 000112345555
Q ss_pred hhhhcCC----CC---CC----CCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 160 LEGYCGC----TE---YD----VGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 160 ~~~~~~~----~~---~~----~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
...|... .. ++ ......+++++.. +++++.++|...|.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~--~~~~~~~~i~~~~~~ 179 (183)
T PRK06217 130 AASYDTAGPEGRSLAAHEQWLADQSCPVLRLDGDL--TVEDLLDEVLDHLAS 179 (183)
T ss_pred HHhccCCCCCcccHHHHHHHHHhCCCCeEEEcCCC--CHHHHHHHHHHHHhc
Confidence 4444421 11 10 1123556777777 999999999998864
No 73
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.63 E-value=4.3e-15 Score=109.47 Aligned_cols=168 Identities=17% Similarity=0.092 Sum_probs=103.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhh-h---hhhc--cC----CCcc--ccch-----HHHHHhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQ-Q---TLQK--TT----PHHQ--HATS-----AAAAASSLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~-~---~~~~--~~----~~~~--~~~~-----~~~~~~~~~~ 63 (203)
|+|++||||||+++.|+ .+|+.+++.|.+.+.+.... . .+.. +. +.+. .... .......++.
T Consensus 4 itG~~gsGKst~~~~l~-~~g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~~~L~ 82 (196)
T PRK14732 4 ITGMIGGGKSTALKILE-ELGAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKLKALN 82 (196)
T ss_pred EECCCCccHHHHHHHHH-HCCCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHHHHHH
Confidence 58999999999999997 57999999999977654211 1 0100 00 0111 0000 0111223444
Q ss_pred hhhHHHHHHHHHHHh---hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccC
Q 039424 64 DLSYDVIWKIASTQL---KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVG 140 (203)
Q Consensus 64 ~~~~~~l~~~~~~~l---~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~ 140 (203)
...++.+.+.+...+ ..+..+|+|.+...+..... .+ + .++++.+++ ++..+|+..|.+.
T Consensus 83 ~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~~~~---~~-----D-~vi~V~a~~-e~r~~RL~~R~g~------- 145 (196)
T PRK14732 83 ELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFETDAYT---LC-----D-ATVTVDSDP-EESILRTISRDGM------- 145 (196)
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcCchh---hC-----C-EEEEEECCH-HHHHHHHHHcCCC-------
Confidence 455555544443333 23456888988665543222 22 1 467777655 5899999999643
Q ss_pred CCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 141 DDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 141 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+.+..|++.+.+..+. ...++++|+|++ +.+++..++...++.+
T Consensus 146 -----------s~e~a~~ri~~Q~~~~~k--~~~aD~vI~N~~--~~~~l~~~v~~l~~~~ 191 (196)
T PRK14732 146 -----------KKEDVLARIASQLPITEK--LKRADYIVRNDG--NREGLKEECKILYSTL 191 (196)
T ss_pred -----------CHHHHHHHHHHcCCHHHH--HHhCCEEEECCC--CHHHHHHHHHHHHHHH
Confidence 567888888775433222 233668999999 9999999998877543
No 74
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.63 E-value=4.5e-15 Score=107.84 Aligned_cols=158 Identities=20% Similarity=0.203 Sum_probs=91.7
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|+|||||||+|+.|+..+ | +.+++.|.+++.+.. . .+.. ......++ ..+.....
T Consensus 9 ~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~---~----~~~~------~~~r~~~~-----~~~~~~a~ 70 (175)
T PRK00889 9 FTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSK---G----LGFS------KEDRDTNI-----RRIGFVAN 70 (175)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhc---C----CCCC------hhhHHHHH-----HHHHHHHH
Confidence 57999999999999999887 2 667899988654321 0 0000 00001111 11222233
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHH
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (203)
.....|..+|+|+.......++.++... .++.+|+|+++++ .+.+|. .|+ . +.+ ...+.
T Consensus 71 ~~~~~g~~vi~~~~~~~~~~~~~l~~~~----~~~~~v~l~~~~e-~~~~R~-~~~-l------~~~--------~~~~~ 129 (175)
T PRK00889 71 LLTRHGVIVLVSAISPYRETREEVRANI----GNFLEVFVDAPLE-VCEQRD-VKG-L------YAK--------ARAGE 129 (175)
T ss_pred HHHhCCCEEEEecCCCCHHHHHHHHhhc----CCeEEEEEcCCHH-HHHHhC-ccc-H------HHH--------HHcCC
Confidence 3345687888998765556666655443 3568899998765 788884 111 0 000 00011
Q ss_pred HHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 156 LERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+..++... ..+|.+..+.+.|++++ .++++++++|++.+...
T Consensus 130 i~~~~~~~---~~~~~p~~ad~~i~~~~-~~~~~~~~~i~~~l~~~ 171 (175)
T PRK00889 130 IKHFTGID---DPYEPPLNPEVECRTDL-ESLEESVDKVLQKLEEL 171 (175)
T ss_pred CCCCcccC---CCCCCCCCCcEEEECCC-CCHHHHHHHHHHHHHHc
Confidence 11111111 23444333568888887 69999999999998753
No 75
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.62 E-value=2.2e-15 Score=110.80 Aligned_cols=166 Identities=21% Similarity=0.189 Sum_probs=100.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhh-h----hhh-hhccCCCc-cccchH----------HHHHhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLS-L----QQT-LQKTTPHH-QHATSA----------AAAASSLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~-~----~~~-~~~~~~~~-~~~~~~----------~~~~~~~~~ 63 (203)
|||.|||||||+|+.+++ +|++++++|.+.+.+.. . ... -.++.+.. ...... ......++.
T Consensus 7 lTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~~~~~Le 85 (201)
T COG0237 7 LTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPEARLKLE 85 (201)
T ss_pred EecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHHHHHHHH
Confidence 689999999999999997 99999999999775431 1 111 11111110 000000 111223333
Q ss_pred hhhHHHHHHHHH---HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccC
Q 039424 64 DLSYDVIWKIAS---TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVG 140 (203)
Q Consensus 64 ~~~~~~l~~~~~---~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~ 140 (203)
.+.++.+...+. +....+ .+++|-+...+.+... .+ ..+|.+.|++ ++..+|+.+|++
T Consensus 86 ~i~hPli~~~~~~~~~~~~~~-~~~~eiplL~e~~~~~--------~~-d~Vi~V~a~~-e~r~eRl~~R~~-------- 146 (201)
T COG0237 86 KILHPLIRAEIKVVIDGARSP-YVVLEIPLLFEAGGEK--------YF-DKVIVVYAPP-EIRLERLMKRDG-------- 146 (201)
T ss_pred HhhhHHHHHHHHHHHHHhhCC-ceEEEchHHHhccccc--------cC-CEEEEEECCH-HHHHHHHHhcCC--------
Confidence 444444433322 222222 5777876544322111 11 1466666655 699999999983
Q ss_pred CCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 141 DDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 141 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+.+....++..+.+..+ +...+++++||++ ++++..+++...+..
T Consensus 147 ----------~~~e~~~~~~~~Q~~~~e--k~~~ad~vi~n~~--~i~~l~~~i~~~~~~ 192 (201)
T COG0237 147 ----------LDEEDAEARLASQRDLEE--KLALADVVIDNDG--SIENLLEQIEKLLKE 192 (201)
T ss_pred ----------CCHHHHHHHHHhcCCHHH--HHhhcCChhhcCC--CHHHHHHHHHHHHHH
Confidence 367778888876654433 3455779999999 999999998887764
No 76
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.62 E-value=1.4e-15 Score=112.49 Aligned_cols=168 Identities=22% Similarity=0.235 Sum_probs=100.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhh-----hhh---hhcc--CCCcccc--c-----hHHHHHhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSL-----QQT---LQKT--TPHHQHA--T-----SAAAAASSLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~-----~~~---~~~~--~~~~~~~--~-----~~~~~~~~~~~ 63 (203)
|+|++||||||+++.|+. +|++++++|.+.+.+... +.. +... .+.+... . +.......++.
T Consensus 6 itG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~~~~le 84 (200)
T PRK14734 6 LTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQTALLN 84 (200)
T ss_pred EECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHHHHHHH
Confidence 589999999999999995 899999999986664421 111 1000 0111100 0 00011122233
Q ss_pred hhhHHHHHHHHHHH----hhCC-CcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCc
Q 039424 64 DLSYDVIWKIASTQ----LKLG-VSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGV 138 (203)
Q Consensus 64 ~~~~~~l~~~~~~~----l~~~-~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~ 138 (203)
...++.+.+.+... ...+ ..++++.+......... .+ ..+|++.++. ++..+|+..|++.
T Consensus 85 ~i~hP~v~~~~~~~~~~~~~~~~~~vv~e~plL~e~g~~~---~~------D~vi~V~a~~-e~ri~Rl~~R~g~----- 149 (200)
T PRK14734 85 AITHPRIAEETARRFNEARAQGAKVAVYDMPLLVEKGLDR---KM------DLVVVVDVDV-EERVRRLVEKRGL----- 149 (200)
T ss_pred HhhCHHHHHHHHHHHHHHHhcCCCEEEEEeeceeEcCccc---cC------CeEEEEECCH-HHHHHHHHHcCCC-----
Confidence 33334443333322 2233 45888887654432211 11 1467777755 5899999998543
Q ss_pred cCCCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 139 VGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 139 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+.+.++++.+.+..... ...+++|+|++ +++++..++...+..+
T Consensus 150 -------------s~e~~~~ri~~Q~~~~~k~--~~ad~vI~N~g--~~e~l~~~v~~~~~~~ 195 (200)
T PRK14734 150 -------------DEDDARRRIAAQIPDDVRL--KAADIVVDNNG--TREQLLAQVDGLIAEI 195 (200)
T ss_pred -------------CHHHHHHHHHhcCCHHHHH--HhCCEEEECcC--CHHHHHHHHHHHHHHH
Confidence 5688888888765443222 33568999999 9999999988877543
No 77
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.62 E-value=2.1e-15 Score=109.62 Aligned_cols=155 Identities=17% Similarity=0.102 Sum_probs=89.0
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|+|||||||+|+.|++.++ +.+++.|.+++.+.. ..+. ..... ...........
T Consensus 12 i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~---------~~~~------~~~~~----~~~~~~~~l~~ 72 (176)
T PRK05541 12 ITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGH---------YGYD------KQSRI----EMALKRAKLAK 72 (176)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCC---------CCCC------HHHHH----HHHHHHHHHHH
Confidence 589999999999999998885 678888888653210 0000 00000 00111111222
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHH
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (203)
.....|..||+|+.....+.++..+ ....++.+|+|.++++ ++.+|+..+.... ...+.
T Consensus 73 ~l~~~g~~VI~~~~~~~~~~~~~~~----~~~~~~~~v~l~~~~e-~~~~R~~~~l~~~----------------~~~~~ 131 (176)
T PRK05541 73 FLADQGMIVIVTTISMFDEIYAYNR----KHLPNYFEVYLKCDME-ELIRRDQKGLYTK----------------ALKGE 131 (176)
T ss_pred HHHhCCCEEEEEeCCcHHHHHHHHH----hhcCCeEEEEEeCCHH-HHHHhchhhHHHH----------------HHcCc
Confidence 2335688899998754433333322 2234557899998765 8999975321000 11223
Q ss_pred HHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 156 LERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
+..++..+.+ .++.. ++++|||++..++++++.+|.+.+.
T Consensus 132 ~~~~~~~~~~--~~~~~--Ad~vI~~~~~~~~~~~v~~i~~~l~ 171 (176)
T PRK05541 132 IKNVVGVDIP--FDEPK--ADLVIDNSCRTSLDEKVDLILNKLK 171 (176)
T ss_pred ccccccCCCc--ccCCC--CCEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4444443322 22222 5699999851399999999988875
No 78
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.61 E-value=5.1e-15 Score=110.29 Aligned_cols=167 Identities=14% Similarity=0.140 Sum_probs=99.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhh-----hhh---hhc--cCCC--c----cccc-----hHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSL-----QQT---LQK--TTPH--H----QHAT-----SAAAAAS 59 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~-----~~~---~~~--~~~~--~----~~~~-----~~~~~~~ 59 (203)
|+|++||||||+++.|+. +|++++++|.+.+.+... +.. +.. .... + .... +......
T Consensus 10 itG~igsGKSt~~~~l~~-~g~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~~~vf~~~~~~ 88 (208)
T PRK14731 10 VTGGIGSGKSTVCRFLAE-MGCELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIAQVVFSDPEKL 88 (208)
T ss_pred EECCCCCCHHHHHHHHHH-CCCeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHHHHHhCCHHHH
Confidence 689999999999999995 999999999887765410 110 100 0000 0 0000 0011112
Q ss_pred hhhhhhhHHHHHHHHHH----HhhCC-CcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCC
Q 039424 60 SLLNDLSYDVIWKIAST----QLKLG-VSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEG 134 (203)
Q Consensus 60 ~~~~~~~~~~l~~~~~~----~l~~~-~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~ 134 (203)
.++....++.+...+.. ....+ ..+|+|.+...+..... .++ .++++.++ .+++.+|+..|++.
T Consensus 89 ~~l~~i~hp~i~~~~~~~i~~~~~~~~~vvv~e~pLL~e~~~~~--------~~d-~ii~V~a~-~e~~~~Rl~~R~~~- 157 (208)
T PRK14731 89 GALNRLIHPKVFAAFQRAVDRAARRGKRILVKEAAILFESGGDA--------GLD-FIVVVAAD-TELRLERAVQRGMG- 157 (208)
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHhcCCCEEEEEeeeeeecCchh--------cCC-eEEEEECC-HHHHHHHHHHcCCC-
Confidence 33333333444333332 22334 45778887654432211 112 45666665 56899999999643
Q ss_pred CCCccCCCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 135 GCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+.+.+|++.+.+....- ...+++|+|++ +++++..++...+..
T Consensus 158 -----------------s~e~~~~Ri~~q~~~~~~~--~~ad~vI~N~g--~~e~l~~~i~~~~~~ 202 (208)
T PRK14731 158 -----------------SREEIRRRIAAQWPQEKLI--ERADYVIYNNG--TLDELKAQTEQLYQV 202 (208)
T ss_pred -----------------CHHHHHHHHHHcCChHHHH--HhCCEEEECCC--CHHHHHHHHHHHHHH
Confidence 6688888888765433322 23568999999 999999999988764
No 79
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.61 E-value=1.7e-14 Score=104.22 Aligned_cols=156 Identities=18% Similarity=0.123 Sum_probs=88.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|++||||||+|+.|++++|+++++.|++.+.+.... + .+. . . ...+... .......+...+......
T Consensus 5 i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~-g----~~~-~--~--~~~~~~~-~~~~~~~~~~~i~~~~~~ 73 (171)
T TIGR02173 5 ISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKM-G----LDL-I--E--FLNYAEE-NPEIDKKIDRRIHEIALK 73 (171)
T ss_pred EECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHc-C----CCH-H--H--HHHHHhc-CcHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999988766543210 0 000 0 0 0000000 001112233333333334
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHh
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLL 160 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 160 (203)
+.++|+|+.+.. + ... ..+...|++.+++ +++.+|+..|.+.+ .+...+++
T Consensus 74 ~~~~Vi~g~~~~--~------~~~--~~~d~~v~v~a~~-~~r~~R~~~R~~~s------------------~~~a~~~~ 124 (171)
T TIGR02173 74 EKNVVLESRLAG--W------IVR--EYADVKIWLKAPL-EVRARRIAKREGKS------------------LTVARSET 124 (171)
T ss_pred CCCEEEEecccc--e------eec--CCcCEEEEEECCH-HHHHHHHHHccCCC------------------HHHHHHHH
Confidence 567999996432 1 011 1122578888765 58999999986542 22222221
Q ss_pred hh--------hcCCCC--CCCCCCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 161 EG--------YCGCTE--YDVGDVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 161 ~~--------~~~~~~--~~~~~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
.. |..... +......+++|||+. +++++ ++.|.+.+
T Consensus 125 ~~~d~~~~~~~~~~~~~~~~~~~~ydl~i~t~~-~~~~~-~~~i~~~~ 170 (171)
T TIGR02173 125 IEREESEKRRYLKFYGIDIDDLSIYDLVINTSN-WDPNN-VDIILDAL 170 (171)
T ss_pred HHHHHHHHHHHHHHhCCCccccccccEEEECCC-CCHHH-HHHHHHHh
Confidence 11 111111 111133569999999 99999 99998765
No 80
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=99.61 E-value=5.3e-15 Score=109.62 Aligned_cols=183 Identities=18% Similarity=0.208 Sum_probs=117.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
+.|+|||||+|+|.+|++.|+..+++++++.+... +.+++.+..... .+..+.+ +....+...+...+..
T Consensus 20 ~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~i------a~~telg~~~~~--~~~~g~l--vpDeiv~~~l~~~l~~ 89 (235)
T KOG3078|consen 20 LLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEI------ASGTELGKEAKE--AIDKGKL--VPDEVVVRLLEKRLEN 89 (235)
T ss_pred EEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHH------hccCcHHHHHHH--HHHhcCc--CcHHHHHHHHHhhccc
Confidence 46999999999999999999999999999966532 122333221111 1111122 2333344444444444
Q ss_pred ---CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCC----CCCCC-------
Q 039424 81 ---GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGD----DRPSS------- 146 (203)
Q Consensus 81 ---~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~----~~~~~------- 146 (203)
..++++|+........+.+... .-.+..+|.+.+++ +.+.+|+..|.-++.+|.+|| +|...
T Consensus 90 ~~~~~~~ildg~Prt~~qa~~l~~~---~~~~d~Vi~l~vp~-~~L~~ri~~r~ihp~sG~~Yh~~~~pPk~~~~dDitg 165 (235)
T KOG3078|consen 90 PRCQKGFILDGFPRTVQQAEELLDR---IAQIDLVINLKVPE-EVLVDRITGRRIHPASGRVYHLEFNPPKVPGKDDITG 165 (235)
T ss_pred cccccccccCCCCcchHHHHHHHHc---cCCcceEEEecCCH-HHHHHHHhcccccCcccceecccccCCcccccccccc
Confidence 3679999965554433332222 22344678888765 599999999999999999887 33221
Q ss_pred ----CCCCCCHHHHHHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 147 ----WHKPSTWRDLERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 147 ----~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
-+.++.++.+..|++.|.... +||+.......++.+ .+++++..+.+.+..
T Consensus 166 epL~qr~dD~~e~v~~rL~~y~~~~~pv~eyY~k~~~l~~~~~~---~~~~v~~~v~~~l~~ 224 (235)
T KOG3078|consen 166 EPLIQREDDKPEVVKKRLKAYKEQTKPVLEYYKKKGVLIEFSGE---KPEEVFPNVYAFLSK 224 (235)
T ss_pred ChhhcCccccHHHHHHHHHHHhhcchHHHHHHHhcCeeeeccCc---chhHhHHHHHHHHHh
Confidence 224688999999999987654 366655433333332 388999988887764
No 81
>PRK08356 hypothetical protein; Provisional
Probab=99.61 E-value=2.4e-14 Score=105.78 Aligned_cols=176 Identities=15% Similarity=0.144 Sum_probs=95.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhh--hhhh-hhccCCCcccc--chHHHHHhhhhhhh--hHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLS--LQQT-LQKTTPHHQHA--TSAAAAASSLLNDL--SYDVIWKI 73 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~--~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~l~~~ 73 (203)
|+|+|||||||+|+.|+ ++|+++|++++....... .... +. ....... ....-...+.+... ....+.+.
T Consensus 10 ~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~~~~~~~f~--~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~~~ 86 (195)
T PRK08356 10 VVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTHNVSDYSWV--PEVPFKGEPTRENLIELGRYLKEKYGEDILIRL 86 (195)
T ss_pred EECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccccccccccc--cHHHHhhccccccHHHHHHHHHHhcCcHHHHHH
Confidence 58999999999999996 589999999975332110 0000 00 0000000 00000001111000 01222333
Q ss_pred HHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCH
Q 039424 74 ASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTW 153 (203)
Q Consensus 74 ~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~ 153 (203)
+.+.+.....+++||. ......+.+... + ..+|++.+++ +++.+|+..|+... ++ ...+.
T Consensus 87 ~~~~~~~~~~ividG~-r~~~q~~~l~~~----~--~~vi~l~~~~-~~~~~Rl~~R~~~~-------~~-----~~~~~ 146 (195)
T PRK08356 87 AVDKKRNCKNIAIDGV-RSRGEVEAIKRM----G--GKVIYVEAKP-EIRFERLRRRGAEK-------DK-----GIKSF 146 (195)
T ss_pred HHHHhccCCeEEEcCc-CCHHHHHHHHhc----C--CEEEEEECCH-HHHHHHHHhcCCcc-------cc-----ccccH
Confidence 3334444446999987 443444443332 2 2578888765 68999999987542 00 01256
Q ss_pred HHHHHHhhhhcCCCC-CCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 154 RDLERLLEGYCGCTE-YDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 154 e~~~~~~~~~~~~~~-~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+.++......+.. .+.....+++|+|++ +++++.++|...+..+
T Consensus 147 e~~~~~~~~~~~l~~~~~~~~~aD~vI~N~~--~~e~~~~~i~~~~~~~ 193 (195)
T PRK08356 147 EDFLKFDEWEEKLYHTTKLKDKADFVIVNEG--TLEELRKKVEEILREL 193 (195)
T ss_pred HHHHHHHHHHHHhhhhhhHHHhCcEEEECCC--CHHHHHHHHHHHHHHh
Confidence 666666543322111 111123568888877 9999999999988764
No 82
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.60 E-value=1.1e-14 Score=102.55 Aligned_cols=105 Identities=24% Similarity=0.244 Sum_probs=70.5
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|.|||||||+|+.|.++| ...+++.|.+++.+.. ..+.. ... +......+.+.+.
T Consensus 7 ltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~---------dl~fs----~~d-----R~e~~rr~~~~A~ 68 (156)
T PF01583_consen 7 LTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNA---------DLGFS----KED-----REENIRRIAEVAK 68 (156)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTT---------T--SS----HHH-----HHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCC---------CCCCC----HHH-----HHHHHHHHHHHHH
Confidence 58999999999999999888 3568999999876431 00000 000 1122244555666
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHH
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRR 126 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R 126 (203)
....+|..||++.....++.++..++.... .++..||+.||. ++|.+|
T Consensus 69 ll~~~G~ivIva~isp~~~~R~~~R~~~~~--~~f~eVyv~~~~-e~~~~R 116 (156)
T PF01583_consen 69 LLADQGIIVIVAFISPYREDREWARELIPN--ERFIEVYVDCPL-EVCRKR 116 (156)
T ss_dssp HHHHTTSEEEEE----SHHHHHHHHHHHHT--TEEEEEEEES-H-HHHHHH
T ss_pred HHHhCCCeEEEeeccCchHHHHHHHHhCCc--CceEEEEeCCCH-HHHHHh
Confidence 667889999999977777888888777642 278999999966 588888
No 83
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.60 E-value=3.2e-14 Score=102.08 Aligned_cols=168 Identities=21% Similarity=0.200 Sum_probs=101.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh-hhhhh-----hhccCC----Ccccc--chHHHH-----Hhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL-SLQQT-----LQKTTP----HHQHA--TSAAAA-----ASSLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~-~~~~~-----~~~~~~----~~~~~--~~~~~~-----~~~~~~ 63 (203)
++|..||||||+++.+. .+|+++||+|.+.+.+. +..+. -.++++ .+... .....+ ....+.
T Consensus 6 LTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~~~~r~~Ln 84 (225)
T KOG3220|consen 6 LTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSDPKKRQALN 84 (225)
T ss_pred eecccccChHHHHHHHH-HcCCcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCCHHHHHHHH
Confidence 68999999999999997 89999999999976644 21111 111121 11100 000000 011111
Q ss_pred hh-----hHHHHHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCc
Q 039424 64 DL-----SYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGV 138 (203)
Q Consensus 64 ~~-----~~~~l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~ 138 (203)
.. ...++.+.....+.-...+|+|.|...+..+.. ++ + .+|.+.|+. +...+|+..|..-
T Consensus 85 ~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~~~~~---~~---~---~tvvV~cd~-~~Ql~Rl~~Rd~l----- 149 (225)
T KOG3220|consen 85 KITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEAKLLK---IC---H---KTVVVTCDE-ELQLERLVERDEL----- 149 (225)
T ss_pred hcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHHhHHh---he---e---eEEEEEECc-HHHHHHHHHhccc-----
Confidence 11 123333333333333445889988665442222 22 1 345555554 5899999999743
Q ss_pred cCCCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 139 VGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 139 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+..+.|+..+.+..+..+. +.++|||++ ++++..+++...+..+
T Consensus 150 -------------se~dAe~Rl~sQmp~~~k~~~--a~~Vi~Nng--~~~~l~~qv~~v~~~~ 195 (225)
T KOG3220|consen 150 -------------SEEDAENRLQSQMPLEKKCEL--ADVVIDNNG--SLEDLYEQVEKVLALL 195 (225)
T ss_pred -------------cHHHHHHHHHhcCCHHHHHHh--hheeecCCC--ChHHHHHHHHHHHHHh
Confidence 778888999888766554434 569999999 9999999988776543
No 84
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.59 E-value=1.5e-15 Score=110.17 Aligned_cols=156 Identities=21% Similarity=0.256 Sum_probs=91.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhh-hhh-------hhhcc--CCCcc--ccch-----HHHHHhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLS-LQQ-------TLQKT--TPHHQ--HATS-----AAAAASSLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~-~~~-------~~~~~--~~~~~--~~~~-----~~~~~~~~~~ 63 (203)
|||.+||||||+++.|++ +|++++|+|.+.+.++. ... .+... .+.+. .... ........+.
T Consensus 5 lTG~igsGKStv~~~l~~-~G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~~~~L~ 83 (180)
T PF01121_consen 5 LTGGIGSGKSTVSKILAE-LGFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEKLKKLE 83 (180)
T ss_dssp EEESTTSSHHHHHHHHHH-TT-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHHHHHHH
T ss_pred EECCCcCCHHHHHHHHHH-CCCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHHHHHHH
Confidence 589999999999999996 99999999999777552 111 11110 11111 0000 0112233445
Q ss_pred hhhHHHHHHHHHHHhhC---CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccC
Q 039424 64 DLSYDVIWKIASTQLKL---GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVG 140 (203)
Q Consensus 64 ~~~~~~l~~~~~~~l~~---~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~ 140 (203)
.+.++.+.+.+...+.. ...+|+|.+...+..+.. . ++ .++++.|+ .++..+|+..|.+.
T Consensus 84 ~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~~~~~---~-----~D-~vi~V~a~-~e~ri~Rl~~R~~~------- 146 (180)
T PF01121_consen 84 NIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFESGLEK---L-----CD-EVIVVYAP-EEIRIKRLMERDGL------- 146 (180)
T ss_dssp HHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTTTGGG---G-----SS-EEEEEE---HHHHHHHHHHHHTS-------
T ss_pred HHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhhhHhh---h-----hc-eEEEEECC-HHHHHHHHHhhCCC-------
Confidence 55666666655554432 256999998766543222 1 12 45666665 56899999999754
Q ss_pred CCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHH
Q 039424 141 DDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQE 189 (203)
Q Consensus 141 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e 189 (203)
+.+.+.++++.+.+..+.... .+++|+|++ +.++
T Consensus 147 -----------~~~~~~~ri~~Q~~~~~k~~~--ad~vI~N~g--~~~~ 180 (180)
T PF01121_consen 147 -----------SEEEAEARIASQMPDEEKRKR--ADFVIDNNG--SLEE 180 (180)
T ss_dssp -----------THHHHHHHHHTS--HHHHHHH---SEEEE-SS--HHH-
T ss_pred -----------cHHHHHHHHHhCCCHHHHHHh--CCEEEECCC--CCCC
Confidence 678888898877544433333 669999999 7654
No 85
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.59 E-value=5.7e-15 Score=107.62 Aligned_cols=152 Identities=22% Similarity=0.250 Sum_probs=90.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhh----hhhc--cCC----Ccc--ccchHH-----HHHhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQ----TLQK--TTP----HHQ--HATSAA-----AAASSLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~----~~~~--~~~----~~~--~~~~~~-----~~~~~~~~ 63 (203)
|+|+|||||||+++.|++ +|++++++|.+.+.+..... .+.. +.. .+. ...... .....++.
T Consensus 4 itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~~~l~ 82 (179)
T cd02022 4 LTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKRKKLE 82 (179)
T ss_pred EECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHHHHHH
Confidence 589999999999999997 99999999999777542110 1111 110 000 000001 11122344
Q ss_pred hhhHHHHHHHHHHHhhC---CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccC
Q 039424 64 DLSYDVIWKIASTQLKL---GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVG 140 (203)
Q Consensus 64 ~~~~~~l~~~~~~~l~~---~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~ 140 (203)
...++.+...+...+.. ...+|+|.+...+.... ..+ + .+|++.|++ ++..+|+..|.+.
T Consensus 83 ~i~hp~i~~~~~~~~~~~~~~~~vive~plL~e~~~~---~~~-----D-~vv~V~a~~-~~ri~Rl~~Rd~~------- 145 (179)
T cd02022 83 AITHPLIRKEIEEQLAEARKEKVVVLDIPLLFETGLE---KLV-----D-RVIVVDAPP-EIQIERLMKRDGL------- 145 (179)
T ss_pred HHHHHHHHHHHHHHHHHccCCCEEEEEehHhhcCCcH---HhC-----C-eEEEEECCH-HHHHHHHHHcCCC-------
Confidence 55566665555544432 24688898765443321 122 1 467777765 5899999998643
Q ss_pred CCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCC
Q 039424 141 DDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTA 183 (203)
Q Consensus 141 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 183 (203)
+.+.+.+++..+.+... .....+++|+|++
T Consensus 146 -----------s~~~~~~r~~~Q~~~~~--~~~~aD~vI~N~~ 175 (179)
T cd02022 146 -----------SEEEAEARIASQMPLEE--KRARADFVIDNSG 175 (179)
T ss_pred -----------CHHHHHHHHHhcCCHHH--HHHhCCEEEECcC
Confidence 56777788776543222 2233668999987
No 86
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.57 E-value=9.3e-14 Score=102.30 Aligned_cols=123 Identities=19% Similarity=0.201 Sum_probs=74.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH-hhhhhhhhhhhhccCCCcccc----------chHHHHHhhhh--hhhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV-RDCTLSLQQTLQKTTPHHQHA----------TSAAAAASSLL--NDLSY 67 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~-~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~--~~~~~ 67 (203)
|+|+|||||||+|+.|++.+|+.++..+++ ++.+.+... . .|.-... ........+.. .+..+
T Consensus 8 i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~---~-~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~v~ 83 (197)
T PRK12339 8 IGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVD---D-EPVLAKSVYDAWEFYGSMTDENIVKGYLDQARAIM 83 (197)
T ss_pred EECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcC---C-CCCcccccHHHHHHcCCcchhHHHHHHHHHHHHHH
Confidence 579999999999999999999876555554 554443211 0 0000000 00011111111 12345
Q ss_pred HHHHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCC
Q 039424 68 DVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE 133 (203)
Q Consensus 68 ~~l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~ 133 (203)
..+...+...+.+|.++|+|+.+..+.+++. ....+. .++++..++++.+.+|+..|...
T Consensus 84 ~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~----~~~~~v--~~i~l~v~d~e~lr~Rl~~R~~~ 143 (197)
T PRK12339 84 PGINRVIRRALLNGEDLVIESLYFHPPMIDE----NRTNNI--RAFYLYIRDAELHRSRLADRINY 143 (197)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCcCHHHHHH----HHhcCe--EEEEEEeCCHHHHHHHHHHHhhc
Confidence 6677778888899999999998877766543 222233 33444445667899999999865
No 87
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.56 E-value=4.1e-14 Score=121.43 Aligned_cols=159 Identities=23% Similarity=0.257 Sum_probs=103.0
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
++|+|||||||+|+.|++.+ ++.+++.|.++..+.. ..+.. ..... ..+..+...+.
T Consensus 465 ~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~-------~~~~~------~~~r~-----~~~~~l~~~a~ 526 (632)
T PRK05506 465 FTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNR-------DLGFS------DADRV-----ENIRRVAEVAR 526 (632)
T ss_pred ecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCC-------CCCCC------HHHHH-----HHHHHHHHHHH
Confidence 58999999999999999986 3578999999865431 01100 11111 22334445555
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHH
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (203)
..+..|..||+|..+.....++.+++++.. .++.+|+|.++. +.+.+|. .| + ++. ....+.
T Consensus 527 ~~~~~G~~Vivda~~~~~~~R~~~r~l~~~--~~~~~v~L~~~~-e~~~~R~-~r---~----L~~--------~~~~~~ 587 (632)
T PRK05506 527 LMADAGLIVLVSFISPFREERELARALHGE--GEFVEVFVDTPL-EVCEARD-PK---G----LYA--------KARAGE 587 (632)
T ss_pred HHHhCCCEEEEECCCCCHHHHHHHHHhccc--CCeEEEEECCCH-HHHHhhC-Cc---c----hhh--------hccccc
Confidence 666889999999988777888877766543 367889999765 5888883 22 1 111 011122
Q ss_pred HHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 156 LERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+....... ..|+.+..+.++||++. .++++++++|++++..
T Consensus 588 l~~l~~~r---~~y~~P~~a~~~Id~~~-~s~~e~v~~Ii~~l~~ 628 (632)
T PRK05506 588 IKNFTGID---SPYEAPENPELRLDTTG-RSPEELAEQVLELLRR 628 (632)
T ss_pred cccccccc---cCCCCCCCCeEEEeCCC-CCHHHHHHHHHHHHHH
Confidence 22221111 23554444679999977 6999999999998864
No 88
>PRK04040 adenylate kinase; Provisional
Probab=99.55 E-value=6.6e-14 Score=102.54 Aligned_cols=164 Identities=20% Similarity=0.190 Sum_probs=89.2
Q ss_pred CCCCCCCChHHHHHHHHHhC--CCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHH-
Q 039424 1 MKGHPGTGKSTLADAIASAL--KIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQ- 77 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~--~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 77 (203)
|+|+|||||||+++.|++++ ++.+++.+++........ ++ .... .. ...+.......+...+...
T Consensus 7 v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~-g~----~~~~-----d~--~r~l~~~~~~~~~~~a~~~i 74 (188)
T PRK04040 7 VTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEE-GL----VEHR-----DE--MRKLPPEEQKELQREAAERI 74 (188)
T ss_pred EEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHc-CC----CCCH-----HH--HhhCChhhhHHHHHHHHHHH
Confidence 58999999999999999999 899999999865543211 00 0000 00 0011111111222222222
Q ss_pred --hhCCCcEEEeCCCCc-------hHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHh--cCCCCCCCccCCCCCCC
Q 039424 78 --LKLGVSVVVDSPLSR-------RAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEG--RGNEGGCGVVGDDRPSS 146 (203)
Q Consensus 78 --l~~~~~vIid~~~~~-------~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~--R~~~~~~~~~~~~~~~~ 146 (203)
+..+.++|+|+.+.. ...-.. ..+.. .|..+|++.++|++.+.||+.. |.+.
T Consensus 75 ~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~---~~~~l-~pd~ii~l~a~p~~i~~Rrl~d~~R~R~------------- 137 (188)
T PRK04040 75 AEMAGEGPVIVDTHATIKTPAGYLPGLPEW---VLEEL-NPDVIVLIEADPDEILMRRLRDETRRRD------------- 137 (188)
T ss_pred HHhhcCCCEEEeeeeeeccCCCCcCCCCHH---HHhhc-CCCEEEEEeCCHHHHHHHHhcccccCCC-------------
Confidence 234556999994321 011111 22222 3456788888888777888764 3332
Q ss_pred CCCCCCHHHHHHHhhhhcCCCC---CCCCCCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 147 WHKPSTWRDLERLLEGYCGCTE---YDVGDVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 147 ~~~~~~~e~~~~~~~~~~~~~~---~~~~~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
..+.+.+..+++....... ++... ...+|.|.. -.+++.+++|.+.|
T Consensus 138 ---~es~e~I~~~~~~a~~~a~~~a~~~g~-~~~iI~N~d-~~~e~a~~~i~~ii 187 (188)
T PRK04040 138 ---VETEEDIEEHQEMNRAAAMAYAVLTGA-TVKIVENRE-GLLEEAAEEIVEVL 187 (188)
T ss_pred ---CCCHHHHHHHHHHHHHHHHHHHHhcCC-eEEEEECCC-CCHHHHHHHHHHHh
Confidence 1356666666554332211 12222 334444443 15999999998876
No 89
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.55 E-value=5.4e-13 Score=98.56 Aligned_cols=177 Identities=19% Similarity=0.243 Sum_probs=92.3
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCceechhhHhhhhh--hhhhhhhccCCCccccchHHHHHhhhh-hhhhHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIPLIDKDDVRDCTL--SLQQTLQKTTPHHQHATSAAAAASSLL-NDLSYDVIWKIA 74 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~~i~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~ 74 (203)
|.|++||||||+++.|++.+ |+.++.......... .+...+....+... .......+ ....+..+.+.+
T Consensus 5 ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~r~~~~~~~~ 79 (200)
T cd01672 5 FEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKM-----DPRAELLLFAADRAQHVEEVI 79 (200)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCC-----CHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999988 555544322111000 00000000000000 00000000 001112223344
Q ss_pred HHHhhCCCcEEEeCCCC------------chHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCC
Q 039424 75 STQLKLGVSVVVDSPLS------------RRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDD 142 (203)
Q Consensus 75 ~~~l~~~~~vIid~~~~------------~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~ 142 (203)
...+..+..+|+|.... ...+...+..+......|..+|+|.+++ +++.+|+..|+...
T Consensus 80 ~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~-~~~~~R~~~R~~~~-------- 150 (200)
T cd01672 80 KPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDP-EVGLARIEARGRDD-------- 150 (200)
T ss_pred HHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCH-HHHHHHHHhcCCcc--------
Confidence 45567788899995211 1233444444444334567889999876 58999999987642
Q ss_pred CCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 143 RPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 143 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
. ......+.+.+....|..+...+ ....++||++. +++++.++|.+.|.
T Consensus 151 --~--~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~id~~~--~~e~i~~~i~~~i~ 199 (200)
T cd01672 151 --R--DEQEGLEFHERVREGYLELAAQE--PERIIVIDASQ--PLEEVLAEILKAIL 199 (200)
T ss_pred --h--hhhhhHHHHHHHHHHHHHHHHhC--CCeEEEEeCCC--CHHHHHHHHHHHHh
Confidence 0 00112222222223333222211 12568999999 99999999998875
No 90
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.55 E-value=4e-13 Score=99.89 Aligned_cols=177 Identities=18% Similarity=0.179 Sum_probs=90.5
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCceechhhHhhhhhh--hhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIPLIDKDDVRDCTLS--LQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~~i~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|.|++||||||+++.|++.+ |..++-.........+ +...+.. .... .. .....-.+....+..+...+.
T Consensus 8 ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~--~~~~-~~--~~~~~~~~~~~r~~~~~~~i~ 82 (205)
T PRK00698 8 IEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLD--PNEE-MD--DKTELLLFYAARAQHLEEVIK 82 (205)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHhc--cccC-CC--HHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999876 2222221111100000 0111110 0000 00 000000000112333344455
Q ss_pred HHhhCCCcEEEeCCCCc------------hHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCC
Q 039424 76 TQLKLGVSVVVDSPLSR------------RAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDR 143 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~------------~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~ 143 (203)
..+..|..+|+|..... ..+...+.........|..+|+|.+++ +++.+|+..|+... .
T Consensus 83 ~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~-~~~~~Rl~~R~~~~--------~ 153 (205)
T PRK00698 83 PALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPP-EVGLARIRARGELD--------R 153 (205)
T ss_pred HHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCH-HHHHHHHHhcCCcc--------h
Confidence 66678889999962111 123333332222223466889999876 58999999996421 0
Q ss_pred CCCCCCCCCHHHHHHHh-hhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 144 PSSWHKPSTWRDLERLL-EGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 144 ~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.......+..++ +.|..+.... ....++||+++ +++++.++|.+.+..
T Consensus 154 -----~~~~~~~~~~~~~~~y~~~~~~~--~~~~~~Id~~~--~~e~v~~~i~~~i~~ 202 (205)
T PRK00698 154 -----IEQEGLDFFERVREGYLELAEKE--PERIVVIDASQ--SLEEVHEDILAVIKA 202 (205)
T ss_pred -----hhhhhHHHHHHHHHHHHHHHHhC--CCeEEEEeCCC--CHHHHHHHHHHHHHH
Confidence 001111223333 2343332222 22568899999 999999999988864
No 91
>COG4639 Predicted kinase [General function prediction only]
Probab=99.54 E-value=6.6e-13 Score=91.74 Aligned_cols=114 Identities=23% Similarity=0.275 Sum_probs=87.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
++|.|||||||.++.. .....+++.|+++..+.... .......-.....+.+.+.+.+.+..
T Consensus 7 L~G~~~sGKsT~ak~n--~~~~~~lsld~~r~~lg~~~----------------~~e~sqk~~~~~~~~l~~~l~qrl~~ 68 (168)
T COG4639 7 LRGASGSGKSTFAKEN--FLQNYVLSLDDLRLLLGVSA----------------SKENSQKNDELVWDILYKQLEQRLRR 68 (168)
T ss_pred EecCCCCchhHHHHHh--CCCcceecHHHHHHHhhhch----------------hhhhccccHHHHHHHHHHHHHHHHHc
Confidence 5799999999999875 34688999999987542100 00011111124567778888899999
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCC
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE 133 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~ 133 (203)
|+..|+|+++.+.+.+..+..++..+++....++++.|. +.|..|...|.+.
T Consensus 69 Gk~tiidAtn~rr~~r~~l~~La~~y~~~~~~ivfdtp~-~~c~aRNk~~~Rq 120 (168)
T COG4639 69 GKFTIIDATNLRREDRRKLIDLAKAYGYKIYAIVFDTPL-ELCLARNKLRERQ 120 (168)
T ss_pred CCeEEEEcccCCHHHHHHHHHHHHHhCCeEEEEEEeCCH-HHHHHHhhccchh
Confidence 999999999999999999999999999999889998655 5899998755444
No 92
>PRK13975 thymidylate kinase; Provisional
Probab=99.53 E-value=4.2e-13 Score=99.18 Aligned_cols=172 Identities=17% Similarity=0.149 Sum_probs=86.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCC--ceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASALKI--PLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~--~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 78 (203)
|+|++||||||+++.|+++++. .+...|...... +...+... ... .......+....++.+. .+...+
T Consensus 7 ieG~~GsGKtT~~~~L~~~l~~~~~~~~~~~~~g~~--ir~~~~~~-~~~------~~~~~~~f~~~r~~~~~-~i~~~~ 76 (196)
T PRK13975 7 FEGIDGSGKTTQAKLLAEKLNAFWTCEPTDGKIGKL--IREILSGS-KCD------KETLALLFAADRVEHVK-EIEEDL 76 (196)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCeeECCCCChHHHH--HHHHHccC-CCC------HHHHHHHHHHHHHHHHH-HHHHHH
Confidence 5799999999999999999984 334433222111 11111100 000 00000011111112222 233334
Q ss_pred hCCCcEEEeCCCCch--------HhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCC
Q 039424 79 KLGVSVVVDSPLSRR--------AHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKP 150 (203)
Q Consensus 79 ~~~~~vIid~~~~~~--------~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 150 (203)
.. ..||+|...... ...+.+.........|..+|+|+++++ ++.+|+..|++.. .
T Consensus 77 ~~-~~vi~DRy~~S~~a~~~~~g~~~~~~~~~~~~~~~pd~vi~L~~~~e-~~~~Rl~~r~~~~---------------~ 139 (196)
T PRK13975 77 KK-RDVVCDRYVYSSIAYQSVQGIDEDFIYSINRYAKKPDLVFLLDVDIE-EALKRMETRDKEI---------------F 139 (196)
T ss_pred cC-CEEEEECchhHHHHHhcccCCCHHHHHHHHhCCCCCCEEEEEcCCHH-HHHHHHhccCccc---------------c
Confidence 33 568999632110 001111112221123557899998664 8999999886321 1
Q ss_pred CCHHHHHHHhhhhcCCCC--CCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 151 STWRDLERLLEGYCGCTE--YDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 151 ~~~e~~~~~~~~~~~~~~--~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
...+.+.+..+.|..... .+......++||+++ .+++++.++|.+.+..
T Consensus 140 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~Id~~~-~~~eev~~~I~~~i~~ 190 (196)
T PRK13975 140 EKKEFLKKVQEKYLELANNEKFMPKYGFIVIDTTN-KSIEEVFNEILNKIKD 190 (196)
T ss_pred chHHHHHHHHHHHHHHHhhcccCCcCCEEEEECCC-CCHHHHHHHHHHHHHH
Confidence 122222333333332221 111122569999986 6999999999998864
No 93
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.53 E-value=2.4e-13 Score=99.06 Aligned_cols=96 Identities=20% Similarity=0.254 Sum_probs=61.2
Q ss_pred HHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCH
Q 039424 74 ASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTW 153 (203)
Q Consensus 74 ~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~ 153 (203)
+...+..+..+|+|+.. ..+..+++. ...+.+|+|.++. +++.+|+..|.+. ..
T Consensus 83 i~~~~~~g~~vv~~g~~---~~~~~~~~~----~~~~~~i~l~~~~-~~~~~Rl~~R~~~------------------~~ 136 (179)
T TIGR02322 83 IDQWLEAGDVVVVNGSR---AVLPEARQR----YPNLLVVNITASP-DVLAQRLAARGRE------------------SR 136 (179)
T ss_pred HHHHHhcCCEEEEECCH---HHHHHHHHH----CCCcEEEEEECCH-HHHHHHHHHcCCC------------------CH
Confidence 44456778889999852 223333222 2245788888655 6999999988543 34
Q ss_pred HHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 154 RDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 154 e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+..++..+.... . .....++|+++. +++++.++|.+.+..
T Consensus 137 ~~~~~rl~~~~~~~-~--~~~~~~vi~~~~--~~ee~~~~i~~~l~~ 178 (179)
T TIGR02322 137 EEIEERLARSARFA-A--APADVTTIDNSG--SLEVAGETLLRLLRK 178 (179)
T ss_pred HHHHHHHHHHhhcc-c--ccCCEEEEeCCC--CHHHHHHHHHHHHcc
Confidence 56666665432211 1 112345578877 999999999998754
No 94
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.53 E-value=3.9e-13 Score=111.23 Aligned_cols=174 Identities=17% Similarity=0.143 Sum_probs=92.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh--hhhhhhhccCCCccc-------------------c-----chH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL--SLQQTLQKTTPHHQH-------------------A-----TSA 54 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~--~~~~~~~~~~~~~~~-------------------~-----~~~ 54 (203)
|.|++||||||+|+.|+++||+.++++|.+++.+. .++..+....+.... . +..
T Consensus 289 i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~i~~~~~dv~ 368 (512)
T PRK13477 289 IDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRAVTWLVLQEGIDPQDEEALAELLSDLKIELKPSSGSPQRVWINGEDVT 368 (512)
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEecCCceehHHHHHHHHcCcCCcCHHHHHHHHhcCCeeeccCCCCCceEEeCCcchH
Confidence 57999999999999999999999999999988742 222221110000000 0 000
Q ss_pred HHHHhhhhh---------hhhHHHHHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHH
Q 039424 55 AAAASSLLN---------DLSYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRR 125 (203)
Q Consensus 55 ~~~~~~~~~---------~~~~~~l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~ 125 (203)
......... ......+.+...+ +....++|+||.-....- . .+. .+-|||++++++.++|
T Consensus 369 ~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~-~~~~~~iV~eGRDigtvV-------~--P~A-dlKIfL~As~evRa~R 437 (512)
T PRK13477 369 EAIRSPEVTSSVSAIAAQPAVRQALVKQQQR-IGEKGGLVAEGRDIGTHV-------F--PDA-ELKIFLTASVEERARR 437 (512)
T ss_pred hhhcchhHHHHHHHHhCCHHHHHHHHHHHHH-HhhcCCEEEEcccceeEE-------c--CCC-CEEEEEECCHHHHHHH
Confidence 000000000 0111222222222 233446888883211100 0 011 2579999988754444
Q ss_pred HHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHhhhhcCCC------CCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 126 RLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCT------EYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 126 R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~------~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
|...-...+ ....+.+.+.+.+..++... ..+. ....++|||++ +++++++++|.+.+.
T Consensus 438 R~~~l~~Rp-------------ll~~~~e~i~~~i~eRd~~D~~R~i~PLy~-a~dai~IDTs~-lsieeVv~~Il~~i~ 502 (512)
T PRK13477 438 RALDLQAQG-------------FPVIDLEQLEAQIAERDRLDSTREIAPLRK-ADDAIELITDG-LSIEEVVDKIIDLYR 502 (512)
T ss_pred HHhhhhhCC-------------CccCCHHHHHHHHHHHHhhhcccccccccc-cCCeEEEECCC-CCHHHHHHHHHHHHH
Confidence 443312222 11124566666665554111 1221 23569999999 999999999999986
Q ss_pred c
Q 039424 200 H 200 (203)
Q Consensus 200 ~ 200 (203)
+
T Consensus 503 ~ 503 (512)
T PRK13477 503 D 503 (512)
T ss_pred H
Confidence 5
No 95
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=99.53 E-value=5.1e-14 Score=96.41 Aligned_cols=102 Identities=23% Similarity=0.305 Sum_probs=68.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|.||+||||+|.+||+.+|+++|..+++.+.-.-.. .+ + +.+...+ +..+.+.+.+...+.+
T Consensus 12 vtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~-gy---D----------E~y~c~i--~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 12 VTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYE-GY---D----------EEYKCHI--LDEDKVLDELEPLMIE 75 (176)
T ss_pred EeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchh-cc---c----------ccccCcc--ccHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999965411100 00 0 1111111 3445566677777777
Q ss_pred CCcEEEeCC---CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCC
Q 039424 81 GVSVVVDSP---LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE 133 (203)
Q Consensus 81 ~~~vIid~~---~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~ 133 (203)
| +.|+|.. +....| .+ ++|.|.|+- ++++.|+..|+.+
T Consensus 76 G-g~IVDyHgCd~Fperw----fd---------lVvVLr~~~-s~LY~RL~sRgY~ 116 (176)
T KOG3347|consen 76 G-GNIVDYHGCDFFPERW----FD---------LVVVLRTPN-SVLYDRLKSRGYS 116 (176)
T ss_pred C-CcEEeecccCccchhh----ee---------EEEEEecCc-hHHHHHHHHcCCC
Confidence 5 6899983 222222 11 467778755 6999999999865
No 96
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.52 E-value=2.3e-13 Score=112.90 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=85.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHH-HHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWK-IASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~ 79 (203)
|+|+|||||||+++.|++.+|++++++|.++++..+... ...+. ..++..++.+.. .+.+...
T Consensus 5 l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i---------------~~i~~-~~Ge~~fr~~E~~~l~~l~~ 68 (488)
T PRK13951 5 LVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSV---------------RRIFE-EDGEEYFRLKEKELLRELVE 68 (488)
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCH---------------HHHHH-HhhhHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999999766432110 01111 111122222222 2223223
Q ss_pred CCCcEEEeCC--CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH
Q 039424 80 LGVSVVVDSP--LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE 157 (203)
Q Consensus 80 ~~~~vIid~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~ 157 (203)
....+|..|. ....++++.+++ + .+|+|++++ +++.+|+..+. .| ... ...+.+.
T Consensus 69 ~~~~Vis~Gggvv~~~~~r~~l~~-----~---~vI~L~as~-e~l~~Rl~~~~-RP------------Ll~-~~~e~l~ 125 (488)
T PRK13951 69 RDNVVVATGGGVVIDPENRELLKK-----E---KTLFLYAPP-EVLMERVTTEN-RP------------LLR-EGKERIR 125 (488)
T ss_pred cCCEEEECCCccccChHHHHHHhc-----C---eEEEEECCH-HHHHHHhccCC-CC------------Ccc-ccHHHHH
Confidence 3333443442 334455554332 1 378898776 58999997653 22 011 1234555
Q ss_pred HHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHH
Q 039424 158 RLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVI 195 (203)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~ 195 (203)
+.++.+.++ |. . ...||+++ .++++++.+|+
T Consensus 126 ~L~~~R~~l--Y~-~---~~~IDt~~-~s~~e~~~~iv 156 (488)
T PRK13951 126 EIWERRKQF--YT-E---FRGIDTSK-LNEWETTALVV 156 (488)
T ss_pred HHHHHHHHH--Hh-c---ccEEECCC-CCHHHHHHHHH
Confidence 555544322 22 1 15899999 78988887774
No 97
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.51 E-value=1e-13 Score=112.44 Aligned_cols=167 Identities=20% Similarity=0.194 Sum_probs=94.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhh-h---hhhhc--cC----CCcc--ccchH-----HHHHhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSL-Q---QTLQK--TT----PHHQ--HATSA-----AAAASSLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~-~---~~~~~--~~----~~~~--~~~~~-----~~~~~~~~~ 63 (203)
|+|++||||||+++.|++ +|++++|+|.+.+.++.. . ..+.. +. +.+. ..... .......+.
T Consensus 6 ltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~~~~le 84 (395)
T PRK03333 6 LTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEARAVLN 84 (395)
T ss_pred EECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHHHHHHH
Confidence 689999999999999985 899999999998775421 1 11110 11 1111 00000 111122333
Q ss_pred hhhHHHHHHHHHHHhhC--CCc-EEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccC
Q 039424 64 DLSYDVIWKIASTQLKL--GVS-VVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVG 140 (203)
Q Consensus 64 ~~~~~~l~~~~~~~l~~--~~~-vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~ 140 (203)
.+.++.+.+.+.+.+.. +.. +|++.+...+.... ..+ . .+|++.++. ++..+|+..|.+.
T Consensus 85 ~i~hP~I~~~i~~~i~~~~~~~vvv~eipLL~E~~~~---~~~---D---~iI~V~ap~-e~ri~Rl~~rRg~------- 147 (395)
T PRK03333 85 GIVHPLVGARRAELIAAAPEDAVVVEDIPLLVESGMA---PLF---H---LVVVVDADV-EVRVRRLVEQRGM------- 147 (395)
T ss_pred HhhhHHHHHHHHHHHHhcCCCCEEEEEeeeeecCCch---hhC---C---EEEEEECCH-HHHHHHHHhcCCC-------
Confidence 34445555444444332 334 44455544332211 122 1 477888765 5899999886433
Q ss_pred CCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 141 DDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 141 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+....++..+...... ...++++|+|++ +++++..++.+.++.
T Consensus 148 -----------s~~~a~~ri~~Q~~~e~k--~~~AD~vIdN~~--s~e~l~~~v~~~l~~ 192 (395)
T PRK03333 148 -----------AEADARARIAAQASDEQR--RAVADVWLDNSG--TPDELVEAVRALWAD 192 (395)
T ss_pred -----------CHHHHHHHHHhcCChHHH--HHhCCEEEECCC--CHHHHHHHHHHHHHH
Confidence 334555555544332222 223569999998 999999998877653
No 98
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.51 E-value=1e-13 Score=97.99 Aligned_cols=107 Identities=22% Similarity=0.234 Sum_probs=73.1
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|.|||||||+|+.|++.+ + +.+++.|.+++.+.... .+ .+ ... ...+..+...+.
T Consensus 4 i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~-~~---~~---------~~~-----~~~~~~~~~~a~ 65 (149)
T cd02027 4 LTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDL-GF---SR---------EDR-----EENIRRIAEVAK 65 (149)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhcc-CC---Cc---------chH-----HHHHHHHHHHHH
Confidence 57999999999999999988 5 34678888876543200 00 00 000 011222333444
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHH
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLE 128 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~ 128 (203)
..+.+|..||+|.++....++..++.+++ +.++.+|+|.++.+ ++.+|..
T Consensus 66 ~l~~~G~~VIid~~~~~~~~R~~~~~l~~--~~~~~~i~l~~~~e-~~~~R~~ 115 (149)
T cd02027 66 LLADAGLIVIAAFISPYREDREAARKIIG--GGDFLEVFVDTPLE-VCEQRDP 115 (149)
T ss_pred HHHhCCCEEEEccCCCCHHHHHHHHHhcC--CCCEEEEEEeCCHH-HHHHhCc
Confidence 55677899999999888788888777765 68889999998764 7888853
No 99
>PRK08233 hypothetical protein; Provisional
Probab=99.51 E-value=1.4e-13 Score=100.45 Aligned_cols=162 Identities=15% Similarity=0.128 Sum_probs=83.0
Q ss_pred CCCCCCCChHHHHHHHHHhCC-CceechhhHhhhhhh--hhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK-IPLIDKDDVRDCTLS--LQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQ 77 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-~~~i~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (203)
|+|+|||||||+|+.|++.++ ..++..|.++....+ ....+.. .. .+.......+.+.+...
T Consensus 8 I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~-~~--------------~~~~~~~~~~~~~l~~~ 72 (182)
T PRK08233 8 IAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDK-GA--------------NYSEWVLTPLIKDIQEL 72 (182)
T ss_pred EECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhc-cC--------------ChhhhhhHHHHHHHHHH
Confidence 579999999999999999996 455556655422111 0000000 00 00112223344444444
Q ss_pred hhCC--CcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHH
Q 039424 78 LKLG--VSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 78 l~~~--~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (203)
+... ..+|+|+++.. ..+.+.... ..+|++.++++ ++.+|...|..... + .+.-.+.
T Consensus 73 ~~~~~~~~vivd~~~~~--~~~~~~~~~------d~~i~l~~~~~-~~~~R~~~R~~~~~-----~-------~~~~~~~ 131 (182)
T PRK08233 73 IAKSNVDYIIVDYPFAY--LNSEMRQFI------DVTIFIDTPLD-IAMARRILRDFKED-----T-------GNEIHND 131 (182)
T ss_pred HcCCCceEEEEeeehhh--ccHHHHHHc------CEEEEEcCCHH-HHHHHHHHHHhhhc-----c-------ccchhhH
Confidence 4333 34677876432 112222222 26888887664 77877776653210 0 0001111
Q ss_pred HHHHhhh----hcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 156 LERLLEG----YCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 156 ~~~~~~~----~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+...+.. |...... ......++||++. +++++.++|...+...
T Consensus 132 ~~~~~~~~~~~y~~~~~~-~~~~~~~vId~~~--~~e~i~~~i~~~l~~~ 178 (182)
T PRK08233 132 LKHYLNYARPLYLEALHT-VKPNADIVLDGAL--SVEEIINQIEEELYRR 178 (182)
T ss_pred HHHHHHHHHHHHHHHhhc-CccCCeEEEcCCC--CHHHHHHHHHHHHHhC
Confidence 2211111 1110010 1123568899887 9999999999988754
No 100
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.50 E-value=1.1e-12 Score=113.16 Aligned_cols=175 Identities=17% Similarity=0.126 Sum_probs=102.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh--hhhhhhhccCCCccc---------c----------chHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL--SLQQTLQKTTPHHQH---------A----------TSAAAAAS 59 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~--~~~~~~~~~~~~~~~---------~----------~~~~~~~~ 59 (203)
|.||+||||||+|+.|+++||+++++++.+++.+. .++..+...+..... - +.......
T Consensus 447 i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 526 (661)
T PRK11860 447 IDGPTASGKGTVAARVAEALGYHYLDSGALYRLTALAALRAGVALDDEAAIAALARGLPVRFEGDRIWLGGEDVTDAIRT 526 (661)
T ss_pred eeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHHHHHHHHcCcCCCCHHHHHHHHhcCCeeecCCeEEECCeEchhhhCc
Confidence 46999999999999999999999999999988742 333332111100000 0 00000000
Q ss_pred hhhh---------hhhHHHHHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhc
Q 039424 60 SLLN---------DLSYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGR 130 (203)
Q Consensus 60 ~~~~---------~~~~~~l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R 130 (203)
.... ......+.....+ +....++|+||.-..-.- . .+.+ +-|||++++++-.+||..+-
T Consensus 527 ~~v~~~~s~~a~~~~vr~~l~~~qr~-~~~~~~~v~eGRdigtvv-------~--p~a~-~kifl~a~~~~Ra~Rr~~~~ 595 (661)
T PRK11860 527 EAAGMGASRVSALPAVRAALLALQRS-FRRLPGLVADGRDMGTVI-------F--PDAA-LKVFLTASAEARAERRYKQL 595 (661)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH-HhhCCCEEEECCCCccEE-------C--CCCC-eEEEEECChhHHHHHHHHHH
Confidence 0000 0112222223222 333457999993221110 0 1122 46999999988888887753
Q ss_pred CCCCCCCccCCCCCCCCCCCCCHHHHHHHhhhhcCCCC-----CCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 131 GNEGGCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTE-----YDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-----~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
...+ ...+++++.+.+..++.... -...+...++|||++ ++++++++.|.+.+.+.
T Consensus 596 ~~~~--------------~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~-~~~~~v~~~i~~~i~~~ 656 (661)
T PRK11860 596 ISKG--------------ISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSD-LTIEQAVAQVLDWWQER 656 (661)
T ss_pred HhCC--------------CCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCC-CCHHHHHHHHHHHHHhh
Confidence 2221 12467777766666544322 122355789999999 99999999999998753
No 101
>PRK12338 hypothetical protein; Provisional
Probab=99.50 E-value=1.1e-12 Score=102.44 Aligned_cols=180 Identities=15% Similarity=0.186 Sum_probs=96.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee-chhhHhhhhhhhh-hh----hhccCC-Ccc------ccch-HHHHHhhh--hhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI-DKDDVRDCTLSLQ-QT----LQKTTP-HHQ------HATS-AAAAASSL--LND 64 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i-~~d~~~~~~~~~~-~~----~~~~~~-~~~------~~~~-~~~~~~~~--~~~ 64 (203)
|+|+|||||||+|+.||+.+|+.++ ++|.+++.+.+.. +. +...+. .+. .... ......++ ...
T Consensus 9 i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~gf~~q~~ 88 (319)
T PRK12338 9 IGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAGFEEHAS 88 (319)
T ss_pred EECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHHHHHHHH
Confidence 5799999999999999999999977 5666665444311 00 000000 000 0000 00001111 112
Q ss_pred hhHHHHHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCC
Q 039424 65 LSYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRP 144 (203)
Q Consensus 65 ~~~~~l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~ 144 (203)
.....+...+...+..|.++|++|....+.+..... . .....+.++++. ++++..++|+..|....+.|.
T Consensus 89 ~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~-~--~~~~~v~~~vl~-~dee~h~~Rf~~R~~~~~r~~------ 158 (319)
T PRK12338 89 FVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQ-F--EENASIHFFILS-ADEEVHKERFVKRAMEIKRGG------ 158 (319)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhh-h--cccCceEEEEEE-CCHHHHHHHHHHhhhccCCch------
Confidence 334445556666678899999999766655544311 1 112234445554 677899999999875431111
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 145 SSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 145 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.....++.+....+..... .. .....+|++. +.++.++++++.|..
T Consensus 159 ---~~l~~f~~Ir~Iq~~l~~~-A~---e~~VpvI~N~---did~Tv~~ile~I~e 204 (319)
T PRK12338 159 ---KQLEYFRENRIIHDHLVEQ-AR---EHNVPVIKND---DIDCTVKKMLSYIRE 204 (319)
T ss_pred ---hhhhChHHHHHHHHHHHHh-Hh---hCCCceeCCC---cHHHHHHHHHHHHHh
Confidence 1123445555443333221 11 1122334333 699999999988864
No 102
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.48 E-value=9e-13 Score=96.40 Aligned_cols=106 Identities=16% Similarity=0.253 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCC
Q 039424 66 SYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPS 145 (203)
Q Consensus 66 ~~~~l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~ 145 (203)
.|....+.+...+..|..+|+|... +.... +....+..+.+|++.+|+.+.+.+|+..|+..
T Consensus 79 ~YGt~~~~i~~~~~~g~~~i~d~~~---~g~~~---l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~------------ 140 (186)
T PRK14737 79 YYGTPKAFIEDAFKEGRSAIMDIDV---QGAKI---IKEKFPERIVTIFIEPPSEEEWEERLIHRGTD------------ 140 (186)
T ss_pred eecCcHHHHHHHHHcCCeEEEEcCH---HHHHH---HHHhCCCCeEEEEEECCCHHHHHHHHHhcCCC------------
Confidence 3455556677888999999999732 22233 22223334467888877777999999998653
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 146 SWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 146 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+.+.+|++.+....+ .....+.+|+|+. ++++.+++.+.|..
T Consensus 141 ------s~e~i~~Rl~~~~~e~~--~~~~~D~vI~N~d---le~a~~ql~~ii~~ 184 (186)
T PRK14737 141 ------SEESIEKRIENGIIELD--EANEFDYKIINDD---LEDAIADLEAIICG 184 (186)
T ss_pred ------CHHHHHHHHHHHHHHHh--hhccCCEEEECcC---HHHHHHHHHHHHhc
Confidence 55778888877543222 2233567888865 89999999888764
No 103
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.48 E-value=9.2e-13 Score=102.19 Aligned_cols=145 Identities=19% Similarity=0.124 Sum_probs=86.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHH-hh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQ-LK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-l~ 79 (203)
|+|++||||||+++.|+ .+|+.+++.-... ....+.+..... ..
T Consensus 11 i~G~~GsGKtt~~~~l~-~~g~~~~d~~~~~----------------------------------L~~~l~~~~~~~~~~ 55 (288)
T PRK05416 11 VTGLSGAGKSVALRALE-DLGYYCVDNLPPS----------------------------------LLPKLVELLAQSGGI 55 (288)
T ss_pred EECCCCCcHHHHHHHHH-HcCCeEECCcCHH----------------------------------HHHHHHHHHHhcCCC
Confidence 58999999999999997 6688776542220 001111222221 12
Q ss_pred CCCcEEEeCCCC--chHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHh-cCCCCCCCccCCCCCCCCCCC-CCHHH
Q 039424 80 LGVSVVVDSPLS--RRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEG-RGNEGGCGVVGDDRPSSWHKP-STWRD 155 (203)
Q Consensus 80 ~~~~vIid~~~~--~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~-R~~~~~~~~~~~~~~~~~~~~-~~~e~ 155 (203)
....+++|.... .....+.+..+. ..|..+.+|+|++++ +++.+|+.. |..+| .... ...+.
T Consensus 56 ~~~av~iD~r~~~~~~~~~~~~~~L~-~~g~~~~iI~L~a~~-e~L~~Rl~~~rr~RP------------Ll~~~~l~e~ 121 (288)
T PRK05416 56 RKVAVVIDVRSRPFFDDLPEALDELR-ERGIDVRVLFLDASD-EVLIRRYSETRRRHP------------LSGDGSLLEG 121 (288)
T ss_pred CCeEEEEccCchhhHHHHHHHHHHHH-HcCCcEEEEEEECCH-HHHHHHHhhcccCCC------------ccCCccHHHH
Confidence 344688887432 223334444444 347788889999876 589999975 34444 1111 12222
Q ss_pred HHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 156 LERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+.. ..+..++.. ++++|||++ ++++++.++|.+.+..
T Consensus 122 I~~eR---~~l~pl~~~--ADivIDTs~-ls~~el~e~I~~~l~~ 160 (288)
T PRK05416 122 IELER---ELLAPLRER--ADLVIDTSE-LSVHQLRERIRERFGG 160 (288)
T ss_pred HHHHH---hhhhhHHHh--CCEEEECCC-CCHHHHHHHHHHHHhc
Confidence 33222 222223333 459999999 8999999999998853
No 104
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.48 E-value=1.4e-12 Score=97.51 Aligned_cols=171 Identities=16% Similarity=0.148 Sum_probs=92.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh--hhhhhhh-----------------ccCCCcc------ccchHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL--SLQQTLQ-----------------KTTPHHQ------HATSAA 55 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~--~~~~~~~-----------------~~~~~~~------~~~~~~ 55 (203)
|.|++||||||+++.|++++++.++++|.+++.+. .+.+++. .....+. ......
T Consensus 7 i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 86 (217)
T TIGR00017 7 IDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVFLNGEDVSE 86 (217)
T ss_pred EECCCCCCHHHHHHHHHHHhCCceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEEEcCcchHH
Confidence 57999999999999999999999999999976542 1111110 0000000 000000
Q ss_pred HHHhhhh---------hhhhHHHHHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHH
Q 039424 56 AAASSLL---------NDLSYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRR 126 (203)
Q Consensus 56 ~~~~~~~---------~~~~~~~l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R 126 (203)
.+..... .+.....+.....+. ....+||+||....... . .+ ....|||.+++++ ..+|
T Consensus 87 ~ir~~~v~~~~s~~a~~p~VR~~l~~~qr~~-a~~~~~Vi~Gr~~~~~v-------~--~~-a~~~ifl~a~~~~-Ra~R 154 (217)
T TIGR00017 87 AIRTQEVANAASKVAVFPKVREALLKRQQAL-AKNDGIIADGRDIGTVV-------F--PN-AEVKIFLDASVEE-RAKR 154 (217)
T ss_pred HhcCHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhcCCEEEEEcCcceEE-------e--CC-CCEEEEEECCHHH-HHHH
Confidence 0000000 011223333333332 34457999996422110 1 11 2367899887764 4445
Q ss_pred HHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHhhhhcCCC---CCC--CCCCCeEEEecCCCCChHHHHHHHHHH
Q 039424 127 LEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCT---EYD--VGDVPKLTVDTTASVGFQELVSNVIEF 197 (203)
Q Consensus 127 ~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~---~~~--~~~~~~~~id~~~~~~~~e~~~~i~~~ 197 (203)
...|.... + ...+.+++.+.+..++... ... ......++|||+. ++++++++.|.+.
T Consensus 155 r~~~~~~~------------g-~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~-l~ieevv~~I~~~ 216 (217)
T TIGR00017 155 RYKQLQIK------------G-NEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSN-LSIDEVVEKILEY 216 (217)
T ss_pred HHHHHhcc------------C-CCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCC-CCHHHHHHHHHHh
Confidence 44443210 0 1135567776666653221 111 1234559999999 9999999999864
No 105
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.47 E-value=1.7e-12 Score=97.78 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=30.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~ 33 (203)
|.|+|||||||+|+.|++++|++++++|.+++.
T Consensus 9 i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 9 IDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 579999999999999999999999999998765
No 106
>PRK13974 thymidylate kinase; Provisional
Probab=99.47 E-value=2.5e-12 Score=96.20 Aligned_cols=110 Identities=16% Similarity=0.107 Sum_probs=64.5
Q ss_pred HHHHHHHHhhCCCcEEEeCCC------------CchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCC
Q 039424 70 IWKIASTQLKLGVSVVVDSPL------------SRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCG 137 (203)
Q Consensus 70 l~~~~~~~l~~~~~vIid~~~------------~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~ 137 (203)
+...+...+..|..||+|... ...+|...+..+....-.|..+|+|+++++ ++.+|+..|..+.
T Consensus 84 ~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~-~~~~R~~~R~dD~--- 159 (212)
T PRK13974 84 VSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVE-ESIRRRKNRKPDR--- 159 (212)
T ss_pred HHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHH-HHHHHHHhcccCc---
Confidence 344566777889888888721 112334444443332224677899998764 8999998774331
Q ss_pred ccCCCCCCCCCCCCCHHHHHHH-hhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 138 VVGDDRPSSWHKPSTWRDLERL-LEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 138 ~~~~~~~~~~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.......+..+ ...|. ++......++||++. +++++.++|.+.+..
T Consensus 160 -----------~e~~~~~y~~~v~~~y~----~y~~~~~~~~Ida~~--~~eeV~~~I~~~l~~ 206 (212)
T PRK13974 160 -----------IEAEGIEFLERVAEGFA----LIAEERNWKVISADQ--SIETISNEIKETLLN 206 (212)
T ss_pred -----------hhhhhHHHHHHHHHHHH----HHHhcCCEEEEeCCC--CHHHHHHHHHHHHHH
Confidence 00111122221 12221 122223568899999 999999999988864
No 107
>PRK08118 topology modulation protein; Reviewed
Probab=99.45 E-value=5.2e-13 Score=96.10 Aligned_cols=95 Identities=18% Similarity=0.187 Sum_probs=60.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|++.+++++++.|.+.+. +.+. ....+.....+...+ .
T Consensus 6 I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~------------~~w~--------------~~~~~~~~~~~~~~~-~ 58 (167)
T PRK08118 6 LIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK------------PNWE--------------GVPKEEQITVQNELV-K 58 (167)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCceecchhhcc------------cCCc--------------CCCHHHHHHHHHHHh-c
Confidence 579999999999999999999999999998642 1000 001111222333333 3
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcC
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRG 131 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~ 131 (203)
+..||+||.+... ++..... ...+|+|++|. +++..|+..|.
T Consensus 59 ~~~wVidG~~~~~--~~~~l~~------~d~vi~Ld~p~-~~~~~R~~~R~ 100 (167)
T PRK08118 59 EDEWIIDGNYGGT--MDIRLNA------ADTIIFLDIPR-TICLYRAFKRR 100 (167)
T ss_pred CCCEEEeCCcchH--HHHHHHh------CCEEEEEeCCH-HHHHHHHHHHH
Confidence 4579999976532 2221111 22678898765 58888888773
No 108
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=99.45 E-value=4.7e-12 Score=93.62 Aligned_cols=172 Identities=17% Similarity=0.170 Sum_probs=97.5
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCceech--------hhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIPLIDK--------DDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDV 69 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~~i~~--------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (203)
|.|+.||||||+++.|++.+ |+.++-+ +...+.+. + ++. .... .....-.+.....+.
T Consensus 8 iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~l-----l---~~~-~~~~--~~~e~lLfaadR~~h 76 (208)
T COG0125 8 IEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELL-----L---NGE-EKLS--PKAEALLFAADRAQH 76 (208)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHH-----c---CCc-cCCC--HHHHHHHHHHHHHHH
Confidence 57999999999999999888 4333322 11111111 0 110 0000 011111111222344
Q ss_pred HHHHHHHHhhCCCcEEEeCCCCc------------hHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCC-CCC
Q 039424 70 IWKIASTQLKLGVSVVVDSPLSR------------RAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE-GGC 136 (203)
Q Consensus 70 l~~~~~~~l~~~~~vIid~~~~~------------~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~-~~~ 136 (203)
+.+.+...+..|..||+|..... ..+...+.+.+...-.|..+++|+.+++ +..+|+.+|+.. +
T Consensus 77 ~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e-~al~R~~~r~~~~~-- 153 (208)
T COG0125 77 LEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPE-VALERIRKRGELRD-- 153 (208)
T ss_pred HHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHH-HHHHHHHhcCCccc--
Confidence 67777888899999999983221 1233332223321115778999998764 899999999765 2
Q ss_pred CccCCCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 137 GVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 137 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+ .....+.+.+..+.|..+...+.. ..++||++. +++++.+.|...+..
T Consensus 154 --r~--------E~~~~~f~~kvr~~Y~~la~~~~~--r~~vIda~~--~~e~v~~~i~~~l~~ 203 (208)
T COG0125 154 --RF--------EKEDDEFLEKVREGYLELAAKFPE--RIIVIDASR--PLEEVHEEILKILKE 203 (208)
T ss_pred --hh--------hhHHHHHHHHHHHHHHHHHhhCCC--eEEEEECCC--CHHHHHHHHHHHHHH
Confidence 00 001111234444445433332222 568999999 999999999998864
No 109
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.44 E-value=1.3e-12 Score=91.97 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=75.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|.|+|||||||+|+.|++++|+++++.|.+.......... . .... ......+.+.... +..
T Consensus 4 i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~---------------~--~~~~-~~i~~~l~~~~~~-~~~ 64 (147)
T cd02020 4 IDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLAS---------------E--VAAI-PEVRKALDERQRE-LAK 64 (147)
T ss_pred EECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHH---------------H--hccc-HhHHHHHHHHHHH-Hhh
Confidence 5799999999999999999999999999653331110000 0 0000 0111222333333 333
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHh
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLL 160 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 160 (203)
+..||+||....... . .....+|++.++++ ...+|+..|.... ....+.+++.+++
T Consensus 65 ~~~~Vidg~~~~~~~-------~---~~~~~~i~l~~~~~-~r~~R~~~r~~~~-------------~~~~~~~~~~~~~ 120 (147)
T cd02020 65 KPGIVLEGRDIGTVV-------F---PDADLKIFLTASPE-VRAKRRAKQLQAK-------------GEGVDLEEILAEI 120 (147)
T ss_pred CCCEEEEeeeeeeEE-------c---CCCCEEEEEECCHH-HHHHHHHHHHHhC-------------CCCCCHHHHHHHH
Confidence 457999996532110 0 11225688887664 7888888752110 0012445544444
Q ss_pred hhhcC-----CCCCCCCCCCeEEEecC
Q 039424 161 EGYCG-----CTEYDVGDVPKLTVDTT 182 (203)
Q Consensus 161 ~~~~~-----~~~~~~~~~~~~~id~~ 182 (203)
...+. ...++.....+++|||+
T Consensus 121 ~~~d~~~~~~~~~~~~~~~~dl~i~~~ 147 (147)
T cd02020 121 IERDERDSTRYVAPLKLAEDAIVIDTS 147 (147)
T ss_pred HHHHHHhhhcccccccCCCCcEEEeCc
Confidence 44322 22334444567888875
No 110
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=99.44 E-value=5.2e-12 Score=110.36 Aligned_cols=73 Identities=16% Similarity=0.063 Sum_probs=54.5
Q ss_pred EEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHhhhhcCCCC-----CCCCCCCeEEEecCCCC
Q 039424 111 VIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTE-----YDVGDVPKLTVDTTASV 185 (203)
Q Consensus 111 ~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-----~~~~~~~~~~id~~~~~ 185 (203)
+-|||++++++-++||..+.... .+++.+...+..++.... -...+...++||||+ +
T Consensus 209 ~KifL~As~e~RA~RR~~e~~~~-----------------~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDts~-l 270 (863)
T PRK12269 209 LKCYLDASIEARVARRWAQGTSR-----------------LSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDTSC-L 270 (863)
T ss_pred EEEEEECCHHHHHHHHHHhhhcc-----------------CCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEECCC-C
Confidence 46899999998888888775432 367777777766654332 123466789999999 9
Q ss_pred ChHHHHHHHHHHHhcc
Q 039424 186 GFQELVSNVIEFILHI 201 (203)
Q Consensus 186 ~~~e~~~~i~~~i~~~ 201 (203)
+.++++++|++.+...
T Consensus 271 ~ieevv~~i~~~~~~~ 286 (863)
T PRK12269 271 TIEEVCERIAREAHRR 286 (863)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988753
No 111
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=99.43 E-value=1e-12 Score=96.31 Aligned_cols=166 Identities=19% Similarity=0.231 Sum_probs=86.8
Q ss_pred CCCCCCCChHHHHHHHHHhCC---Cceec----hh-hHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhH-HHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK---IPLID----KD-DVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSY-DVIW 71 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~---~~~i~----~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~ 71 (203)
|.|+.||||||+++.|++.+. ..++- .+ .+.+.+.. .+...... .......+-.... ..+.
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~---~l~~~~~~-------~~~~~~~l~~a~r~~~~~ 70 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRE---LLRSESEL-------SPEAEALLFAADRAWHLA 70 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHH---HHHTSSTC-------GHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHH---HHhcccCC-------CHHHHHHHHHHHHHHHHH
Confidence 579999999999999999883 32111 11 11111110 01000010 0111111111111 2334
Q ss_pred HHHHHHhhCCCcEEEeCC---------CCchHhHHHHHHHHHhhC--CeEEEEEecCCCHHHHHHHHHhcCCCCCCCccC
Q 039424 72 KIASTQLKLGVSVVVDSP---------LSRRAHLEKLVKLAGEMR--AGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVG 140 (203)
Q Consensus 72 ~~~~~~l~~~~~vIid~~---------~~~~~~~~~~~~~~~~~~--~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~ 140 (203)
..+...+..|..||+|.. .......+.+..+..... .|..+|+|+.++ +++.+|+..|+...
T Consensus 71 ~~I~~~l~~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~p-e~~~~R~~~r~~~~------ 143 (186)
T PF02223_consen 71 RVIRPALKRGKIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDP-EEALKRIAKRGEKD------ 143 (186)
T ss_dssp HTHHHHHHTTSEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCH-HHHHHHHHHTSSTT------
T ss_pred HHHHHHHcCCCEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCH-HHHHHHHHcCCccc------
Confidence 566677889999999982 111001223333333333 667788888766 58999999997721
Q ss_pred CCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHH
Q 039424 141 DDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNV 194 (203)
Q Consensus 141 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i 194 (203)
+ ......+.+.+....|..+.. .....++||++. +++++.++|
T Consensus 144 ~------~~~~~~~~~~~~~~~y~~l~~---~~~~~~iid~~~--~~e~v~~~I 186 (186)
T PF02223_consen 144 D------EEEEDLEYLRRVREAYLELAK---DPNNWVIIDASR--SIEEVHEQI 186 (186)
T ss_dssp T------TTTHHHHHHHHHHHHHHHHHH---TTTTEEEEETTS---HHHHHHHH
T ss_pred h------HHHHHHHHHHHHHHHHHHHHc---CCCCEEEEECCC--CHHHHHhhC
Confidence 0 001122333333334433322 234779999999 999999886
No 112
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.43 E-value=4.4e-12 Score=93.65 Aligned_cols=166 Identities=15% Similarity=0.144 Sum_probs=82.7
Q ss_pred CCCCCCCChHHHHHHHHHhCC---Cceech--------hhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK---IPLIDK--------DDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDV 69 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~---~~~i~~--------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (203)
|.|+|||||||+++.|++.++ +.++-. +...+... ....+... . .......+.......
T Consensus 8 ieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~------~~~~~~~~--~--~~~~~~l~~~~r~~~ 77 (195)
T TIGR00041 8 IEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELL------LNENDEPL--T--DKAEALLFAADRHEH 77 (195)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHH------cCCCccCC--C--HHHHHHHHHHHHHHH
Confidence 579999999999999999984 333211 11111110 00001000 0 000000010011123
Q ss_pred HHHHHHHHhhCCCcEEEeCCCCch---------HhHHHHHHHHHhhC--CeEEEEEecCCCHHHHHHHHHhcCCCCCCCc
Q 039424 70 IWKIASTQLKLGVSVVVDSPLSRR---------AHLEKLVKLAGEMR--AGLVIVECKPSDEAEWRRRLEGRGNEGGCGV 138 (203)
Q Consensus 70 l~~~~~~~l~~~~~vIid~~~~~~---------~~~~~~~~~~~~~~--~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~ 138 (203)
+...+...+..+..||+|...... ...+.+..+..... .|..+|+|.+++ +.+.+|+..|+...
T Consensus 78 ~~~~i~~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~-~~~~~R~~~r~~~~---- 152 (195)
T TIGR00041 78 LEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDP-EVALERLRKRGELD---- 152 (195)
T ss_pred HHHHHHHHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCH-HHHHHHHHhcCCcc----
Confidence 334455667778889999621110 01122222222222 255788888765 58999999986531
Q ss_pred cCCCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHH
Q 039424 139 VGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNV 194 (203)
Q Consensus 139 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i 194 (203)
. ......+.+.+..+.|..+... ....++||++. +++++.++|
T Consensus 153 ---~-----~~~~~~~~~~~~~~~y~~~~~~---~~~~~~id~~~--~~e~v~~~i 195 (195)
T TIGR00041 153 ---R-----EEFEKLDFFEKVRQRYLELADK---EKSIHVIDATN--SVEEVEQDI 195 (195)
T ss_pred ---h-----HHHHHHHHHHHHHHHHHHHHcC---CCcEEEEeCCC--CHHHHHhhC
Confidence 0 0001122233333334322221 33678999999 999998764
No 113
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=99.43 E-value=7.5e-12 Score=94.08 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI 25 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i 25 (203)
|.|..||||||+++.|++.++..++
T Consensus 4 iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 4 VDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCee
Confidence 5799999999999999999987555
No 114
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.43 E-value=2.2e-12 Score=95.60 Aligned_cols=120 Identities=23% Similarity=0.316 Sum_probs=74.3
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQ 77 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (203)
+.|+|||||||++..+...+ ++.+|+.|.++..+......... .+.. ........+.......+...
T Consensus 20 ~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~-~~~~---------~~~~~~~~a~~~~~~~~~~a 89 (199)
T PF06414_consen 20 IAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKA-DPDE---------ASELTQKEASRLAEKLIEYA 89 (199)
T ss_dssp EES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHH-HCCC---------THHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhh-hhhh---------hHHHHHHHHHHHHHHHHHHH
Confidence 46999999999999999987 68899999997664221111000 0100 00111122333445566677
Q ss_pred hhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcC
Q 039424 78 LKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRG 131 (203)
Q Consensus 78 l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~ 131 (203)
+..+.++|+|+++........+.+.++..|+.+.++++.+++ +..+.|+..|-
T Consensus 90 ~~~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~-e~s~~rv~~R~ 142 (199)
T PF06414_consen 90 IENRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPP-ELSIERVRQRY 142 (199)
T ss_dssp HHCT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---H-HHHHHHHHHHH
T ss_pred HHcCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCH-HHHHHHHHHHH
Confidence 788999999999888777776777788889999888888754 68999998883
No 115
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=99.43 E-value=3.9e-12 Score=103.26 Aligned_cols=129 Identities=25% Similarity=0.264 Sum_probs=82.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc-eechhhHhhhhhhhhh-h------------hhccCCCcc---ccchHHHHHhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIP-LIDKDDVRDCTLSLQQ-T------------LQKTTPHHQ---HATSAAAAASSLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~-~i~~d~~~~~~~~~~~-~------------~~~~~~~~~---~~~~~~~~~~~~~~ 63 (203)
++|+|||||||+|..||..+|+. ++++|.+++.+.+.-. . +....+.+. ..........++..
T Consensus 260 ~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~vi~Gf~~ 339 (475)
T PRK12337 260 IGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAEVLRGFRD 339 (475)
T ss_pred EECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchHHHHHHHHH
Confidence 57999999999999999999987 7799998776543210 0 000000000 00000111222221
Q ss_pred --hhhHHHHHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCC
Q 039424 64 --DLSYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE 133 (203)
Q Consensus 64 --~~~~~~l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~ 133 (203)
......+...+...+..|.++|+||....+..++. ....+...+.+.|.+++++..++|+..|...
T Consensus 340 q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~----~~~~~~~~i~flv~isdeeeH~~Rf~~Ra~~ 407 (475)
T PRK12337 340 QVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRH----PYQAGALVVPMLVTLPDEALHRRRFELRDRE 407 (475)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHH----HHhcCCceEEEEEEECCHHHHHHHHHHHhhh
Confidence 12344467788888999999999998877766552 2233455566677778899999999999765
No 116
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.42 E-value=3.2e-12 Score=95.20 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=66.3
Q ss_pred HHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCC
Q 039424 71 WKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKP 150 (203)
Q Consensus 71 ~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 150 (203)
...+...+..|..+|+|... +....+++ ...+..+|++.+++.+++.+|+..|+.+
T Consensus 93 ~~~i~~~~~~g~~vi~~~~~---~g~~~l~~----~~pd~~~if~~pps~e~l~~Rl~~R~~~----------------- 148 (206)
T PRK14738 93 KAPVRQALASGRDVIVKVDV---QGAASIKR----LVPEAVFIFLAPPSMDELTRRLELRRTE----------------- 148 (206)
T ss_pred HHHHHHHHHcCCcEEEEcCH---HHHHHHHH----hCCCeEEEEEeCCCHHHHHHHHHHcCCC-----------------
Confidence 34666778889999998754 23333322 2334455566555666899999998643
Q ss_pred CCHHHHHHHhhhhcC-CCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 151 STWRDLERLLEGYCG-CTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 151 ~~~e~~~~~~~~~~~-~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+.+.+|+..... +.... ....++||++. +++++.++|.+.|..
T Consensus 149 -~~~~~~~Rl~~~~~e~~~~~--~~~~~iId~~~--~~e~v~~~i~~~l~~ 194 (206)
T PRK14738 149 -SPEELERRLATAPLELEQLP--EFDYVVVNPED--RLDEAVAQIMAIISA 194 (206)
T ss_pred -CHHHHHHHHHHHHHHHhccc--CCCEEEECCCC--CHHHHHHHHHHHHHH
Confidence 45677777765421 21111 12557899988 999999999998864
No 117
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.41 E-value=3.9e-13 Score=95.96 Aligned_cols=167 Identities=19% Similarity=0.187 Sum_probs=94.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCcccc-chHH----HHH--hhhhhhhhHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHA-TSAA----AAA--SSLLNDLSYDVIWKI 73 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~--~~~~~~~~~~~l~~~ 73 (203)
|.||+|+||||+.+.|-+..++.+--+-..+..-.+..++ .+-.+... .+.. ..+ ++.+..--|......
T Consensus 9 lsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G---~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~~~~ 85 (191)
T COG0194 9 LSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDG---VDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTSREP 85 (191)
T ss_pred EECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCC---ceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCcHHH
Confidence 5799999999999999888754332222222111110000 00000000 0000 000 111111223444556
Q ss_pred HHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCH
Q 039424 74 ASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTW 153 (203)
Q Consensus 74 ~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~ 153 (203)
+...++.|..||+|--.. -..+..+.++ +.+.|++.+|..+.+.+|+..|+.. +.
T Consensus 86 ve~~~~~G~~vildId~q------Ga~qvk~~~p-~~v~IFi~pPs~eeL~~RL~~Rgtd------------------s~ 140 (191)
T COG0194 86 VEQALAEGKDVILDIDVQ------GALQVKKKMP-NAVSIFILPPSLEELERRLKGRGTD------------------SE 140 (191)
T ss_pred HHHHHhcCCeEEEEEehH------HHHHHHHhCC-CeEEEEEcCCCHHHHHHHHHccCCC------------------CH
Confidence 778889999999996322 1222233333 6788999999999999999999764 78
Q ss_pred HHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 154 RDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 154 e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+.+|+.......... ..-+.+|.|.. ++....+|...+..
T Consensus 141 e~I~~Rl~~a~~Ei~~~--~~fdyvivNdd---~e~a~~~l~~ii~a 182 (191)
T COG0194 141 EVIARRLENAKKEISHA--DEFDYVIVNDD---LEKALEELKSIILA 182 (191)
T ss_pred HHHHHHHHHHHHHHHHH--HhCCEEEECcc---HHHHHHHHHHHHHH
Confidence 88888887654222222 12346666665 78888888776653
No 118
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.40 E-value=8.5e-12 Score=108.49 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=31.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCT 34 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~ 34 (203)
|.|||||||||+|+.||+++|+.+++++.+++.+
T Consensus 6 I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 6 IDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 5799999999999999999999999999997763
No 119
>PLN02924 thymidylate kinase
Probab=99.40 E-value=7.8e-12 Score=93.71 Aligned_cols=169 Identities=18% Similarity=0.131 Sum_probs=89.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhh----hh--hhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDC----TL--SLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIA 74 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (203)
|+|++||||||+++.|++.++...+....+++. .. .+...+....... .....-.+.....+. ...+
T Consensus 21 iEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~------~~~~~llf~adR~~~-~~~I 93 (220)
T PLN02924 21 LEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLD------DRAIHLLFSANRWEK-RSLM 93 (220)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCC------HHHHHHHHHHHHHHH-HHHH
Confidence 579999999999999999985332221111000 00 0111111111100 000000111111122 2457
Q ss_pred HHHhhCCCcEEEeCCCCch--------HhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCC
Q 039424 75 STQLKLGVSVVVDSPLSRR--------AHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSS 146 (203)
Q Consensus 75 ~~~l~~~~~vIid~~~~~~--------~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~ 146 (203)
...+..|..||+|...... ...+++..+......|.++|+|+.+++ ++.+|...+ .+.
T Consensus 94 ~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~-~a~~R~~~~-~~~------------ 159 (220)
T PLN02924 94 ERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPE-EAAERGGYG-GER------------ 159 (220)
T ss_pred HHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHH-HHHHHhccC-ccc------------
Confidence 7778899999999843211 012223333333335778899997665 788885432 111
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 147 WHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 147 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
-+..+.+.+..+.|..+.. ....+||++. +++++.++|.+.+..
T Consensus 160 ---~E~~~~~~rv~~~Y~~la~-----~~~~vIDa~~--sieeV~~~I~~~I~~ 203 (220)
T PLN02924 160 ---YEKLEFQKKVAKRFQTLRD-----SSWKIIDASQ--SIEEVEKKIREVVLD 203 (220)
T ss_pred ---cccHHHHHHHHHHHHHHhh-----cCEEEECCCC--CHHHHHHHHHHHHHH
Confidence 0233444444444543322 2457789998 999999999988764
No 120
>PRK07261 topology modulation protein; Provisional
Probab=99.40 E-value=9.4e-13 Score=95.18 Aligned_cols=96 Identities=24% Similarity=0.169 Sum_probs=62.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|++.+++++++.|.+... +.+. ....+.+...+...+.+
T Consensus 5 i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~------------~~~~--------------~~~~~~~~~~~~~~~~~ 58 (171)
T PRK07261 5 IIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ------------PNWQ--------------ERDDDDMIADISNFLLK 58 (171)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec------------cccc--------------cCCHHHHHHHHHHHHhC
Confidence 589999999999999999999999999988532 1000 01112233344455555
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcC
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRG 131 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~ 131 (203)
+. +|+||++........+. .+ . .+|+|++|- .+|..|+..|.
T Consensus 59 ~~-wIidg~~~~~~~~~~l~-~a---d---~vI~Ld~p~-~~~~~R~lkR~ 100 (171)
T PRK07261 59 HD-WIIDGNYSWCLYEERMQ-EA---D---QIIFLNFSR-FNCLYRAFKRY 100 (171)
T ss_pred CC-EEEcCcchhhhHHHHHH-HC---C---EEEEEcCCH-HHHHHHHHHHH
Confidence 54 99999866422222221 22 2 578888654 58888887774
No 121
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.40 E-value=2.2e-12 Score=96.02 Aligned_cols=101 Identities=16% Similarity=0.156 Sum_probs=65.0
Q ss_pred HHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCC
Q 039424 71 WKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKP 150 (203)
Q Consensus 71 ~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 150 (203)
...+...+..|..+|+|..... ... +....+ ...+|++.+++.+++.+|+..|+..
T Consensus 85 ~~~i~~~l~~g~~vi~dl~~~g---~~~---l~~~~~-~~~~I~i~~~s~~~l~~Rl~~R~~~----------------- 140 (205)
T PRK00300 85 RSPVEEALAAGKDVLLEIDWQG---ARQ---VKKKMP-DAVSIFILPPSLEELERRLRGRGTD----------------- 140 (205)
T ss_pred HHHHHHHHHcCCeEEEeCCHHH---HHH---HHHhCC-CcEEEEEECcCHHHHHHHHHhcCCC-----------------
Confidence 4556777788999999975422 122 222223 3345566556667899999998653
Q ss_pred CCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 151 STWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 151 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+.+.++++.+.....+... .+.+|. ++ +++++..+|...+...
T Consensus 141 -~~~~i~~rl~~~~~~~~~~~~--~d~vi~-n~--~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 141 -SEEVIARRLAKAREEIAHASE--YDYVIV-ND--DLDTALEELKAIIRAE 185 (205)
T ss_pred -CHHHHHHHHHHHHHHHHhHHh--CCEEEE-CC--CHHHHHHHHHHHHHHH
Confidence 567888888766433333222 335554 45 7999999999988754
No 122
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=99.39 E-value=5e-12 Score=94.24 Aligned_cols=150 Identities=18% Similarity=0.197 Sum_probs=88.0
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
++|.||.|||++|+.|++.|+ ..+.+.++.++...+.......-.|. ...........+...+.+.+.
T Consensus 17 mVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~-------n~~~~~~R~~~a~~~l~dl~~ 89 (222)
T PF01591_consen 17 MVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPD-------NEEAKKLREQIAKEALEDLIE 89 (222)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT--------HHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCC-------ChHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999998774 45788999988765421111111221 111112222234444444444
Q ss_pred HHh-hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCC-CCCCccCCCCCCCCCCCCCH
Q 039424 76 TQL-KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE-GGCGVVGDDRPSSWHKPSTW 153 (203)
Q Consensus 76 ~~l-~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~-~~~~~~~~~~~~~~~~~~~~ 153 (203)
-.. ..|...|+|+++...+.|..+...+...+.++++|.+.|.+++.+.+.+...... | -|.+ +-.....
T Consensus 90 ~l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~sp----DY~~----~~~e~A~ 161 (222)
T PF01591_consen 90 WLQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERNIREKKQNSP----DYKG----MDPEEAI 161 (222)
T ss_dssp HHHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHHHHHHHTTSG----GGTT----S-HHHHH
T ss_pred HHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcCCc----cccc----CCHHHHH
Confidence 433 3578899999999999999999999999999999999999887666666544322 2 1110 0011233
Q ss_pred HHHHHHhhhhcC
Q 039424 154 RDLERLLEGYCG 165 (203)
Q Consensus 154 e~~~~~~~~~~~ 165 (203)
+.+.+|++.|+.
T Consensus 162 ~Df~~RI~~Ye~ 173 (222)
T PF01591_consen 162 EDFKKRIEHYEK 173 (222)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHhhcc
Confidence 577788887753
No 123
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.37 E-value=8.4e-12 Score=90.97 Aligned_cols=165 Identities=18% Similarity=0.152 Sum_probs=90.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH-hhhhhhhhhhhhccCCCcccc--chHHHHHh------hhhhhhhHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV-RDCTLSLQQTLQKTTPHHQHA--TSAAAAAS------SLLNDLSYDVIW 71 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~l~ 71 (203)
|+||+||||||+++.|++.++..++..... +....+.... ....... ........ ..+....|....
T Consensus 6 l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~ 81 (180)
T TIGR03263 6 ISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDG----VDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK 81 (180)
T ss_pred EECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCC----cEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence 579999999999999998775444332211 1110000000 0000000 00000000 001111244445
Q ss_pred HHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCC
Q 039424 72 KIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPS 151 (203)
Q Consensus 72 ~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 151 (203)
+.+...+.+|..+|+|..... ... +.+..+.+ ..|++.+++.+.+.+|+..|...
T Consensus 82 ~~i~~~~~~g~~vi~d~~~~~---~~~---~~~~~~~~-~~i~~~~~~~e~~~~Rl~~r~~~------------------ 136 (180)
T TIGR03263 82 SPVEEALAAGKDVLLEIDVQG---ARQ---VKKKFPDA-VSIFILPPSLEELERRLRKRGTD------------------ 136 (180)
T ss_pred HHHHHHHHCCCeEEEECCHHH---HHH---HHHhCCCc-EEEEEECCCHHHHHHHHHHcCCC------------------
Confidence 667777888999999975322 122 22223333 45555556677999999988643
Q ss_pred CHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 152 TWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 152 ~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
..+.+.++++.+.....+. ...+.+|.+ + +.+++.+++.+.+.
T Consensus 137 ~~~~i~~rl~~~~~~~~~~--~~~d~~i~n-~--~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 137 SEEVIERRLAKAKKEIAHA--DEFDYVIVN-D--DLEKAVEELKSIIL 179 (180)
T ss_pred CHHHHHHHHHHHHHHHhcc--ccCcEEEEC-C--CHHHHHHHHHHHHh
Confidence 5567888777654322222 225578877 5 58999999988764
No 124
>PRK07933 thymidylate kinase; Validated
Probab=99.37 E-value=4.6e-11 Score=89.31 Aligned_cols=115 Identities=13% Similarity=-0.002 Sum_probs=64.5
Q ss_pred HHHHHhhCCCcEEEeCCCCch--------------HhHHHHHHHHH---hhCCeEEEEEecCCCHHHHHHHHHhcCCCCC
Q 039424 73 IASTQLKLGVSVVVDSPLSRR--------------AHLEKLVKLAG---EMRAGLVIVECKPSDEAEWRRRLEGRGNEGG 135 (203)
Q Consensus 73 ~~~~~l~~~~~vIid~~~~~~--------------~~~~~~~~~~~---~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~ 135 (203)
.+...+..|..||+|...... ....++..+.. ....|.++|+|+.++ +++.+|+..|+...
T Consensus 80 ~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~-e~a~~Ri~~R~~~~- 157 (213)
T PRK07933 80 ELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPV-ELAAERARRRAAQD- 157 (213)
T ss_pred HHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCH-HHHHHHHHhhcccc-
Confidence 466777889999999832111 11222222221 112577899999766 48999999986421
Q ss_pred CCccCCCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 136 CGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
.+... +.. ....+-+.+..+.|..+...+ +....++||++. +++++.++|.+.+
T Consensus 158 ~~~~~-d~~-----E~~~~f~~~v~~~Y~~~~~~~-~~~~~~~ida~~--~~e~v~~~i~~~~ 211 (213)
T PRK07933 158 ADRAR-DAY-----ERDDGLQQRTGAVYAELAAQG-WGGPWLVVDPDV--DPAALAARLAAAL 211 (213)
T ss_pred CCccc-ccc-----cccHHHHHHHHHHHHHHHHhc-CCCCeEEeCCCC--CHHHHHHHHHHHh
Confidence 00000 000 012233333444444332221 123568899988 9999999998865
No 125
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=99.34 E-value=4.4e-12 Score=88.16 Aligned_cols=95 Identities=18% Similarity=0.224 Sum_probs=68.9
Q ss_pred HHHHHhhCCCcEEEeCCCC-chHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCC
Q 039424 73 IASTQLKLGVSVVVDSPLS-RRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPS 151 (203)
Q Consensus 73 ~~~~~l~~~~~vIid~~~~-~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 151 (203)
.+...+..|..||+.++.. .++.+..|. ...+|.+.+++ +++.+|+..|++.
T Consensus 86 eId~wl~~G~vvl~NgSRa~Lp~arrry~--------~Llvv~ita~p-~VLaqRL~~RGRE------------------ 138 (192)
T COG3709 86 EIDLWLAAGDVVLVNGSRAVLPQARRRYP--------QLLVVCITASP-EVLAQRLAERGRE------------------ 138 (192)
T ss_pred hHHHHHhCCCEEEEeccHhhhHHHHHhhh--------cceeEEEecCH-HHHHHHHHHhccC------------------
Confidence 5567789999999998532 223333322 23577777776 4999999999875
Q ss_pred CHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 152 TWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 152 ~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
+.|++.+|+..... +........+|||++ .++...++++..+.
T Consensus 139 s~eeI~aRL~R~a~---~~~~~~dv~~idNsG--~l~~ag~~ll~~l~ 181 (192)
T COG3709 139 SREEILARLARAAR---YTAGPGDVTTIDNSG--ELEDAGERLLALLH 181 (192)
T ss_pred CHHHHHHHHHhhcc---cccCCCCeEEEcCCC--cHHHHHHHHHHHHH
Confidence 67888888876432 222344779999999 99999999988876
No 126
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=99.34 E-value=3.1e-11 Score=88.98 Aligned_cols=25 Identities=40% Similarity=0.638 Sum_probs=21.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI 25 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i 25 (203)
|.|++||||||+++.|++.+++.++
T Consensus 4 ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 4 VEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred EECCCCCCHHHHHHHHHHHhCCccc
Confidence 5799999999999999988876554
No 127
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.34 E-value=3e-12 Score=93.70 Aligned_cols=167 Identities=16% Similarity=0.162 Sum_probs=93.2
Q ss_pred CCCCCCCChHHHHHHHHHhC--CCceechhhHhhhhhhhhhhhhccCCCccc--cchHHHHHh------hhhhhhhHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL--KIPLIDKDDVRDCTLSLQQTLQKTTPHHQH--ATSAAAAAS------SLLNDLSYDVI 70 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~--~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~~~~~~~~~~l 70 (203)
|.||+||||+|+++.|.+.+ ++.++-....+....+... +...... ......... .......|...
T Consensus 7 l~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~----g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt~ 82 (184)
T smart00072 7 LSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVN----GVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGTS 82 (184)
T ss_pred EECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcC----CceEEECCHHHHHHHHHcCCeEEEEEEcCcCcccC
Confidence 57999999999999999886 3333332222111000000 0000000 000000000 00111234444
Q ss_pred HHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCC
Q 039424 71 WKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKP 150 (203)
Q Consensus 71 ~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 150 (203)
.+.+...+..|..+|+|.... ....+++. ...+++|++.+++.+++.+|+..|+..
T Consensus 83 ~~~i~~~~~~~~~~ild~~~~---~~~~l~~~----~~~~~vIfi~~~s~~~l~~rl~~R~~~----------------- 138 (184)
T smart00072 83 KETIRQVAEQGKHCLLDIDPQ---GVKQLRKA----QLYPIVIFIAPPSSEELERRLRGRGTE----------------- 138 (184)
T ss_pred HHHHHHHHHcCCeEEEEECHH---HHHHHHHh----CCCcEEEEEeCcCHHHHHHHHHhcCCC-----------------
Confidence 556677778899999998532 22333322 344568888877777899999988643
Q ss_pred CCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 151 STWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 151 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+.+.+|++........+ ..-+.+|.+.. +++..++|.+.|...
T Consensus 139 -~~~~i~~rl~~a~~~~~~~--~~fd~~I~n~~---l~~~~~~l~~~i~~~ 183 (184)
T smart00072 139 -TAERIQKRLAAAQKEAQEY--HLFDYVIVNDD---LEDAYEELKEILEAE 183 (184)
T ss_pred -CHHHHHHHHHHHHHHHhhh--ccCCEEEECcC---HHHHHHHHHHHHHhc
Confidence 5677777777543222222 12346777755 888999999888653
No 128
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=99.33 E-value=2.3e-11 Score=92.89 Aligned_cols=145 Identities=21% Similarity=0.186 Sum_probs=85.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHH--h
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQ--L 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--l 78 (203)
|+|.+||||||..+.|. .+||..||.=... . ...+.+..... -
T Consensus 6 iTGlSGaGKs~Al~~lE-D~Gy~cvDNlP~~---------------------------------L-l~~l~~~~~~~~~~ 50 (284)
T PF03668_consen 6 ITGLSGAGKSTALRALE-DLGYYCVDNLPPS---------------------------------L-LPQLIELLAQSNSK 50 (284)
T ss_pred EeCCCcCCHHHHHHHHH-hcCeeEEcCCcHH---------------------------------H-HHHHHHHHHhcCCC
Confidence 68999999999999996 7898888742220 0 01111111111 1
Q ss_pred hCCCcEEEeCCCC--chHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHH-hcCCCCCCCccCCCCCCCCCCCCCHHH
Q 039424 79 KLGVSVVVDSPLS--RRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLE-GRGNEGGCGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 79 ~~~~~vIid~~~~--~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~-~R~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (203)
.....+++|.... .....+.+.. ....+..+.+|||+|+++ ++.+|.. .|+.||-.+ .....+.
T Consensus 51 ~~~~Ai~iD~R~~~~~~~~~~~~~~-l~~~~~~~~ilFLdA~d~-~LirRy~eTRR~HPL~~-----------~~~~le~ 117 (284)
T PF03668_consen 51 IEKVAIVIDIRSREFFEDLFEALDE-LRKKGIDVRILFLDASDE-VLIRRYSETRRRHPLSS-----------DGSLLEA 117 (284)
T ss_pred CceEEEEEeCCChHHHHHHHHHHHH-HHhcCCceEEEEEECChH-HHHHHHHhccCCCCCCC-----------CCCcHHH
Confidence 2244588887321 1122222222 344488999999998775 7888875 687776110 0112233
Q ss_pred HHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 156 LERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
|.+-.+.- .... ..++++||||+ +++.++.+.|.+.+.
T Consensus 118 I~~Er~~L---~~lr--~~Ad~vIDTs~-l~~~~Lr~~i~~~~~ 155 (284)
T PF03668_consen 118 IEKERELL---EPLR--ERADLVIDTSN-LSVHQLRERIRERFG 155 (284)
T ss_pred HHHHHHHH---HHHH--HhCCEEEECCC-CCHHHHHHHHHHHhc
Confidence 33211111 1111 12669999999 999999999998875
No 129
>PRK13976 thymidylate kinase; Provisional
Probab=99.32 E-value=7.6e-11 Score=87.74 Aligned_cols=171 Identities=12% Similarity=0.096 Sum_probs=90.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCC-----ceech----hh-HhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKI-----PLIDK----DD-VRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVI 70 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~-----~~i~~----d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 70 (203)
|.|+.||||||+++.|++.|.- .++-+ +. +.+.+ ...+. .+... . .....-.+.....+.+
T Consensus 5 ~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~i---r~~l~--~~~~~--~--~~~~~llf~a~R~~~~ 75 (209)
T PRK13976 5 FEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELV---RGLLL--SLKNL--D--KISELLLFIAMRREHF 75 (209)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHH---HHHHc--CCcCC--C--HHHHHHHHHHHHHHHH
Confidence 5799999999999999988732 22211 11 11111 11100 00000 0 0000001111122334
Q ss_pred HHHHHHHhhCCCcEEEeCCCCc------------hHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCc
Q 039424 71 WKIASTQLKLGVSVVVDSPLSR------------RAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGV 138 (203)
Q Consensus 71 ~~~~~~~l~~~~~vIid~~~~~------------~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~ 138 (203)
.+.+...+..|..||+|..... ..+...+..... ...|.++|+|+++++ ++.+|+..|+..
T Consensus 76 ~~~I~p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~-~~~PDl~i~Ldv~~e-~a~~Ri~~~~~e----- 148 (209)
T PRK13976 76 VKVILPALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVV-DKYPDITFVLDIDIE-LSLSRADKNGYE----- 148 (209)
T ss_pred HHHHHHHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhh-CCCCCEEEEEeCCHH-HHHHHhcccchh-----
Confidence 5567778889999999983111 123344333332 235778999998765 899998543211
Q ss_pred cCCCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCC-CCC---hHHHHHHHHHHHhc
Q 039424 139 VGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTA-SVG---FQELVSNVIEFILH 200 (203)
Q Consensus 139 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~---~~e~~~~i~~~i~~ 200 (203)
....+-+.+..+.|..+...+. ...+.||++. ..+ ++++.++|.+.+..
T Consensus 149 -----------~~~~~~l~~v~~~Y~~l~~~~~--~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~ 201 (209)
T PRK13976 149 -----------FMDLEFYDKVRKGFREIVIKNP--HRCHVITCIDAKDNIEDINSVHLEIVKLLHA 201 (209)
T ss_pred -----------cccHHHHHHHHHHHHHHHHhCC--CCeEEEECCCCccCcCCHHHHHHHHHHHHHH
Confidence 1234444455555544332221 2457788832 015 99999999988764
No 130
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=99.30 E-value=3.9e-11 Score=89.31 Aligned_cols=123 Identities=18% Similarity=0.230 Sum_probs=76.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc-eechhhHhhhhhhhhh-h------------hhc-cCCCccccchHHHHHhhhhh--
Q 039424 1 MKGHPGTGKSTLADAIASALKIP-LIDKDDVRDCTLSLQQ-T------------LQK-TTPHHQHATSAAAAASSLLN-- 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~-~i~~d~~~~~~~~~~~-~------------~~~-~~~~~~~~~~~~~~~~~~~~-- 63 (203)
|-|+||+||||+|..||.++|+. ++++|.+++.+.++-. . +.. ..+... ..+..++.+
T Consensus 94 IGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~-----~piiaGF~dqa 168 (299)
T COG2074 94 IGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDE-----NPIIAGFEDQA 168 (299)
T ss_pred ecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCC-----cchhhhHHHHh
Confidence 46899999999999999999987 7899988877554211 0 000 011111 011122221
Q ss_pred hhhHHHHHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCC
Q 039424 64 DLSYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE 133 (203)
Q Consensus 64 ~~~~~~l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~ 133 (203)
......+...+...+.+|.++|+.|....+...+. ..- +..+..+++..++++..+.|+..|.+.
T Consensus 169 ~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~---~~~--~~n~~~~~l~i~dee~Hr~RF~~R~~~ 233 (299)
T COG2074 169 SAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKE---EAL--GNNVFMFMLYIADEELHRERFYDRIRY 233 (299)
T ss_pred HHHHHHHHHHHHHHHhcCcceEEEeeeeccccccH---hhh--ccceEEEEEEeCCHHHHHHHHHHHHHH
Confidence 12334456677788899999999995544444332 111 222344555557888999999998765
No 131
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.27 E-value=2.8e-12 Score=87.43 Aligned_cols=31 Identities=48% Similarity=0.808 Sum_probs=29.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~ 31 (203)
|+|+|||||||+|+.|++++|++++++|+++
T Consensus 4 I~G~~gsGKST~a~~La~~~~~~~i~~d~~~ 34 (121)
T PF13207_consen 4 ISGPPGSGKSTLAKELAERLGFPVISMDDLI 34 (121)
T ss_dssp EEESTTSSHHHHHHHHHHHHTCEEEEEHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHCCeEEEecceE
Confidence 5799999999999999999999999999963
No 132
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.24 E-value=1.1e-10 Score=87.08 Aligned_cols=32 Identities=34% Similarity=0.558 Sum_probs=27.2
Q ss_pred CCCCCCCChHHHHHHHHHhCC---CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASALK---IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~---~~~i~~d~~~~ 32 (203)
|+|++||||||+++.|++.++ +.+++.|+++.
T Consensus 11 I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~ 45 (209)
T PRK05480 11 IAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYK 45 (209)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCceEEEeCCcccc
Confidence 579999999999999999983 55788888754
No 133
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.23 E-value=3.6e-10 Score=87.61 Aligned_cols=124 Identities=21% Similarity=0.269 Sum_probs=77.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc-eechhhHhhhhhh---hhh--h--------hhcc--CCCccccchHHHHHhhhhh-
Q 039424 1 MKGHPGTGKSTLADAIASALKIP-LIDKDDVRDCTLS---LQQ--T--------LQKT--TPHHQHATSAAAAASSLLN- 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~-~i~~d~~~~~~~~---~~~--~--------~~~~--~~~~~~~~~~~~~~~~~~~- 63 (203)
|.|++||||||+|..|+++||+. ++++|.+++.+.. .+. . +... .|... .....++..
T Consensus 97 I~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~-----~~~l~g~~~~ 171 (301)
T PRK04220 97 IGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPE-----PPVIYGFERH 171 (301)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCc-----hhhhhhHHHH
Confidence 57999999999999999999987 7999988865442 110 0 1000 01100 001111111
Q ss_pred -hhhHHHHHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCC
Q 039424 64 -DLSYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE 133 (203)
Q Consensus 64 -~~~~~~l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~ 133 (203)
+.....+...+...+.+|.++|+.|....+.+.+.+.. . ....+.++|..++++..++|...|...
T Consensus 172 ~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~~---~-~~~~i~~~l~i~~ee~h~~RF~~R~~~ 238 (301)
T PRK04220 172 VEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKYL---E-NPNVFMFVLTLSDEEAHKARFYARARV 238 (301)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhhh---c-CCCEEEEEEEECCHHHHHHHHHHHHhh
Confidence 12333456677777889999999998777776554221 1 122344555557778999999988765
No 134
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=99.23 E-value=7.1e-10 Score=76.97 Aligned_cols=169 Identities=20% Similarity=0.129 Sum_probs=99.1
Q ss_pred CCCCCCCChHHHHHHHHHhCC--CceechhhHhhhhhhhhhhhhcc--CCCccccchH--HHHHhhhhhhhhHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK--IPLIDKDDVRDCTLSLQQTLQKT--TPHHQHATSA--AAAASSLLNDLSYDVIWKIA 74 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~--~~~i~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~ 74 (203)
++|.|.||||++|..+.+-+. |-+|-.|.+.+.+.+-+...+.+ -+.+...+.. ..+..+.+.+.........+
T Consensus 28 LNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~~~~~~r~ai 107 (205)
T COG3896 28 LNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILELAMHSRRRAI 107 (205)
T ss_pred ecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHHHHHHHHHHH
Confidence 589999999999999987774 56777888888776543322211 1110100000 00001111122223333345
Q ss_pred HHHhhCCCcEEEeCCCCc-hHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCC-CCCCccCCCCCCCCCCCCC
Q 039424 75 STQLKLGVSVVVDSPLSR-RAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE-GGCGVVGDDRPSSWHKPST 152 (203)
Q Consensus 75 ~~~l~~~~~vIid~~~~~-~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~-~~~~~~~~~~~~~~~~~~~ 152 (203)
...+.+|-++|.|...-. .+..+.++.+. |+++.+|-+.||++ +..+|-..|+.. + -++ .
T Consensus 108 ~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l~---g~~v~~VGV~~p~E-~~~~Re~rr~dR~p----G~~----------r 169 (205)
T COG3896 108 RAYADNGMNVIADDVIWTREWLVDCLRVLE---GCRVWMVGVHVPDE-EGARRELRRGDRHP----GWN----------R 169 (205)
T ss_pred HHHhccCcceeehhcccchhhHHHHHHHHh---CCceEEEEeeccHH-HHHHHHhhcCCcCc----chh----------h
Confidence 555678889999995444 44455555444 89999999999876 555554445432 2 000 1
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 153 WRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 153 ~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
. -.+. .......++.+||+. +++.|.+..|.+.++
T Consensus 170 g--~~r~---------vHa~~~YDlevDTS~-~tp~EcAr~i~~r~q 204 (205)
T COG3896 170 G--SARA---------VHADAEYDLEVDTSA-TTPHECAREIHERYQ 204 (205)
T ss_pred h--hHHH---------hcCCcceeeeecccC-CCHHHHHHHHHHHhc
Confidence 1 1111 112233569999999 899999999998765
No 135
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=99.22 E-value=9.7e-10 Score=77.24 Aligned_cols=99 Identities=16% Similarity=0.167 Sum_probs=67.4
Q ss_pred CCCCCCChHHHHHHHHHhCC-CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh--
Q 039424 2 KGHPGTGKSTLADAIASALK-IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL-- 78 (203)
Q Consensus 2 ~G~pGsGKST~a~~L~~~~~-~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l-- 78 (203)
++.+|+||||+|..|++-|| |.|+.+|++... . ...+.+.+.+.|
T Consensus 5 IAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k-~-------------------------------~~~f~~~~l~~L~~ 52 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGEWGHVQNDNITGK-R-------------------------------KPKFIKAVLELLAK 52 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCCCCccccCCCCCC-C-------------------------------HHHHHHHHHHHHhh
Confidence 47899999999999999999 999999999432 1 011223333445
Q ss_pred hCCCcEEEeCCCCchHhHHHHHHHHHhhCC-------eEEEEEecCCC---H----HHHHHHHHhcCC
Q 039424 79 KLGVSVVVDSPLSRRAHLEKLVKLAGEMRA-------GLVIVECKPSD---E----AEWRRRLEGRGN 132 (203)
Q Consensus 79 ~~~~~vIid~~~~~~~~~~~~~~~~~~~~~-------~~~~v~l~~~~---~----e~~~~R~~~R~~ 132 (203)
.....||+|..+.....|+++......... .+.+|.|.... . .++..|+.+|+.
T Consensus 53 ~~~~vViaDRNNh~~reR~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGD 120 (168)
T PF08303_consen 53 DTHPVVIADRNNHQKRERKQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGD 120 (168)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCc
Confidence 557789999998888888877765554332 33333333222 1 378889999974
No 136
>PRK06547 hypothetical protein; Provisional
Probab=99.21 E-value=5.2e-11 Score=85.97 Aligned_cols=118 Identities=21% Similarity=0.193 Sum_probs=64.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhh--HHHHHHHHH--H
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLS--YDVIWKIAS--T 76 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~--~ 76 (203)
|+|+|||||||+|+.|++.++++++++|+++.....+.... . .. ............ ++....... .
T Consensus 20 i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~~~~----~-----~l-~~~~l~~g~~~~~~yd~~~~~~~~~~ 89 (172)
T PRK06547 20 IDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAAAS----E-----HV-AEAVLDEGRPGRWRWDWANNRPGDWV 89 (172)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCeecccceecccccCChHH----H-----HH-HHHHHhCCCCceecCCCCCCCCCCcE
Confidence 57999999999999999999999999999875422111000 0 00 000000000000 000000000 0
Q ss_pred HhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCC
Q 039424 77 QLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE 133 (203)
Q Consensus 77 ~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~ 133 (203)
.+..+..+|++|..... +.++.+... +..+..|++.++. +++.+|+..|..+
T Consensus 90 ~l~~~~vVIvEG~~al~---~~~r~~~d~-~g~v~~I~ld~~~-~vr~~R~~~Rd~~ 141 (172)
T PRK06547 90 SVEPGRRLIIEGVGSLT---AANVALASL-LGEVLTVWLDGPE-ALRKERALARDPD 141 (172)
T ss_pred EeCCCCeEEEEehhhcc---HHHHHHhcc-CCCEEEEEEECCH-HHHHHHHHhcCch
Confidence 12235568899964332 223333433 3345689999765 5899999999643
No 137
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=99.15 E-value=5.1e-10 Score=78.46 Aligned_cols=171 Identities=17% Similarity=0.177 Sum_probs=89.1
Q ss_pred CCCCCCCChHHHHHHHHHhC-CCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASAL-KIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 79 (203)
++|.||+||||+++.+.+.+ ....++-+++.-...... +-.... ... . .+.......++..+...+.
T Consensus 9 itGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~k~-----glve~r-----D~~-R-klp~e~Q~~lq~~Aa~rI~ 76 (189)
T COG2019 9 ITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAKKK-----GLVEHR-----DEM-R-KLPLENQRELQAEAAKRIA 76 (189)
T ss_pred EEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHHHh-----CCcccH-----HHH-h-cCCHHHHHHHHHHHHHHHH
Confidence 58999999999999999998 888899998843322110 011000 111 1 1111222334444444433
Q ss_pred C-CCcEEEeCCCCch---HhHHHHHH-HHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHH
Q 039424 80 L-GVSVVVDSPLSRR---AHLEKLVK-LAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWR 154 (203)
Q Consensus 80 ~-~~~vIid~~~~~~---~~~~~~~~-~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e 154 (203)
. ...+|+|+...-. -++.-+-. .....+ |..+|.+.++|++.+.||+..-.+.. ...+.+
T Consensus 77 ~~~~~iivDtH~~IkTP~GylpgLP~~Vl~~l~-pd~ivllEaDp~~Il~RR~~D~~r~R--------------d~es~e 141 (189)
T COG2019 77 EMALEIIVDTHATIKTPAGYLPGLPSWVLEELN-PDVIVLLEADPEEILERRLRDSRRDR--------------DVESVE 141 (189)
T ss_pred HhhhceEEeccceecCCCccCCCCcHHHHHhcC-CCEEEEEeCCHHHHHHHHhccccccc--------------ccccHH
Confidence 3 3338999831111 01111100 122223 44577778888889999988622211 224556
Q ss_pred HHHHHhhhhcC--C-CCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 155 DLERLLEGYCG--C-TEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 155 ~~~~~~~~~~~--~-~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
++.+.++--+. + ......+ ...+|.+.. ..+++.+.+|...|..
T Consensus 142 ~i~eHqe~nR~aA~a~A~~~ga-tVkIV~n~~-~~~e~Aa~eiv~~l~~ 188 (189)
T COG2019 142 EIREHQEMNRAAAMAYAILLGA-TVKIVENHE-GDPEEAAEEIVELLDR 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-eEEEEeCCC-CCHHHHHHHHHHHHhc
Confidence 66554332110 0 0111122 334555554 4999999999988764
No 138
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.15 E-value=1.6e-09 Score=79.00 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=22.6
Q ss_pred CCeEEEEEecCCCHHHHHHHHHhcCCC
Q 039424 107 RAGLVIVECKPSDEAEWRRRLEGRGNE 133 (203)
Q Consensus 107 ~~~~~~v~l~~~~~e~~~~R~~~R~~~ 133 (203)
+.|..+|+|+|+.+ ++.+|+..|++.
T Consensus 125 ~~PdllIyLd~~~e-~~l~RI~~RgR~ 150 (216)
T COG1428 125 GRPDLLIYLDASLE-TLLRRIAKRGRP 150 (216)
T ss_pred CCCCEEEEEeCCHH-HHHHHHHHhCCC
Confidence 47888999999875 899999999876
No 139
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.15 E-value=1e-10 Score=85.49 Aligned_cols=101 Identities=21% Similarity=0.210 Sum_probs=65.8
Q ss_pred HHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCC
Q 039424 70 IWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHK 149 (203)
Q Consensus 70 l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 149 (203)
....+...+.+|..+|+|... .....++. .+..+++|++.++..+.+.+|+..|+..
T Consensus 82 ~~~~i~~~~~~gk~~il~~~~---~g~~~L~~----~~~~~~~IfI~~~s~~~l~~~l~~r~~~---------------- 138 (183)
T PF00625_consen 82 SKSAIDKVLEEGKHCILDVDP---EGVKQLKK----AGFNPIVIFIKPPSPEVLKRRLRRRGDE---------------- 138 (183)
T ss_dssp EHHHHHHHHHTTTEEEEEETH---HHHHHHHH----CTTTEEEEEEEESSHHHHHHHHHTTTHC----------------
T ss_pred ccchhhHhhhcCCcEEEEccH---HHHHHHHh----cccCceEEEEEccchHHHHHHHhccccc----------------
Confidence 345667778889999999752 23333222 2556678888877778899998877532
Q ss_pred CCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 150 PSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 150 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+.+.+++.........+.. -+.+|.+ + ++++++.+|.+.|+.
T Consensus 139 --~~~~i~~r~~~~~~~~~~~~~--fd~vi~n-~--~le~~~~~l~~ii~~ 182 (183)
T PF00625_consen 139 --SEEEIEERLERAEKEFEHYNE--FDYVIVN-D--DLEEAVKELKEIIEQ 182 (183)
T ss_dssp --HHHHHHHHHHHHHHHHGGGGG--SSEEEEC-S--SHHHHHHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHHhHhhc--CCEEEEC-c--CHHHHHHHHHHHHHh
Confidence 456677776654322222211 3366665 4 699999999998875
No 140
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=99.12 E-value=8.1e-10 Score=80.98 Aligned_cols=162 Identities=20% Similarity=0.179 Sum_probs=105.8
Q ss_pred CCCCCCCChHHHHHHHHHhCC------CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhh-hhhhhHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK------IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSL-LNDLSYDVIWKI 73 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~------~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~ 73 (203)
|||.|.|||||.|+.|.+.|. ...|..|.- .+++.. . .|... -+......+...
T Consensus 6 i~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des----lg~~~n-----s----------~y~~s~~EK~lRg~L~S~ 66 (281)
T KOG3062|consen 6 ICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES----LGIEKN-----S----------NYGDSQAEKALRGKLRSA 66 (281)
T ss_pred EeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh----cCCCCc-----c----------cccccHHHHHHHHHHHHH
Confidence 689999999999999998772 122322222 111110 0 01111 112334556677
Q ss_pred HHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCH
Q 039424 74 ASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTW 153 (203)
Q Consensus 74 ~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~ 153 (203)
+...++.+..||+|.-+.-..++-++..+++..+.-..+|+..+| .+.+++...+|.... ..+-+.
T Consensus 67 v~R~Lsk~~iVI~DslNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp-~e~~r~~Ns~~~~p~-------------e~gy~~ 132 (281)
T KOG3062|consen 67 VDRSLSKGDIVIVDSLNYIKGFRYELYCEAKAARTTYCVVHTAVP-QELCREWNSEREDPG-------------EDGYDD 132 (281)
T ss_pred HHhhcccCcEEEEecccccccceeeeeeehhccceeEEEEEecCC-HHHHHHhcccCCCCC-------------CCCCCH
Confidence 888899999999999766667777777778877887888888764 568999987775442 123466
Q ss_pred HHHHHHhhhhcCCCCCCCCCCCeEEEecCCC-CChHHHHHHHH
Q 039424 154 RDLERLLEGYCGCTEYDVGDVPKLTVDTTAS-VGFQELVSNVI 195 (203)
Q Consensus 154 e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~e~~~~i~ 195 (203)
+.+...+..|+.....-+|..+.+++=.... .+.+.++..+.
T Consensus 133 e~le~L~~RyEeP~s~NRWDsPLf~ll~~~~~~~~~~I~~al~ 175 (281)
T KOG3062|consen 133 ELLEALVQRYEEPNSRNRWDSPLFTLLPDVITLPIDDILKALF 175 (281)
T ss_pred HHHHHHHHHhhCCCccccccCcceEEecccCCCcHHHHHHHHh
Confidence 7788888888777777777666666654321 46777666554
No 141
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.08 E-value=5.8e-10 Score=81.37 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=29.7
Q ss_pred CCCCCCCChHHHHHHHHHhC-CCceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL-KIPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-~~~~i~~d~~~~~ 33 (203)
|+|+|||||||+|+.|++.+ ++.+|++|+++..
T Consensus 4 i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~ 37 (187)
T cd02024 4 ISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKP 37 (187)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCeEEccccccCC
Confidence 57999999999999999998 6889999999653
No 142
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=99.03 E-value=5.5e-09 Score=78.30 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=82.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH--HHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS--TQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~l 78 (203)
|+|.+||||||..+.|. .+||-.+|.=.. .....+.+.+. +.-
T Consensus 6 VTGlSGAGKsvAl~~lE-DlGyycvDNLPp----------------------------------~Llp~~~~~~~~~~~~ 50 (286)
T COG1660 6 VTGLSGAGKSVALRVLE-DLGYYCVDNLPP----------------------------------QLLPKLADLMLTLESR 50 (286)
T ss_pred EecCCCCcHHHHHHHHH-hcCeeeecCCCH----------------------------------HHHHHHHHHHhhcccC
Confidence 58999999999999996 789877763211 00011122111 111
Q ss_pred hCCCcEEEeCCCC-chHhHHHHHHHHHhh-CCeEEEEEecCCCHHHHHHHHH-hcCCCCCCCccCCCCCCCCCCCCCHHH
Q 039424 79 KLGVSVVVDSPLS-RRAHLEKLVKLAGEM-RAGLVIVECKPSDEAEWRRRLE-GRGNEGGCGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 79 ~~~~~vIid~~~~-~~~~~~~~~~~~~~~-~~~~~~v~l~~~~~e~~~~R~~-~R~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (203)
.....|++|-... .......+....+.. ++.+.+++|.++++ ++.+|.. .|+.||-++ .+. -.+.
T Consensus 51 ~~kvAv~iDiRs~~~~~~l~~~l~~l~~~~~~~~~iLFLeA~~~-~Lv~RY~etRR~HPL~~--------~~~---l~~~ 118 (286)
T COG1660 51 ITKVAVVIDVRSREFFGDLEEVLDELKDNGDIDPRVLFLEADDE-TLVRRYSETRRSHPLSE--------DGL---LLEA 118 (286)
T ss_pred CceEEEEEecccchhHHHHHHHHHHHHhcCCCCceEEEEECchh-HHHHHHhhhhhcCCCCc--------cCc---HHHH
Confidence 2344588887322 112223333333434 35688999998765 7888875 677776110 000 1111
Q ss_pred HHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 156 LERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
|.. .++-+.... ..+.++||||. +++-++.+.|...+.
T Consensus 119 I~~---ERelL~pLk--~~A~~vIDTs~-ls~~~Lr~~i~~~f~ 156 (286)
T COG1660 119 IAK---ERELLAPLR--EIADLVIDTSE-LSVHELRERIRTRFL 156 (286)
T ss_pred HHH---HHHHHHHHH--HHhhhEeeccc-CCHHHHHHHHHHHHc
Confidence 111 111111111 22558999999 999999999999886
No 143
>PRK06696 uridine kinase; Validated
Probab=99.03 E-value=8.4e-11 Score=88.64 Aligned_cols=33 Identities=30% Similarity=0.499 Sum_probs=27.0
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCc--eechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIP--LIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~--~i~~d~~~~~ 33 (203)
|.|+|||||||+|+.|++.+ |.+ ++++|+++..
T Consensus 27 I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 27 IDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 57999999999999999998 544 4568888643
No 144
>PRK07667 uridine kinase; Provisional
Probab=99.02 E-value=1.3e-09 Score=80.35 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=27.1
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~~~ 32 (203)
|+|+|||||||+|+.|++.++ ..+++.|++..
T Consensus 22 I~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~ 58 (193)
T PRK07667 22 IDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIV 58 (193)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccc
Confidence 579999999999999998763 45899998754
No 145
>PLN02772 guanylate kinase
Probab=99.02 E-value=1.9e-09 Score=86.27 Aligned_cols=107 Identities=13% Similarity=0.152 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCC
Q 039424 66 SYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPS 145 (203)
Q Consensus 66 ~~~~l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~ 145 (203)
.|....+.+...+++|..+|+|-... ....+++.. ...++|++.+++.+++.+|+..|+..
T Consensus 211 ~YGTsk~~V~~vl~~Gk~vILdLD~q---Gar~Lr~~~----l~~v~IFI~PPSlEeLe~RL~~RGte------------ 271 (398)
T PLN02772 211 LYGTSIEAVEVVTDSGKRCILDIDVQ---GARSVRASS----LEAIFIFICPPSMEELEKRLRARGTE------------ 271 (398)
T ss_pred cccccHHHHHHHHHhCCcEEEeCCHH---HHHHHHHhc----CCeEEEEEeCCCHHHHHHHHHhcCCC------------
Confidence 45555667777889999999997332 222322221 23355666556667999999999654
Q ss_pred CCCCCCCHHHHHHHhhhhcC-CCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 146 SWHKPSTWRDLERLLEGYCG-CTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 146 ~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+.+++|++.+.. +.........+.+|.++ ++++..+++.+.|..
T Consensus 272 ------seE~I~kRL~~A~~Ei~~~~~~~~fD~vIvND---dLe~A~~~L~~iL~~ 318 (398)
T PLN02772 272 ------TEEQIQKRLRNAEAELEQGKSSGIFDHILYND---NLEECYKNLKKLLGL 318 (398)
T ss_pred ------CHHHHHHHHHHHHHHHhhccccCCCCEEEECC---CHHHHHHHHHHHHhh
Confidence 56788888877632 22111111234566665 499999999988764
No 146
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.01 E-value=6.4e-09 Score=76.98 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=28.2
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~~i~~d~~~~~ 33 (203)
|+|++||||||+++.|+..+ +..+++.|+++..
T Consensus 4 i~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~ 39 (198)
T cd02023 4 IAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKD 39 (198)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccc
Confidence 57999999999999999887 3678999987644
No 147
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=99.00 E-value=4.1e-10 Score=77.24 Aligned_cols=45 Identities=27% Similarity=0.320 Sum_probs=28.1
Q ss_pred hhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEE-EEecCCCHHHHHHHHHhcCCC
Q 039424 78 LKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVI-VECKPSDEAEWRRRLEGRGNE 133 (203)
Q Consensus 78 l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~-v~l~~~~~e~~~~R~~~R~~~ 133 (203)
...+..+|+|+....... ....... |+|.|++ +++.+|+..|...
T Consensus 70 ~~~~~~~iid~~~~~~~~----------~~~~~~~~i~L~~~~-e~~~~R~~~R~~~ 115 (129)
T PF13238_consen 70 MNKGRNIIIDGILSNLEL----------ERLFDIKFIFLDCSP-EELRKRLKKRGRK 115 (129)
T ss_dssp HTTTSCEEEEESSEEECE----------TTEEEESSEEEE--H-HHHHHHHHCTTTS
T ss_pred cccCCcEEEecccchhcc----------cccceeeEEEEECCH-HHHHHHHHhCCCC
Confidence 455778999996543211 0111123 8888877 5899999999776
No 148
>PTZ00301 uridine kinase; Provisional
Probab=98.96 E-value=9.6e-09 Score=76.48 Aligned_cols=32 Identities=38% Similarity=0.497 Sum_probs=25.4
Q ss_pred CCCCCCCChHHHHHHHHHhC----C---CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASAL----K---IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~---~~~i~~d~~~~ 32 (203)
|.|+|||||||+|+.|++++ + +.+++.|.++.
T Consensus 8 IaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~ 46 (210)
T PTZ00301 8 ISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred EECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence 57999999999999998765 2 34678888754
No 149
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.95 E-value=1.2e-08 Score=75.34 Aligned_cols=33 Identities=30% Similarity=0.523 Sum_probs=29.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc---eechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIP---LIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~---~i~~d~~~~~ 33 (203)
|.|++||||||+|+.|++.|+.. +|+.|+++..
T Consensus 13 IaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~ 48 (218)
T COG0572 13 IAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKD 48 (218)
T ss_pred EeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccc
Confidence 57999999999999999999844 8999999764
No 150
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.94 E-value=2.2e-08 Score=74.62 Aligned_cols=31 Identities=35% Similarity=0.561 Sum_probs=26.4
Q ss_pred CCCCCCCChHHHHHHHHHhCC---CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASALK---IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~---~~~i~~d~~~ 31 (203)
|+|++||||||+++.|+..++ +.+++.|..+
T Consensus 11 I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~ 44 (207)
T TIGR00235 11 IGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYY 44 (207)
T ss_pred EECCCCCCHHHHHHHHHHHhcccCCeEecccccc
Confidence 579999999999999998875 5678888764
No 151
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.93 E-value=4.1e-09 Score=73.42 Aligned_cols=149 Identities=17% Similarity=0.130 Sum_probs=93.7
Q ss_pred CCCCCCCChHHHHHHHHHhC--CCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASAL--KIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~--~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 78 (203)
+.|+.||||||+...+-..+ +..++++|.+..++.+. .|. ...+ .+-+.....+...+
T Consensus 7 vaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~-------~p~-----------~~~i--~A~r~ai~~i~~~I 66 (187)
T COG4185 7 VAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPD-------NPT-----------SAAI--QAARVAIDRIARLI 66 (187)
T ss_pred EecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCC-------Cch-----------HHHH--HHHHHHHHHHHHHH
Confidence 46999999999976664444 57899999997654321 110 0011 23344555666778
Q ss_pred hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHH
Q 039424 79 KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLER 158 (203)
Q Consensus 79 ~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 158 (203)
..+.++..+.++.....++.++ .++..|+-+...|+-.+..|...+|+..|-..+ +| +-.++.+++
T Consensus 67 ~~~~~F~~ETtLS~~s~~~~ik-~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~G------------GH-~IpED~Ir~ 132 (187)
T COG4185 67 DLGRPFIAETTLSGPSILELIK-TAKAAGFYIVLNYIVIDSVELAVERVKLRVAKG------------GH-DIPEDKIRR 132 (187)
T ss_pred HcCCCcceEEeeccchHHHHHH-HHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcC------------CC-CCcHHHHHH
Confidence 8899999999888877766554 467777655444443345568999999885442 11 235567777
Q ss_pred HhhhhcC-CCCCCCCCCCeEEEecCC
Q 039424 159 LLEGYCG-CTEYDVGDVPKLTVDTTA 183 (203)
Q Consensus 159 ~~~~~~~-~~~~~~~~~~~~~id~~~ 183 (203)
|...... +..+..-++...+-|+++
T Consensus 133 RY~rsle~l~~~l~l~dr~~IydNS~ 158 (187)
T COG4185 133 RYRRSLELLAQALTLADRATIYDNSR 158 (187)
T ss_pred HHHHHHHHHHHHHhhcceeEEecCCC
Confidence 6654321 223334455667778876
No 152
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=98.91 E-value=1.6e-08 Score=87.52 Aligned_cols=119 Identities=20% Similarity=0.172 Sum_probs=68.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH-----hhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV-----RDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
+.|.||+||||+|+.|++.+++..++++.+ ++.+.. .......+.. ..... .......+.....
T Consensus 220 ~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~--~~~~~~~~~~--------~~~~e-~~~~~~~~~d~~~ 288 (664)
T PTZ00322 220 MVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLER--RGGAVSSPTG--------AAEVE-FRIAKAIAHDMTT 288 (664)
T ss_pred ecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhcc--CCCCcCCCCC--------HHHHH-HHHHHHHHHHHHH
Confidence 579999999999999999987766665544 433321 0011111110 00000 1122222222222
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCC----eEEEEEecCCCHHHHHHHHHhcC
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRA----GLVIVECKPSDEAEWRRRLEGRG 131 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~----~~~~v~l~~~~~e~~~~R~~~R~ 131 (203)
-.+..|.++|+|+.+.....+..+.+...+.+. .+++|.+.|.+.+. .++...|.
T Consensus 289 ~v~~~GgvaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~-i~~ni~r~ 347 (664)
T PTZ00322 289 FICKTDGVAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSET-IRRNVLRA 347 (664)
T ss_pred HHhcCCCEEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHH-HHHHHHHH
Confidence 234457799999988887666555555555554 67888888888754 45554443
No 153
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.87 E-value=2.9e-08 Score=68.58 Aligned_cols=160 Identities=19% Similarity=0.201 Sum_probs=84.6
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|.+||||||+|-.|.+.+ | ...++.|.++.-+. ...+... .-.. ...+.+-+.++
T Consensus 36 iTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN---------~DL~F~a----~dR~-----ENIRRigeVaK 97 (207)
T KOG0635|consen 36 ITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLN---------KDLGFKA----EDRN-----ENIRRIGEVAK 97 (207)
T ss_pred EeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccc---------cccCcch----hhhh-----hhHHHHHHHHH
Confidence 68999999999999998877 3 33688888876543 1111100 0000 11122333333
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHH
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (203)
-....+...|..-.-..+.-++.-+.+.. ..+|+-||+++|. ++|..|-- .+ +|. -.
T Consensus 98 LFADag~iciaSlISPYR~dRdacRel~~--~~~FiEvfmdvpl-~vcE~RDP----KG----LYK------------~A 154 (207)
T KOG0635|consen 98 LFADAGVICIASLISPYRKDRDACRELLP--EGDFIEVFMDVPL-EVCEARDP----KG----LYK------------LA 154 (207)
T ss_pred HHhccceeeeehhcCchhccHHHHHHhcc--CCCeEEEEecCcH-HHhhccCc----hh----HHH------------HH
Confidence 33334433333222222234455444443 3478999999865 57765521 10 000 00
Q ss_pred HHHHhhhhcCCCC-CCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 156 LERLLEGYCGCTE-YDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 156 ~~~~~~~~~~~~~-~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
-.-.++.|..... |+.+-...+++.++..-++++.++.|..++..-
T Consensus 155 RaGkIKgFTGIddPYEaP~~cEi~l~~~~~~sp~~mae~iv~YL~~k 201 (207)
T KOG0635|consen 155 RAGKIKGFTGIDDPYEAPLNCEIVLKSHESSSPEEMAEIIVSYLDNK 201 (207)
T ss_pred hcccccccccCCCcccCCCCcEEEEccCCCCCHHHHHHHHHHHHhhc
Confidence 0013344444433 555544557777665347777999999888654
No 154
>KOG4238 consensus Bifunctional ATP sulfurylase/adenosine 5'-phosphosulfate kinase [Nucleotide transport and metabolism]
Probab=98.81 E-value=1.4e-08 Score=79.59 Aligned_cols=162 Identities=18% Similarity=0.238 Sum_probs=96.3
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCce--echhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIPL--IDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~~--i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
++|.+|+||||++-+|.+.+ |++. ++.|.+++.+. .++.+ +|.+ ++...+.+.+.++
T Consensus 55 ~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~---knlgf-s~ed--------------reenirriaevak 116 (627)
T KOG4238|consen 55 LTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLN---KNLGF-SPED--------------REENIRRIAEVAK 116 (627)
T ss_pred eeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhh---hccCC-Cchh--------------HHHHHHHHHHHHH
Confidence 58999999999999998766 6665 55567765432 11111 1110 0111233334444
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHH
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (203)
-....|..+|..-.....+-+...+++-...+.||.-|+++++. ++|.+|-...-... ..
T Consensus 117 lfadaglvcitsfispf~~dr~~arkihe~~~l~f~ev~v~a~l-~vceqrd~k~lykk----------------ar--- 176 (627)
T KOG4238|consen 117 LFADAGLVCITSFISPFAKDRENARKIHESAGLPFFEVFVDAPL-NVCEQRDVKGLYKK----------------AR--- 176 (627)
T ss_pred HHhcCCceeeehhcChhhhhhhhhhhhhcccCCceEEEEecCch-hhhhhcChHHHHhh----------------hh---
Confidence 44455543433332222244555566777778999999999766 58887743321110 00
Q ss_pred HHHHhhhhcCCC-CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhccC
Q 039424 156 LERLLEGYCGCT-EYDVGDVPKLTVDTTASVGFQELVSNVIEFILHID 202 (203)
Q Consensus 156 ~~~~~~~~~~~~-~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~~ 202 (203)
.-.+..|..+. +|++++.+.+++++.. .+..+.++++++.+++-.
T Consensus 177 -agei~gftgids~ye~pe~~e~vl~t~~-~~v~~cvqqvve~lq~~~ 222 (627)
T KOG4238|consen 177 -AGEIKGFTGIDSDYEKPETPERVLKTNL-STVSDCVQQVVELLQEQN 222 (627)
T ss_pred -ccccccccccccccCCCCChhHHhhcCC-chHHHHHHHHHHHHHhcC
Confidence 01233444443 4677777889999998 699999999999887643
No 155
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.79 E-value=3.4e-08 Score=74.81 Aligned_cols=31 Identities=35% Similarity=0.634 Sum_probs=24.5
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----Cce-echhhHh
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPL-IDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~-i~~d~~~ 31 (203)
|.|++||||||+++.|+..+. ..+ ++.|++.
T Consensus 38 i~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 38 IAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred EECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 579999999999999998874 223 7777764
No 156
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.76 E-value=7.3e-08 Score=74.70 Aligned_cols=31 Identities=32% Similarity=0.495 Sum_probs=26.5
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~~i~~d~~~ 31 (203)
|+|++||||||+++.|+..+ +..+++.|++.
T Consensus 4 I~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~ 37 (273)
T cd02026 4 VAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYH 37 (273)
T ss_pred EECCCCCCHHHHHHHHHHhhCCCceEEEECcccc
Confidence 57999999999999999877 45688888774
No 157
>PLN02348 phosphoribulokinase
Probab=98.73 E-value=5e-08 Score=78.26 Aligned_cols=31 Identities=29% Similarity=0.392 Sum_probs=26.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCC--------------------ceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASALKI--------------------PLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~--------------------~~i~~d~~~ 31 (203)
|.|+|||||||+|+.|++.|+. .+|++|++.
T Consensus 54 IaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 54 LAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred EECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 5799999999999999998852 478888874
No 158
>PLN02165 adenylate isopentenyltransferase
Probab=98.72 E-value=8.5e-08 Score=75.53 Aligned_cols=30 Identities=30% Similarity=0.555 Sum_probs=28.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|.||+||||||+|..|++.++..+|++|.+
T Consensus 48 IiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 48 IMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred EECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 579999999999999999999999999987
No 159
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.68 E-value=9e-08 Score=71.97 Aligned_cols=32 Identities=31% Similarity=0.416 Sum_probs=26.8
Q ss_pred CCCCCCCChHHHHHHHHHhCC-------CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASALK-------IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-------~~~i~~d~~~~ 32 (203)
|.|++||||||+|+.|+..+. +.++++|.++.
T Consensus 4 I~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~ 42 (220)
T cd02025 4 IAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLY 42 (220)
T ss_pred eeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccC
Confidence 579999999999999998873 45788888853
No 160
>PRK07429 phosphoribulokinase; Provisional
Probab=98.68 E-value=1.4e-07 Score=74.74 Aligned_cols=31 Identities=32% Similarity=0.557 Sum_probs=27.0
Q ss_pred CCCCCCCChHHHHHHHHHhCC---CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASALK---IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~---~~~i~~d~~~ 31 (203)
|+|++||||||+++.|+..++ ..+++.|++.
T Consensus 13 I~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~ 46 (327)
T PRK07429 13 VAGDSGCGKTTFLRGLADLLGEELVTVICTDDYH 46 (327)
T ss_pred EECCCCCCHHHHHHHHHhHhccCceEEEEecccc
Confidence 579999999999999998887 5678888874
No 161
>PRK06761 hypothetical protein; Provisional
Probab=98.68 E-value=7.7e-08 Score=74.42 Aligned_cols=122 Identities=16% Similarity=0.109 Sum_probs=66.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+++.|++.++...++.+.+.....+....+...... ....+..++... .........+....
T Consensus 8 I~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~------~~eer~~~l~~~-~~f~~~l~~~~~~~ 80 (282)
T PRK06761 8 IEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACF------TKEEFDRLLSNY-PDFKEVLLKNVLKK 80 (282)
T ss_pred EECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCC------CHHHHHHHHHhh-hHHHHHHHHHHHHc
Confidence 58999999999999999999765555444322111000001100010 012222222111 11112244455677
Q ss_pred CCcEEEeCCCCchHhHHHHHH-HHHhhCCeEEEEEecCCCHHHHHHHHHhcCCC
Q 039424 81 GVSVVVDSPLSRRAHLEKLVK-LAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE 133 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~-~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~ 133 (203)
|..+|+-+......+++.+.. ... ...+..++ . .|.+.+.+|...|.++
T Consensus 81 g~~~i~~~~~l~~~yr~~~~~~~~~--~~~v~~~h-~-~p~e~i~~R~~~rw~~ 130 (282)
T PRK06761 81 GDYYLLPYRKIKNEFGDQFSDELFN--DISKNDIY-E-LPFDKNTELITDRWND 130 (282)
T ss_pred CCeEEEEehhhhHHHhhhhhhhhcc--cceeeeee-c-CCHHHHHHHHHHHHHH
Confidence 888999987777777777663 111 11233344 4 5667899999888754
No 162
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.66 E-value=6.1e-07 Score=68.15 Aligned_cols=128 Identities=17% Similarity=0.256 Sum_probs=73.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCce---echhhHhhhhh-----hhhhhhhc-----------cCCCccccchHHHHHhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPL---IDKDDVRDCTL-----SLQQTLQK-----------TTPHHQHATSAAAAASSL 61 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~---i~~d~~~~~~~-----~~~~~~~~-----------~~~~~~~~~~~~~~~~~~ 61 (203)
+.|+.|||||++||.||+++|+.+ +++|+++-.-. ++.+.+.. .+|.++ . ....+.+
T Consensus 76 VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~d---l-sa~~Q~r 151 (393)
T KOG3877|consen 76 VEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGD---L-SAAMQDR 151 (393)
T ss_pred EeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCcc---H-HHHHHHH
Confidence 469999999999999999999654 45666532111 11111100 112111 0 1111222
Q ss_pred hhhhhHHHHHHHHHHHhhCCCcEEEeCCCCc---------------hHhHHHHHHHHH----hhCCeEEEEEecCCCHHH
Q 039424 62 LNDLSYDVIWKIASTQLKLGVSVVVDSPLSR---------------RAHLEKLVKLAG----EMRAGLVIVECKPSDEAE 122 (203)
Q Consensus 62 ~~~~~~~~l~~~~~~~l~~~~~vIid~~~~~---------------~~~~~~~~~~~~----~~~~~~~~v~l~~~~~e~ 122 (203)
+-...+......++..|..|++||++.+... .+.++-+..+.+ ..--|.++|+|+.|.+ .
T Consensus 152 ~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~-~ 230 (393)
T KOG3877|consen 152 IYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVN-K 230 (393)
T ss_pred HHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcH-H
Confidence 2223445566677788889999999984322 122222211111 1224678999998776 7
Q ss_pred HHHHHHhcCCC
Q 039424 123 WRRRLEGRGNE 133 (203)
Q Consensus 123 ~~~R~~~R~~~ 133 (203)
+++++..|+..
T Consensus 231 v~~~Ik~rg~~ 241 (393)
T KOG3877|consen 231 VLENIKRRGNT 241 (393)
T ss_pred HHHHHHhcCCC
Confidence 99999999765
No 163
>KOG4622 consensus Predicted nucleotide kinase [General function prediction only]
Probab=98.61 E-value=6.3e-07 Score=64.69 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=57.8
Q ss_pred cEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHhhh
Q 039424 83 SVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLLEG 162 (203)
Q Consensus 83 ~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 162 (203)
.+++|..+....++-.|.++++.+|+.|-++|+....+ .+.++...|..-. ....+.+....+.
T Consensus 96 iilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~id-e~LqaNS~Rsda~---------------k~~~dtiRki~Ek 159 (291)
T KOG4622|consen 96 IILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGID-EALQANSHRSDAE---------------KQKNDTIRKIFEK 159 (291)
T ss_pred EEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHH-HHHHhccccccch---------------hCccHHHHHHHHh
Confidence 37777788888899999999999999999999986654 7888888876542 0122333333333
Q ss_pred hcCCCCCCCCCCCeEEEecCC
Q 039424 163 YCGCTEYDVGDVPKLTVDTTA 183 (203)
Q Consensus 163 ~~~~~~~~~~~~~~~~id~~~ 183 (203)
.+...+.+.++.+.+++++..
T Consensus 160 lE~PD~~ea~e~NSitLeg~d 180 (291)
T KOG4622|consen 160 LEDPDEIEALEENSITLEGDD 180 (291)
T ss_pred ccCccHHHHHHhcceeecccc
Confidence 333344555556778887776
No 164
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.59 E-value=1.7e-07 Score=68.31 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=28.6
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~~i~~d~~~~~ 33 (203)
|+|+|||||||+|+.|++.+ +..+++.|+++..
T Consensus 4 i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 4 IAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 57999999999999999886 4578999999753
No 165
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.56 E-value=1.2e-07 Score=69.90 Aligned_cols=33 Identities=39% Similarity=0.609 Sum_probs=26.4
Q ss_pred CCCCCCCChHHHHHHHHHhCC---C------ceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASALK---I------PLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~---~------~~i~~d~~~~~ 33 (203)
|+|+|||||||+|+.|+..++ . .+++.|.++..
T Consensus 4 I~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~ 45 (194)
T PF00485_consen 4 IAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDD 45 (194)
T ss_dssp EEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHH
T ss_pred EECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccc
Confidence 579999999999999999986 2 35667776543
No 166
>PRK05439 pantothenate kinase; Provisional
Probab=98.50 E-value=2.2e-07 Score=72.87 Aligned_cols=33 Identities=27% Similarity=0.350 Sum_probs=27.3
Q ss_pred CCCCCCCChHHHHHHHHHhCC-------CceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASALK-------IPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-------~~~i~~d~~~~~ 33 (203)
|+|+|||||||+|+.|+..++ +.++++|+++..
T Consensus 91 IaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~ 130 (311)
T PRK05439 91 IAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYP 130 (311)
T ss_pred EECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccC
Confidence 689999999999999998653 457999988643
No 167
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=98.47 E-value=4.6e-07 Score=66.55 Aligned_cols=124 Identities=15% Similarity=0.170 Sum_probs=59.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH--hhhhhhhhhhhhccCCCccccchHH-------HHHhhhh-hhhhHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV--RDCTLSLQQTLQKTTPHHQHATSAA-------AAASSLL-NDLSYDVI 70 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~~~~l 70 (203)
|.||+|+|||.+|-.||+++|+++|+.|.+ +..+. +..+.|.......-. ....+.+ .+.+.+.+
T Consensus 6 i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~-----v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~L 80 (233)
T PF01745_consen 6 IVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELS-----VGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHERL 80 (233)
T ss_dssp EE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGT-----TTTT---SGGGTT-EEEES----GGG-S--HHHHHHHH
T ss_pred EECCCCCChhHHHHHHHHHhCCCEEEecceecccccc-----cccCCCCHHHHcccceeeeccccccCCCcCHHHHHHHH
Confidence 469999999999999999999999999977 44332 111122111000000 0001111 11234445
Q ss_pred HHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHH-hhCCeEEEEEecCCCHHHHHHHHHhcCC
Q 039424 71 WKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAG-EMRAGLVIVECKPSDEAEWRRRLEGRGN 132 (203)
Q Consensus 71 ~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~-~~~~~~~~v~l~~~~~e~~~~R~~~R~~ 132 (203)
...+..... +..+|+.|.-. .....+.+-.- ..+....+..+..++.+....|..+|-+
T Consensus 81 i~~v~~~~~-~~~~IlEGGSI--SLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~ 140 (233)
T PF01745_consen 81 ISEVNSYSA-HGGLILEGGSI--SLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVR 140 (233)
T ss_dssp HHHHHTTTT-SSEEEEEE--H--HHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHH
T ss_pred HHHHHhccc-cCceEEeCchH--HHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHH
Confidence 555544444 67899999533 23333221111 1345666777777888877777777644
No 168
>PHA00729 NTP-binding motif containing protein
Probab=98.46 E-value=7.6e-07 Score=66.56 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=19.3
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|+|+||+||||+|..|++.++
T Consensus 22 ItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 22 IFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999875
No 169
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.42 E-value=2.1e-06 Score=72.26 Aligned_cols=31 Identities=23% Similarity=0.530 Sum_probs=26.5
Q ss_pred CCCCCCCChHHHHHHHHHhC-CCceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL-KIPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-~~~~i~~d~~~ 31 (203)
|.|++||||||+++.|+..+ +..+|++|.+.
T Consensus 70 IaGpSGSGKTTLAk~LaglLp~vgvIsmDdy~ 101 (656)
T PLN02318 70 VAGPSGAGKTVFTEKVLNFMPSIAVISMDNYN 101 (656)
T ss_pred EECCCCCcHHHHHHHHHhhCCCcEEEEEccee
Confidence 57999999999999999887 45688888874
No 170
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.38 E-value=1.2e-06 Score=64.90 Aligned_cols=171 Identities=16% Similarity=0.137 Sum_probs=90.4
Q ss_pred CCCCCCCChHHHHHHHHHhCC--CceechhhHhhhhhhhhhh----hhccCCCccccchHHHHHhhhh--hhhhHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK--IPLIDKDDVRDCTLSLQQT----LQKTTPHHQHATSAAAAASSLL--NDLSYDVIWK 72 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~--~~~i~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 72 (203)
|+||+|+||+|+.++|-++++ +.+..+.+.+....+..+. +.. .+...... ..+.+..+. .-.-+..-..
T Consensus 42 l~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~-~~~~~s~i-~~~~fiE~a~~~gn~yGtsi~ 119 (231)
T KOG0707|consen 42 LSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFST-TEEFLSMI-KNNEFIEFATFSGNKYGTSIA 119 (231)
T ss_pred EeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceecc-HHHHHHHh-hhhhhhhhhhhhcccCCchHH
Confidence 589999999999999999997 4444444443211110000 000 00000000 000000110 0011122234
Q ss_pred HHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCC
Q 039424 73 IASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPST 152 (203)
Q Consensus 73 ~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~ 152 (203)
.+......|+.+|+|--..... .++......+.+++.+++...+.+|+.+|+. ++
T Consensus 120 av~~~~~~gk~~ildId~qg~~-------~i~~~~~~~i~i~~~pps~~~~e~rl~~rgt------------------e~ 174 (231)
T KOG0707|consen 120 AVQRLMLSGKVCILDIDLQGVQ-------PIRATSLDAIYIFIKPPSIKILEERLRARGT------------------ET 174 (231)
T ss_pred HHHHHHhcCCcceeehhhcCce-------eeecCCCceEEEEecCCcchhHHHHhhccCc------------------ch
Confidence 5555566788888886221111 1111234456777777777799999999943 36
Q ss_pred HHHHHHHhh-hhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 153 WRDLERLLE-GYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 153 ~e~~~~~~~-~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+.+.+|++ ++.+.........-+.++.|+. ++++...++...+..
T Consensus 175 ~~~l~~r~~sa~~e~~~~~~~g~~d~~~~ns~--~lee~~kel~~~~~~ 221 (231)
T KOG0707|consen 175 EESLLKRLKSAEEEFEILENSGSFDLVIVNSD--RLEEAYKELEIFISS 221 (231)
T ss_pred HHHHHHHHHhhhhhhccccCCccccceecCCC--chhhhhhhhhhhhhH
Confidence 778888887 3333222222223456777767 888888888766543
No 171
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.38 E-value=1.5e-06 Score=68.37 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=28.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|+||+||||||+|..|++.++..+|+.|..
T Consensus 9 i~GptgsGKt~la~~la~~~~~~iis~Ds~ 38 (307)
T PRK00091 9 IVGPTASGKTALAIELAKRLNGEIISADSM 38 (307)
T ss_pred EECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence 589999999999999999999999999984
No 172
>PHA03132 thymidine kinase; Provisional
Probab=98.33 E-value=6e-06 Score=69.69 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=21.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|.|..||||||+++.|++.+|..++-
T Consensus 262 ~EGidGsGKTTlik~L~e~lg~~Vi~ 287 (580)
T PHA03132 262 LEGVMGVGKTTLLNHMRGILGDNVLV 287 (580)
T ss_pred EECCCCCCHHHHHHHHHHHhCCceEE
Confidence 57999999999999999988544443
No 173
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.32 E-value=5.1e-07 Score=70.36 Aligned_cols=32 Identities=31% Similarity=0.440 Sum_probs=25.3
Q ss_pred CCCCCCCChHHHHHHHHHhCC-------CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASALK-------IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-------~~~i~~d~~~~ 32 (203)
|.|++||||||+|+.|+..+. +.++++|.++.
T Consensus 67 IaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 67 IAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred EECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 579999999999998876553 45688888754
No 174
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.31 E-value=3.8e-07 Score=55.69 Aligned_cols=20 Identities=45% Similarity=0.738 Sum_probs=18.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
++|+|||||||+++.|++.+
T Consensus 4 i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 4 ITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999985
No 175
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=98.28 E-value=5e-06 Score=60.39 Aligned_cols=33 Identities=30% Similarity=0.470 Sum_probs=28.6
Q ss_pred CCCCCCCChHHHHHHHHHhC-CCceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL-KIPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-~~~~i~~d~~~~~ 33 (203)
|.|..-|||||+|+.|.+.| |..+|+-|+++.-
T Consensus 9 iSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp 42 (225)
T KOG3308|consen 9 ISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKP 42 (225)
T ss_pred eecccCCCHhHHHHHHHHHccCCeeeccccccCc
Confidence 45888899999999999888 6889999999764
No 176
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.27 E-value=8.9e-07 Score=61.62 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.9
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|+||+||||||+++.|++.+.
T Consensus 4 i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 4 LSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred EECCCCCCHHHHHHHHHhcCC
Confidence 579999999999999998764
No 177
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.27 E-value=2.4e-06 Score=64.93 Aligned_cols=30 Identities=23% Similarity=0.517 Sum_probs=21.8
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~ 30 (203)
|+|||||||||.++.+.+.+. ..+|+.|.-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence 589999999999999998874 335666533
No 178
>PRK09169 hypothetical protein; Validated
Probab=98.25 E-value=9.6e-06 Score=76.29 Aligned_cols=105 Identities=10% Similarity=-0.027 Sum_probs=63.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhh--hhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLS--LQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 78 (203)
|+|++|+||||+++.|+..+++.++++|..++.-.+ +... +.. .+ ...+.....+.+.+
T Consensus 2115 LIG~MGaGKTTIGr~LA~~Lg~~FiDtD~kIeks~GrkI~rI-----------------Fa~-eG-~FRe~Eaa~V~Dll 2175 (2316)
T PRK09169 2115 IEREVGPLLQALLQKLAGGLRVDKPHSVRKIAKKIGKKIARI-----------------QAL-RG-LSPEQAAARVRDAL 2175 (2316)
T ss_pred eeeCCCCCHhHHHHHHHHHhCCCccccHHHHHHHhCCCHHHH-----------------HHh-cC-chHHHHHHHHHHHh
Confidence 589999999999999999999999999999765332 1111 110 00 11222233444444
Q ss_pred hCCCcEEEeCCC--CchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCC
Q 039424 79 KLGVSVVVDSPL--SRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE 133 (203)
Q Consensus 79 ~~~~~vIid~~~--~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~ 133 (203)
. ...||-.+.+ ...+.+. .....| .+|++..+.+ .+.+|+....+.
T Consensus 2176 r-~~vVLSTGGGav~~~enr~----~L~~~G---lvV~L~an~~-tl~~Rty~g~NR 2223 (2316)
T PRK09169 2176 R-WEVVLPAEGFGAAVEQARQ----ALGAKG---LRVMRINNGF-AAPDTTYAGLNV 2223 (2316)
T ss_pred c-CCeEEeCCCCcccCHHHHH----HHHHCC---EEEEEECCHH-HHHHHhccCCCC
Confidence 3 3334444433 3333333 344456 6788887664 788998765443
No 179
>PRK09087 hypothetical protein; Validated
Probab=98.24 E-value=9.6e-06 Score=61.26 Aligned_cols=115 Identities=18% Similarity=0.196 Sum_probs=62.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh-hhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL-SLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 79 (203)
|.|++|||||++++.+++..+..+++.+.+..... .+....-..+.. .. + ......+...+....+
T Consensus 49 l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~iDDi--------~~----~-~~~~~~lf~l~n~~~~ 115 (226)
T PRK09087 49 LAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVLIEDI--------DA----G-GFDETGLFHLINSVRQ 115 (226)
T ss_pred EECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEEEECC--------CC----C-CCCHHHHHHHHHHHHh
Confidence 57999999999999999999999999976543322 111110000000 00 0 0112335556666666
Q ss_pred CCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHh
Q 039424 80 LGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEG 129 (203)
Q Consensus 80 ~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~ 129 (203)
.|..+|+-+......+-.....+...... ..++.+..++++.+.+-+..
T Consensus 116 ~g~~ilits~~~p~~~~~~~~dL~SRl~~-gl~~~l~~pd~e~~~~iL~~ 164 (226)
T PRK09087 116 AGTSLLMTSRLWPSSWNVKLPDLKSRLKA-ATVVEIGEPDDALLSQVIFK 164 (226)
T ss_pred CCCeEEEECCCChHHhccccccHHHHHhC-CceeecCCCCHHHHHHHHHH
Confidence 68888887754333332211222221111 15678887776654444443
No 180
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.24 E-value=5.2e-07 Score=61.93 Aligned_cols=28 Identities=54% Similarity=0.879 Sum_probs=24.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d 28 (203)
|.|+||+||||+++.+++.++.+++..+
T Consensus 3 l~G~~G~GKT~l~~~la~~l~~~~~~i~ 30 (132)
T PF00004_consen 3 LHGPPGTGKTTLARALAQYLGFPFIEID 30 (132)
T ss_dssp EESSTTSSHHHHHHHHHHHTTSEEEEEE
T ss_pred EECcCCCCeeHHHHHHHhhccccccccc
Confidence 5799999999999999999997764443
No 181
>KOG3327 consensus Thymidylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.23 E-value=7.6e-06 Score=58.65 Aligned_cols=106 Identities=18% Similarity=0.140 Sum_probs=56.9
Q ss_pred HHHHHhhCCCcEEEeCC-CCchHhHHHH----HHHHH----hhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCC
Q 039424 73 IASTQLKLGVSVVVDSP-LSRRAHLEKL----VKLAG----EMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDR 143 (203)
Q Consensus 73 ~~~~~l~~~~~vIid~~-~~~~~~~~~~----~~~~~----~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~ 143 (203)
.+.+.+..|..+|+|.. +..-.+ ... .+.+. ....|..+++|+.+|++ + .|..+++... |
T Consensus 81 ~i~e~l~kg~~~ivDRY~~SGvAy-S~AKgl~~dWc~~pd~gL~KPDlvlfL~v~p~~-~-a~rggfG~Er-----y--- 149 (208)
T KOG3327|consen 81 LIKEKLAKGTTLIVDRYSFSGVAY-SAAKGLDLDWCKQPDVGLPKPDLVLFLDVSPED-A-ARRGGFGEER-----Y--- 149 (208)
T ss_pred HHHHHHhcCCeEEEecceecchhh-hhhcCCCcchhhCCccCCCCCCeEEEEeCCHHH-H-HHhcCcchhH-----H---
Confidence 45667888999999982 222111 000 01121 11246678999988764 3 3333332221 0
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 144 PSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 144 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
++.+..++....|..+. .+......++|++. +.+++.+.|...++.
T Consensus 150 -------e~v~fqekv~~~~q~l~--r~e~~~~~~vDAs~--sve~V~~~V~~i~e~ 195 (208)
T KOG3327|consen 150 -------ETVAFQEKVLVFFQKLL--RKEDLNWHVVDASK--SVEKVHQQVRSLVEN 195 (208)
T ss_pred -------HHHHHHHHHHHHHHHHH--hccCCCeEEEecCc--cHHHHHHHHHHHHHH
Confidence 12222223333332222 12234678999999 999999999877653
No 182
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.21 E-value=1.7e-05 Score=57.33 Aligned_cols=31 Identities=35% Similarity=0.492 Sum_probs=24.5
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~ 31 (203)
++|+|||||||++..|+..+ | +.+++.|..+
T Consensus 5 ~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 5 LVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 57999999999999998765 4 4467877653
No 183
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.3e-06 Score=66.54 Aligned_cols=23 Identities=48% Similarity=0.840 Sum_probs=20.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
+.||||.||||+||.||+++.+.
T Consensus 182 lhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 182 LHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred EeCCCCCChhHHHHHHHHhheee
Confidence 47999999999999999999765
No 184
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=98.17 E-value=9e-06 Score=59.21 Aligned_cols=119 Identities=12% Similarity=0.132 Sum_probs=54.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh--hhhhhhhccCCCccccchHHHHH-------------hhhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL--SLQQTLQKTTPHHQHATSAAAAA-------------SSLLNDL 65 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~ 65 (203)
|.+..|||++|+|+.||++||++++|.+.+.+... ++.... .....+... ..... .......
T Consensus 4 Isr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~--~~~~~e~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (179)
T PF13189_consen 4 ISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEE--FEEFDEKKP-FNSFLYDFFRGMFPGSFEDHPDDDK 80 (179)
T ss_dssp EEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT--------------SS-HHH---HH---HHS--------------H
T ss_pred ECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHH--HHHHhcccc-CcchhhhhhccccccccccccHHHH
Confidence 34678999999999999999999999954433211 111110 000111000 00000 0011122
Q ss_pred hHHHHHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCC
Q 039424 66 SYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE 133 (203)
Q Consensus 66 ~~~~l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~ 133 (203)
.+....+.+.+....+ ++|+.|-... + +.+... ..+-|++.++ .+...+|+..|.+-
T Consensus 81 ~~~~~~~~i~~la~~~-~~Vi~GR~a~--~------il~~~~-~~l~V~i~A~-~~~Rv~ri~~~~~~ 137 (179)
T PF13189_consen 81 IFRAQSEIIRELAAKG-NCVIVGRCAN--Y------ILRDIP-NVLHVFIYAP-LEFRVERIMEREGI 137 (179)
T ss_dssp HHHHHHHHHHHHHH----EEEESTTHH--H------HTTT-T-TEEEEEEEE--HHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHhccC-CEEEEecCHh--h------hhCCCC-CeEEEEEECC-HHHHHHHHHHHcCC
Confidence 2333344555544455 6777774321 1 232222 3567888765 56899999998543
No 185
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.11 E-value=2.5e-05 Score=59.41 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=23.7
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~ 30 (203)
|+||||+|||+++..+++... +.+++.+..
T Consensus 50 l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 50 LWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 579999999999999987653 456776654
No 186
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.10 E-value=2.2e-05 Score=58.49 Aligned_cols=28 Identities=32% Similarity=0.666 Sum_probs=21.2
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--Cceechh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d 28 (203)
++|||||||||-+.-..+.| | ..+++.|
T Consensus 7 VIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLD 39 (290)
T KOG1533|consen 7 VIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLD 39 (290)
T ss_pred EEcCCCCCccchhhhHHHHHHHhCCceEEEecC
Confidence 58999999999987776555 3 3456665
No 187
>PRK14974 cell division protein FtsY; Provisional
Probab=98.08 E-value=3.5e-05 Score=61.40 Aligned_cols=31 Identities=32% Similarity=0.422 Sum_probs=23.2
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~ 31 (203)
|+|+|||||||.+..|+..+ | +.+++.|.++
T Consensus 145 ~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R 180 (336)
T PRK14974 145 FVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR 180 (336)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence 58999999999888887665 3 3356767554
No 188
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.05 E-value=5.2e-06 Score=59.91 Aligned_cols=30 Identities=23% Similarity=0.360 Sum_probs=24.6
Q ss_pred CCCCCCCChHHHHHHHHHhCC--CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALK--IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~--~~~i~~d~~ 30 (203)
|+|+|||||||+|..|+..++ +.++.+...
T Consensus 6 i~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~ 37 (170)
T PRK05800 6 VTGGARSGKSRFAERLAAQSGLQVLYIATAQP 37 (170)
T ss_pred EECCCCccHHHHHHHHHHHcCCCcEeCcCCCC
Confidence 579999999999999999886 456666544
No 189
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.02 E-value=3.5e-05 Score=63.55 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=25.5
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~ 32 (203)
|+|++||||||.+..||..+ | ..+++.|..+.
T Consensus 100 lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 100 LVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 57999999999999998776 3 44678877643
No 190
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.96 E-value=1.8e-05 Score=58.42 Aligned_cols=32 Identities=38% Similarity=0.555 Sum_probs=25.7
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~~i~~d~~~~ 32 (203)
|.||+||||||.+.+||..+ .+.+++.|..|-
T Consensus 6 lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 6 LVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred EECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 57999999999999998877 255788887743
No 191
>PRK15453 phosphoribulokinase; Provisional
Probab=97.94 E-value=3.8e-06 Score=64.74 Aligned_cols=32 Identities=19% Similarity=0.485 Sum_probs=27.6
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~~~ 32 (203)
|+|.|||||||+|+.|++.|+ ..+++.|.+++
T Consensus 10 ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 10 VTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred EECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 589999999999999998773 56799998865
No 192
>PRK06893 DNA replication initiation factor; Validated
Probab=97.93 E-value=7e-05 Score=56.73 Aligned_cols=28 Identities=25% Similarity=0.306 Sum_probs=22.9
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCceechh
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~~i~~d 28 (203)
|.|+||+|||+++..++..+ +..+++..
T Consensus 44 l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 44 IWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 46999999999999999775 45666664
No 193
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=6.1e-05 Score=58.79 Aligned_cols=126 Identities=21% Similarity=0.188 Sum_probs=67.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH--hhhhhhhhhh----hhccCCCccccchHHHHHhhhhhhhhHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV--RDCTLSLQQT----LQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIA 74 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (203)
|.|+.|||||-+|-.||.+|+..+|++|.+ ++.+--..+. -..+-|+.......... ..........-...+
T Consensus 12 I~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~--e~t~~~F~~~a~~ai 89 (348)
T KOG1384|consen 12 IMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEA--EYTAGEFEDDASRAI 89 (348)
T ss_pred EecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHh--hccHHHHHHHHHHHH
Confidence 579999999999999999999999999976 3332111110 01111221111110010 111111222334455
Q ss_pred HHHhhCCCcEEEeC-CCCchHhHHHHHHH----------------HHhhCCeEEEEEecCCCHHHHHHHHHhcCC
Q 039424 75 STQLKLGVSVVVDS-PLSRRAHLEKLVKL----------------AGEMRAGLVIVECKPSDEAEWRRRLEGRGN 132 (203)
Q Consensus 75 ~~~l~~~~~vIid~-~~~~~~~~~~~~~~----------------~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~ 132 (203)
....+.|+.-|+.| ++.. ...+..- ..+..++.++++++++. .++.+|+..|-.
T Consensus 90 e~I~~rgk~PIv~GGs~~y---i~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~-~VL~~~l~~RVD 160 (348)
T KOG1384|consen 90 EEIHSRGKLPIVVGGSNSY---LQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQ-AVLFERLDKRVD 160 (348)
T ss_pred HHHHhCCCCCEEeCCchhh---HHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecch-HHHHHHHHHHHH
Confidence 56666676655555 4332 1111100 00112557889999765 599999998853
No 194
>PF13173 AAA_14: AAA domain
Probab=97.92 E-value=8.8e-05 Score=50.89 Aligned_cols=31 Identities=42% Similarity=0.590 Sum_probs=26.1
Q ss_pred CCCCCCCChHHHHHHHHHhCC----CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASALK----IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~----~~~i~~d~~~ 31 (203)
|.|+.|+||||+++.+++.+. +.+++.++..
T Consensus 7 l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 7 LTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPR 41 (128)
T ss_pred EECCCCCCHHHHHHHHHHHhcccccceeeccCCHH
Confidence 579999999999999998865 6677877774
No 195
>PRK06620 hypothetical protein; Validated
Probab=97.90 E-value=4.9e-05 Score=56.95 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=22.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.|+||+|||++++.+++..+..+++.
T Consensus 49 l~Gp~G~GKThLl~a~~~~~~~~~~~~ 75 (214)
T PRK06620 49 IKGPSSSGKTYLTKIWQNLSNAYIIKD 75 (214)
T ss_pred EECCCCCCHHHHHHHHHhccCCEEcch
Confidence 579999999999999998887766553
No 196
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.89 E-value=7e-05 Score=61.43 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=25.5
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~ 31 (203)
|+|++||||||.+..||..+ | +.++++|..+
T Consensus 105 lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 105 FVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 57999999999999999766 4 4568888775
No 197
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.89 E-value=7.1e-05 Score=64.11 Aligned_cols=27 Identities=37% Similarity=0.597 Sum_probs=25.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
+|||||.||||+|.-+|++-||.+++.
T Consensus 331 L~GppGlGKTTLAHViAkqaGYsVvEI 357 (877)
T KOG1969|consen 331 LCGPPGLGKTTLAHVIAKQAGYSVVEI 357 (877)
T ss_pred eecCCCCChhHHHHHHHHhcCceEEEe
Confidence 689999999999999999999998766
No 198
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=6.6e-05 Score=63.19 Aligned_cols=27 Identities=44% Similarity=0.864 Sum_probs=24.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+|||.+|+.+|.++++++++.
T Consensus 228 lHGPPGCGKT~lA~AiAgel~vPf~~i 254 (802)
T KOG0733|consen 228 LHGPPGCGKTSLANAIAGELGVPFLSI 254 (802)
T ss_pred eeCCCCccHHHHHHHHhhhcCCceEee
Confidence 579999999999999999999998765
No 199
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.88 E-value=3.2e-05 Score=52.98 Aligned_cols=20 Identities=45% Similarity=0.825 Sum_probs=17.4
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+++.+++.+
T Consensus 9 i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 9 ISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp EEE-TTSSHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 57999999999999999876
No 200
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.87 E-value=8.3e-06 Score=60.76 Aligned_cols=25 Identities=44% Similarity=0.658 Sum_probs=20.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI 25 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i 25 (203)
+.||||.||||+|..+|+.++..+.
T Consensus 55 f~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 55 FYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp EESSTTSSHHHHHHHHHHHCT--EE
T ss_pred EECCCccchhHHHHHHHhccCCCeE
Confidence 4699999999999999999987653
No 201
>PRK08727 hypothetical protein; Validated
Probab=97.86 E-value=0.0002 Score=54.39 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=23.1
Q ss_pred CCCCCCCChHHHHHHHHHhC---CC--ceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL---KI--PLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~--~~i~~d~~~ 31 (203)
|.|++|+|||+++..++... |. .+++..+..
T Consensus 46 l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 46 LSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 57999999999999986554 33 466666543
No 202
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.86 E-value=5.1e-06 Score=63.59 Aligned_cols=32 Identities=19% Similarity=0.431 Sum_probs=27.8
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~~~ 32 (203)
|+|++||||||+++.|++.|+ +.+|+.|.+++
T Consensus 4 ItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 4 VTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 589999999999999998773 56899999976
No 203
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.86 E-value=0.00012 Score=56.79 Aligned_cols=31 Identities=32% Similarity=0.452 Sum_probs=24.7
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~ 31 (203)
++|++|+||||.+..||..+ | +.++++|.++
T Consensus 77 l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r 112 (272)
T TIGR00064 77 FVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR 112 (272)
T ss_pred EECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence 47999999999999998776 4 4468888653
No 204
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.84 E-value=7.9e-06 Score=57.41 Aligned_cols=20 Identities=50% Similarity=0.795 Sum_probs=18.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+|||||||++..+++.+
T Consensus 10 ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 10 ITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred EeCCCCccHHHHHHHHHHHH
Confidence 68999999999999999877
No 205
>PLN02748 tRNA dimethylallyltransferase
Probab=97.82 E-value=2.3e-05 Score=64.93 Aligned_cols=34 Identities=35% Similarity=0.514 Sum_probs=30.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhh--Hhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDD--VRDCT 34 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~--~~~~~ 34 (203)
|.||+||||||+|..||+.++..+|+.|. +++.+
T Consensus 27 i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgL 62 (468)
T PLN02748 27 VMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGL 62 (468)
T ss_pred EECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCc
Confidence 57999999999999999999999999995 46643
No 206
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.82 E-value=1.1e-05 Score=62.70 Aligned_cols=33 Identities=30% Similarity=0.396 Sum_probs=29.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH--hhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV--RDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~--~~~ 33 (203)
|+||+|||||++|..|++.++..+|+.|.+ ++.
T Consensus 4 i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~ 38 (287)
T TIGR00174 4 IMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKG 38 (287)
T ss_pred EECCCCCCHHHHHHHHHHhCCCcEEEechhheeee
Confidence 579999999999999999999999999975 544
No 207
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.81 E-value=8.3e-06 Score=58.39 Aligned_cols=30 Identities=33% Similarity=0.598 Sum_probs=21.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~ 33 (203)
|+|+||+||||+++.|++. |++++ ....+.
T Consensus 4 i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~ 33 (163)
T PF13521_consen 4 ITGGPSTGKTTLIEALAAR-GYPVV--PEYARE 33 (163)
T ss_dssp EE--TTSHHHHHHHHHHHH-T-EEE----TTHH
T ss_pred EECCCCCCHHHHHHHHHHc-CCeEE--eecHHH
Confidence 5899999999999999988 98887 444443
No 208
>PLN02840 tRNA dimethylallyltransferase
Probab=97.80 E-value=1.2e-05 Score=65.57 Aligned_cols=30 Identities=40% Similarity=0.552 Sum_probs=27.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|.||+||||||++..|+++++..+|+.|.+
T Consensus 26 I~GptgsGKTtla~~La~~~~~~iis~Ds~ 55 (421)
T PLN02840 26 ISGPTGAGKSRLALELAKRLNGEIISADSV 55 (421)
T ss_pred EECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence 579999999999999999999999999864
No 209
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00028 Score=57.68 Aligned_cols=32 Identities=28% Similarity=0.441 Sum_probs=25.1
Q ss_pred CCCCCCCChHHHHHHHHHhC----C--CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASAL----K--IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~--~~~i~~d~~~~ 32 (203)
|+|++||||||++..|+..+ | +.+++.|..+.
T Consensus 228 lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 228 FVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 57999999999999999754 3 44677777543
No 210
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.79 E-value=1.2e-05 Score=65.38 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=27.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|.||||+||||+|+.|++.++++++..|..
T Consensus 52 LiGppG~GKT~lAraLA~~l~~~fi~vdat 81 (441)
T TIGR00390 52 MIGPTGVGKTEIARRLAKLANAPFIKVEAT 81 (441)
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEEeecc
Confidence 579999999999999999999998888743
No 211
>PRK05642 DNA replication initiation factor; Validated
Probab=97.78 E-value=0.00018 Score=54.74 Aligned_cols=32 Identities=22% Similarity=0.337 Sum_probs=25.1
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~~i~~d~~~~ 32 (203)
|.|++|+|||.+++.++..+ .+.+++.+++..
T Consensus 50 l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (234)
T PRK05642 50 LWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD 86 (234)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh
Confidence 47999999999999987543 456788877753
No 212
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=97.78 E-value=3.3e-05 Score=61.28 Aligned_cols=95 Identities=24% Similarity=0.250 Sum_probs=71.7
Q ss_pred CCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhCC
Q 039424 2 KGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKLG 81 (203)
Q Consensus 2 ~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 81 (203)
.|.|||||||.++..-..-++..++.|.+- .+ +.+.-.-.+.+..+
T Consensus 275 vgfp~sGks~f~a~~~~~~~y~~vn~d~lg-------------~~---------------------~~C~~~~~e~l~~~ 320 (422)
T KOG2134|consen 275 VGFPGSGKSTFAAKRVVPNGYKIVNADTLG-------------TP---------------------QNCLLANAEALKHG 320 (422)
T ss_pred EecCCCCcchhhhhhcccCceeEeecccCC-------------Cc---------------------hhhHHHHHHHhhcc
Confidence 599999999999888766688888888772 11 11222334667889
Q ss_pred CcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcC
Q 039424 82 VSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRG 131 (203)
Q Consensus 82 ~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~ 131 (203)
..||+|.+....+.++++.+.+...+.|...+...++. +..+-.+..|.
T Consensus 321 ~sVvidnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~-eq~~hn~~fR~ 369 (422)
T KOG2134|consen 321 KSVVIDNTNPDAESRKYYLDCATEREIPIRCFEMNSSV-EQAQHNNRFRE 369 (422)
T ss_pred cEEeeCCCCcchHHHHHHhhhHHHhCccceeeeeccHH-Hhhhccccchh
Confidence 99999999888899999999999999999989888654 34444444443
No 213
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.77 E-value=1.2e-05 Score=55.13 Aligned_cols=23 Identities=52% Similarity=0.829 Sum_probs=20.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|.|+||+||||+++.|+..++..
T Consensus 7 l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 7 IVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred EECCCCCcHHHHHHHHHhccCCC
Confidence 57999999999999999888543
No 214
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.76 E-value=2.5e-05 Score=58.17 Aligned_cols=34 Identities=26% Similarity=0.256 Sum_probs=26.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCce-echhhHhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPL-IDKDDVRDCTL 35 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~-i~~d~~~~~~~ 35 (203)
|+|.|||||||+|+.+.+ .|.++ +++.+..+...
T Consensus 5 i~G~~gsGKstva~~~~~-~g~~~~~~~~d~ik~~l 39 (227)
T PHA02575 5 ISGKKRSGKDTVADFIIE-NYNAVKYQLADPIKEIL 39 (227)
T ss_pred EeCCCCCCHHHHHHHHHh-cCCcEEEehhHHHHHHH
Confidence 589999999999999974 56666 88877755533
No 215
>PHA03136 thymidine kinase; Provisional
Probab=97.76 E-value=0.0011 Score=53.35 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=20.0
Q ss_pred eEEEEEecCCCHHHHHHHHHhcCCCC
Q 039424 109 GLVIVECKPSDEAEWRRRLEGRGNEG 134 (203)
Q Consensus 109 ~~~~v~l~~~~~e~~~~R~~~R~~~~ 134 (203)
+..+|++..++ +++.+|+.+|++..
T Consensus 192 pD~IIyL~l~~-e~~~~RI~kRgR~~ 216 (378)
T PHA03136 192 GGNIVIMDLDE-CEHAERIIARGRPG 216 (378)
T ss_pred CCEEEEEeCCH-HHHHHHHHHcCCCc
Confidence 44679999866 58999999998764
No 216
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.76 E-value=0.00029 Score=58.01 Aligned_cols=32 Identities=34% Similarity=0.421 Sum_probs=24.9
Q ss_pred CCCCCCCChHHHHHHHHHhC----C--CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASAL----K--IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~--~~~i~~d~~~~ 32 (203)
++|++||||||.+..||..+ | +.+++.|..+-
T Consensus 104 ~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 104 MVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 57999999999988887663 3 45788887644
No 217
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.75 E-value=1.9e-05 Score=63.26 Aligned_cols=31 Identities=39% Similarity=0.505 Sum_probs=26.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~ 31 (203)
+-||||+||||+|+.|+..++..|.-...+.
T Consensus 53 l~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 53 LWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred EECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 3599999999999999999998877665553
No 218
>PF02224 Cytidylate_kin: Cytidylate kinase; InterPro: IPR011994 Cytidylate kinase (2.7.4.14 from EC) catalyses the phosphorylation of cytidine 5'-monophosphate (dCMP) to cytidine 5'-diphosphate (dCDP) in the presence of ATP or GTP. ; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase-containing compound metabolic process; PDB: 3R20_A 4DIE_A 3R8C_B 2H92_B 1KDT_A 1KDP_B 2FEO_A 1KDO_B 2CMK_A 1KDR_A ....
Probab=97.75 E-value=0.00025 Score=50.00 Aligned_cols=90 Identities=17% Similarity=0.189 Sum_probs=54.6
Q ss_pred hhCCCcEEEeCC----CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCH
Q 039424 78 LKLGVSVVVDSP----LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTW 153 (203)
Q Consensus 78 l~~~~~vIid~~----~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~ 153 (203)
+....++|+||- ...+. .+ +-|||++++++-.+||..+....+ ...++
T Consensus 59 ~a~~~~vV~eGRDigTvVfPd-------------A~-~KifLtAs~e~RA~RR~~e~~~~g--------------~~~~~ 110 (157)
T PF02224_consen 59 IAKKGGVVMEGRDIGTVVFPD-------------AD-LKIFLTASPEVRARRRYKELQEKG--------------KKVSY 110 (157)
T ss_dssp HHTTSCEEEEESSCCCCCCTT--------------S-EEEEEE--HHHHHHHHHHHHHHTT------------------H
T ss_pred HHHcCCeEEecCCCceEEcCC-------------CC-EEEEEECCHHHHHHHHHHHHHhCC--------------CCCCH
Confidence 344678999992 22211 11 579999999988899988764432 22467
Q ss_pred HHHHHHhhhhcCCCC-----CCCCCCCeEEEecCCCCChHHHHHHHHH
Q 039424 154 RDLERLLEGYCGCTE-----YDVGDVPKLTVDTTASVGFQELVSNVIE 196 (203)
Q Consensus 154 e~~~~~~~~~~~~~~-----~~~~~~~~~~id~~~~~~~~e~~~~i~~ 196 (203)
+++.+-+..++.... -...+...+.||||+ +++++++++|++
T Consensus 111 e~v~~~i~~RD~~D~~R~~aPL~~a~DAi~IDts~-lti~evv~~il~ 157 (157)
T PF02224_consen 111 EEVLEDIKERDERDSNREVAPLKKAEDAIVIDTSN-LTIEEVVEKILE 157 (157)
T ss_dssp HHHHHHHHHHHHHHHCTSSS-SS--TTSEEEETTT-S-HHHHHHHHHH
T ss_pred HHHHHHHHhhChhhccCccCCCccCCCeEEEECCC-CCHHHHHHHHhC
Confidence 777766665533211 123355679999999 999999999874
No 219
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=0.00032 Score=57.55 Aligned_cols=153 Identities=16% Similarity=0.151 Sum_probs=79.8
Q ss_pred CCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhCC-C
Q 039424 4 HPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKLG-V 82 (203)
Q Consensus 4 ~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~-~ 82 (203)
..|+||||+|+.|.+-|||+++..|++--. +.| ..+.+.+......| .
T Consensus 382 ~igcgktt~ak~l~~lf~w~~vqnd~lsgk----------~~~---------------------k~~~kai~~~~r~~~~ 430 (758)
T COG5324 382 TIGCGKTTVAKILEKLFGWPVVQNDNLSGK----------GGP---------------------KRFAKAIIEEFRNGHS 430 (758)
T ss_pred EeccCcccHHHHHHHHcCCcccccCCCCCC----------Cch---------------------hHHHHHHHHHhccCce
Confidence 479999999999999999999999998211 011 12223333334444 4
Q ss_pred cEEEeCCCCchHhHHHHHHH--HHhhCCeEEEEEecC--CCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHH
Q 039424 83 SVVVDSPLSRRAHLEKLVKL--AGEMRAGLVIVECKP--SDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLER 158 (203)
Q Consensus 83 ~vIid~~~~~~~~~~~~~~~--~~~~~~~~~~v~l~~--~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 158 (203)
.|++|..+.....+..+..- +-.-|..++-+-..- .-.+..+.|+.+|+.. |.... |. +..+.+..
T Consensus 431 ~v~~drnnh~~~~r~~lq~d~l~~~~~vr~v~~p~~~~~ev~e~~~~rvlqrg~~-hqsik-------~~--eg~~kv~~ 500 (758)
T COG5324 431 VVFADRNNHISNMRSTLQTDILALIDGVRFVALPFKHTPEVPEFVQNRVLQRGDR-HQSIK-------VS--EGVDKVKA 500 (758)
T ss_pred EEEEcccchhhhhhhhhhcceEEEecCcEEEecccccCcccHHHHHHHHHhccCC-cccee-------ec--cchHHHHH
Confidence 57778766554444443221 111122222221111 1124788999999764 11111 11 12233332
Q ss_pred ----HhhhhcCCCC---CCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 159 ----LLEGYCGCTE---YDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 159 ----~~~~~~~~~~---~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
.+++|.+... .+..-+..+.+|--. +.-+.+.+|++.+.
T Consensus 501 imn~f~k~ykp~~~~~~~d~~~d~~ield~~~--~sl~nar~i~n~~~ 546 (758)
T COG5324 501 IMNTFYKQYKPFDAGNKHDANYDDIIELDPLI--GSLENARRIVNYFK 546 (758)
T ss_pred HHHHHHHhcCCCCCCCCccccccceeeccccc--chhhhHHHHHHHHH
Confidence 4445544432 111123556777765 55566677777664
No 220
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.75 E-value=1.4e-05 Score=64.94 Aligned_cols=29 Identities=31% Similarity=0.548 Sum_probs=26.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~ 29 (203)
|+||||+||||+|+.|++.++.+++..|.
T Consensus 55 liGp~G~GKT~LAr~LAk~l~~~fi~vD~ 83 (443)
T PRK05201 55 MIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (443)
T ss_pred EECCCCCCHHHHHHHHHHHhCChheeecc
Confidence 57999999999999999999988877764
No 221
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.74 E-value=1.2e-05 Score=55.82 Aligned_cols=24 Identities=50% Similarity=0.808 Sum_probs=21.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCce
Q 039424 1 MKGHPGTGKSTLADAIASALKIPL 24 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~ 24 (203)
|.|+||+|||++++.|++.++.++
T Consensus 4 L~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 4 LVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEESSSSSHHHHHHHHHHHHTCEE
T ss_pred EECCCCCCHHHHHHHHHHHhhcce
Confidence 579999999999999999998665
No 222
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.74 E-value=0.0002 Score=52.64 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=22.7
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~ 30 (203)
+.||.||||||.|..+-++. | +.+++.|.-
T Consensus 8 V~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPA 42 (273)
T KOG1534|consen 8 VMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPA 42 (273)
T ss_pred EEccCCCCcchHHHHHHHHHHhhCceeEEeecCHH
Confidence 47999999999999996554 2 556666644
No 223
>PRK10867 signal recognition particle protein; Provisional
Probab=97.72 E-value=0.00038 Score=57.39 Aligned_cols=32 Identities=41% Similarity=0.533 Sum_probs=24.5
Q ss_pred CCCCCCCChHHHHHHHHHhC----C--CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASAL----K--IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~--~~~i~~d~~~~ 32 (203)
++|++||||||.+..||..+ | +.+++.|..+-
T Consensus 105 ~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 105 MVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 57999999999888777644 3 45788887654
No 224
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00026 Score=58.86 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+||||+||||+|+.|++.++..
T Consensus 45 f~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 45 FFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred EECCCCCCHHHHHHHHHHhcCcc
Confidence 57999999999999999998753
No 225
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.67 E-value=0.00038 Score=56.63 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=25.2
Q ss_pred CCCCCCCChHHHHHHHHHhCC---------CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASALK---------IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~---------~~~i~~d~~~ 31 (203)
+.|++|+||||.+..||..+. +.+++.|..+
T Consensus 179 lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R 218 (388)
T PRK12723 179 LVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR 218 (388)
T ss_pred EECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence 479999999999999997652 4578888764
No 226
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00062 Score=57.83 Aligned_cols=27 Identities=33% Similarity=0.596 Sum_probs=23.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
+-||||+||||+|+.||..-+..|++.
T Consensus 473 lyGPPGC~KT~lAkalAne~~~nFlsv 499 (693)
T KOG0730|consen 473 LYGPPGCGKTLLAKALANEAGMNFLSV 499 (693)
T ss_pred EECCCCcchHHHHHHHhhhhcCCeeec
Confidence 469999999999999999888777665
No 227
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.67 E-value=0.00022 Score=59.61 Aligned_cols=22 Identities=41% Similarity=0.635 Sum_probs=19.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCC
Q 039424 1 MKGHPGTGKSTLADAIASALKI 22 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~ 22 (203)
|.||||+||||+|+.+++.++.
T Consensus 41 f~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 41 FAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EECCCCCCHHHHHHHHHHHhcc
Confidence 5799999999999999998864
No 228
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.66 E-value=2.1e-05 Score=62.84 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=19.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCC
Q 039424 1 MKGHPGTGKSTLADAIASALKI 22 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~ 22 (203)
|.|||||||||+|+.|++.++-
T Consensus 83 L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 83 LLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred EECCCCCCHHHHHHHHHHHHhh
Confidence 5799999999999999998853
No 229
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=97.64 E-value=2.7e-05 Score=61.52 Aligned_cols=25 Identities=44% Similarity=0.652 Sum_probs=23.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI 25 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i 25 (203)
|.|+||+||||+++.||+.+|++++
T Consensus 69 L~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 69 VQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred EEeCCCChHHHHHHHHHHHHCCCeE
Confidence 5799999999999999999998875
No 230
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.63 E-value=0.00065 Score=55.14 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=25.3
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~ 31 (203)
|+|++||||||.+..||..+ | +.++++|..+
T Consensus 246 LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 246 LIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 57999999999999998766 2 4578888764
No 231
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.63 E-value=0.00041 Score=55.05 Aligned_cols=31 Identities=29% Similarity=0.401 Sum_probs=24.2
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~ 31 (203)
|+||+||||||.+..||..+ | +.+++.|..+
T Consensus 119 lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 119 VVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred EECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 57999999999999998776 3 4456776643
No 232
>CHL00181 cbbX CbbX; Provisional
Probab=97.63 E-value=0.00038 Score=54.53 Aligned_cols=20 Identities=50% Similarity=0.783 Sum_probs=18.0
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+|+.+++.+
T Consensus 64 l~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 64 FTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 47999999999999998765
No 233
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.61 E-value=3.7e-05 Score=59.44 Aligned_cols=25 Identities=40% Similarity=0.660 Sum_probs=22.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI 25 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i 25 (203)
|.|+||+||||+|+.|++.+|.+++
T Consensus 26 L~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 26 LRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 5799999999999999998887765
No 234
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=97.61 E-value=3.2e-05 Score=63.36 Aligned_cols=29 Identities=34% Similarity=0.611 Sum_probs=25.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~ 29 (203)
|.||||+||||+|+.|++.++++++..|.
T Consensus 113 l~Gp~GtGKT~lAr~lA~~l~~pf~~id~ 141 (412)
T PRK05342 113 LIGPTGSGKTLLAQTLARILDVPFAIADA 141 (412)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCceecch
Confidence 57999999999999999999988776553
No 235
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.60 E-value=4.3e-05 Score=52.64 Aligned_cols=23 Identities=39% Similarity=0.670 Sum_probs=21.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|.|++||||||+++.+++.+|+.
T Consensus 27 l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 27 LKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred EEcCCCCCHHHHHHHHHHHcCCC
Confidence 57999999999999999999864
No 236
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.59 E-value=2.1e-05 Score=53.47 Aligned_cols=25 Identities=44% Similarity=0.773 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI 25 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i 25 (203)
|.|+||+||||+++.||+.+|..+.
T Consensus 4 leg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 4 LEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EES---HHHHHHHHHHHHHTT--EE
T ss_pred eECCCccHHHHHHHHHHHHcCCcee
Confidence 4699999999999999999987653
No 237
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.57 E-value=0.00049 Score=56.77 Aligned_cols=27 Identities=48% Similarity=0.651 Sum_probs=23.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.|+||+||||+|+.+++.++..++..
T Consensus 41 L~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 41 LWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 579999999999999999887666544
No 238
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.0011 Score=53.71 Aligned_cols=22 Identities=36% Similarity=0.644 Sum_probs=20.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCC
Q 039424 1 MKGHPGTGKSTLADAIASALKI 22 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~ 22 (203)
|+||||+||||+|+.+++.++.
T Consensus 43 ~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 43 LSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred EecCCCCCHHHHHHHHHHHhcC
Confidence 5799999999999999998864
No 239
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.55 E-value=3.7e-05 Score=55.37 Aligned_cols=20 Identities=40% Similarity=0.758 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|||.||+||||+.+.+.+.+
T Consensus 4 iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 4 ITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EES-TTSSHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHHh
Confidence 68999999999999999888
No 240
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.54 E-value=5e-05 Score=52.49 Aligned_cols=20 Identities=65% Similarity=0.941 Sum_probs=18.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+++.+++.+
T Consensus 24 i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 24 LYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999887
No 241
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.53 E-value=5.1e-05 Score=62.03 Aligned_cols=28 Identities=36% Similarity=0.640 Sum_probs=24.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d 28 (203)
|.||||+|||++|+.|++.++++++..+
T Consensus 121 L~GP~GsGKT~lAraLA~~l~~pf~~~d 148 (413)
T TIGR00382 121 LIGPTGSGKTLLAQTLARILNVPFAIAD 148 (413)
T ss_pred EECCCCcCHHHHHHHHHHhcCCCeEEec
Confidence 4799999999999999999988775443
No 242
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.53 E-value=0.00093 Score=53.29 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=26.7
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRDCT 34 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~~~ 34 (203)
|.|++|+|||+++..++..+ | +.++++.++...+
T Consensus 188 l~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l 226 (329)
T PRK06835 188 FYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL 226 (329)
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH
Confidence 57999999999999999876 3 4567777775543
No 243
>PF13245 AAA_19: Part of AAA domain
Probab=97.53 E-value=4.9e-05 Score=47.18 Aligned_cols=20 Identities=60% Similarity=0.900 Sum_probs=14.2
Q ss_pred CCCCCCCChH-HHHHHHHHhC
Q 039424 1 MKGHPGTGKS-TLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKS-T~a~~L~~~~ 20 (203)
|.|+|||||| |++..++..+
T Consensus 15 v~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 15 VQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 4799999999 5555555443
No 244
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.52 E-value=0.00088 Score=56.10 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=19.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCC
Q 039424 1 MKGHPGTGKSTLADAIASALKI 22 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~ 22 (203)
|+|++|+||||+|+.||+.+++
T Consensus 40 f~Gp~G~GKTT~ArilAk~LnC 61 (491)
T PRK14964 40 LVGASGVGKTTCARIISLCLNC 61 (491)
T ss_pred EECCCCccHHHHHHHHHHHHcC
Confidence 5899999999999999988764
No 245
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.00055 Score=55.35 Aligned_cols=31 Identities=29% Similarity=0.519 Sum_probs=23.9
Q ss_pred CCCCCCCChHHHHHHHHHhC----C---CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL----K---IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~---~~~i~~d~~~ 31 (203)
|.||+|+||||++..|+..+ | +.++..|.++
T Consensus 142 lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 142 LMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 57999999999999998653 3 3467777663
No 246
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=97.50 E-value=0.00027 Score=54.07 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=18.1
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
++|+||+||||.|+.|+..+
T Consensus 87 iaGsvavGKST~ar~L~~ll 106 (283)
T COG1072 87 IAGSVAVGKSTTARILQALL 106 (283)
T ss_pred eccCccccHHHHHHHHHHHH
Confidence 57999999999999998776
No 247
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=97.49 E-value=6.5e-05 Score=61.40 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|+|++||||||+++.|++.+|..++.
T Consensus 224 I~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 224 ILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 57999999999999999999877543
No 248
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.48 E-value=0.00096 Score=52.22 Aligned_cols=20 Identities=50% Similarity=0.798 Sum_probs=17.2
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+|+.+++.+
T Consensus 63 l~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 63 FTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 47999999999998887665
No 249
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.48 E-value=4.9e-05 Score=58.70 Aligned_cols=20 Identities=45% Similarity=0.840 Sum_probs=18.1
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.||||+||||+|+.+++.+
T Consensus 47 l~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 47 FKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999999865
No 250
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00019 Score=56.24 Aligned_cols=33 Identities=30% Similarity=0.376 Sum_probs=29.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH--hhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV--RDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~--~~~ 33 (203)
|+||.+||||-+|-.||+++|..+||.|.. ++.
T Consensus 8 I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~ 42 (308)
T COG0324 8 IAGPTASGKTALAIALAKRLGGEIISLDSMQVYRG 42 (308)
T ss_pred EECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCC
Confidence 589999999999999999999999999976 544
No 251
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.44 E-value=8.4e-05 Score=62.60 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=23.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|+|||||||||..+.||+.+|+.++.
T Consensus 50 LtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 50 LTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred EECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 58999999999999999999976654
No 252
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.00077 Score=54.45 Aligned_cols=32 Identities=28% Similarity=0.474 Sum_probs=25.8
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~ 32 (203)
|+||.||||||.+..|+..+ | +.++++|..+-
T Consensus 211 lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 211 LIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 57999999999999998765 3 45788887743
No 253
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.43 E-value=0.0013 Score=49.51 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=23.0
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~ 30 (203)
|+|++|+||||+++.+++... +.+++...+
T Consensus 43 l~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 43 LWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 579999999999999987652 445665555
No 254
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.43 E-value=0.0012 Score=52.77 Aligned_cols=20 Identities=40% Similarity=0.770 Sum_probs=18.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.||||+||||+|+.+++.+
T Consensus 41 l~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 41 VQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999877
No 255
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.42 E-value=8e-05 Score=60.84 Aligned_cols=27 Identities=41% Similarity=0.621 Sum_probs=23.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+|||++|+.++..++.+++..
T Consensus 170 L~GppGtGKT~lAkaia~~~~~~~i~v 196 (389)
T PRK03992 170 LYGPPGTGKTLLAKAVAHETNATFIRV 196 (389)
T ss_pred EECCCCCChHHHHHHHHHHhCCCEEEe
Confidence 479999999999999999998765443
No 256
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=97.42 E-value=8.8e-05 Score=52.04 Aligned_cols=29 Identities=34% Similarity=0.456 Sum_probs=23.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|+|++|+||||+|..|.+ .|+.+++-|.+
T Consensus 19 i~G~sG~GKStlal~L~~-~g~~lvaDD~v 47 (149)
T cd01918 19 ITGPSGIGKSELALELIK-RGHRLVADDRV 47 (149)
T ss_pred EEcCCCCCHHHHHHHHHH-cCCeEEECCEE
Confidence 579999999999999984 58888866654
No 257
>PRK12377 putative replication protein; Provisional
Probab=97.42 E-value=0.00056 Score=52.34 Aligned_cols=33 Identities=39% Similarity=0.550 Sum_probs=25.4
Q ss_pred CCCCCCCChHHHHHHHHHhC---CC--ceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---KI--PLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~--~~i~~d~~~~~ 33 (203)
|.|+||+|||++|..++..+ |. .+++..++...
T Consensus 106 l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 106 FSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 47999999999999999887 33 45666666543
No 258
>PLN02796 D-glycerate 3-kinase
Probab=97.41 E-value=7.1e-05 Score=59.51 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=25.7
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~~ 31 (203)
|.|++||||||+++.|...+. ...|+.|+++
T Consensus 105 I~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 105 ISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred EECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 579999999999999998874 3467888775
No 259
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.002 Score=55.61 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+||+|+||||+|+.||+.+++.
T Consensus 42 F~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 42 FTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred EECCCCCCHHHHHHHHHHHhCCC
Confidence 57999999999999999998764
No 260
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.41 E-value=8.2e-05 Score=62.28 Aligned_cols=28 Identities=46% Similarity=0.672 Sum_probs=24.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d 28 (203)
+.||||+|||++|+.+|..++++++..+
T Consensus 264 L~GPpGTGKTllAkaiA~e~~~~~~~l~ 291 (489)
T CHL00195 264 LVGIQGTGKSLTAKAIANDWQLPLLRLD 291 (489)
T ss_pred EECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence 4699999999999999999998876543
No 261
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.41 E-value=0.0012 Score=55.65 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=21.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+|+||+||||+|+.|++.++..
T Consensus 48 f~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 48 LTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred EECCCCCCHHHHHHHHHHHhcCc
Confidence 58999999999999999998764
No 262
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.0014 Score=53.81 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|.||||+||||+|+.+|+.+...
T Consensus 43 f~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 43 FSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred EECCCCCCHHHHHHHHHHHhcCC
Confidence 57999999999999999998763
No 263
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.40 E-value=0.0018 Score=55.78 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCC
Q 039424 1 MKGHPGTGKSTLADAIASALKI 22 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~ 22 (203)
|+|++|+||||+++.|++.+++
T Consensus 43 FtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 43 FTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EECCCCCCHHHHHHHHHHHhcC
Confidence 5899999999999999999876
No 264
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.39 E-value=0.0018 Score=51.40 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=20.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCce
Q 039424 1 MKGHPGTGKSTLADAIASALKIPL 24 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~ 24 (203)
+.|+||+||||+++.+++.++..+
T Consensus 48 l~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 48 HSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred eeCcCCCCHHHHHHHHHHHhCccc
Confidence 479999999999999998876543
No 265
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.38 E-value=0.00011 Score=58.64 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=23.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|.|+||+||||+++.|+..++.+++.
T Consensus 167 ~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 167 ILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred EECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 57999999999999999999988743
No 266
>PRK04195 replication factor C large subunit; Provisional
Probab=97.37 E-value=0.00011 Score=61.77 Aligned_cols=27 Identities=37% Similarity=0.633 Sum_probs=24.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+||||+++.|++.+++.++..
T Consensus 44 L~GppG~GKTtla~ala~el~~~~iel 70 (482)
T PRK04195 44 LYGPPGVGKTSLAHALANDYGWEVIEL 70 (482)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 579999999999999999999877654
No 267
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.37 E-value=0.0027 Score=56.46 Aligned_cols=23 Identities=35% Similarity=0.560 Sum_probs=20.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+|+||+||||+|+.|++.++..
T Consensus 43 FtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 43 FTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred EECCCCCCHHHHHHHHHHhccCc
Confidence 58999999999999999998764
No 268
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.36 E-value=0.0029 Score=54.16 Aligned_cols=22 Identities=32% Similarity=0.583 Sum_probs=19.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCC
Q 039424 1 MKGHPGTGKSTLADAIASALKI 22 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~ 22 (203)
|.||+|+||||+|+.+|+.+..
T Consensus 43 f~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 43 FSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred EECCCCCCHHHHHHHHHHHhcC
Confidence 5799999999999999999853
No 269
>PHA02244 ATPase-like protein
Probab=97.35 E-value=0.00011 Score=58.87 Aligned_cols=30 Identities=33% Similarity=0.597 Sum_probs=26.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|.|+||+||||+|+.|+..++.+++....+
T Consensus 124 L~GppGtGKTtLA~aLA~~lg~pfv~In~l 153 (383)
T PHA02244 124 LKGGAGSGKNHIAEQIAEALDLDFYFMNAI 153 (383)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEEecC
Confidence 579999999999999999999888766543
No 270
>PRK08116 hypothetical protein; Validated
Probab=97.35 E-value=0.0024 Score=49.52 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=25.2
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~~ 33 (203)
|.|++|+|||.+|..+++.+ + +.+++..++...
T Consensus 119 l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~ 156 (268)
T PRK08116 119 LWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR 156 (268)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 57999999999999999875 3 345676666443
No 271
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.34 E-value=0.00012 Score=61.67 Aligned_cols=27 Identities=41% Similarity=0.720 Sum_probs=23.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+|||++++.|+...+.+++..
T Consensus 93 L~GppGtGKT~la~alA~~~~~~~~~i 119 (495)
T TIGR01241 93 LVGPPGTGKTLLAKAVAGEAGVPFFSI 119 (495)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCeeec
Confidence 479999999999999999998877654
No 272
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.34 E-value=0.00014 Score=59.01 Aligned_cols=27 Identities=41% Similarity=0.621 Sum_probs=23.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+||||+++.++..++.+++..
T Consensus 161 L~GppGtGKT~lakaia~~l~~~~~~v 187 (364)
T TIGR01242 161 LYGPPGTGKTLLAKAVAHETNATFIRV 187 (364)
T ss_pred EECCCCCCHHHHHHHHHHhCCCCEEec
Confidence 479999999999999999998776543
No 273
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.34 E-value=0.0021 Score=54.63 Aligned_cols=22 Identities=36% Similarity=0.607 Sum_probs=20.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCC
Q 039424 1 MKGHPGTGKSTLADAIASALKI 22 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~ 22 (203)
|+|++|+||||+|+.|++.++.
T Consensus 43 f~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 43 FTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred EECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999998864
No 274
>KOG0234 consensus Fructose-6-phosphate 2-kinase/fructose-2,6-biphosphatase [Carbohydrate transport and metabolism]
Probab=97.33 E-value=0.0054 Score=50.03 Aligned_cols=123 Identities=16% Similarity=0.246 Sum_probs=75.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCC-----ceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKI-----PLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~-----~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
+.|.|+.|||.++..|.+.++| .+.+.+.+++........ .+... ++.... .....+.+...+.+...
T Consensus 33 mvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s----~~ff~-p~n~~~--~~lr~~~a~~~l~D~~~ 105 (438)
T KOG0234|consen 33 MVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDS----EPFFL-PDNAEA--SKLRKQLALLALNDLLH 105 (438)
T ss_pred EecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhccccc----ccccc-cCChhh--hhhhHHHHHHHhhhHHH
Confidence 4699999999999999987754 456667666654421110 11111 000011 11111223333333333
Q ss_pred HHh-hCCCcEEEeCCCCchHhHHHHHHHHH-hhCCeEEEEEecCCCHHHHHHHHHhc
Q 039424 76 TQL-KLGVSVVVDSPLSRRAHLEKLVKLAG-EMRAGLVIVECKPSDEAEWRRRLEGR 130 (203)
Q Consensus 76 ~~l-~~~~~vIid~~~~~~~~~~~~~~~~~-~~~~~~~~v~l~~~~~e~~~~R~~~R 130 (203)
-.. ..|...|.|.++.....+..+...++ ..+..+.+|...|.++..+-+-+..+
T Consensus 106 ~l~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~ 162 (438)
T KOG0234|consen 106 FLIKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNNIREV 162 (438)
T ss_pred HhhccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhhhhhh
Confidence 333 44788999999999999998888885 67888888888888875555555544
No 275
>PHA03135 thymidine kinase; Provisional
Probab=97.33 E-value=0.021 Score=45.37 Aligned_cols=19 Identities=21% Similarity=0.529 Sum_probs=17.2
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|+.|+||||+++.|++.
T Consensus 15 lDG~~GvGKTT~~~~l~~~ 33 (343)
T PHA03135 15 LDGPFGIGKTSMLNEMPDH 33 (343)
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 5799999999999999975
No 276
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.33 E-value=0.00014 Score=59.41 Aligned_cols=27 Identities=41% Similarity=0.612 Sum_probs=23.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+||||+++.++..++.+++..
T Consensus 184 L~GppGTGKT~LAkalA~~l~~~fi~i 210 (398)
T PTZ00454 184 LYGPPGTGKTMLAKAVAHHTTATFIRV 210 (398)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 479999999999999999998776543
No 277
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.32 E-value=0.0026 Score=48.66 Aligned_cols=28 Identities=43% Similarity=0.725 Sum_probs=24.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d 28 (203)
+-||||.|||-+|+.||.+.+.+++...
T Consensus 156 FyGppGTGKTm~Akalane~kvp~l~vk 183 (368)
T COG1223 156 FYGPPGTGKTMMAKALANEAKVPLLLVK 183 (368)
T ss_pred EECCCCccHHHHHHHHhcccCCceEEec
Confidence 4699999999999999999998887654
No 278
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.32 E-value=0.00014 Score=57.34 Aligned_cols=24 Identities=46% Similarity=0.751 Sum_probs=21.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCce
Q 039424 1 MKGHPGTGKSTLADAIASALKIPL 24 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~ 24 (203)
|+||||+||||+|+.+++.++..+
T Consensus 35 l~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 35 LYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCE
Confidence 579999999999999999987553
No 279
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.32 E-value=0.00011 Score=48.58 Aligned_cols=28 Identities=29% Similarity=0.392 Sum_probs=20.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|.|++||||||+++.+. -|-..+..+++
T Consensus 20 I~GpSGsGKSTLl~~l~--~G~i~~~g~di 47 (107)
T cd00820 20 ITGDSGIGKTELALELI--KRKHRLVGDDN 47 (107)
T ss_pred EEcCCCCCHHHHHHHhh--CCeEEEeeEeH
Confidence 47999999999999987 33334555555
No 280
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.31 E-value=0.00015 Score=58.00 Aligned_cols=24 Identities=42% Similarity=0.760 Sum_probs=21.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCce
Q 039424 1 MKGHPGTGKSTLADAIASALKIPL 24 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~ 24 (203)
|.||||+||||+|+.+++.++..+
T Consensus 56 l~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 56 LYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred EECCCCccHHHHHHHHHHHhCCCe
Confidence 579999999999999999998654
No 281
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.31 E-value=0.0025 Score=55.81 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+|++|+||||+++.|++.+++.
T Consensus 43 FtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 43 FTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred EECCCCCCHHHHHHHHHHHhcCc
Confidence 58999999999999999998753
No 282
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.31 E-value=0.0046 Score=54.44 Aligned_cols=29 Identities=34% Similarity=0.530 Sum_probs=23.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~ 29 (203)
|.||||+||||+|+.+++.++..++..+.
T Consensus 57 L~GPpGtGKTTLA~aIA~~~~~~f~~lna 85 (725)
T PRK13341 57 LYGPPGVGKTTLARIIANHTRAHFSSLNA 85 (725)
T ss_pred EECCCCCCHHHHHHHHHHHhcCcceeehh
Confidence 57999999999999999888766555443
No 283
>PF05729 NACHT: NACHT domain
Probab=97.30 E-value=0.00011 Score=52.14 Aligned_cols=20 Identities=50% Similarity=0.851 Sum_probs=18.4
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|.||+||||+++.++..+
T Consensus 5 I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 5 ISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred EECCCCCChHHHHHHHHHHH
Confidence 57999999999999999876
No 284
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.30 E-value=0.0019 Score=48.56 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=26.0
Q ss_pred CCCCCCCChHHHHHHHHHhC-------CCceechhhHhhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL-------KIPLIDKDDVRDCT 34 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-------~~~~i~~d~~~~~~ 34 (203)
|.|++|+|||.+.+.++..+ .+.+++.+++...+
T Consensus 39 l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~ 79 (219)
T PF00308_consen 39 LYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREF 79 (219)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHH
Confidence 46999999999999997654 24578888876543
No 285
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=97.29 E-value=0.0054 Score=46.33 Aligned_cols=106 Identities=14% Similarity=0.099 Sum_probs=68.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|.|..||||..+.+.|...++-..+..-.+. .|.. .+..++.++..-...-..
T Consensus 36 ~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~-------------~pt~--------------eE~~~p~lwRfw~~lP~~ 88 (230)
T TIGR03707 36 FEGRDAAGKGGTIKRITEHLNPRGARVVALP-------------KPSD--------------RERTQWYFQRYVQHLPAA 88 (230)
T ss_pred EeCCCCCCchHHHHHHHHhcCCCeeEEEeCC-------------CCCH--------------HHHcChHHHHHHHhCCCC
Confidence 4799999999999999999865444433331 1110 012334455555555566
Q ss_pred CCcEEEeCCCCc-------------hH------hHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCC
Q 039424 81 GVSVVVDSPLSR-------------RA------HLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEG 134 (203)
Q Consensus 81 ~~~vIid~~~~~-------------~~------~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~ 134 (203)
|...|.|++-.. .+ ....|.++....|+-++-++|+.+. +..++|+..|..+|
T Consensus 89 G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IlKfflhIsk-~eQ~kRl~~r~~~p 160 (230)
T TIGR03707 89 GEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFERMLVRDGIHLFKYWLSVSR-EEQLRRFKARIDDP 160 (230)
T ss_pred CeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCH-HHHHHHHHHHhcCC
Confidence 777777763111 11 2234555666778889999999765 58999999997765
No 286
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.29 E-value=0.0019 Score=54.60 Aligned_cols=23 Identities=30% Similarity=0.570 Sum_probs=20.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+|++|+||||+|+.|++.++..
T Consensus 43 f~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 43 FTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred EECCCCCCHHHHHHHHHHHhcCC
Confidence 57999999999999999998753
No 287
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00016 Score=58.83 Aligned_cols=27 Identities=41% Similarity=0.635 Sum_probs=24.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
+-||||+||||+..++|..|++.+++.
T Consensus 240 LYGPPGTGKSS~IaAmAn~L~ydIydL 266 (457)
T KOG0743|consen 240 LYGPPGTGKSSFIAAMANYLNYDIYDL 266 (457)
T ss_pred eeCCCCCCHHHHHHHHHhhcCCceEEe
Confidence 469999999999999999999887765
No 288
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.29 E-value=0.00012 Score=48.54 Aligned_cols=21 Identities=52% Similarity=0.759 Sum_probs=18.4
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|+||+|||++++.|++.+.
T Consensus 3 i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 3 IYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 469999999999999997763
No 289
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.28 E-value=0.00015 Score=42.88 Aligned_cols=18 Identities=56% Similarity=0.833 Sum_probs=15.8
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|+|+.||||||+..++.-
T Consensus 28 i~G~nGsGKSTllDAi~~ 45 (62)
T PF13555_consen 28 ITGPNGSGKSTLLDAIQT 45 (62)
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 579999999999988863
No 290
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.27 E-value=0.0036 Score=51.50 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=25.3
Q ss_pred CCCCCCCChHHHHHHHHHhC-----C--CceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL-----K--IPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~--~~~i~~d~~~~~ 33 (203)
|.|++|+|||++++.++..+ + +.+++..++...
T Consensus 141 l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~ 180 (405)
T TIGR00362 141 IYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTND 180 (405)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHH
Confidence 57999999999999998765 3 446777766443
No 291
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.27 E-value=0.00015 Score=51.73 Aligned_cols=19 Identities=47% Similarity=0.669 Sum_probs=17.2
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|+||+||||||+.|.+|.-
T Consensus 34 itGPSG~GKStllk~va~L 52 (223)
T COG4619 34 ITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred EeCCCCccHHHHHHHHHhc
Confidence 6899999999999999953
No 292
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.26 E-value=0.00019 Score=57.55 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=26.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCce--echhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPL--IDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~--i~~d~~~~~ 33 (203)
|.||||+|||.+|+++++.+|+.+ ++..++...
T Consensus 153 L~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk 187 (413)
T PLN00020 153 IWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESE 187 (413)
T ss_pred eeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcC
Confidence 469999999999999999999775 555555543
No 293
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.26 E-value=0.0017 Score=52.91 Aligned_cols=33 Identities=36% Similarity=0.517 Sum_probs=25.8
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~~ 33 (203)
++|.-||||||-|-.||..| | .-++++|.+|-.
T Consensus 105 mvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpA 142 (451)
T COG0541 105 MVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPA 142 (451)
T ss_pred EEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChH
Confidence 46999999999999999877 3 446788877543
No 294
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.26 E-value=0.0015 Score=51.45 Aligned_cols=110 Identities=19% Similarity=0.223 Sum_probs=56.6
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|++||||||+++.|.+.+. ..++-..+..+-... .+..... . ... .. ..+.+.+.
T Consensus 137 I~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~--------~~~~v~~----~-~~~---~~--~~~~~~l~ 198 (299)
T TIGR02782 137 VVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCA--------APNVVQL----R-TSD---DA--ISMTRLLK 198 (299)
T ss_pred EECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCC--------CCCEEEE----E-ecC---CC--CCHHHHHH
Confidence 589999999999999987752 233333333332110 1110000 0 000 01 13445666
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhc
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGR 130 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R 130 (203)
..+.....+|+-|=....+..+.+..+.. |.+-.+--+++.+......|+..-
T Consensus 199 ~aLR~~pD~iivGEiR~~ea~~~l~a~~t--Gh~G~~tTiHa~~~~~ai~Rl~~l 251 (299)
T TIGR02782 199 ATLRLRPDRIIVGEVRGGEALDLLKAWNT--GHPGGIATIHANNAKAALDRLEQL 251 (299)
T ss_pred HHhcCCCCEEEEeccCCHHHHHHHHHHHc--CCCCeEEeeccCCHHHHHHHHHHH
Confidence 66777766766663333444444443332 333123344555556788898764
No 295
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.25 E-value=0.0015 Score=54.03 Aligned_cols=31 Identities=35% Similarity=0.543 Sum_probs=24.0
Q ss_pred CCCCCCCChHHHHHHHHHhC-------CCceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL-------KIPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-------~~~~i~~d~~~ 31 (203)
|.||+||||||.+..|+..+ .+.+++.|..+
T Consensus 226 ~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r 263 (424)
T PRK05703 226 LVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR 263 (424)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence 57999999999988887543 25578888764
No 296
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.24 E-value=0.00019 Score=59.23 Aligned_cols=26 Identities=38% Similarity=0.657 Sum_probs=22.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|.||||+|||++|+.++..++.+++.
T Consensus 222 L~GPPGTGKT~LAraIA~el~~~fi~ 247 (438)
T PTZ00361 222 LYGPPGTGKTLLAKAVANETSATFLR 247 (438)
T ss_pred EECCCCCCHHHHHHHHHHhhCCCEEE
Confidence 47999999999999999998876654
No 297
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.24 E-value=0.0052 Score=51.31 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=25.7
Q ss_pred CCCCCCCChHHHHHHHHHhC-----C--CceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL-----K--IPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~--~~~i~~d~~~~~ 33 (203)
|.|+||+|||++++.++..+ + +.+++..++...
T Consensus 153 l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~ 192 (450)
T PRK00149 153 IYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTND 192 (450)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 57999999999999999876 2 346777776543
No 298
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.24 E-value=0.0036 Score=50.77 Aligned_cols=32 Identities=28% Similarity=0.446 Sum_probs=26.1
Q ss_pred CCCCCCCChHHHHHHHHHhCC-------CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASALK-------IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-------~~~i~~d~~~~ 32 (203)
|.||.|+||||-...||.+|. +.+|.+|.+|-
T Consensus 208 LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI 246 (407)
T COG1419 208 LVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI 246 (407)
T ss_pred EECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh
Confidence 579999999998888887773 56799998853
No 299
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.23 E-value=0.0049 Score=51.30 Aligned_cols=32 Identities=28% Similarity=0.423 Sum_probs=24.7
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~ 32 (203)
|.|++|+|||++++.++..+ + +.+++.+.+..
T Consensus 146 L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~ 182 (445)
T PRK12422 146 LFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTE 182 (445)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHH
Confidence 57999999999999999765 2 45677766543
No 300
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.23 E-value=0.00015 Score=59.16 Aligned_cols=20 Identities=50% Similarity=0.800 Sum_probs=18.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+|++||+.|
T Consensus 268 IAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 268 IAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred EecCCCCChhHHHHHHHHHH
Confidence 47999999999999999887
No 301
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.23 E-value=0.00015 Score=53.71 Aligned_cols=17 Identities=41% Similarity=0.675 Sum_probs=15.7
Q ss_pred CCCCCCCChHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIA 17 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~ 17 (203)
|+||+||||||+.+-|-
T Consensus 33 iiGpSGSGKSTlLRclN 49 (240)
T COG1126 33 IIGPSGSGKSTLLRCLN 49 (240)
T ss_pred EECCCCCCHHHHHHHHH
Confidence 58999999999999985
No 302
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.23 E-value=0.00017 Score=60.05 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=23.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
||||+|+||||..+.|++.+|+.++.
T Consensus 115 ltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 115 LTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred EeCCCCCCchhHHHHHHHhhCceeee
Confidence 68999999999999999999987654
No 303
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.22 E-value=0.0022 Score=55.23 Aligned_cols=23 Identities=39% Similarity=0.551 Sum_probs=20.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+|++|+||||+|+.|++.+++.
T Consensus 51 ~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 51 LTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred EECCCCCCHHHHHHHHHHhhCcC
Confidence 58999999999999999998764
No 304
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.21 E-value=0.0028 Score=55.67 Aligned_cols=31 Identities=29% Similarity=0.526 Sum_probs=23.7
Q ss_pred CCCCCCCChHHHHHHHHHhC----C---CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL----K---IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~---~~~i~~d~~~ 31 (203)
|+||.||||||.+..|+..+ | +.++..|..+
T Consensus 190 lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 190 LVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred EECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 57999999999999998655 2 2366777654
No 305
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.21 E-value=0.00015 Score=52.37 Aligned_cols=30 Identities=40% Similarity=0.647 Sum_probs=23.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCC----c--eechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKI----P--LIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~----~--~i~~d~~ 30 (203)
++||+|+|||.+|+.|++.+.. + .+++..+
T Consensus 8 l~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~ 43 (171)
T PF07724_consen 8 LAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEY 43 (171)
T ss_dssp EESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGH
T ss_pred EECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcc
Confidence 5799999999999999999874 3 4555444
No 306
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.20 E-value=0.0013 Score=48.11 Aligned_cols=61 Identities=11% Similarity=0.048 Sum_probs=33.4
Q ss_pred HHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCC
Q 039424 71 WKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE 133 (203)
Q Consensus 71 ~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~ 133 (203)
.+.+...+.....+|+-+-....+....+. .+ ..|..-.+-.+++.+......|+......
T Consensus 90 ~~~l~~~lR~~pd~i~igEir~~ea~~~~~-a~-~tGh~g~~~T~Ha~s~~~~~~Rl~~~~~~ 150 (186)
T cd01130 90 ADLLRSALRMRPDRIIVGEVRGGEALDLLQ-AM-NTGHPGGMTTIHANSAEEALTRLELLPSN 150 (186)
T ss_pred HHHHHHHhccCCCEEEEEccCcHHHHHHHH-HH-hcCCCCceeeecCCCHHHHHHHHHHHHhh
Confidence 334445556666666666333344444333 33 23444234555556666789999987543
No 307
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.20 E-value=0.00016 Score=58.81 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=25.7
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~~ 31 (203)
|.|++||||||+++.|...+. ...|+.|+++
T Consensus 217 IsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 217 FSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred EECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 579999999999999987662 4568888875
No 308
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.20 E-value=0.00061 Score=53.27 Aligned_cols=31 Identities=32% Similarity=0.542 Sum_probs=24.2
Q ss_pred CCCCCCCChHHHHHHHHHhC----C---CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL----K---IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~---~~~i~~d~~~ 31 (203)
|+||+||||||.+..|+..+ | +.+|+.|..+
T Consensus 199 ~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 199 LVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 57999999999999998755 2 3467777653
No 309
>PRK06526 transposase; Provisional
Probab=97.20 E-value=0.0023 Score=49.28 Aligned_cols=32 Identities=25% Similarity=0.277 Sum_probs=22.7
Q ss_pred CCCCCCCChHHHHHHHHHhC---CC--ceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---KI--PLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~--~~i~~d~~~~ 32 (203)
|+||||+|||++|..|+... |+ .+++..++..
T Consensus 103 l~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~ 139 (254)
T PRK06526 103 FLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVA 139 (254)
T ss_pred EEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHH
Confidence 57999999999999997654 33 3444544433
No 310
>PHA03138 thymidine kinase; Provisional
Probab=97.19 E-value=0.0079 Score=47.75 Aligned_cols=24 Identities=4% Similarity=0.065 Sum_probs=18.4
Q ss_pred CeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 175 PKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 175 ~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
..+++|.++ ++++.+..+++....
T Consensus 294 ~~f~ld~~~--sp~~ca~~~~~~~p~ 317 (340)
T PHA03138 294 SCFVLSLDQ--TPQDAAIELCKLLPN 317 (340)
T ss_pred eEEEEeCCC--CHHHHHHHHHhhCcc
Confidence 567788888 888888888776543
No 311
>TIGR01223 Pmev_kin_anim phosphomevalonate kinase, animal type. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found. One is this type, found in animals. The other is the ERG8 type, found in plants and fungi (TIGR01219) and in Gram-positive bacteria (TIGR01220).
Probab=97.19 E-value=0.045 Score=39.45 Aligned_cols=123 Identities=9% Similarity=0.013 Sum_probs=60.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCC---ceechhhHhhhhhhhhhh--hhccCCCccccchHHHHHhhhh---hhhhHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKI---PLIDKDDVRDCTLSLQQT--LQKTTPHHQHATSAAAAASSLL---NDLSYDVIWK 72 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~---~~i~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~ 72 (203)
|+|-.+|||-|+|..|.+.++. .++......+..+..... +...-+..............|. ....+..+.+
T Consensus 4 isGKrksGKD~~a~~l~~~l~~~~~~~vriS~piK~~~A~~~gld~~~Ll~d~~YKE~~R~~mi~w~e~~r~~dp~~F~r 83 (182)
T TIGR01223 4 FSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGFFCR 83 (182)
T ss_pred EecCCCCChHHHHHHHHHhhccccceEEEecHHHHHHHHHHhChhHHHhcCCcccchhhhHHHHHHHHHHHhhCccHHHH
Confidence 5899999999999999988874 245554333322211111 1111111000000000111111 1112233333
Q ss_pred HHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHh
Q 039424 73 IASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEG 129 (203)
Q Consensus 73 ~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~ 129 (203)
.+...+. ...|||++... +.-.+.|+... |..++.|-+.+++ ++.++|--.
T Consensus 84 ~~~~~~~-~~v~iIsD~Rr-~~dv~~f~~~~---g~~~~~VRV~Ase-etR~~Rgw~ 134 (182)
T TIGR01223 84 KIVEGIS-QPIWLVSDTRR-VSDIQWFREAY---GAVTQTVRVVALE-QSRQQRGWV 134 (182)
T ss_pred HHHhccC-CCEEEEeCCCc-ccHHHHHHHHc---CCceEEEEEecCH-HHHHHHHHh
Confidence 3333333 34567776433 24455555443 6678899999765 577777643
No 312
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.19 E-value=0.0031 Score=47.97 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=21.2
Q ss_pred CCCCCCCChHHHHHHHHHhC----C--Cceechhh
Q 039424 1 MKGHPGTGKSTLADAIASAL----K--IPLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~--~~~i~~d~ 29 (203)
|+|+||+||||++..++... | ..+++.+.
T Consensus 18 I~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 18 IAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 57999999999998886543 3 44566543
No 313
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.00037 Score=59.78 Aligned_cols=32 Identities=44% Similarity=0.666 Sum_probs=26.0
Q ss_pred CCCCCCCChHHHHHHHHHhCC--CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASALK--IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~--~~~i~~d~~~~ 32 (203)
+.||||+|||++++.+|+.+| +..++.+=++.
T Consensus 355 LVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrD 388 (782)
T COG0466 355 LVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRD 388 (782)
T ss_pred EECCCCCCchhHHHHHHHHhCCCEEEEecCcccc
Confidence 579999999999999999997 44566665543
No 314
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.19 E-value=0.00013 Score=55.46 Aligned_cols=20 Identities=55% Similarity=0.891 Sum_probs=17.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+||+||||+...|...|
T Consensus 34 iTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 34 ITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp EEE-TTSSHHHHHHHHHHHH
T ss_pred eeCCCCCcHHHHHHHHHHHH
Confidence 58999999999999998776
No 315
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=97.18 E-value=0.008 Score=46.32 Aligned_cols=106 Identities=13% Similarity=0.209 Sum_probs=67.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|.|..||||..+.+.|...++-..+..-.+. .|.. .+..++.+++.....=..
T Consensus 61 ~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~-------------~Pt~--------------eE~~~p~lWRfw~~lP~~ 113 (264)
T TIGR03709 61 LQAMDAAGKDGTIRHVMSGVNPQGCQVTSFK-------------APSA--------------EELDHDFLWRIHKALPER 113 (264)
T ss_pred EECCCCCCchHHHHHHHHhcCCCeeEEEeCC-------------CCCH--------------HHHcCchHHHHHHhCCCC
Confidence 4699999999999999998864444433331 1110 012334455555554566
Q ss_pred CCcEEEeCCCCc-------------hH------hHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCC
Q 039424 81 GVSVVVDSPLSR-------------RA------HLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEG 134 (203)
Q Consensus 81 ~~~vIid~~~~~-------------~~------~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~ 134 (203)
|...|.|++-.. .+ ....|.+++...|+-++-++|+.+- ++..+|+..|..++
T Consensus 114 G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKffLhIsk-~eQ~kRl~~r~~~p 185 (264)
T TIGR03709 114 GEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFERYLTENGTTILKFFLHISK-EEQKKRFLARLDDP 185 (264)
T ss_pred CeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCcEEEEEEEeCCH-HHHHHHHHHHhcCC
Confidence 777777773111 11 2224455666778888999999765 58999999997665
No 316
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.18 E-value=0.011 Score=49.16 Aligned_cols=33 Identities=21% Similarity=0.380 Sum_probs=25.9
Q ss_pred CCCCCCCChHHHHHHHHHhC-------CCceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL-------KIPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-------~~~~i~~d~~~~~ 33 (203)
|.|+||+|||++++.++..+ .+.+++..++...
T Consensus 135 lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~ 174 (440)
T PRK14088 135 IYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND 174 (440)
T ss_pred EEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 57999999999999998764 2456788776544
No 317
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.17 E-value=0.00022 Score=55.13 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.1
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|+|++||||||+++.++..+.
T Consensus 48 l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 48 ITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred EEcCCCCCHHHHHHHHHHhcC
Confidence 579999999999999998875
No 318
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.17 E-value=0.0043 Score=53.25 Aligned_cols=33 Identities=21% Similarity=0.442 Sum_probs=26.1
Q ss_pred CCCCCCCChHHHHHHHHHhC-------CCceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL-------KIPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-------~~~~i~~d~~~~~ 33 (203)
|.|++|+|||.++..++..+ .+.+++..++...
T Consensus 319 LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~e 358 (617)
T PRK14086 319 IYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNE 358 (617)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHH
Confidence 57999999999999998764 2467888777544
No 319
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.16 E-value=0.00023 Score=53.69 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=24.9
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~~i~~d~~~ 31 (203)
|+|++|+|||++++.+++.. .+.+++...+.
T Consensus 47 l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~ 82 (227)
T PRK08903 47 LWGEAGSGRSHLLQALVADASYGGRNARYLDAASPL 82 (227)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhH
Confidence 57999999999999998775 45677776653
No 320
>COG3911 Predicted ATPase [General function prediction only]
Probab=97.16 E-value=0.0031 Score=43.98 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=18.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+|.||+||||+...|+. -|+.
T Consensus 14 ltGgpGaGKTtLL~aLa~-~Gfa 35 (183)
T COG3911 14 LTGGPGAGKTTLLAALAR-AGFA 35 (183)
T ss_pred EeCCCCCcHHHHHHHHHH-cCce
Confidence 589999999999999985 4643
No 321
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.16 E-value=0.0016 Score=58.04 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=20.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|.|++|+||||+|+.|++.|++.
T Consensus 42 f~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 42 FSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred EECCCCCCHHHHHHHHHHHhCcc
Confidence 57999999999999999999753
No 322
>PRK09183 transposase/IS protein; Provisional
Probab=97.16 E-value=0.0038 Score=48.18 Aligned_cols=31 Identities=26% Similarity=0.383 Sum_probs=22.2
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~ 31 (203)
|.|+||+|||+++..|+... | +.+++..++.
T Consensus 107 l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~ 142 (259)
T PRK09183 107 LLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLL 142 (259)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHH
Confidence 57999999999999997553 4 3345555443
No 323
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.16 E-value=0.00017 Score=57.40 Aligned_cols=29 Identities=34% Similarity=0.646 Sum_probs=22.2
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--Cceechhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~ 29 (203)
|+|+|||||||++..|...+ | +.+++.|.
T Consensus 61 i~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 61 ITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 58999999999999887665 3 44566654
No 324
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.00092 Score=56.43 Aligned_cols=30 Identities=37% Similarity=0.533 Sum_probs=25.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|.||||+|||.+|+.++...++++++.+..
T Consensus 281 l~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 281 LYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred EECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 579999999999999999888888776544
No 325
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.14 E-value=0.005 Score=53.34 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=20.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+|++|+||||+|+.|++.++..
T Consensus 43 f~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 43 FSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred EECCCCCCHHHHHHHHHHhhhhc
Confidence 58999999999999999998763
No 326
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.13 E-value=0.00021 Score=53.66 Aligned_cols=19 Identities=47% Similarity=0.704 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+++.|+.-
T Consensus 38 ivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 38 IVGESGSGKSTLARLLAGL 56 (252)
T ss_pred EEcCCCCCHHHHHHHHhcc
Confidence 5799999999999999843
No 327
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.11 E-value=0.0019 Score=49.96 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=56.0
Q ss_pred CCCCCCCChHHHHHHHHHhCC---CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK---IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQ 77 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~---~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (203)
|+|++||||||+.+.+...+. ..++...+-.+...+ .. ..-.+....-..+.+.+...
T Consensus 85 isG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~--~~-----------------~q~~v~~~~~~~~~~~l~~~ 145 (264)
T cd01129 85 VTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP--GI-----------------NQVQVNEKAGLTFARGLRAI 145 (264)
T ss_pred EECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC--Cc-----------------eEEEeCCcCCcCHHHHHHHH
Confidence 579999999999998866653 223443333221110 00 00000000001134455566
Q ss_pred hhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhc
Q 039424 78 LKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGR 130 (203)
Q Consensus 78 l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R 130 (203)
+..+..+|+-+-....+....+.+.+.. |.. ++--+++.+......|+..-
T Consensus 146 lR~~PD~i~vgEiR~~e~a~~~~~aa~t-Gh~-v~tTlHa~~~~~ai~Rl~~~ 196 (264)
T cd01129 146 LRQDPDIIMVGEIRDAETAEIAVQAALT-GHL-VLSTLHTNDAPGAITRLLDM 196 (264)
T ss_pred hccCCCEEEeccCCCHHHHHHHHHHHHc-CCc-EEEEeccCCHHHHHHHHHHh
Confidence 6777777777755554444444443332 332 34445556666788888754
No 328
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.11 E-value=0.0043 Score=53.64 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=21.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+||+|+||||+|+.||+.+++.
T Consensus 43 f~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 43 FSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred EECCCCCCHHHHHHHHHHHhCCC
Confidence 57999999999999999998774
No 329
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.11 E-value=0.00028 Score=54.67 Aligned_cols=20 Identities=50% Similarity=0.865 Sum_probs=18.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|||+|||||||+...|...|
T Consensus 56 ITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 56 ITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred ecCCCCCchHHHHHHHHHHH
Confidence 69999999999999998887
No 330
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.10 E-value=0.003 Score=54.18 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+|++|+||||+|+.|++.++..
T Consensus 40 f~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 40 FSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred EECCCCCCHHHHHHHHHHHhccc
Confidence 57999999999999999988753
No 331
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.10 E-value=0.00027 Score=48.02 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=19.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
+.|.-||||||++|.+++.+|..
T Consensus 20 L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 20 LSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp EEESTTSSHHHHHHHHHHHTT--
T ss_pred EECCCCCCHHHHHHHHHHHcCCC
Confidence 46999999999999999999864
No 332
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.10 E-value=0.0033 Score=52.65 Aligned_cols=106 Identities=11% Similarity=0.163 Sum_probs=67.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|.|..||||+++.+.|...++-..+..-.+. .|.. .+..+..++......-..
T Consensus 45 ~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~-------------~P~~--------------eE~~~~flwRfw~~lP~~ 97 (493)
T TIGR03708 45 IEGWDGAGKGETINLLNEWMDPRGIETHAFG-------------RPSD--------------EERERPPMWRFWRRLPPK 97 (493)
T ss_pred EeCCCCCChHHHHHHHHHHhCcCccEEEeCC-------------CCCH--------------HHhcCcHHHHHHHhCCCC
Confidence 4799999999999999998854333222221 1100 012334455555555566
Q ss_pred CCcEEEeCCCCc-------------hH------hHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCC
Q 039424 81 GVSVVVDSPLSR-------------RA------HLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEG 134 (203)
Q Consensus 81 ~~~vIid~~~~~-------------~~------~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~ 134 (203)
|...|.|.+-.. .+ ....|.+++...|+-++-++|+.+. ++..+|+..|..+|
T Consensus 98 G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~~L~~~G~~IlKffLhIsk-~EQ~kRl~~r~~~P 169 (493)
T TIGR03708 98 GKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFERMLADDGALILKFWLHLSK-KQQKERLKKLEKDP 169 (493)
T ss_pred CeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCH-HHHHHHHHHHhcCC
Confidence 777777773111 11 2224445666778889999999765 58999999997765
No 333
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.09 E-value=0.00039 Score=50.10 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=21.3
Q ss_pred CCCCCCCChHHHHHHHHHhCC--Cceech
Q 039424 1 MKGHPGTGKSTLADAIASALK--IPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~--~~~i~~ 27 (203)
|+|+|||||||+|..++...+ ..++.+
T Consensus 4 i~G~~~sGKS~~a~~~~~~~~~~~~y~at 32 (169)
T cd00544 4 VTGGARSGKSRFAERLAAELGGPVTYIAT 32 (169)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence 579999999999999997755 334444
No 334
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.08 E-value=0.00028 Score=52.19 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=18.3
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|+||+||||||+...|...+.
T Consensus 6 I~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 6 VTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EECCCCCCHHHHHHHHHHHhh
Confidence 589999999999998887764
No 335
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.08 E-value=0.00036 Score=50.74 Aligned_cols=31 Identities=39% Similarity=0.595 Sum_probs=22.9
Q ss_pred CCCCCCCChHHHHHHHHHhC----CCceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL----KIPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~~~~i~~d~~~ 31 (203)
+.|||||||||+...+.+.+ ...+|-.|-+.
T Consensus 18 v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t 52 (202)
T COG0378 18 VGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT 52 (202)
T ss_pred ecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec
Confidence 46999999999977765554 56677766553
No 336
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.08 E-value=0.0031 Score=50.06 Aligned_cols=29 Identities=28% Similarity=0.378 Sum_probs=21.1
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--Cceechhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~ 29 (203)
|.|+|||||||+|-.++... | +.+|++..
T Consensus 60 I~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~ 93 (321)
T TIGR02012 60 IYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH 93 (321)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence 57999999999988876543 2 34666643
No 337
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.08 E-value=0.00033 Score=49.47 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+||+||||++..++...
T Consensus 4 i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 4 VFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred EeCCCCCCHHHHHHHHHHHH
Confidence 57999999999999998765
No 338
>CHL00176 ftsH cell division protein; Validated
Probab=97.07 E-value=0.00034 Score=60.52 Aligned_cols=27 Identities=44% Similarity=0.759 Sum_probs=23.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+|||++|+.+|...+.+++..
T Consensus 221 L~GPpGTGKT~LAralA~e~~~p~i~i 247 (638)
T CHL00176 221 LVGPPGTGKTLLAKAIAGEAEVPFFSI 247 (638)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 479999999999999999998887654
No 339
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.06 E-value=0.0003 Score=51.07 Aligned_cols=20 Identities=40% Similarity=0.534 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
++||+||||||+.|.|....
T Consensus 33 l~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 33 LTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred EECCCCCCHHHHHHHHHhhh
Confidence 58999999999999997655
No 340
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0033 Score=52.57 Aligned_cols=27 Identities=41% Similarity=0.690 Sum_probs=24.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
++||||.|||-+|+++|-.-|++|+.+
T Consensus 342 LvGPPGTGKTlLARAvAGEA~VPFF~~ 368 (752)
T KOG0734|consen 342 LVGPPGTGKTLLARAVAGEAGVPFFYA 368 (752)
T ss_pred EeCCCCCchhHHHHHhhcccCCCeEec
Confidence 589999999999999999999987655
No 341
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.06 E-value=0.013 Score=50.62 Aligned_cols=22 Identities=41% Similarity=0.625 Sum_probs=20.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCC
Q 039424 1 MKGHPGTGKSTLADAIASALKI 22 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~ 22 (203)
|.|+||+||||+|+.|++.++.
T Consensus 43 f~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 43 FSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred EECCCCCCHHHHHHHHHHhccc
Confidence 5799999999999999999875
No 342
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.05 E-value=0.00029 Score=50.84 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=18.6
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|+|++||||||+++.|...+.
T Consensus 11 ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 11 IAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred EECCCCChHHHHHHHHHHHHh
Confidence 579999999999999987764
No 343
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.05 E-value=0.0064 Score=52.50 Aligned_cols=22 Identities=32% Similarity=0.598 Sum_probs=20.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCC
Q 039424 1 MKGHPGTGKSTLADAIASALKI 22 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~ 22 (203)
|+|++|+||||+|+.|++.+++
T Consensus 43 f~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 43 FTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred EECCCCCCHHHHHHHHHHHhcC
Confidence 5899999999999999999875
No 344
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.04 E-value=0.007 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCC
Q 039424 1 MKGHPGTGKSTLADAIASALKI 22 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~ 22 (203)
|+|++|+||||+++.|++.++.
T Consensus 43 f~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 43 FTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred EECCCCCCHHHHHHHHHHHhcC
Confidence 5799999999999999998864
No 345
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=97.02 E-value=0.00044 Score=55.30 Aligned_cols=24 Identities=50% Similarity=0.901 Sum_probs=21.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCce
Q 039424 1 MKGHPGTGKSTLADAIASALKIPL 24 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~ 24 (203)
|.|+||+|||++++.+|+.++.++
T Consensus 48 l~G~PG~gKT~la~~lA~~l~~~~ 71 (329)
T COG0714 48 LEGPPGVGKTLLARALARALGLPF 71 (329)
T ss_pred EECCCCccHHHHHHHHHHHhCCCe
Confidence 479999999999999999998654
No 346
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.01 E-value=0.0022 Score=48.98 Aligned_cols=33 Identities=39% Similarity=0.662 Sum_probs=25.4
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~~ 33 (203)
|.|+||+|||+++..++..+ | +.+++..++...
T Consensus 104 l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~ 141 (244)
T PRK07952 104 FSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA 141 (244)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH
Confidence 57999999999999999887 3 345666666543
No 347
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.00032 Score=52.35 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=24.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|.||.||||||+|..|+-.-+|.+.+.+-+
T Consensus 35 iMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~ 64 (251)
T COG0396 35 IMGPNGSGKSTLAYTIMGHPKYEVTEGEIL 64 (251)
T ss_pred EECCCCCCHHHHHHHHhCCCCceEecceEE
Confidence 469999999999999998777776655433
No 348
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.00 E-value=0.009 Score=49.85 Aligned_cols=33 Identities=24% Similarity=0.437 Sum_probs=25.6
Q ss_pred CCCCCCCChHHHHHHHHHhC-------CCceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL-------KIPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-------~~~~i~~d~~~~~ 33 (203)
|.|++|+|||++++.++..+ .+.++++.++...
T Consensus 146 i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~ 185 (450)
T PRK14087 146 IYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARK 185 (450)
T ss_pred EECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 57999999999999998743 2457787777554
No 349
>PRK08181 transposase; Validated
Probab=96.98 E-value=0.0047 Score=47.91 Aligned_cols=34 Identities=38% Similarity=0.484 Sum_probs=26.2
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRDCT 34 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~~~ 34 (203)
|.|+||+|||.++..++... | +.++++.++...+
T Consensus 111 l~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l 149 (269)
T PRK08181 111 LFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKL 149 (269)
T ss_pred EEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHH
Confidence 57999999999999998643 4 5567777776543
No 350
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.00041 Score=60.29 Aligned_cols=27 Identities=44% Similarity=0.736 Sum_probs=24.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|+||||+|||-+||++|.+-|+||++.
T Consensus 349 L~GPPGTGKTLLAKAiAGEAgVPF~sv 375 (774)
T KOG0731|consen 349 LVGPPGTGKTLLAKAIAGEAGVPFFSV 375 (774)
T ss_pred EECCCCCcHHHHHHHHhcccCCceeee
Confidence 589999999999999999999998765
No 351
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.98 E-value=0.00038 Score=52.24 Aligned_cols=18 Identities=39% Similarity=0.682 Sum_probs=16.2
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.||+||||||+...|+-
T Consensus 36 I~GpSGSGKSTLLniig~ 53 (226)
T COG1136 36 IVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 579999999999999973
No 352
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.00054 Score=52.75 Aligned_cols=23 Identities=48% Similarity=0.726 Sum_probs=20.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
+.||||-||||+|..+|..+|..
T Consensus 57 l~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 57 LFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred eeCCCCCcHHHHHHHHHHHhcCC
Confidence 46999999999999999999754
No 353
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.97 E-value=0.00044 Score=58.11 Aligned_cols=23 Identities=39% Similarity=0.671 Sum_probs=20.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|.||||+|||++++.+++.++..
T Consensus 221 LyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 221 LYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred EECCCCCcHHHHHHHHHHhhccc
Confidence 57999999999999999988644
No 354
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.96 E-value=0.00051 Score=60.70 Aligned_cols=27 Identities=41% Similarity=0.582 Sum_probs=23.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+|||++|+.+|..++.+++..
T Consensus 492 L~GppGtGKT~lakalA~e~~~~fi~v 518 (733)
T TIGR01243 492 LFGPPGTGKTLLAKAVATESGANFIAV 518 (733)
T ss_pred EECCCCCCHHHHHHHHHHhcCCCEEEE
Confidence 469999999999999999998777654
No 355
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.95 E-value=0.00046 Score=60.78 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=24.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee--chhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI--DKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i--~~d~~ 30 (203)
|+||||+|||++|+.||+.++.+++ ++..+
T Consensus 493 f~GP~GvGKT~lAk~LA~~l~~~~i~id~se~ 524 (758)
T PRK11034 493 FAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcEEeechhh
Confidence 5799999999999999999986654 44443
No 356
>PLN03025 replication factor C subunit; Provisional
Probab=96.94 E-value=0.00043 Score=55.11 Aligned_cols=20 Identities=50% Similarity=0.723 Sum_probs=18.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.||||+||||+++.+++.+
T Consensus 39 l~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 39 LSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999886
No 357
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.0026 Score=51.06 Aligned_cols=108 Identities=18% Similarity=0.229 Sum_probs=58.0
Q ss_pred CCCCCCCChHHHHHHHHHhC---CC--ceechhhHhhhhhh-hhhh-hhccCCCccccchHHHHHhhhhhhhhHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---KI--PLIDKDDVRDCTLS-LQQT-LQKTTPHHQHATSAAAAASSLLNDLSYDVIWKI 73 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~--~~i~~d~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 73 (203)
+.|.-||||||.|..||..| || ..+..|.++...++ +.++ .....|.+ ...-...+..+..+.
T Consensus 106 fVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~y----------gsyte~dpv~ia~eg 175 (483)
T KOG0780|consen 106 FVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFY----------GSYTEADPVKIASEG 175 (483)
T ss_pred EEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeE----------ecccccchHHHHHHH
Confidence 46999999999999999877 44 36778888655332 3332 11112221 111111122333444
Q ss_pred HHHHhhCC-CcEEEeCCCCch---HhHHHHHHHHHhhCCeEEEEEecCC
Q 039424 74 ASTQLKLG-VSVVVDSPLSRR---AHLEKLVKLAGEMRAGLVIVECKPS 118 (203)
Q Consensus 74 ~~~~l~~~-~~vIid~~~~~~---~~~~~~~~~~~~~~~~~~~v~l~~~ 118 (203)
+...-.++ ..+|+|.+-... +..+++.+..+......++++++++
T Consensus 176 v~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas 224 (483)
T KOG0780|consen 176 VDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS 224 (483)
T ss_pred HHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc
Confidence 44444444 458888854333 3445555555554544455555543
No 358
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.94 E-value=0.0069 Score=51.13 Aligned_cols=31 Identities=29% Similarity=0.546 Sum_probs=24.0
Q ss_pred CCCCCCCChHHHHHHHHHhC-------CCceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL-------KIPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-------~~~~i~~d~~~ 31 (203)
|+|++|+||||++..|+..+ .+.+++.|..+
T Consensus 355 LVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 355 LVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 57999999999999998653 24567887653
No 359
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.94 E-value=0.00043 Score=49.15 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||++..|...+
T Consensus 4 i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 4 IVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999998865
No 360
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.94 E-value=0.0035 Score=54.46 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+|++|+||||+|+.|++.+++.
T Consensus 43 f~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 43 LTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred EECCCCCcHHHHHHHHHHHhccc
Confidence 58999999999999999988754
No 361
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.93 E-value=0.00051 Score=50.90 Aligned_cols=20 Identities=40% Similarity=0.713 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.+...+
T Consensus 6 i~G~~GsGKTTll~~l~~~l 25 (199)
T TIGR00101 6 VAGPVGSGKTALIEALTRAL 25 (199)
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 57999999999999998775
No 362
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.92 E-value=0.00035 Score=55.56 Aligned_cols=18 Identities=50% Similarity=0.663 Sum_probs=16.4
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.||+||||||+.+.+|-
T Consensus 34 llGPSGcGKSTlLr~IAG 51 (338)
T COG3839 34 LLGPSGCGKSTLLRMIAG 51 (338)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 469999999999999984
No 363
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.92 E-value=0.00036 Score=52.36 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=22.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~ 31 (203)
|.|+||+||||+|+.|+. ...+++.|.-.
T Consensus 17 iyG~~G~GKtt~a~~~~~--~~~~~~~d~~~ 45 (220)
T TIGR01618 17 IYGKPGTGKTSTIKYLPG--KTLVLSFDMSS 45 (220)
T ss_pred EECCCCCCHHHHHHhcCC--CCEEEeccccc
Confidence 579999999999999963 35567766643
No 364
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.042 Score=44.47 Aligned_cols=30 Identities=37% Similarity=0.623 Sum_probs=24.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCce--echhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPL--IDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~--i~~d~~ 30 (203)
+.||||+|||-+||++|...|.+| |++..+
T Consensus 250 m~GPPGTGKTlLAKAvATEc~tTFFNVSsstl 281 (491)
T KOG0738|consen 250 MVGPPGTGKTLLAKAVATECGTTFFNVSSSTL 281 (491)
T ss_pred eeCCCCCcHHHHHHHHHHhhcCeEEEechhhh
Confidence 479999999999999999998776 444444
No 365
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.91 E-value=0.0084 Score=46.45 Aligned_cols=28 Identities=25% Similarity=0.364 Sum_probs=20.9
Q ss_pred CCCCCCCChHHHHHHHHHhC----C--Cceechh
Q 039424 1 MKGHPGTGKSTLADAIASAL----K--IPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~--~~~i~~d 28 (203)
|.|+||+||||++..++..+ | +.+++.+
T Consensus 35 i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 35 LTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 57999999999998886553 4 3466664
No 366
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00061 Score=53.34 Aligned_cols=29 Identities=34% Similarity=0.618 Sum_probs=25.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~ 29 (203)
+.||.|||||-+|+-||+.+++||--+|.
T Consensus 102 LiGPTGsGKTlLAqTLAk~LnVPFaiADA 130 (408)
T COG1219 102 LIGPTGSGKTLLAQTLAKILNVPFAIADA 130 (408)
T ss_pred EECCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence 47999999999999999999999876664
No 367
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.91 E-value=0.0058 Score=48.60 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=21.1
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--Cceechh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d 28 (203)
|.|+|||||||+|-.++... | +.+|++.
T Consensus 60 I~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 60 IYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 57999999999999987443 3 4466664
No 368
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.91 E-value=0.0051 Score=49.89 Aligned_cols=114 Identities=17% Similarity=0.123 Sum_probs=58.6
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|++||||||..+.|.+.++ ..++...+..+.... .+.... ......... ....+.+.+.
T Consensus 154 I~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~--------~~~~~~-----~~~q~evg~-~~~~~~~~l~ 219 (372)
T TIGR02525 154 ICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILG--------SPDDLL-----PPAQSQIGR-DVDSFANGIR 219 (372)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccC--------CCceee-----cccccccCC-CccCHHHHHH
Confidence 589999999999999987662 234444444332211 000000 000000000 0012334556
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhc
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGR 130 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R 130 (203)
..+.+...+|+-|=....+..+.+.+.+. -|.. ++--+++.+......|+..-
T Consensus 220 ~aLR~~PD~I~vGEiRd~et~~~al~aa~-TGH~-v~tTlHa~s~~~ai~Rl~~~ 272 (372)
T TIGR02525 220 LALRRAPKIIGVGEIRDLETFQAAVLAGQ-SGHF-CLGTLHVKSPGEAISRCLQM 272 (372)
T ss_pred HhhccCCCEEeeCCCCCHHHHHHHHHHHh-cCCc-EEEeeCCCCHHHHHHHHHHh
Confidence 66777777877774444454444333332 2433 33445555556788888764
No 369
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.90 E-value=0.00052 Score=53.47 Aligned_cols=28 Identities=32% Similarity=0.531 Sum_probs=21.3
Q ss_pred CCCCCCCChHHHHHHHHHhC----CCceechh
Q 039424 1 MKGHPGTGKSTLADAIASAL----KIPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~~~~i~~d 28 (203)
|+|+|||||||+...+...+ +..+|..|
T Consensus 109 l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD 140 (290)
T PRK10463 109 LVSSPGSGKTTLLTETLMRLKDSVPCAVIEGD 140 (290)
T ss_pred EECCCCCCHHHHHHHHHHHhccCCCEEEECCC
Confidence 57999999999998887765 34455544
No 370
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.90 E-value=0.0056 Score=43.02 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=26.5
Q ss_pred HHHHhhCCCcEEEeCCCCch------HhHHHHHHHHHhhCCeEEEEEec
Q 039424 74 ASTQLKLGVSVVVDSPLSRR------AHLEKLVKLAGEMRAGLVIVECK 116 (203)
Q Consensus 74 ~~~~l~~~~~vIid~~~~~~------~~~~~~~~~~~~~~~~~~~v~l~ 116 (203)
....+.+.+.+++|-++.+- ..+++........|+|.+.|.=+
T Consensus 146 ~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD 194 (213)
T COG4136 146 LRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHD 194 (213)
T ss_pred HHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecc
Confidence 33456778889999976542 33344444456678888766543
No 371
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.90 E-value=0.0005 Score=55.00 Aligned_cols=31 Identities=45% Similarity=0.774 Sum_probs=22.8
Q ss_pred CCCCCCCChHHHHHHHHHhCC--Cce--echhhHh
Q 039424 1 MKGHPGTGKSTLADAIASALK--IPL--IDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~--~~~--i~~d~~~ 31 (203)
|.||||+|||.+|..+|+.|| .|| ++...++
T Consensus 55 iaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 55 IAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp EEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred EeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 479999999999999999997 555 4445443
No 372
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.00048 Score=52.06 Aligned_cols=20 Identities=45% Similarity=0.518 Sum_probs=17.4
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.||+||||||+.+.+|--.
T Consensus 34 ilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 34 ILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998544
No 373
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.89 E-value=0.0055 Score=52.73 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=20.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+|++|+||||+|+.|++.++..
T Consensus 43 f~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 43 FTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred EECCCCCCHHHHHHHHHHhhcCC
Confidence 58999999999999999998653
No 374
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.00062 Score=57.55 Aligned_cols=27 Identities=37% Similarity=0.565 Sum_probs=24.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
++||||+|||-+||++|..-|+.||+.
T Consensus 550 L~GPPGCGKTLlAKAVANEag~NFisV 576 (802)
T KOG0733|consen 550 LCGPPGCGKTLLAKAVANEAGANFISV 576 (802)
T ss_pred EeCCCCccHHHHHHHHhhhccCceEee
Confidence 589999999999999999998888776
No 375
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.88 E-value=0.00062 Score=60.50 Aligned_cols=25 Identities=40% Similarity=0.740 Sum_probs=22.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI 25 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i 25 (203)
|.||||+||||+|+.|++.++.+++
T Consensus 352 l~GppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 352 LVGPPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred EECCCCCCHHHHHHHHHHHhcCCeE
Confidence 4799999999999999999986664
No 376
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=96.88 E-value=0.0096 Score=52.13 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=20.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+||+|+||||+|+.||+.+...
T Consensus 45 F~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 45 FSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred EECCCCCcHHHHHHHHHHHhccc
Confidence 57999999999999999988654
No 377
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.87 E-value=0.00051 Score=47.80 Aligned_cols=19 Identities=42% Similarity=0.721 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|++||||||+++.|...
T Consensus 6 liG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 6 LIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred EECCCCCCHHHHHHHHcCC
Confidence 5799999999999999753
No 378
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.87 E-value=0.003 Score=50.20 Aligned_cols=110 Identities=17% Similarity=0.204 Sum_probs=55.8
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|++||||||+.+.|..... ..++...+..+-... .+... .. ..-.... +.+.+.
T Consensus 149 I~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~--------~~n~v------~l--~~~~~~~---~~~lv~ 209 (323)
T PRK13833 149 ISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCA--------AENAV------AL--HTSDTVD---MARLLK 209 (323)
T ss_pred EECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccC--------CCCEE------Ee--ccCCCcC---HHHHHH
Confidence 589999999999999987652 223333332221100 01000 00 0000111 334555
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcC
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRG 131 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~ 131 (203)
..+.....+|+=|=....+....+..+.. |.+-.+--+++........|+..-.
T Consensus 210 ~aLR~~PD~IivGEiRg~ea~~~l~a~~t--Gh~G~itTiHA~s~~~a~~Rl~~l~ 263 (323)
T PRK13833 210 STMRLRPDRIIVGEVRDGAALTLLKAWNT--GHPGGVTTIHSNTAMSALRRLEQLT 263 (323)
T ss_pred HHhCCCCCEEEEeecCCHHHHHHHHHHcC--CCCceEEEECCCCHHHHHHHHHHHh
Confidence 66777766777763333444454444432 3321234445555567889987653
No 379
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.87 E-value=0.00043 Score=55.36 Aligned_cols=18 Identities=44% Similarity=0.650 Sum_probs=16.2
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|-||+||||||+.+.||-
T Consensus 36 lLGPSGcGKTTlLR~IAG 53 (352)
T COG3842 36 LLGPSGCGKTTLLRMIAG 53 (352)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 459999999999999994
No 380
>PRK10646 ADP-binding protein; Provisional
Probab=96.87 E-value=0.00076 Score=47.56 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
+.|.-||||||++|.|++.+|+.
T Consensus 33 L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 33 LYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred EECCCCCCHHHHHHHHHHHcCCC
Confidence 47999999999999999999863
No 381
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.86 E-value=0.00046 Score=51.81 Aligned_cols=20 Identities=45% Similarity=0.773 Sum_probs=14.1
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.||||+||||+...+...+
T Consensus 22 i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 22 IQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EE-STTSSHHHHHHHHHHHH
T ss_pred EECCCCCChHHHHHHHHHHh
Confidence 47999999997666665554
No 382
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.86 E-value=0.01 Score=51.44 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+|++|+||||+|+.|++.++..
T Consensus 43 f~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 43 FTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred EECCCCCChHHHHHHHHHHhcCC
Confidence 57999999999999999998653
No 383
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.85 E-value=0.00056 Score=48.76 Aligned_cols=20 Identities=40% Similarity=0.675 Sum_probs=18.4
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||++..|...+
T Consensus 6 i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 6 FVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999876
No 384
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.85 E-value=0.00054 Score=50.62 Aligned_cols=21 Identities=48% Similarity=0.740 Sum_probs=17.1
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|+||+|||++|+.+..-+.
T Consensus 27 l~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 27 LIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp EES-CCCTHHHHHHHHHHCS-
T ss_pred EECCCCCCHHHHHHHHHHhCC
Confidence 479999999999999997763
No 385
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.85 E-value=0.00058 Score=60.38 Aligned_cols=26 Identities=42% Similarity=0.627 Sum_probs=22.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|.|+||+||||+++.++..++.+++.
T Consensus 217 L~GppGtGKT~laraia~~~~~~~i~ 242 (733)
T TIGR01243 217 LYGPPGTGKTLLAKAVANEAGAYFIS 242 (733)
T ss_pred EECCCCCChHHHHHHHHHHhCCeEEE
Confidence 57999999999999999999876653
No 386
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.85 E-value=0.00053 Score=49.72 Aligned_cols=20 Identities=35% Similarity=0.694 Sum_probs=15.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++|+||||+.+.+.+.+
T Consensus 29 l~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 29 LTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp E-B-TTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999887766
No 387
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0037 Score=48.73 Aligned_cols=35 Identities=34% Similarity=0.524 Sum_probs=27.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCce--echhhHhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPL--IDKDDVRDCTL 35 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~--i~~d~~~~~~~ 35 (203)
+-||||.|||.+|+++|..-+..| |++.++...++
T Consensus 171 LyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 171 LYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred EeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 469999999999999998888655 56667765544
No 388
>PRK13695 putative NTPase; Provisional
Probab=96.84 E-value=0.00057 Score=49.43 Aligned_cols=20 Identities=50% Similarity=0.753 Sum_probs=17.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+++.++..+
T Consensus 5 ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 5 ITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 58999999999999987664
No 389
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.84 E-value=0.0024 Score=56.01 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.1
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|.+||||||++|.|...|
T Consensus 504 IvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 504 IVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999998766
No 390
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.00076 Score=53.53 Aligned_cols=33 Identities=33% Similarity=0.526 Sum_probs=26.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech--hhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK--DDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~--d~~~~~ 33 (203)
+-||||+|||-+||++|.+.++.||.. ..+.+.
T Consensus 190 LYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqK 224 (406)
T COG1222 190 LYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK 224 (406)
T ss_pred eeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHH
Confidence 469999999999999999998877543 444443
No 391
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.83 E-value=0.0032 Score=49.91 Aligned_cols=21 Identities=24% Similarity=0.600 Sum_probs=18.4
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|+|++||||||+.+.|...+.
T Consensus 149 i~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 149 ISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred EECCCCCCHHHHHHHHHccCC
Confidence 579999999999999987763
No 392
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.83 E-value=0.00057 Score=51.20 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 35 l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 35 IVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EEcCCCCCHHHHHHHHhCCc
Confidence 57999999999999998655
No 393
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.83 E-value=0.025 Score=44.26 Aligned_cols=88 Identities=13% Similarity=0.140 Sum_probs=51.7
Q ss_pred CCCCCCCChHHHHHHHHHhCC----CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK----IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAST 76 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (203)
++||.||||||-...+-+.+| ...+...|.++.++..+.. -+.+.+++. .-..+...+..
T Consensus 130 VTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skks---------------lI~QREvG~-dT~sF~~aLra 193 (353)
T COG2805 130 VTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKS---------------LINQREVGR-DTLSFANALRA 193 (353)
T ss_pred EeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHh---------------hhhHHHhcc-cHHHHHHHHHH
Confidence 589999999998777777775 4456666666665532211 111222211 11223445666
Q ss_pred HhhCCCcEEEeCCCCchHhHHHHHHHHH
Q 039424 77 QLKLGVSVVVDSPLSRRAHLEKLVKLAG 104 (203)
Q Consensus 77 ~l~~~~~vIid~~~~~~~~~~~~~~~~~ 104 (203)
.+.+...||+-|-....+........+.
T Consensus 194 ALReDPDVIlvGEmRD~ETi~~ALtAAE 221 (353)
T COG2805 194 ALREDPDVILVGEMRDLETIRLALTAAE 221 (353)
T ss_pred HhhcCCCEEEEeccccHHHHHHHHHHHh
Confidence 6777777888886555555555444443
No 394
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.83 E-value=0.015 Score=46.06 Aligned_cols=34 Identities=32% Similarity=0.373 Sum_probs=26.4
Q ss_pred CCCCCCCChHHHHHHHHHhC---CC--ceechhhHhhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---KI--PLIDKDDVRDCT 34 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~--~~i~~d~~~~~~ 34 (203)
|.|++|+|||.++..++..+ |+ .++...++...+
T Consensus 161 L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 161 LYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 47999999999999999887 43 456777765543
No 395
>PF01712 dNK: Deoxynucleoside kinase; InterPro: IPR002624 This family consists of various deoxynucleoside kinases including cytidine (2.7.1.74 from EC), guanosine (2.7.1.113 from EC), adenosine (2.7.1.76 from EC) and thymidine kinase (2.7.1.21 from EC, which also phosphorylates deoxyuridine and deoxycytosine. These enzymes catalyse the production of deoxynucleotide 5'-monophosphate from a deoxynucleoside, using ATP and yielding ADP in the process.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006139 nucleobase-containing compound metabolic process; PDB: 2JAS_B 2JAT_B 2JAQ_A 2VP4_D 1ZMX_F 1ZM7_C 1OE0_B 2VP9_C 2VPP_B 2VP6_G ....
Probab=96.82 E-value=0.0015 Score=45.93 Aligned_cols=83 Identities=27% Similarity=0.315 Sum_probs=46.8
Q ss_pred HHHhhCC-eEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHh-hhhcCCCCCCCCCCCeEEE
Q 039424 102 LAGEMRA-GLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLL-EGYCGCTEYDVGDVPKLTV 179 (203)
Q Consensus 102 ~~~~~~~-~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~i 179 (203)
+...... |..+|+|.++++ +|.+|+..|++.. + ..-+.+-+.... +.|......+ ...+.++|
T Consensus 60 l~~~~~~~pdl~IYL~~~~e-~~~~RI~kRgR~~----------E---~~i~~~Yl~~L~~~~y~~~~~~~-~~~~vl~i 124 (146)
T PF01712_consen 60 LIEEIPKSPDLIIYLDASPE-TCLERIKKRGREE----------E---KNIPLEYLERLHEEAYEDWLKKY-DSTPVLVI 124 (146)
T ss_dssp HHHHCCHH-SEEEEEE--HH-HHHHHHHHCTTGG----------G---TTS-HHHHHHHHHHHHCCHHSCC-TTTTGCEE
T ss_pred HHHHhhccCCeEEEEeCCHH-HHHHHHHHhCCch----------h---cCCCHHHHHHHhHHHHHHHHHhC-CCCceEEE
Confidence 3444455 678999998775 8999999998863 1 112233333333 2443222211 13467899
Q ss_pred ecCCCCChHHHHHHHHHHHhc
Q 039424 180 DTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 180 d~~~~~~~~e~~~~i~~~i~~ 200 (203)
|++. .+..+....+...+..
T Consensus 125 d~~~-~d~~~~~~~~~~~~~~ 144 (146)
T PF01712_consen 125 DADN-LDFVENPEDIEQVINQ 144 (146)
T ss_dssp EECE-EECCSHHTTHHHHHCC
T ss_pred ECCc-cCcccCHHHHHHHHHh
Confidence 9987 5666666666655543
No 396
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.82 E-value=0.013 Score=45.55 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=24.0
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~~i~~d~~~ 31 (203)
|+|++|+||||++..|+..+ ...+++.|..+
T Consensus 80 ~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r 115 (270)
T PRK06731 80 LIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 115 (270)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence 57999999999999998765 24467777553
No 397
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.81 E-value=0.0005 Score=47.97 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=18.2
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+.+|||||+++.|...+
T Consensus 5 VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 5 VVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999998776
No 398
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.80 E-value=0.0048 Score=51.62 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=23.3
Q ss_pred CCCCCCCChHHHHHHHHHhC----C---CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASAL----K---IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~---~~~i~~d~~ 30 (203)
|.||.||||||.+..|+..+ | +.++..|..
T Consensus 261 LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~ 297 (484)
T PRK06995 261 LMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY 297 (484)
T ss_pred EECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence 57999999999999999765 2 335676664
No 399
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.80 E-value=0.00062 Score=49.93 Aligned_cols=20 Identities=40% Similarity=0.517 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 23 i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 23 LLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 400
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.80 E-value=0.00068 Score=55.86 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=19.1
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
+.|+||+||||+|+.|+..++
T Consensus 199 l~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 199 LQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred EECCCCCCHHHHHHHHHHHhc
Confidence 579999999999999998874
No 401
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.013 Score=48.33 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=17.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++|+||||+...|+..+
T Consensus 196 lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 196 LIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999998653
No 402
>PRK04296 thymidine kinase; Provisional
Probab=96.80 E-value=0.00058 Score=50.19 Aligned_cols=20 Identities=30% Similarity=0.165 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
++|+||+||||++..++.++
T Consensus 7 itG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 7 IYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EECCCCCHHHHHHHHHHHHH
Confidence 58999999999999998776
No 403
>PRK13768 GTPase; Provisional
Probab=96.79 E-value=0.00062 Score=52.35 Aligned_cols=30 Identities=30% Similarity=0.586 Sum_probs=22.6
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~ 30 (203)
+.|++||||||++..++..+ | ..+++.|.-
T Consensus 7 v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~~ 41 (253)
T PRK13768 7 FLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDPA 41 (253)
T ss_pred EECCCCccHHHHHHHHHHHHHhcCCceEEEECCCc
Confidence 47999999999999888666 3 346666643
No 404
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.79 E-value=0.00061 Score=51.00 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 34 i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 34 LVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999654
No 405
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.79 E-value=0.0071 Score=46.56 Aligned_cols=34 Identities=35% Similarity=0.502 Sum_probs=26.1
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRDCT 34 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~~~ 34 (203)
|.|+||+|||.+|.+++..+ | +.++..-++...+
T Consensus 110 l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 110 LLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 47999999999999998776 3 3467777776554
No 406
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.79 E-value=0.013 Score=51.93 Aligned_cols=20 Identities=35% Similarity=0.798 Sum_probs=18.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+|||++++.|++.+
T Consensus 208 L~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 208 LVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999886
No 407
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.79 E-value=0.00063 Score=50.37 Aligned_cols=17 Identities=41% Similarity=0.642 Sum_probs=15.5
Q ss_pred CCCCCCCChHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIA 17 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~ 17 (203)
|+||+||||||+.+.|=
T Consensus 38 lIGPSGcGKST~LR~lN 54 (253)
T COG1117 38 LIGPSGCGKSTLLRCLN 54 (253)
T ss_pred EECCCCcCHHHHHHHHH
Confidence 57999999999999985
No 408
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.78 E-value=0.0006 Score=57.76 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=18.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.||||+||||+++.|++.+
T Consensus 108 LvGPpG~GKSsLa~~la~~l 127 (644)
T PRK15455 108 LLGPVGGGKSSLAERLKSLM 127 (644)
T ss_pred EecCCCCCchHHHHHHHHHH
Confidence 57999999999999999876
No 409
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.78 E-value=0.0052 Score=52.60 Aligned_cols=23 Identities=35% Similarity=0.489 Sum_probs=20.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+|++|+||||+|+.|++.++..
T Consensus 43 f~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 43 FSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EECCCCCCHHHHHHHHHHhhccc
Confidence 57999999999999999998653
No 410
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.78 E-value=0.00064 Score=50.76 Aligned_cols=20 Identities=40% Similarity=0.499 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 32 i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 32 LVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999654
No 411
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.78 E-value=0.00045 Score=47.73 Aligned_cols=20 Identities=50% Similarity=0.702 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 16 i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 16 IVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp EEESTTSSHHHHHHHHTTSS
T ss_pred EEccCCCccccceeeecccc
Confidence 57999999999999998665
No 412
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.77 E-value=0.00069 Score=51.86 Aligned_cols=30 Identities=43% Similarity=0.636 Sum_probs=22.8
Q ss_pred CCCCCCCChHHHHHHHHHhCC----CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALK----IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~----~~~i~~d~~ 30 (203)
|.||.||||||+.|.|+.-+. -.+++..++
T Consensus 33 iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i 66 (258)
T COG1120 33 ILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI 66 (258)
T ss_pred EECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence 579999999999999997663 345555444
No 413
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.77 E-value=0.00067 Score=50.60 Aligned_cols=20 Identities=35% Similarity=0.546 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 30 i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 30 LLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999654
No 414
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.77 E-value=0.0071 Score=47.23 Aligned_cols=23 Identities=48% Similarity=0.621 Sum_probs=20.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
+-||||.|||+.|..++..++.+
T Consensus 62 FyGPpGTGKTStalafar~L~~~ 84 (346)
T KOG0989|consen 62 FYGPPGTGKTSTALAFARALNCE 84 (346)
T ss_pred eeCCCCCcHhHHHHHHHHHhcCc
Confidence 46999999999999999998663
No 415
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.77 E-value=0.00069 Score=50.49 Aligned_cols=20 Identities=40% Similarity=0.584 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 32 l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 32 IVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999998654
No 416
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=96.76 E-value=0.00069 Score=45.65 Aligned_cols=29 Identities=38% Similarity=0.515 Sum_probs=22.9
Q ss_pred CCCCCCCChHHHHHHHHHhC---CC--ceechhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---KI--PLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~--~~i~~d~ 29 (203)
+.|.+|+||||++..|+..+ +. .++++|.
T Consensus 4 ~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 4 ITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 47999999999999998776 44 3477765
No 417
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.76 E-value=0.00075 Score=50.99 Aligned_cols=20 Identities=40% Similarity=0.659 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+|||||||..+.+.+..
T Consensus 3 v~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 3 VHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred EEcCCCCCHHHHHHHHHHhc
Confidence 47999999999999999874
No 418
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.76 E-value=0.0007 Score=50.79 Aligned_cols=20 Identities=35% Similarity=0.642 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 33 LLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999654
No 419
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.74 E-value=0.0024 Score=51.21 Aligned_cols=116 Identities=14% Similarity=0.202 Sum_probs=55.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCC--ceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASALKI--PLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~--~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 78 (203)
|+|++||||||+.+.|...++. .++...+..+-..+ .+........... ....... +.+.+...+
T Consensus 167 I~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~--------~~~~v~l~~~~~~--~~~~~~t---~~~ll~~~L 233 (344)
T PRK13851 167 LCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIP--------HENHVRLLYSKNG--AGLGAVT---AEHLLQASL 233 (344)
T ss_pred EECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCC--------CCCEEEEEeeccc--cCcCccC---HHHHHHHHh
Confidence 5799999999999999977642 23333333221110 0000000000000 0000111 233455556
Q ss_pred hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcC
Q 039424 79 KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRG 131 (203)
Q Consensus 79 ~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~ 131 (203)
.....+|+-|=....+.++.+..+...+.--+..+ ++........|+....
T Consensus 234 R~~pD~IivGEiR~~ea~~~l~a~~tGh~G~ltTi--Ha~s~~~a~~Rl~~l~ 284 (344)
T PRK13851 234 RMRPDRILLGEMRDDAAWAYLSEVVSGHPGSISTI--HGANPVQGFKKLFSLV 284 (344)
T ss_pred cCCCCeEEEEeeCcHHHHHHHHHHHhCCCcEEECC--CCCCHHHHHHHHHHHH
Confidence 66666666663333444555554443221122334 4445557888887653
No 420
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.74 E-value=0.00071 Score=50.53 Aligned_cols=20 Identities=40% Similarity=0.655 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 33 l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 33 LTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 421
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.74 E-value=0.013 Score=48.11 Aligned_cols=23 Identities=43% Similarity=0.712 Sum_probs=20.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|.||||+||||+|+.|++.+...
T Consensus 41 f~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 41 FTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EECCCCCcHHHHHHHHHHHhCCC
Confidence 57999999999999999887543
No 422
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.00075 Score=50.29 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 31 i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 31 LLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999654
No 423
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=96.74 E-value=0.001 Score=52.17 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=27.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH--hhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV--RDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~--~~~ 33 (203)
|+||.|||||.+|-.||++ +..+||.|.. ++.
T Consensus 9 I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ 42 (300)
T PRK14729 9 IFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKE 42 (300)
T ss_pred EECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCC
Confidence 5799999999999999999 5589999866 554
No 424
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.74 E-value=0.00071 Score=50.22 Aligned_cols=20 Identities=40% Similarity=0.725 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 31 i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 31 LTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999998654
No 425
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.74 E-value=0.0079 Score=47.52 Aligned_cols=33 Identities=30% Similarity=0.375 Sum_probs=24.4
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCc--eechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIP--LIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~--~i~~d~~~~~ 33 (203)
++|..|+||||-.-.||+.| |.. ..-.|.+|..
T Consensus 144 ~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAa 181 (340)
T COG0552 144 FVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAA 181 (340)
T ss_pred EEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHH
Confidence 57999999999999999888 443 3444555543
No 426
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.74 E-value=0.00075 Score=50.40 Aligned_cols=20 Identities=40% Similarity=0.511 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 31 i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 31 LLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 427
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.74 E-value=0.00076 Score=56.89 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=19.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCC
Q 039424 1 MKGHPGTGKSTLADAIASALKI 22 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~ 22 (203)
|+||||+||||+|+.|++.+..
T Consensus 41 f~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 41 FSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred EECCCCCCHHHHHHHHHHHHhc
Confidence 5799999999999999998853
No 428
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.73 E-value=0.00074 Score=51.25 Aligned_cols=20 Identities=45% Similarity=0.625 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 31 l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 31 IIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999654
No 429
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.73 E-value=0.00073 Score=50.73 Aligned_cols=20 Identities=45% Similarity=0.536 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 35 i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 35 LVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 430
>PHA03134 thymidine kinase; Provisional
Probab=96.73 E-value=0.062 Score=42.77 Aligned_cols=19 Identities=47% Similarity=0.615 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|+.|.||||.++.|+..
T Consensus 18 lDG~~GvGKTT~~~~l~~~ 36 (340)
T PHA03134 18 LDGAYGIGKSTTGRVMASA 36 (340)
T ss_pred EeCCCcCCHHHHHHHHHHh
Confidence 5799999999999999863
No 431
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.72 E-value=0.00085 Score=45.00 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|.+||||||+.+.|+...
T Consensus 4 V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 4 VLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EECSTTSSHHHHHHHHHHSS
T ss_pred EECcCCCCHHHHHHHHhcCC
Confidence 47999999999999998654
No 432
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.72 E-value=0.00096 Score=42.70 Aligned_cols=28 Identities=39% Similarity=0.540 Sum_probs=22.1
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCceechh
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~~i~~d 28 (203)
+.|.+|+||||++..|+..+ |..++-.|
T Consensus 4 ~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 4 VTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 46888999999999999887 56655544
No 433
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.72 E-value=0.00075 Score=50.70 Aligned_cols=20 Identities=40% Similarity=0.640 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 31 i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 31 LLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 434
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.71 E-value=0.0053 Score=46.72 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=21.1
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~ 30 (203)
|.|+|||||||+|..++... | ..+++.+.-
T Consensus 26 I~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~ 60 (237)
T TIGR03877 26 LSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH 60 (237)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC
Confidence 57999999999998765431 3 446665543
No 435
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.71 E-value=0.0009 Score=49.79 Aligned_cols=29 Identities=28% Similarity=0.546 Sum_probs=22.7
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--Cceechhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~ 29 (203)
|+|+|||||||+|..++... | ..+++++.
T Consensus 17 i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 17 IYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 57999999999999988543 3 55777764
No 436
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.71 E-value=0.00081 Score=48.83 Aligned_cols=20 Identities=45% Similarity=0.584 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 31 i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 31 LLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 437
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.71 E-value=0.00081 Score=49.90 Aligned_cols=20 Identities=40% Similarity=0.551 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 29 i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 29 IIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999654
No 438
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.71 E-value=0.0009 Score=48.72 Aligned_cols=29 Identities=31% Similarity=0.383 Sum_probs=21.3
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--Cceechhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~ 29 (203)
|.|+||+||||++..++... | ..+++.+.
T Consensus 4 i~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 4 LSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 57999999999998886543 3 44666643
No 439
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.71 E-value=0.0032 Score=56.60 Aligned_cols=20 Identities=30% Similarity=0.792 Sum_probs=18.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+||+||||+++.|+...
T Consensus 204 L~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 204 LIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999887
No 440
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.71 E-value=0.00094 Score=59.02 Aligned_cols=30 Identities=37% Similarity=0.611 Sum_probs=24.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCce--echhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPL--IDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~--i~~d~~ 30 (203)
|+||||+|||++|+.|++.++..+ +++..+
T Consensus 489 f~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~ 520 (731)
T TIGR02639 489 FTGPTGVGKTELAKQLAEALGVHLERFDMSEY 520 (731)
T ss_pred EECCCCccHHHHHHHHHHHhcCCeEEEeCchh
Confidence 579999999999999999997654 555444
No 441
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.00079 Score=51.01 Aligned_cols=20 Identities=40% Similarity=0.554 Sum_probs=18.0
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 36 l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 36 IIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999665
No 442
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.70 E-value=0.00081 Score=51.26 Aligned_cols=20 Identities=40% Similarity=0.586 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 33 l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 33 IIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 57999999999999998654
No 443
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.70 E-value=0.00082 Score=50.17 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 31 l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 31 LLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999654
No 444
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.69 E-value=0.00081 Score=51.19 Aligned_cols=20 Identities=35% Similarity=0.581 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 32 i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 32 LIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 57999999999999998654
No 445
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.69 E-value=0.00077 Score=51.16 Aligned_cols=20 Identities=40% Similarity=0.604 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 31 l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 31 LIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred EECCCCCCHHHHHHHHcCCC
Confidence 57999999999999998654
No 446
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.68 E-value=0.00086 Score=50.04 Aligned_cols=20 Identities=40% Similarity=0.493 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 31 l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 31 IIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999654
No 447
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.68 E-value=0.0011 Score=45.03 Aligned_cols=20 Identities=40% Similarity=0.616 Sum_probs=18.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
+.|+||+|||.+++.||+.+
T Consensus 58 fHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 58 FHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred eecCCCCcHHHHHHHHHHHH
Confidence 46999999999999999984
No 448
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.68 E-value=0.001 Score=46.29 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=17.2
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|++||||||+.+.|...
T Consensus 1 i~G~~gsGKstl~~~l~~~ 19 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQ 19 (163)
T ss_pred CcCCCCCCHHHHHHHHhCc
Confidence 6899999999999999854
No 449
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.68 E-value=0.0059 Score=48.56 Aligned_cols=59 Identities=10% Similarity=0.014 Sum_probs=32.7
Q ss_pred HHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcC
Q 039424 71 WKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRG 131 (203)
Q Consensus 71 ~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~ 131 (203)
.+.+...+.....+|+-|=....+..+.+..+.. |.+-.+--+++.+......|+..-.
T Consensus 209 ~~ll~~aLR~~PD~IivGEiR~~Ea~~~l~A~~t--Gh~G~~tTiHa~s~~~ai~Rl~~l~ 267 (319)
T PRK13894 209 TALLKTTLRMRPDRILVGEVRGPEALDLLMAWNT--GHEGGAATLHANNAKAGLDRLKSLI 267 (319)
T ss_pred HHHHHHHhcCCCCEEEEeccCCHHHHHHHHHHHc--CCCceEEEECCCCHHHHHHHHHHHH
Confidence 4455666777777777774444455554444333 3331233344455567888887654
No 450
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.68 E-value=0.00079 Score=48.89 Aligned_cols=20 Identities=40% Similarity=0.606 Sum_probs=17.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 30 l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 30 IVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred EECCCCChHHHHHHHHHcCC
Confidence 57999999999999998644
No 451
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.68 E-value=0.00086 Score=48.44 Aligned_cols=20 Identities=40% Similarity=0.587 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 31 i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 31 LLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 452
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=96.68 E-value=0.001 Score=55.07 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=24.0
Q ss_pred CCCCCCCChHHHHHHHHHhC----CCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASAL----KIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~~~~i~~d~~ 30 (203)
|+||+||||||++|.|.--. |...+|.-++
T Consensus 367 IIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l 400 (580)
T COG4618 367 IIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400 (580)
T ss_pred EECCCCccHHHHHHHHHcccccCCCcEEecchhh
Confidence 58999999999999997543 5667777666
No 453
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.68 E-value=0.00088 Score=50.31 Aligned_cols=20 Identities=35% Similarity=0.513 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 36 i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 36 IVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 454
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.68 E-value=0.00086 Score=51.04 Aligned_cols=20 Identities=40% Similarity=0.544 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 33 LLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 455
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.67 E-value=0.00087 Score=50.17 Aligned_cols=20 Identities=30% Similarity=0.521 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 18 l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 18 ILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 57999999999999998554
No 456
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.67 E-value=0.0011 Score=56.39 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+|+||+||||+|+.|++.++..
T Consensus 43 f~Gp~G~GKTt~A~~lAk~l~c~ 65 (527)
T PRK14969 43 FTGTRGVGKTTLARILAKSLNCE 65 (527)
T ss_pred EECCCCCCHHHHHHHHHHHhcCC
Confidence 58999999999999999998753
No 457
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.66 E-value=0.0009 Score=50.73 Aligned_cols=20 Identities=35% Similarity=0.513 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 40 l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 40 IVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999654
No 458
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.66 E-value=0.001 Score=49.83 Aligned_cols=29 Identities=38% Similarity=0.642 Sum_probs=22.4
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCceechhh
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIPLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~~i~~d~ 29 (203)
|.|+|||||||+|..++... +..+++++.
T Consensus 24 i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~ 57 (218)
T cd01394 24 VYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG 57 (218)
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 57999999999999998664 244676653
No 459
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.66 E-value=0.014 Score=46.94 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=18.2
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|+|++||||||+.+.|...+.
T Consensus 127 i~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 127 VTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred EECCCCCCHHHHHHHHHHhhC
Confidence 589999999999999887653
No 460
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.66 E-value=0.00093 Score=47.97 Aligned_cols=20 Identities=45% Similarity=0.644 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+++.|+..+
T Consensus 32 i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 32 ITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999998654
No 461
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.66 E-value=0.00081 Score=50.23 Aligned_cols=20 Identities=50% Similarity=0.647 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 30 l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 30 IVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EECCCCCCHHHHHHHHcCCC
Confidence 57999999999999998654
No 462
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.66 E-value=0.00092 Score=48.52 Aligned_cols=20 Identities=40% Similarity=0.682 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 33 i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 33 LLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 57999999999999998654
No 463
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.66 E-value=0.001 Score=48.43 Aligned_cols=34 Identities=41% Similarity=0.554 Sum_probs=27.2
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHhhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVRDCT 34 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~~~~ 34 (203)
|.|+||+|||.+|..++..+ | +.+++..++...+
T Consensus 52 l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 52 LYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred EEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 47999999999999998654 3 5578888887654
No 464
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.65 E-value=0.00091 Score=50.46 Aligned_cols=20 Identities=35% Similarity=0.444 Sum_probs=18.0
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 31 i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 31 LIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 57999999999999999765
No 465
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.65 E-value=0.0067 Score=45.80 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=15.4
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|+||+||||++..++.
T Consensus 25 i~G~~G~GKT~l~~~~~~ 42 (229)
T TIGR03881 25 VTGEPGTGKTIFCLHFAY 42 (229)
T ss_pred EECCCCCChHHHHHHHHH
Confidence 479999999999987763
No 466
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.65 E-value=0.00094 Score=49.47 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=16.3
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|+||+|+||||+.+.++.
T Consensus 30 ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 30 ITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred EECCCCCChHHHHHHHHH
Confidence 589999999999999973
No 467
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.64 E-value=0.00093 Score=50.17 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 31 i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 31 LLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999654
No 468
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.64 E-value=0.0013 Score=45.16 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=18.0
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|++||||||+.+.|.....
T Consensus 1 iiG~~~~GKStl~~~l~~~~~ 21 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEF 21 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCc
Confidence 689999999999999986543
No 469
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.64 E-value=0.00098 Score=49.12 Aligned_cols=20 Identities=45% Similarity=0.680 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 31 l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 31 IKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999654
No 470
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.63 E-value=0.00096 Score=49.06 Aligned_cols=18 Identities=44% Similarity=0.796 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|+|++||||||+.+.|+.
T Consensus 38 l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 38 LMGESGAGKTTLLDVLAG 55 (192)
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 579999999999999995
No 471
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.62 E-value=0.00099 Score=50.27 Aligned_cols=21 Identities=43% Similarity=0.745 Sum_probs=18.2
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|+|++||||||+.+.|+..+.
T Consensus 38 l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 38 ILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred EECCCCCCHHHHHHHHhCccC
Confidence 579999999999999986543
No 472
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.62 E-value=0.0012 Score=57.45 Aligned_cols=27 Identities=52% Similarity=0.796 Sum_probs=23.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.|+||+||||+++.++..++.+++..
T Consensus 190 l~G~~G~GKt~~~~~~a~~~~~~f~~i 216 (644)
T PRK10733 190 MVGPPGTGKTLLAKAIAGEAKVPFFTI 216 (644)
T ss_pred EECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 479999999999999999999887554
No 473
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.62 E-value=0.00097 Score=50.42 Aligned_cols=20 Identities=35% Similarity=0.591 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 31 l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 31 VLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999655
No 474
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.61 E-value=0.001 Score=50.69 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 33 i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 33 LLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999654
No 475
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.61 E-value=0.001 Score=48.33 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=15.9
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|++||||||+.+.+..
T Consensus 26 l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 26 VTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EECCCCCCHHHHHHHHhh
Confidence 579999999999999853
No 476
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.61 E-value=0.001 Score=48.47 Aligned_cols=20 Identities=30% Similarity=0.511 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 31 i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 31 IAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999665
No 477
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.61 E-value=0.001 Score=50.17 Aligned_cols=20 Identities=45% Similarity=0.682 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 38 i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 38 ITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 57999999999999998654
No 478
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.0011 Score=57.07 Aligned_cols=28 Identities=36% Similarity=0.566 Sum_probs=23.3
Q ss_pred CCCCCCCChHHHHHHHHHhCC--Cceechh
Q 039424 1 MKGHPGTGKSTLADAIASALK--IPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~--~~~i~~d 28 (203)
|.||||+|||++++.+|+.+| +..+|.+
T Consensus 443 f~GPPGVGKTSI~kSIA~ALnRkFfRfSvG 472 (906)
T KOG2004|consen 443 FVGPPGVGKTSIAKSIARALNRKFFRFSVG 472 (906)
T ss_pred EeCCCCCCcccHHHHHHHHhCCceEEEecc
Confidence 579999999999999999997 4445554
No 479
>COG4240 Predicted kinase [General function prediction only]
Probab=96.60 E-value=0.0014 Score=49.02 Aligned_cols=32 Identities=34% Similarity=0.467 Sum_probs=24.5
Q ss_pred CCCCCCCChHHHHHHHHHhC---C---CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K---IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~---~~~i~~d~~~~ 32 (203)
|+||-||||||+|..|...+ | ...+|.|+++-
T Consensus 55 isGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYl 92 (300)
T COG4240 55 ISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYL 92 (300)
T ss_pred eecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhc
Confidence 68999999999998775444 2 34688898854
No 480
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=96.60 E-value=0.0025 Score=48.15 Aligned_cols=103 Identities=14% Similarity=0.213 Sum_probs=58.4
Q ss_pred CCCCCCCChHHHHHHHHHhCC---CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK---IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQ 77 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~---~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (203)
|.|..||||+.+.+.|...+. +.+.+.+..-.. +..++.++......
T Consensus 36 ~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~e------------------------------E~~~p~lwRfw~~l 85 (228)
T PF03976_consen 36 FEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDE------------------------------ELRRPFLWRFWRAL 85 (228)
T ss_dssp EEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HH------------------------------HHTS-TTHHHHTTS
T ss_pred EeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChh------------------------------HcCCCcHHHHHHhC
Confidence 469999999999999998885 333333222100 01112233333333
Q ss_pred hhCCCcEEEeCCCCc-------------h------HhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCC
Q 039424 78 LKLGVSVVVDSPLSR-------------R------AHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEG 134 (203)
Q Consensus 78 l~~~~~vIid~~~~~-------------~------~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~ 134 (203)
-..|...|.|++-.. . +....|.++....|+-++-++|+.+- +..++|+..|..+|
T Consensus 86 P~~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr~L~~~G~~IiKfflhIsk-~eQ~kRl~~~~~~p 160 (228)
T PF03976_consen 86 PARGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFERMLADDGTLIIKFFLHISK-KEQKKRLKEREEDP 160 (228)
T ss_dssp --TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEE--H-HHHHHHHHHHHHSC
T ss_pred CCCCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCCeEEEEEEEeCH-HHHHHHHHHHhcCc
Confidence 345666666663111 0 12334555666778888899999765 58999999997765
No 481
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.59 E-value=0.015 Score=46.77 Aligned_cols=31 Identities=26% Similarity=0.551 Sum_probs=25.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~ 32 (203)
+.|+.|||||++...|.+ .+..++|.-...+
T Consensus 146 l~G~TGsGKT~iL~~L~~-~~~~vlDlE~~ae 176 (345)
T PRK11784 146 LGGNTGSGKTELLQALAN-AGAQVLDLEGLAN 176 (345)
T ss_pred cCCCCcccHHHHHHHHHh-cCCeEEECCchhh
Confidence 579999999999999984 4788999877743
No 482
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.59 E-value=0.0011 Score=49.31 Aligned_cols=21 Identities=38% Similarity=0.711 Sum_probs=18.4
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|+|++||||||+...+.+.++
T Consensus 27 ~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 27 FMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 579999999999999987753
No 483
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.59 E-value=0.0011 Score=50.46 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 32 i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 32 LLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 57999999999999998654
No 484
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.59 E-value=0.0077 Score=51.65 Aligned_cols=23 Identities=35% Similarity=0.497 Sum_probs=20.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+||+|+||||+|+.|++.++..
T Consensus 43 f~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 43 FSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred EECCCCCCHHHHHHHHHHHhcCC
Confidence 58999999999999999988654
No 485
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.59 E-value=0.0011 Score=46.72 Aligned_cols=28 Identities=46% Similarity=0.784 Sum_probs=21.9
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--Cceechh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d 28 (203)
+.|++||||||++..|+..+ | +.+++.|
T Consensus 4 ~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D 36 (148)
T cd03114 4 ITGVPGAGKSTLIDALITALRARGKRVAVLAID 36 (148)
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 47999999999999998776 2 3455555
No 486
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.58 E-value=0.0011 Score=50.06 Aligned_cols=20 Identities=55% Similarity=0.760 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 36 i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 36 LVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999654
No 487
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.58 E-value=0.001 Score=50.65 Aligned_cols=19 Identities=47% Similarity=0.711 Sum_probs=17.3
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|+|++||||||+.+.|+..
T Consensus 31 i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 31 IMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5799999999999999965
No 488
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.58 E-value=0.0011 Score=49.27 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 31 i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 31 FLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 57999999999999998654
No 489
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.58 E-value=0.001 Score=46.57 Aligned_cols=20 Identities=50% Similarity=0.700 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 31 i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 31 LVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred EECCCCCCHHHHHHHHcCCC
Confidence 57999999999999998654
No 490
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.58 E-value=0.0011 Score=49.63 Aligned_cols=20 Identities=35% Similarity=0.521 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 36 i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 36 LLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 57999999999999999654
No 491
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0011 Score=49.56 Aligned_cols=20 Identities=45% Similarity=0.549 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 28 i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 28 IFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 492
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.57 E-value=0.0011 Score=50.57 Aligned_cols=20 Identities=40% Similarity=0.601 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+++.|+..+
T Consensus 34 i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 34 IVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999654
No 493
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.57 E-value=0.0011 Score=51.18 Aligned_cols=20 Identities=35% Similarity=0.483 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 44 i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 44 FIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 57999999999999999654
No 494
>PHA02624 large T antigen; Provisional
Probab=96.57 E-value=0.0015 Score=55.56 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=23.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+||||+++.|.+.+|-.+++.
T Consensus 436 ~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 436 FKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 579999999999999999996555554
No 495
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.56 E-value=0.0011 Score=50.72 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 34 i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 34 IIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999998654
No 496
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=96.56 E-value=0.0012 Score=51.38 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=18.4
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||++..|+..|
T Consensus 6 i~G~~gSGKTTLi~~Li~~L 25 (274)
T PRK14493 6 IVGYKATGKTTLVERLVDRL 25 (274)
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999887
No 497
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.56 E-value=0.001 Score=44.63 Aligned_cols=18 Identities=44% Similarity=0.772 Sum_probs=16.4
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|.|||||||+...|..
T Consensus 4 iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 4 IIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEESTTSSHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 479999999999999985
No 498
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.56 E-value=0.0011 Score=51.01 Aligned_cols=20 Identities=40% Similarity=0.591 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 32 i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 32 VLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 499
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=96.56 E-value=0.019 Score=41.95 Aligned_cols=24 Identities=25% Similarity=0.171 Sum_probs=20.0
Q ss_pred EEEEEecCCCHHHHHHHHHhcCCCC
Q 039424 110 LVIVECKPSDEAEWRRRLEGRGNEG 134 (203)
Q Consensus 110 ~~~v~l~~~~~e~~~~R~~~R~~~~ 134 (203)
..+|||.++|+ +|.+|+..|.+..
T Consensus 155 dgiIYLrasPe-tc~~Ri~~R~R~E 178 (244)
T KOG4235|consen 155 DGIIYLRASPE-TCYKRIYLRAREE 178 (244)
T ss_pred ceEEEeecChH-HHHHHHHHHhhhh
Confidence 45899999885 9999999987764
No 500
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.56 E-value=0.023 Score=45.43 Aligned_cols=22 Identities=41% Similarity=0.658 Sum_probs=19.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCC
Q 039424 1 MKGHPGTGKSTLADAIASALKI 22 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~ 22 (203)
|+|++|+||+|+|..+|+.+..
T Consensus 27 f~G~~G~GK~~~A~~~A~~llC 48 (328)
T PRK05707 27 LHGPAGIGKRALAERLAAALLC 48 (328)
T ss_pred eECCCCCCHHHHHHHHHHHHcC
Confidence 5899999999999999998854
Done!