Query 039424
Match_columns 203
No_of_seqs 137 out of 1535
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 16:15:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039424.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039424hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sr0_A Adenylate kinase; phosp 99.9 2E-25 6.9E-30 164.8 13.4 187 1-200 5-204 (206)
2 3umf_A Adenylate kinase; rossm 99.9 1.9E-23 6.5E-28 155.0 10.6 176 1-202 34-215 (217)
3 3dl0_A Adenylate kinase; phosp 99.9 1.1E-22 3.8E-27 151.4 14.5 189 1-202 5-216 (216)
4 3fb4_A Adenylate kinase; psych 99.9 1.8E-22 6.1E-27 150.3 13.9 188 1-201 5-215 (216)
5 3gmt_A Adenylate kinase; ssgci 99.9 1E-23 3.5E-28 157.0 7.0 184 1-200 13-229 (230)
6 3tlx_A Adenylate kinase 2; str 99.9 1.4E-21 4.8E-26 148.1 13.3 186 1-199 34-242 (243)
7 3be4_A Adenylate kinase; malar 99.9 4.2E-21 1.4E-25 143.1 14.6 185 1-198 10-217 (217)
8 1aky_A Adenylate kinase; ATP:A 99.9 7.9E-21 2.7E-25 141.8 14.7 186 1-200 9-219 (220)
9 2xb4_A Adenylate kinase; ATP-b 99.9 6.2E-21 2.1E-25 142.8 13.7 184 1-198 5-222 (223)
10 3a4m_A L-seryl-tRNA(SEC) kinas 99.8 8E-20 2.7E-24 139.7 17.7 159 1-199 9-172 (260)
11 3t61_A Gluconokinase; PSI-biol 99.8 7.3E-20 2.5E-24 134.8 15.7 158 1-201 23-180 (202)
12 1qf9_A UMP/CMP kinase, protein 99.8 2.4E-20 8.2E-25 136.1 12.2 177 1-202 11-193 (194)
13 3lw7_A Adenylate kinase relate 99.8 4.5E-20 1.5E-24 132.5 12.9 168 1-201 6-177 (179)
14 1tev_A UMP-CMP kinase; ploop, 99.8 6.3E-20 2.2E-24 134.0 12.7 177 1-200 8-194 (196)
15 2rhm_A Putative kinase; P-loop 99.8 1.2E-19 4.2E-24 132.4 13.9 118 1-132 10-127 (193)
16 1ak2_A Adenylate kinase isoenz 99.8 8.8E-20 3E-24 137.3 13.1 186 1-200 21-230 (233)
17 2cdn_A Adenylate kinase; phosp 99.8 2.9E-19 9.9E-24 131.5 15.4 168 1-199 25-200 (201)
18 1ly1_A Polynucleotide kinase; 99.8 4.2E-20 1.5E-24 133.4 10.3 161 1-199 7-171 (181)
19 1e4v_A Adenylate kinase; trans 99.8 8.6E-20 2.9E-24 135.6 12.0 182 1-198 5-213 (214)
20 3cm0_A Adenylate kinase; ATP-b 99.8 1.9E-19 6.4E-24 130.8 13.3 168 1-199 9-185 (186)
21 2c95_A Adenylate kinase 1; tra 99.8 1.6E-19 5.4E-24 132.1 12.5 173 1-200 14-193 (196)
22 2bwj_A Adenylate kinase 5; pho 99.8 1.2E-19 3.9E-24 133.2 10.7 168 1-200 17-196 (199)
23 1knq_A Gluconate kinase; ALFA/ 99.8 1.3E-18 4.4E-23 125.2 15.4 161 1-200 13-173 (175)
24 1ukz_A Uridylate kinase; trans 99.8 4.9E-19 1.7E-23 130.4 13.2 175 1-200 20-201 (203)
25 4eun_A Thermoresistant glucoki 99.8 7.9E-19 2.7E-23 129.1 12.8 160 1-200 34-193 (200)
26 3vaa_A Shikimate kinase, SK; s 99.8 9.3E-19 3.2E-23 128.7 12.8 158 1-200 30-195 (199)
27 2vli_A Antibiotic resistance p 99.8 6.8E-18 2.3E-22 122.1 15.9 160 1-200 10-171 (183)
28 3kb2_A SPBC2 prophage-derived 99.8 4.4E-18 1.5E-22 121.9 14.5 146 1-200 6-166 (173)
29 4i1u_A Dephospho-COA kinase; s 99.8 2.3E-18 7.7E-23 126.7 12.9 167 1-200 14-201 (210)
30 1qhx_A CPT, protein (chloramph 99.8 4.6E-18 1.6E-22 122.6 13.5 166 1-199 8-177 (178)
31 3trf_A Shikimate kinase, SK; a 99.8 5.4E-18 1.9E-22 122.9 12.0 159 1-200 10-174 (185)
32 1zak_A Adenylate kinase; ATP:A 99.8 6E-18 2.1E-22 126.3 12.3 183 1-200 10-210 (222)
33 1ltq_A Polynucleotide kinase; 99.8 3.9E-18 1.3E-22 132.9 11.5 153 1-183 7-168 (301)
34 1zd8_A GTP:AMP phosphotransfer 99.7 1.6E-17 5.4E-22 124.5 11.1 181 1-200 12-214 (227)
35 2pbr_A DTMP kinase, thymidylat 99.7 1.6E-16 5.5E-21 115.8 15.1 170 1-200 5-191 (195)
36 2z0h_A DTMP kinase, thymidylat 99.7 1.2E-16 4.3E-21 116.7 12.3 171 1-201 5-192 (197)
37 2iyv_A Shikimate kinase, SK; t 99.7 6.7E-17 2.3E-21 117.1 10.4 159 1-200 7-168 (184)
38 1e6c_A Shikimate kinase; phosp 99.7 1.2E-16 4.2E-21 114.5 11.3 157 1-200 7-170 (173)
39 2yvu_A Probable adenylyl-sulfa 99.7 7E-17 2.4E-21 117.3 9.9 157 1-200 18-183 (186)
40 1zuh_A Shikimate kinase; alpha 99.7 1.1E-16 3.6E-21 114.4 10.3 152 1-198 12-167 (168)
41 1via_A Shikimate kinase; struc 99.7 1.1E-16 3.8E-21 115.1 10.3 156 1-200 9-166 (175)
42 1jjv_A Dephospho-COA kinase; P 99.7 9.8E-17 3.4E-21 118.3 10.1 167 1-200 7-196 (206)
43 1kag_A SKI, shikimate kinase I 99.7 2.5E-16 8.4E-21 112.9 11.4 160 1-200 9-172 (173)
44 1m7g_A Adenylylsulfate kinase; 99.7 3.3E-16 1.1E-20 116.0 11.4 160 1-201 30-203 (211)
45 2pt5_A Shikimate kinase, SK; a 99.7 2.5E-16 8.6E-21 112.3 9.2 157 1-201 5-164 (168)
46 3zvl_A Bifunctional polynucleo 99.7 4.8E-16 1.7E-20 126.2 12.0 122 1-168 263-384 (416)
47 3uie_A Adenylyl-sulfate kinase 99.7 5.8E-16 2E-20 113.8 10.9 155 1-201 30-195 (200)
48 4eaq_A DTMP kinase, thymidylat 99.7 1.1E-15 3.7E-20 114.6 12.2 177 1-200 31-224 (229)
49 2if2_A Dephospho-COA kinase; a 99.7 5.7E-16 2E-20 114.0 10.0 167 1-201 6-192 (204)
50 4edh_A DTMP kinase, thymidylat 99.7 5.7E-15 1.9E-19 109.4 15.2 179 1-200 11-206 (213)
51 2f6r_A COA synthase, bifunctio 99.6 1.5E-15 5E-20 117.3 11.1 167 1-200 80-268 (281)
52 1nks_A Adenylate kinase; therm 99.6 1.5E-15 5E-20 110.5 9.8 165 1-199 6-194 (194)
53 3nwj_A ATSK2; P loop, shikimat 99.6 1.9E-15 6.5E-20 114.5 10.6 161 1-200 53-236 (250)
54 1vht_A Dephospho-COA kinase; s 99.6 1.1E-15 3.9E-20 113.6 9.2 167 1-200 9-194 (218)
55 2pez_A Bifunctional 3'-phospho 99.6 5.3E-15 1.8E-19 106.6 12.4 160 1-201 10-176 (179)
56 3v9p_A DTMP kinase, thymidylat 99.6 1.7E-15 5.8E-20 113.0 10.0 176 1-201 30-227 (227)
57 1x6v_B Bifunctional 3'-phospho 99.6 5.9E-15 2E-19 124.2 14.1 157 1-201 57-223 (630)
58 4hlc_A DTMP kinase, thymidylat 99.6 9.3E-15 3.2E-19 107.6 13.3 171 1-200 7-200 (205)
59 3hjn_A DTMP kinase, thymidylat 99.6 1.9E-14 6.6E-19 105.3 14.6 167 1-200 5-191 (197)
60 2grj_A Dephospho-COA kinase; T 99.6 1.3E-15 4.6E-20 111.0 7.5 157 1-201 17-187 (192)
61 4tmk_A Protein (thymidylate ki 99.6 5.2E-14 1.8E-18 104.2 15.7 177 1-200 8-206 (213)
62 2wwf_A Thymidilate kinase, put 99.6 2.1E-15 7.1E-20 111.5 7.7 169 1-200 15-199 (212)
63 1kht_A Adenylate kinase; phosp 99.6 3.7E-15 1.3E-19 108.3 8.7 34 1-34 8-46 (192)
64 2plr_A DTMP kinase, probable t 99.6 4.3E-14 1.5E-18 104.2 14.6 177 1-200 9-207 (213)
65 1gvn_B Zeta; postsegregational 99.6 1.4E-14 4.6E-19 112.1 12.4 120 1-131 38-163 (287)
66 1uf9_A TT1252 protein; P-loop, 99.6 1.6E-14 5.6E-19 105.9 11.3 168 1-201 13-194 (203)
67 3ake_A Cytidylate kinase; CMP 99.6 5.6E-14 1.9E-18 103.4 14.0 167 1-199 7-207 (208)
68 1m8p_A Sulfate adenylyltransfe 99.6 8.6E-15 2.9E-19 122.9 10.3 159 1-201 401-567 (573)
69 2p5t_B PEZT; postsegregational 99.6 1.6E-14 5.3E-19 109.9 10.4 120 1-131 37-158 (253)
70 3lv8_A DTMP kinase, thymidylat 99.6 3.9E-14 1.3E-18 106.3 12.4 179 1-200 32-228 (236)
71 2gks_A Bifunctional SAT/APS ki 99.6 2.6E-15 9E-20 125.4 6.6 160 1-201 377-541 (546)
72 3fdi_A Uncharacterized protein 99.6 1.8E-14 6.3E-19 105.8 10.1 169 1-201 11-199 (201)
73 4e22_A Cytidylate kinase; P-lo 99.6 9.7E-14 3.3E-18 105.4 14.3 171 1-200 32-244 (252)
74 3r20_A Cytidylate kinase; stru 99.5 1.2E-13 4.2E-18 103.2 13.7 171 1-200 14-227 (233)
75 2jaq_A Deoxyguanosine kinase; 99.5 6.5E-14 2.2E-18 102.7 12.1 77 108-201 124-201 (205)
76 3iij_A Coilin-interacting nucl 99.5 6.3E-15 2.2E-19 106.3 6.0 155 1-200 16-173 (180)
77 1nn5_A Similar to deoxythymidy 99.5 2.1E-14 7.2E-19 106.2 9.0 171 1-200 14-200 (215)
78 1cke_A CK, MSSA, protein (cyti 99.5 3.1E-13 1.1E-17 100.8 14.9 33 1-33 10-42 (227)
79 1y63_A LMAJ004144AAA protein; 99.5 1.7E-14 6E-19 104.5 7.8 33 1-33 15-48 (184)
80 1uj2_A Uridine-cytidine kinase 99.5 2.5E-14 8.5E-19 108.7 9.0 162 1-200 27-233 (252)
81 2v54_A DTMP kinase, thymidylat 99.5 4.6E-14 1.6E-18 103.6 9.6 168 1-200 9-190 (204)
82 2h92_A Cytidylate kinase; ross 99.5 4.4E-13 1.5E-17 99.5 15.0 171 1-201 8-218 (219)
83 3hdt_A Putative kinase; struct 99.5 5.5E-14 1.9E-18 104.7 9.5 175 1-201 19-219 (223)
84 2bbw_A Adenylate kinase 4, AK4 99.5 1.3E-13 4.5E-18 104.3 11.4 182 1-200 32-234 (246)
85 2axn_A 6-phosphofructo-2-kinas 99.5 1E-13 3.4E-18 115.4 11.3 124 1-132 40-170 (520)
86 1q3t_A Cytidylate kinase; nucl 99.5 1.3E-12 4.4E-17 98.2 16.5 33 1-33 21-53 (236)
87 2qor_A Guanylate kinase; phosp 99.5 1.6E-14 5.4E-19 106.4 5.7 99 73-200 95-196 (204)
88 1ex7_A Guanylate kinase; subst 99.5 1.6E-13 5.5E-18 99.2 8.4 105 70-201 81-185 (186)
89 2qt1_A Nicotinamide riboside k 99.5 2.6E-13 8.8E-18 100.0 9.5 166 1-200 26-205 (207)
90 3ld9_A DTMP kinase, thymidylat 99.4 4.4E-13 1.5E-17 99.6 9.7 165 1-200 26-215 (223)
91 3cr8_A Sulfate adenylyltranfer 99.4 4E-13 1.4E-17 112.1 10.3 161 1-201 374-540 (552)
92 2bdt_A BH3686; alpha-beta prot 99.4 2.1E-12 7E-17 93.7 12.7 156 1-195 7-168 (189)
93 3tr0_A Guanylate kinase, GMP k 99.4 1E-12 3.5E-17 96.4 7.6 99 73-201 89-187 (205)
94 3tmk_A Thymidylate kinase; pho 99.3 3E-12 1E-16 94.7 8.0 172 1-200 10-202 (216)
95 3a00_A Guanylate kinase, GMP k 99.3 8.8E-13 3E-17 95.6 4.2 103 72-201 83-185 (186)
96 3tau_A Guanylate kinase, GMP k 99.3 3.7E-13 1.3E-17 99.3 2.2 99 72-200 90-188 (208)
97 1p5z_B DCK, deoxycytidine kina 99.3 3E-12 1E-16 97.7 7.1 77 108-200 174-258 (263)
98 2ze6_A Isopentenyl transferase 99.3 9.1E-12 3.1E-16 94.6 9.0 123 1-132 6-140 (253)
99 1bif_A 6-phosphofructo-2-kinas 99.3 6.1E-11 2.1E-15 97.7 14.1 123 1-131 44-173 (469)
100 1zp6_A Hypothetical protein AT 99.3 3.4E-11 1.2E-15 87.3 11.2 161 1-201 14-176 (191)
101 2j41_A Guanylate kinase; GMP, 99.3 5.9E-12 2E-16 92.4 6.0 99 73-201 89-187 (207)
102 3lnc_A Guanylate kinase, GMP k 99.1 7.8E-12 2.7E-16 93.6 1.3 98 74-200 111-208 (231)
103 2vp4_A Deoxynucleoside kinase; 99.1 6.1E-11 2.1E-15 88.7 3.0 76 108-200 146-224 (230)
104 1gtv_A TMK, thymidylate kinase 99.0 2.4E-12 8.2E-17 95.0 -4.9 111 74-196 81-209 (214)
105 4gp7_A Metallophosphoesterase; 99.0 2.3E-09 8E-14 76.4 10.3 111 1-133 14-124 (171)
106 2ocp_A DGK, deoxyguanosine kin 99.0 1E-09 3.5E-14 82.6 7.8 75 108-199 149-232 (241)
107 1s96_A Guanylate kinase, GMP k 98.9 3.7E-09 1.3E-13 78.4 8.8 98 73-200 100-197 (219)
108 2jeo_A Uridine-cytidine kinase 98.9 2E-09 6.7E-14 81.2 7.4 32 1-32 30-71 (245)
109 3a8t_A Adenylate isopentenyltr 98.9 2.4E-09 8E-14 83.9 6.7 30 1-30 45-74 (339)
110 1kgd_A CASK, peripheral plasma 98.9 5.8E-10 2E-14 80.2 1.8 21 1-21 10-30 (180)
111 3asz_A Uridine kinase; cytidin 98.8 2.2E-08 7.4E-13 73.5 9.8 32 1-32 11-44 (211)
112 1lvg_A Guanylate kinase, GMP k 98.8 1.9E-08 6.6E-13 73.3 8.4 100 73-200 87-187 (198)
113 3ch4_B Pmkase, phosphomevalona 98.8 1E-08 3.5E-13 74.6 6.6 166 1-200 16-189 (202)
114 3crm_A TRNA delta(2)-isopenten 98.7 4.6E-08 1.6E-12 76.3 8.1 30 1-30 10-39 (323)
115 1g8f_A Sulfate adenylyltransfe 98.6 7.2E-08 2.5E-12 79.7 6.7 29 1-29 400-435 (511)
116 3ney_A 55 kDa erythrocyte memb 98.6 4.9E-08 1.7E-12 71.0 4.5 21 1-21 24-44 (197)
117 1dek_A Deoxynucleoside monopho 98.5 1.3E-06 4.4E-11 65.5 11.3 31 1-31 6-36 (241)
118 3c8u_A Fructokinase; YP_612366 98.5 8.6E-08 2.9E-12 70.3 4.8 30 1-30 27-61 (208)
119 1sq5_A Pantothenate kinase; P- 98.5 1.5E-07 5.2E-12 73.3 6.1 31 1-31 85-122 (308)
120 1rz3_A Hypothetical protein rb 98.4 7.7E-08 2.6E-12 70.2 2.9 32 1-32 27-63 (201)
121 3tqc_A Pantothenate kinase; bi 98.4 3.1E-07 1.1E-11 71.7 5.7 31 1-31 97-134 (321)
122 1p6x_A Thymidine kinase; P-loo 98.3 2.9E-06 1E-10 66.5 9.2 22 1-22 12-33 (334)
123 1a7j_A Phosphoribulokinase; tr 98.3 6.3E-08 2.1E-12 74.8 -0.7 32 1-32 10-46 (290)
124 3czq_A Putative polyphosphate 98.3 2.9E-06 9.9E-11 65.3 7.6 103 1-134 91-215 (304)
125 1z6g_A Guanylate kinase; struc 98.2 1.5E-06 5.3E-11 64.1 5.4 101 74-200 107-207 (218)
126 3d3q_A TRNA delta(2)-isopenten 98.2 3.8E-07 1.3E-11 71.6 1.2 33 1-33 12-46 (340)
127 3ec2_A DNA replication protein 98.1 2.6E-05 9E-10 55.5 10.3 33 1-33 43-81 (180)
128 1e2k_A Thymidine kinase; trans 98.0 1.1E-05 3.6E-10 63.2 6.7 21 1-21 9-29 (331)
129 3eph_A TRNA isopentenyltransfe 98.0 2.6E-06 9E-11 68.2 3.0 33 1-33 7-41 (409)
130 1of1_A Thymidine kinase; trans 98.0 1.9E-05 6.4E-10 62.7 7.2 21 1-21 54-74 (376)
131 3exa_A TRNA delta(2)-isopenten 97.9 2.3E-06 7.9E-11 66.3 1.7 30 1-30 8-37 (322)
132 1osn_A Thymidine kinase, VZV-T 97.9 1.6E-05 5.3E-10 62.5 6.2 22 1-22 17-39 (341)
133 3foz_A TRNA delta(2)-isopenten 97.9 2.5E-06 8.7E-11 65.9 1.6 30 1-30 15-44 (316)
134 3czp_A Putative polyphosphate 97.9 3.1E-05 1.1E-09 63.8 7.2 103 1-134 48-172 (500)
135 3czp_A Putative polyphosphate 97.9 3.6E-05 1.2E-09 63.4 7.6 103 1-134 305-429 (500)
136 3t15_A Ribulose bisphosphate c 97.8 5.2E-06 1.8E-10 64.1 1.3 30 1-30 41-72 (293)
137 3tvt_A Disks large 1 tumor sup 97.8 2.5E-05 8.5E-10 60.2 4.9 99 71-201 179-277 (292)
138 3syl_A Protein CBBX; photosynt 97.8 7.6E-05 2.6E-09 57.6 7.6 20 1-20 72-91 (309)
139 3bos_A Putative DNA replicatio 97.7 3.5E-05 1.2E-09 57.0 5.3 32 1-32 57-93 (242)
140 1lv7_A FTSH; alpha/beta domain 97.7 8.9E-06 3E-10 61.3 1.9 27 1-27 50-76 (257)
141 2ga8_A Hypothetical 39.9 kDa p 97.7 2.8E-06 9.5E-11 66.9 -1.1 24 1-24 29-52 (359)
142 4b4t_K 26S protease regulatory 97.7 9.5E-06 3.2E-10 65.7 1.6 27 1-27 211-237 (428)
143 3hws_A ATP-dependent CLP prote 97.7 1.4E-05 4.8E-10 63.4 2.3 28 1-28 56-83 (363)
144 2r62_A Cell division protease 97.7 1.6E-05 5.4E-10 60.3 2.4 27 1-27 49-75 (268)
145 3dm5_A SRP54, signal recogniti 97.7 0.00011 3.7E-09 59.7 7.4 31 1-31 105-140 (443)
146 4b4t_M 26S protease regulatory 97.7 1.1E-05 3.9E-10 65.3 1.6 27 1-27 220-246 (434)
147 4b4t_L 26S protease subunit RP 97.7 1.1E-05 3.9E-10 65.4 1.6 27 1-27 220-246 (437)
148 4b4t_J 26S protease regulatory 97.7 1.1E-05 3.9E-10 64.6 1.6 27 1-27 187-213 (405)
149 1g41_A Heat shock protein HSLU 97.7 1.5E-05 5.1E-10 64.8 2.3 28 1-28 55-82 (444)
150 2qmh_A HPR kinase/phosphorylas 97.7 1.3E-05 4.3E-10 58.1 1.5 29 1-30 39-67 (205)
151 2x8a_A Nuclear valosin-contain 97.7 1.5E-05 5.2E-10 60.9 2.0 25 1-25 49-73 (274)
152 2qz4_A Paraplegin; AAA+, SPG7, 97.6 1.5E-05 5.1E-10 60.0 1.9 26 1-26 44-69 (262)
153 3cf0_A Transitional endoplasmi 97.6 1.7E-05 5.7E-10 61.4 2.0 27 1-27 54-80 (301)
154 3h4m_A Proteasome-activating n 97.6 2.1E-05 7.1E-10 60.1 2.4 26 1-26 56-81 (285)
155 3b9p_A CG5977-PA, isoform A; A 97.6 1.8E-05 6E-10 60.9 2.0 26 1-26 59-84 (297)
156 4b4t_H 26S protease regulatory 97.6 2E-05 6.8E-10 64.2 2.0 27 1-27 248-274 (467)
157 1odf_A YGR205W, hypothetical 3 97.6 1.9E-05 6.4E-10 60.9 1.6 32 1-32 36-75 (290)
158 3kl4_A SRP54, signal recogniti 97.6 0.00015 5E-09 58.9 6.9 30 1-30 102-136 (433)
159 1um8_A ATP-dependent CLP prote 97.6 2.6E-05 8.8E-10 62.2 2.3 28 1-28 77-104 (376)
160 1d2n_A N-ethylmaleimide-sensit 97.6 2.7E-05 9.2E-10 59.2 2.2 27 1-27 69-95 (272)
161 1ixz_A ATP-dependent metallopr 97.5 2.9E-05 1E-09 58.4 2.3 26 1-26 54-79 (254)
162 4b4t_I 26S protease regulatory 97.5 2.2E-05 7.5E-10 63.3 1.6 27 1-27 221-247 (437)
163 1kjw_A Postsynaptic density pr 97.5 0.00016 5.5E-09 55.8 6.3 98 71-201 184-282 (295)
164 2chg_A Replication factor C sm 97.5 0.00019 6.6E-09 52.0 6.3 20 1-20 43-62 (226)
165 1ye8_A Protein THEP1, hypothet 97.5 2.7E-05 9.2E-10 55.6 1.4 23 1-23 5-27 (178)
166 3u61_B DNA polymerase accessor 97.5 9.9E-05 3.4E-09 57.4 4.7 26 1-26 53-78 (324)
167 1ofh_A ATP-dependent HSL prote 97.5 3.4E-05 1.1E-09 59.5 1.8 25 1-25 55-79 (310)
168 1in4_A RUVB, holliday junction 97.5 3.7E-05 1.3E-09 60.4 2.1 24 1-24 56-79 (334)
169 3eie_A Vacuolar protein sortin 97.5 3.6E-05 1.2E-09 60.1 1.9 26 1-26 56-81 (322)
170 1iy2_A ATP-dependent metallopr 97.4 4.9E-05 1.7E-09 58.0 2.3 26 1-26 78-103 (278)
171 3te6_A Regulatory protein SIR3 97.4 0.00043 1.5E-08 53.9 7.3 20 1-20 50-69 (318)
172 1jbk_A CLPB protein; beta barr 97.4 4.5E-05 1.5E-09 54.2 1.6 20 1-20 48-67 (195)
173 1xwi_A SKD1 protein; VPS4B, AA 97.4 5.7E-05 1.9E-09 59.0 2.3 25 1-25 50-75 (322)
174 2qp9_X Vacuolar protein sortin 97.4 4.3E-05 1.5E-09 60.6 1.5 27 1-27 89-115 (355)
175 2p65_A Hypothetical protein PF 97.4 3.5E-05 1.2E-09 54.6 0.8 20 1-20 48-67 (187)
176 3cf2_A TER ATPase, transitiona 97.4 0.00019 6.6E-09 62.4 5.3 27 1-27 243-269 (806)
177 3d8b_A Fidgetin-like protein 1 97.4 6E-05 2.1E-09 59.7 2.0 26 1-26 122-147 (357)
178 3pfi_A Holliday junction ATP-d 97.4 8E-05 2.7E-09 58.3 2.6 27 1-27 60-86 (338)
179 3n70_A Transport activator; si 97.4 7.5E-05 2.6E-09 51.3 2.2 20 1-20 29-48 (145)
180 2c9o_A RUVB-like 1; hexameric 97.3 5.8E-05 2E-09 61.8 1.8 27 1-27 68-96 (456)
181 1sxj_A Activator 1 95 kDa subu 97.3 6.5E-05 2.2E-09 62.5 2.1 27 1-27 82-108 (516)
182 2kjq_A DNAA-related protein; s 97.3 4.4E-05 1.5E-09 52.9 0.5 20 1-20 41-60 (149)
183 1iqp_A RFCS; clamp loader, ext 97.3 0.00034 1.2E-08 54.1 5.7 20 1-20 51-70 (327)
184 2z4s_A Chromosomal replication 97.3 0.00048 1.6E-08 56.1 6.7 31 1-31 135-172 (440)
185 2ce7_A Cell division protein F 97.3 8.5E-05 2.9E-09 61.0 2.2 27 1-27 54-80 (476)
186 3vfd_A Spastin; ATPase, microt 97.3 8.9E-05 3.1E-09 59.4 2.1 27 1-27 153-179 (389)
187 3rhf_A Putative polyphosphate 97.3 0.00014 4.7E-09 55.4 2.9 103 1-134 80-204 (289)
188 3tqf_A HPR(Ser) kinase; transf 97.3 8.3E-05 2.8E-09 52.5 1.6 29 1-30 21-49 (181)
189 1znw_A Guanylate kinase, GMP k 97.3 9.5E-05 3.3E-09 53.9 2.0 21 1-21 25-45 (207)
190 1c9k_A COBU, adenosylcobinamid 97.2 8E-05 2.7E-09 53.1 1.4 22 1-23 4-25 (180)
191 1tue_A Replication protein E1; 97.2 7E-05 2.4E-09 54.5 1.0 25 1-25 63-87 (212)
192 1l8q_A Chromosomal replication 97.2 0.00011 3.9E-09 57.2 2.1 31 1-31 42-77 (324)
193 1svm_A Large T antigen; AAA+ f 97.2 0.00011 3.9E-09 58.5 2.0 26 1-26 174-199 (377)
194 3pvs_A Replication-associated 97.2 0.00014 4.9E-09 59.3 2.4 27 1-27 55-81 (447)
195 3aez_A Pantothenate kinase; tr 97.2 0.0001 3.6E-09 57.3 1.5 30 1-30 95-131 (312)
196 2zan_A Vacuolar protein sortin 97.2 0.00012 4.2E-09 59.7 2.0 25 1-25 172-197 (444)
197 1hqc_A RUVB; extended AAA-ATPa 97.2 0.00013 4.4E-09 56.6 1.9 25 1-25 43-67 (324)
198 2dhr_A FTSH; AAA+ protein, hex 97.2 0.00014 4.8E-09 60.1 2.2 26 1-26 69-94 (499)
199 2r44_A Uncharacterized protein 97.1 0.00012 4.1E-09 57.2 1.6 25 1-25 51-75 (331)
200 1xjc_A MOBB protein homolog; s 97.1 0.00014 4.6E-09 51.4 1.5 20 1-20 9-28 (169)
201 2w58_A DNAI, primosome compone 97.1 0.00013 4.5E-09 52.7 1.5 32 1-32 59-95 (202)
202 1j8m_F SRP54, signal recogniti 97.1 0.00071 2.4E-08 52.2 5.6 29 1-29 103-136 (297)
203 2xkx_A Disks large homolog 4; 97.1 0.00075 2.6E-08 58.4 6.0 103 67-201 606-708 (721)
204 2ehv_A Hypothetical protein PH 97.1 0.00016 5.4E-09 53.9 1.6 17 1-17 35-51 (251)
205 1htw_A HI0065; nucleotide-bind 97.1 0.0002 6.7E-09 50.1 1.9 20 1-20 38-57 (158)
206 4a74_A DNA repair and recombin 97.1 0.00014 4.9E-09 53.4 1.2 20 1-20 30-49 (231)
207 2j37_W Signal recognition part 97.1 0.00084 2.9E-08 55.5 5.8 30 1-30 106-140 (504)
208 2i3b_A HCR-ntpase, human cance 97.0 0.00018 6.1E-09 51.8 1.5 20 1-20 6-25 (189)
209 3pxg_A Negative regulator of g 97.0 0.0002 6.8E-09 58.8 2.0 20 1-20 206-225 (468)
210 3co5_A Putative two-component 97.0 5.4E-05 1.8E-09 51.9 -1.3 21 1-21 32-52 (143)
211 3hu3_A Transitional endoplasmi 97.0 0.0002 6.9E-09 59.1 1.9 31 1-31 243-275 (489)
212 1njg_A DNA polymerase III subu 97.0 0.0002 7E-09 52.6 1.5 21 1-21 50-70 (250)
213 2v1u_A Cell division control p 97.0 0.0002 6.7E-09 56.8 1.4 20 1-20 49-68 (387)
214 1np6_A Molybdopterin-guanine d 97.0 0.00023 7.9E-09 50.5 1.5 20 1-20 11-30 (174)
215 3m6a_A ATP-dependent protease 97.0 0.00025 8.6E-09 59.3 1.9 25 1-25 113-137 (543)
216 3uk6_A RUVB-like 2; hexameric 97.0 0.0002 6.8E-09 56.6 1.3 22 1-22 75-96 (368)
217 1ypw_A Transitional endoplasmi 97.0 0.00028 9.7E-09 61.7 2.3 26 1-26 243-268 (806)
218 4fcw_A Chaperone protein CLPB; 96.9 0.00023 7.9E-09 54.8 1.5 20 1-20 52-71 (311)
219 3tif_A Uncharacterized ABC tra 96.9 0.00021 7.1E-09 53.3 1.0 20 1-20 36-55 (235)
220 1lw7_A Transcriptional regulat 96.9 0.00026 9E-09 56.2 1.6 23 1-23 175-197 (365)
221 2cvh_A DNA repair and recombin 96.9 0.00027 9.1E-09 51.6 1.6 29 1-29 25-55 (220)
222 1ypw_A Transitional endoplasmi 96.9 0.00035 1.2E-08 61.2 2.5 26 1-26 516-541 (806)
223 2v9p_A Replication protein E1; 96.9 0.00025 8.7E-09 54.9 1.4 20 1-20 131-150 (305)
224 3kfv_A Tight junction protein 96.9 0.0017 5.7E-08 50.2 5.9 103 71-201 188-290 (308)
225 2eyu_A Twitching motility prot 96.9 0.00028 9.7E-09 53.4 1.5 20 1-20 30-49 (261)
226 1sxj_C Activator 1 40 kDa subu 96.9 0.00027 9.1E-09 55.5 1.4 20 1-20 51-70 (340)
227 2f1r_A Molybdopterin-guanine d 96.9 0.00011 3.9E-09 52.0 -0.7 20 1-20 7-26 (171)
228 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0003 1E-08 51.6 1.6 20 1-20 28-47 (235)
229 2onk_A Molybdate/tungstate ABC 96.9 0.00031 1.1E-08 52.5 1.6 20 1-20 29-48 (240)
230 2qby_B CDC6 homolog 3, cell di 96.9 0.00026 8.9E-09 56.2 1.2 20 1-20 50-69 (384)
231 2bjv_A PSP operon transcriptio 96.9 0.00039 1.3E-08 52.5 2.1 21 1-21 34-54 (265)
232 2pcj_A ABC transporter, lipopr 96.8 0.00024 8.1E-09 52.5 0.7 20 1-20 35-54 (224)
233 3b85_A Phosphate starvation-in 96.8 0.00029 1E-08 51.5 1.1 19 1-19 27-45 (208)
234 1n0w_A DNA repair protein RAD5 96.8 0.00036 1.2E-08 51.7 1.6 19 1-19 29-47 (243)
235 2qby_A CDC6 homolog 1, cell di 96.8 0.00036 1.2E-08 55.2 1.6 20 1-20 50-69 (386)
236 3cf2_A TER ATPase, transitiona 96.8 0.0004 1.4E-08 60.5 2.0 27 1-27 516-542 (806)
237 3gfo_A Cobalt import ATP-bindi 96.8 0.00031 1.1E-08 53.6 1.1 20 1-20 39-58 (275)
238 1fnn_A CDC6P, cell division co 96.8 0.00038 1.3E-08 55.2 1.6 20 1-20 49-68 (389)
239 4g1u_C Hemin import ATP-bindin 96.8 0.00032 1.1E-08 53.3 1.1 20 1-20 42-61 (266)
240 1sxj_D Activator 1 41 kDa subu 96.8 0.00038 1.3E-08 54.6 1.5 21 1-21 63-83 (353)
241 2cbz_A Multidrug resistance-as 96.8 0.00033 1.1E-08 52.3 1.0 20 1-20 36-55 (237)
242 1g8p_A Magnesium-chelatase 38 96.8 0.0003 1E-08 55.2 0.8 21 1-21 50-70 (350)
243 2ffh_A Protein (FFH); SRP54, s 96.8 0.0029 9.9E-08 51.2 6.5 30 1-30 103-137 (425)
244 1sgw_A Putative ABC transporte 96.7 0.00037 1.3E-08 51.1 1.1 20 1-20 40-59 (214)
245 3pxi_A Negative regulator of g 96.7 0.00048 1.7E-08 59.9 2.0 20 1-20 206-225 (758)
246 2d2e_A SUFC protein; ABC-ATPas 96.7 0.00045 1.5E-08 51.9 1.6 19 1-19 34-52 (250)
247 1b0u_A Histidine permease; ABC 96.7 0.00037 1.3E-08 52.8 1.1 20 1-20 37-56 (262)
248 2orw_A Thymidine kinase; TMTK, 96.7 0.00039 1.3E-08 49.8 1.1 20 1-20 8-27 (184)
249 1rj9_A FTSY, signal recognitio 96.7 0.00045 1.5E-08 53.5 1.5 20 1-20 107-126 (304)
250 1sxj_E Activator 1 40 kDa subu 96.7 0.00036 1.2E-08 54.8 1.0 20 1-20 41-60 (354)
251 1mv5_A LMRA, multidrug resista 96.7 0.0004 1.4E-08 52.0 1.1 20 1-20 33-52 (243)
252 2ff7_A Alpha-hemolysin translo 96.7 0.0004 1.4E-08 52.1 1.0 20 1-20 40-59 (247)
253 1ji0_A ABC transporter; ATP bi 96.7 0.00041 1.4E-08 51.8 1.0 20 1-20 37-56 (240)
254 1g6h_A High-affinity branched- 96.7 0.00041 1.4E-08 52.4 1.0 20 1-20 38-57 (257)
255 2olj_A Amino acid ABC transpor 96.7 0.00043 1.5E-08 52.5 1.1 20 1-20 55-74 (263)
256 2zu0_C Probable ATP-dependent 96.7 0.00054 1.9E-08 52.0 1.6 19 1-19 51-69 (267)
257 1vma_A Cell division protein F 96.7 0.00053 1.8E-08 53.1 1.5 30 1-30 109-143 (306)
258 3tsz_A Tight junction protein 96.7 0.001 3.5E-08 53.3 3.3 53 71-131 279-331 (391)
259 2pze_A Cystic fibrosis transme 96.7 0.00045 1.5E-08 51.2 1.1 20 1-20 39-58 (229)
260 3b9q_A Chloroplast SRP recepto 96.7 0.00054 1.8E-08 53.0 1.5 20 1-20 105-124 (302)
261 1vpl_A ABC transporter, ATP-bi 96.7 0.00046 1.6E-08 52.1 1.1 20 1-20 46-65 (256)
262 2r2a_A Uncharacterized protein 96.6 0.0007 2.4E-08 49.1 2.0 19 1-19 10-28 (199)
263 2qi9_C Vitamin B12 import ATP- 96.6 0.00048 1.6E-08 51.8 1.1 20 1-20 31-50 (249)
264 1cr0_A DNA primase/helicase; R 96.6 0.00049 1.7E-08 52.8 1.2 20 1-20 40-59 (296)
265 1xp8_A RECA protein, recombina 96.6 0.0045 1.5E-07 49.1 6.7 29 1-29 79-112 (366)
266 2ixe_A Antigen peptide transpo 96.6 0.00047 1.6E-08 52.5 1.0 20 1-20 50-69 (271)
267 3e70_C DPA, signal recognition 96.6 0.00058 2E-08 53.5 1.5 20 1-20 134-153 (328)
268 2ghi_A Transport protein; mult 96.6 0.00049 1.7E-08 52.1 1.0 20 1-20 51-70 (260)
269 2qen_A Walker-type ATPase; unk 96.6 0.00079 2.7E-08 52.5 2.3 30 1-30 36-65 (350)
270 4a1f_A DNAB helicase, replicat 96.6 0.0061 2.1E-07 47.8 7.3 20 1-20 51-70 (338)
271 3bh0_A DNAB-like replicative h 96.6 0.0089 3E-07 46.4 8.1 20 1-20 73-92 (315)
272 4dey_A Voltage-dependent L-typ 96.6 0.008 2.7E-07 46.8 7.7 100 72-200 220-320 (337)
273 2ihy_A ABC transporter, ATP-bi 96.6 0.00054 1.8E-08 52.4 1.1 20 1-20 52-71 (279)
274 1jr3_A DNA polymerase III subu 96.6 0.00066 2.3E-08 53.6 1.7 22 1-22 43-64 (373)
275 2yz2_A Putative ABC transporte 96.6 0.00054 1.9E-08 52.0 1.0 20 1-20 38-57 (266)
276 2dr3_A UPF0273 protein PH0284; 96.6 0.00062 2.1E-08 50.5 1.2 28 1-28 28-60 (247)
277 2qgz_A Helicase loader, putati 96.6 0.00068 2.3E-08 52.6 1.5 32 1-32 157-194 (308)
278 2nq2_C Hypothetical ABC transp 96.5 0.00058 2E-08 51.4 1.0 20 1-20 36-55 (253)
279 1r6b_X CLPA protein; AAA+, N-t 96.5 0.00073 2.5E-08 58.7 1.6 30 1-30 493-524 (758)
280 3fvq_A Fe(3+) IONS import ATP- 96.5 0.00067 2.3E-08 53.7 1.2 20 1-20 35-54 (359)
281 2pjz_A Hypothetical protein ST 96.5 0.00066 2.3E-08 51.4 1.1 20 1-20 35-54 (263)
282 1nlf_A Regulatory protein REPA 96.5 0.00068 2.3E-08 51.6 1.2 19 1-19 35-53 (279)
283 2chq_A Replication factor C sm 96.5 0.00078 2.7E-08 51.9 1.5 20 1-20 43-62 (319)
284 3rlf_A Maltose/maltodextrin im 96.5 0.00083 2.8E-08 53.6 1.6 20 1-20 34-53 (381)
285 3sop_A Neuronal-specific septi 96.5 0.00069 2.4E-08 51.5 1.1 20 1-20 7-26 (270)
286 3tui_C Methionine import ATP-b 96.5 0.00085 2.9E-08 53.2 1.6 20 1-20 59-78 (366)
287 3nbx_X ATPase RAVA; AAA+ ATPas 96.5 0.00066 2.3E-08 56.1 1.0 21 1-21 46-66 (500)
288 2ewv_A Twitching motility prot 96.5 0.00081 2.8E-08 53.5 1.4 20 1-20 141-160 (372)
289 2gza_A Type IV secretion syste 96.5 0.00074 2.5E-08 53.6 1.2 21 1-21 180-200 (361)
290 1z47_A CYSA, putative ABC-tran 96.5 0.00087 3E-08 53.0 1.6 20 1-20 46-65 (355)
291 2yyz_A Sugar ABC transporter, 96.4 0.00091 3.1E-08 53.0 1.6 20 1-20 34-53 (359)
292 2px0_A Flagellar biosynthesis 96.4 0.00077 2.6E-08 52.0 1.1 30 1-30 110-145 (296)
293 2b8t_A Thymidine kinase; deoxy 96.4 0.00091 3.1E-08 49.4 1.5 20 1-20 17-36 (223)
294 2qm8_A GTPase/ATPase; G protei 96.4 0.0009 3.1E-08 52.6 1.5 20 1-20 60-79 (337)
295 2og2_A Putative signal recogni 96.4 0.0009 3.1E-08 53.0 1.5 20 1-20 162-181 (359)
296 1u0j_A DNA replication protein 96.4 0.0013 4.3E-08 49.9 2.2 21 1-21 109-129 (267)
297 1pzn_A RAD51, DNA repair and r 96.4 0.0008 2.7E-08 53.1 1.2 20 1-20 136-155 (349)
298 2it1_A 362AA long hypothetical 96.4 0.00095 3.3E-08 52.9 1.6 20 1-20 34-53 (362)
299 1knx_A Probable HPR(Ser) kinas 96.4 0.00086 2.9E-08 51.9 1.3 29 1-30 152-180 (312)
300 3jvv_A Twitching mobility prot 96.4 0.00092 3.2E-08 52.9 1.5 20 1-20 128-147 (356)
301 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0011 3.8E-08 51.6 1.8 27 1-27 128-156 (331)
302 1v43_A Sugar-binding transport 96.4 0.001 3.5E-08 52.9 1.6 20 1-20 42-61 (372)
303 1oix_A RAS-related protein RAB 96.4 0.00098 3.4E-08 47.6 1.4 20 1-20 34-53 (191)
304 3nh6_A ATP-binding cassette SU 96.4 0.00047 1.6E-08 53.4 -0.3 20 1-20 85-104 (306)
305 3kta_A Chromosome segregation 96.4 0.0012 4E-08 46.8 1.7 21 1-21 31-51 (182)
306 1g29_1 MALK, maltose transport 96.4 0.001 3.6E-08 52.9 1.6 20 1-20 34-53 (372)
307 1sxj_B Activator 1 37 kDa subu 96.4 0.001 3.5E-08 51.3 1.5 20 1-20 47-66 (323)
308 2f9l_A RAB11B, member RAS onco 96.4 0.0012 4.1E-08 47.4 1.7 19 1-19 10-28 (199)
309 1qvr_A CLPB protein; coiled co 96.4 0.00091 3.1E-08 59.0 1.3 20 1-20 196-215 (854)
310 1ko7_A HPR kinase/phosphatase; 96.3 0.0012 4.2E-08 51.1 1.7 29 1-30 149-177 (314)
311 2yhs_A FTSY, cell division pro 96.3 0.0011 3.9E-08 54.4 1.5 20 1-20 298-317 (503)
312 1w5s_A Origin recognition comp 96.3 0.0017 5.7E-08 51.9 2.4 20 1-20 57-76 (412)
313 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.00087 3E-08 52.5 0.7 21 1-21 176-196 (330)
314 2www_A Methylmalonic aciduria 96.3 0.0012 4.2E-08 52.0 1.5 20 1-20 79-98 (349)
315 2q6t_A DNAB replication FORK h 96.3 0.014 4.9E-07 47.4 7.9 19 1-19 205-223 (444)
316 3d31_A Sulfate/molybdate ABC t 96.3 0.00082 2.8E-08 53.0 0.5 20 1-20 31-50 (348)
317 1ojl_A Transcriptional regulat 96.3 0.0013 4.5E-08 50.8 1.6 20 1-20 30-49 (304)
318 3k1j_A LON protease, ATP-depen 96.2 0.0015 5.2E-08 55.3 2.0 21 1-21 65-85 (604)
319 2bbs_A Cystic fibrosis transme 96.2 0.001 3.4E-08 51.2 0.7 20 1-20 69-88 (290)
320 2wji_A Ferrous iron transport 96.2 0.0015 5.2E-08 45.3 1.6 18 1-18 8-25 (165)
321 1a5t_A Delta prime, HOLB; zinc 96.2 0.0017 5.8E-08 50.8 1.9 23 1-23 29-51 (334)
322 3gd7_A Fusion complex of cysti 96.2 0.0013 4.4E-08 52.7 1.2 20 1-20 52-71 (390)
323 2r6a_A DNAB helicase, replicat 96.2 0.015 5.2E-07 47.4 7.6 20 1-20 208-227 (454)
324 1nij_A Hypothetical protein YJ 96.2 0.0012 4.2E-08 51.3 1.0 19 1-19 9-27 (318)
325 2wsm_A Hydrogenase expression/ 96.2 0.0016 5.4E-08 47.5 1.5 20 1-20 35-54 (221)
326 3bgw_A DNAB-like replicative h 96.1 0.016 5.5E-07 47.2 7.5 20 1-20 202-221 (444)
327 1p9r_A General secretion pathw 96.1 0.0016 5.6E-08 52.6 1.6 21 1-21 172-192 (418)
328 1qhl_A Protein (cell division 96.1 0.00089 3.1E-08 49.6 0.1 20 1-20 32-51 (227)
329 2yv5_A YJEQ protein; hydrolase 96.1 0.0017 5.7E-08 50.2 1.6 20 1-21 170-189 (302)
330 2rcn_A Probable GTPase ENGC; Y 96.1 0.0017 5.9E-08 51.3 1.6 20 1-20 220-239 (358)
331 3p32_A Probable GTPase RV1496/ 96.1 0.0017 5.7E-08 51.3 1.5 28 1-28 84-116 (355)
332 3shw_A Tight junction protein 96.1 0.0037 1.3E-07 51.1 3.5 50 70-126 270-319 (468)
333 3lda_A DNA repair protein RAD5 96.1 0.0015 5E-08 52.5 1.2 17 1-17 183-199 (400)
334 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0016 5.5E-08 53.3 1.4 20 1-20 143-162 (460)
335 1oxx_K GLCV, glucose, ABC tran 96.1 0.00084 2.9E-08 53.0 -0.3 20 1-20 36-55 (353)
336 3hr8_A Protein RECA; alpha and 96.1 0.0015 5.2E-08 51.6 1.1 29 1-29 66-99 (356)
337 2zts_A Putative uncharacterize 96.1 0.0022 7.4E-08 47.6 1.9 18 1-18 35-52 (251)
338 1zu4_A FTSY; GTPase, signal re 96.1 0.0018 6.2E-08 50.4 1.5 30 1-30 110-144 (320)
339 2v3c_C SRP54, signal recogniti 96.1 0.0016 5.5E-08 52.9 1.2 30 1-30 104-138 (432)
340 1q57_A DNA primase/helicase; d 96.1 0.032 1.1E-06 46.1 9.1 20 1-20 247-266 (503)
341 1xx6_A Thymidine kinase; NESG, 96.1 0.0019 6.5E-08 46.5 1.5 20 1-20 13-32 (191)
342 3pxi_A Negative regulator of g 96.1 0.002 6.8E-08 56.0 1.8 31 1-31 526-561 (758)
343 2zej_A Dardarin, leucine-rich 96.1 0.0017 5.7E-08 46.0 1.1 18 1-18 7-24 (184)
344 2dyk_A GTP-binding protein; GT 96.0 0.0023 7.9E-08 43.8 1.8 19 1-19 6-24 (161)
345 1z2a_A RAS-related protein RAB 96.0 0.0024 8.3E-08 44.0 1.7 19 1-19 10-28 (168)
346 1r6b_X CLPA protein; AAA+, N-t 96.0 0.0022 7.4E-08 55.8 1.7 20 1-20 212-231 (758)
347 1yrb_A ATP(GTP)binding protein 96.0 0.0022 7.6E-08 48.0 1.5 28 1-28 19-50 (262)
348 2wjg_A FEOB, ferrous iron tran 95.9 0.0025 8.6E-08 45.0 1.6 19 1-19 12-30 (188)
349 1qvr_A CLPB protein; coiled co 95.9 0.0022 7.4E-08 56.6 1.4 20 1-20 593-612 (854)
350 3upu_A ATP-dependent DNA helic 95.9 0.0023 7.9E-08 52.3 1.5 20 1-20 50-69 (459)
351 1kao_A RAP2A; GTP-binding prot 95.9 0.0028 9.7E-08 43.5 1.8 19 1-19 8-26 (167)
352 1u0l_A Probable GTPase ENGC; p 95.9 0.0019 6.3E-08 49.9 0.9 19 1-19 174-192 (301)
353 2zr9_A Protein RECA, recombina 95.9 0.0021 7.3E-08 50.7 1.2 29 1-29 66-99 (349)
354 2hf9_A Probable hydrogenase ni 95.9 0.0025 8.6E-08 46.6 1.5 20 1-20 43-62 (226)
355 2r8r_A Sensor protein; KDPD, P 95.9 0.0036 1.2E-07 46.2 2.2 29 1-29 11-44 (228)
356 2oap_1 GSPE-2, type II secreti 95.9 0.0022 7.5E-08 53.2 1.2 21 1-21 265-285 (511)
357 2gj8_A MNME, tRNA modification 95.9 0.0024 8.1E-08 44.8 1.2 19 1-19 9-27 (172)
358 1f2t_A RAD50 ABC-ATPase; DNA d 95.9 0.0029 1E-07 43.5 1.6 20 1-20 28-47 (149)
359 2fna_A Conserved hypothetical 95.9 0.0029 9.9E-08 49.3 1.8 28 1-28 35-64 (357)
360 1u8z_A RAS-related protein RAL 95.8 0.0031 1.1E-07 43.3 1.7 19 1-19 9-27 (168)
361 2qag_B Septin-6, protein NEDD5 95.8 0.0025 8.4E-08 51.6 1.3 19 1-19 47-65 (427)
362 2ce2_X GTPase HRAS; signaling 95.8 0.0027 9.3E-08 43.5 1.3 19 1-19 8-26 (166)
363 1v5w_A DMC1, meiotic recombina 95.8 0.003 1E-07 49.7 1.6 19 1-19 127-145 (343)
364 2nzj_A GTP-binding protein REM 95.8 0.0032 1.1E-07 43.7 1.6 19 1-19 9-27 (175)
365 2ged_A SR-beta, signal recogni 95.8 0.0035 1.2E-07 44.4 1.8 19 1-19 53-71 (193)
366 1ky3_A GTP-binding protein YPT 95.8 0.0036 1.2E-07 43.7 1.8 19 1-19 13-31 (182)
367 1wms_A RAB-9, RAB9, RAS-relate 95.8 0.0036 1.2E-07 43.6 1.8 19 1-19 12-30 (177)
368 3e1s_A Exodeoxyribonuclease V, 95.7 0.003 1E-07 53.2 1.5 20 1-20 209-228 (574)
369 1z0j_A RAB-22, RAS-related pro 95.7 0.0037 1.2E-07 43.1 1.8 19 1-19 11-29 (170)
370 1pui_A ENGB, probable GTP-bind 95.7 0.0014 4.7E-08 47.4 -0.5 18 1-18 31-48 (210)
371 1ek0_A Protein (GTP-binding pr 95.7 0.0037 1.3E-07 43.1 1.7 19 1-19 8-26 (170)
372 3q85_A GTP-binding protein REM 95.7 0.0034 1.2E-07 43.3 1.6 18 1-18 7-24 (169)
373 1z08_A RAS-related protein RAB 95.7 0.0038 1.3E-07 43.1 1.8 19 1-19 11-29 (170)
374 1c1y_A RAS-related protein RAP 95.7 0.0037 1.3E-07 42.9 1.7 19 1-19 8-26 (167)
375 1nrj_B SR-beta, signal recogni 95.7 0.0037 1.3E-07 45.4 1.7 20 1-20 17-36 (218)
376 2erx_A GTP-binding protein DI- 95.7 0.0036 1.2E-07 43.2 1.6 18 1-18 8-25 (172)
377 3b5x_A Lipid A export ATP-bind 95.7 0.0032 1.1E-07 53.1 1.5 20 1-20 374-393 (582)
378 3euj_A Chromosome partition pr 95.7 0.0034 1.2E-07 51.6 1.6 20 1-20 34-53 (483)
379 1ls1_A Signal recognition part 95.7 0.0034 1.2E-07 48.3 1.5 20 1-20 103-122 (295)
380 2z43_A DNA repair and recombin 95.7 0.0029 1E-07 49.3 1.2 20 1-20 112-131 (324)
381 2hxs_A RAB-26, RAS-related pro 95.7 0.004 1.4E-07 43.4 1.7 19 1-19 11-29 (178)
382 2p67_A LAO/AO transport system 95.7 0.003 1E-07 49.6 1.2 20 1-20 61-80 (341)
383 3q72_A GTP-binding protein RAD 95.7 0.0029 1E-07 43.5 1.0 17 1-17 7-23 (166)
384 3t1o_A Gliding protein MGLA; G 95.7 0.0041 1.4E-07 44.0 1.8 21 1-21 19-39 (198)
385 1yqt_A RNAse L inhibitor; ATP- 95.7 0.0035 1.2E-07 52.3 1.6 20 1-20 52-71 (538)
386 1tq4_A IIGP1, interferon-induc 95.6 0.0032 1.1E-07 50.8 1.2 19 1-19 74-92 (413)
387 1g16_A RAS-related protein SEC 95.6 0.0036 1.2E-07 43.1 1.3 19 1-19 8-26 (170)
388 1r2q_A RAS-related protein RAB 95.6 0.0043 1.5E-07 42.7 1.7 19 1-19 11-29 (170)
389 1u94_A RECA protein, recombina 95.6 0.0045 1.5E-07 48.9 1.8 28 1-28 68-100 (356)
390 3f9v_A Minichromosome maintena 95.6 0.0016 5.5E-08 55.0 -0.8 24 1-24 332-355 (595)
391 3szr_A Interferon-induced GTP- 95.5 0.0056 1.9E-07 51.9 2.5 19 1-19 50-68 (608)
392 1r8s_A ADP-ribosylation factor 95.5 0.005 1.7E-07 42.3 1.8 19 1-19 5-23 (164)
393 3con_A GTPase NRAS; structural 95.5 0.0046 1.6E-07 43.7 1.7 19 1-19 26-44 (190)
394 1upt_A ARL1, ADP-ribosylation 95.5 0.0048 1.6E-07 42.6 1.7 19 1-19 12-30 (171)
395 2i1q_A DNA repair and recombin 95.5 0.0037 1.3E-07 48.6 1.2 19 1-19 103-121 (322)
396 1tf7_A KAIC; homohexamer, hexa 95.5 0.0036 1.2E-07 52.1 1.2 16 1-16 44-59 (525)
397 3b60_A Lipid A export ATP-bind 95.5 0.0029 9.9E-08 53.4 0.6 20 1-20 374-393 (582)
398 1z0f_A RAB14, member RAS oncog 95.5 0.0048 1.7E-07 42.9 1.7 19 1-19 20-38 (179)
399 3bc1_A RAS-related protein RAB 95.5 0.0048 1.6E-07 43.5 1.7 19 1-19 16-34 (195)
400 2obl_A ESCN; ATPase, hydrolase 95.5 0.0048 1.6E-07 48.6 1.8 21 1-21 76-96 (347)
401 2lkc_A Translation initiation 95.5 0.0048 1.6E-07 43.0 1.6 18 1-18 13-30 (178)
402 4dsu_A GTPase KRAS, isoform 2B 95.5 0.0051 1.7E-07 43.2 1.8 19 1-19 9-27 (189)
403 2fn4_A P23, RAS-related protei 95.5 0.0045 1.5E-07 43.2 1.4 19 1-19 14-32 (181)
404 3tw8_B RAS-related protein RAB 95.5 0.0045 1.5E-07 43.1 1.4 18 1-18 14-31 (181)
405 1m7b_A RND3/RHOE small GTP-bin 95.5 0.0044 1.5E-07 43.7 1.3 19 1-19 12-30 (184)
406 3clv_A RAB5 protein, putative; 95.5 0.0052 1.8E-07 43.6 1.8 19 1-19 12-30 (208)
407 2dpy_A FLII, flagellum-specifi 95.5 0.005 1.7E-07 50.1 1.8 21 1-21 162-182 (438)
408 2oil_A CATX-8, RAS-related pro 95.4 0.0053 1.8E-07 43.5 1.7 19 1-19 30-48 (193)
409 1m2o_B GTP-binding protein SAR 95.4 0.0046 1.6E-07 44.0 1.3 19 1-19 28-46 (190)
410 3ozx_A RNAse L inhibitor; ATP 95.4 0.004 1.4E-07 52.0 1.1 20 1-20 30-49 (538)
411 2efe_B Small GTP-binding prote 95.4 0.0057 2E-07 42.7 1.8 19 1-19 17-35 (181)
412 2qnr_A Septin-2, protein NEDD5 95.4 0.0036 1.2E-07 48.3 0.7 18 1-18 23-40 (301)
413 2a9k_A RAS-related protein RAL 95.4 0.0058 2E-07 42.8 1.7 19 1-19 23-41 (187)
414 1t9h_A YLOQ, probable GTPase E 95.4 0.0015 5E-08 50.7 -1.6 19 1-19 178-196 (307)
415 2g6b_A RAS-related protein RAB 95.4 0.0058 2E-07 42.6 1.7 19 1-19 15-33 (180)
416 3j16_B RLI1P; ribosome recycli 95.4 0.0052 1.8E-07 52.1 1.6 20 1-20 108-127 (608)
417 1mh1_A RAC1; GTP-binding, GTPa 95.3 0.006 2E-07 42.7 1.7 19 1-19 10-28 (186)
418 3qf4_B Uncharacterized ABC tra 95.3 0.0033 1.1E-07 53.2 0.4 20 1-20 386-405 (598)
419 2bme_A RAB4A, RAS-related prot 95.3 0.0051 1.8E-07 43.2 1.3 19 1-19 15-33 (186)
420 1svi_A GTP-binding protein YSX 95.3 0.0044 1.5E-07 44.0 1.0 19 1-19 28-46 (195)
421 3ozx_A RNAse L inhibitor; ATP 95.3 0.0044 1.5E-07 51.7 1.1 20 1-20 299-318 (538)
422 2cxx_A Probable GTP-binding pr 95.3 0.0045 1.5E-07 43.6 1.0 19 1-19 6-24 (190)
423 3ihw_A Centg3; RAS, centaurin, 95.3 0.0063 2.1E-07 43.1 1.8 19 1-19 25-43 (184)
424 3kkq_A RAS-related protein M-R 95.3 0.0058 2E-07 42.8 1.6 19 1-19 23-41 (183)
425 2y8e_A RAB-protein 6, GH09086P 95.3 0.005 1.7E-07 42.8 1.2 19 1-19 19-37 (179)
426 3k53_A Ferrous iron transport 95.3 0.0048 1.7E-07 46.7 1.2 19 1-19 8-26 (271)
427 2yl4_A ATP-binding cassette SU 95.3 0.0033 1.1E-07 53.1 0.3 20 1-20 375-394 (595)
428 1vg8_A RAS-related protein RAB 95.3 0.0066 2.2E-07 43.5 1.8 19 1-19 13-31 (207)
429 1ega_A Protein (GTP-binding pr 95.3 0.0057 2E-07 47.1 1.5 19 1-19 13-31 (301)
430 1yqt_A RNAse L inhibitor; ATP- 95.3 0.0058 2E-07 51.0 1.6 20 1-20 317-336 (538)
431 2qag_C Septin-7; cell cycle, c 95.2 0.0049 1.7E-07 49.8 1.1 19 1-19 36-54 (418)
432 2j9r_A Thymidine kinase; TK1, 95.2 0.006 2.1E-07 44.6 1.5 20 1-20 33-52 (214)
433 2gf9_A RAS-related protein RAB 95.2 0.0067 2.3E-07 42.9 1.7 19 1-19 27-45 (189)
434 3lxx_A GTPase IMAP family memb 95.2 0.0064 2.2E-07 45.0 1.6 19 1-19 34-52 (239)
435 2atv_A RERG, RAS-like estrogen 95.2 0.007 2.4E-07 43.1 1.8 19 1-19 33-51 (196)
436 1fzq_A ADP-ribosylation factor 95.2 0.0052 1.8E-07 43.3 1.0 19 1-19 21-39 (181)
437 2bov_A RAla, RAS-related prote 95.2 0.0071 2.4E-07 43.2 1.7 19 1-19 19-37 (206)
438 1tf7_A KAIC; homohexamer, hexa 95.2 0.0055 1.9E-07 51.0 1.2 20 1-20 286-305 (525)
439 3bk7_A ABC transporter ATP-bin 95.2 0.0052 1.8E-07 52.0 1.1 20 1-20 122-141 (607)
440 3tkl_A RAS-related protein RAB 95.2 0.0073 2.5E-07 42.8 1.7 19 1-19 21-39 (196)
441 4a82_A Cystic fibrosis transme 95.2 0.0026 9E-08 53.6 -0.7 20 1-20 372-391 (578)
442 3c5c_A RAS-like protein 12; GD 95.2 0.0075 2.6E-07 42.7 1.8 19 1-19 26-44 (187)
443 3bwd_D RAC-like GTP-binding pr 95.2 0.0074 2.5E-07 42.1 1.7 19 1-19 13-31 (182)
444 1z06_A RAS-related protein RAB 95.1 0.0076 2.6E-07 42.6 1.8 19 1-19 25-43 (189)
445 3io5_A Recombination and repai 95.1 0.0063 2.2E-07 47.2 1.4 19 1-19 33-51 (333)
446 3bk7_A ABC transporter ATP-bin 95.1 0.0065 2.2E-07 51.5 1.6 20 1-20 387-406 (607)
447 1zd9_A ADP-ribosylation factor 95.1 0.0075 2.6E-07 42.6 1.7 19 1-19 27-45 (188)
448 4ag6_A VIRB4 ATPase, type IV s 95.1 0.0066 2.3E-07 48.5 1.5 20 1-20 40-59 (392)
449 3pqc_A Probable GTP-binding pr 95.1 0.0055 1.9E-07 43.3 1.0 19 1-19 28-46 (195)
450 2fg5_A RAB-22B, RAS-related pr 95.1 0.0067 2.3E-07 43.1 1.4 19 1-19 28-46 (192)
451 1ksh_A ARF-like protein 2; sma 95.1 0.0068 2.3E-07 42.7 1.4 19 1-19 23-41 (186)
452 1zbd_A Rabphilin-3A; G protein 95.1 0.0072 2.5E-07 43.2 1.6 19 1-19 13-31 (203)
453 2a5j_A RAS-related protein RAB 95.1 0.008 2.7E-07 42.6 1.7 19 1-19 26-44 (191)
454 1x3s_A RAS-related protein RAB 95.1 0.0079 2.7E-07 42.5 1.7 19 1-19 20-38 (195)
455 3dz8_A RAS-related protein RAB 95.1 0.0071 2.4E-07 42.9 1.5 20 1-20 28-47 (191)
456 3qf7_A RAD50; ABC-ATPase, ATPa 95.1 0.0072 2.5E-07 47.9 1.6 18 1-18 28-45 (365)
457 3t5g_A GTP-binding protein RHE 95.1 0.0064 2.2E-07 42.5 1.2 19 1-19 11-29 (181)
458 3j16_B RLI1P; ribosome recycli 95.1 0.0071 2.4E-07 51.2 1.6 20 1-20 383-402 (608)
459 2iwr_A Centaurin gamma 1; ANK 95.1 0.0055 1.9E-07 42.7 0.8 19 1-19 12-30 (178)
460 2p5s_A RAS and EF-hand domain 95.1 0.0082 2.8E-07 42.9 1.7 19 1-19 33-51 (199)
461 3cbq_A GTP-binding protein REM 95.0 0.0057 2E-07 43.7 0.9 17 1-17 28-44 (195)
462 2ew1_A RAS-related protein RAB 95.0 0.0071 2.4E-07 43.5 1.3 19 1-19 31-49 (201)
463 1f6b_A SAR1; gtpases, N-termin 95.0 0.0051 1.7E-07 44.1 0.6 18 1-18 30-47 (198)
464 3qf4_A ABC transporter, ATP-bi 95.0 0.0036 1.2E-07 52.8 -0.3 20 1-20 374-393 (587)
465 3reg_A RHO-like small GTPase; 95.0 0.0086 2.9E-07 42.5 1.7 19 1-19 28-46 (194)
466 3oes_A GTPase rhebl1; small GT 95.0 0.0073 2.5E-07 43.2 1.3 19 1-19 29-47 (201)
467 1gwn_A RHO-related GTP-binding 95.0 0.0074 2.5E-07 43.6 1.3 19 1-19 33-51 (205)
468 2cjw_A GTP-binding protein GEM 95.0 0.0082 2.8E-07 42.8 1.6 19 1-19 11-29 (192)
469 2fh5_B SR-beta, signal recogni 95.0 0.0088 3E-07 43.2 1.7 19 1-19 12-30 (214)
470 1zcb_A G alpha I/13; GTP-bindi 95.0 0.0075 2.5E-07 47.8 1.4 18 1-18 38-55 (362)
471 2gf0_A GTP-binding protein DI- 95.0 0.0078 2.7E-07 42.7 1.4 18 1-18 13-30 (199)
472 3qks_A DNA double-strand break 95.0 0.0086 2.9E-07 43.3 1.6 21 1-21 28-48 (203)
473 1moz_A ARL1, ADP-ribosylation 94.9 0.0044 1.5E-07 43.4 0.0 17 1-17 23-39 (183)
474 1zj6_A ADP-ribosylation factor 94.9 0.0075 2.5E-07 42.6 1.2 18 1-18 21-38 (187)
475 3cmw_A Protein RECA, recombina 94.9 0.047 1.6E-06 51.4 6.5 100 1-113 388-516 (1706)
476 2bcg_Y Protein YP2, GTP-bindin 94.9 0.0082 2.8E-07 43.1 1.3 19 1-19 13-31 (206)
477 3cph_A RAS-related protein SEC 94.9 0.0096 3.3E-07 42.8 1.7 19 1-19 25-43 (213)
478 4b3f_X DNA-binding protein smu 94.9 0.0082 2.8E-07 51.2 1.5 19 1-19 210-228 (646)
479 2a5y_B CED-4; apoptosis; HET: 94.9 0.009 3.1E-07 49.9 1.7 18 1-18 157-174 (549)
480 2xxa_A Signal recognition part 94.9 0.0085 2.9E-07 48.6 1.5 30 1-30 105-140 (433)
481 1w36_D RECD, exodeoxyribonucle 94.8 0.0086 2.9E-07 50.8 1.5 20 1-20 169-188 (608)
482 1ni3_A YCHF GTPase, YCHF GTP-b 94.8 0.0085 2.9E-07 48.0 1.3 18 1-18 25-42 (392)
483 2il1_A RAB12; G-protein, GDP, 94.8 0.0091 3.1E-07 42.4 1.4 18 1-18 31-48 (192)
484 1z6t_A APAF-1, apoptotic prote 94.8 0.0093 3.2E-07 50.1 1.6 17 1-17 152-168 (591)
485 2o52_A RAS-related protein RAB 94.8 0.0086 2.9E-07 42.9 1.2 18 1-18 30-47 (200)
486 2b6h_A ADP-ribosylation factor 94.8 0.008 2.7E-07 42.8 1.0 18 1-18 34-51 (192)
487 2q3h_A RAS homolog gene family 94.7 0.01 3.5E-07 42.3 1.6 18 1-18 25-42 (201)
488 2fv8_A H6, RHO-related GTP-bin 94.7 0.0098 3.3E-07 42.8 1.4 19 1-19 30-48 (207)
489 2fu5_C RAS-related protein RAB 94.7 0.0057 1.9E-07 42.9 0.1 18 1-18 13-30 (183)
490 2f7s_A C25KG, RAS-related prot 94.7 0.011 3.8E-07 42.7 1.6 18 1-18 30-47 (217)
491 3b1v_A Ferrous iron uptake tra 94.7 0.011 3.7E-07 44.9 1.6 19 1-19 8-26 (272)
492 2gno_A DNA polymerase III, gam 94.7 0.0091 3.1E-07 46.1 1.2 19 1-19 23-41 (305)
493 2dby_A GTP-binding protein; GD 94.7 0.012 4E-07 46.7 1.8 19 1-19 6-24 (368)
494 2h17_A ADP-ribosylation factor 94.7 0.0078 2.7E-07 42.3 0.7 19 1-19 26-44 (181)
495 2xtp_A GTPase IMAP family memb 94.6 0.0095 3.3E-07 44.6 1.2 19 1-19 27-45 (260)
496 2gco_A H9, RHO-related GTP-bin 94.6 0.01 3.5E-07 42.4 1.3 19 1-19 30-48 (201)
497 2gk6_A Regulator of nonsense t 94.6 0.01 3.5E-07 50.4 1.5 19 1-19 200-218 (624)
498 4gzl_A RAS-related C3 botulinu 94.6 0.01 3.6E-07 42.6 1.3 19 1-19 35-53 (204)
499 3llu_A RAS-related GTP-binding 94.6 0.0083 2.8E-07 42.8 0.8 20 1-20 25-44 (196)
500 2j1l_A RHO-related GTP-binding 94.6 0.01 3.5E-07 43.0 1.2 18 1-18 39-56 (214)
No 1
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.93 E-value=2e-25 Score=164.80 Aligned_cols=187 Identities=21% Similarity=0.206 Sum_probs=135.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|.|||||||||+|+.|+++||+++||++++.+.... ..++.+.... .....+.+ +..+.+...+.+.+.+
T Consensus 5 l~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~------~~t~lg~~~~--~~~~~G~l--vpd~iv~~lv~~~l~~ 74 (206)
T 3sr0_A 5 FLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQ------KGTPLGKKAK--EYMERGEL--VPDDLIIALIEEVFPK 74 (206)
T ss_dssp EECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH------HTCHHHHHHH--HHHHHTCC--CCHHHHHHHHHHHCCS
T ss_pred EECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHH------hcChhhhhHH--HHHhcCCc--CCHHHHHHHHHHhhcc
Confidence 469999999999999999999999999999665221 1122111000 11112222 4556677788888888
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeE-EEEEecCCCHHHHHHHHHhcCCCCCCCccCC---CCCCC-----CCCCC
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGL-VIVECKPSDEAEWRRRLEGRGNEGGCGVVGD---DRPSS-----WHKPS 151 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~-~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~---~~~~~-----~~~~~ 151 (203)
..+||+||.+....+.+.|..+....+.++ .+|+|.++ ++++.+|+..|..++.||..|+ +|+.. .+.++
T Consensus 75 ~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~-~e~l~~Rl~~R~~~~~~g~~y~~~~~pp~~g~~l~~r~DD 153 (206)
T 3sr0_A 75 HGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVP-DEVVIERLSGRRINPETGEVYHVKYNPPPPGVKVIQREDD 153 (206)
T ss_dssp SSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECC-HHHHHHHHHTEEECTTTCCEEETTTBCCCTTCCCBCCGGG
T ss_pred CCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCC-HHHHHHHHhCCccccCCCceeeeeccCCCCCceecccCCC
Confidence 888999997776667677766666666543 57778875 4689999999999999998777 22221 34578
Q ss_pred CHHHHHHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 152 TWRDLERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 152 ~~e~~~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+.+.+|++.|.... +||........||++. ++++|+++|.+.|..
T Consensus 154 ~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~--~~~eV~~~I~~~l~e 204 (206)
T 3sr0_A 154 KPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASK--PVEEVYRQVLEVIGD 204 (206)
T ss_dssp SHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTS--CHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCC--CHHHHHHHHHHHHcc
Confidence 8999999999986543 3566655678999999 999999999998864
No 2
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.90 E-value=1.9e-23 Score=155.00 Aligned_cols=176 Identities=14% Similarity=0.180 Sum_probs=113.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhh--hhhhHHHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLL--NDLSYDVIWKIASTQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~l 78 (203)
|.|||||||||+|+.|+++||+++|+++++.+.... ..++.+.... .....+.+ ++.....+.+.+.+..
T Consensus 34 llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~------~~t~lg~~~~--~~~~~G~lVpde~~~~lv~~~l~~~~ 105 (217)
T 3umf_A 34 VLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQ------SGSPKGKELK--AMMERGELVPLEVVLALLKEAMIKLV 105 (217)
T ss_dssp EECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHT------TCCHHHHHHH--HHHHHTCCCCHHHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHH------cCCchHHHHH--HHHhcCCCCCHHHHHHHHHHHHhhcc
Confidence 469999999999999999999999999999665221 1122111100 01111111 1222333333333333
Q ss_pred hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHH
Q 039424 79 KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLER 158 (203)
Q Consensus 79 ~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 158 (203)
....++|+||.+....+...|... ...+..+|++.+++ +++.+|+..|.... .+.+++.+.+.+
T Consensus 106 ~~~~g~ilDGfPRt~~Qa~~l~~~---~~~~~~vi~l~v~~-e~~~~Rl~~R~~~~------------~R~DD~~e~i~~ 169 (217)
T 3umf_A 106 DKNCHFLIDGYPRELDQGIKFEKE---VCPCLCVINFDVSE-EVMRKRLLKRAETS------------NRVDDNEETIVK 169 (217)
T ss_dssp TTCSEEEEETBCSSHHHHHHHHHH---TCCCSEEEEEECCH-HHHHHHHSCC------------------CHHHHHHHHH
T ss_pred ccccCcccccCCCcHHHHHHHHHh---CCccCEEEeccCCH-HHHHHHHhcccccC------------CCCCCCHHHHHH
Confidence 446679999965554444444332 23445678888765 68999999986432 234567889999
Q ss_pred HhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhccC
Q 039424 159 LLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILHID 202 (203)
Q Consensus 159 ~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~~ 202 (203)
|++.|.... +||......+.||++. ++++|+++|.+.|+++-
T Consensus 170 Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~--~~eeV~~~I~~~l~k~G 215 (217)
T 3umf_A 170 RFRTFNELTKPVIEHYKQQNKVITIDASG--TVDAIFDKVNHELQKFG 215 (217)
T ss_dssp HHHHHHHHTHHHHHHHHTTTCEEEEETTS--CHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCEEEEECCC--CHHHHHHHHHHHHHHcC
Confidence 999886543 3666556778999999 99999999999998753
No 3
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.90 E-value=1.1e-22 Score=151.39 Aligned_cols=189 Identities=19% Similarity=0.218 Sum_probs=125.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhh-
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLK- 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~- 79 (203)
|+|+|||||||+|+.|++++|++++++|++.+...... .+.+.... .......+ .....+...+...+.
T Consensus 5 l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~------~~~~~~~~--~~~~~g~~--~~~~~~~~~~~~~l~~ 74 (216)
T 3dl0_A 5 LMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEE------TPLGLEAK--SYIDKGEL--VPDEVTIGIVKERLGK 74 (216)
T ss_dssp EECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTT------CHHHHHHH--HHHTTTCC--CCHHHHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcC------CHHHHHHH--HHHHCCCC--CCHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999876533110 11000000 00000000 122333344444443
Q ss_pred --CCCcEEEeCCCCchHhHHHHHHHHHhhCCeE-EEEEecCCCHHHHHHHHHhcCCCCCCCccCC----CCCCC------
Q 039424 80 --LGVSVVVDSPLSRRAHLEKLVKLAGEMRAGL-VIVECKPSDEAEWRRRLEGRGNEGGCGVVGD----DRPSS------ 146 (203)
Q Consensus 80 --~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~-~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~----~~~~~------ 146 (203)
.+.++|+|+......+...+.......+..+ .+|+|.+++ +++.+|+..|..++.||..|| +|...
T Consensus 75 ~~~~~~~ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~-e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~ 153 (216)
T 3dl0_A 75 DDCERGFLLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDK-DVLMERLTGRRICSVCGTTYHLVFNPPKTPGICDKD 153 (216)
T ss_dssp GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCG-GGHHHHHHTEEEETTTCCEEETTTBCCSSTTBCTTT
T ss_pred ccccCCEEEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCH-HHHHHHHHCCCcCCccCCccccccCCCcccCccccc
Confidence 3778999996666566666666555455443 678888876 589999999999999997777 33221
Q ss_pred -----CCCCCCHHHHHHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhccC
Q 039424 147 -----WHKPSTWRDLERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILHID 202 (203)
Q Consensus 147 -----~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~~ 202 (203)
.+.+++.+.+.+|++.|.... +++......++||+++ +++++.++|.+.+..++
T Consensus 154 ~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~v~~~i~~~l~~~~ 216 (216)
T 3dl0_A 154 GGELYQRADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQ--DIQDVYADLKVLLGGLK 216 (216)
T ss_dssp CCBEECCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSS--CHHHHHHHHHHHHGGGC
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCC--CHHHHHHHHHHHHHhcC
Confidence 124678889999998765332 2333333568999999 99999999999998653
No 4
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.89 E-value=1.8e-22 Score=150.28 Aligned_cols=188 Identities=18% Similarity=0.203 Sum_probs=124.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|++++|++++++|++.+...... .+.+.... .......+ .....+...+...+..
T Consensus 5 l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~------~~~~~~~~--~~~~~g~~--~~~~~~~~~~~~~l~~ 74 (216)
T 3fb4_A 5 LMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNG------TELGLKAK--SFMDQGNL--VPDEVTIGIVHERLSK 74 (216)
T ss_dssp EECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTT------CHHHHHHH--HHHHHTCC--CCHHHHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcC------CHHHHHHH--HHHHCCCC--CCHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999976633110 11000000 00001111 1223333444444433
Q ss_pred ---CCcEEEeCCCCchHhHHHHHHHHHhhCCeE-EEEEecCCCHHHHHHHHHhcCCCCCCCccCC----CCCCCC-----
Q 039424 81 ---GVSVVVDSPLSRRAHLEKLVKLAGEMRAGL-VIVECKPSDEAEWRRRLEGRGNEGGCGVVGD----DRPSSW----- 147 (203)
Q Consensus 81 ---~~~vIid~~~~~~~~~~~~~~~~~~~~~~~-~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~----~~~~~~----- 147 (203)
+.++|+|+......+...+.......+.++ .+|+|.+++ +++.+|+..|..++.||..|| +|...+
T Consensus 75 ~~~~~~~ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~-e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~ 153 (216)
T 3fb4_A 75 DDCQKGFLLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQ-EELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKD 153 (216)
T ss_dssp GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCH-HHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTT
T ss_pred ccCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHHHcCCCCCccCCccccccCCCCcccccccc
Confidence 678999997666566666666555555443 678888765 689999999998999997776 332211
Q ss_pred ------CCCCCHHHHHHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 148 ------HKPSTWRDLERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 148 ------~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+++.+.+.+|++.|.... +++......++||+++ +++++.++|.+.+..+
T Consensus 154 ~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~v~~~i~~~l~~~ 215 (216)
T 3fb4_A 154 GGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQ--DIKKVFVDINDLLGGL 215 (216)
T ss_dssp CCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSS--CHHHHHHHHHHHHHTC
T ss_pred cCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCC--CHHHHHHHHHHHHHhc
Confidence 23567788888888765432 2333333578999999 9999999999998765
No 5
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.89 E-value=1e-23 Score=156.97 Aligned_cols=184 Identities=18% Similarity=0.160 Sum_probs=107.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|.|+|||||||+|+.|+++||+++|+++++.+.... ..++.+.... ..+..+. ....+.+...+.+.+.+
T Consensus 13 ~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~------~~t~lG~~i~--~~~~~G~--lvpdei~~~ll~~~l~~ 82 (230)
T 3gmt_A 13 LLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVK------AGTPLGVEAK--TYMDEGK--LVPDSLIIGLVKERLKE 82 (230)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHH------TTCHHHHHHH--HHHTTTC--CCCHHHHHHHHHHHHHS
T ss_pred eECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhcc------CCChHHHHHH--HHHhhcc--ccccHHHHHHHHHHHhC
Confidence 579999999999999999999999999998665321 0111111000 0000111 12334444555555543
Q ss_pred ---CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCC----CCCCCC------
Q 039424 81 ---GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGD----DRPSSW------ 147 (203)
Q Consensus 81 ---~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~----~~~~~~------ 147 (203)
..+||+||.+....+.+.|. .....+..+|+|.+++ +++.+|+..|..++.||..|| +|...+
T Consensus 83 ~~~~~g~ILDGfPRt~~Qa~~L~---~~~~~~d~VI~Ldvp~-e~l~~Rl~~R~~~~~~G~~Yh~~~~pp~~~~~~d~~g 158 (230)
T 3gmt_A 83 ADCANGYLFDGFPRTIAQADAMK---EAGVAIDYVLEIDVPF-SEIIERMSGRRTHPASGRTYHVKFNPPKVEGKDDVTG 158 (230)
T ss_dssp GGGTTCEEEESCCCSHHHHHHHH---HTTCCCSEEEEECCCH-HHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTC
T ss_pred cccCCCeEecCCCCcHHHHHHHH---HhCCCccEEEEEeCCH-HHHHHHHHcCCcccccCCcccccCCCCCccCcCCCcc
Confidence 45799999655444434332 2122344688898765 589999999999999997776 333322
Q ss_pred -----CCCCCHHHHHHHhhhhcCCC----CCCCC-----------CCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 148 -----HKPSTWRDLERLLEGYCGCT----EYDVG-----------DVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 148 -----~~~~~~e~~~~~~~~~~~~~----~~~~~-----------~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+++.+.+.+|++.|.... +||.. ......||++. ++++|.++|.+.+.+
T Consensus 159 ~~L~~R~DD~~e~i~~Rl~~y~~~t~pl~~~Y~~~~~~~~~~~~~~~~l~~idg~~--~~~eV~~~i~~~l~~ 229 (230)
T 3gmt_A 159 EPLVQRDDDKEETVKKRLDVYEAQTKPLITYYGDWARRGAENGLKAPAYRKISGLG--AVEEIRARVRRAQVS 229 (230)
T ss_dssp CBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCCCEEEEECC-------------------
T ss_pred CccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccCCeEEEEECCC--CHHHHHHHHHHHHhc
Confidence 55788999999999986543 35543 14568899999 999999999988754
No 6
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.87 E-value=1.4e-21 Score=148.10 Aligned_cols=186 Identities=16% Similarity=0.125 Sum_probs=123.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|++++|++++++|++.+.... .+.+.+... ...+....+ .....+...+...+..
T Consensus 34 l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~------~~~~~g~~i--~~~~~~g~~--~~~~~~~~~~~~~l~~ 103 (243)
T 3tlx_A 34 FLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAE------KKTELGLKI--KNIINEGKL--VDDQMVLSLVDEKLKT 103 (243)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTT------SSSHHHHHH--HHHHHTTCC--CCHHHHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHh------ccchHHHHH--HHHHhcCCC--CcHHHHHHHHHHHHhc
Confidence 579999999999999999999999999998665321 001110000 000001111 2233344455555544
Q ss_pred ---CCcEEEeCCCCchHhHHHHHHHHHhhCC-eEEEEEecCCCHHHHHHHHHhcCCCCCCCccCC----CCCCC------
Q 039424 81 ---GVSVVVDSPLSRRAHLEKLVKLAGEMRA-GLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGD----DRPSS------ 146 (203)
Q Consensus 81 ---~~~vIid~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~----~~~~~------ 146 (203)
+.++|+|+......+...+..+....+. +..+|+|.+++ +++.+|+..|..++.||..|| +|...
T Consensus 104 ~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~-e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~ 182 (243)
T 3tlx_A 104 PQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPD-EVLVNRISGRLIHKPSGRIYHKIFNPPKVPFRDDVT 182 (243)
T ss_dssp GGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCH-HHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTT
T ss_pred ccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCH-HHHHHHHHcCCCCcccCcccccccCCCcccCccccc
Confidence 6789999965555555555555544443 34678888765 699999999999999998776 33221
Q ss_pred -----CCCCCCHHHHHHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 147 -----WHKPSTWRDLERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 147 -----~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
.+.+++.+.+.+|++.|.... +||......+.||++. ++++++++|.+.+.
T Consensus 183 ~~~l~~r~dd~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~--~~~~v~~~i~~~l~ 242 (243)
T 3tlx_A 183 NEPLIQREDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQ--PANDLEKKISQHID 242 (243)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTS--CHHHHHHHHHHHHH
T ss_pred cccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCC--CHHHHHHHHHHHHc
Confidence 123578899999999875443 2444444678899999 99999999998875
No 7
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.87 E-value=4.2e-21 Score=143.08 Aligned_cols=185 Identities=15% Similarity=0.167 Sum_probs=114.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhh-
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLK- 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~- 79 (203)
|+|+|||||||+|+.|++.+|++++++|++.+...+ ..++.+.... .....+.. ...+...+.+...+.
T Consensus 10 l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~------~~t~~g~~i~--~~~~~g~~--~~~~~~~~~i~~~l~~ 79 (217)
T 3be4_A 10 LIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIK------NGTKIGLEAK--SIIESGNF--VGDEIVLGLVKEKFDL 79 (217)
T ss_dssp EEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH------TC--CCHHHH--HHHHHTCC--CCHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHH------cCCHHHHHHH--HHHHCCCc--CCHHHHHHHHHHHHhc
Confidence 579999999999999999999999999998765321 1112211000 00001110 112223333333333
Q ss_pred --CCCcEEEeCCCCchHhHHHHHHHHHhhC-CeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCC----CCCCCC-----
Q 039424 80 --LGVSVVVDSPLSRRAHLEKLVKLAGEMR-AGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGD----DRPSSW----- 147 (203)
Q Consensus 80 --~~~~vIid~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~----~~~~~~----- 147 (203)
.+.+||+|+......+.+.+..+....+ .+..+|+|++++ +++.+|+..|..++.||..|| +|...+
T Consensus 80 ~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~-e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~ 158 (217)
T 3be4_A 80 GVCVNGFVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDD-SEIIERISGRCTHPASGRIYHVKYNPPKQPGIDDVT 158 (217)
T ss_dssp TTTTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCH-HHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCTTT
T ss_pred cccCCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHHHcCCCCccccCccccccCCCCcccccccc
Confidence 3778999985444344455444443344 455789999866 589999999987777886665 332211
Q ss_pred ------CCCCCHHHHHHHhhhhcCCCC----CCCCCCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 148 ------HKPSTWRDLERLLEGYCGCTE----YDVGDVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 148 ------~~~~~~e~~~~~~~~~~~~~~----~~~~~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
..++..+.+.+++..|..... +|......++||++. ++++++++|.+.+
T Consensus 159 ~~~l~~~~dd~~e~v~~r~~~~~~~~~~l~~~y~~~~~~~~id~~~--~~~~v~~~i~~~l 217 (217)
T 3be4_A 159 GEPLVWRDDDNAEAVKVRLDVFHKQTAPLVKFYEDLGILKRVNAKL--PPKEVTEQIKKIL 217 (217)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTS--CHHHHHHHHHHHC
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCC--CHHHHHHHHHhhC
Confidence 123566777777776643322 343334568899988 9999999998754
No 8
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.86 E-value=7.9e-21 Score=141.83 Aligned_cols=186 Identities=18% Similarity=0.171 Sum_probs=114.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHH-hhhhhhhhHHHHHHHHHHHh-
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAA-SSLLNDLSYDVIWKIASTQL- 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l- 78 (203)
|+|+|||||||+|+.|++.++++++++|++.+...+.. ++.+... .... .+.. .....+...+...+
T Consensus 9 l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~------~~~g~~i---~~~~~~g~~--~~~~~~~~~l~~~l~ 77 (220)
T 1aky_A 9 LIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKG------TQLGLEA---KKIMDQGGL--VSDDIMVNMIKDELT 77 (220)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTT------CHHHHHH---HHHHHTTCC--CCHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcC------ChHHHHH---HHHHHCCCc--CCHHHHHHHHHHHHH
Confidence 57999999999999999999999999999866532100 1100000 0000 0000 11122222333333
Q ss_pred ---hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeE-EEEEecCCCHHHHHHHHHhcCCCCCCCccCC----CCCCC----
Q 039424 79 ---KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGL-VIVECKPSDEAEWRRRLEGRGNEGGCGVVGD----DRPSS---- 146 (203)
Q Consensus 79 ---~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~-~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~----~~~~~---- 146 (203)
..+.+||+|+......+...+..+....+..+ .+|+|++++ +++.+|+..|..++.||..|+ +|...
T Consensus 78 ~~~~~~~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~-e~~~~R~~~r~~~~~~g~~y~~~~~pp~~~~~d~ 156 (220)
T 1aky_A 78 NNPACKNGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDD-ELLVARITGRLIHPASGRSYHKIFNPPKEDMKDD 156 (220)
T ss_dssp HCGGGGSCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCH-HHHHHHHHTEEECTTTCCEEETTTBCCSSTTBCT
T ss_pred hccccCCCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHHhCCCccCccCCccccccCCCccccccc
Confidence 24667999984444444455554444445433 688998766 589999999987777886655 33211
Q ss_pred -------CCCCCCHHHHHHHhhhhcCCCC----CCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 147 -------WHKPSTWRDLERLLEGYCGCTE----YDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 147 -------~~~~~~~e~~~~~~~~~~~~~~----~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+.+++.+.+.++++.|..... +|......++||++. ++++++++|.+.+..
T Consensus 157 ~~~~~l~~r~dd~~~~~~~rl~~~~~~~~~l~~~y~~~~~~~~id~~~--~~~~v~~~i~~~l~~ 219 (220)
T 1aky_A 157 VTGEALVQRSDDNADALKKRLAAYHAQTEPIVDFYKKTGIWAGVDASQ--PPATVWADILNKLGK 219 (220)
T ss_dssp TTCCBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHTCEEEEETTS--CHHHHHHHHHHHHTC
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCC--CHHHHHHHHHHHHhc
Confidence 1234567778888777654322 333223568899988 999999999998864
No 9
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.86 E-value=6.2e-21 Score=142.76 Aligned_cols=184 Identities=12% Similarity=0.101 Sum_probs=114.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHH-hhhhhhhhHHHHHHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAA-SSLLNDLSYDVIWKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~ 79 (203)
|+|+|||||||+|+.|++.+|++++++|++.+..... +++.+... .... .+.+ ...+.+...+...+.
T Consensus 5 l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~------~~~~g~~i---~~~~~~g~~--~~~~~~~~~i~~~l~ 73 (223)
T 2xb4_A 5 IFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGG------GTELGKKA---KEFIDRGDL--VPDDITIPMVLETLE 73 (223)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTT------TCHHHHHH---HHHHTTTCC--CCHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHc------CCHHHHHH---HHHHHcCCc--CcHHHHHHHHHHHHh
Confidence 5799999999999999999999999999986653110 00100000 0000 0011 112334445555555
Q ss_pred C--CCcEEEeCCCCchHhHHHHHHHHHhhC-CeEEEEEecCCCHHHHHHHHHhcCCCCC-CCccCC----CCCCCC----
Q 039424 80 L--GVSVVVDSPLSRRAHLEKLVKLAGEMR-AGLVIVECKPSDEAEWRRRLEGRGNEGG-CGVVGD----DRPSSW---- 147 (203)
Q Consensus 80 ~--~~~vIid~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~~~~~e~~~~R~~~R~~~~~-~~~~~~----~~~~~~---- 147 (203)
. +.+||+|+......+...+..++...+ .+..+|+|.+++ +++.+|+..|+.++. ||..|| +|...+
T Consensus 74 ~~~g~~vIlDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~-e~~~~Rl~~R~~~~~~~g~~y~~~~~~p~~~~~~~~ 152 (223)
T 2xb4_A 74 SKGKDGWLLDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPR-EVAKNRIMGRRICKNNPNHPNNIFIDAIKPNGDVCR 152 (223)
T ss_dssp HHCTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCH-HHHHHHHHTBCEESSCTTSCCBTTCGGGCCBTTBCT
T ss_pred cccCCeEEEeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHHHcccCCccccCCccccccCCCcccccccc
Confidence 5 888999985444345555544433334 345688888766 589999999976555 776666 222111
Q ss_pred --------CCCCCHH-HHHHHhhhhcCC----CC---CCCC-----CCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 148 --------HKPSTWR-DLERLLEGYCGC----TE---YDVG-----DVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 148 --------~~~~~~e-~~~~~~~~~~~~----~~---~~~~-----~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
..+++.+ .+.+|+..|... .+ +|.. ....++||++. ++++++++|.+.+
T Consensus 153 ~~~~~l~~r~dd~~e~~i~~rl~~~~~~~~p~~~~~~~y~~~a~~~~~~~~~ida~~--~~~~v~~~i~~~l 222 (223)
T 2xb4_A 153 VCGGALSARADDQDEGAINKRHDIYYNTVDGTLAAAYYYKNMAAKEGFVYIELDGEG--SIDSIKDTLLAQL 222 (223)
T ss_dssp TTCCBEECCGGGGCHHHHHHHHHHHTCTTTSHHHHHHHHHTTHHHHTCEEEEEETTS--CHHHHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHHhHHHHHhhHHHHhhhhhccCCeEEEEECCC--CHHHHHHHHHHHh
Confidence 1123456 788888766543 22 3332 23468999988 9999999999876
No 10
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.85 E-value=8e-20 Score=139.74 Aligned_cols=159 Identities=23% Similarity=0.284 Sum_probs=113.0
Q ss_pred CCCCCCCChHHHHHHHHHh---CCCcee--chhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASA---LKIPLI--DKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~---~~~~~i--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|+|||||||+|+.|++. +|+.++ +.|.+++.+.+ +. ..... .........+.
T Consensus 9 l~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~-----------~~------~~~e~----~~~~~~~~~i~ 67 (260)
T 3a4m_A 9 LTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV-----------WK------EKYEE----FIKKSTYRLID 67 (260)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS-----------CC------GGGHH----HHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh-----------hh------HHHHH----HHHHHHHHHHH
Confidence 5899999999999999987 788887 88988754321 00 00000 11122233444
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHH
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (203)
..+.. ..||+|+.+....++..+..++...+.+..+|+|.+++ +++.+|+..|+.. ...+.
T Consensus 68 ~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~-e~~~~R~~~R~~~-----------------~~~~~ 128 (260)
T 3a4m_A 68 SALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASL-DVLIRRNIERGEK-----------------IPNEV 128 (260)
T ss_dssp HHHTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCH-HHHHHHHHHTTCS-----------------SCHHH
T ss_pred HHhhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCH-HHHHHHHHhCCCC-----------------CCHHH
Confidence 55555 78999998877788888888888888899999999866 5899999988632 24466
Q ss_pred HHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 156 LERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
+.+..+.|......+.|....++||++...++++++..|.+.+.
T Consensus 129 l~~~~~~~e~~~~~~~~~~~~~~Id~~~~~~~~ei~~~I~~~l~ 172 (260)
T 3a4m_A 129 IKKMYEKFDEPGKKYKWDEPFLIIDTTKDIDFNEIAKKLIEKSK 172 (260)
T ss_dssp HHHHHHHCCCTTSSCGGGCCSEEEETTSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCccccCCCCCCEEEEeCCCCCCHHHHHHHHHhccc
Confidence 66666666544444444446799999973489999999998775
No 11
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.84 E-value=7.3e-20 Score=134.81 Aligned_cols=158 Identities=23% Similarity=0.249 Sum_probs=106.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+++.|++.+|+.+++.|.+....... .+..+... ...........+...+..
T Consensus 23 l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~--~~~~g~~~---------------~~~~~~~~~~~l~~~~~~ 85 (202)
T 3t61_A 23 VMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIR--KMSEGIPL---------------TDDDRWPWLAAIGERLAS 85 (202)
T ss_dssp EECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHH--HHHHTCCC---------------CHHHHHHHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHH--HHhcCCCC---------------CchhhHHHHHHHHHHHhc
Confidence 5899999999999999999999999999985331100 00000110 000011112233344467
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHh
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLL 160 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 160 (203)
+..+|+|+++....+++.+.... +.++.+|+|.+++ +++.+|+..|.... ...+.+.+.+
T Consensus 86 ~~~vivd~~~~~~~~~~~l~~~~---~~~~~vi~l~~~~-e~~~~Rl~~R~~~~----------------~~~~~~~~~~ 145 (202)
T 3t61_A 86 REPVVVSCSALKRSYRDKLRESA---PGGLAFVFLHGSE-SVLAERMHHRTGHF----------------MPSSLLQTQL 145 (202)
T ss_dssp SSCCEEECCCCSHHHHHHHHHTS---TTCCEEEEEECCH-HHHHHHHHHHHSSC----------------CCHHHHHHHH
T ss_pred CCCEEEECCCCCHHHHHHHHHhc---CCCeEEEEEeCCH-HHHHHHHHHhhccC----------------CCHHHHHHHH
Confidence 88899999888777777655443 4556889999865 58999999997653 2356666666
Q ss_pred hhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 161 EGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+.++ + .....++||++. ++++++++|.+.+...
T Consensus 146 ~~~~~~--~--~~~~~~~Id~~~--~~~e~~~~I~~~l~~~ 180 (202)
T 3t61_A 146 ETLEDP--R--GEVRTVAVDVAQ--PLAEIVREALAGLARL 180 (202)
T ss_dssp HHCCCC--T--TSTTEEEEESSS--CHHHHHHHHHHHHHHH
T ss_pred HhcCCC--C--CCCCeEEEeCCC--CHHHHHHHHHHHHHHh
Confidence 655433 2 123679999998 9999999999998753
No 12
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.84 E-value=2.4e-20 Score=136.08 Aligned_cols=177 Identities=10% Similarity=0.098 Sum_probs=106.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhh--hhhhHHHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLL--NDLSYDVIWKIASTQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~l 78 (203)
|+|+|||||||+|+.|++.+|++++++|++.+.... .+.+.+.... .....+.+ .......+...+..
T Consensus 11 l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~------~~~~~~~~i~--~~~~~g~~~~~~~~~~~l~~~i~~-- 80 (194)
T 1qf9_A 11 VLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQ------SGSKDGEMIA--TMIKNGEIVPSIVTVKLLKNAIDA-- 80 (194)
T ss_dssp EEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH------TTCTTHHHHH--HHHHTTCCCCHHHHHHHHHHHHHT--
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHh------cCCHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHHh--
Confidence 579999999999999999999999999988654321 0011110000 00000000 11122222222222
Q ss_pred hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHH
Q 039424 79 KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLER 158 (203)
Q Consensus 79 ~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 158 (203)
..+..+|+|+.......+..+.........+..+|+|.+++ +++.+|+..|.... ...++..+.+.+
T Consensus 81 ~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~-e~~~~R~~~R~~~~------------~r~~~~~~~~~~ 147 (194)
T 1qf9_A 81 NQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPE-EVMTQRLLKRGESS------------GRSDDNIESIKK 147 (194)
T ss_dssp STTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCH-HHHHHHHHHHHTTS------------CCTTCSHHHHHH
T ss_pred cCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCH-HHHHHHHHhccccC------------CCCCCCHHHHHH
Confidence 15678999996655555555544443222344688888765 58999999886421 012345777777
Q ss_pred Hhhhhc----CCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhccC
Q 039424 159 LLEGYC----GCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHID 202 (203)
Q Consensus 159 ~~~~~~----~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~~ 202 (203)
+++.+. +...++......++||++. +++++.++|.+.+....
T Consensus 148 ri~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~i~~~l~~~~ 193 (194)
T 1qf9_A 148 RFNTFNVQTKLVIDHYNKFDKVKIIPANR--DVNEVYNDVENLFKSMG 193 (194)
T ss_dssp HHHHHHHTHHHHHHHHHHTTCEEEEECSS--CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhHHHHHHHHHhCCCEEEEECCC--CHHHHHHHHHHHHHHcc
Confidence 776553 1111222233458899998 99999999999987654
No 13
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.84 E-value=4.5e-20 Score=132.53 Aligned_cols=168 Identities=18% Similarity=0.184 Sum_probs=105.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh--
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL-- 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l-- 78 (203)
|+|+|||||||+|+.| +.+|+++++.|++.+....... ..... ................+.+.+...+
T Consensus 6 l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ 75 (179)
T 3lw7_A 6 ITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEA------KPGER---LMDFAKRLREIYGDGVVARLCVEELGT 75 (179)
T ss_dssp EECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---------CC---HHHHHHHHHHHHCTTHHHHHHHHHHCS
T ss_pred EECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcC------CChhH---HHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 5799999999999999 8999999999988765432110 00000 0011111111111223444555555
Q ss_pred hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHH
Q 039424 79 KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLER 158 (203)
Q Consensus 79 ~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 158 (203)
..+..||+|+. .....++.+.+.. +.++.+|+|.+++ +++.+|+..|++.. ...+.+.+.+
T Consensus 76 ~~~~~vi~dg~-~~~~~~~~l~~~~---~~~~~~i~l~~~~-~~~~~R~~~R~~~~--------------~~~~~~~~~~ 136 (179)
T 3lw7_A 76 SNHDLVVFDGV-RSLAEVEEFKRLL---GDSVYIVAVHSPP-KIRYKRMIERLRSD--------------DSKEISELIR 136 (179)
T ss_dssp CCCSCEEEECC-CCHHHHHHHHHHH---CSCEEEEEEECCH-HHHHHHHHTCC------------------CCCHHHHHH
T ss_pred cCCCeEEEeCC-CCHHHHHHHHHHh---CCCcEEEEEECCH-HHHHHHHHhccCCC--------------CcchHHHHHH
Confidence 56778999997 5556666655544 4677899999866 58999999986531 1246677777
Q ss_pred Hhhh--hcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 159 LLEG--YCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 159 ~~~~--~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
++.. +.+...+... .+++||+++ +++++.++|.+.+..+
T Consensus 137 r~~~~~~~~~~~~~~~--ad~vId~~~--~~~~~~~~i~~~l~~~ 177 (179)
T 3lw7_A 137 RDREELKLGIGEVIAM--ADYIITNDS--NYEEFKRRCEEVTDRV 177 (179)
T ss_dssp HHHHHHHHTHHHHHHT--CSEEEECCS--CHHHHHHHHHHHHHHH
T ss_pred HHHhhhccChHhHHHh--CCEEEECCC--CHHHHHHHHHHHHHHH
Confidence 6533 2111222222 458999999 9999999999988753
No 14
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.83 E-value=6.3e-20 Score=134.05 Aligned_cols=177 Identities=11% Similarity=0.101 Sum_probs=104.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHH-hhhh--hhhhHHHHHHHHHH-
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAA-SSLL--NDLSYDVIWKIAST- 76 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~l~~~~~~- 76 (203)
|+|+|||||||+|+.|++.+|+++++.|++.+...... ..+.+... .... .+.. .+.....+...+..
T Consensus 8 l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~-----~~~~~~~~---~~~~~~g~~~~~~~~~~~l~~~~~~~ 79 (196)
T 1tev_A 8 VLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNP-----DSQYGELI---EKYIKEGKIVPVEITISLLKREMDQT 79 (196)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCT-----TSTTHHHH---HHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhcc-----CChHHHHH---HHHHHCCCcCCHHHHHHHHHHHHHhh
Confidence 57999999999999999999999999999966532100 00100000 0000 0000 01112222222222
Q ss_pred --HhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHH
Q 039424 77 --QLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWR 154 (203)
Q Consensus 77 --~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e 154 (203)
.+..+..||+|+.+.....+..+.........+..+|+|.+++ +++.+|+..|.... .+.++..+
T Consensus 80 ~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~-e~~~~R~~~R~~~~------------~r~~~~~~ 146 (196)
T 1tev_A 80 MAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNN-EICIERCLERGKSS------------GRSDDNRE 146 (196)
T ss_dssp HHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCH-HHHHHHHHHHHHTS------------SCCSCCHH
T ss_pred hccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCH-HHHHHHHHcccccC------------CCCCCCHH
Confidence 2335778999997666555555544433222344688888765 58999999885321 01224566
Q ss_pred HHHHHhhhhcCCCC----CCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 155 DLERLLEGYCGCTE----YDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 155 ~~~~~~~~~~~~~~----~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+.+++..|..... ++......++||++. ++++++++|.+.+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~id~~~--~~~~v~~~i~~~l~~ 194 (196)
T 1tev_A 147 SLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASK--SVDEVFDEVVQIFDK 194 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcCCEEEEECCC--CHHHHHHHHHHHHHh
Confidence 67766666543322 222222446999998 999999999998864
No 15
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.83 E-value=1.2e-19 Score=132.38 Aligned_cols=118 Identities=25% Similarity=0.367 Sum_probs=80.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+++.|++.+|+++++.|.+++.+.+. + ... ...+...+....+..+...+...+..
T Consensus 10 l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~---~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~ 76 (193)
T 2rhm_A 10 VTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDG---L---GWS-------DREWSRRVGATAIMMLYHTAATILQS 76 (193)
T ss_dssp EEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHH---H---CCC-------SHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHh---c---Ccc-------chHHHHHhhHHHHHHHHHHHHHHHhC
Confidence 5799999999999999999999999999997765431 0 000 01111112223345555566667788
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCC
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGN 132 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~ 132 (203)
|.+||+|+.+.....+..+..+....+.++.+|+|.+++ +++.+|+..|..
T Consensus 77 g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~-e~~~~R~~~R~~ 127 (193)
T 2rhm_A 77 GQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASG-DVLVERILSRIA 127 (193)
T ss_dssp TCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCH-HHHHHHHHHHHH
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCH-HHHHHHHHHhcC
Confidence 889999997733223344444555556788899999865 589999988864
No 16
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.83 E-value=8.8e-20 Score=137.34 Aligned_cols=186 Identities=17% Similarity=0.176 Sum_probs=115.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHH-hhhhhhhhHHHHHHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAA-SSLLNDLSYDVIWKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~ 79 (203)
|+|+|||||||+|+.|++++++.++++|++.+...... ++.+... .... ...+ ...+.+...+...+.
T Consensus 21 l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~------~~~g~~i---~~~~~~g~~--~~~~~~~~~i~~~l~ 89 (233)
T 1ak2_A 21 LLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASG------SELGKKL---KATMDAGKL--VSDEMVLELIEKNLE 89 (233)
T ss_dssp EECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHT------CHHHHHH---HHHHHTTCC--CCHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcC------ChhHHHH---HHHHHCCCc--CCHHHHHHHHHHHHh
Confidence 57999999999999999999999999999866532110 0000000 0000 0000 122233334444443
Q ss_pred ---CCCcEEEeCCCCchHhHHHHHHHHHhhC-CeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCC----CCCCCC----
Q 039424 80 ---LGVSVVVDSPLSRRAHLEKLVKLAGEMR-AGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGD----DRPSSW---- 147 (203)
Q Consensus 80 ---~~~~vIid~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~----~~~~~~---- 147 (203)
.+.+||+|+......+.+.+.++....+ .+..+|+|++++ +++.+|+..|..++.||..|+ +|...+
T Consensus 90 ~~~~~~g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~-e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~ 168 (233)
T 1ak2_A 90 TPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPD-SLLIRRITGRLIHPQSGRSYHEEFNPPKEPMKDDI 168 (233)
T ss_dssp SGGGTTCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCH-HHHHHHHHTCEECTTTCCEEBTTTBCCSSTTBCTT
T ss_pred cccccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHHHcCCcCCccCCccccccCCCcccccccc
Confidence 2457999995444344454544443333 355789999765 589999999988888887665 222111
Q ss_pred -------CCCCCHHHHHHHhhhhcCC----CCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 148 -------HKPSTWRDLERLLEGYCGC----TEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 148 -------~~~~~~e~~~~~~~~~~~~----~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.++..+.+.++++.|... .+++......++||++. ++++++++|.+.+..
T Consensus 169 ~~~~l~~r~d~~~~~~~~r~~~y~~~~~~~~~~y~~~~~~~~id~~~--~~~~v~~~I~~~l~~ 230 (233)
T 1ak2_A 169 TGEPLIRRSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQ--TPDVVFASILAAFSK 230 (233)
T ss_dssp TCCBCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTS--CHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCC--CHHHHHHHHHHHHHh
Confidence 2345677788888766432 12332223568999998 999999999998864
No 17
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.83 E-value=2.9e-19 Score=131.48 Aligned_cols=168 Identities=21% Similarity=0.225 Sum_probs=104.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh--
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL-- 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l-- 78 (203)
|+|+|||||||+|+.|++.+|++++++|++.+...... .+.+.... ........ .........+...+
T Consensus 25 l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~------~~~g~~i~--~~~~~g~~--~~~~~~~~~~~~~~~~ 94 (201)
T 2cdn_A 25 LLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEG------TKLGVEAK--RYLDAGDL--VPSDLTNELVDDRLNN 94 (201)
T ss_dssp EECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTT------CHHHHHHH--HHHHHTCC--CCHHHHHHHHHHHTTS
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcC------ChHHHHHH--HHHHcCCc--ccHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999866522100 00000000 00000000 11111222222222
Q ss_pred -hCCCcEEEeCCCCchHhHHHHHHHHHhhCC-eEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHH
Q 039424 79 -KLGVSVVVDSPLSRRAHLEKLVKLAGEMRA-GLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDL 156 (203)
Q Consensus 79 -~~~~~vIid~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~ 156 (203)
..+.+||+|+......+.+.+..++...+. +..+|+|.+++ +++.+|+..|++. ++..+.+
T Consensus 95 ~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~-e~~~~Rl~~R~r~----------------~~~~e~~ 157 (201)
T 2cdn_A 95 PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSE-EVLLERLKGRGRA----------------DDTDDVI 157 (201)
T ss_dssp GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCH-HHHHHHHHHHCCT----------------TCSHHHH
T ss_pred ccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCH-HHHHHHHHcCCCC----------------CCCHHHH
Confidence 346679999865554555666555554443 34688998866 5899999998542 1366777
Q ss_pred HHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 157 ERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 157 ~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
.++++.|.... .++ ....++||++. +++++.++|.+.+.
T Consensus 158 ~~r~~~~~~~~~~~~~~~--~~~~~~Id~~~--~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 158 LNRMKVYRDETAPLLEYY--RDQLKTVDAVG--TMDEVFARALRALG 200 (201)
T ss_dssp HHHHHHHHHHTTTHHHHT--TTTEEEEECCS--CHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHh--cCcEEEEeCCC--CHHHHHHHHHHHHc
Confidence 77776654221 223 33678999988 99999999998875
No 18
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.82 E-value=4.2e-20 Score=133.39 Aligned_cols=161 Identities=15% Similarity=0.106 Sum_probs=97.7
Q ss_pred CCCCCCCChHHHHHHHHH-hCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh-
Q 039424 1 MKGHPGTGKSTLADAIAS-ALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL- 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~-~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l- 78 (203)
|+|+|||||||+|+.|++ .+++.++++|.+++.+.+..... ..+. . . .........+...+...+
T Consensus 7 i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~--~~~~-~------~----~~~~~~~~~~~~~~~~~l~ 73 (181)
T 1ly1_A 7 TIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERD--EYKY-T------K----KKEGIVTGMQFDTAKSILY 73 (181)
T ss_dssp EECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGG--GCCC-C------H----HHHHHHHHHHHHHHHHHHT
T ss_pred EecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccc--hhhh-c------h----hhhhHHHHHHHHHHHHHHh
Confidence 579999999999999998 68999999998876544210000 0000 0 0 001122344555666777
Q ss_pred --hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHH
Q 039424 79 --KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDL 156 (203)
Q Consensus 79 --~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~ 156 (203)
..|.+||+|+.+....+++.+.+++...+.++.+|+|.+++ +++.+|+..|..+. ...+.+
T Consensus 74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~-~~~~~R~~~R~~~~----------------~~~~~i 136 (181)
T 1ly1_A 74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPW-TELVKRNSKRGTKA----------------VPIDVL 136 (181)
T ss_dssp SCSSCCEEEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCH-HHHHHHHTTCGGGC----------------CCHHHH
T ss_pred hccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCH-HHHHHHHhccccCC----------------CCHHHH
Confidence 77889999998777777788887777778888899999765 58999999986532 356778
Q ss_pred HHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 157 ERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
.++++.|.....+ ..++||++. + +++...|...+.
T Consensus 137 ~~~~~~~~~~~~~-----~~~~id~~~--~-~~v~~~i~~~l~ 171 (181)
T 1ly1_A 137 RSMYKSMREYLGL-----PVYNGTPGK--P-KAVIFDVDGTLA 171 (181)
T ss_dssp HHHHHHHHHHHTC-----CCC----------------------
T ss_pred HHHHHHhhccCCC-----CccccCCCC--C-ceeeehhhhhhh
Confidence 8888777654222 124577766 3 777777766554
No 19
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.82 E-value=8.6e-20 Score=135.65 Aligned_cols=182 Identities=16% Similarity=0.174 Sum_probs=112.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|++.+|++++++|++.+.... .+++.+.... .......+ .....+...+...+..
T Consensus 5 l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~------~~~~~g~~i~--~~~~~g~~--~~~~~~~~~i~~~l~~ 74 (214)
T 1e4v_A 5 LLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVK------SGSELGKQAK--DIMDAGKL--VTDELVIALVKERIAQ 74 (214)
T ss_dssp EEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHH------HTCTTTGGGH--HHHHHTCC--CCHHHHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHH------cCChHHHHHH--HHHHCCCc--CCHHHHHHHHHHHHhc
Confidence 579999999999999999999999999998665321 1122221110 00001111 1223344444444443
Q ss_pred ---CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCC----CCCCCC------
Q 039424 81 ---GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGD----DRPSSW------ 147 (203)
Q Consensus 81 ---~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~----~~~~~~------ 147 (203)
+.+||+|+..........+ ......+..+|+|++++ +++.+|+..|..++.||..|+ +|+...
T Consensus 75 ~~~~~~~i~dg~~~~~~~~~~l---~~~~~~~d~vi~l~~~~-e~~~~R~~~R~~~~~~g~~~~~~~~pp~~~~~~~~~~ 150 (214)
T 1e4v_A 75 EDCRNGFLLDGFPRTIPQADAM---KEAGINVDYVLEFDVPD-ELIVDRIVGRRVHAPSGRVYHVKFNPPKVEGKDDVTG 150 (214)
T ss_dssp GGGGGCEEEESCCCSHHHHHHH---HHTTCCCSEEEEEECCH-HHHHHHHHTEEEETTTTEEEETTTBCCSSTTBCTTTC
T ss_pred cccCCCEEEeCCCCCHHHHHHH---HhcCCCCCEEEEEECCH-HHHHHHHHCCcccCCcCCcccccCCCCCccccccccc
Confidence 3569999953333332332 22112344688888765 589999999987777776554 333221
Q ss_pred -----CCCCCHHHHHHHhhhhcCCCC----CCCCC-----CCeEEEecCCCCChHHHHHHHHHHH
Q 039424 148 -----HKPSTWRDLERLLEGYCGCTE----YDVGD-----VPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 148 -----~~~~~~e~~~~~~~~~~~~~~----~~~~~-----~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
+.+++.+.+.+|++.|..... ++... ...++||++. ++++++++|.+.+
T Consensus 151 ~~l~~r~dd~~~~~~~rl~~y~~~~~~l~~~~~~~~~~~~~~~~~ida~~--~~~~v~~~i~~~l 213 (214)
T 1e4v_A 151 EELTTRKDDQEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTK--PVAEVRADLEKIL 213 (214)
T ss_dssp CBCBCCTTCSHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTS--CHHHHHHHHHHHH
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEEEEECCC--CHHHHHHHHHHHh
Confidence 345667888888887754332 33211 3568899999 9999999999876
No 20
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.82 E-value=1.9e-19 Score=130.79 Aligned_cols=168 Identities=22% Similarity=0.214 Sum_probs=103.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHH-hhhhhhhhHHHHHHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAA-SSLLNDLSYDVIWKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~ 79 (203)
|+|+|||||||+++.|++.+|++++++|++.+...+. +.+.+... .... .... .....+...+...+.
T Consensus 9 l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~------~~~~~~~i---~~~~~~g~~--~~~~~~~~~~~~~l~ 77 (186)
T 3cm0_A 9 FLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVAR------GTPLGERV---RPIMERGDL--VPDDLILELIREELA 77 (186)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHT------TCHHHHHH---HHHHHTTCC--CCHHHHHHHHHHHCC
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHc------CChHHHHH---HHHHHcCCc--CCHHHHHHHHHHHhc
Confidence 5799999999999999999999999999886643210 00000000 0000 0000 122233344445454
Q ss_pred CCCcEEEeCCCCchHhHHHHHHHHHhhCC-eEEEEEecCCCHHHHHHHHHhcC---CCCCCCccCCCCCCCCCCCCCHHH
Q 039424 80 LGVSVVVDSPLSRRAHLEKLVKLAGEMRA-GLVIVECKPSDEAEWRRRLEGRG---NEGGCGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 80 ~~~~vIid~~~~~~~~~~~~~~~~~~~~~-~~~~v~l~~~~~e~~~~R~~~R~---~~~~~~~~~~~~~~~~~~~~~~e~ 155 (203)
.+ +|+|+......+...+..++...+. +..+|+|.+++ +++.+|+..|. .. .++..+.
T Consensus 78 ~~--~i~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~-e~~~~R~~~R~~~~~r---------------~~~~~~~ 139 (186)
T 3cm0_A 78 ER--VIFDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPE-EELVRRILRRAELEGR---------------SDDNEET 139 (186)
T ss_dssp SE--EEEESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCH-HHHHHHHHHHHHHHTC---------------SSCCHHH
T ss_pred CC--EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCH-HHHHHHHHhccccCCC---------------CCCCHHH
Confidence 44 9999965555555555544444443 44688888865 58999999885 22 1235667
Q ss_pred HHHHhhhhcCC----CCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 156 LERLLEGYCGC----TEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 156 ~~~~~~~~~~~----~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
+.+++..|... .+++......++||++. +++++.++|.+.+.
T Consensus 140 ~~~r~~~~~~~~~~l~~~~~~~~~~~~id~~~--~~~~v~~~i~~~l~ 185 (186)
T 3cm0_A 140 VRRRLEVYREKTEPLVGYYEARGVLKRVDGLG--TPDEVYARIRAALG 185 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEEEEECCS--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcEEEEECCC--CHHHHHHHHHHHhc
Confidence 77666655321 12222223468999988 99999999998764
No 21
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.82 E-value=1.6e-19 Score=132.10 Aligned_cols=173 Identities=14% Similarity=0.168 Sum_probs=105.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHH-hhh--hhhhhHHHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAA-SSL--LNDLSYDVIWKIASTQ 77 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~ 77 (203)
|+|+|||||||+|+.|++.+|+++++.|++.+...... .+.+... .... .+. ..+..+..+.+.+...
T Consensus 14 l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~------~~~~~~i---~~~~~~g~~~~~~~~~~~~~~~i~~~ 84 (196)
T 2c95_A 14 VVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSG------SARGKKL---SEIMEKGQLVPLETVLDMLRDAMVAK 84 (196)
T ss_dssp EEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTT------CHHHHHH---HHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcC------ChHHHHH---HHHHHcCCcCCHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999866532100 0000000 0000 000 0112334455555556
Q ss_pred hhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH
Q 039424 78 LKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE 157 (203)
Q Consensus 78 l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~ 157 (203)
+..|.+||+|+......+...+.... ..+..+|+|.+++ +++.+|+..|+... .+..+..+.+.
T Consensus 85 ~~~~~~vi~d~~~~~~~~~~~~~~~~---~~~~~vi~l~~~~-e~~~~R~~~R~~~~------------~~~~~~~~~~~ 148 (196)
T 2c95_A 85 VNTSKGFLIDGYPREVQQGEEFERRI---GQPTLLLYVDAGP-ETMTQRLLKRGETS------------GRVDDNEETIK 148 (196)
T ss_dssp TTTCSCEEEESCCCSHHHHHHHHHHT---CCCSEEEEEECCH-HHHHHHHHHHHTSS------------SCGGGSHHHHH
T ss_pred cccCCcEEEeCCCCCHHHHHHHHHhc---CCCCEEEEEECCH-HHHHHHHHccCCcC------------CCCCCCHHHHH
Confidence 66788899999544444444443332 3344788998765 58999999886421 01123556666
Q ss_pred HHhhhhcCCCC----CCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 158 RLLEGYCGCTE----YDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 158 ~~~~~~~~~~~----~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
++++.+..... ++......++||++. ++++++++|.+.+..
T Consensus 149 ~r~~~~~~~~~~~~~~~~~~~~~~~Id~~~--~~e~v~~~i~~~l~~ 193 (196)
T 2c95_A 149 KRLETYYKATEPVIAFYEKRGIVRKVNAEG--SVDSVFSQVCTHLDA 193 (196)
T ss_dssp HHHHHHHHHTHHHHHHHHHHTCEEEEECCS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcEEEEECCC--CHHHHHHHHHHHHHH
Confidence 66665432211 122223456899988 999999999998864
No 22
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=133.16 Aligned_cols=168 Identities=11% Similarity=0.170 Sum_probs=103.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhh--------hhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLS--------LQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWK 72 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (203)
|+|+|||||||+|+.|++.+|+.++++|++.+.... +...+..+.. ...+.....+.+
T Consensus 17 l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~--------------~~~~~~~~~~~~ 82 (199)
T 2bwj_A 17 IIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDL--------------VPSGIVLELLKE 82 (199)
T ss_dssp EEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCC--------------CCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCc--------------CCHHHHHHHHHH
Confidence 579999999999999999999999999998655321 0000100000 001122333444
Q ss_pred HHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCC
Q 039424 73 IASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPST 152 (203)
Q Consensus 73 ~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~ 152 (203)
.+...+..+..||+|+.......+..+.. ..+.+..+|+|.+++ +++.+|+..|.... ...++.
T Consensus 83 ~i~~~~~~~~~vi~dg~~~~~~~~~~l~~---~~~~~~~~i~l~~~~-~~~~~R~~~R~~~~------------~~~~~~ 146 (199)
T 2bwj_A 83 AMVASLGDTRGFLIDGYPREVKQGEEFGR---RIGDPQLVICMDCSA-DTMTNRLLQMSRSS------------LPVDDT 146 (199)
T ss_dssp HHHHHTTSCSCEEEETCCSSHHHHHHHHH---HTCCCSEEEEEECCH-HHHHHHHHHTCCCC------------SCHHHH
T ss_pred HHhcccccCccEEEeCCCCCHHHHHHHHH---hcCCCCEEEEEECCH-HHHHHHHHcCCCCC------------CCCCCC
Confidence 45555556888999986655555444432 223445689999865 58999999986421 001123
Q ss_pred HHHHHHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 153 WRDLERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 153 ~e~~~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+.+.++++.+.... .++......++||++. ++++++++|.+.+..
T Consensus 147 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~e~v~~~i~~~l~~ 196 (199)
T 2bwj_A 147 TKTIAKRLEAYYRASIPVIAYYETKTQLHKINAEG--TPEDVFLQLCTAIDS 196 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETTS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCC--CHHHHHHHHHHHHHH
Confidence 456666654432211 1122122348899887 999999999998864
No 23
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.81 E-value=1.3e-18 Score=125.24 Aligned_cols=161 Identities=17% Similarity=0.165 Sum_probs=100.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+++.|+..+|+.+++.|++.+.. .+... ..+... . ......+ +..+...+...+..
T Consensus 13 l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~-~~~~~-~~g~~~-~-----~~~~~~~-----~~~~~~~~~~~~~~ 79 (175)
T 1knq_A 13 LMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR-NIEKM-ASGEPL-N-----DDDRKPW-----LQALNDAAFAMQRT 79 (175)
T ss_dssp EECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHH-HHHHH-HTTCCC-C-----HHHHHHH-----HHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHhhCcEEEeCccccchH-HHHHh-hcCcCC-C-----ccccccH-----HHHHHHHHHHHHhc
Confidence 5799999999999999999999999999985321 01000 000110 0 0001111 12223334444556
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHh
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLL 160 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 160 (203)
+..+|+|.+.....+++.+ +..+.++.+|+|.+++ +++.+|+..|+.+. ...+.+...+
T Consensus 80 ~~~~vi~~~~~~~~~~~~l----~~~~~~~~vv~l~~~~-e~~~~R~~~R~~~~----------------~~~~~~~~~~ 138 (175)
T 1knq_A 80 NKVSLIVCSALKKHYRDLL----REGNPNLSFIYLKGDF-DVIESRLKARKGHF----------------FKTQMLVTQF 138 (175)
T ss_dssp CSEEEEECCCCSHHHHHHH----HTTCTTEEEEEEECCH-HHHHHHHHTSTTCC----------------CCHHHHHHHH
T ss_pred CCcEEEEeCchHHHHHHHH----HhcCCCEEEEEEECCH-HHHHHHHHhccCCC----------------CchHHHHHHH
Confidence 7789999876665555443 2334456789999865 58999999986542 1344444444
Q ss_pred hhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 161 EGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
..+.+. ++. ....++||++. ++++++++|.+.+..
T Consensus 139 ~~~~~~--~~~-~~~~~~Id~~~--~~~~~~~~i~~~l~~ 173 (175)
T 1knq_A 139 ETLQEP--GAD-ETDVLVVDIDQ--PLEGVVASTIEVIKK 173 (175)
T ss_dssp HHCCCC--CTT-CTTEEEEECSS--CHHHHHHHHHHHHHC
T ss_pred HhhhCc--ccC-CCCeEEEeCCC--CHHHHHHHHHHHHhc
Confidence 433321 122 23679999998 999999999998865
No 24
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.81 E-value=4.9e-19 Score=130.37 Aligned_cols=175 Identities=11% Similarity=0.154 Sum_probs=105.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhh--hhhhHHHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLL--NDLSYDVIWKIASTQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~l 78 (203)
|+|+|||||||+|+.|++.+|++++++|++.+..... .+.+.+.... .....+.+ ....+..+.+.+...+
T Consensus 20 l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~-----~~~~~~~~i~--~~~~~g~~~~~~~~~~~l~~~i~~~l 92 (203)
T 1ukz_A 20 VLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGR-----AGSQYGELIK--NCIKEGQIVPQEITLALLRNAISDNV 92 (203)
T ss_dssp EECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHS-----TTCSCHHHHH--HHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhc-----cCCHHHHHHH--HHHHcCCcCCHHHHHHHHHHHHHhhh
Confidence 5799999999999999999999999999986653210 0011100000 00000111 1233445555555666
Q ss_pred hCC-CcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH
Q 039424 79 KLG-VSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE 157 (203)
Q Consensus 79 ~~~-~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~ 157 (203)
..| ..+|+||..........+.... ..+..+|+|.+++ +++.+|+..|+... .+.++..+.+.
T Consensus 93 ~~g~~~~i~dg~~~~~~~~~~~~~~~---~~~~~~i~l~~~~-e~~~~Rl~~R~~~~------------~~~~~~~e~~~ 156 (203)
T 1ukz_A 93 KANKHKFLIDGFPRKMDQAISFERDI---VESKFILFFDCPE-DIMLERLLERGKTS------------GRSDDNIESIK 156 (203)
T ss_dssp HTTCCEEEEETCCCSHHHHHHHHHHT---CCCSEEEEEECCH-HHHHHHHHHHHHHH------------CCTTCSHHHHH
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHhc---CCCCEEEEEECCH-HHHHHHHHhccccC------------CCCCCCHHHHH
Confidence 666 5799998654433333333222 2244688898766 58999998885321 01224677777
Q ss_pred HHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 158 RLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 158 ~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+++..|.... +++......++||++. +++++.++|.+.+..
T Consensus 157 ~r~~~~~~~~~~~~~~~~~~~~vi~id~~~--~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 157 KRFNTFKETSMPVIEYFETKSKVVRVRCDR--SVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHHHHHHHTTHHHHHHHHTTTCEEEEECSS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHhcCcEEEEECCC--CHHHHHHHHHHHHhc
Confidence 7765543211 1222334556799998 999999999998864
No 25
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.80 E-value=7.9e-19 Score=129.12 Aligned_cols=160 Identities=13% Similarity=0.147 Sum_probs=103.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+++.|+..+|..+++.|++.......... .+.. .. ..... ..+..+...+...+..
T Consensus 34 l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~--~g~~-~~-----~~~~~-----~~~~~~~~~~~~~~~~ 100 (200)
T 4eun_A 34 VMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQ--RGIP-LT-----DEDRW-----PWLRSLAEWMDARADA 100 (200)
T ss_dssp EECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHH--TTCC-CC-----HHHHH-----HHHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHh--cCCC-CC-----Ccccc-----cHHHHHHHHHHHHHhc
Confidence 5799999999999999999999999999885321100000 0000 00 01011 1122333344455567
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHh
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLL 160 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 160 (203)
+..+|+|++......++.+.. ...++.+|+|.+++ +++.+|+..|...+ ...+.+...+
T Consensus 101 g~~viid~~~~~~~~~~~l~~----~~~~~~vv~l~~~~-e~l~~Rl~~R~~~~----------------~~~~~l~~~~ 159 (200)
T 4eun_A 101 GVSTIITCSALKRTYRDVLRE----GPPSVDFLHLDGPA-EVIKGRMSKREGHF----------------MPASLLQSQL 159 (200)
T ss_dssp TCCEEEEECCCCHHHHHHHTT----SSSCCEEEEEECCH-HHHHHHHTTCSCCS----------------SCGGGHHHHH
T ss_pred CCCEEEEchhhhHHHHHHHHH----hCCceEEEEEeCCH-HHHHHHHHhcccCC----------------CCHHHHHHHH
Confidence 788999998776665555332 23456789999865 58999999987653 2344555555
Q ss_pred hhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 161 EGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+++ .+. ....++||++. ++++++++|.+.+..
T Consensus 160 ~~~~~---~~~-~~~~~~Id~~~--~~~e~~~~I~~~l~~ 193 (200)
T 4eun_A 160 ATLEA---LEP-DESGIVLDLRQ--PPEQLIERALTWLDI 193 (200)
T ss_dssp HHCCC---CCT-TSCEEEEETTS--CHHHHHHHHHHHHCC
T ss_pred HHhCC---CCC-CCCeEEEECCC--CHHHHHHHHHHHHHh
Confidence 54432 222 12679999988 999999999998874
No 26
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.80 E-value=9.3e-19 Score=128.66 Aligned_cols=158 Identities=14% Similarity=0.109 Sum_probs=94.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+++.|++.+|+++++.|++.+...+. +. ...+. ......+..+...+...+..
T Consensus 30 l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~--------~i-------~~~~~-~~~~~~~~~~e~~~l~~l~~ 93 (199)
T 3vaa_A 30 LTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHK--------TV-------GELFT-ERGEAGFRELERNMLHEVAE 93 (199)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTS--------CH-------HHHHH-HHHHHHHHHHHHHHHHHHTT
T ss_pred EEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCC--------cH-------HHHHH-hcChHHHHHHHHHHHHHHhh
Confidence 5799999999999999999999999999987653321 10 01110 11111222222223333445
Q ss_pred CCcEEEeCCC---CchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHH-hcCCCCCCCccCCCCCCCCCCCCCHHH-
Q 039424 81 GVSVVVDSPL---SRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLE-GRGNEGGCGVVGDDRPSSWHKPSTWRD- 155 (203)
Q Consensus 81 ~~~vIid~~~---~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~-~R~~~~~~~~~~~~~~~~~~~~~~~e~- 155 (203)
+..+|++.+. .....++.+.. . ..+|+|.+++ +++.+|+. .|...+ .......+.
T Consensus 94 ~~~~vi~~ggg~~~~~~~~~~l~~----~---~~vi~L~~~~-e~l~~Rl~~~~~~Rp------------~~~~~~~~~~ 153 (199)
T 3vaa_A 94 FENVVISTGGGAPCFYDNMEFMNR----T---GKTVFLNVHP-DVLFRRLRIAKQQRP------------ILQGKEDDEL 153 (199)
T ss_dssp CSSEEEECCTTGGGSTTHHHHHHH----H---SEEEEEECCH-HHHHHHHHHTGGGCG------------GGTTCCHHHH
T ss_pred cCCcEEECCCcEEccHHHHHHHHc----C---CEEEEEECCH-HHHHHHHhcCCCCCC------------CcCCCChhhH
Confidence 5667777532 22233333222 2 2789999866 58999998 554332 111233333
Q ss_pred ---HHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 156 ---LERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 156 ---~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+.+..+. .+|.. ..++|||++ +++++++++|.+.+..
T Consensus 154 ~~~i~~~~~~r~---~~y~~--ad~~Idt~~-~s~ee~~~~I~~~l~~ 195 (199)
T 3vaa_A 154 MDFIIQALEKRA---PFYTQ--AQYIFNADE-LEDRWQIESSVQRLQE 195 (199)
T ss_dssp HHHHHHHHHHHH---HHHTT--SSEEEECCC-CSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHhh--CCEEEECCC-CCHHHHHHHHHHHHHH
Confidence 333333222 23333 569999998 8999999999998865
No 27
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.79 E-value=6.8e-18 Score=122.12 Aligned_cols=160 Identities=13% Similarity=0.137 Sum_probs=96.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee-chhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI-DKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 79 (203)
|+|+|||||||+|+.|++.++++++ +.+.+...+ ...+..+.+.+. ... .....+.+.+...+.
T Consensus 10 l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~~i---~~~~~~g~~~~~--------~~~----~~~~~~~~~i~~~l~ 74 (183)
T 2vli_A 10 INGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQAL---RKLTPGFSGDPQ--------EHP----MWIPLMLDALQYASR 74 (183)
T ss_dssp EECCC----CHHHHHHHHHSTTCEECCTHHHHHHH---HHTSTTCCSCGG--------GST----THHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCCEEEchhhhHHHH---HHhCccccchhh--------hhH----HHHHHHHHHHHHHHH
Confidence 5899999999999999999999988 533221111 111110011000 000 011222333444455
Q ss_pred C-CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHH
Q 039424 80 L-GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLER 158 (203)
Q Consensus 80 ~-~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 158 (203)
. |..||+|+++.....++.+...+...+..+..|+|.+++ +++.+|+..|..++ ...+.+..
T Consensus 75 ~~g~~vi~d~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~-e~~~~R~~~R~~r~----------------~~~~~~~~ 137 (183)
T 2vli_A 75 EAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPL-NVVLERLRRDGQPQ----------------VNVGTVED 137 (183)
T ss_dssp HCSSCEEEEECCCCHHHHHHHHHHHHHTTCCCEEEEEECCH-HHHHHHHHTC--------------------CCHHHHHH
T ss_pred hCCCcEEEeeeccCHHHHHHHHHHHHhcCCceEEEEEeCCH-HHHHHHHHhccccc----------------hhHHHHHH
Confidence 4 777999998877666666666666666666678999865 58999999886432 23456666
Q ss_pred HhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 159 LLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
..+.+.+. . . .. +||+++ .++++++++|.+.+..
T Consensus 138 ~~~~~~~~-~---~--~~-~Id~~~-~~~~~~~~~I~~~l~~ 171 (183)
T 2vli_A 138 RLNELRGE-Q---F--QT-HIDTAG-LGTQQVAEQIAAQVGL 171 (183)
T ss_dssp HHHHHTSG-G---G--CS-EEECTT-CCHHHHHHHHHHHHTC
T ss_pred HHHhhccc-c---c--ce-EeeCCC-CCHHHHHHHHHHHHHH
Confidence 66666544 2 1 33 999995 5999999999998864
No 28
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.79 E-value=4.4e-18 Score=121.89 Aligned_cols=146 Identities=19% Similarity=0.236 Sum_probs=94.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+++.|++.+++++++.|.+....... ..+... ...+..
T Consensus 6 l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~------------------------------~~~~~~-~~~l~~ 54 (173)
T 3kb2_A 6 LEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGN------------------------------EKLFEH-FNKLAD 54 (173)
T ss_dssp EECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTCH------------------------------HHHHHH-HHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHhCCeeecCcccccchhHH------------------------------HHHHHH-HHHHHh
Confidence 5899999999999999999999999999885432100 001111 123455
Q ss_pred CCcEEEeCC---------------CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCC
Q 039424 81 GVSVVVDSP---------------LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPS 145 (203)
Q Consensus 81 ~~~vIid~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~ 145 (203)
+..+|+|.. .....++..+.. ....+..+|+|.+++ +++.+|+..|++..
T Consensus 55 ~~~vi~dr~~~~~~v~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~i~l~~~~-e~~~~R~~~r~r~~----------- 119 (173)
T 3kb2_A 55 EDNVIIDRFVYSNLVYAKKFKDYSILTERQLRFIED---KIKAKAKVVYLHADP-SVIKKRLRVRGDEY----------- 119 (173)
T ss_dssp CCSEEEESCHHHHHHHTTTBTTCCCCCHHHHHHHHH---HHTTTEEEEEEECCH-HHHHHHHHHHSCSC-----------
T ss_pred CCCeEEeeeecchHHHHHHHHHhhHhhHHHHHHHhc---cCCCCCEEEEEeCCH-HHHHHHHHhcCCcc-----------
Confidence 777888842 112233333222 223456789998765 58999999985432
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 146 SWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 146 ~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
...+.+.+..+.|......+. ...++||+++ .++++++++|.+.+++
T Consensus 120 -----~~~~~~~~~~~~~~~~~~~~~--~~~~~id~~~-~~~~ev~~~I~~~~~~ 166 (173)
T 3kb2_A 120 -----IEGKDIDSILELYREVMSNAG--LHTYSWDTGQ-WSSDEIAKDIIFLVEL 166 (173)
T ss_dssp -----CCHHHHHHHHHHHHHHHHTCS--SCEEEEETTT-SCHHHHHHHHHHHHHH
T ss_pred -----hhhhHHHHHHHHHHHHHhhcC--CCEEEEECCC-CCHHHHHHHHHHHHhC
Confidence 233344444444443333333 3679999996 6999999999998875
No 29
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.78 E-value=2.3e-18 Score=126.70 Aligned_cols=167 Identities=16% Similarity=0.110 Sum_probs=108.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhh-----hhhhhh-ccC----CCcccc-------chHHHHHhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLS-----LQQTLQ-KTT----PHHQHA-------TSAAAAASSLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~-----~~~~~~-~~~----~~~~~~-------~~~~~~~~~~~~ 63 (203)
|||.+||||||+++.|++ +|++++|+|.+.+.+.. ...... ++. +.+... .+.......+++
T Consensus 14 lTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~~~L~ 92 (210)
T 4i1u_A 14 LTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDARRRLE 92 (210)
T ss_dssp EECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHHHHHH
Confidence 589999999999999996 99999999999776441 111111 111 111100 011122234455
Q ss_pred hhhHHHHHHHHHHHhhC--CCcEEEeCCCCch-HhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccC
Q 039424 64 DLSYDVIWKIASTQLKL--GVSVVVDSPLSRR-AHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVG 140 (203)
Q Consensus 64 ~~~~~~l~~~~~~~l~~--~~~vIid~~~~~~-~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~ 140 (203)
.+.++.+.+.+...+.. ...+|+|.+...+ ..+.. .+ + .+|++.+++ ++..+|+..|.+.
T Consensus 93 ~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~~~~---~~---D---~vi~V~ap~-e~r~~Rl~~Rdg~------- 155 (210)
T 4i1u_A 93 AITHPLIRAETEREARDAQGPYVIFVVPLLVESRNWKA---RC---D---RVLVVDCPV-DTQIARVMQRNGF------- 155 (210)
T ss_dssp HHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHHHHH---HC---S---EEEEEECCH-HHHHHHHHHHHCC-------
T ss_pred HHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCCccc---cC---C---eEEEEECCH-HHHHHHHHhcCCC-------
Confidence 55666666655555443 3458999987765 43322 22 2 567777765 5899999999643
Q ss_pred CCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecC-CCCChHHHHHHHHHHHhc
Q 039424 141 DDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTT-ASVGFQELVSNVIEFILH 200 (203)
Q Consensus 141 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~~~~e~~~~i~~~i~~ 200 (203)
+.+++.++++.+.+..+.... ++++|||+ + +++++.++|...+..
T Consensus 156 -----------s~eea~~ri~~Q~~~eek~~~--AD~VIdN~~g--sle~l~~qV~~l~~~ 201 (210)
T 4i1u_A 156 -----------TREQVEAIIARQATREARLAA--ADDVIVNDAA--TPDALAVQVDALHQR 201 (210)
T ss_dssp -----------CHHHHHHHHHHSCCHHHHHHT--CSEEEECSSC--CHHHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHcCChHHHHHh--CCEEEECCCC--CHHHHHHHHHHHHHH
Confidence 678888888876554333333 56999999 8 999999999887764
No 30
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.78 E-value=4.6e-18 Score=122.56 Aligned_cols=166 Identities=15% Similarity=0.138 Sum_probs=96.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee--chhhHhhhhhhhhhhhhccCCCccccchHHHHH-hhhhhhhhHHHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI--DKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAA-SSLLNDLSYDVIWKIASTQ 77 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 77 (203)
|+|+|||||||+++.|++.++..++ +.|.+++...+.... ...+.......... ...++ ..+..+...+...
T Consensus 8 l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (178)
T 1qhx_A 8 LNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQS----AEGGIEFDADGGVSIGPEFR-ALEGAWAEGVVAM 82 (178)
T ss_dssp EECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGT----STTSEEECTTSCEEECHHHH-HHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhcc----chhhccccCCCccccchhHH-HHHHHHHHHHHHH
Confidence 5899999999999999999987765 588886643321000 00000000000000 00010 1123333445556
Q ss_pred hhCCCcEEEeCCCC-chHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHH
Q 039424 78 LKLGVSVVVDSPLS-RRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDL 156 (203)
Q Consensus 78 l~~~~~vIid~~~~-~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~ 156 (203)
+..|.++|+|+.+. ....++.+++... +.++.+|+|.|++ +++.+|+..|...+ ....
T Consensus 83 ~~~g~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~v~l~~~~-e~l~~R~~~r~~~~----------------~~~~-- 141 (178)
T 1qhx_A 83 ARAGARIIIDDVFLGGAAAQERWRSFVG--DLDVLWVGVRCDG-AVAEGRETARGDRV----------------AGMA-- 141 (178)
T ss_dssp HHTTCEEEEEECCTTTHHHHHHHHHHHT--TCCEEEEEEECCH-HHHHHHHHHTSSSC----------------TTHH--
T ss_pred HhcCCeEEEEeccccChHHHHHHHHHhc--CCcEEEEEEECCH-HHHHHHHHhhCCcc----------------cchh--
Confidence 67788899999764 3344455554442 4566788898865 58999999986543 1111
Q ss_pred HHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 157 ERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
....+. . +......++|||++ .++++++++|.+.+.
T Consensus 142 ~~~~~~---~---~~~~~~d~~idt~~-~~~~~~~~~I~~~l~ 177 (178)
T 1qhx_A 142 AKQAYV---V---HEGVEYDVEVDTTH-KESIECAWAIAAHVV 177 (178)
T ss_dssp HHHTTG---G---GTTCCCSEEEETTS-SCHHHHHHHHHTTCC
T ss_pred hhhchh---h---ccCCCCcEEEECCC-CCHHHHHHHHHHHhc
Confidence 111111 1 11122569999998 899999999987653
No 31
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.76 E-value=5.4e-18 Score=122.95 Aligned_cols=159 Identities=15% Similarity=0.139 Sum_probs=90.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHH-HHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIW-KIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~ 79 (203)
|+|+|||||||+|+.|++.+|++++++|.+++...+. +. ...+. ..+...+..+. +.+.....
T Consensus 10 l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~--------~~-------~~~~~-~~g~~~~~~~~~~~~~~~~~ 73 (185)
T 3trf_A 10 LIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGA--------DI-------AWIFE-MEGEAGFRRREREMIEALCK 73 (185)
T ss_dssp EECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTS--------CH-------HHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCC--------Ch-------hhHHH-HhCHHHHHHHHHHHHHHHHh
Confidence 5799999999999999999999999999997764321 10 01100 01111222222 22223233
Q ss_pred CCCcEEEeCC--CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHH--HhcCCCCCCCccCCCCCCCCCCCC-CHH
Q 039424 80 LGVSVVVDSP--LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRL--EGRGNEGGCGVVGDDRPSSWHKPS-TWR 154 (203)
Q Consensus 80 ~~~~vIid~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~--~~R~~~~~~~~~~~~~~~~~~~~~-~~e 154 (203)
....+|..+. ......++.+.. .+ .+|+|.+++ +++.+|+ ..+...+ ..... ..+
T Consensus 74 ~~~~vi~~gg~~~~~~~~~~~l~~----~~---~vi~L~~~~-e~l~~Rl~~~~~~~rp------------~~~~~~~~~ 133 (185)
T 3trf_A 74 LDNIILATGGGVVLDEKNRQQISE----TG---VVIYLTASI-DTQLKRIGQKGEMRRP------------LFIKNNSKE 133 (185)
T ss_dssp SSSCEEECCTTGGGSHHHHHHHHH----HE---EEEEEECCH-HHHHHHHHCCTTCSSC------------CCCCHHHHH
T ss_pred cCCcEEecCCceecCHHHHHHHHh----CC---cEEEEECCH-HHHHHHHhhcCCCCCC------------CCCCCCHHH
Confidence 3333444442 333344443332 23 688998765 5899999 4443332 01111 134
Q ss_pred HHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 155 DLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+....+.+.+. |... ..++||+++ .++++++++|.+.+..
T Consensus 134 ~l~~~~~~r~~~--y~~~--ad~~Idt~~-~~~~e~~~~I~~~l~~ 174 (185)
T 3trf_A 134 KLQQLNEIRKPL--YQAM--ADLVYPTDD-LNPRQLATQILVDIKQ 174 (185)
T ss_dssp HHHHHHHHHHHH--HHHH--CSEEEECTT-CCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHH--Hhhc--CCEEEECCC-CCHHHHHHHHHHHHHH
Confidence 445444443321 1111 459999998 7999999999998764
No 32
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.76 E-value=6e-18 Score=126.31 Aligned_cols=183 Identities=13% Similarity=0.102 Sum_probs=102.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHH-hhhh--hhhhHHHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAA-SSLL--NDLSYDVIWKIASTQ 77 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~l~~~~~~~ 77 (203)
|+|+|||||||+++.|++++++.++++|++.+...+.. .+.+... .... .+.. .+.....+...+...
T Consensus 10 l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~------~~~g~~i---~~~~~~g~~~~~~~~~~~~~~~~~~~ 80 (222)
T 1zak_A 10 ISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAG------SENGKRA---KEFMEKGQLVPDEIVVNMVKERLRQP 80 (222)
T ss_dssp EEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHT------CHHHHHH---HHHHHTTCCCCHHHHHHHHHHHHHSH
T ss_pred EECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcC------CchhHHH---HHHHHcCCcCCHHHHHHHHHHHHhhc
Confidence 57999999999999999999999999999866522100 0000000 0000 0000 001111111111111
Q ss_pred hhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCC----CCCCC-------
Q 039424 78 LKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGD----DRPSS------- 146 (203)
Q Consensus 78 l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~----~~~~~------- 146 (203)
...+.++|+||......+... +......+..+|+|++++ +++.+|+..|..++.||..|+ +|+..
T Consensus 81 ~~~~~~~vidg~~~~~~~~~~---l~~~~~~~~~vi~L~~~~-~~~~~R~~~r~~~~~~g~~~~~~~~pp~~~~~~~~l~ 156 (222)
T 1zak_A 81 DAQENGWLLDGYPRSYSQAMA---LETLEIRPDTFILLDVPD-ELLVERVVGRRLDPVTGKIYHLKYSPPENEEIASRLT 156 (222)
T ss_dssp HHHHTCEEEESCCCSHHHHHH---HHTTTCCCSEEEEEECCH-HHHHHHHTTEEECTTTCCEEESSSSCCCSSGGGGGCB
T ss_pred cccCCcEEEECCCCCHHHHHH---HHHcCCCCCEEEEEECCH-HHHHHHHHcCCcccccCCccccccCCCcccccccccc
Confidence 112346888984433333333 222112345789999866 589999999887776775443 22210
Q ss_pred CCCCCCHHHHHHHhhhhcC----CCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 147 WHKPSTWRDLERLLEGYCG----CTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 147 ~~~~~~~e~~~~~~~~~~~----~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
...++..+.+..|++.+.. +..++.. ..++||++. ++++++++|.+.+..
T Consensus 157 ~r~~d~~~~i~~Rl~~~~~~~~~l~~~y~~--~~~~Id~~~--~~~ev~~~I~~~l~~ 210 (222)
T 1zak_A 157 QRFDDTEEKVKLRLETYYQNIESLLSTYEN--IIVKVQGDA--TVDAVFAKIDELLGS 210 (222)
T ss_dssp CCTTCCTTHHHHHHHHHHHHHHHHHHTTCC--CEEEEECSS--CHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHHHh--cEEEEECCC--CHHHHHHHHHHHHHh
Confidence 1123455667766655432 1123322 468999977 999999999998753
No 33
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.76 E-value=3.9e-18 Score=132.88 Aligned_cols=153 Identities=16% Similarity=0.152 Sum_probs=102.8
Q ss_pred CCCCCCCChHHHHHHHHHhC-CCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh-
Q 039424 1 MKGHPGTGKSTLADAIASAL-KIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL- 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l- 78 (203)
|+|+|||||||+|+.|++++ |+.++++|.++..+.... +... ..+...........+.+.+...+
T Consensus 7 l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~-------~g~~------~~~~~~~~~~~~~~~~~~~~~~l~ 73 (301)
T 1ltq_A 7 TIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHE-------ERDE------YKYTKKKEGIVTGMQFDTAKSILY 73 (301)
T ss_dssp EECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSC-------CCC---------CCHHHHHHHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCC-------cccc------cccchhhhhHHHHHHHHHHHHHHh
Confidence 57999999999999999875 999999998876543210 1000 00000000122233445566677
Q ss_pred --hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHH
Q 039424 79 --KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDL 156 (203)
Q Consensus 79 --~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~ 156 (203)
..|.+||+|+.+....+++.+.+++...+.++.+|+|.+++ +++.+|+..|..++ ...+.+
T Consensus 74 ~~~~g~~vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~-e~~~~R~~~R~~~~----------------~~~e~i 136 (301)
T 1ltq_A 74 GGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPW-TELVKRNSKRGTKA----------------VPIDVL 136 (301)
T ss_dssp SCTTCCEEEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCH-HHHHHHHHHCGGGC----------------CCHHHH
T ss_pred hccCCCEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCH-HHHHHHHHhccCCC----------------CCHHHH
Confidence 77889999998877777888887777778888899999855 68999999987543 356777
Q ss_pred HHHhhhhcCCCC---C--CCCCCCeEEEecCC
Q 039424 157 ERLLEGYCGCTE---Y--DVGDVPKLTVDTTA 183 (203)
Q Consensus 157 ~~~~~~~~~~~~---~--~~~~~~~~~id~~~ 183 (203)
.++++.|.+... | .......+++|.++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~i~iD~dg 168 (301)
T 1ltq_A 137 RSMYKSMREYLGLPVYNGTPGKPKAVIFDVDG 168 (301)
T ss_dssp HHHHHHHHHHHTCCCCCCCTTSCEEEEEETBT
T ss_pred HHHHHHHhcccCCcceeccccccceEEEeCCC
Confidence 777776654322 1 11122456778777
No 34
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.74 E-value=1.6e-17 Score=124.47 Aligned_cols=181 Identities=19% Similarity=0.162 Sum_probs=104.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHH-hhhhhhhhHHHHHHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAA-SSLLNDLSYDVIWKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~l~ 79 (203)
|+|+|||||||+|+.|++.+|+.++++|++.+...... ++.+... .... .+.. .........+...+.
T Consensus 12 l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~------~~~g~~i---~~~~~~g~~--~~~~~~~~~~~~~l~ 80 (227)
T 1zd8_A 12 IMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRG------TEIGVLA---KAFIDQGKL--IPDDVMTRLALHELK 80 (227)
T ss_dssp EEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHT------CHHHHHH---HHHHTTTCC--CCHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcC------ChHHHHH---HHHHHcCCc--CCHHHHHHHHHHHHh
Confidence 57999999999999999999999999999866532100 1100000 0000 0000 111112222223333
Q ss_pred --CCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCC----CCCCCC------
Q 039424 80 --LGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGD----DRPSSW------ 147 (203)
Q Consensus 80 --~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~----~~~~~~------ 147 (203)
.+..||+|+......+.+.+..+ ..+..+|+|++++ +++.+|+..|..++.+|..|+ +|....
T Consensus 81 ~~~~~~~vid~~~~~~~~~~~l~~~----~~~~~vi~L~~~~-~~~~~R~~~R~~~~~~~~~y~~~~~pp~~~~~~~~~~ 155 (227)
T 1zd8_A 81 NLTQYSWLLDGFPRTLPQAEALDRA----YQIDTVINLNVPF-EVIKQRLTARWIHPASGRVYNIEFNPPKTVGIDDLTG 155 (227)
T ss_dssp TCTTSCEEEESCCCSHHHHHHHHTT----SCCCEEEEEECCH-HHHHHHHTCEEEETTTTEEEETTTBCCSSTTBCTTTC
T ss_pred cccCCCEEEeCCCCCHHHHHHHHHh----cCCCEEEEEECCH-HHHHHHHHcCcCCCccCCccccccCCCCccccccccc
Confidence 36679999965443332222211 2334688998765 589999998865555554332 332211
Q ss_pred -----CCCCCHHHHHHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 148 -----HKPSTWRDLERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 148 -----~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.++..+.+.+|+..|.... .++......++||++ ++++++++|.+.+..
T Consensus 156 ~~l~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~~~~~~~id~~---~~~~v~~~i~~~l~~ 214 (227)
T 1zd8_A 156 EPLIQREDDKPETVIKRLKAYEDQTKPVLEYYQKKGVLETFSGT---ETNKIWPYVYAFLQT 214 (227)
T ss_dssp CBCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECS---SHHHHHHHHHHHHTT
T ss_pred ccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHccCCEEEEeCC---CHHHHHHHHHHHHHh
Confidence 12346678888877765332 133212246788875 589999999998864
No 35
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.73 E-value=1.6e-16 Score=115.82 Aligned_cols=170 Identities=15% Similarity=0.114 Sum_probs=95.4
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCceechhhHhhhhhh--hhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIPLIDKDDVRDCTLS--LQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~~i~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|+|||||||+|+.|++.+ |++++++|.......+ +...+..+ ... .....-......+..+...+.
T Consensus 5 l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~~g-~~~------~~~~~~~~~~~~~~~l~~~i~ 77 (195)
T 2pbr_A 5 FEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTE-ELD------ERTELLLFEASRSKLIEEKII 77 (195)
T ss_dssp EECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHS-CCC------HHHHHHHHHHHHHHHHHHTHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHcCC-CCC------HHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999988 9999998753211111 11111111 000 000000001111233445556
Q ss_pred HHhhCCCcEEEeCC------------CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCC
Q 039424 76 TQLKLGVSVVVDSP------------LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDR 143 (203)
Q Consensus 76 ~~l~~~~~vIid~~------------~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~ 143 (203)
..+..+..+|+|.. .....+...+..+......+..+|+|.+++ +++.+|+..|++.
T Consensus 78 ~~l~~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~-e~~~~Rl~~r~~~---------- 146 (195)
T 2pbr_A 78 PDLKRDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPV-DIALRRLKEKNRF---------- 146 (195)
T ss_dssp HHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCH-HHHHHHHHTTTCC----------
T ss_pred HHHhCCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCH-HHHHHHhhccCcc----------
Confidence 66778888999942 111122222222222112455789999866 5899999865322
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 144 PSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 144 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+..+...+....|......+ ...++||++. +++++.++|.+.+..
T Consensus 147 -------~~~~~~~~~~~~~~~~~~~~---~~~~~Id~~~--~~~~~~~~i~~~l~~ 191 (195)
T 2pbr_A 147 -------ENKEFLEKVRKGFLELAKEE---ENVVVIDASG--EEEEVFKEILRALSG 191 (195)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHS---TTEEEEETTS--CHHHHHHHHHHHHHT
T ss_pred -------chHHHHHHHHHHHHHHHhhC---CCEEEEECCC--CHHHHHHHHHHHHHH
Confidence 13333333334444332222 2568999988 999999999998864
No 36
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.71 E-value=1.2e-16 Score=116.70 Aligned_cols=171 Identities=18% Similarity=0.119 Sum_probs=90.4
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCceechhhHhhhhhh--hhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIPLIDKDDVRDCTLS--LQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~~i~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|+|||||||+++.|++.+ |++++.++.......+ +...+.. .... ............+..+.+ +.
T Consensus 5 l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~g~~~~~~~~~-~~~~------~~~~~~~~~~~r~~~~~~-i~ 76 (197)
T 2z0h_A 5 FEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLE-EEVT------PKAELFLFLASRNLLVTE-IK 76 (197)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHCCC-EEEEESSCSSHHHHHHHHHHHH-SCCC------HHHHHHHHHHHHHHHHHH-HT
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEeeCCCCCcHHHHHHHHHHh-cCCC------HHHHHHHHHHHHHHHHHH-HH
Confidence 58999999999999999998 9998866432110000 0111100 0000 000000000111222333 45
Q ss_pred HHhhCCCcEEEeCC------------CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCC
Q 039424 76 TQLKLGVSVVVDSP------------LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDR 143 (203)
Q Consensus 76 ~~l~~~~~vIid~~------------~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~ 143 (203)
..+..|..||+|.. .....++..+.........|..+|+|.+++ +++.+|+..|.+.
T Consensus 77 ~~l~~g~~vi~dr~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~-e~~~~Rl~~R~~~---------- 145 (197)
T 2z0h_A 77 QYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDV-ETALKRKGELNRF---------- 145 (197)
T ss_dssp TC----CEEEEESCHHHHHHHTTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCH-HHHHHHC---CCC----------
T ss_pred HHHhCCCEEEECCChhHHHHHHHhccCCCHHHHHHHHHHhcCCCCCCEEEEEeCCH-HHHHHHHhccCcc----------
Confidence 55677888999942 123344444444443334566789999866 5899999998433
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 144 PSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 144 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+..+.+.+....|..+...+. ...++||++. +++++.++|.+.+..+
T Consensus 146 -------~~~~~~~~~~~~~~~~~~~~~--~~~~~Id~~~--~~e~~~~~i~~~l~~~ 192 (197)
T 2z0h_A 146 -------EKREFLERVREGYLVLAREHP--ERIVVLDGKR--SIEEIHRDVVREVKRR 192 (197)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHCT--TTEEEEETTS--CHHHHHHHHHHHTTCC
T ss_pred -------cHHHHHHHHHHHHHHHHHhCC--CCEEEEeCCC--CHHHHHHHHHHHHHHH
Confidence 133333333334443322222 2568899998 9999999999988753
No 37
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.71 E-value=6.7e-17 Score=117.12 Aligned_cols=159 Identities=19% Similarity=0.167 Sum_probs=88.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhH-HHHHHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSY-DVIWKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~l~ 79 (203)
|+|+|||||||+|+.|++.+|++++++|.+++...+... ...+... +...+ ......+...+.
T Consensus 7 l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~~~---------------~~~~~~~-g~~~~~~~~~~~~~~~~~ 70 (184)
T 2iyv_A 7 LVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSI---------------ADIFATD-GEQEFRRIEEDVVRAALA 70 (184)
T ss_dssp EECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCH---------------HHHHHHH-CHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCCCH---------------HHHHHHh-ChHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999776442110 0000000 00111 111122233333
Q ss_pred CCCcEEEeCCC--CchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH
Q 039424 80 LGVSVVVDSPL--SRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE 157 (203)
Q Consensus 80 ~~~~vIid~~~--~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~ 157 (203)
....+|.++.. .....++.+ . .+ .+|+|.+++ +++.+|+..|...+ .+ ...+..+.+.
T Consensus 71 ~~~~vi~~g~~~v~~~~~~~~l----~-~~---~vV~L~~~~-e~~~~Rl~~r~~r~----~~-------~~~~~~~~i~ 130 (184)
T 2iyv_A 71 DHDGVLSLGGGAVTSPGVRAAL----A-GH---TVVYLEISA-AEGVRRTGGNTVRP----LL-------AGPDRAEKYR 130 (184)
T ss_dssp HCCSEEECCTTGGGSHHHHHHH----T-TS---CEEEEECCH-HHHHHHTTCCCCCS----ST-------TSCCHHHHHH
T ss_pred cCCeEEecCCcEEcCHHHHHHH----c-CC---eEEEEeCCH-HHHHHHHhCCCCCC----Cc-------cCCCHHHHHH
Confidence 33334444431 222233322 1 23 578888765 58999999875432 00 0112233344
Q ss_pred HHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 158 RLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.....+.+ ++. ....++|||++ .++++++++|.+.+..
T Consensus 131 ~~~~~r~~---~~~-~~~~~~Idt~~-~s~ee~~~~I~~~l~~ 168 (184)
T 2iyv_A 131 ALMAKRAP---LYR-RVATMRVDTNR-RNPGAVVRHILSRLQV 168 (184)
T ss_dssp HHHHHHHH---HHH-HHCSEEEECSS-SCHHHHHHHHHTTSCC
T ss_pred HHHHHHHH---HHh-ccCCEEEECCC-CCHHHHHHHHHHHHhh
Confidence 33332221 111 11458999995 5999999999988754
No 38
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.70 E-value=1.2e-16 Score=114.47 Aligned_cols=157 Identities=15% Similarity=0.064 Sum_probs=87.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|++.+|++++++|.+.+...+ .+. ...+.. .....+..+...+...+.
T Consensus 7 l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g--------~~~-------~~~~~~-~~~~~~~~~~~~~~~~l~- 69 (173)
T 1e6c_A 7 MVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSG--------MTV-------ADVVAA-EGWPGFRRRESEALQAVA- 69 (173)
T ss_dssp EESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHC--------SCH-------HHHHHH-HHHHHHHHHHHHHHHHHC-
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhC--------CCH-------HHHHHH-cCHHHHHHHHHHHHHHhh-
Confidence 589999999999999999999999999999765321 110 010000 001111222222222234
Q ss_pred CCcEEEeCC---CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHH--hcC-CCCCCCccCCCCCCCCCCCCCHH
Q 039424 81 GVSVVVDSP---LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLE--GRG-NEGGCGVVGDDRPSSWHKPSTWR 154 (203)
Q Consensus 81 ~~~vIid~~---~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~--~R~-~~~~~~~~~~~~~~~~~~~~~~e 154 (203)
+..+|++.. ......++.+. ..+ .+|+|.+++ +++.+|+. .|. ..+ ....+
T Consensus 70 ~~~~vi~~g~~~~~~~~~~~~l~----~~~---~~i~l~~~~-e~~~~R~~~~~r~~~r~---------------~~~~~ 126 (173)
T 1e6c_A 70 TPNRVVATGGGMVLLEQNRQFMR----AHG---TVVYLFAPA-EELALRLQASLQAHQRP---------------TLTGR 126 (173)
T ss_dssp CSSEEEECCTTGGGSHHHHHHHH----HHS---EEEEEECCH-HHHHHHHHHHHCSCCCC---------------CTTHH
T ss_pred cCCeEEECCCcEEeCHHHHHHHH----cCC---eEEEEECCH-HHHHHHHhhccCCCCCC---------------cCCCC
Confidence 445666532 22333333322 222 688888765 58999998 773 221 01222
Q ss_pred HHHHHhhhh-cCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 155 DLERLLEGY-CGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 155 ~~~~~~~~~-~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
....++..+ ......+.. ..++||+++ .++++++++|.+.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~--~~~~Id~~~-~~~~~~~~~i~~~l~~ 170 (173)
T 1e6c_A 127 PIAEEMEAVLREREALYQD--VAHYVVDAT-QPPAAIVCELMQTMRL 170 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCSEEEETT-SCHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHh--CcEEEECCC-CCHHHHHHHHHHHhcc
Confidence 222222221 110111111 458999995 4999999999998764
No 39
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.70 E-value=7e-17 Score=117.27 Aligned_cols=157 Identities=21% Similarity=0.251 Sum_probs=95.3
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|+|||||||+++.|++.++ +.+++.|.++..+.+ ..... ..... ..+..+...+.
T Consensus 18 l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~--------~~~~~-----~~~r~-----~~~~~~~~~~~ 79 (186)
T 2yvu_A 18 LTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSE--------GAGFT-----REERL-----RHLKRIAWIAR 79 (186)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTT--------TCCCC-----HHHHH-----HHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhh--------ccCCC-----hhhHH-----HHHHHHHHHHH
Confidence 579999999999999998874 357888888654321 00000 00000 11112222333
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhc----CCCCCCCccCCCCCCCCCCCC
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGR----GNEGGCGVVGDDRPSSWHKPS 151 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R----~~~~~~~~~~~~~~~~~~~~~ 151 (203)
..+..|..||+|+.......++.+..+....+.++.+|+|+++++ ++.+|+..+ ....
T Consensus 80 ~~~~~g~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e-~~~~R~~~~~~~~~~~~----------------- 141 (186)
T 2yvu_A 80 LLARNGVIVICSFVSPYKQARNMVRRIVEEEGIPFLEIYVKASLE-EVIRRDPKGLYKKALKG----------------- 141 (186)
T ss_dssp HHHTTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHH-HHHHHCHHHHHHHHHTT-----------------
T ss_pred HHHhCCCEEEEeCccccHHHHHHHHHHhhccCCCeEEEEEeCCHH-HHHHhhhhhhhhHHhhc-----------------
Confidence 334667778889876666667777777766677889999998765 888886432 0010
Q ss_pred CHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 152 TWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 152 ~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
..+.+..... .|.....+.++||+++ .++++++++|.+.+..
T Consensus 142 ~~~~~~~~~~------~y~~~~~~~~~Id~~~-~~~~ev~~~I~~~l~~ 183 (186)
T 2yvu_A 142 ELENFTGITD------PYEPPENPQLVLDTES-NTIEHNVSYLYSLVKA 183 (186)
T ss_dssp CCSSCHHHHS------CCCCCSSCSEEEETTT-SCHHHHHHHHHHHHHH
T ss_pred chhhhhhhhh------cccCCCCCcEEEECCC-CCHHHHHHHHHHHHHH
Confidence 0001111111 1221123569999995 5999999999998864
No 40
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.70 E-value=1.1e-16 Score=114.45 Aligned_cols=152 Identities=19% Similarity=0.264 Sum_probs=83.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHH-HHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVI-WKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~l~ 79 (203)
|+|+|||||||+|+.|++++|++++++|.+.+...+. +. ...+. ..+...+..+ .+.+...+.
T Consensus 12 l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~g~--------~~-------~~~~~-~~g~~~~~~~~~~~l~~~~~ 75 (168)
T 1zuh_A 12 LIGFMGSGKSSLAQELGLALKLEVLDTDMIISERVGL--------SV-------REIFE-ELGEDNFRMFEKNLIDELKT 75 (168)
T ss_dssp EESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHTS--------CH-------HHHHH-HTCHHHHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHhCC--------CH-------HHHHH-HhCHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999997664321 00 01100 0001111111 122223233
Q ss_pred CCCcE-EEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcC--CCCCCCccCCCCCCCCCCCCCHHHH
Q 039424 80 LGVSV-VVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRG--NEGGCGVVGDDRPSSWHKPSTWRDL 156 (203)
Q Consensus 80 ~~~~v-Iid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~--~~~~~~~~~~~~~~~~~~~~~~e~~ 156 (203)
.+ ++ |+.+....... +. . ..+..+|+|.+++ +++.+|+..|. ..+ ... + .+.+
T Consensus 76 ~~-~~~Vi~~g~g~~~~-~~----l---~~~~~vi~l~~~~-e~~~~Rl~~r~~~~r~------------~~~-~-~~~~ 131 (168)
T 1zuh_A 76 LK-TPHVISTGGGIVMH-EN----L---KGLGTTFYLKMDF-ETLIKRLNQKEREKRP------------LLN-N-LTQA 131 (168)
T ss_dssp CS-SCCEEECCGGGGGC-GG----G---TTSEEEEEEECCH-HHHHHHHCC--------------------CC-T-THHH
T ss_pred cC-CCEEEECCCCEech-hH----H---hcCCEEEEEECCH-HHHHHHHhccCCCCCC------------Ccc-C-HHHH
Confidence 33 34 55532111001 11 1 1133678888766 58999998873 221 011 1 3445
Q ss_pred HHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 157 ERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
...+..+.+. |... ..++||+++ ++++++++|.+.+
T Consensus 132 ~~~~~~r~~~--~~~~--a~~~Id~~~--~~e~~~~~I~~~l 167 (168)
T 1zuh_A 132 KELFEKRQAL--YEKN--ASFIIDARG--GLNNSLKQVLQFI 167 (168)
T ss_dssp HHHHHHHHHH--HHHT--CSEEEEGGG--CHHHHHHHHHHC-
T ss_pred HHHHHHHHHH--HHHH--CCEEEECCC--CHHHHHHHHHHHh
Confidence 5554443221 1111 458999999 9999999998765
No 41
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.70 E-value=1.1e-16 Score=115.12 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=88.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|++.+|++++++|.+++...+... ...+. ..+...+..+...+...+..
T Consensus 9 i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~~~---------------~~~~~-~~g~~~~~~~~~~~~~~l~~ 72 (175)
T 1via_A 9 FIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKV---------------SEIFE-QKRENFFREQEQKMADFFSS 72 (175)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTSCH---------------HHHHH-HHCHHHHHHHHHHHHHHHTT
T ss_pred EEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCCCH---------------HHHHH-HcCHHHHHHHHHHHHHHHHc
Confidence 579999999999999999999999999999765432100 00000 00001111111112222344
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcC--CCCCCCccCCCCCCCCCCCCCHHHHHH
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRG--NEGGCGVVGDDRPSSWHKPSTWRDLER 158 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~--~~~~~~~~~~~~~~~~~~~~~~e~~~~ 158 (203)
...+|++.......... ....+ .+|+|.+++ +++.+|+..|. ..+ .....+.+..
T Consensus 73 ~~~~vi~~g~~~~~~~~-----l~~~~---~~i~l~~~~-e~~~~R~~~r~~~~r~--------------~~~~~~~i~~ 129 (175)
T 1via_A 73 CEKACIATGGGFVNVSN-----LEKAG---FCIYLKADF-EYLKKRLDKDEISKRP--------------LFYDEIKAKK 129 (175)
T ss_dssp CCSEEEECCTTGGGSTT-----GGGGC---EEEEEECCH-HHHTTCCCGGGTTTSC--------------TTCCHHHHHH
T ss_pred cCCEEEECCCCEehhhH-----HhcCC---EEEEEeCCH-HHHHHHHhcccCCCCC--------------CcccHHHHHH
Confidence 45566664211110011 11222 678888765 58999998773 222 0112555555
Q ss_pred HhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 159 LLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.++.+.+ ++.. ...++||+++ .++++++++|++.+..
T Consensus 130 ~~~~r~~---~y~~-~~~~~Idt~~-~~~eev~~~I~~~l~~ 166 (175)
T 1via_A 130 LYNERLS---KYEQ-KANFILNIEN-KNIDELLSEIKKVIKE 166 (175)
T ss_dssp HHHHHHH---HHHH-HCSEEEECTT-CCHHHHHHHHHHHHC-
T ss_pred HHHHHHH---HHHh-cCCEEEECCC-CCHHHHHHHHHHHHHh
Confidence 5544332 1111 1459999996 6999999999998864
No 42
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.69 E-value=9.8e-17 Score=118.30 Aligned_cols=167 Identities=20% Similarity=0.237 Sum_probs=92.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhh-----hhhhhh-ccCCCccc---cc---hHHH-----HHhhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLS-----LQQTLQ-KTTPHHQH---AT---SAAA-----AASSLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~-----~~~~~~-~~~~~~~~---~~---~~~~-----~~~~~~~ 63 (203)
|+|+|||||||+++.|++ +|++++++|++.+.+.. +..... .+...... .. .... ....++.
T Consensus 7 l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~~~l~ 85 (206)
T 1jjv_A 7 LTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNHDEDKLWLN 85 (206)
T ss_dssp EECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCCHHHHHHHH
Confidence 589999999999999996 99999999999765321 000000 01110000 00 0000 0011111
Q ss_pred hhhHHHHHHHHHHHhh--CCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCC
Q 039424 64 DLSYDVIWKIASTQLK--LGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGD 141 (203)
Q Consensus 64 ~~~~~~l~~~~~~~l~--~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~ 141 (203)
....+.+...+...+. .+..+|+|++...... +...+ + .+|++.+++ +++.+|+..|.+.
T Consensus 86 ~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~---~~~~~---d---~vi~l~~~~-e~~~~Rl~~R~~~-------- 147 (206)
T 1jjv_A 86 NLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENK---LTALC---D---RILVVDVSP-QTQLARSAQRDNN-------- 147 (206)
T ss_dssp HHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTT---CGGGC---S---EEEEEECCH-HHHHHHHC-------------
T ss_pred hccCHHHHHHHHHHHHhcCCCEEEEEechhhhcC---cHhhC---C---EEEEEECCH-HHHHHHHHHcCCC--------
Confidence 2222222222323332 3557899987654332 11111 2 578888765 5899999988532
Q ss_pred CCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChH----HHHHHHHHHHhc
Q 039424 142 DRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQ----ELVSNVIEFILH 200 (203)
Q Consensus 142 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----e~~~~i~~~i~~ 200 (203)
+.+.+.++++.+.+..+.+.. ++++|||++ +++ ++.++|.+.+..
T Consensus 148 ----------~~e~~~~r~~~q~~~~~~~~~--ad~vIdn~~--~~~~~~~~~~~~i~~~~~~ 196 (206)
T 1jjv_A 148 ----------NFEQIQRIMNSQVSQQERLKW--ADDVINNDA--ELAQNLPHLQQKVLELHQF 196 (206)
T ss_dssp ----------CHHHHHHHHHHSCCHHHHHHH--CSEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHhcCChHHHHHh--CCEEEECCC--CccccHHHHHHHHHHHHHH
Confidence 456777777754332233333 458999999 999 999999887754
No 43
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.69 E-value=2.5e-16 Score=112.91 Aligned_cols=160 Identities=16% Similarity=0.149 Sum_probs=82.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+++.|+..++++++++|.+.+...+. .. ..... ..++..+......+...+..
T Consensus 9 l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~~--------~i-------~~i~~-~~g~~~~~~~~~~~l~~l~~ 72 (173)
T 1kag_A 9 LVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGA--------DV-------GWVFD-LEGEEGFRDREEKVINELTE 72 (173)
T ss_dssp EECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTS--------CH-------HHHHH-HHHHHHHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhCc--------CH-------HHHHH-HHhHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999986543210 00 00000 00001111111111122233
Q ss_pred CCcEEEeC---CCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCC-HHHH
Q 039424 81 GVSVVVDS---PLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPST-WRDL 156 (203)
Q Consensus 81 ~~~vIid~---~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~-~e~~ 156 (203)
..++++.. .......++ +....+ .++++.+++ +++.+|+..|..++ .. ...+. .+.+
T Consensus 73 ~~~~v~~~~~~~~~~~~~~~----~l~~~~---~~i~l~~~~-~~l~~R~~~r~~r~----~~-------~~~~~~~~~~ 133 (173)
T 1kag_A 73 KQGIVLATGGGSVKSRETRN----RLSARG---VVVYLETTI-EKQLARTQRDKKRP----LL-------HVETPPREVL 133 (173)
T ss_dssp SSSEEEECCTTGGGSHHHHH----HHHHHS---EEEECCCCH-HHHHSCC------C----CS-------SSSCCCHHHH
T ss_pred CCCeEEECCCeEEecHHHHH----HHHhCC---EEEEEeCCH-HHHHHHHhCCCCCC----CC-------CCCCchHHHH
Confidence 44566653 222222222 233334 578888766 48999998875433 00 01122 5666
Q ss_pred HHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 157 ERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
...+..+.+. |... +.++|||++ .++++++++|.+.+..
T Consensus 134 ~~~~~~r~~~--~~~~--a~~~id~~~-~~~~~~~~~i~~~l~~ 172 (173)
T 1kag_A 134 EALANERNPL--YEEI--ADVTIRTDD-QSAKVVANQIIHMLES 172 (173)
T ss_dssp HHHHHHHHHH--HHHH--CSEEC------CHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHH--HHhh--CCEEEECCC-CCHHHHHHHHHHHHHh
Confidence 6555443321 1111 469999995 5999999999998864
No 44
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.68 E-value=3.3e-16 Score=116.00 Aligned_cols=160 Identities=18% Similarity=0.209 Sum_probs=95.6
Q ss_pred CCCCCCCChHHHHHHHHHhCC------CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK------IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIA 74 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~------~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (203)
|+|+|||||||+++.|++.++ +.+++.|.++..+.. . ... . ..... ..+..+...+
T Consensus 30 ~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~---~----~~~-~-----~~~r~-----~~~~~~~~~~ 91 (211)
T 1m7g_A 30 LTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNK---D----LGF-S-----EADRN-----ENIRRIAEVA 91 (211)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTT---T----CCS-S-----HHHHH-----HHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhcc---c----cCC-C-----HHHHH-----HHHHHHHHHH
Confidence 579999999999999999886 778888887643321 0 000 0 00001 1122233445
Q ss_pred HHHhhCCCcEEEeCCCCchHhHHHHHHHHH------hhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCC
Q 039424 75 STQLKLGVSVVVDSPLSRRAHLEKLVKLAG------EMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWH 148 (203)
Q Consensus 75 ~~~l~~~~~vIid~~~~~~~~~~~~~~~~~------~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~ 148 (203)
...+..|..||+|........++.+..+.. ..+.|..+|+|+++++ ++.+|+ .| +
T Consensus 92 ~~~l~~g~~VI~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e-~~~~R~-~r---~-------------- 152 (211)
T 1m7g_A 92 KLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVE-VAEQRD-PK---G-------------- 152 (211)
T ss_dssp HHHHHTTCEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHH-HHHTSC-TT---C--------------
T ss_pred HHHHHCCCEEEEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHH-HHHHhh-hH---H--------------
Confidence 566778888999965333455666666654 3356788999998765 788884 11 0
Q ss_pred CCCCHHHHHH-HhhhhcCCCC-CCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 149 KPSTWRDLER-LLEGYCGCTE-YDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 149 ~~~~~e~~~~-~~~~~~~~~~-~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
-...... ....+..... |.......++||+++ +++++++++|.+.+...
T Consensus 153 ---~~~~~r~~~~~~~~~~~~~y~~~~~~~~~IDt~~-~s~eev~~~I~~~l~~~ 203 (211)
T 1m7g_A 153 ---LYKKAREGVIKEFTGISAPYEAPANPEVHVKNYE-LPVQDAVKQIIDYLDTK 203 (211)
T ss_dssp ---HHHHHHHTSSSSCBTTTBCCCCCSSCSEEEECSS-SCHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHhcchhhhhhhhhhccCCCCCeEEEECCC-CCHHHHHHHHHHHHHHc
Confidence 0000000 0000011111 222223458999998 89999999999998753
No 45
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.67 E-value=2.5e-16 Score=112.33 Aligned_cols=157 Identities=15% Similarity=0.091 Sum_probs=86.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|++.+|++++++|.+.+...+. .. ..... ......+..+...+...+..
T Consensus 5 l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~--------~~-------~~~~~-~~~~~~~~~~~~~~l~~l~~ 68 (168)
T 2pt5_A 5 LIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGL--------SI-------PQIFE-KKGEAYFRKLEFEVLKDLSE 68 (168)
T ss_dssp EESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTS--------CH-------HHHHH-HSCHHHHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCC--------CH-------HHHHH-HhChHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999997654320 00 00000 00011111122222233443
Q ss_pred CCcEEEe-C--CCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH
Q 039424 81 GVSVVVD-S--PLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE 157 (203)
Q Consensus 81 ~~~vIid-~--~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~ 157 (203)
...+|++ + +.....+++.+ ... ..+|+|.+++ +++.+|+..|...+ .. . +..+.+.
T Consensus 69 ~~~~Vi~~g~~~~~~~~~~~~l----~~~---~~~i~l~~~~-e~~~~R~~~r~~r~----~~--------~-~~~~~i~ 127 (168)
T 2pt5_A 69 KENVVISTGGGLGANEEALNFM----KSR---GTTVFIDIPF-EVFLERCKDSKERP----LL--------K-RPLDEIK 127 (168)
T ss_dssp SSSEEEECCHHHHTCHHHHHHH----HTT---SEEEEEECCH-HHHHHHCBCTTCCB----GG--------G-SCGGGTH
T ss_pred cCCeEEECCCCEeCCHHHHHHH----HcC---CEEEEEECCH-HHHHHHHhCCCCCC----CC--------c-chHHHHH
Confidence 3445555 3 22333343332 211 2678888765 58999998875322 00 0 1122333
Q ss_pred HHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 158 RLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
.++..+.+ .+.. ..++| ++. .+++++.++|.+.+...
T Consensus 128 ~~~~~~~~---~~~~--~~~~i-~~~-~~~~~~~~~i~~~l~~~ 164 (168)
T 2pt5_A 128 NLFEERRK---IYSK--ADIKV-KGE-KPPEEVVKEILLSLEGN 164 (168)
T ss_dssp HHHHHHHH---HHTT--SSEEE-ECS-SCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHH---HHHh--CCEEE-CCC-CCHHHHHHHHHHHHHhc
Confidence 33332211 1222 34666 554 39999999999988754
No 46
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.67 E-value=4.8e-16 Score=126.19 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=93.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+|+.|++.+++.+|+.|.+.. +..+...+...+..
T Consensus 263 l~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~----------------------------------~~~~~~~~~~~l~~ 308 (416)
T 3zvl_A 263 AVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGS----------------------------------WQRCVSSCQAALRQ 308 (416)
T ss_dssp EESCTTSSHHHHHHHHTGGGTCEECCGGGSCS----------------------------------HHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHhcCcEEEccchHHH----------------------------------HHHHHHHHHHHHhc
Confidence 57999999999999999999999999998721 11233345566778
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHh
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLL 160 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 160 (203)
|..||+|+++.....+..+.++++..+.++.+|+|.++. +++.+|+..|...+. .......+.+.+..
T Consensus 309 g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~-e~l~~R~~~R~~~~~-----------~~~~~~~~~~~~~~ 376 (416)
T 3zvl_A 309 GKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATI-EQARHNNRFREMTDP-----------SHAPVSDMVMFSYR 376 (416)
T ss_dssp TCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCH-HHHHHHHHHHHHHCT-----------TCCCCCHHHHHHHH
T ss_pred CCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCH-HHHHHHHHhhcccCC-----------CcCCCCHHHHHHHH
Confidence 999999999888888888888888889999999998765 699999999865320 01123556677777
Q ss_pred hhhcCCCC
Q 039424 161 EGYCGCTE 168 (203)
Q Consensus 161 ~~~~~~~~ 168 (203)
+.++++..
T Consensus 377 ~~~e~P~~ 384 (416)
T 3zvl_A 377 KQFEPPTL 384 (416)
T ss_dssp HHCCCCCG
T ss_pred HhcCCCCc
Confidence 77765543
No 47
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.66 E-value=5.8e-16 Score=113.76 Aligned_cols=155 Identities=17% Similarity=0.168 Sum_probs=96.9
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCc--eechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIP--LIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~--~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|+|||||||+++.|+..+ |.. +++.|+++..+.. . .+.. ..... ..+..+.....
T Consensus 30 l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~---~----~~~~------~~~~~-----~~~~~~~~~~~ 91 (200)
T 3uie_A 30 VTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNR---D----LSFK------AEDRA-----ENIRRVGEVAK 91 (200)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT---T----CCSS------HHHHH-----HHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhc---c----cCcC------hHHHH-----HHHHHHHHHHH
Confidence 57999999999999999988 666 8999988654321 0 0000 01111 11122233344
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHH------HhcCCCCCCCccCCCCCCCCCC
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRL------EGRGNEGGCGVVGDDRPSSWHK 149 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~------~~R~~~~~~~~~~~~~~~~~~~ 149 (203)
.....+..+|+++.......++.++.+.. +.++..|+|.++++ ++.+|+ ..|.++.
T Consensus 92 ~~~~~~~~vi~~~~~~~~~~r~~~~~~~~--~~~~~~v~L~a~~e-~~~~R~~~~l~~~~r~~~~--------------- 153 (200)
T 3uie_A 92 LFADAGIICIASLISPYRTDRDACRSLLP--EGDFVEVFMDVPLS-VCEARDPKGLYKLARAGKI--------------- 153 (200)
T ss_dssp HHHHTTCEEEEECCCCCHHHHHHHHHTSC--TTSEEEEEECCCHH-HHHHHCTTSHHHHHHTTSS---------------
T ss_pred HHHhCCceEEEecCCchHHHHHHHHHhcC--CCCEEEEEEeCCHH-HHHHhcccchHHHHhcCCC---------------
Confidence 44566778888887666677777665443 34677899998765 788886 4454331
Q ss_pred CCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 150 PSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 150 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
..... +. ..|..+..+.++|||++.+++++++++|++.+...
T Consensus 154 -~~~~~----~~-----~~~~~~~~~~~~idt~~~~~~~e~v~~i~~~l~~~ 195 (200)
T 3uie_A 154 -KGFTG----ID-----DPYEPPLNCEISLGREGGTSPIEMAEKVVGYLDNK 195 (200)
T ss_dssp -CSCBT----TT-----BCCCCCSSCSEEECCSSCCCHHHHHHHHHHHHHHH
T ss_pred -CCCCC----CC-----CcCcCCCCCCEEEecCCCCCHHHHHHHHHHHHHHc
Confidence 00000 00 12333334679999986239999999999998754
No 48
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.66 E-value=1.1e-15 Score=114.61 Aligned_cols=177 Identities=13% Similarity=0.117 Sum_probs=94.9
Q ss_pred CCCCCCCChHHHHHHHHHhCC--CceechhhHhhhhhh--hhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK--IPLIDKDDVRDCTLS--LQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAST 76 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~--~~~i~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 76 (203)
|+|+|||||||+++.|++.++ +.++.+......-.+ +...+...... . .....-.+....+..+.+.+..
T Consensus 31 i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~~~-~-----~~~~~ll~~a~r~~~~~~~i~~ 104 (229)
T 4eaq_A 31 FEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDM-D-----IRTEAMLFAASRREHLVLKVIP 104 (229)
T ss_dssp EECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC---C-C-----HHHHHHHHHHHHHHHCCCCCHH
T ss_pred EEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCCCC-C-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999986 455543211110000 01111000000 0 0000000000001111122345
Q ss_pred HhhCCCcEEEe----------CC--CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCC
Q 039424 77 QLKLGVSVVVD----------SP--LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRP 144 (203)
Q Consensus 77 ~l~~~~~vIid----------~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~ 144 (203)
.+..|..||+| +. .....++..+..+......|..+|+|++++ +++.+|+..|++.. +
T Consensus 105 ~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~-e~~~~R~~~R~~~~------d--- 174 (229)
T 4eaq_A 105 ALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSA-EVGRERIIKNSRDQ------N--- 174 (229)
T ss_dssp HHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCH-HHHHHHHHHC--------------
T ss_pred HHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCH-HHHHHHHHhcCCCc------c---
Confidence 56788899999 42 233445555555544444677789999876 58999999986431 0
Q ss_pred CCCCCCCCHHHHHHHhh-hhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 145 SSWHKPSTWRDLERLLE-GYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 145 ~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
..+.....+.+++. .|..+...+. ...++||++. +++++.++|.+.+..
T Consensus 175 ---r~e~~~~~~~~rv~~~y~~l~~~~~--~~~~vIDa~~--s~eev~~~I~~~l~~ 224 (229)
T 4eaq_A 175 ---RLDQEDLKFHEKVIEGYQEIIHNES--QRFKSVNADQ--PLENVVEDTYQTIIK 224 (229)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTTTCT--TTEEEEETTS--CHHHHHHHHHHHHHH
T ss_pred ---chhhhhHHHHHHHHHHHHHHHHhCC--CCEEEEeCCC--CHHHHHHHHHHHHHH
Confidence 01112334444443 3544433332 3578999999 999999999998864
No 49
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.65 E-value=5.7e-16 Score=113.95 Aligned_cols=167 Identities=15% Similarity=0.137 Sum_probs=95.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhh-----hhhhhh-ccCCCcc-ccchHHHHHh----------hhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLS-----LQQTLQ-KTTPHHQ-HATSAAAAAS----------SLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~-----~~~~~~-~~~~~~~-~~~~~~~~~~----------~~~~ 63 (203)
|+|++||||||+++.|++ +|++++++|++.+.... ...... .+..... .......... .++.
T Consensus 6 i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~~~~~~l~ 84 (204)
T 2if2_A 6 LTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDEEKLRKLE 84 (204)
T ss_dssp EEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCHHHHHHHH
Confidence 589999999999999998 99999999999765431 111000 0000000 0000000000 0111
Q ss_pred hhhHHHHHHHHHHHhh--CC-CcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccC
Q 039424 64 DLSYDVIWKIASTQLK--LG-VSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVG 140 (203)
Q Consensus 64 ~~~~~~l~~~~~~~l~--~~-~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~ 140 (203)
......+...+...+. .+ ..+|+|++......+.. . +..+|+|.+++ +++.+|+..|+ .
T Consensus 85 ~l~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~~~~---~------~~~~i~l~~~~-e~~~~Rl~~R~-~------- 146 (204)
T 2if2_A 85 EITHRALYKEIEKITKNLSEDTLFILEASLLVEKGTYK---N------YDKLIVVYAPY-EVCKERAIKRG-M------- 146 (204)
T ss_dssp HHHHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTTCGG---G------SSEEEEECCCH-HHHHHHHHHTC-C-------
T ss_pred HhhCHHHHHHHHHHHHhccCCCEEEEEccccccCCchh---h------CCEEEEEECCH-HHHHHHHHHcC-C-------
Confidence 1111222122222221 23 57999997654332111 1 12678888765 58999999882 2
Q ss_pred CCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 141 DDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 141 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+.+.++++.+.+...+... ..++||++. +++++.++|.+.+..+
T Consensus 147 -----------~~~~~~~~~~~~~~~~~~~~~--ad~vId~~~--~~~~~~~~i~~~l~~~ 192 (204)
T 2if2_A 147 -----------SEEDFERRWKKQMPIEEKVKY--ADYVIDNSG--SIEETYKQVKKVYEEL 192 (204)
T ss_dssp -----------CHHHHHHHHTTSCCHHHHGGG--CSEECCCSS--CHHHHHHHHHHHHHTT
T ss_pred -----------CHHHHHHHHHhCCChhHHHhc--CCEEEECCC--CHHHHHHHHHHHHHHH
Confidence 346677777665432223333 348999998 9999999999988754
No 50
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.65 E-value=5.7e-15 Score=109.38 Aligned_cols=179 Identities=16% Similarity=0.099 Sum_probs=101.2
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCceechhhHhhhhhh--hhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIPLIDKDDVRDCTLS--LQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~~i~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|.|++||||||+++.|++.+ |+.++.+......-.+ +...+...... . .. .....-.+....++.+.+.+.
T Consensus 11 ~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~-~-~~--~~~~~llf~a~R~~~~~~~i~ 86 (213)
T 4edh_A 11 LEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDE-P-MA--ADTELLLMFAARAQHLAGVIR 86 (213)
T ss_dssp EECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSS-C-CC--HHHHHHHHHHHHHHHHHHTHH
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCC-C-CC--HHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999888 4555443211000000 11111111100 0 00 000001111122334455677
Q ss_pred HHhhCCCcEEEeCC------------CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCC
Q 039424 76 TQLKLGVSVVVDSP------------LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDR 143 (203)
Q Consensus 76 ~~l~~~~~vIid~~------------~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~ 143 (203)
..+..|..||+|.. ....++...+...+.....|..+|+|++++ +++.+|+..|+... .+
T Consensus 87 p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~-e~~~~Ri~~R~~~d----r~--- 158 (213)
T 4edh_A 87 PALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPV-EIGLARAAARGRLD----RF--- 158 (213)
T ss_dssp HHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCH-HHHHHHHCCCSSCC----TT---
T ss_pred HHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCH-HHHHHHHHhcCCcC----cc---
Confidence 78889999999972 112245555444443445678899999876 58999999986421 00
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 144 PSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 144 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.....+.+.+..+.|..+...+. ...++||++. +++++.++|.+.+..
T Consensus 159 -----E~~~~~~~~rv~~~y~~l~~~~~--~~~~vIDa~~--s~eeV~~~I~~~l~~ 206 (213)
T 4edh_A 159 -----EQEDRRFFEAVRQTYLQRAAQAP--ERYQVLDAGL--PLAEVQAGLDRLLPN 206 (213)
T ss_dssp -----TTSCHHHHHHHHHHHHHHHHHCT--TTEEEEETTS--CHHHHHHHHHHHHHH
T ss_pred -----cccHHHHHHHHHHHHHHHHHHCC--CcEEEEeCCC--CHHHHHHHHHHHHHH
Confidence 11123444444455554433232 2579999999 999999999988764
No 51
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.64 E-value=1.5e-15 Score=117.29 Aligned_cols=167 Identities=15% Similarity=0.121 Sum_probs=94.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh-h-------hhhhhhc--cCCCccccc--hHHHHH-----hhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL-S-------LQQTLQK--TTPHHQHAT--SAAAAA-----SSLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~-~-------~~~~~~~--~~~~~~~~~--~~~~~~-----~~~~~ 63 (203)
|+|+|||||||+|+.|+ .+|++++++|.+.+.+. + +...+.. ..+.+.... .....+ ..++.
T Consensus 80 I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~~~~~~~l~ 158 (281)
T 2f6r_A 80 LTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGNKKQMKILT 158 (281)
T ss_dssp EEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCCHHHHHHhh
Confidence 58999999999999999 68999999999966532 1 0000000 011110000 000000 11111
Q ss_pred hhhHHHH----HHHHHHHhhC-CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCc
Q 039424 64 DLSYDVI----WKIASTQLKL-GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGV 138 (203)
Q Consensus 64 ~~~~~~l----~~~~~~~l~~-~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~ 138 (203)
....+.+ .+.+...... ...||+|++......+ .. ....+|+|.+++ +++.+|+..|.+.
T Consensus 159 ~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~------~~---~~d~vI~l~a~~-ev~~~Rl~~R~g~----- 223 (281)
T 2f6r_A 159 DIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAGW------QS---MVHEVWTVVIPE-TEAVRRIVERDGL----- 223 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTTG------GG---GCSEEEEEECCH-HHHHHHHHHHHCC-----
T ss_pred cccChHHHHHHHHHHHHHhccCCCEEEEEechhhccch------HH---hCCEEEEEcCCH-HHHHHHHHHcCCC-----
Confidence 1222222 2222222233 3569999975443211 11 112578888765 5899999988532
Q ss_pred cCCCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 139 VGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 139 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+.+.+++..+.+...+... ++++||+++ +++++.++|.+.+..
T Consensus 224 -------------s~e~~~~ri~~q~~~~~~~~~--AD~vIdn~~--s~eel~~~I~~~l~~ 268 (281)
T 2f6r_A 224 -------------SEAAAQSRLQSQMSGQQLVEQ--SNVVLSTLW--ESHVTQSQVEKAWNL 268 (281)
T ss_dssp -------------CHHHHHHHHHTSCCHHHHHHT--CSEEEECSS--CHHHHHHHHHHHHHH
T ss_pred -------------CHHHHHHHHHHcCChHhhHhh--CCEEEECCC--CHHHHHHHHHHHHHH
Confidence 456777777665322222222 458999998 999999999988764
No 52
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.63 E-value=1.5e-15 Score=110.55 Aligned_cols=165 Identities=13% Similarity=0.044 Sum_probs=86.1
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhh-h--hhhHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLL-N--DLSYDVIWK 72 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~l~~ 72 (203)
|+|+|||||||+++.|+++++ +.+++.|++...... ...+ .... ....... . ......+..
T Consensus 6 i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~-~~~~----~~~~------~~~~~~~~~~~~~~~~~~~~ 74 (194)
T 1nks_A 6 VTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATAL-KLGY----AKDR------DEMRKLSVEKQKKLQIDAAK 74 (194)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHH-TTTS----CSSH------HHHTTSCHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHH-hccc----ccch------hhhhcCCHHHHHHHHHHHHH
Confidence 579999999999999999987 788988877543221 0000 0000 0000000 0 011111122
Q ss_pred HHHHHh--hCCCcEEEeCCCCchH--------hHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHh--cCCCCCCCccC
Q 039424 73 IASTQL--KLGVSVVVDSPLSRRA--------HLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEG--RGNEGGCGVVG 140 (203)
Q Consensus 73 ~~~~~l--~~~~~vIid~~~~~~~--------~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~--R~~~~~~~~~~ 140 (203)
.+...+ ..+..||+|+...... ..+.+... .+..+|+|.+++++.+.||+.. |++.+
T Consensus 75 ~i~~~l~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~-----~~~~vi~l~~~~~~~~~rr~~~~~R~~~~------ 143 (194)
T 1nks_A 75 GIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEI-----NPSVIFLLEADPKIILSRQKRDTTRNRND------ 143 (194)
T ss_dssp HHHHHHHHTCSSEEEEEECSEEEETTEEEESSCHHHHHHH-----CCSEEEEEECCHHHHHHHHHHCTTTCCCC------
T ss_pred HHHHHhhccCCCEEEECCchhhccccccccCCCHHHHHhc-----CCCEEEEEeCCHHHHHHHHHhhcccCCCC------
Confidence 344555 6788899998521100 02222221 2446889998876444466877 75411
Q ss_pred CCCCCCCCCCCCHHHHH---HHhhhhcCCCCCCCCCCCeEEE-ecCCCCChHHHHHHHHHHHh
Q 039424 141 DDRPSSWHKPSTWRDLE---RLLEGYCGCTEYDVGDVPKLTV-DTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 141 ~~~~~~~~~~~~~e~~~---~~~~~~~~~~~~~~~~~~~~~i-d~~~~~~~~e~~~~i~~~i~ 199 (203)
....+.+. +....|......+. ....++| |++. ++++++++|.+.+.
T Consensus 144 ---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~I~d~~~--~~e~v~~~I~~~l~ 194 (194)
T 1nks_A 144 ---------YSDESVILETINFARYAATASAVLA-GSTVKVIVNVEG--DPSIAANEIIRSMK 194 (194)
T ss_dssp ---------CCSHHHHHHHHHHHHHHHHHHHHHH-TCEEEEEECCSS--CHHHHHHHHHHHHC
T ss_pred ---------ccCHHHHHHHHHHHHHHHHHHHHhc-CCcEEEEeCCCC--CHHHHHHHHHHHhC
Confidence 01222221 11122221111110 1245788 8877 99999999998763
No 53
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.63 E-value=1.9e-15 Score=114.46 Aligned_cols=161 Identities=13% Similarity=0.114 Sum_probs=90.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh-hhhhhhhccCCCccccchHHHHHhhhhhhhhHHHH-HHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL-SLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVI-WKIASTQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~l 78 (203)
|+|+|||||||+++.|++.+|+.++++|.+++... +. .. ...+ ...++..+..+ .+.+....
T Consensus 53 l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~--------~i-------~~i~-~~~ge~~fr~~e~~~l~~l~ 116 (250)
T 3nwj_A 53 LVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGT--------SV-------AEIF-EHFGESVFREKETEALKKLS 116 (250)
T ss_dssp EECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTS--------CH-------HHHH-HHHCHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCc--------cH-------HHHH-HHhCcHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999976543 10 00 1111 11111222222 22333434
Q ss_pred hC-CCcEEEeCC--CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcC--CCCCCCccCCCCCCCCCCCCC-
Q 039424 79 KL-GVSVVVDSP--LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRG--NEGGCGVVGDDRPSSWHKPST- 152 (203)
Q Consensus 79 ~~-~~~vIid~~--~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~--~~~~~~~~~~~~~~~~~~~~~- 152 (203)
.. ...||.+|. ......+..+ . .+ .+|||++++ +++.+|+..+. .+| +... ....+.
T Consensus 117 ~~~~~~Via~GgG~v~~~~~~~~l----~-~~---~vV~L~a~~-e~l~~Rl~~~~~~~Rp----l~~~----~~~~d~~ 179 (250)
T 3nwj_A 117 LMYHQVVVSTGGGAVIRPINWKYM----H-KG---ISIWLDVPL-EALAHRIAAVGTGSRP----LLHD----DESGDTY 179 (250)
T ss_dssp HHCSSEEEECCGGGGGSHHHHHHH----T-TS---EEEEEECCH-HHHHHHHHC------------------------CH
T ss_pred hhcCCcEEecCCCeecCHHHHHHH----h-CC---cEEEEECCH-HHHHHHHhhcCCCCCC----cccC----CCcccch
Confidence 44 445666652 2333333332 2 12 689999876 58999998632 222 0000 000111
Q ss_pred ---HHHHHHHhhhhcCCCCCCCCCCCeEEE------------ecCCCCChHHHHHHHHHHHhc
Q 039424 153 ---WRDLERLLEGYCGCTEYDVGDVPKLTV------------DTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 153 ---~e~~~~~~~~~~~~~~~~~~~~~~~~i------------d~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+.+...++.+.+ .|.. +.++| ||++ +++++++++|++.+..
T Consensus 180 ~~~~~~l~~l~~eR~~---lY~~--ad~vi~~~~~~~~~~~iDTs~-~s~eev~~~I~~~i~~ 236 (250)
T 3nwj_A 180 TAALNRLSTIWDARGE---AYTK--ASARVSLENITLKLGYRSVSD-LTPAEIAIEAFEQVQS 236 (250)
T ss_dssp HHHHHHHHHHHHHHHH---HHTT--SSEEEEHHHHHHHHTCSSGGG-CCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH---HHhh--CCEEEEecccccccccccCCC-CCHHHHHHHHHHHHHH
Confidence 3455555555543 2333 33555 8998 8999999999998864
No 54
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.63 E-value=1.1e-15 Score=113.57 Aligned_cols=167 Identities=20% Similarity=0.194 Sum_probs=93.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh-h----hhhhhhc-c----CCCcccc--chHHHHH-----hhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL-S----LQQTLQK-T----TPHHQHA--TSAAAAA-----SSLLN 63 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~-~----~~~~~~~-~----~~~~~~~--~~~~~~~-----~~~~~ 63 (203)
|+|++||||||+++.|++ +|++++++|.+.+.+. + ....... + .+.+... ......+ ..++.
T Consensus 9 i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~~~~~l~ 87 (218)
T 1vht_A 9 LTGGIGSGKSTVANAFAD-LGINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPEEKNWLN 87 (218)
T ss_dssp EECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHHHHHHHH
Confidence 589999999999999997 9999999999976532 1 0100000 0 0000000 0000000 01111
Q ss_pred hhhHHHHHHHHHHHhh--CCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCC
Q 039424 64 DLSYDVIWKIASTQLK--LGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGD 141 (203)
Q Consensus 64 ~~~~~~l~~~~~~~l~--~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~ 141 (203)
....+.+...+...+. .+..+|+|++...... + .. .+..+|+|.+++ +++.+|+..|...
T Consensus 88 ~~~~p~v~~~~~~~~~~~~~~~vi~~~~~l~~~~---~---~~---~~d~vi~l~~~~-e~~~~Rl~~R~~~-------- 149 (218)
T 1vht_A 88 ALLHPLIQQETQHQIQQATSPYVLWVVPLLVENS---L---YK---KANRVLVVDVSP-ETQLKRTMQRDDV-------- 149 (218)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSEEEEECTTTTTTT---G---GG---GCSEEEEEECCH-HHHHHHHHHHHTC--------
T ss_pred HhHCHHHHHHHHHHHHhcCCCEEEEEeeeeeccC---c---cc---cCCEEEEEECCH-HHHHHHHHHcCCC--------
Confidence 1222222222222222 3445777876544321 1 11 122678888765 5899999988532
Q ss_pred CCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 142 DRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 142 ~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+.+.+++..+.+...+... .+++||+++ +++++.++|.+.+..
T Consensus 150 ----------~~~~~~~~~~~~~~~~~~~~~--ad~vId~~~--~~~~~~~~I~~~l~~ 194 (218)
T 1vht_A 150 ----------TREHVEQILAAQATREARLAV--ADDVIDNNG--APDAIASDVARLHAH 194 (218)
T ss_dssp ----------CHHHHHHHHHHSCCHHHHHHH--CSEEEECSS--CTTSHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHhcCChHHHHHh--CCEEEECCC--CHHHHHHHHHHHHHH
Confidence 456677776654322222222 348999999 999999999888764
No 55
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.63 E-value=5.3e-15 Score=106.64 Aligned_cols=160 Identities=17% Similarity=0.221 Sum_probs=84.6
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCcee--chhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIPLI--DKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~~i--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|++||||||+++.|++.+ |++++ +.+.+++.+.. ..... .......+ +.+....
T Consensus 10 l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~---------~~~~~----~~~~~~~~-----~~~~~~~- 70 (179)
T 2pez_A 10 LTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK---------NLGFS----PEDREENV-----RRIAEVA- 70 (179)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT---------TCCSS----HHHHHHHH-----HHHHHHH-
T ss_pred EECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhh---------ccccc----cccHHHHH-----HHHHHHH-
Confidence 58999999999999999987 88877 55555432210 00000 00001111 1111111
Q ss_pred HHh-hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHH
Q 039424 76 TQL-KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWR 154 (203)
Q Consensus 76 ~~l-~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e 154 (203)
..+ ..+..++.+........++.+..+....+.++.+|+|++++ +++.+|+..|... +
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~-e~~~~R~~~~~~~--------------------~ 129 (179)
T 2pez_A 71 KLFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPL-HVCEQRDVKGLYK--------------------K 129 (179)
T ss_dssp HHHHHTTCEEEEECCCCCHHHHHHHHHHHHHTTCCEEEEEEECCH-HHHHHHCTTSHHH--------------------H
T ss_pred HHHHHCCCEEEEecCCcchHHHHHHHHHhhccCCCeEEEEEeCCH-HHHHHHHhhhhHH--------------------H
Confidence 112 34533333332222223344445555556788899999876 5899997543100 0
Q ss_pred HHHHHhhhhcCC-CCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 155 DLERLLEGYCGC-TEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 155 ~~~~~~~~~~~~-~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
.-..++..+... ..+.....++++||+++ .+++++.++|.+.+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~ad~vid~~~-~~~~~~~~~i~~~l~~~ 176 (179)
T 2pez_A 130 ARAGEIKGFTGIDSEYEKPEAPELVLKTDS-CDVNDCVQQVVELLQER 176 (179)
T ss_dssp HHTTSSCSCBTTTBCCCCCSSCSEEEETTT-SCHHHHHHHHHHHHHHT
T ss_pred HhcccccccccCCccccCCCCCcEEEECCC-CCHHHHHHHHHHHHHHh
Confidence 000011111101 11222233558999987 69999999999988754
No 56
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.63 E-value=1.7e-15 Score=113.04 Aligned_cols=176 Identities=15% Similarity=0.074 Sum_probs=95.9
Q ss_pred CCCCCCCChHHHHHHHHHhC-------CCceechhhHhhhhhh--hhhhhhccCCCccccchHHHHHhhhhhhhhHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL-------KIPLIDKDDVRDCTLS--LQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIW 71 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-------~~~~i~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 71 (203)
|.|++||||||+++.|++.+ |+.++.+......-.+ ++..+... .. . .....-.+....++.+.
T Consensus 30 ~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~-~~-~-----~~~~~llf~a~R~~~~~ 102 (227)
T 3v9p_A 30 FEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQ-PM-D-----LETEALLMFAGRREHLA 102 (227)
T ss_dssp EECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHS-CC-C-----HHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcC-CC-C-----HHHHHHHHHHHHHHHHH
Confidence 47999999999999999988 4333322110000000 11111100 00 0 00000011111223344
Q ss_pred HHHHHHhhCCCcEEEeCC------------CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCcc
Q 039424 72 KIASTQLKLGVSVVVDSP------------LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVV 139 (203)
Q Consensus 72 ~~~~~~l~~~~~vIid~~------------~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~ 139 (203)
+.+...+..|..||+|.. ....++...+...+.....|..+|+|+++++ ++.+|+..|+...
T Consensus 103 ~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e-~~~~Ri~~R~~~d----- 176 (227)
T 3v9p_A 103 LVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQ-IASARRGAVRMPD----- 176 (227)
T ss_dssp HTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSS-CGGGTTTCCCCC------
T ss_pred HHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHH-HHHHHHHhccCcc-----
Confidence 567777889999999972 1223455554444433456788999999885 8999999885321
Q ss_pred CCCCCCCCCCCC-CHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 140 GDDRPSSWHKPS-TWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 140 ~~~~~~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
.... ..+.+.+..+.|..+...+. ...++||++. +++++.++|.+.+..+
T Consensus 177 --------r~E~~~~ef~~rv~~~Y~~la~~~~--~~~~vIDa~~--s~eeV~~~I~~~l~~l 227 (227)
T 3v9p_A 177 --------KFESESDAFFARTRAEYLRRAQEAP--HRFVIVDSSE--PIAQIRKQLEGVLAAL 227 (227)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHCT--TTEEEEETTS--CHHHHHHHHHHHHHHC
T ss_pred --------chhhhhHHHHHHHHHHHHHHHHHhc--CCEEEEeCCC--CHHHHHHHHHHHHHhC
Confidence 0111 12333444445544332222 2579999999 9999999999988754
No 57
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.62 E-value=5.9e-15 Score=124.21 Aligned_cols=157 Identities=17% Similarity=0.225 Sum_probs=96.6
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCceech--hhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIPLIDK--DDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~~i~~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|+|||||||+|+.|++.+ |+++++. |.++..+.. ...+. ... +...++.+.+.+.
T Consensus 57 LtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~--------~~~fs-----~~d-----ree~~r~i~eva~ 118 (630)
T 1x6v_B 57 LTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK--------NLGFS-----PED-----REENVRRIAEVAK 118 (630)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTT--------TCCSS-----HHH-----HHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCc--------cccCC-----hhh-----hHHHHHHHHHHHH
Confidence 58999999999999999998 8887655 444432210 00000 000 0111223344444
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhc----CCCCCCCccCCCCCCCCCCCC
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGR----GNEGGCGVVGDDRPSSWHKPS 151 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R----~~~~~~~~~~~~~~~~~~~~~ 151 (203)
..+..|..||.|........++.++.++...+.++.+|+|++++ +++.+|+..+ .+..
T Consensus 119 ~~l~~G~iVI~d~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~-Evl~~Rl~r~ly~~aR~~----------------- 180 (630)
T 1x6v_B 119 LFADAGLVCITSFISPYTQDRNNARQIHEGASLPFFEVFVDAPL-HVCEQRDVKGLYKKARAG----------------- 180 (630)
T ss_dssp HHHHTTCEEEEECCCCCHHHHHHHHHHHHTTTCCEEEEEEECCH-HHHHHHCTTSHHHHHTTC-----------------
T ss_pred HHHhCCCEEEEeCchhhHHHHHHHHHHHHhCCCCeEEEEEECCH-HHHHHHhccccchhhhhh-----------------
Confidence 55677887888854444455677777777667889999999876 4899997621 1110
Q ss_pred CHHHHHHHhhhhcCC-CCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 152 TWRDLERLLEGYCGC-TEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 152 ~~e~~~~~~~~~~~~-~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
.... +... ..|.....+.++|||++ .++++++++|++.+...
T Consensus 181 ~~~~-------~~~~~~~Ye~p~~~dlvIDts~-~s~eevv~~Il~~L~~~ 223 (630)
T 1x6v_B 181 EIKG-------FTGIDSEYEKPEAPELVLKTDS-CDVNDCVQQVVELLQER 223 (630)
T ss_dssp -----------CBTTTBCCCCCSSCSEEEETTS-SCHHHHHHHHHHHHHHT
T ss_pred hHHH-------HHHhhhhhcccCCCcEEEECCC-CCHHHHHHHHHHHHHhc
Confidence 0001 1111 12332233569999997 69999999999998653
No 58
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.62 E-value=9.3e-15 Score=107.64 Aligned_cols=171 Identities=15% Similarity=0.139 Sum_probs=93.4
Q ss_pred CCCCCCCChHHHHHHHHHhC--CCceechh--------hHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL--KIPLIDKD--------DVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVI 70 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~--~~~~i~~d--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 70 (203)
|.|++||||||+++.|++.| |+.++-+. ...+.+. ....... .....-.+.....+.+
T Consensus 7 ~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l------~~~~~~~------~~~~~lLf~a~R~~~~ 74 (205)
T 4hlc_A 7 FEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIV------LEGNDMD------IRTEAMLFAASRREHL 74 (205)
T ss_dssp EECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHH------HSSCCCC------HHHHHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHH------hcccCCC------HHHHHHHHHHHHHHHH
Confidence 46999999999999999988 45544321 1111111 1111110 0000001111112335
Q ss_pred HHHHHHHhhCCCcEEEeCC------------CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCc
Q 039424 71 WKIASTQLKLGVSVVVDSP------------LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGV 138 (203)
Q Consensus 71 ~~~~~~~l~~~~~vIid~~------------~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~ 138 (203)
.+.+...+..|..||+|.. ....++...+...+...-.|..+|+|++++ +++.+|+..|+...
T Consensus 75 ~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~-e~~~~Ri~~r~~~~---- 149 (205)
T 4hlc_A 75 VLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSA-EVGRERIIKNSRDQ---- 149 (205)
T ss_dssp HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCH-HHHHHHHHC---------
T ss_pred HHHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCH-HHHHHHHHhcCCcc----
Confidence 5667788899999999972 112234444444443334577899999876 48999998886542
Q ss_pred cCCCCCCCCCCCCCHHHH-HHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 139 VGDDRPSSWHKPSTWRDL-ERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 139 ~~~~~~~~~~~~~~~e~~-~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+ +.......+ .+..+.|..+...+ ....++||++. +++++.++|.+.|..
T Consensus 150 --d------r~e~~~~~f~~~v~~~Y~~l~~~~--~~~~~~IDa~~--~~e~V~~~i~~~i~~ 200 (205)
T 4hlc_A 150 --N------RLDQEDLKFHEKVIEGYQEIIHNE--SQRFKSVNADQ--PLENVVEDTYQTIIK 200 (205)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHSC--CTTEEEEETTS--CHHHHHHHHHHHHHH
T ss_pred --c------chhccCHHHHHHHHHHHHHHHHhC--CCCEEEEECCC--CHHHHHHHHHHHHHH
Confidence 0 000111123 33333443322222 22578999999 999999999887753
No 59
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=99.62 E-value=1.9e-14 Score=105.34 Aligned_cols=167 Identities=19% Similarity=0.137 Sum_probs=93.9
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCceechh-----hHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIPLIDKD-----DVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWK 72 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~~i~~d-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (203)
|.|+.||||||+++.|++.| |..++-+. .+.+.+.. .+..... . ... ...+-.........
T Consensus 5 ~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~---~l~~~~~--~-----~~~-~~ll~~a~r~~~~~ 73 (197)
T 3hjn_A 5 FEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRK---ILLEEEV--T-----PKA-ELFLFLASRNLLVT 73 (197)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHH---HHHHSCC--C-----HHH-HHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHH---HhhcccC--C-----hHH-HHHHHHHHHHHHHH
Confidence 46999999999999999887 66665432 11111110 0000000 0 000 00111111222345
Q ss_pred HHHHHhhCCCcEEEeCC------------CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccC
Q 039424 73 IASTQLKLGVSVVVDSP------------LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVG 140 (203)
Q Consensus 73 ~~~~~l~~~~~vIid~~------------~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~ 140 (203)
.+...+..|..||+|.. .....+...+.......-.|..+++|+.+++ ++.+|...|.+.
T Consensus 74 ~I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e-~~~~R~~~~dr~------- 145 (197)
T 3hjn_A 74 EIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVE-TALKRKGELNRF------- 145 (197)
T ss_dssp HHHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHH-HHHHHC---CTT-------
T ss_pred HHHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChH-HHHHhCcCcCcc-------
Confidence 57778899999999972 1122344444444433345778899997765 788886554332
Q ss_pred CCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 141 DDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 141 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+..+.+.+..+.|..+...+.. ..++||++. +++++.++|++.|++
T Consensus 146 ----------e~~ef~~rv~~~y~~la~~~~~--~~~~IDa~~--~~eeV~~~I~~~i~~ 191 (197)
T 3hjn_A 146 ----------EKREFLERVREGYLVLAREHPE--RIVVLDGKR--SIEEIHRDVVREVKR 191 (197)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHCTT--TEEEEETTS--CHHHHHHHHHHHHSC
T ss_pred ----------ccHHHHHHHHHHHHHHHHhCCC--CEEEEcCCC--CHHHHHHHHHHHHHH
Confidence 2344444444445433222222 568999999 999999999999864
No 60
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.61 E-value=1.3e-15 Score=111.00 Aligned_cols=157 Identities=16% Similarity=0.174 Sum_probs=89.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhh--hhhh-hccCCC---c--cccchH-----HHHHhhhhhhhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSL--QQTL-QKTTPH---H--QHATSA-----AAAASSLLNDLSY 67 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~--~~~~-~~~~~~---~--~~~~~~-----~~~~~~~~~~~~~ 67 (203)
|+|++||||||+|+.|++.+|++++++|.+.+.+... +... ..+... + ...... ......++.....
T Consensus 17 ltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~~~~~l~~i~h 96 (192)
T 2grj_A 17 VTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRENLKKLELLVH 96 (192)
T ss_dssp EECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHHHHHHHHhhhC
Confidence 5899999999999999998899999999997775531 1100 001100 0 000000 0011122333344
Q ss_pred HHHHHHHHHHhhC-CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCC
Q 039424 68 DVIWKIASTQLKL-GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSS 146 (203)
Q Consensus 68 ~~l~~~~~~~l~~-~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~ 146 (203)
+.+...+...+.. +..+|+|++...+..+. .. .+ .+|++.+++ ++..+|+..+
T Consensus 97 P~i~~~~~~~~~~~~~~vv~d~pll~e~~~~---~~---~d---~vi~v~a~~-e~r~~Rli~~---------------- 150 (192)
T 2grj_A 97 PLMKKRVQEIINKTSGLIVIEAALLKRMGLD---QL---CD---HVITVVASR-ETILKRNREA---------------- 150 (192)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECTTTTTTTGG---GG---CS---EEEEEECCH-HHHHHHCSSH----------------
T ss_pred HHHHHHHHHHHHHcCCEEEEEEeceeecChH---Hh---CC---EEEEEECCH-HHHHHHHHHh----------------
Confidence 4444444444443 45699999866543211 11 12 468888765 5788887111
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 147 WHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 147 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
.. ... + .+. ...++++|||++ +++++.++|.+.+..+
T Consensus 151 -----q~---~~~---~---~~~--~~~AD~vI~n~~--~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 151 -----DR---RLK---F---QED--IVPQGIVVANNS--TLEDLEKKVEEVMKLV 187 (192)
T ss_dssp -----HH---HHT---T---CTT--CCCCSEEEECSS--CHHHHHHHHHHHHHHH
T ss_pred -----cC---Cch---h---hhH--HhcCCEEEECCC--CHHHHHHHHHHHHHHH
Confidence 00 000 0 111 123569999999 9999999998887653
No 61
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.60 E-value=5.2e-14 Score=104.16 Aligned_cols=177 Identities=15% Similarity=0.155 Sum_probs=99.4
Q ss_pred CCCCCCCChHHHHHHHHHhC---CC-ceechhh-----HhhhhhhhhhhhhccCC-CccccchHHHHHhhhhhhhhHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL---KI-PLIDKDD-----VRDCTLSLQQTLQKTTP-HHQHATSAAAAASSLLNDLSYDVI 70 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~-~~i~~d~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l 70 (203)
|.|++||||||+++.|++.+ |+ .++-+.. +-+. +...+..... ...... .....-.+...-.+.+
T Consensus 8 ~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~---ir~~l~~~~~~~~~~~~--~~~e~lL~~A~R~~~~ 82 (213)
T 4tmk_A 8 IEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEK---LRSLLLDIKSVGDEVIT--DKAEVLMFYAARVQLV 82 (213)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHH---HHHHHHSTTTTTTCCCC--HHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHH---HHHHHhcccccccccCC--hHHHHHHHHHHHHHHH
Confidence 47999999999999999887 44 3222111 1110 1111110000 000000 0000001111223445
Q ss_pred HHHHHHHhhCCCcEEEeCC------------CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCc
Q 039424 71 WKIASTQLKLGVSVVVDSP------------LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGV 138 (203)
Q Consensus 71 ~~~~~~~l~~~~~vIid~~------------~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~ 138 (203)
.+.+...+..|..||+|.. .....|...+.........|..+|+|++++ +++.+|+..|+...
T Consensus 83 ~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~-e~~~~Ri~~R~~~d---- 157 (213)
T 4tmk_A 83 ETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTP-EVGLKRARARGELD---- 157 (213)
T ss_dssp HHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCH-HHHHHHHHHHSSCC----
T ss_pred HHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCH-HHHHHHHHhcCCcc----
Confidence 5667788899999999972 112345555544443334677899999876 58999999996421
Q ss_pred cCCCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 139 VGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 139 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
. ......+.+.+..+.|..+...+ ...++||++. +++++.++|.+.+..
T Consensus 158 r--------~E~~~~~f~~rv~~~y~~la~~~---~~~~vIDa~~--s~eeV~~~I~~~l~~ 206 (213)
T 4tmk_A 158 R--------IEQESFDFFNRTRARYLELAAQD---KSIHTIDATQ--PLEAVMDAIRTTVTH 206 (213)
T ss_dssp T--------TTTSCHHHHHHHHHHHHHHHHTC---TTEEEEETTS--CHHHHHHHHHHHHHH
T ss_pred c--------hhhhHHHHHHHHHHHHHHHHHHC---CcEEEECCCC--CHHHHHHHHHHHHHH
Confidence 0 01123444444444554432221 3678999999 999999999988764
No 62
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.59 E-value=2.1e-15 Score=111.46 Aligned_cols=169 Identities=12% Similarity=0.092 Sum_probs=91.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh------hhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL------SLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIA 74 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (203)
|+|+|||||||+++.|++.++..+++.+.+++... .+...+....... .......+.......+ +.+
T Consensus 15 l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~i 87 (212)
T 2wwf_A 15 FEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMS------NETIHLLFSANRWEHM-NEI 87 (212)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCC------HHHHHHHHHHHHHTTH-HHH
T ss_pred EEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCC------HHHHHHHHHHHHHHHH-HHH
Confidence 58999999999999999999877777654332110 0111111111100 0000000000000111 234
Q ss_pred HHHhhCCCcEEEeCCCCch----Hh-----HHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCC
Q 039424 75 STQLKLGVSVVVDSPLSRR----AH-----LEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPS 145 (203)
Q Consensus 75 ~~~l~~~~~vIid~~~~~~----~~-----~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~ 145 (203)
...+..+..||+|+..... .. .+.+..+......+..+|+|.++++ ++.+|+..|...-
T Consensus 88 ~~~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e-~~~~Rl~~r~~r~----------- 155 (212)
T 2wwf_A 88 KSLLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPN-YAQNRSDYGEEIY----------- 155 (212)
T ss_dssp HHHHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTT-GGGGSTTTTSSTT-----------
T ss_pred HHHHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHH-HHHHhhccCcccc-----------
Confidence 4556678889999853211 00 1121111121234557899998875 7899987542111
Q ss_pred CCCCCCCHHHHHHHh-hhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 146 SWHKPSTWRDLERLL-EGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 146 ~~~~~~~~e~~~~~~-~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+. +.+..++ ..|..... ....++||++. +++++.++|.+.+..
T Consensus 156 -----~~-~~~~~~~~~~~~~~~~----~~~~~~Id~~~--~~~~~~~~i~~~l~~ 199 (212)
T 2wwf_A 156 -----EK-VETQKKIYETYKHFAH----EDYWINIDATR--KIEDIHNDIVKEVTK 199 (212)
T ss_dssp -----CS-HHHHHHHHHHGGGGTT----CTTEEEEECSS--CHHHHHHHHHHHHTT
T ss_pred -----cH-HHHHHHHHHHHHHHhc----cCCEEEEECCC--CHHHHHHHHHHHHHH
Confidence 12 4455555 33433222 23679999998 999999999998864
No 63
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.59 E-value=3.7e-15 Score=108.26 Aligned_cols=34 Identities=21% Similarity=0.314 Sum_probs=30.4
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhHhhhh
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDVRDCT 34 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~~~~~ 34 (203)
|+|+|||||||+++.|+++++ +++++.|++.+..
T Consensus 8 i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~ 46 (192)
T 1kht_A 8 VTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEV 46 (192)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHH
Confidence 579999999999999999998 9999999886653
No 64
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.59 E-value=4.3e-14 Score=104.25 Aligned_cols=177 Identities=15% Similarity=0.113 Sum_probs=90.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc--eechh----hHhhhhhhhhhhhhccCC--CccccchHHHHHhhhhhhhhHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIP--LIDKD----DVRDCTLSLQQTLQKTTP--HHQHATSAAAAASSLLNDLSYDVIWK 72 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~--~i~~d----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~ 72 (203)
|+|+|||||||+|+.|++.++.. ++..+ ...+.... .... ... .....-......+..+.+
T Consensus 9 i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~------~~~~~~~~~-----~~~~~~~~~~~r~~~~~~ 77 (213)
T 2plr_A 9 FEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIK------EAKKKDLLT-----PLTFSLIHATDFSDRYER 77 (213)
T ss_dssp EECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHH------HHTTTSCCC-----HHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHh------ccccccCCC-----HHHHHHHHHHHHHHHHHH
Confidence 57999999999999999998763 54422 22211110 0000 000 000000000001122223
Q ss_pred HHHHHhhCCCcEEEeCCCCchHh--------HHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHH-hcCCCCC--CCccCC
Q 039424 73 IASTQLKLGVSVVVDSPLSRRAH--------LEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLE-GRGNEGG--CGVVGD 141 (203)
Q Consensus 73 ~~~~~l~~~~~vIid~~~~~~~~--------~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~-~R~~~~~--~~~~~~ 141 (203)
.+...+..|..||+|+.+..... .+.+..+......+..+|+|.+++ +++.+|+. .|+.... +| .+
T Consensus 78 ~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~-e~~~~Rl~~~R~~~~~~~~g--~~ 154 (213)
T 2plr_A 78 YILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSP-DIALERIKKSKRKIKPQEAG--AD 154 (213)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCH-HHHHHHHHHTTCCCCTTTTT--TT
T ss_pred HHHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCH-HHHHHHHhcccccccccccc--cc
Confidence 34455677888999985322110 122233332223355688998766 58999998 7752110 00 00
Q ss_pred CCCCCCCCC--CCHHHHHHHhhh-hcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 142 DRPSSWHKP--STWRDLERLLEG-YCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 142 ~~~~~~~~~--~~~e~~~~~~~~-~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+. ..+ +..+.+..++.. |......+ ..++||++. +++++.++|.+.+..
T Consensus 155 ~~~---~~d~~e~~~~~~~r~~~~~~~~~~~~----~~~~Id~~~--~~e~v~~~I~~~l~~ 207 (213)
T 2plr_A 155 IFP---GLSPEEGFLKYQGLITEVYDKLVKDE----NFIVIDGTK--TPKEIQIQIRKFVGE 207 (213)
T ss_dssp TCT---TSCHHHHHHHHHHHHHHHHHHHTTTT----TCEEEETTS--CHHHHHHHHHHHHHH
T ss_pred ccc---ccchhhhHHHHHHHHHHHHHHHHhhC----CEEEEECCC--CHHHHHHHHHHHHHH
Confidence 000 000 111344444433 32221111 568999998 999999999998864
No 65
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.59 E-value=1.4e-14 Score=112.15 Aligned_cols=120 Identities=15% Similarity=0.142 Sum_probs=79.4
Q ss_pred CCCCCCCChHHHHHHHHHhC--CCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASAL--KIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~--~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 78 (203)
|+|+|||||||+++.|++.+ ++.+||.|.++....+....+.. ...+. ..... ..........+...+
T Consensus 38 l~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~-~~~~a-----~~~~~----~~~~~~~~~~v~~~l 107 (287)
T 1gvn_B 38 LGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKL-YEKDV-----VKHVT----PYSNRMTEAIISRLS 107 (287)
T ss_dssp EECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHH-HGGGC-----HHHHH----HHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHH-ccchh-----hhhhh----HHHHHHHHHHHHHHH
Confidence 57999999999999999998 78899999987653321110000 00000 00001 111122334555667
Q ss_pred hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHH----HHHHHhcC
Q 039424 79 KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEW----RRRLEGRG 131 (203)
Q Consensus 79 ~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~----~~R~~~R~ 131 (203)
..|.+||+|+.+....++..+.+.++..|+++.++++.++++ ++ .+|+..|.
T Consensus 108 ~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~-~~~l~~~~Rl~~R~ 163 (287)
T 1gvn_B 108 DQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKI-NSYLGTIERYETMY 163 (287)
T ss_dssp HHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHH-HHHHHHHHHHHHHH
T ss_pred hcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHH-HHHHHHHHHHHHHH
Confidence 789999999988777667777777777788887788887665 77 88887663
No 66
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.58 E-value=1.6e-14 Score=105.86 Aligned_cols=168 Identities=16% Similarity=0.166 Sum_probs=92.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh-hhhhhhhccCCCccc-cchHHHHHh----------hhhhhhhHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL-SLQQTLQKTTPHHQH-ATSAAAAAS----------SLLNDLSYD 68 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~----------~~~~~~~~~ 68 (203)
|+|++||||||+++.|++. |++++++|++.+... +....+....+.... .......+. .++......
T Consensus 13 i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~~l~~~~~~ 91 (203)
T 1uf9_A 13 ITGNIGSGKSTVAALLRSW-GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKALEAVVHP 91 (203)
T ss_dssp EEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHHHHHHHhCh
Confidence 5799999999999999987 999999999976544 211111000000000 000000000 011111111
Q ss_pred HHH-HHHHHHhhC-CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCC
Q 039424 69 VIW-KIASTQLKL-GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSS 146 (203)
Q Consensus 69 ~l~-~~~~~~l~~-~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~ 146 (203)
.+. +.+...... +..||+|++......+ ... +..+|+|++++ +++.+|+..|...
T Consensus 92 ~i~~~~i~~~~~~g~~~vi~d~~~l~~~~~------~~~---~d~~i~l~~~~-e~~~~R~~~R~~~------------- 148 (203)
T 1uf9_A 92 EVRRLLMEELSRLEAPLVFLEIPLLFEKGW------EGR---LHGTLLVAAPL-EERVRRVMARSGL------------- 148 (203)
T ss_dssp HHHHHHHHHHHTCCCSEEEEECTTTTTTTC------GGG---SSEEEEECCCH-HHHHHHHHTTTCC-------------
T ss_pred HHHHHHHHHhhhcCCCEEEEEecceeccCc------hhh---CCEEEEEECCH-HHHHHHHHHcCCC-------------
Confidence 111 122222233 4678999865443211 111 12678888765 5899999887432
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 147 WHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 147 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+.+..+++.+.+...+... .+++||+++ +++++.++|.+.+..+
T Consensus 149 -----~~~~~~~~i~~~~~~~~~~~~--ad~vId~~~--~~~~~~~~i~~~~~~~ 194 (203)
T 1uf9_A 149 -----SREEVLARERAQMPEEEKRKR--ATWVLENTG--SLEDLERALKAVLAEL 194 (203)
T ss_dssp -----TTHHHHHHHTTSCCHHHHHHH--CSEEECCSS--HHHHHHHHHHHHHHSC
T ss_pred -----CHHHHHHHHHHCCChhHHHHh--CCEEEECCC--CHHHHHHHHHHHHHHH
Confidence 234566666553221111122 347999999 9999999999988754
No 67
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.58 E-value=5.6e-14 Score=103.37 Aligned_cols=167 Identities=14% Similarity=0.121 Sum_probs=91.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhh--hhhhhhccCC-----------C------c-ccc-chHHHHH-
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLS--LQQTLQKTTP-----------H------H-QHA-TSAAAAA- 58 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~--~~~~~~~~~~-----------~------~-~~~-~~~~~~~- 58 (203)
|+|++||||||+++.|++.+|+++++.|.+++.... .+..+....+ . + ... .......
T Consensus 7 i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~ 86 (208)
T 3ake_A 7 IDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGEDLTS 86 (208)
T ss_dssp EECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEECGG
T ss_pred EECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCeeCch
Confidence 579999999999999999999999999999776431 1111000000 0 0 000 0000000
Q ss_pred ---hhhhhh-----hhHHHHHHHHHH---HhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHH
Q 039424 59 ---SSLLND-----LSYDVIWKIAST---QLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRL 127 (203)
Q Consensus 59 ---~~~~~~-----~~~~~l~~~~~~---~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~ 127 (203)
...+.. ..++.+.+.+.. .+. ..+|+|+....... .. . ...+|+|.+++ +++.+|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~~~~-------~~--~-~d~~i~l~a~~-e~~~~R~ 153 (208)
T 3ake_A 87 FLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMGTAV-------FP--E-AAHKFYLTASP-EVRAWRR 153 (208)
T ss_dssp GSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCCCCC-------CT--T-CSEEEEEECCH-HHHHHHH
T ss_pred hhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEccceeEEE-------ec--C-CcEEEEEECCH-HHHHHHH
Confidence 000000 011112121111 123 47999997543111 11 1 12578888766 5899999
Q ss_pred HhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHhhhhcCCC-CCCCCCCCeEEEecCCCCChHHHHHHHHHHHh
Q 039424 128 EGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCT-EYDVGDVPKLTVDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 128 ~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~-~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~ 199 (203)
..|... +.+.+.++++.+.... .++......++|||++ .++++++++|.+.+.
T Consensus 154 ~~r~~~------------------~~~~~~~~~~~R~~~~~~~~~~~ad~~~Id~~~-~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 154 ARERPQ------------------AYEEVLRDLLRRDERDKAQSAPAPDALVLDTGG-MTLDEVVAWVLAHIR 207 (208)
T ss_dssp HHTSSS------------------CHHHHHHHHHHHHHTC--CCCCCTTCEEEETTT-SCHHHHHHHHHHHHH
T ss_pred Hhhccc------------------CHHHHHHHHHHHHHHHhhcccCCCCEEEEECCC-CCHHHHHHHHHHHHh
Confidence 887432 3466666665433221 1112222349999997 799999999998874
No 68
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.57 E-value=8.6e-15 Score=122.89 Aligned_cols=159 Identities=16% Similarity=0.228 Sum_probs=97.5
Q ss_pred CCCCCCCChHHHHHHHHHhCC------CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK------IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIA 74 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~------~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (203)
|+|+|||||||+|+.|++.++ +.+++.|.+++.+.+ ...+. ..... .....+...+
T Consensus 401 l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~--------~~~f~-----~~er~-----~~i~ri~~v~ 462 (573)
T 1m8p_A 401 LTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSS--------ELGFT-----REDRH-----TNIQRIAFVA 462 (573)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCT--------TCCCS-----HHHHH-----HHHHHHHHHH
T ss_pred eecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhcc--------ccCCC-----hhHHH-----HHHHHHHHHH
Confidence 589999999999999999975 357788887664321 00000 00000 1112233455
Q ss_pred HHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHH
Q 039424 75 STQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWR 154 (203)
Q Consensus 75 ~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e 154 (203)
...+..|..||+|.....+..++.++++....+ ++.+|+|+++++ ++.+|.. .+ -..
T Consensus 463 ~~~~~~g~~VI~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~~e-v~~~R~~----r~-----------------l~~ 519 (573)
T 1m8p_A 463 TELTRAGAAVIAAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLE-HCEQSDK----RG-----------------IYA 519 (573)
T ss_dssp HHHHHTTCEEEEECCCCCHHHHHHHHHHHHTTS-EEEEEEECCCHH-HHHHHCS----SC-----------------HHH
T ss_pred HHHHhCCCEEEEEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCCHH-HHHHHhc----cc-----------------chh
Confidence 555677888888875555566777766665434 678999998764 8888842 11 000
Q ss_pred HH-HHHhhhhcCC-CCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 155 DL-ERLLEGYCGC-TEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 155 ~~-~~~~~~~~~~-~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
.. ...++.+... ..++.+..+.++|||++ +++++++++|++.+...
T Consensus 520 ~~~~~~i~~~~~~r~~~~~p~~~dl~IDts~-~s~eevv~~Il~~l~~~ 567 (573)
T 1m8p_A 520 AARRGEIKGFTGVDDPYETPEKADLVVDFSK-QSVRSIVHEIILVLESQ 567 (573)
T ss_dssp HHHTTSSSSCBTTTBCCCCCSSCSEEECTTT-SCHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhccccccccCCCCEEEECCC-CCHHHHHHHHHHHHHhc
Confidence 00 0011112111 12443334669999998 79999999999998754
No 69
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.57 E-value=1.6e-14 Score=109.90 Aligned_cols=120 Identities=16% Similarity=0.172 Sum_probs=77.9
Q ss_pred CCCCCCCChHHHHHHHHHhCC--CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASALK--IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~--~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 78 (203)
|+|+|||||||+|+.|++.++ +.+++.|.+++.+..... +. ...+... .. +.. ......+...+...+
T Consensus 37 l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~-i~--~~~g~~~---~~-~~~---~~~~~~~~~~~~~~~ 106 (253)
T 2p5t_B 37 LGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLE-LQ--QEYGKDS---VE-YTK---DFAGKMVESLVTKLS 106 (253)
T ss_dssp EESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHH-HH--TTCSSTT---HH-HHH---HHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHH-HH--HHcCchH---HH-Hhh---HHHHHHHHHHHHHHH
Confidence 579999999999999999986 678899988764322100 00 1111000 00 000 001122234444556
Q ss_pred hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcC
Q 039424 79 KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRG 131 (203)
Q Consensus 79 ~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~ 131 (203)
..|.++|+|+.+....++..+...+...|.++.++++.+++ +++.+|+..|.
T Consensus 107 ~~g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~-e~~~~R~~~R~ 158 (253)
T 2p5t_B 107 SLGYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKP-ELSYLSTLIRY 158 (253)
T ss_dssp HTTCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCH-HHHHHHHHHHH
T ss_pred hcCCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCH-HHHHHHHHHHH
Confidence 67788999998776666677777777788888888888754 68999998874
No 70
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.57 E-value=3.9e-14 Score=106.26 Aligned_cols=179 Identities=17% Similarity=0.145 Sum_probs=92.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec-hhhHhhh---hh--hhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID-KDDVRDC---TL--SLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIA 74 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~-~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (203)
|.|++||||||+++.|++.++...++ ....++. .. .+...+.. .+...... .....-.+....++.+.+.+
T Consensus 32 ~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~-~~~~~~~~--~~~e~lLf~A~R~~~~~~~I 108 (236)
T 3lv8_A 32 IEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKE-EHPGEELQ--DITELLLVYAARVQLVENVI 108 (236)
T ss_dssp EEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHS-CCTTSCCC--HHHHHHHHHHHHHHHHHHTH
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhh-CCCcccCC--HHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999888422222 1111110 00 01111100 01000000 00000011112234455567
Q ss_pred HHHhhCCCcEEEeCC------------CCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCC
Q 039424 75 STQLKLGVSVVVDSP------------LSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDD 142 (203)
Q Consensus 75 ~~~l~~~~~vIid~~------------~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~ 142 (203)
...+..|..||+|.. ....++...+.........|..+|+|++++ +++.+|+..|+... .+
T Consensus 109 ~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~-e~~~~Ri~~R~~~d----r~-- 181 (236)
T 3lv8_A 109 KPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDP-KLGLERARGRGELD----RI-- 181 (236)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCH-HHHHHC-----CCC----TT--
T ss_pred HHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCH-HHHHHHHHhcCCcc----hh--
Confidence 778899999999962 112234444444433334577889999876 58999999886421 00
Q ss_pred CCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 143 RPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 143 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.....+.+.+..+.|..+...+. ..++||++. +++++.++|.+.+..
T Consensus 182 ------E~~~~~~~~rv~~~y~~la~~~~---~~~vIDa~~--sieeV~~~I~~~l~~ 228 (236)
T 3lv8_A 182 ------EKMDISFFERARERYLELANSDD---SVVMIDAAQ--SIEQVTADIRRALQD 228 (236)
T ss_dssp ------TTSCHHHHHHHHHHHHHHHHHCT---TEEEEETTS--CHHHHHHHHHHHHHH
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHCC---CEEEEeCCC--CHHHHHHHHHHHHHH
Confidence 11123334444444543322111 279999999 999999999988764
No 71
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.57 E-value=2.6e-15 Score=125.40 Aligned_cols=160 Identities=21% Similarity=0.195 Sum_probs=96.1
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|+|||||||+|+.|++.++ +.+++.|.+++.+.+ ...+. ......+ ...+...+.
T Consensus 377 l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~--------~~~f~-----~~er~~~-----l~~i~~~~~ 438 (546)
T 2gks_A 377 LTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSR--------GLGFS-----KEDRITN-----ILRVGFVAS 438 (546)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCT--------TCCSS-----HHHHHHH-----HHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcc--------ccccc-----HHHHHHH-----HHHHHHHHH
Confidence 579999999999999999886 478999988765421 11011 0001111 122333445
Q ss_pred HHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHH
Q 039424 76 TQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRD 155 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~ 155 (203)
..+..|..||+|++...+..++.++++... ..+.+|+|.++++ ++.+|+. |+.. . .+..+.
T Consensus 439 ~~l~~G~~VI~d~~~~~~~~r~~~~~~l~~--~d~~vV~L~~~~e-~~~~Rl~-r~~~-------~--------~~~~~~ 499 (546)
T 2gks_A 439 EIVKHNGVVICALVSPYRSARNQVRNMMEE--GKFIEVFVDAPVE-VCEERDV-KGLY-------K--------KAKEGL 499 (546)
T ss_dssp HHHHTTCEEEEECCCCCHHHHHHHHTTSCT--TCEEEEEEECCGG-GHHHHCC-SSHH-------H--------HC----
T ss_pred HHHhCCCEEEEEcCCCCHHHHHHHHHHhhc--CCEEEEEEeCCHH-HHHHHhh-cccc-------c--------cccHHH
Confidence 566788899999876666666665554432 2467899998765 8999975 3210 0 011112
Q ss_pred HHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 156 LERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+......+ ..++....+.++|||++ .++++++++|.+.+...
T Consensus 500 i~~~~~vr---~~~e~~~~adivIDts~-~s~eev~~~I~~~L~~~ 541 (546)
T 2gks_A 500 IKGFTGVD---DPYEPPVAPEVRVDTTK-LTPEESALKILEFLKKE 541 (546)
T ss_dssp --CCBTTT---BCCCCCSSCSEEEETTT-SCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhh---hccccccCCcEEEECCC-CCHHHHHHHHHHHHHHc
Confidence 22111111 12332233569999985 59999999999988753
No 72
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.56 E-value=1.8e-14 Score=105.80 Aligned_cols=169 Identities=11% Similarity=0.114 Sum_probs=89.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh---hhhhh-hhccCCCccccchHHHHHhh---------hhhhhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL---SLQQT-LQKTTPHHQHATSAAAAASS---------LLNDLSY 67 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 67 (203)
|.|++||||||+++.||+++|++++| +++++... ++... +. ..++.. ...... ...+..+
T Consensus 11 i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~~a~~~g~~~~~~~---~~~e~~---~~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T 3fdi_A 11 IGREFGSGGHLVAKKLAEHYNIPLYS-KELLDEVAKDGRYSKEVLE---RFDEKP---MNFAFIPVPAGGTTISLEQDIA 83 (201)
T ss_dssp EEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHHTTCC---------------------------------------CHHH
T ss_pred EeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHHHHHhcCCCHHHHH---HHhhhc---hhHHHHHhccccccccccHHHH
Confidence 46999999999999999999999999 66654322 11100 00 000000 000000 0001112
Q ss_pred HHHHHHHHHHhh-CCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCC
Q 039424 68 DVIWKIASTQLK-LGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSS 146 (203)
Q Consensus 68 ~~l~~~~~~~l~-~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~ 146 (203)
....+.+.+... ...++|++|.... + +... ....+.|||.++++ ++.+|+..+.+.+
T Consensus 84 ~~~~~~i~~la~~~~~~~Vi~Gr~g~--~------vl~~-~~~~~~V~L~A~~e-~r~~R~~~~~~~~------------ 141 (201)
T 3fdi_A 84 IRQFNFIRKKANEEKESFVIVGRCAE--E------ILSD-NPNMISAFILGDKD-TKTKRVMEREGVD------------ 141 (201)
T ss_dssp HHHHHHHHHHHHTSCCCEEEESTTHH--H------HTTT-CTTEEEEEEEECHH-HHHHHHHHHHTCC------------
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCcc--h------hcCC-CCCeEEEEEECCHH-HHHHHHHHHhCCC------------
Confidence 333444444331 4557899885321 1 1111 11247899998765 7888887764321
Q ss_pred CCCCCCHHHHHHHhhhhcC----CCC--CCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 147 WHKPSTWRDLERLLEGYCG----CTE--YDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 147 ~~~~~~~e~~~~~~~~~~~----~~~--~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
..+..+.+.++.+.+.. ... .......+++|||+. ++++++++.|++.++..
T Consensus 142 --~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~-l~~eevv~~I~~~i~~~ 199 (201)
T 3fdi_A 142 --EKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGK-VDVDTATDMIIKYIDSR 199 (201)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESS-SCHHHHHHHHHHHHHTC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCC-CCHHHHHHHHHHHHHHh
Confidence 00112223222222211 111 111233679999999 89999999999998753
No 73
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.56 E-value=9.7e-14 Score=105.44 Aligned_cols=171 Identities=15% Similarity=0.213 Sum_probs=90.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh--hhhhhhhccCCCcc---------c--------------cchHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL--SLQQTLQKTTPHHQ---------H--------------ATSAA 55 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~--~~~~~~~~~~~~~~---------~--------------~~~~~ 55 (203)
|+|++||||||+++.|+++||+.++++|.+++.+. ....++........ . .....
T Consensus 32 I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 111 (252)
T 4e22_A 32 VDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILEGEDVSN 111 (252)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEETTEECTT
T ss_pred EECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEECCeehhH
Confidence 57999999999999999999999999999985532 11111100000000 0 00000
Q ss_pred HHHhhhhhh-----hhHHHHHHHH---HHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHH
Q 039424 56 AAASSLLND-----LSYDVIWKIA---STQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRL 127 (203)
Q Consensus 56 ~~~~~~~~~-----~~~~~l~~~~---~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~ 127 (203)
......... ..+..+.+.+ ...+..+.++|+||.......+ . .. ...|||.++++ ++.+|.
T Consensus 112 ~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~v~-------~--~~-~~~ifl~A~~e-~r~~R~ 180 (252)
T 4e22_A 112 EIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTIVF-------P--DA-PVKIFLDASSQ-ERAHRR 180 (252)
T ss_dssp GGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCCCS-------T--TC-SEEEEEECCHH-HHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceeceeec-------C--CC-CEEEEEECCHH-HHHHHH
Confidence 000000000 0111121222 2234456679999843321110 0 11 26899998776 555554
Q ss_pred Hh----cCCCCCCCccCCCCCCCCCCCCCHHHHHHHhhhhcCCCC-----CCCCCCCeEEEecCCCCChHHHHHHHHHHH
Q 039424 128 EG----RGNEGGCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTE-----YDVGDVPKLTVDTTASVGFQELVSNVIEFI 198 (203)
Q Consensus 128 ~~----R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-----~~~~~~~~~~id~~~~~~~~e~~~~i~~~i 198 (203)
.. |+.. .+.+.+.+.+..++.... .+......++|||++ +++++++++|.+.+
T Consensus 181 ~~~l~~~~~~-----------------~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~-~~~eev~~~I~~~i 242 (252)
T 4e22_A 181 MLQLQERGFN-----------------VNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTS-MSIEQVIEQALAYA 242 (252)
T ss_dssp HHHHHHHTCC-----------------CCHHHHHHHHC------------CCCCCTTEEEEECSS-SCHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-----------------CCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcC-CCHHHHHHHHHHHH
Confidence 43 2222 366777776665543221 111222359999999 89999999999988
Q ss_pred hc
Q 039424 199 LH 200 (203)
Q Consensus 199 ~~ 200 (203)
..
T Consensus 243 ~~ 244 (252)
T 4e22_A 243 QR 244 (252)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 74
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.55 E-value=1.2e-13 Score=103.22 Aligned_cols=171 Identities=18% Similarity=0.175 Sum_probs=92.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh--hhhhhhhccCC------------------Ccccc-----chHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL--SLQQTLQKTTP------------------HHQHA-----TSAA 55 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~--~~~~~~~~~~~------------------~~~~~-----~~~~ 55 (203)
|.|+|||||||+++.|++.+|+.+++.|.+++.+. .++.++..... ..... ....
T Consensus 14 i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g~~v~~ 93 (233)
T 3r20_A 14 VDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAGEDVSS 93 (233)
T ss_dssp EECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETTEECTT
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECCeehhh
Confidence 57999999999999999999999999999977633 22222110000 00000 0000
Q ss_pred HHHhhhh---------hhhhHHHHHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHH
Q 039424 56 AAASSLL---------NDLSYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRR 126 (203)
Q Consensus 56 ~~~~~~~---------~~~~~~~l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R 126 (203)
.+..... .......+.+........+.++|+||....... .. ..+ +-|||.++++ ++.+|
T Consensus 94 ~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V-------~p--da~-lkifl~A~~e-~Ra~R 162 (233)
T 3r20_A 94 EIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVV-------LP--DAD-VKIFLTASAE-ERARR 162 (233)
T ss_dssp GGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCC-------CT--TCS-EEEEEECCHH-HHHHH
T ss_pred hhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEE-------cC--CCC-EEEEEECCHH-HHHHH
Confidence 0000000 011223333333333333267999984221110 00 112 6789998776 55555
Q ss_pred HHh----cCCCCCCCccCCCCCCCCCCCCCHHHHHHHhhhhcCCCC-----CCCCCCCeEEEecCCCCChHHHHHHHHHH
Q 039424 127 LEG----RGNEGGCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTE-----YDVGDVPKLTVDTTASVGFQELVSNVIEF 197 (203)
Q Consensus 127 ~~~----R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~-----~~~~~~~~~~id~~~~~~~~e~~~~i~~~ 197 (203)
... ++.. .+.+++...+..++.... -.......++|||++ ++++++++.|.+.
T Consensus 163 r~~~l~~~~~~-----------------~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~-l~iee~v~~I~~~ 224 (233)
T 3r20_A 163 RNAQNVANGLP-----------------DDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSD-MDQAQVIAHLLDL 224 (233)
T ss_dssp HHHHHHHTTCC-----------------CCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTT-SCHHHHHHHHHHH
T ss_pred HHHHHHhccCC-----------------CCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCC-CCHHHHHHHHHHH
Confidence 443 2222 356666665555442211 112223349999999 9999999999998
Q ss_pred Hhc
Q 039424 198 ILH 200 (203)
Q Consensus 198 i~~ 200 (203)
++.
T Consensus 225 i~~ 227 (233)
T 3r20_A 225 VTA 227 (233)
T ss_dssp C--
T ss_pred HHH
Confidence 864
No 75
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.55 E-value=6.5e-14 Score=102.67 Aligned_cols=77 Identities=16% Similarity=0.132 Sum_probs=46.7
Q ss_pred CeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHhhh-hcCCCCCCCCCCCeEEEecCCCCC
Q 039424 108 AGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLLEG-YCGCTEYDVGDVPKLTVDTTASVG 186 (203)
Q Consensus 108 ~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~id~~~~~~ 186 (203)
.+..+|+|.+++ +++.+|+..|++.. ...... .+..++.. |......+......++||+++ +
T Consensus 124 ~~d~vi~L~~~~-e~~~~Rl~~R~r~~-------------~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~--~ 186 (205)
T 2jaq_A 124 SFDIVIYLRVST-KTAISRIKKRGRSE-------------ELLIGE-EYWETLNKNYEEFYKQNVYDFPFFVVDAEL--D 186 (205)
T ss_dssp CCSEEEEEECCH-HHHHHHHHHHTCHH-------------HHHSCH-HHHHHHHHHHHHHHHHHTTTSCEEEEETTS--C
T ss_pred CCCEEEEEeCCH-HHHHHHHHHcCChh-------------hhcCcH-HHHHHHHHHHHHHHHHccccCcEEEEECCC--C
Confidence 344689999876 58999998885321 000011 22233322 221112222133679999999 9
Q ss_pred hHHHHHHHHHHHhcc
Q 039424 187 FQELVSNVIEFILHI 201 (203)
Q Consensus 187 ~~e~~~~i~~~i~~~ 201 (203)
+++++++|.+.+..+
T Consensus 187 ~~~v~~~I~~~l~~~ 201 (205)
T 2jaq_A 187 VKTQIELIMNKLNSI 201 (205)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988754
No 76
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.54 E-value=6.3e-15 Score=106.30 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=83.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|+|||||||+++.|++.+|+.++++|++.+...... ...+.. ...+ .....+.+.+...+..
T Consensus 16 i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~----~~~~~~----------~~~~--~~~~~~~~~~~~~~~~ 79 (180)
T 3iij_A 16 LTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYD----GYDEEY----------DCPI--LDEDRVVDELDNQMRE 79 (180)
T ss_dssp EECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEE----EEETTT----------TEEE--ECHHHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhh----hhhhhh----------cCcc--CChHHHHHHHHHHHhc
Confidence 57999999999999999999999999999866531100 000000 0000 1112233333444555
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHh
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLL 160 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 160 (203)
| ++|+|..... .... ..+..+|+|.+++ +++.+|+..|+... .... .....+.+...+
T Consensus 80 g-~~vv~~~~~~--~~~~--------~~~~~vi~L~~~~-e~l~~R~~~r~~~~---~~~~-------~~~~~~~~~~~~ 137 (180)
T 3iij_A 80 G-GVIVDYHGCD--FFPE--------RWFHIVFVLRTDT-NVLYERLETRGYNE---KKLT-------DNIQCEIFQVLY 137 (180)
T ss_dssp C-CEEEECSCCT--TSCG--------GGCSEEEEEECCH-HHHHHHHHHTTCCH---HHHH-------HHHHHHHTTHHH
T ss_pred C-CEEEEechhh--hcch--------hcCCEEEEEECCH-HHHHHHHHHcCCCH---HHHH-------HHHHHHHHHHHH
Confidence 5 4666763221 0000 1123688899866 58999999986431 0000 000001122222
Q ss_pred hhhcCCCCCCCCCCCeEEEecCCCCChHHH---HHHHHHHHhc
Q 039424 161 EGYCGCTEYDVGDVPKLTVDTTASVGFQEL---VSNVIEFILH 200 (203)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~id~~~~~~~~e~---~~~i~~~i~~ 200 (203)
+.+. ..+. ..++||+++ .+++++ +.+|++.+..
T Consensus 138 ~~~~---~~y~---~~~~i~~~~-~~~~ev~~~v~~i~~~l~~ 173 (180)
T 3iij_A 138 EEAT---ASYK---EEIVHQLPS-NKPEELENNVDQILKWIEQ 173 (180)
T ss_dssp HHHH---HHSC---GGGEEEEEC-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHcC---CCeEEEcCC-CCHHHHHHHHHHHHHHHHH
Confidence 2221 1121 357888887 799999 6666666543
No 77
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.54 E-value=2.1e-14 Score=106.20 Aligned_cols=171 Identities=15% Similarity=0.073 Sum_probs=83.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhh-----h-hhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCT-----L-SLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIA 74 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (203)
|+|+|||||||+++.|++.++..+++.+.+++.. . .+...+...... . .......+....+..+ +.+
T Consensus 14 l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~-~-----~~~~~~~~~~~r~~~~-~~i 86 (215)
T 1nn5_A 14 LEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDV-E-----DHSVHLLFSANRWEQV-PLI 86 (215)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCC-C-----HHHHHHHHHHHHHTTH-HHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCC-C-----HHHHHHHHHHHHHHHH-HHH
Confidence 5899999999999999998865555443332110 0 011111110000 0 0000000000001111 234
Q ss_pred HHHhhCCCcEEEeCCCCch---------HhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCC
Q 039424 75 STQLKLGVSVVVDSPLSRR---------AHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPS 145 (203)
Q Consensus 75 ~~~l~~~~~vIid~~~~~~---------~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~ 145 (203)
...+..+..||+|...... ...+.+..+......+..+|+|.+++ +++.+|+..| ...
T Consensus 87 ~~~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~-e~~~~Rl~r~-~~~----------- 153 (215)
T 1nn5_A 87 KEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQL-ADAAKRGAFG-HER----------- 153 (215)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCH-HHHHHC------CT-----------
T ss_pred HHHHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCH-HHHHHHhccC-ccc-----------
Confidence 5556778889999532100 01122222222223455789998866 5899998633 221
Q ss_pred CCCCCCCHHHHHHHhh-hhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 146 SWHKPSTWRDLERLLE-GYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 146 ~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+.. .+.+++. .|......+ ....++||++. +++++.++|.+.+..
T Consensus 154 ----~~~~-~~~~~~~~~~~~~~~~~--~~~~~~Id~~~--~~e~~~~~i~~~l~~ 200 (215)
T 1nn5_A 154 ----YENG-AFQERALRCFHQLMKDT--TLNWKMVDASK--SIEAVHEDIRVLSED 200 (215)
T ss_dssp ----TCSH-HHHHHHHHHHHHHTTCT--TSCEEEEETTS--CHHHHHHHHHHHHHH
T ss_pred ----cchH-HHHHHHHHHHHHHHHhC--CCCEEEEECCC--CHHHHHHHHHHHHHH
Confidence 0122 3333332 232222211 12568999888 999999999988754
No 78
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.53 E-value=3.1e-13 Score=100.79 Aligned_cols=33 Identities=36% Similarity=0.594 Sum_probs=30.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~ 33 (203)
|+|+|||||||+++.|++.+|++++++|++++.
T Consensus 10 i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~ 42 (227)
T 1cke_A 10 IDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRV 42 (227)
T ss_dssp EECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCcccCcceeeh
Confidence 589999999999999999999999999999765
No 79
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.53 E-value=1.7e-14 Score=104.46 Aligned_cols=33 Identities=27% Similarity=0.492 Sum_probs=30.5
Q ss_pred CCCCCCCChHHHHHHHHHh-CCCceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASA-LKIPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~-~~~~~i~~d~~~~~ 33 (203)
|+|+|||||||+++.|++. +|++++++|++.+.
T Consensus 15 l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~ 48 (184)
T 1y63_A 15 ITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE 48 (184)
T ss_dssp EECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHH
Confidence 5899999999999999999 79999999999665
No 80
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.53 E-value=2.5e-14 Score=108.70 Aligned_cols=162 Identities=12% Similarity=0.105 Sum_probs=89.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc----------eechhhHhhhhhhhhhh-hhccCCCccccchHHHHHhhhhhhhhHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIP----------LIDKDDVRDCTLSLQQT-LQKTTPHHQHATSAAAAASSLLNDLSYDV 69 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~----------~i~~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (203)
|+|+|||||||+|+.|++.+|++ ++++|++++.+...... ...+...+. .........
T Consensus 27 I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~-----------~~~~~d~~~ 95 (252)
T 1uj2_A 27 VSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFD-----------HPDAFDNEL 95 (252)
T ss_dssp EECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTT-----------SGGGBCHHH
T ss_pred EECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCC-----------CcchhhHHH
Confidence 58999999999999999999988 79999997643211000 000000000 000111122
Q ss_pred HHHHHHHHh------------------------hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHH
Q 039424 70 IWKIASTQL------------------------KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRR 125 (203)
Q Consensus 70 l~~~~~~~l------------------------~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~ 125 (203)
+.+.+.... .....||+||+..... ..+...+ + .+|+|.+++ +++.+
T Consensus 96 l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~--~~~~~~~---d---~vi~l~~~~-e~~~~ 166 (252)
T 1uj2_A 96 ILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYS--QEVRDLF---Q---MKLFVDTDA-DTRLS 166 (252)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSS--HHHHHHC---S---EEEEEECCH-HHHHH
T ss_pred HHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccC--HHHHHhc---C---eeEEEeCCH-HHHHH
Confidence 222222221 1245699999765311 1222222 2 578888766 58899
Q ss_pred HHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHhhhhcC--CC----CCCCCCCCeEEE----ecCCCCChHHHHHHHH
Q 039424 126 RLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLLEGYCG--CT----EYDVGDVPKLTV----DTTASVGFQELVSNVI 195 (203)
Q Consensus 126 R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~--~~----~~~~~~~~~~~i----d~~~~~~~~e~~~~i~ 195 (203)
|+..|.... ...+.+.+.+++..+.. .. .+... ++++| |++. +++++.++|.
T Consensus 167 R~~~R~~~~--------------rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~--ad~vI~~~id~~~--s~e~v~~~I~ 228 (252)
T 1uj2_A 167 RRVLRDISE--------------RGRDLEQILSQYITFVKPAFEEFCLPTKKY--ADVIIPRGADNLV--AINLIVQHIQ 228 (252)
T ss_dssp HHHHHHHHH--------------SCCCHHHHHHHHHHTHHHHHHHHTGGGGGG--CSEEEETGGGCHH--HHHHHHHHHH
T ss_pred HHHHHHHhh--------------hCCCHHHHHHHHHHhccHHHHHHhhhhhhc--CcEEEecCCCChh--HHHHHHHHHH
Confidence 988874100 00245555555443221 01 11222 44676 8866 9999999999
Q ss_pred HHHhc
Q 039424 196 EFILH 200 (203)
Q Consensus 196 ~~i~~ 200 (203)
+.+..
T Consensus 229 ~~l~~ 233 (252)
T 1uj2_A 229 DILNG 233 (252)
T ss_dssp HHHHC
T ss_pred HHHcc
Confidence 98864
No 81
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.53 E-value=4.6e-14 Score=103.56 Aligned_cols=168 Identities=11% Similarity=0.105 Sum_probs=87.4
Q ss_pred CCCCCCCChHHHHHHHHHhC-CCceechhhHh-hhhh--hhhhhhhccCCCccccchHHHHHhhhhh-hhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL-KIPLIDKDDVR-DCTL--SLQQTLQKTTPHHQHATSAAAAASSLLN-DLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-~~~~i~~d~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 75 (203)
|+|+|||||||+++.|++.+ |+++++.+... .... .+...+...... . .... ..+. ...+..+ +.+.
T Consensus 9 l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~-~-----~~~~-~~l~~~~r~~~~-~~i~ 80 (204)
T 2v54_A 9 FEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTY-N-----DHIV-NLLFCANRWEFA-SFIQ 80 (204)
T ss_dssp EECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCC-C-----HHHH-HHHHHHHHHTTH-HHHH
T ss_pred EEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCC-C-----HHHH-HHHHHHHHHHHH-HHHH
Confidence 58999999999999999998 68888765432 1111 112222111110 0 0000 0000 0000111 3345
Q ss_pred HHhhCCCcEEEeCCCCchH--------hHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCC
Q 039424 76 TQLKLGVSVVVDSPLSRRA--------HLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSW 147 (203)
Q Consensus 76 ~~l~~~~~vIid~~~~~~~--------~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~ 147 (203)
..+..+..||+|+...... ..+.+..+......+..+|+|+++++ ++.+ .|+.+.
T Consensus 81 ~~l~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e-~~~~---~R~~d~------------- 143 (204)
T 2v54_A 81 EQLEQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSK-EINR---NVGEEI------------- 143 (204)
T ss_dssp HHHHTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHH-HHTT---CCSSST-------------
T ss_pred HHHHCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHH-HHHh---hcCccc-------------
Confidence 5567788899997432110 02222223222224556899998765 6665 443221
Q ss_pred CCCCCHHHHHHHhhh-hcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 148 HKPSTWRDLERLLEG-YCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 148 ~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+. +.+.+++.. |......+. ...++||++. +++++.++|.+.+..
T Consensus 144 --~e~-~~~~~rl~~~y~~~~~~~~--~~~~~Id~~~--~~~~v~~~i~~~l~~ 190 (204)
T 2v54_A 144 --YED-VTFQQKVLQEYKKMIEEGD--IHWQIISSEF--EEDVKKELIKNIVIE 190 (204)
T ss_dssp --TCC-SHHHHHHHHHHHHHHTTCS--SCEEEECTTS--CHHHHHHHHHHHHHH
T ss_pred --ccH-HHHHHHHHHHHHHHHHhCC--CcEEEEECCC--CHHHHHHHHHHHHHH
Confidence 011 244444433 432222221 2568999988 999999999988753
No 82
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.53 E-value=4.4e-13 Score=99.48 Aligned_cols=171 Identities=23% Similarity=0.249 Sum_probs=92.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh--hhhhhh----hc---cC---------------CCccccc--hH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL--SLQQTL----QK---TT---------------PHHQHAT--SA 54 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~--~~~~~~----~~---~~---------------~~~~~~~--~~ 54 (203)
|+|+|||||||+++.|++.+|++++++|.+++.+. ..+... .. .. ..+.... ..
T Consensus 8 i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g~~~~~~~~ 87 (219)
T 2h92_A 8 LDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDNEDVTDFLR 87 (219)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETTEECGGGSS
T ss_pred EECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCCccchhhcC
Confidence 57999999999999999999999999999977531 111110 00 00 0000000 00
Q ss_pred HHHHhhhhhh-hhHHHHHHHH---HHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHh-
Q 039424 55 AAAASSLLND-LSYDVIWKIA---STQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEG- 129 (203)
Q Consensus 55 ~~~~~~~~~~-~~~~~l~~~~---~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~- 129 (203)
.......+.. ..++.+.+.+ ...+..+.++|+|+....... .. ..+ .+|+|.++++ ++.+|+..
T Consensus 88 ~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~~~~~~~-------~~--~~~-~vi~l~a~~e-~~~~R~~~~ 156 (219)
T 2h92_A 88 NNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVV-------LP--DAD-LKVYMIASVE-ERAERRYKD 156 (219)
T ss_dssp SSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEESSCCCCC-------CT--TCS-EEEEEECCHH-HHHHHHHHH
T ss_pred cHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcCCcccee-------cC--CCC-EEEEEECCHH-HHHHHHHHH
Confidence 0000000000 0111111111 122445667999985332111 11 112 5788887664 78888643
Q ss_pred ---cCCCCCCCccCCCCCCCCCCCCCHHHHHHHhhhhc------CCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 130 ---RGNEGGCGVVGDDRPSSWHKPSTWRDLERLLEGYC------GCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 130 ---R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~------~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
|+.. .+.+.+.++++.+. ....++.. ...++|||++ .++++++++|.+.+..
T Consensus 157 ~~~r~~~-----------------~~~e~~~~~~~~r~~~d~~r~~~~~~~~-~d~~~Id~~~-~~~ee~~~~I~~~l~~ 217 (219)
T 2h92_A 157 NQLRGIE-----------------SNFEDLKRDIEARDQYDMNREISPLRKA-DDAVTLDTTG-KSIEEVTDEILAMVSQ 217 (219)
T ss_dssp HHHTTCC-----------------CCHHHHHHHHHHHHHHHHHCSSSCSCCC-TTCEEEECTT-CCHHHHHHHHHHHHHT
T ss_pred HHhcCcc-----------------cCHHHHHHHHHHHHHhhhhhhccccccC-CCeEEEECCC-CCHHHHHHHHHHHHhc
Confidence 3211 25666776665442 11123322 2349999997 7999999999998875
Q ss_pred c
Q 039424 201 I 201 (203)
Q Consensus 201 ~ 201 (203)
.
T Consensus 218 ~ 218 (219)
T 2h92_A 218 I 218 (219)
T ss_dssp C
T ss_pred c
Confidence 3
No 83
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.52 E-value=5.5e-14 Score=104.68 Aligned_cols=175 Identities=10% Similarity=0.085 Sum_probs=90.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhh--hhhhh-hhccCCCccccch--HHHHH---------------hh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTL--SLQQT-LQKTTPHHQHATS--AAAAA---------------SS 60 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~--~~~~~-~~~~~~~~~~~~~--~~~~~---------------~~ 60 (203)
|.|++||||||+++.||+++|+++++.|.+.+... ++... +.. ..+.... ..... ..
T Consensus 19 i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~~~~~~---~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (223)
T 3hdt_A 19 IEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFRL---ADEKAGNNLLYRLGGGRKIDLHSKPSPNDKL 95 (223)
T ss_dssp EEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC-------------------------------------------
T ss_pred EeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCHHHHHH---HHhhccccHHHHHhccccccccccccccccc
Confidence 47999999999999999999999999766644321 21111 110 0000000 00000 00
Q ss_pred hhhhhhHHHHHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccC
Q 039424 61 LLNDLSYDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVG 140 (203)
Q Consensus 61 ~~~~~~~~~l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~ 140 (203)
...+..+....+.+.+.... .++|++|.... ..+. .... ....+.|||.+++ +.+.+|+..+.+.+
T Consensus 96 ~~~~~~f~~~~~~i~~la~~-~~~Vi~Grggg-~vl~----~~~~-~~~~~~VfL~A~~-e~r~~Ri~~~~~~~------ 161 (223)
T 3hdt_A 96 TSPENLFKFQSEVMRELAES-EPCIFVGRAAG-YVLD----QDED-IERLIRIFVYTDK-VKKVQRVMEVDCID------ 161 (223)
T ss_dssp --HHHHHHHHHHHHHHHHHH-SCEEEESTTHH-HHHH----HCTT-CCEEEEEEEECCH-HHHHHHHHHHHTCC------
T ss_pred ccHHHHHHHHHHHHHHHHhC-CCEEEEeCCcc-hhcc----cccC-CCCeEEEEEECCH-HHHHHHHHHhcCCC------
Confidence 00111222223344443333 46888875332 1110 0011 2235789999866 58999988764332
Q ss_pred CCCCCCCCCCCCHHHHHHHhhhhcCCCC------CCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 141 DDRPSSWHKPSTWRDLERLLEGYCGCTE------YDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 141 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~------~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
..+..+.+.++.+.+.+... +......+++|||+. ++++++++.|++.++..
T Consensus 162 --------~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~-l~~eevv~~I~~~i~~~ 219 (223)
T 3hdt_A 162 --------EERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTK-LTLEETAELIKAYIRLK 219 (223)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTT-CCHHHHHHHHHHHHHHT
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCC-CCHHHHHHHHHHHHHHh
Confidence 01122233333332221111 122234679999999 89999999999998754
No 84
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.51 E-value=1.3e-13 Score=104.28 Aligned_cols=182 Identities=15% Similarity=0.106 Sum_probs=101.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhh-
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLK- 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~- 79 (203)
|+|+|||||||+++.|++++|+..++.|++...-.+.. .+.+. ................+.+.+...+.
T Consensus 32 l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~------~~~~~----~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 32 ILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS------TEVGE----MAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT------CHHHH----HHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC------ChHHH----HHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 57999999999999999999999999998854321100 00000 00000000000111222333333232
Q ss_pred -CCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCcc----CCCC-----------
Q 039424 80 -LGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVV----GDDR----------- 143 (203)
Q Consensus 80 -~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~----~~~~----------- 143 (203)
.+.++++|+........+. +..... +-.+++|++++ +++.+|+..|....-+|.+ +.+|
T Consensus 102 ~~~~~~il~g~~~~~~~~~~---l~~~~~-~~~vi~L~~~~-~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~E 176 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEA---LDKICE-VDLVISLNIPF-ETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGE 176 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHH---HHTTCC-CCEEEEEECCH-HHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCC
T ss_pred cCCCeEEEECCCCCHHHHHH---HHhhcC-CCEEEEEECCH-HHHHHHHHcCCCcCCCCCccccccCCCccccccccccc
Confidence 3556889984333222222 221112 22578888766 4888999887544444431 2222
Q ss_pred CCCCCCCCCHHHHHHHhhhhcCCC----CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 144 PSSWHKPSTWRDLERLLEGYCGCT----EYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 144 ~~~~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+..++.++..+.+.+++..+.... .++......++||++. + ++++++|.+.+..
T Consensus 177 P~~~ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~--~-~~v~~~i~~~l~~ 234 (246)
T 2bbw_A 177 PLVQQEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTE--T-NKIWPYVYTLFSN 234 (246)
T ss_dssp BCBCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSC--H-HHHHHHHHHHHHT
T ss_pred ccccCCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCC--c-HHHHHHHHHHHHh
Confidence 222344566777777776653221 1333333568899988 7 9999999998864
No 85
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.51 E-value=1e-13 Score=115.36 Aligned_cols=124 Identities=15% Similarity=0.167 Sum_probs=81.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc-----eechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIP-----LIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~-----~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|+|||||||+|+.|++.+++. +++.|++++.+.+.......-.+.. ..............+ +.+.
T Consensus 40 lvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~-------~~~~~~re~~~~~~l-~~~~ 111 (520)
T 2axn_A 40 MVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDN-------EEAMKVRKQCALAAL-RDVK 111 (520)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTC-------HHHHHHHHHHHHHHH-HHHH
T ss_pred EECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCccc-------HHHHHHHHHHHHHHH-HHHH
Confidence 57999999999999999988544 3677998776542100000000100 000000011111112 2233
Q ss_pred HHh--hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCC
Q 039424 76 TQL--KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGN 132 (203)
Q Consensus 76 ~~l--~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~ 132 (203)
..+ ..|..||+|+++.....++.+.++++..+.++++|++.|++++++.+|+..|..
T Consensus 112 ~~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~~ 170 (520)
T 2axn_A 112 SYLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASNIMEVKI 170 (520)
T ss_dssp HHHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHHHHHTT
T ss_pred HHHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHHHHhhhh
Confidence 334 568889999999998999999888888898888999998878888999977753
No 86
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.51 E-value=1.3e-12 Score=98.24 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=31.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~ 33 (203)
|+|++||||||+++.|++.+|++++++|.+++.
T Consensus 21 i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~ 53 (236)
T 1q3t_A 21 IDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRA 53 (236)
T ss_dssp EECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHcCCceecCCCeeEc
Confidence 579999999999999999999999999999765
No 87
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.51 E-value=1.6e-14 Score=106.36 Aligned_cols=99 Identities=13% Similarity=0.174 Sum_probs=59.4
Q ss_pred HHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhC-CeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCC
Q 039424 73 IASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMR-AGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPS 151 (203)
Q Consensus 73 ~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 151 (203)
.+...+..|..||+|+... ....+ ....+ ....+|++.+++.+++.+|+..|+..
T Consensus 95 ~i~~~l~~g~~vi~d~~~~---~~~~l---~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~------------------ 150 (204)
T 2qor_A 95 EYDLAVGEGKICLFEMNIN---GVKQL---KESKHIQDGIYIFVKPPSIDILLGRLKNRNTE------------------ 150 (204)
T ss_dssp HHHHHHHTTCEEEEECCHH---HHHHH---HHCSSCSCCEEEEEECSCHHHHHHHHHTCTTS------------------
T ss_pred HHHHHHHcCCeEEEEECHH---HHHHH---HHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCC------------------
Confidence 4455667899999997432 12222 22112 03467888744556999999988643
Q ss_pred CHHHHHHHhhhhc-CCCC-CCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 152 TWRDLERLLEGYC-GCTE-YDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 152 ~~e~~~~~~~~~~-~~~~-~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+.+.+++.... ++.. +... .+++|+++ ++++++++|.+.|..
T Consensus 151 ~~~~i~~rl~~~~~~~~~~~~~~--~d~vi~n~---~~e~~~~~i~~~i~~ 196 (204)
T 2qor_A 151 KPEEINKRMQELTREMDEADKVG--FNYFIVND---DLARTYAELREYLLG 196 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT--CSEEEECS---SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhhcc--CcEEEECc---CHHHHHHHHHHHHHH
Confidence 4567776665432 1211 2222 23566654 699999999988864
No 88
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.47 E-value=1.6e-13 Score=99.24 Aligned_cols=105 Identities=15% Similarity=0.211 Sum_probs=66.4
Q ss_pred HHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCC
Q 039424 70 IWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHK 149 (203)
Q Consensus 70 l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~ 149 (203)
..+.+...+..|..+|+|... +.... +....+....+|++.+|+.+++.+|+..|+..
T Consensus 81 ~~~~v~~~l~~g~~vil~id~---~g~~~---~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e---------------- 138 (186)
T 1ex7_A 81 TVASVKQVSKSGKTCILDIDM---QGVKS---VKAIPELNARFLFIAPPSVEDLKKRLEGRGTE---------------- 138 (186)
T ss_dssp EHHHHHHHHHHTSEEEEECCH---HHHHH---HHTCGGGCCEEEEEECSCHHHHHHHHHHHCCS----------------
T ss_pred ecceeeehhhCCCEEEecCCH---HHHHH---HHHhcccCceEEEEeCCCHHHHHHHHHhcCCC----------------
Confidence 344566778889999999742 12222 22223333456777777778999999999764
Q ss_pred CCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 150 PSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 150 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+.+.+|+........+.....-+.+|.| . ++++..++|.+.|..-
T Consensus 139 --~~e~i~~Rl~~a~~e~~~~~~~~fD~vIvN-d--dle~a~~~l~~iI~ae 185 (186)
T 1ex7_A 139 --TEESINKRLSAAQAELAYAETGAHDKVIVN-D--DLDKAYKELKDFIFAE 185 (186)
T ss_dssp --CHHHHHHHHHHHHHHHHHHTTTCSSEEEEC-S--SHHHHHHHHHHHHTTC
T ss_pred --CHHHHHHHHHHHHHHHhhccccCCcEEEEC-c--CHHHHHHHHHHHHHhc
Confidence 678888888764321111111112345555 4 5999999999988653
No 89
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.46 E-value=2.6e-13 Score=99.99 Aligned_cols=166 Identities=16% Similarity=0.091 Sum_probs=85.5
Q ss_pred CCCCCCCChHHHHHHHHHhC-CCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHH--
Q 039424 1 MKGHPGTGKSTLADAIASAL-KIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQ-- 77 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 77 (203)
|+|+|||||||+++.|++.+ ++.+++.|++...-..+ ....+...............+ ...+.......
T Consensus 26 i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l----~~~i~~~l~~~~~ 97 (207)
T 2qt1_A 26 ISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEI----ETDKNGFLQYDVLEALNMEKM----MSAISCWMESARH 97 (207)
T ss_dssp EEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGS----CBCTTSCBCCSSGGGBCHHHH----HHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHh----hccccCCChhHHHHHhHHHHH----HHHHHHHHhCCCC
Confidence 57999999999999999888 89999999986432111 000110000000000000001 11111111111
Q ss_pred ---------hhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCC
Q 039424 78 ---------LKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWH 148 (203)
Q Consensus 78 ---------l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~ 148 (203)
......+|+||+.... . +. +. ..+..++++++++ +++.+|+..|+...
T Consensus 98 ~~~~~~~~~~~~~~~vi~eg~~~~~-~-~~---~~---~~~d~~i~l~~~~-~~~~~R~~~R~~~~-------------- 154 (207)
T 2qt1_A 98 SVVSTDQESAEEIPILIIEGFLLFN-Y-KP---LD---TIWNRSYFLTIPY-EECKRRRSTRVYQP-------------- 154 (207)
T ss_dssp SSCCC-----CCCCEEEEECTTCTT-C-GG---GT---TTCSEEEEEECCH-HHHHHHHHHSCCSS--------------
T ss_pred CCcCCCeeecCCCCEEEEeehHHcC-c-HH---HH---HhcCeeEEEECCH-HHHHHHHHHcCCCc--------------
Confidence 1124569999965432 1 11 11 1223678888765 57888988775321
Q ss_pred CCCCHHHHHH-HhhhhcCC-CCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 149 KPSTWRDLER-LLEGYCGC-TEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 149 ~~~~~e~~~~-~~~~~~~~-~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
....+.+.. ....|... ..+...+...++||++. +++++.++|.+.+..
T Consensus 155 -e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Id~~~--~~eev~~~I~~~l~~ 205 (207)
T 2qt1_A 155 -PDSPGYFDGHVWPMYLKYRQEMQDITWEVVYLDGTK--SEEDLFLQVYEDLIQ 205 (207)
T ss_dssp -CCCTTHHHHTHHHHHHHHHHHGGGCSSCCEEEETTS--CHHHHHHHHHHHHTT
T ss_pred -cchHHHHHHHHhHHHHHHHHHHHhcCCeEEEecCCC--CHHHHHHHHHHHHHh
Confidence 011111111 01111100 11112234557899999 999999999998864
No 90
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=99.45 E-value=4.4e-13 Score=99.60 Aligned_cols=165 Identities=13% Similarity=0.075 Sum_probs=83.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCC----ceec-h--------hhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKI----PLID-K--------DDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSY 67 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~----~~i~-~--------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (203)
|.|++||||||+++.|++.++. .++- + +...+.+. .. ..... .....-.+...-+
T Consensus 26 ~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l------~~-~~~~~-----~~~e~llf~a~R~ 93 (223)
T 3ld9_A 26 FEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLL------FK-AQGLD-----SLSELLFFIAMRR 93 (223)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHH------HT-CSSCC-----HHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHH------hC-CCCCC-----HHHHHHHHHHHHH
Confidence 4799999999999999988754 3332 1 11111111 00 00000 0000001111223
Q ss_pred HHHHHHHHHHhhCCCcEEEeCCC------------CchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCC
Q 039424 68 DVIWKIASTQLKLGVSVVVDSPL------------SRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGG 135 (203)
Q Consensus 68 ~~l~~~~~~~l~~~~~vIid~~~------------~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~ 135 (203)
+.+.+.+...+..|..||+|... ...++...+...... ..|..+|+|+++++ ++.+|+ .|.+..
T Consensus 94 ~~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e-~~~~Ri-~rdr~E- 169 (223)
T 3ld9_A 94 EHFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDIN-ESLSRS-CKNGYE- 169 (223)
T ss_dssp HHHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC-----------------
T ss_pred HHHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHH-HHHHHh-ccCccc-
Confidence 44455577788899999999821 112344444443433 45778999998775 888898 443221
Q ss_pred CCccCCCCCCCCCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 136 CGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
....+.+.+..+.|......+. ...++||++. +++++ ++|.+.+..
T Consensus 170 --------------~~~~e~~~rv~~~y~~la~~~~--~~~~vIDa~~--sieeV-~~I~~~l~~ 215 (223)
T 3ld9_A 170 --------------FADMEFYYRVRDGFYDIAKKNP--HRCHVITDKS--ETYDI-DDINFVHLE 215 (223)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHCT--TTEEEEESSC--SSSCC-CHHHHHHHH
T ss_pred --------------cchHHHHHHHHHHHHHHHHHCC--CCEEEEcCCC--CHHHH-HHHHHHHHH
Confidence 1123334444444543322222 2679999999 99999 888887753
No 91
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.44 E-value=4e-13 Score=112.11 Aligned_cols=161 Identities=23% Similarity=0.232 Sum_probs=82.4
Q ss_pred CCCCCCCChHHHHHHHHHhCC------CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK------IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIA 74 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~------~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (203)
|+|++||||||+++.|+..++ +.+++.|.+++.+. ...+.. ......+. ..+...+
T Consensus 374 LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~---------~~l~f~----~~~r~~~~-----r~i~~v~ 435 (552)
T 3cr8_A 374 FTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLS---------SELGFS----KAHRDVNV-----RRIGFVA 435 (552)
T ss_dssp EEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTT---------SSCCCS----HHHHHHHH-----HHHHHHH
T ss_pred EECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhc---------cccCCC----HHHHHHHH-----HHHHHHH
Confidence 579999999999999998874 44689988865321 000000 00000111 1112222
Q ss_pred HHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHH
Q 039424 75 STQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWR 154 (203)
Q Consensus 75 ~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e 154 (203)
+.....+..+|..+.......++..+++....+ .+.+|+|.++.+ ++.+|.. |+- |. .....
T Consensus 436 q~l~~~~~ivi~~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~~e-~~~~R~~-r~l-------~~--------~~~~~ 497 (552)
T 3cr8_A 436 SEITKNRGIAICAPIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIE-TCESRDR-KGL-------YA--------KARAG 497 (552)
T ss_dssp HHHHHTTCEEEECCCCCCHHHHHHHHHHHHTTS-EEEEEEECC-------------------------------------
T ss_pred HHHHhcCCEEEEecCCccHHHHHHHHHHHHHcC-CEEEEEEcCCHH-HHHHhcc-ccc-------cc--------cccHh
Confidence 223334545565554333455666667776666 788999998775 8888864 211 11 11122
Q ss_pred HHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 155 DLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
.+......+ ..|+.+..+.++|||++ .++++++++|++.+...
T Consensus 498 ~i~~l~~~r---~~~e~P~~adl~Idt~~-~s~~e~v~~Il~~L~~~ 540 (552)
T 3cr8_A 498 LIPEFTGVS---DPYEVPETPELAIDTTG-LAIDEAVQQILLKLEHE 540 (552)
T ss_dssp ------------CCCCCCSSCSEEECCSS-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc---ccccCCCCCCEEEECCC-CCHHHHHHHHHHHHHhc
Confidence 233333222 23554444669999997 79999999999988653
No 92
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.44 E-value=2.1e-12 Score=93.73 Aligned_cols=156 Identities=19% Similarity=0.169 Sum_probs=86.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCC-ceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKI-PLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLK 79 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~-~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 79 (203)
|+|++||||||+++.|+..++. .+++.|++.+.... . ..+. .. ........++.+...+.....
T Consensus 7 l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~---~---~~~~--------~~-~~~~~~~~~~~l~~~~~~~~~ 71 (189)
T 2bdt_A 7 ITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVG---G---YRPP--------WE-SDELLALTWKNITDLTVNFLL 71 (189)
T ss_dssp EECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCT---T---CCCG--------GG-CHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhcc---c---cccC--------cc-chhHHHHHHHHHHHHHHHHHh
Confidence 5799999999999999988865 78999888643110 0 0000 00 000001223333333444455
Q ss_pred CCCcEEEeCCCCchHhHHHHHHHHH--hhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHH
Q 039424 80 LGVSVVVDSPLSRRAHLEKLVKLAG--EMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLE 157 (203)
Q Consensus 80 ~~~~vIid~~~~~~~~~~~~~~~~~--~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~ 157 (203)
.+..+|+|+.. .....+.+.++.+ ..+..+.+++|.+++ +.+.+|+..|.... +..+..... .
T Consensus 72 ~~~~~ild~~~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~-e~l~~R~~~r~~d~------------~ld~~~~~~-~ 136 (189)
T 2bdt_A 72 AQNDVVLDYIA-FPDEAEALAQTVQAKVDDVEIRFIILWTNR-EELLRRDALRKKDE------------QMGERCLEL-V 136 (189)
T ss_dssp TTCEEEEESCC-CHHHHHHHHHHHHHHCSSEEEEEEEEECCH-HHHHHHTTTSCC----------------CGGGGHH-H
T ss_pred cCCcEEEeecc-CHHHHHHHHHHHHhcccCCCeEEEEEeCCH-HHHHHHHHhccccc------------cCCHHHHHH-H
Confidence 67789999853 3344455555432 223356677888655 58999999885432 111111122 2
Q ss_pred HHhhhhcCCCCCCCCCCCeEEEecCCCC---ChHHHHHHHH
Q 039424 158 RLLEGYCGCTEYDVGDVPKLTVDTTASV---GFQELVSNVI 195 (203)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~e~~~~i~ 195 (203)
+.+. .+ +.. ...+|+++. . ++++++.+|.
T Consensus 137 ~~~~---~~---~~~--~~~ii~tsh-~~~~~~e~~~~~i~ 168 (189)
T 2bdt_A 137 EEFE---SK---GID--ERYFYNTSH-LQPTNLNDIVKNLK 168 (189)
T ss_dssp HHHH---HT---TCC--TTSEEECSS-SCGGGHHHHHHHHH
T ss_pred HHHh---hc---CCC--ccEEEeCCC-CChhhHHHHHHHHh
Confidence 2221 11 111 347899988 6 6778888776
No 93
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.38 E-value=1e-12 Score=96.37 Aligned_cols=99 Identities=18% Similarity=0.109 Sum_probs=59.8
Q ss_pred HHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCC
Q 039424 73 IASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPST 152 (203)
Q Consensus 73 ~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~ 152 (203)
.+...+..+..+|+|+... ....+ ...... ...|++.+++.+++.+|+..|+.. +
T Consensus 89 ~i~~~l~~g~~vi~d~~~~---~~~~~---~~~~~~-~~~v~~~~~~~e~l~~Rl~~R~~~------------------~ 143 (205)
T 3tr0_A 89 WVLRQLKAGRDVLLEIDWQ---GARQI---RELFPP-ALSIFILPPSIEALRERLIKRRQD------------------D 143 (205)
T ss_dssp HHHHHHHTTCEEEEECCHH---HHHHH---HHHCTT-CEEEEEECSCHHHHHHHHHTCTTS------------------C
T ss_pred HHHHHHHcCCeEEEEECHH---HHHHH---HHhCCC-cEEEEEECcCHHHHHHHHHHhCCC------------------C
Confidence 4556677888899997321 22222 222232 345666666677999999999654 2
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 153 WRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 153 ~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
.+.+.++++.+.+...+... .+++|+++ +++++.++|.+.+...
T Consensus 144 ~~~i~~rl~~~~~~~~~~~~--~d~vi~n~---~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 144 TAIIEQRLALAREEMAHYKE--FDYLVVND---NFDQAVQNLIHIISAE 187 (205)
T ss_dssp SSTHHHHHHHHHHHHTTGGG--CSEEEECS---SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccC--CCEEEECC---CHHHHHHHHHHHHHHH
Confidence 23455555554332233322 34667754 6999999999988653
No 94
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=99.34 E-value=3e-12 Score=94.72 Aligned_cols=172 Identities=15% Similarity=0.121 Sum_probs=88.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech-----h-hHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK-----D-DVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIA 74 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~-----d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 74 (203)
|.|++||||||+++.|++.++..+.-. + .+-+. +...+.. +....... ... .-.... -++ ..+.+
T Consensus 10 ~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~---ir~~l~~--~~~~~~~~-~~~-llf~a~-R~~-~~~~I 80 (216)
T 3tmk_A 10 IEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGL---INEYLTD--DSFQLSDQ-AIH-LLFSAN-RWE-IVDKI 80 (216)
T ss_dssp EEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHH---HHHHHHC--TTSCCCHH-HHH-HHHHHH-HHT-THHHH
T ss_pred EECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHH---HHHHHHh--cccCCCHH-HHH-HHHHHH-HHH-HHHHH
Confidence 469999999999999999997522111 1 11000 1111111 10000000 000 000111 112 23456
Q ss_pred HHHhhCCCcEEEeCCCCc-----------hHhHHHHHHHHHhhCCeEEEEEe-cCCCHHHHHHHHHhcCCCCCCCccCCC
Q 039424 75 STQLKLGVSVVVDSPLSR-----------RAHLEKLVKLAGEMRAGLVIVEC-KPSDEAEWRRRLEGRGNEGGCGVVGDD 142 (203)
Q Consensus 75 ~~~l~~~~~vIid~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~l-~~~~~e~~~~R~~~R~~~~~~~~~~~~ 142 (203)
...+..|..||+|..... ....+++..+......|..+|+| +.+++ ++.+|+..|. +.
T Consensus 81 ~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe-~~~~R~~~~~-dr-------- 150 (216)
T 3tmk_A 81 KKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVD-NNAEKSGFGD-ER-------- 150 (216)
T ss_dssp HHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCS-CGGGCCSSSC-CT--------
T ss_pred HHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHH-HHHHHhccCc-cc--------
Confidence 677889999999983111 11223333333222357789999 98886 7777764332 11
Q ss_pred CCCCCCCCCCHHHHHHHhhhhcCCCCCC--CCCCCeEEEe-cCCCCChHHHHHHHHHHHhc
Q 039424 143 RPSSWHKPSTWRDLERLLEGYCGCTEYD--VGDVPKLTVD-TTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 143 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~--~~~~~~~~id-~~~~~~~~e~~~~i~~~i~~ 200 (203)
-+..+-+.+..+.|..+.... ......++|| ++. +++++.++|.+.|..
T Consensus 151 -------~E~~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~--s~eeV~~~I~~~i~~ 202 (216)
T 3tmk_A 151 -------YETVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNK--GIQEVEALIWQIVEP 202 (216)
T ss_dssp -------TCCHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTC--CHHHHHHHHHHHHHH
T ss_pred -------ccHHHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCC--CHHHHHHHHHHHHHH
Confidence 023333333333343332210 0123679999 666 999999999988763
No 95
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.32 E-value=8.8e-13 Score=95.60 Aligned_cols=103 Identities=16% Similarity=0.223 Sum_probs=42.6
Q ss_pred HHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCC
Q 039424 72 KIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPS 151 (203)
Q Consensus 72 ~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 151 (203)
+.+...+..|..+|+|.... ....++ ...+....+|++.+|+.+++.+|+..|+..
T Consensus 83 ~~i~~~l~~g~~~il~~~~~---g~~~l~---~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~------------------ 138 (186)
T 3a00_A 83 ASVKQVSKSGKTCILDIDMQ---GVKSVK---AIPELNARFLFIAPPSVEDLKKRLEGRGTE------------------ 138 (186)
T ss_dssp HHHHHHHHTTCEEEEECCHH---HHHHHH---TCGGGCCEEEEEECSCC-------------------------------
T ss_pred HHHHHHHHcCCeEEEEEcHH---HHHHHH---HhcCCCeEEEEEECcCHHHHHHHHHhcCCC------------------
Confidence 34556678899999997432 112222 102334456888876646899999998754
Q ss_pred CHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 152 TWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 152 ~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+.+.+|++.......+......+++|.++ ++++..++|.+.+...
T Consensus 139 ~~~~i~~rl~~~~~~~~~~~~~~~d~vi~nd---~~~~a~~~l~~~i~~~ 185 (186)
T 3a00_A 139 TEESINKRLSAAQAELAYAETGAHDKVIVND---DLDKAYKELKDFIFAE 185 (186)
T ss_dssp --------------------CCCCSEEEECS---SHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHhhcccCCcEEEECc---CHHHHHHHHHHHHHhc
Confidence 4466777776554322221012234566654 5899999999988754
No 96
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=3.7e-13 Score=99.31 Aligned_cols=99 Identities=18% Similarity=0.249 Sum_probs=54.9
Q ss_pred HHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCC
Q 039424 72 KIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPS 151 (203)
Q Consensus 72 ~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 151 (203)
..+...+..|..+|+|.... .... +......++ +|++.+++.+++.+|+..|+..
T Consensus 90 ~~i~~~l~~g~~vild~~~~---g~~~---~~~~~~~~~-~i~i~~ps~~~l~~Rl~~R~~~------------------ 144 (208)
T 3tau_A 90 EYVEEKLAAGVDIFLEIEVQ---GAMQ---VRKAMPEGI-FIFLTPPDLSELKNRIIGRGTE------------------ 144 (208)
T ss_dssp HHHHHHHHTTCCEEEECCHH---HHHH---HHHHCTTSE-EEEEECTTTTTSSCC-------------------------
T ss_pred HHHHHHHHcCCeEEEEeeHH---HHHH---HHHhCCCeE-EEEEeCCCHHHHHHHHHhcCCC------------------
Confidence 34566778899999998422 1222 223333334 4555555456899999998653
Q ss_pred CHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 152 TWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 152 ~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+.+.+|++.......+... .+.+|.+ + ++++++++|.+.+..
T Consensus 145 ~~e~i~~Rl~~~~~e~~~~~~--~d~vivN-~--~~~~~~~~l~~~i~~ 188 (208)
T 3tau_A 145 SMEVVEERMETAKKEIEMMAS--YDYAVVN-D--VVANAVQKIKGIVET 188 (208)
T ss_dssp CCHHHHHHHHHHHHHHHHGGG--SSEEEEC-S--SHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcc--CCEEEEC-c--CHHHHHHHHHHHHHH
Confidence 346777777665422122222 3356665 4 599999999988864
No 97
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=99.31 E-value=3e-12 Score=97.70 Aligned_cols=77 Identities=19% Similarity=0.242 Sum_probs=47.1
Q ss_pred CeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCH---HHHHHHhhhhcC---C-CCCCC-CCCCeEEE
Q 039424 108 AGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTW---RDLERLLEGYCG---C-TEYDV-GDVPKLTV 179 (203)
Q Consensus 108 ~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~---e~~~~~~~~~~~---~-~~~~~-~~~~~~~i 179 (203)
.|..+|+|++++ +++.+|+..|++.. . ..... +.+..+.+.+.. . ..|.. .....++|
T Consensus 174 ~pd~vi~L~~~~-e~~~~Ri~~R~r~~------~-------~~~~~~~~~~l~~~~~~~~~~~~v~~~y~~~~~~~~~~I 239 (263)
T 1p5z_B 174 ELDGIIYLQATP-ETCLHRIYLRGRNE------E-------QGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTL 239 (263)
T ss_dssp CCSEEEEEECCH-HHHHHHHHHHCCGG------G-------TTCCHHHHHHHHHHHHHHHTTCCCCCSCGGGGGSCEEEE
T ss_pred CCCeEEEEECCH-HHHHHHHHhcCCcc------c-------cCccHHHHHHHHHHHHHHHhhccchhhhhhhccCCEEEE
Confidence 456789999876 58999998885431 0 01122 333334333311 1 11210 11357899
Q ss_pred ecCCCCChHHHHHHHHHHHhc
Q 039424 180 DTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 180 d~~~~~~~~e~~~~i~~~i~~ 200 (203)
|++. +++++.++|.+.|..
T Consensus 240 d~~~--~~eev~~~I~~~l~~ 258 (263)
T 1p5z_B 240 DVNE--DFKDKYESLVEKVKE 258 (263)
T ss_dssp ECCS--CHHHHHHHHHHHHHH
T ss_pred ECCC--CHHHHHHHHHHHHHH
Confidence 9999 999999999998864
No 98
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.30 E-value=9.1e-12 Score=94.59 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=69.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccc-----hHH--HHHhhhhhhhhH-HHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHAT-----SAA--AAASSLLNDLSY-DVIWK 72 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~-~~l~~ 72 (203)
|+|+|||||||+|+.|++.+++.+++.|.+... .+.. +....+...... ... ......+....+ .....
T Consensus 6 I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~-~~~~--~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 82 (253)
T 2ze6_A 6 IYGPTCSGKTDMAIQIAQETGWPVVALDRVQCC-PQIA--TGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLIF 82 (253)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCCEEECCSGGGC-GGGT--TTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHhcCCCeEEeccHHhcc-CCCc--cccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHHH
Confidence 579999999999999999999999999997421 0000 000001000000 000 000000111111 12233
Q ss_pred HHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHh----hCCeEEEEEecCCCHHHHHHHHHhcCC
Q 039424 73 IASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGE----MRAGLVIVECKPSDEAEWRRRLEGRGN 132 (203)
Q Consensus 73 ~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~----~~~~~~~v~l~~~~~e~~~~R~~~R~~ 132 (203)
.+ ..+..+..+|+++... . .+..+... .+.++.+++|.+++.+++.+|+..|..
T Consensus 83 ~i-~~~~~g~~vIl~gg~~--~---~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~ 140 (253)
T 2ze6_A 83 EV-DWRKSEEGLILEGGSI--S---LLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVA 140 (253)
T ss_dssp HH-HTTTTSSEEEEEECCH--H---HHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred HH-HHHhCCCCeEEeccHH--H---HHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHHH
Confidence 34 4556788888887543 1 22334443 456778899998774689999999864
No 99
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=99.29 E-value=6.1e-11 Score=97.66 Aligned_cols=123 Identities=12% Similarity=0.085 Sum_probs=75.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCce-----echhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPL-----IDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~-----i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|+|+|||||||+++.|++.+++.+ ++.|.+++...+.... ...+... ...............+. .+.
T Consensus 44 lvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~----~~ifd~~---g~~~~r~re~~~~~~l~-~~~ 115 (469)
T 1bif_A 44 MVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKS----FEFFLPD---NEEGLKIRKQCALAALN-DVR 115 (469)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCC----GGGGCTT---CHHHHHHHHHHHHHHHH-HHH
T ss_pred EECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCc----ccccCCC---CHHHHHHHHHHHHHHHH-HHH
Confidence 579999999999999999876544 4445555543211000 0000000 00000001011111121 223
Q ss_pred HHh--hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcC
Q 039424 76 TQL--KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRG 131 (203)
Q Consensus 76 ~~l--~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~ 131 (203)
..+ ..|..+|+|+++...+.++.+...++..+..++++.+.|++.+++.+|+..+.
T Consensus 116 ~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~ 173 (469)
T 1bif_A 116 KFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAANIVQVK 173 (469)
T ss_dssp HHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHHHHHHT
T ss_pred HHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHhh
Confidence 444 45778999999888889999888888888888888888888878888887654
No 100
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.29 E-value=3.4e-11 Score=87.29 Aligned_cols=161 Identities=19% Similarity=0.217 Sum_probs=88.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc--eechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIP--LIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQL 78 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~--~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 78 (203)
|+|+|||||||+++.|+..++.. +++.|++...... ......... ... ......+.+........
T Consensus 14 l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~-------~~~~~~~~~--~~~----~~~~v~~~l~~~~~~~~ 80 (191)
T 1zp6_A 14 LSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKH-------GRIDPWLPQ--SHQ----QNRMIMQIAADVAGRYA 80 (191)
T ss_dssp EEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCS-------SCCCTTSSS--HHH----HHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhc-------ccccCCccc--hhh----hhHHHHHHHHHHHHHHh
Confidence 57999999999999999876544 7888887543110 000000000 000 00112222222222223
Q ss_pred hCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHH
Q 039424 79 KLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLER 158 (203)
Q Consensus 79 ~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 158 (203)
..+..+++|.... ...++.+.. .+.++..+++.++ .+++..|+..|.... . ...+.+..
T Consensus 81 ~~~~~~~~~~~~~-~~~l~~~~~----~~~~~~~ls~~~~-~~v~~~R~~~r~~~~-------------l--ld~~~~~~ 139 (191)
T 1zp6_A 81 KEGYFVILDGVVR-PDWLPAFTA----LARPLHYIVLRTT-AAEAIERCLDRGGDS-------------L--SDPLVVAD 139 (191)
T ss_dssp HTSCEEEECSCCC-TTTTHHHHT----TCSCEEEEEEECC-HHHHHHHHHTTCTTS-------------C--CCHHHHHH
T ss_pred ccCCeEEEeccCc-HHHHHHHHh----cCCCeEEEEecCC-HHHHHHHHHhcCCCc-------------c--CCHHHHHH
Confidence 4566688887432 222232221 1344567888865 468999999884331 1 13344444
Q ss_pred HhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 159 LLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
..+.+.++ +.. ..++||+++ .++++++++|.+.+...
T Consensus 140 ~~~~~~~l---~~~--~~~~i~t~~-~~~~~~~~~i~~~l~~~ 176 (191)
T 1zp6_A 140 LHSQFADL---GAF--EHHVLPVSG-KDTDQALQSAINALQSG 176 (191)
T ss_dssp HHHHTTCC---GGG--GGGEEECTT-CCTTTTTTTTHHHHHHT
T ss_pred HHHHHhcc---Ccc--cccEEECCC-CCHHHHHHHHHHHHHhh
Confidence 44433322 211 347899986 59999999999888654
No 101
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=99.26 E-value=5.9e-12 Score=92.38 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=41.3
Q ss_pred HHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCC
Q 039424 73 IASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPST 152 (203)
Q Consensus 73 ~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~ 152 (203)
.+...+..|..+|+|++.... ..+... .+ ...++++.+++.+++.+|+..|+.. +
T Consensus 89 ~i~~~l~~g~~vv~d~~~~~~---~~~~~~---~~-~~~~i~~~~~~~~~~~~Rl~~R~~~------------------~ 143 (207)
T 2j41_A 89 YVKDTMDEGHDVFLEIEVEGA---KQVRKK---FP-DALFIFLAPPSLEHLRERLVGRGTE------------------S 143 (207)
T ss_dssp HHHHHHHTTCEEEEECCGGGH---HHHHHH---CT-TSEEEEEECCC---------------------------------
T ss_pred HHHHHHHcCCeEEEEECHHHH---HHHHHh---cC-CeEEEEEECCCHHHHHHHHHhcCCC------------------C
Confidence 345556778889999975432 222222 12 2234555434456899999988643 3
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 153 WRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 153 ~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
.+.+.+++..+.....++.. ..++|+++ +++++.++|.+.+...
T Consensus 144 ~~~~~~rl~~~~~~~~~~~~--~d~vI~n~---~~e~~~~~i~~~l~~~ 187 (207)
T 2j41_A 144 DEKIQSRINEARKEVEMMNL--YDYVVVND---EVELAKNRIQCIVEAE 187 (207)
T ss_dssp ------------CGGGGGGG--CSEEEECS---SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccc--CCEEEECC---CHHHHHHHHHHHHHHh
Confidence 34566666554332223222 34677764 6999999999988643
No 102
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.14 E-value=7.8e-12 Score=93.58 Aligned_cols=98 Identities=19% Similarity=0.180 Sum_probs=49.6
Q ss_pred HHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCH
Q 039424 74 ASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTW 153 (203)
Q Consensus 74 ~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~ 153 (203)
+...+..+..+|+|.... ....+.+ ........|++.+++.+++.+|+.+|+.. +.
T Consensus 111 i~~~~~~~~~vild~~~~---g~~~~~~---~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~------------------~~ 166 (231)
T 3lnc_A 111 LEDNVDKGVSTLLVIDWQ---GAFKFME---MMREHVVSIFIMPPSMEELRRRLCGRRAD------------------DS 166 (231)
T ss_dssp HHHHHHHTCEEEEECCHH---HHHHHHH---HSGGGEEEEEEECSCHHHHHHC---------------------------
T ss_pred HHHHHHcCCeEEEEcCHH---HHHHHHH---hcCCCeEEEEEECCcHHHHHHHHHHcCCC------------------CH
Confidence 344456688899986422 1122222 12123456666666777999999988543 44
Q ss_pred HHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 154 RDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 154 e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+.++++.+.+...+.. ..+++|+++ +++++.+++...+..
T Consensus 167 ~~i~~rl~~~~~~~~~~~--~~d~vI~n~---~~e~~~~~l~~~i~~ 208 (231)
T 3lnc_A 167 EVVEARLKGAAFEISHCE--AYDYVIVNE---DIEETADRISNILRA 208 (231)
T ss_dssp -----CHHHHHHHHTTGG--GSSEEEECS---SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhc--CCeEEEECc---CHHHHHHHHHHHHHH
Confidence 556666655433222222 245778754 599999999888764
No 103
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=99.05 E-value=6.1e-11 Score=88.73 Aligned_cols=76 Identities=9% Similarity=-0.019 Sum_probs=33.3
Q ss_pred CeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHhh-hhcCCC-CCC-CCCCCeEEEecCCC
Q 039424 108 AGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLLE-GYCGCT-EYD-VGDVPKLTVDTTAS 184 (203)
Q Consensus 108 ~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~-~~~-~~~~~~~~id~~~~ 184 (203)
.|..+|+|++++ +++.+|+..|++.. + ..... .+.++++ .|.... .|+ ......++||++.
T Consensus 146 ~pD~vi~Ld~~~-e~~~~Ri~~R~r~~----------e---~~~~~-~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~- 209 (230)
T 2vp4_A 146 QADLIIYLRTSP-EVAYERIRQRARSE----------E---SCVPL-KYLQELHELHEDWLIHQRRPQSCKVLVLDADL- 209 (230)
T ss_dssp CCSEEEEEECCH-HHHHHHHHHHCCGG----------G---TTCCH-HHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC-
T ss_pred CCCEEEEEeCCH-HHHHHHHHHcCCcc----------c---ccCcH-HHHHHHHHHHHHHHHHhcccCCCCEEEEECCC-
Confidence 355789999866 58999998885431 0 00111 2333333 232221 222 2223468999999
Q ss_pred CChHHHHHHHHHHHhc
Q 039424 185 VGFQELVSNVIEFILH 200 (203)
Q Consensus 185 ~~~~e~~~~i~~~i~~ 200 (203)
+++++.++|.+.+..
T Consensus 210 -~~eev~~~I~~~l~~ 224 (230)
T 2vp4_A 210 -NLENIGTEYQRSESS 224 (230)
T ss_dssp ----------------
T ss_pred -CHHHHHHHHHHHHHH
Confidence 999999999988764
No 104
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=99.04 E-value=2.4e-12 Score=95.03 Aligned_cols=111 Identities=13% Similarity=-0.010 Sum_probs=57.0
Q ss_pred HHHHhhCCCcEEEeCCCCch--------------HhHHHHHHHHH---hhCCeEEEEEecCCCHHHHHHHHHhcCCCCCC
Q 039424 74 ASTQLKLGVSVVVDSPLSRR--------------AHLEKLVKLAG---EMRAGLVIVECKPSDEAEWRRRLEGRGNEGGC 136 (203)
Q Consensus 74 ~~~~l~~~~~vIid~~~~~~--------------~~~~~~~~~~~---~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~ 136 (203)
+...+..+..||+|+..... ...+.+..+.. ....+..+|+|.+++ +++.+|+..|.... .
T Consensus 81 i~~~l~~g~~vi~D~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~l~~~~-~~~~~R~~~R~~~~-~ 158 (214)
T 1gtv_A 81 IQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQRIEFARLGLPKPDWQVLLAVSA-ELAGERSRGRAQRD-P 158 (214)
T ss_dssp HHHEEEEEEEEEEEEEEHHHHHHHHHHEEEEEEEHHHHHHHHHHEEEEECCBCEEEEEEEEEH-HHHHHHHHHHHHEB-B
T ss_pred HHHHhhCCCEEEECCCcccchhhhhcccCccccHHHHHHHHhcccccccCCCCCEEEEEeCCH-HHHHHHHHcccccc-c
Confidence 44555667889999854221 01122222210 111456688888765 58999999886420 0
Q ss_pred CccCCCCCCCCCCCCCHHHHHHHhh-hhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHH
Q 039424 137 GVVGDDRPSSWHKPSTWRDLERLLE-GYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIE 196 (203)
Q Consensus 137 ~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~ 196 (203)
+...+ ..+....+.+++. .|..+...+. ....++||+++ +++++.++|.+
T Consensus 159 ~~~~d-------~~e~~~~~~~~~~~~~~~~~~~~~-~~~~~vId~~~--~~~~v~~~i~~ 209 (214)
T 1gtv_A 159 GRARD-------NYERDAELQQRTGAVYAELAAQGW-GGRWLVVGADV--DPGRLAATLAP 209 (214)
T ss_dssp EEEEE-------EEEEEHHHHHHHHHHHHHHHHEEE-EEEEEEEEEEE--BHHHHHHHHC-
T ss_pred ccccc-------cccccHHHHHHHHHHHHHHHHhCC-CCCEEEEeCCC--CHHHHHHHhcC
Confidence 00000 0001123444433 3432222111 12458999999 99999988864
No 105
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.03 E-value=2.3e-09 Score=76.43 Aligned_cols=111 Identities=23% Similarity=0.303 Sum_probs=75.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHHhhC
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQLKL 80 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 80 (203)
|+|++||||||+++.+. .+..+++.|.++..+.+ .+.. ..+....++.+.......+..
T Consensus 14 l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~g~~~~--------~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 72 (171)
T 4gp7_A 14 LIGSSGSGKSTFAKKHF--KPTEVISSDFCRGLMSD--------DEND-----------QTVTGAAFDVLHYIVSKRLQL 72 (171)
T ss_dssp EECCTTSCHHHHHHHHS--CGGGEEEHHHHHHHHCS--------STTC-----------GGGHHHHHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHc--cCCeEEccHHHHHHhcC--------cccc-----------hhhHHHHHHHHHHHHHHHHhC
Confidence 57999999999999864 35777888877543221 1110 011112233333444455667
Q ss_pred CCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCC
Q 039424 81 GVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNE 133 (203)
Q Consensus 81 ~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~ 133 (203)
+..+++|..+.....+.+...+++....++.+++++.|. ..+-.|...|...
T Consensus 73 g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt-~~Ld~~~~~R~~~ 124 (171)
T 4gp7_A 73 GKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPE-KVCQERNKNRTDR 124 (171)
T ss_dssp TCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCH-HHHHHHHHTCSSC
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCH-HHHHHHHhcccCC
Confidence 888999998777777777778888888888899998654 5888888888643
No 106
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=99.00 E-value=1e-09 Score=82.56 Aligned_cols=75 Identities=20% Similarity=0.124 Sum_probs=43.0
Q ss_pred CeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCHHHHHHHhhhhcCCCC---------CCCCCCCeEE
Q 039424 108 AGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTWRDLERLLEGYCGCTE---------YDVGDVPKLT 178 (203)
Q Consensus 108 ~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~---------~~~~~~~~~~ 178 (203)
.|..+|+|++++ +++.+|+..|++.. ......+.+.+....|..... ++ .....++
T Consensus 149 ~pd~~i~l~~~~-~~~~~R~~~R~r~~-------------e~~~~~~~~~~v~~~y~~~~~~~~~p~~~~~~-~~~~~~~ 213 (241)
T 2ocp_A 149 TLHGFIYLQASP-QVCLKRLYQRAREE-------------EKGIELAYLEQLHGQHEAWLIHKTTKLHFEAL-MNIPVLV 213 (241)
T ss_dssp CCCEEEEEECCH-HHHHHHHHHSCCTT-------------TTTCCHHHHHHHHHHHHHHHTSCCSCCCCTTG-GGCCEEE
T ss_pred CCCEEEEEECCH-HHHHHHHHhcCCcc-------------cccCCHHHHHHHHHHHHHHHhhcccccccccc-CCCCEEE
Confidence 566789999866 58999999886532 011123333333333332111 11 2236789
Q ss_pred EecCCCCChHHHHHHHHHHHh
Q 039424 179 VDTTASVGFQELVSNVIEFIL 199 (203)
Q Consensus 179 id~~~~~~~~e~~~~i~~~i~ 199 (203)
||++. +++++.+.+...+.
T Consensus 214 Id~~~--~~~~v~~~i~~i~~ 232 (241)
T 2ocp_A 214 LDVND--DFSEEVTKQEDLMR 232 (241)
T ss_dssp EECCS--CTTTCHHHHHHHHH
T ss_pred EECCC--ChhhCHHHHHHHHH
Confidence 99998 77776655555443
No 107
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.94 E-value=3.7e-09 Score=78.41 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=62.0
Q ss_pred HHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCC
Q 039424 73 IASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPST 152 (203)
Q Consensus 73 ~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~ 152 (203)
.+...+..|..+|+| ........+.+... .. ..|++.+++.+.+.+|+..|+. ++
T Consensus 100 ~v~~~l~~G~illLD---LD~~~~~~i~~~l~---~~-~tI~i~th~~~~l~~Rl~~rG~------------------~~ 154 (219)
T 1s96_A 100 AIEQVLATGVDVFLD---IDWQGAQQIRQKMP---HA-RSIFILPPSKIELDRRLRGRGQ------------------DS 154 (219)
T ss_dssp HHHHHHTTTCEEEEE---CCHHHHHHHHHHCT---TC-EEEEEECSSHHHHHHHHHTTSC------------------SC
T ss_pred HHHHHHhcCCeEEEE---ECHHHHHHHHHHcc---CC-EEEEEECCCHHHHHHHHHHcCC------------------CC
Confidence 455677889999999 44455555555443 22 3455555566689999988763 26
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 153 WRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 153 ~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+++.+|+........+.. ..+.+|.+ . ++++..+++.+.+..
T Consensus 155 ~e~i~~rl~~a~~e~~~~~--~~d~~i~N-d--~l~~a~~~l~~ii~~ 197 (219)
T 1s96_A 155 EEVIAKRMAQAVAEMSHYA--EYDYLIVN-D--DFDTALTDLKTIIRA 197 (219)
T ss_dssp HHHHHHHHHHHHHHHTTGG--GSSEEEEC-S--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcc--CCCEEEEC-c--CHHHHHHHHHHHHHH
Confidence 6888887765421112211 23356666 5 699999999888853
No 108
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.94 E-value=2e-09 Score=81.21 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=26.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc----------eechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIP----------LIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~----------~i~~d~~~~ 32 (203)
|+|++||||||+++.|+..+|.. +++.|.++.
T Consensus 30 I~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~ 71 (245)
T 2jeo_A 30 VSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYK 71 (245)
T ss_dssp EECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBC
T ss_pred EECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCcc
Confidence 57999999999999999888865 577776544
No 109
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.90 E-value=2.4e-09 Score=83.86 Aligned_cols=30 Identities=33% Similarity=0.593 Sum_probs=28.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|+||+||||||++..||++++..+||+|..
T Consensus 45 I~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 45 LMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred EECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 579999999999999999999999999987
No 110
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.86 E-value=5.8e-10 Score=80.20 Aligned_cols=21 Identities=14% Similarity=0.423 Sum_probs=18.7
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|+||+||||||+++.|+..+.
T Consensus 10 i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 10 LLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EECCTTSSHHHHHHHHHHHCT
T ss_pred EECCCCCCHHHHHHHHHhhCC
Confidence 579999999999999998763
No 111
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.84 E-value=2.2e-08 Score=73.55 Aligned_cols=32 Identities=34% Similarity=0.544 Sum_probs=28.6
Q ss_pred CCCCCCCChHHHHHHHHHhCC--CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASALK--IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~--~~~i~~d~~~~ 32 (203)
|+|++||||||+++.|+..++ +.+++.|.+..
T Consensus 11 i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~ 44 (211)
T 3asz_A 11 IAGGTASGKTTLAQALARTLGERVALLPMDHYYK 44 (211)
T ss_dssp EEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBC
T ss_pred EECCCCCCHHHHHHHHHHHhCCCeEEEecCcccc
Confidence 579999999999999999888 88999988754
No 112
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.80 E-value=1.9e-08 Score=73.35 Aligned_cols=100 Identities=12% Similarity=0.078 Sum_probs=56.6
Q ss_pred HHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCC
Q 039424 73 IASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPST 152 (203)
Q Consensus 73 ~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~ 152 (203)
.+.+.+..+..+++|.. ...... .... ......+++..|+..++.+|+..|+.. +
T Consensus 87 ~i~~~~~~~~~~~~~~~---~~g~~~---~~~~-~~~~~~~~l~~p~~~ilde~~~~~d~~------------------~ 141 (198)
T 1lvg_A 87 AVRAVQAMNRICVLDVD---LQGVRS---IKKT-DLCPIYIFVQPPSLDVLEQRLRLRNTE------------------T 141 (198)
T ss_dssp HHHHHHHTTCEEEEECC---HHHHHH---HTTS-SCCCEEEEEECSCHHHHHHHHHHHTCS------------------C
T ss_pred HHHHHHHcCCcEEEECC---HHHHHH---HHhc-CCCcEEEEEeCCCHHHHHHHHHhcCCC------------------C
Confidence 34445566766777642 111121 1111 223445677777777899999998653 6
Q ss_pred HHHHHHHhhhhcCCCCCC-CCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 153 WRDLERLLEGYCGCTEYD-VGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 153 ~e~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.+.+.+++........+. .....+.+|.+.+ +++..++|.+.+..
T Consensus 142 e~~i~~~l~~~~~~~~~a~~~~~~D~iivnd~---le~a~~~l~~ii~~ 187 (198)
T 1lvg_A 142 EESLAKRLAAARTDMESSKEPGLFDLVIINDD---LDKAYATLKQALSE 187 (198)
T ss_dssp HHHHHHHHHHHHHHTTGGGSTTTCSEEEECSS---HHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCCceEEEECCC---HHHHHHHHHHHHHH
Confidence 677777765542111111 1122445666544 88999998887753
No 113
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.79 E-value=1e-08 Score=74.55 Aligned_cols=166 Identities=10% Similarity=0.027 Sum_probs=83.0
Q ss_pred CCCCCCCChHHHHHHHHHhCC---CceechhhHhhhhhhhhhhhhccCC--CccccchHHHHHhhhh---hhhhHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK---IPLIDKDDVRDCTLSLQQTLQKTTP--HHQHATSAAAAASSLL---NDLSYDVIWK 72 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~---~~~i~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~~~~~l~~ 72 (203)
|+|.|||||+|+|+.|.+.+| ++++++.+..+..+....++..... ..............|. .......+..
T Consensus 16 itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d~~~~~~ 95 (202)
T 3ch4_B 16 FSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQADPGFFCR 95 (202)
T ss_dssp EEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHCTTTTHH
T ss_pred EECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 579999999999999998784 6788988876532211111000000 0000000000000010 0000000011
Q ss_pred HHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCC
Q 039424 73 IASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPST 152 (203)
Q Consensus 73 ~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~ 152 (203)
.+...+ ....||||+.... ...+.|++.. +..+.+|.+.+++ ++..+|.-.+... .++.
T Consensus 96 ~~~~~~-~~~~vII~dvR~~-~Ev~~fr~~~---g~~~~iirI~as~-~~R~~Rg~~~~~~---------------~Dd~ 154 (202)
T 3ch4_B 96 KIVEGI-SQPIWLVSDTRRV-SDIQWFREAY---GAVTQTVRVVALE-QSRQQRGWVFTPG---------------VDDA 154 (202)
T ss_dssp HHSBTC-CCSEEEECCCCSH-HHHHHHHHHH---GGGEEEEEEEECH-HHHHHTTCCCCTT---------------TTTS
T ss_pred HHHHhc-CCCcEEEeCCCCH-HHHHHHHHhC---CCcEEEEEEECCH-HHHHHHhhhcccc---------------cccc
Confidence 111111 2346899986554 3446655443 4346788888765 4788883222111 1111
Q ss_pred HHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 153 WRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 153 ~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
.. + ..+..+ +..+++|+|++ +.+++.+++...+..
T Consensus 155 es--E------~gL~~~---~~~D~vI~Ndg--t~eel~~~v~~ll~~ 189 (202)
T 3ch4_B 155 ES--E------CGLDNF---GDFDWVIENHG--VEQRLEEQLENLIEF 189 (202)
T ss_dssp HH--H------HTTTTC---CCCSEEEEECS--CHHHHHHHHHHHHHH
T ss_pred cc--c------cCCCCC---CcCCEEEEeCC--CHHHHHHHHHHHHHH
Confidence 11 1 111222 23668999999 999998888776653
No 114
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.70 E-value=4.6e-08 Score=76.27 Aligned_cols=30 Identities=40% Similarity=0.525 Sum_probs=28.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|+||+||||||+|+.|++.++..+++.|.+
T Consensus 10 i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 10 LMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred EECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 579999999999999999999999999976
No 115
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.59 E-value=7.2e-08 Score=79.69 Aligned_cols=29 Identities=10% Similarity=0.218 Sum_probs=25.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCC-------ceechhh
Q 039424 1 MKGHPGTGKSTLADAIASALKI-------PLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~-------~~i~~d~ 29 (203)
|+|+|||||||+|+.|+++|+. .+++.|.
T Consensus 400 l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 400 LGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp ECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 5899999999999999999986 5677665
No 116
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.57 E-value=4.9e-08 Score=70.99 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.9
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.||+||||||+++.|.+.+.
T Consensus 24 l~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 24 LIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EECCTTSSHHHHHHHHHHHCT
T ss_pred EECcCCCCHHHHHHHHHhhCC
Confidence 579999999999999998764
No 117
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.52 E-value=1.3e-06 Score=65.48 Aligned_cols=31 Identities=26% Similarity=0.195 Sum_probs=27.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~~ 31 (203)
|+|++||||||+|+.|++.+|+++++.++..
T Consensus 6 ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~ 36 (241)
T 1dek_A 6 LSGVKRSGKDTTADFIMSNYSAVKYQLAGPI 36 (241)
T ss_dssp EECCTTSSHHHHHHHHHHHSCEEECCTTHHH
T ss_pred EECCCCCCHHHHHHHHHHhcCCeEEecChHH
Confidence 5899999999999999988999999987653
No 118
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.52 E-value=8.6e-08 Score=70.34 Aligned_cols=30 Identities=40% Similarity=0.730 Sum_probs=24.7
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~ 30 (203)
|.|++||||||+++.|+..+. ..+++.|..
T Consensus 27 I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 27 LSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp EECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred EECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 579999999999999998874 456777665
No 119
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.51 E-value=1.5e-07 Score=73.26 Aligned_cols=31 Identities=32% Similarity=0.459 Sum_probs=25.9
Q ss_pred CCCCCCCChHHHHHHHHHhCC-------CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASALK-------IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-------~~~i~~d~~~ 31 (203)
|+|++||||||+++.|+..++ +.++++|...
T Consensus 85 I~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 85 IAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp EEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 579999999999999998765 5677878764
No 120
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.45 E-value=7.7e-08 Score=70.23 Aligned_cols=32 Identities=31% Similarity=0.487 Sum_probs=24.6
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCc--eechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIP--LIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~--~i~~d~~~~ 32 (203)
|+|++||||||+++.|+..+ +.. +++.|.+..
T Consensus 27 i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 27 IDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred EECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 57999999999999999865 433 456676643
No 121
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.41 E-value=3.1e-07 Score=71.69 Aligned_cols=31 Identities=26% Similarity=0.419 Sum_probs=25.8
Q ss_pred CCCCCCCChHHHHHHHHHhCC-------CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASALK-------IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-------~~~i~~d~~~ 31 (203)
|+|++||||||+++.|+..++ ..+++.|.++
T Consensus 97 I~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 97 IAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp EECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 579999999999999998764 4568888874
No 122
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=98.32 E-value=2.9e-06 Score=66.47 Aligned_cols=22 Identities=41% Similarity=0.428 Sum_probs=19.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCC
Q 039424 1 MKGHPGTGKSTLADAIASALKI 22 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~ 22 (203)
|.|+.||||||+++.|++.++.
T Consensus 12 ~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 12 LDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EECSTTSSHHHHHHHHHSGGGC
T ss_pred EECCCCCCHHHHHHHHHHHhcc
Confidence 5799999999999999998854
No 123
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.30 E-value=6.3e-08 Score=74.79 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=26.4
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~~~ 32 (203)
|+|++||||||+|+.|++.++ +.++++|++++
T Consensus 10 ItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 10 VTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp EESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred EECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 589999999999999998887 78999999975
No 124
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.25 E-value=2.9e-06 Score=65.33 Aligned_cols=103 Identities=13% Similarity=0.122 Sum_probs=61.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc---eechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKIP---LIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQ 77 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~---~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (203)
|.|..||||||+.+.|.+.++-. ++.... |... .. . ...++......
T Consensus 91 fEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~----------------Pt~e------E~-~-------~~yl~R~~~~L 140 (304)
T 3czq_A 91 FEGRDAAGKGGAIHATTANMNPRSARVVALTK----------------PTET------ER-G-------QWYFQRYVATF 140 (304)
T ss_dssp EEESTTSSHHHHHHHHHTTSCTTTEEEEECCS----------------CCHH------HH-T-------SCTTHHHHTTC
T ss_pred EeCCCCCCHHHHHHHHHHHhcccCCeEEEeCC----------------cChH------HH-h-------chHHHHHHHhc
Confidence 46999999999999999988533 333221 2100 00 0 01122222222
Q ss_pred hhCCCcEEEeCCC------------Cch-HhHH---H---HHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCC
Q 039424 78 LKLGVSVVVDSPL------------SRR-AHLE---K---LVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEG 134 (203)
Q Consensus 78 l~~~~~vIid~~~------------~~~-~~~~---~---~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~ 134 (203)
-..|..+|+|.+. ... ++.. . |..++...|.+.+.++|+.+++ +..+|+..|..++
T Consensus 141 P~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~e-eq~kR~~~R~~dp 215 (304)
T 3czq_A 141 PTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGRE-MQLKRFHDRRHDP 215 (304)
T ss_dssp CCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHH-HHHHHHHHHHHCT
T ss_pred ccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHH-HHHHHHHHhhcCc
Confidence 2678889999831 111 1112 2 2224455689999999998765 7999998885543
No 125
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.22 E-value=1.5e-06 Score=64.14 Aligned_cols=101 Identities=11% Similarity=0.055 Sum_probs=53.1
Q ss_pred HHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCCCCH
Q 039424 74 ASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKPSTW 153 (203)
Q Consensus 74 ~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~ 153 (203)
+...+..+..+++|... .....++.... ......+++..++...+.+|+.+|... +.
T Consensus 107 i~~~l~~~~~~il~~~l---sggq~qR~~i~--~~~~~~~ll~~~~~~~Lde~~~~~d~~------------------~~ 163 (218)
T 1z6g_A 107 YDKAKEQNKICLFEMNI---NGVKQLKKSTH--IKNALYIFIKPPSTDVLLSRLLTRNTE------------------NQ 163 (218)
T ss_dssp HHHHHHTTCEEEEEECH---HHHHHHTTCSS--CCSCEEEEEECSCHHHHHHHHHHTCCC------------------CH
T ss_pred HHHHHhCCCcEEEEecH---HHHHHHHHHhc--CCCcEEEEEeCcCHHHHHHHHHhcCCC------------------CH
Confidence 44555667777777322 11122111110 012245667666777899999988643 56
Q ss_pred HHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 154 RDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 154 e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
+.+.+++........+......+.+|.+ . ++++....+...+..
T Consensus 164 ~~i~~~l~~~~~~~~~~h~~~~d~iiv~-~--~~~ea~~~~~~ii~~ 207 (218)
T 1z6g_A 164 EQIQKRMEQLNIELHEANLLNFNLSIIN-D--DLTLTYQQLKNYLLN 207 (218)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSEEEEC-S--SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccCCCEEEEC-C--CHHHHHHHHHHHHHH
Confidence 7777766543211111100113345544 4 588888888877754
No 126
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.17 E-value=3.8e-07 Score=71.57 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=30.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH--hhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV--RDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~--~~~ 33 (203)
|+||+||||||+|+.|++.++..+|++|.+ ++.
T Consensus 12 I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~ 46 (340)
T 3d3q_A 12 IVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQG 46 (340)
T ss_dssp EECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTT
T ss_pred EECCCcCcHHHHHHHHHHHcCCceecccccccccc
Confidence 579999999999999999999999999987 544
No 127
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.14 E-value=2.6e-05 Score=55.45 Aligned_cols=33 Identities=33% Similarity=0.384 Sum_probs=25.2
Q ss_pred CCCCCCCChHHHHHHHHHhC----C--CceechhhHhhh
Q 039424 1 MKGHPGTGKSTLADAIASAL----K--IPLIDKDDVRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~--~~~i~~d~~~~~ 33 (203)
|.|+||+||||+++.++..+ | +.+++..++...
T Consensus 43 l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 43 FVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp ECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 57999999999999998766 4 345666666544
No 128
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=98.02 E-value=1.1e-05 Score=63.23 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=17.0
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|+.||||||+++.|++.++
T Consensus 9 ~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 9 IDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp ECSCTTSSHHHHHHHHTC---
T ss_pred EECCCCCCHHHHHHHHHHHhh
Confidence 579999999999999998874
No 129
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.00 E-value=2.6e-06 Score=68.19 Aligned_cols=33 Identities=30% Similarity=0.437 Sum_probs=29.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhh--Hhhh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDD--VRDC 33 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~--~~~~ 33 (203)
|.||+||||||++..|++.++..+|++|. +++.
T Consensus 7 i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~ 41 (409)
T 3eph_A 7 IAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKD 41 (409)
T ss_dssp EEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSS
T ss_pred EECcchhhHHHHHHHHHHHCCCeEeecCccceecc
Confidence 57999999999999999999999999987 4554
No 130
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=97.96 E-value=1.9e-05 Score=62.73 Aligned_cols=21 Identities=24% Similarity=0.393 Sum_probs=17.1
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|+.||||||+++.|++.++
T Consensus 54 ~EG~dGsGKTT~~~~Lae~L~ 74 (376)
T 1of1_A 54 IDGPHGMGKTTTTQLLVALGS 74 (376)
T ss_dssp ECSSTTSSHHHHHHHHHC---
T ss_pred EECCCCCCHHHHHHHHHHHhh
Confidence 579999999999999998874
No 131
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.94 E-value=2.3e-06 Score=66.30 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=28.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|.||+||||||++..|++.++..+|+.|..
T Consensus 8 i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 8 IVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred EECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 579999999999999999999999999976
No 132
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=97.93 E-value=1.6e-05 Score=62.47 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.6
Q ss_pred CCCCCCCChHHHH-HHHHHhCCC
Q 039424 1 MKGHPGTGKSTLA-DAIASALKI 22 (203)
Q Consensus 1 i~G~pGsGKST~a-~~L~~~~~~ 22 (203)
|.|+.||||||++ +.|++.++.
T Consensus 17 iEG~~GaGKTT~~~~~L~~~l~~ 39 (341)
T 1osn_A 17 LDGAYGIGKTTAAEEFLHHFAIT 39 (341)
T ss_dssp EEESSSSCTTHHHHHHHHTTTTS
T ss_pred EeCCCCCCHHHHHHHHHHHHHhh
Confidence 5799999999999 999988764
No 133
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.92 E-value=2.5e-06 Score=65.95 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=27.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|+||+||||||+|..|++.++..+|+.|..
T Consensus 15 i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 15 LMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp EECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred EECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 579999999999999999999999998864
No 134
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.87 E-value=3.1e-05 Score=63.80 Aligned_cols=103 Identities=13% Similarity=0.109 Sum_probs=59.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCC---ceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALKI---PLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQ 77 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~---~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (203)
|.|..||||+|+.+.|.+.++- .++..... ... +. . ...++......
T Consensus 48 fEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~P----------------t~~------E~-~-------~~yl~R~~~~l 97 (500)
T 3czp_A 48 INGIEGAGKGETVKLLNEWMDPRLIEVQSFLRP----------------SDE------EL-E-------RPPQWRFWRRL 97 (500)
T ss_dssp EEECTTSSHHHHHHHHHHHSCGGGEEEEECSSC----------------CHH------HH-T-------SCTTHHHHHHC
T ss_pred EeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCC----------------Chh------hc-c-------CChhhhHHHhC
Confidence 4699999999999999999853 33332211 100 00 0 01123333344
Q ss_pred hhCCCcEEEeCC------------CCchH-------hHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCC
Q 039424 78 LKLGVSVVVDSP------------LSRRA-------HLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEG 134 (203)
Q Consensus 78 l~~~~~vIid~~------------~~~~~-------~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~ 134 (203)
-..|..+|.|.+ ..... +...|..++...|.+++.++|+.+. +...+|+..|..+|
T Consensus 98 P~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~-eeq~kRl~~R~~~p 172 (500)
T 3czp_A 98 PPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSK-KQLKERLKALEKDP 172 (500)
T ss_dssp CCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCH-HHHHHCC-------
T ss_pred CCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCH-HHHHHHHHHHhcCC
Confidence 456888888873 12222 2223334466778999999999766 58999999997654
No 135
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.86 E-value=3.6e-05 Score=63.42 Aligned_cols=103 Identities=12% Similarity=0.127 Sum_probs=64.0
Q ss_pred CCCCCCCChHHHHHHHHHhCC---CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK---IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQ 77 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~---~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (203)
|.|..||||+|+.+.|.+.++ +.++..... ... +. ....++......
T Consensus 305 fEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~P----------------t~~------E~--------~~~yl~R~~~~l 354 (500)
T 3czp_A 305 FEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAP----------------TEE------ER--------AQPYLWRFWRHI 354 (500)
T ss_dssp EEESTTSCHHHHHHHHHTTSCGGGCEEEECCSC----------------CHH------HH--------TSCTTHHHHTTC
T ss_pred EeccCCCCHHHHHHHHHHhcCccCCeEEEeCCC----------------Chh------hh--------cchHHHHHHHhC
Confidence 469999999999999999885 444443222 100 00 001123333333
Q ss_pred hhCCCcEEEeCCCC------------chH-------hHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCC
Q 039424 78 LKLGVSVVVDSPLS------------RRA-------HLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEG 134 (203)
Q Consensus 78 l~~~~~vIid~~~~------------~~~-------~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~ 134 (203)
-..|..+|.|.+-. ..+ +...|..++...|.+++.++|+.+. ++..+|+..|..+|
T Consensus 355 P~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~Kf~L~is~-eeQ~~R~~~R~~~p 429 (500)
T 3czp_A 355 PARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEEQLSEYGIIVVKFWLAIDK-QTQMERFKEREKTP 429 (500)
T ss_dssp CCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTEEEEEEEEECCH-HHHHHHHHHHHHSS
T ss_pred CCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhhCCCeEEEEEEECCH-HHHHHHHHHHhcCC
Confidence 35688899998411 112 2223334466778999999999766 58999999997654
No 136
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.79 E-value=5.2e-06 Score=64.07 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=24.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee--chhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI--DKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i--~~d~~ 30 (203)
|.||||+|||++|+.+|+.++.+++ +...+
T Consensus 41 l~GppGtGKT~la~aiA~~l~~~~i~v~~~~l 72 (293)
T 3t15_A 41 IWGGKGQGKSFQCELVFRKMGINPIMMSAGEL 72 (293)
T ss_dssp EEECTTSCHHHHHHHHHHHHTCCCEEEEHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEEeHHHh
Confidence 4699999999999999999987654 44444
No 137
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=97.78 E-value=2.5e-05 Score=60.15 Aligned_cols=99 Identities=13% Similarity=-0.006 Sum_probs=59.2
Q ss_pred HHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCC
Q 039424 71 WKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKP 150 (203)
Q Consensus 71 ~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 150 (203)
.+.+.+.+..|..+|+|.... ....++ . .....++|++.+|..+.+++|+..|+.
T Consensus 179 ~~~V~~~~~~gk~viLdid~q---g~~~lk---~-~~~~pi~IFI~PpS~e~L~~r~~~r~~------------------ 233 (292)
T 3tvt_A 179 VASVREVAEKGKHCILDVSGN---AIKRLQ---V-AQLYPVAVFIKPKSVDSVMEMNRRMTE------------------ 233 (292)
T ss_dssp HHHHHHHHHHTCEEEECCCTH---HHHHHH---H-TTCCCEEEEECCSCHHHHHHTCTTSCT------------------
T ss_pred hHHHHHHHHcCCcEEEeccch---hhhhcc---c-ccccceEEEEECCCHHHHHHHHhCCCc------------------
Confidence 445667788899999997532 222322 2 233446788887777788877665533
Q ss_pred CCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 151 STWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 151 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
++.+.+..+....+ .++... -+.+|.++ ++++.+++|.+.|...
T Consensus 234 e~~~~~~~r~~k~e--~e~~~~--fD~vIvNd---dle~a~~~l~~iI~~e 277 (292)
T 3tvt_A 234 EQAKKTYERAIKME--QEFGEY--FTGVVQGD---TIEEIYSKVKSMIWSQ 277 (292)
T ss_dssp THHHHHHHHHHHHH--HHHTTT--CSEEECCS---SHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH--Hhhhhh--CCEEEECc---CHHHHHHHHHHHHHHh
Confidence 24455555543321 111111 23566544 5999999999988753
No 138
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.76 E-value=7.6e-05 Score=57.58 Aligned_cols=20 Identities=50% Similarity=0.798 Sum_probs=18.4
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+|+.+++.+
T Consensus 72 l~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 72 FTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp EEECTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999887
No 139
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.75 E-value=3.5e-05 Score=56.96 Aligned_cols=32 Identities=16% Similarity=0.101 Sum_probs=24.4
Q ss_pred CCCCCCCChHHHHHHHHHhCC-----CceechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASALK-----IPLIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-----~~~i~~d~~~~ 32 (203)
|.|+||+||||+++.+++.++ +.+++..++..
T Consensus 57 l~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~ 93 (242)
T 3bos_A 57 LWGPVKSGRTHLIHAACARANELERRSFYIPLGIHAS 93 (242)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGG
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 579999999999999988763 34566655543
No 140
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.74 E-value=8.9e-06 Score=61.35 Aligned_cols=27 Identities=52% Similarity=0.796 Sum_probs=23.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.|+||+||||+++.++..++.+++..
T Consensus 50 l~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 50 MVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred EECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 579999999999999999988765543
No 141
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.73 E-value=2.8e-06 Score=66.95 Aligned_cols=24 Identities=33% Similarity=0.675 Sum_probs=22.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCce
Q 039424 1 MKGHPGTGKSTLADAIASALKIPL 24 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~ 24 (203)
|.|+|||||||+++.|++.+++++
T Consensus 29 l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 29 LVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHHhCCCe
Confidence 479999999999999999999888
No 142
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.70 E-value=9.5e-06 Score=65.72 Aligned_cols=27 Identities=41% Similarity=0.661 Sum_probs=23.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+|||++|+.+|..++++++..
T Consensus 211 L~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 211 LYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp EESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 479999999999999999999887554
No 143
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.68 E-value=1.4e-05 Score=63.43 Aligned_cols=28 Identities=36% Similarity=0.665 Sum_probs=24.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d 28 (203)
|.||||+||||+|+.|++.++.+++..+
T Consensus 56 l~GppGtGKT~la~~ia~~~~~~~~~~~ 83 (363)
T 3hws_A 56 LIGPTGSGKTLLAETLARLLDVPFTMAD 83 (363)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHcCCCEEEec
Confidence 4799999999999999999998876553
No 144
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.68 E-value=1.6e-05 Score=60.27 Aligned_cols=27 Identities=41% Similarity=0.749 Sum_probs=23.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.|+||+||||+|+.++..++.+++..
T Consensus 49 l~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 49 LVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred EECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 689999999999999999988765543
No 145
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.67 E-value=0.00011 Score=59.72 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=24.0
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~ 31 (203)
++|++||||||++..|+..+ | ..+++.|..+
T Consensus 105 ivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 105 MVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp EECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred EECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 47999999999999998765 3 3457777654
No 146
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=1.1e-05 Score=65.33 Aligned_cols=27 Identities=41% Similarity=0.582 Sum_probs=23.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+|||++|+.+|..++++++..
T Consensus 220 LyGPPGTGKTllAkAiA~e~~~~f~~v 246 (434)
T 4b4t_M 220 MYGPPGTGKTLLARACAAQTNATFLKL 246 (434)
T ss_dssp EESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EECcCCCCHHHHHHHHHHHhCCCEEEE
Confidence 469999999999999999999886544
No 147
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=1.1e-05 Score=65.36 Aligned_cols=27 Identities=41% Similarity=0.630 Sum_probs=23.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+|||++|+.+|..++++++..
T Consensus 220 L~GPPGtGKTllAkAiA~e~~~~~~~v 246 (437)
T 4b4t_L 220 LYGPPGTGKTLLAKAVAATIGANFIFS 246 (437)
T ss_dssp EESCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 479999999999999999999886543
No 148
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.67 E-value=1.1e-05 Score=64.58 Aligned_cols=27 Identities=41% Similarity=0.586 Sum_probs=23.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+|||++|+.+|..++++++..
T Consensus 187 L~GPPGTGKTllAkAiA~e~~~~f~~v 213 (405)
T 4b4t_J 187 LYGPPGTGKTLLARAVAHHTDCKFIRV 213 (405)
T ss_dssp EESCSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred EeCCCCCCHHHHHHHHHHhhCCCceEE
Confidence 469999999999999999999887554
No 149
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.67 E-value=1.5e-05 Score=64.79 Aligned_cols=28 Identities=32% Similarity=0.571 Sum_probs=25.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d 28 (203)
|.||||+||||+|+.||+.++++++..+
T Consensus 55 l~GppGtGKT~lar~lA~~l~~~~~~v~ 82 (444)
T 1g41_A 55 MIGPTGVGKTEIARRLAKLANAPFIKVE 82 (444)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence 4799999999999999999998887665
No 150
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.66 E-value=1.3e-05 Score=58.08 Aligned_cols=29 Identities=34% Similarity=0.454 Sum_probs=25.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|+|++||||||+|..|+++.+ .+|+.|.+
T Consensus 39 I~GpsGsGKStLA~~La~~g~-~iIsdDs~ 67 (205)
T 2qmh_A 39 ITGDSGVGKSETALELVQRGH-RLIADDRV 67 (205)
T ss_dssp EECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred EECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence 579999999999999997765 88888866
No 151
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.65 E-value=1.5e-05 Score=60.87 Aligned_cols=25 Identities=40% Similarity=0.694 Sum_probs=21.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI 25 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i 25 (203)
|.||||+||||+++.|+..++..++
T Consensus 49 L~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 49 LAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp EESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred EECCCCCcHHHHHHHHHHHcCCCEE
Confidence 4799999999999999998876544
No 152
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.64 E-value=1.5e-05 Score=60.04 Aligned_cols=26 Identities=38% Similarity=0.791 Sum_probs=22.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|.|+||+||||+|+.+++.++.+++.
T Consensus 44 l~G~~GtGKT~la~~la~~~~~~~~~ 69 (262)
T 2qz4_A 44 LLGPPGCGKTLLAKAVATEAQVPFLA 69 (262)
T ss_dssp EESCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 47999999999999999999877653
No 153
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.63 E-value=1.7e-05 Score=61.43 Aligned_cols=27 Identities=41% Similarity=0.593 Sum_probs=23.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.|+||+||||+|+.++..++.+++..
T Consensus 54 L~Gp~GtGKT~la~ala~~~~~~~i~v 80 (301)
T 3cf0_A 54 FYGPPGCGKTLLAKAIANECQANFISI 80 (301)
T ss_dssp EECSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred EECCCCcCHHHHHHHHHHHhCCCEEEE
Confidence 579999999999999999998776543
No 154
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.62 E-value=2.1e-05 Score=60.12 Aligned_cols=26 Identities=42% Similarity=0.689 Sum_probs=22.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|.|+||+||||+++.+++.++.+++.
T Consensus 56 l~G~~GtGKT~la~~la~~~~~~~~~ 81 (285)
T 3h4m_A 56 LYGPPGTGKTLLAKAVATETNATFIR 81 (285)
T ss_dssp EESSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred EECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 57999999999999999999877644
No 155
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.62 E-value=1.8e-05 Score=60.92 Aligned_cols=26 Identities=35% Similarity=0.643 Sum_probs=22.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|.|+||+||||+|+.+++.++.+++.
T Consensus 59 l~Gp~GtGKT~la~~la~~~~~~~~~ 84 (297)
T 3b9p_A 59 LFGPPGNGKTLLARAVATECSATFLN 84 (297)
T ss_dssp EESSSSSCHHHHHHHHHHHTTCEEEE
T ss_pred EECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 47999999999999999999876543
No 156
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=2e-05 Score=64.16 Aligned_cols=27 Identities=37% Similarity=0.546 Sum_probs=23.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+|||++|+.+|..++++++..
T Consensus 248 LyGPPGTGKTlLAkAiA~e~~~~fi~v 274 (467)
T 4b4t_H 248 LYGPPGTGKTLCARAVANRTDATFIRV 274 (467)
T ss_dssp ECSCTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred eeCCCCCcHHHHHHHHHhccCCCeEEE
Confidence 579999999999999999999887544
No 157
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.58 E-value=1.9e-05 Score=60.88 Aligned_cols=32 Identities=28% Similarity=0.187 Sum_probs=26.0
Q ss_pred CCCCCCCChHHHHHHHHHhCC-------Ccee-chhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASALK-------IPLI-DKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-------~~~i-~~d~~~~ 32 (203)
|+|++||||||+++.|+..++ ...+ +.|.++.
T Consensus 36 I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~ 75 (290)
T 1odf_A 36 FSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYL 75 (290)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBC
T ss_pred EECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccC
Confidence 579999999999999998874 3445 8888753
No 158
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.58 E-value=0.00015 Score=58.87 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=23.1
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~ 30 (203)
++|++||||||++..|+..+ | +.+++.|..
T Consensus 102 lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 102 LVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp ECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 57999999999999998665 3 335666654
No 159
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.57 E-value=2.6e-05 Score=62.18 Aligned_cols=28 Identities=36% Similarity=0.652 Sum_probs=24.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d 28 (203)
|.|+||+||||+|+.|++.++.+++..+
T Consensus 77 l~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 77 LIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 4799999999999999999987776543
No 160
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.56 E-value=2.7e-05 Score=59.21 Aligned_cols=27 Identities=37% Similarity=0.656 Sum_probs=23.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.|+||+||||+|+.+++.++.+++..
T Consensus 69 l~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 69 LEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp EECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred EECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 579999999999999999988876554
No 161
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.55 E-value=2.9e-05 Score=58.36 Aligned_cols=26 Identities=42% Similarity=0.825 Sum_probs=21.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|.|+||+||||+++.++..++..++.
T Consensus 54 l~G~~G~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 54 LVGPPGVGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 57999999999999999988755443
No 162
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.54 E-value=2.2e-05 Score=63.32 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=23.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+|||++|+.+|..++++++..
T Consensus 221 LyGPPGTGKTlLAkAiA~e~~~~fi~v 247 (437)
T 4b4t_I 221 LYGAPGTGKTLLAKAVANQTSATFLRI 247 (437)
T ss_dssp EESSTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred eECCCCchHHHHHHHHHHHhCCCEEEE
Confidence 479999999999999999999887554
No 163
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=97.53 E-value=0.00016 Score=55.76 Aligned_cols=98 Identities=12% Similarity=0.159 Sum_probs=57.8
Q ss_pred HHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCC
Q 039424 71 WKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKP 150 (203)
Q Consensus 71 ~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 150 (203)
.+.+.+.+..|..+|+|.... ....+. .....| ++|++.++..+++.+ +..|+
T Consensus 184 ~~~V~~~~~~G~~vildid~~---g~~~l~---~~~~~p-i~IfI~pps~~~L~~-L~~R~------------------- 236 (295)
T 1kjw_A 184 VQSVREVAEQGKHCILDVSAN---AVRRLQ---AAHLHP-IAIFIRPRSLENVLE-INKRI------------------- 236 (295)
T ss_dssp HHHHHHHHHTTCEEEECCCTT---HHHHHH---HTTCCC-EEEEECCSSHHHHHH-HCTTS-------------------
T ss_pred HHHHHHHHhcCCeEEEEeCHH---HHHHHH---hcccCC-eEEEEECCCHHHHHH-HHhcC-------------------
Confidence 445667788899999997532 222222 112344 678888776766766 76664
Q ss_pred CCHHHHHHHhhhhcCCC-CCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 151 STWRDLERLLEGYCGCT-EYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 151 ~~~e~~~~~~~~~~~~~-~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+.+.+|++...... .+. ..-+.+|+| + ++++.+++|.+.|...
T Consensus 237 -t~~~i~~rl~~a~~~e~~~~--~~fd~vivN-d--~le~a~~~l~~ii~~~ 282 (295)
T 1kjw_A 237 -TEEQARKAFDRATKLEQEFT--ECFSAIVEG-D--SFEEIYHKVKRVIEDL 282 (295)
T ss_dssp -CHHHHHHHHHHHHHHHHHHG--GGCSEEECC-S--SHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhcc--ccCeEEEEC-c--CHHHHHHHHHHHHHhc
Confidence 2355666666542111 111 112356665 4 5999999999988643
No 164
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.52 E-value=0.00019 Score=52.03 Aligned_cols=20 Identities=50% Similarity=0.737 Sum_probs=18.1
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+++.+++.+
T Consensus 43 l~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 43 FSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999875
No 165
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.49 E-value=2.7e-05 Score=55.61 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=20.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+|++||||||+.+.|+..+++.
T Consensus 5 l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 5 ITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EECCTTSSHHHHHHHHHHHHGGG
T ss_pred EECCCCCCHHHHHHHHHHHhCCc
Confidence 57999999999999999887643
No 166
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.49 E-value=9.9e-05 Score=57.42 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=22.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
+.|+||+||||+++.+++.++..++.
T Consensus 53 ~~G~~G~GKT~la~~la~~l~~~~~~ 78 (324)
T 3u61_B 53 HSPSPGTGKTTVAKALCHDVNADMMF 78 (324)
T ss_dssp ECSSTTSSHHHHHHHHHHHTTEEEEE
T ss_pred eeCcCCCCHHHHHHHHHHHhCCCEEE
Confidence 36889999999999999999866554
No 167
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.48 E-value=3.4e-05 Score=59.46 Aligned_cols=25 Identities=36% Similarity=0.619 Sum_probs=22.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI 25 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i 25 (203)
|.|+||+||||+|+.+++.++.+++
T Consensus 55 l~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 55 MIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp EECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4799999999999999999987654
No 168
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.48 E-value=3.7e-05 Score=60.38 Aligned_cols=24 Identities=50% Similarity=0.778 Sum_probs=21.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCce
Q 039424 1 MKGHPGTGKSTLADAIASALKIPL 24 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~ 24 (203)
|.||||+||||+++.++..++..+
T Consensus 56 l~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 56 LAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp EESSTTSSHHHHHHHHHHHHTCCE
T ss_pred EECCCCCcHHHHHHHHHHHhCCCE
Confidence 579999999999999999887543
No 169
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.47 E-value=3.6e-05 Score=60.08 Aligned_cols=26 Identities=42% Similarity=0.650 Sum_probs=22.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|.|+||+|||++|+.+++.++.+++.
T Consensus 56 l~GppGtGKT~la~aia~~~~~~~~~ 81 (322)
T 3eie_A 56 LYGPPGTGKSYLAKAVATEANSTFFS 81 (322)
T ss_dssp EECSSSSCHHHHHHHHHHHHTCEEEE
T ss_pred EECCCCCcHHHHHHHHHHHHCCCEEE
Confidence 57999999999999999999877644
No 170
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.44 E-value=4.9e-05 Score=57.97 Aligned_cols=26 Identities=42% Similarity=0.825 Sum_probs=21.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|.|+||+||||+++.|+..++..++.
T Consensus 78 l~Gp~GtGKTtl~~~i~~~~~~~~i~ 103 (278)
T 1iy2_A 78 LVGPPGVGKTHLARAVAGEARVPFIT 103 (278)
T ss_dssp EECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred EECCCcChHHHHHHHHHHHcCCCEEE
Confidence 57999999999999999988755543
No 171
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.00043 Score=53.90 Aligned_cols=20 Identities=15% Similarity=0.257 Sum_probs=18.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+|||++++.+++.+
T Consensus 50 i~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 50 ITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp EECCCSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999887
No 172
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.41 E-value=4.5e-05 Score=54.15 Aligned_cols=20 Identities=30% Similarity=0.792 Sum_probs=18.4
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+||+||||+++.+++.+
T Consensus 48 l~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 48 LIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999886
No 173
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.41 E-value=5.7e-05 Score=59.02 Aligned_cols=25 Identities=44% Similarity=0.654 Sum_probs=21.5
Q ss_pred CCCCCCCChHHHHHHHHHhC-CCcee
Q 039424 1 MKGHPGTGKSTLADAIASAL-KIPLI 25 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-~~~~i 25 (203)
|.||||+|||++|+.++..+ +.+++
T Consensus 50 L~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 50 LFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp EESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred EECCCCccHHHHHHHHHHHcCCCcEE
Confidence 47999999999999999988 65554
No 174
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.40 E-value=4.3e-05 Score=60.56 Aligned_cols=27 Identities=41% Similarity=0.605 Sum_probs=23.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.|+||+||||+|+.++..++.+++..
T Consensus 89 L~GppGtGKT~la~ala~~~~~~~~~v 115 (355)
T 2qp9_X 89 LYGPPGTGKSYLAKAVATEANSTFFSV 115 (355)
T ss_dssp EECSTTSCHHHHHHHHHHHHTCEEEEE
T ss_pred EECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 579999999999999999998776543
No 175
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.38 E-value=3.5e-05 Score=54.58 Aligned_cols=20 Identities=30% Similarity=0.762 Sum_probs=18.4
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+||+||||+++.+++.+
T Consensus 48 l~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 48 LLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp EESCGGGCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999886
No 176
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.37 E-value=0.00019 Score=62.44 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+|||++|+.+|..+|.+++..
T Consensus 243 L~GPPGTGKT~LAraiA~elg~~~~~v 269 (806)
T 3cf2_A 243 LYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp EECCTTSCHHHHHHHHHTTTTCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCeEEEE
Confidence 479999999999999999999887544
No 177
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.36 E-value=6e-05 Score=59.71 Aligned_cols=26 Identities=35% Similarity=0.565 Sum_probs=22.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|.|+||+||||+|+.++..++.+++.
T Consensus 122 l~GppGtGKT~la~aia~~~~~~~~~ 147 (357)
T 3d8b_A 122 LFGPPGTGKTLIGKCIASQSGATFFS 147 (357)
T ss_dssp EESSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 57999999999999999999877643
No 178
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.35 E-value=8e-05 Score=58.27 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=23.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|+|+||+||||+|+.+++.++.+++..
T Consensus 60 l~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 60 FSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp EECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred EECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 579999999999999999998776554
No 179
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.35 E-value=7.5e-05 Score=51.26 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+|||++|+.+++..
T Consensus 29 l~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 29 LYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp EESSTTSSHHHHHHHHHHSS
T ss_pred EECCCCCCHHHHHHHHHHhC
Confidence 57999999999999998764
No 180
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.35 E-value=5.8e-05 Score=61.81 Aligned_cols=27 Identities=48% Similarity=0.744 Sum_probs=22.9
Q ss_pred CCCCCCCChHHHHHHHHHhCC--Cceech
Q 039424 1 MKGHPGTGKSTLADAIASALK--IPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~--~~~i~~ 27 (203)
|.||||+||||+|+.+++.++ ++++..
T Consensus 68 l~GppGtGKT~la~ala~~l~~~~~~~~~ 96 (456)
T 2c9o_A 68 LAGPPGTGKTALALAIAQELGSKVPFCPM 96 (456)
T ss_dssp EECCTTSSHHHHHHHHHHHHCTTSCEEEE
T ss_pred EECCCcCCHHHHHHHHHHHhCCCceEEEE
Confidence 479999999999999999998 665543
No 181
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.34 E-value=6.5e-05 Score=62.46 Aligned_cols=27 Identities=33% Similarity=0.630 Sum_probs=23.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|+|+||+||||+|+.+++.+++.++..
T Consensus 82 L~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 82 LYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp EECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 579999999999999999999877644
No 182
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.30 E-value=4.4e-05 Score=52.86 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=18.2
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++|+||||+++.++..+
T Consensus 41 l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 41 VWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp EESSSTTTTCHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999876
No 183
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.30 E-value=0.00034 Score=54.10 Aligned_cols=20 Identities=50% Similarity=0.722 Sum_probs=18.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+++.+++.+
T Consensus 51 l~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 51 FAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp EESCTTSSHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHHh
Confidence 57999999999999999875
No 184
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.30 E-value=0.00048 Score=56.10 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=23.7
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCc--eechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIP--LIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~--~i~~d~~~ 31 (203)
|.|+||+||||+++.++..+ +.. +++...+.
T Consensus 135 l~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 135 IYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp EECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 57999999999999999876 443 45655553
No 185
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.30 E-value=8.5e-05 Score=61.04 Aligned_cols=27 Identities=41% Similarity=0.732 Sum_probs=23.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+||||+++.++...+.+++..
T Consensus 54 L~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 54 LVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp EECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred EECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 579999999999999999998876543
No 186
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.27 E-value=8.9e-05 Score=59.37 Aligned_cols=27 Identities=33% Similarity=0.586 Sum_probs=23.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.|+||+|||++|+.++..++.+++..
T Consensus 153 L~GppGtGKT~la~aia~~~~~~~~~v 179 (389)
T 3vfd_A 153 LFGPPGNGKTMLAKAVAAESNATFFNI 179 (389)
T ss_dssp EESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred EECCCCCCHHHHHHHHHHhhcCcEEEe
Confidence 579999999999999999998776543
No 187
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=97.27 E-value=0.00014 Score=55.39 Aligned_cols=103 Identities=19% Similarity=0.270 Sum_probs=65.1
Q ss_pred CCCCCCCChHHHHHHHHHhCC---CceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASALK---IPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIASTQ 77 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~---~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (203)
|.|..||||+++.+.|.+.++ +.++..... .. . +..+..++......
T Consensus 80 fEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~P----------------t~-------e-------E~~~~ylwR~~~~l 129 (289)
T 3rhf_A 80 LQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAP----------------TD-------E-------EKSHDFLWRIEKQV 129 (289)
T ss_dssp EEECTTSSHHHHHHHHHHHSCGGGEEEEECCSC----------------CH-------H-------HHTSCTTHHHHTTC
T ss_pred EECCCCCChHHHHHHHHHhcCcCceEEEECCCC----------------Ch-------h-------hhcCCHHHHHHHhC
Confidence 469999999999999999985 334432221 10 0 11122233444444
Q ss_pred hhCCCcEEEeCCC------------CchH-------hHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCC
Q 039424 78 LKLGVSVVVDSPL------------SRRA-------HLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEG 134 (203)
Q Consensus 78 l~~~~~vIid~~~------------~~~~-------~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~ 134 (203)
-..|..+|.|.+- ...+ ....|.+++...|+.++-++|+.+. +..++|+..|..+|
T Consensus 130 P~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~~L~~~G~~ilKf~LhIsk-eEQ~kR~~~R~~dP 204 (289)
T 3rhf_A 130 PAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFESRLTEQGTTIVKVMLNISK-DEQKKRLIARLDDP 204 (289)
T ss_dssp CCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECCH-HHHHHHHHHHHHCG
T ss_pred CCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEECCH-HHHHHHHHHHhcCC
Confidence 4668888888741 1111 2234455666778888889999765 57999999987654
No 188
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.27 E-value=8.3e-05 Score=52.52 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=25.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|+|+||+||||+|..|.+ .|+.+++-|.+
T Consensus 21 i~G~SGaGKStlal~L~~-rG~~lvaDD~v 49 (181)
T 3tqf_A 21 ITGEANIGKSELSLALID-RGHQLVCDDVI 49 (181)
T ss_dssp EEESSSSSHHHHHHHHHH-TTCEEEESSEE
T ss_pred EEcCCCCCHHHHHHHHHH-cCCeEecCCEE
Confidence 579999999999999985 69888887766
No 189
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.26 E-value=9.5e-05 Score=53.86 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.8
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|++||||||+++.|+..+.
T Consensus 25 l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 25 LSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EECSTTSSHHHHHHHHHHHST
T ss_pred EECCCCCCHHHHHHHHHhhCC
Confidence 579999999999999998764
No 190
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.25 E-value=8e-05 Score=53.13 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=19.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+|++||||||+|..|+.. +.+
T Consensus 4 V~Gg~~SGKS~~A~~la~~-~~~ 25 (180)
T 1c9k_A 4 VTGGARSGKSRHAEALIGD-APQ 25 (180)
T ss_dssp EEECTTSSHHHHHHHHHCS-CSS
T ss_pred EECCCCCcHHHHHHHHHhc-CCC
Confidence 5799999999999999976 644
No 191
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.24 E-value=7e-05 Score=54.47 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=20.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI 25 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i 25 (203)
|.||||+||||+|..|++.++..++
T Consensus 63 i~GPPGtGKTt~a~ala~~l~g~i~ 87 (212)
T 1tue_A 63 FCGPANTGKSYFGMSFIHFIQGAVI 87 (212)
T ss_dssp EESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred EECCCCCCHHHHHHHHHHHhCCCee
Confidence 4699999999999999988754433
No 192
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.22 E-value=0.00011 Score=57.17 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=24.2
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCc--eechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIP--LIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~--~i~~d~~~ 31 (203)
|.|+||+||||+++.+++.+ +.+ +++..++.
T Consensus 42 l~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~ 77 (324)
T 1l8q_A 42 IYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFA 77 (324)
T ss_dssp EECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHH
Confidence 57999999999999999876 544 56655553
No 193
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.21 E-value=0.00011 Score=58.52 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|.|+|||||||+++.|+..++..++.
T Consensus 174 l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 174 FKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp EECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred EECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 57999999999999999888766555
No 194
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.18 E-value=0.00014 Score=59.34 Aligned_cols=27 Identities=41% Similarity=0.535 Sum_probs=23.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.|+||+||||+|+.|++.++..++..
T Consensus 55 L~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 55 LWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp EECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred EECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 579999999999999999998766543
No 195
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.18 E-value=0.0001 Score=57.29 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=23.8
Q ss_pred CCCCCCCChHHHHHHHHHhCC-------CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALK-------IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~-------~~~i~~d~~ 30 (203)
|.|++||||||+++.|+..+. +.++..|..
T Consensus 95 I~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 95 VAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred EECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 579999999999999997652 346677665
No 196
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.18 E-value=0.00012 Score=59.67 Aligned_cols=25 Identities=44% Similarity=0.654 Sum_probs=21.6
Q ss_pred CCCCCCCChHHHHHHHHHhC-CCcee
Q 039424 1 MKGHPGTGKSTLADAIASAL-KIPLI 25 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-~~~~i 25 (203)
|.||||+||||+|+.++..+ +.+++
T Consensus 172 L~GppGtGKT~lA~aia~~~~~~~~~ 197 (444)
T 2zan_A 172 LFGPPGTGKSYLAKAVATEANNSTFF 197 (444)
T ss_dssp EECSTTSSHHHHHHHHHHHCCSSEEE
T ss_pred EECCCCCCHHHHHHHHHHHcCCCCEE
Confidence 57999999999999999998 66553
No 197
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.17 E-value=0.00013 Score=56.63 Aligned_cols=25 Identities=48% Similarity=0.687 Sum_probs=21.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI 25 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i 25 (203)
|+|+||+||||+|+.+++.++.+++
T Consensus 43 l~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 43 LFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp EECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5799999999999999998886653
No 198
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.16 E-value=0.00014 Score=60.09 Aligned_cols=26 Identities=42% Similarity=0.825 Sum_probs=22.3
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|.|+||+||||+++.++...+.+++.
T Consensus 69 L~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 69 LVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp EECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 57999999999999999988766543
No 199
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.15 E-value=0.00012 Score=57.17 Aligned_cols=25 Identities=20% Similarity=0.498 Sum_probs=21.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI 25 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i 25 (203)
|.|+||+|||++++.+++.++.+++
T Consensus 51 l~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 51 LEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp EESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred EECCCCCcHHHHHHHHHHHhCCCeE
Confidence 4799999999999999999886643
No 200
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.13 E-value=0.00014 Score=51.43 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||++..|...+
T Consensus 9 i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 9 VVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 57999999999999998765
No 201
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.12 E-value=0.00013 Score=52.72 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=23.8
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCc--eechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIP--LIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~--~i~~d~~~~ 32 (203)
|.|+||+||||+++.++..+ +.. +++...+..
T Consensus 59 l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 59 LHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp EECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 57999999999999999876 333 356655543
No 202
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.11 E-value=0.00071 Score=52.19 Aligned_cols=29 Identities=34% Similarity=0.452 Sum_probs=22.3
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--Cceechhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~ 29 (203)
++|++|+||||++..|+..+ | +.+++.|.
T Consensus 103 i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 103 LVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp EECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 46999999999999998766 3 34566663
No 203
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=97.08 E-value=0.00075 Score=58.37 Aligned_cols=103 Identities=11% Similarity=0.113 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCC
Q 039424 67 YDVIWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSS 146 (203)
Q Consensus 67 ~~~l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~ 146 (203)
|..-.+.+...+..|..||+|... .....++ .....| ++||+.++..+++++ +..|+.
T Consensus 606 YGt~~~~v~~~~~~g~~~ildi~~---~~~~~l~---~~~~~p-~~ifi~pps~~~L~~-l~~R~t-------------- 663 (721)
T 2xkx_A 606 YGTSVQSVREVAEQGKHCILDVSA---NAVRRLQ---AAHLHP-IAIFIRPRSLENVLE-INKRIT-------------- 663 (721)
T ss_pred ceeeHHHHHHHHHCCCcEEEeCCH---HHHHHHH---hcccCC-EEEEEeCCcHHHHHH-HhccCC--------------
Confidence 444556677788899999999742 2222222 112344 577787666666666 766642
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 147 WHKPSTWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 147 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
.+.+.+|++....+...+ ....+.+|+++ ++++.+++|.+.|...
T Consensus 664 ------~~~~~~rl~~a~~~e~~~-~~~fd~vi~Nd---~l~~a~~~l~~~i~~~ 708 (721)
T 2xkx_A 664 ------EEQARKAFDRATKLEQEF-TECFSAIVEGD---SFEEIYHKVKRVIEDL 708 (721)
T ss_pred ------HHHHHHHHHHHHHHHHhc-cccCcEEEECc---CHHHHHHHHHHHHHhc
Confidence 245666665542111111 11234567764 5999999999988754
No 204
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.08 E-value=0.00016 Score=53.87 Aligned_cols=17 Identities=41% Similarity=0.690 Sum_probs=15.7
Q ss_pred CCCCCCCChHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIA 17 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~ 17 (203)
|.|++||||||+++.|+
T Consensus 35 l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 35 LTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHH
Confidence 57999999999999888
No 205
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.08 E-value=0.0002 Score=50.07 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=18.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+.||||||+.+.|+..+
T Consensus 38 L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 38 LNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EECSTTSSHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHhC
Confidence 47999999999999999876
No 206
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.06 E-value=0.00014 Score=53.40 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=17.4
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+++.|+..+
T Consensus 30 l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 30 VFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEESTTSSHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999998643
No 207
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.05 E-value=0.00084 Score=55.52 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=23.0
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~ 30 (203)
|+|+|||||||++..|+..+ | ..+++.|..
T Consensus 106 ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 106 FVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 47999999999999999655 4 345666653
No 208
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.04 E-value=0.00018 Score=51.81 Aligned_cols=20 Identities=40% Similarity=0.737 Sum_probs=18.2
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 6 i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 6 LTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EESCCSSCHHHHHHHHHHHH
T ss_pred EECCCCChHHHHHHHHHhhc
Confidence 57999999999999999876
No 209
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.04 E-value=0.0002 Score=58.84 Aligned_cols=20 Identities=35% Similarity=0.836 Sum_probs=18.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+++.|++.+
T Consensus 206 L~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 206 LIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EESCTTTTTHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999886
No 210
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.03 E-value=5.4e-05 Score=51.91 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=18.5
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|+||+|||++|+.+++..+
T Consensus 32 l~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 32 LTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp EEEETTCCHHHHHGGGCCTTS
T ss_pred EECCCCccHHHHHHHHHHhCC
Confidence 579999999999999987665
No 211
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.03 E-value=0.0002 Score=59.09 Aligned_cols=31 Identities=29% Similarity=0.507 Sum_probs=25.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee--chhhHh
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI--DKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i--~~d~~~ 31 (203)
|.|+||+|||++|+.++..++.+++ +...+.
T Consensus 243 L~GppGtGKT~lAraia~~~~~~fv~vn~~~l~ 275 (489)
T 3hu3_A 243 LYGPPGTGKTLIARAVANETGAFFFLINGPEIM 275 (489)
T ss_dssp EECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHH
T ss_pred EECcCCCCHHHHHHHHHHHhCCCEEEEEchHhh
Confidence 5799999999999999999987765 444443
No 212
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.99 E-value=0.0002 Score=52.56 Aligned_cols=21 Identities=33% Similarity=0.648 Sum_probs=18.9
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|+||+||||+++.+++.++
T Consensus 50 l~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 50 FSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EECSTTSCHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhc
Confidence 579999999999999998774
No 213
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.98 E-value=0.0002 Score=56.76 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=18.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+++.+++.+
T Consensus 49 l~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 49 LYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp ECBCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999877
No 214
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.97 E-value=0.00023 Score=50.54 Aligned_cols=20 Identities=40% Similarity=0.599 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+++.|...+
T Consensus 11 i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 11 FAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHhc
Confidence 57999999999999998764
No 215
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.96 E-value=0.00025 Score=59.33 Aligned_cols=25 Identities=40% Similarity=0.740 Sum_probs=21.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCcee
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLI 25 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i 25 (203)
|.||||+||||+++.++..++.+++
T Consensus 113 l~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 113 LAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp EESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred EECCCCCCHHHHHHHHHHhcCCCeE
Confidence 4799999999999999998875543
No 216
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.96 E-value=0.0002 Score=56.63 Aligned_cols=22 Identities=45% Similarity=0.742 Sum_probs=19.9
Q ss_pred CCCCCCCChHHHHHHHHHhCCC
Q 039424 1 MKGHPGTGKSTLADAIASALKI 22 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~ 22 (203)
|.|+||+||||+|+.+++.++.
T Consensus 75 l~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 75 IAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp EEESTTSSHHHHHHHHHHHHCS
T ss_pred EECCCCCCHHHHHHHHHHHhcc
Confidence 5799999999999999998863
No 217
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.96 E-value=0.00028 Score=61.71 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=22.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|+|+||+||||+++.|+..++..++.
T Consensus 243 L~Gp~GtGKTtLarala~~l~~~~i~ 268 (806)
T 1ypw_A 243 LYGPPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp ECSCTTSSHHHHHHHHHHTTTCEEEE
T ss_pred EECcCCCCHHHHHHHHHHHcCCcEEE
Confidence 57999999999999999998876544
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.95 E-value=0.00023 Score=54.84 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=18.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+|+.|++.+
T Consensus 52 l~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 52 FLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EESCSSSSHHHHHHHHHHHH
T ss_pred EECCCCcCHHHHHHHHHHHH
Confidence 57999999999999999876
No 219
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.93 E-value=0.00021 Score=53.27 Aligned_cols=20 Identities=35% Similarity=0.534 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 36 iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 36 IMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 57999999999999998554
No 220
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.92 E-value=0.00026 Score=56.17 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|+|++||||||+++.|+..+...
T Consensus 175 IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 175 ILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EECCTTSHHHHHHHHHHHHTTCE
T ss_pred EECCCCCCHHHHHHHHHHHhCCC
Confidence 57999999999999999887654
No 221
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.92 E-value=0.00027 Score=51.58 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=21.5
Q ss_pred CCCCCCCChHHHHHHHHHhCC--Cceechhh
Q 039424 1 MKGHPGTGKSTLADAIASALK--IPLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~--~~~i~~d~ 29 (203)
|.|+|||||||++..|+...+ ..+++.+.
T Consensus 25 i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 25 VYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp EECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 579999999999999986333 44555543
No 222
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.91 E-value=0.00035 Score=61.16 Aligned_cols=26 Identities=42% Similarity=0.643 Sum_probs=22.4
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceec
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLID 26 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~ 26 (203)
|.||||+||||+|+.|+..++..++.
T Consensus 516 L~GppGtGKT~Lakala~~~~~~~i~ 541 (806)
T 1ypw_A 516 FYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CBCCTTSSHHHHHHHHHHHHTCCCCC
T ss_pred EECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 57999999999999999998766544
No 223
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.91 E-value=0.00025 Score=54.86 Aligned_cols=20 Identities=40% Similarity=0.637 Sum_probs=18.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+++.|+..+
T Consensus 131 IvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 131 FIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EECSSSSSHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhhhc
Confidence 57999999999999999776
No 224
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}
Probab=96.90 E-value=0.0017 Score=50.18 Aligned_cols=103 Identities=10% Similarity=0.008 Sum_probs=56.1
Q ss_pred HHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCC
Q 039424 71 WKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKP 150 (203)
Q Consensus 71 ~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 150 (203)
.+.+...+.+|..||+|-.. +....++ .....| ++||+.+|..+.+.+| ..|....
T Consensus 188 ~~~V~~vl~~Gk~~ILDId~---QGa~~lk---~~~~~p-i~IFI~PPS~eeL~~r-r~R~~~e---------------- 243 (308)
T 3kfv_A 188 LDTVRVIAEKDKHALLDVTP---SAIERLN---YVQYYP-IVVFFIPESRPALKAL-RQWLAPA---------------- 243 (308)
T ss_dssp HHHHHHHHHTTCEEEECCCH---HHHHHHH---HTTCCC-EEEEEEESCHHHHHHH-HHHHSTT----------------
T ss_pred HHHHHHHHHCCCcEEEEECH---HHHHHHH---hcCCCC-EEEEEeCCCHHHHHHH-HhcCCCC----------------
Confidence 34566778899999999742 2222222 222344 5777777788788876 5554321
Q ss_pred CCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhcc
Q 039424 151 STWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILHI 201 (203)
Q Consensus 151 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~~ 201 (203)
+.+.+.++++....+...+.. .-+.+|+.++ ++++.+++|.+.|...
T Consensus 244 -see~~~r~~~aa~eiE~~~~~-~FD~vI~VND--dle~A~~~L~~iI~~~ 290 (308)
T 3kfv_A 244 -SRRSTRRLYAQAQKLRKHSSH-LFTATIPLNG--TSDTWYQELKAIIREQ 290 (308)
T ss_dssp -CCCCHHHHHHHHHHHHHHHGG-GCSEEEEECS--SSTHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHhhhc-cCcEEEEcCC--CHHHHHHHHHHHHHHh
Confidence 112334443332111110111 1336665555 6888888888877643
No 225
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.89 E-value=0.00028 Score=53.40 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+||+||||||+.+.|+..+
T Consensus 30 i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 30 VTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EECSTTCSHHHHHHHHHHHH
T ss_pred EECCCCccHHHHHHHHHHhC
Confidence 57999999999999998764
No 226
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.89 E-value=0.00027 Score=55.48 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=18.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.||||+||||+++.+++.+
T Consensus 51 l~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 51 FYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EECSSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 47999999999999999875
No 227
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.88 E-value=0.00011 Score=52.00 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=18.0
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+++.|...+
T Consensus 7 IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 7 IVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEESCHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 57999999999999998775
No 228
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.87 E-value=0.0003 Score=51.63 Aligned_cols=20 Identities=30% Similarity=0.536 Sum_probs=17.2
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+|||||||+++.|+..+
T Consensus 28 i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 28 LTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 47999999999999998543
No 229
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.87 E-value=0.00031 Score=52.50 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 29 liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 29 LLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 230
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.87 E-value=0.00026 Score=56.15 Aligned_cols=20 Identities=30% Similarity=0.486 Sum_probs=18.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+++.+++.+
T Consensus 50 l~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 50 FLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp EEECTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999876
No 231
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.86 E-value=0.00039 Score=52.48 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.7
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|+||+|||++|+.+++..+
T Consensus 34 l~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 34 IIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp EECCTTSCHHHHHHHHHHTST
T ss_pred EECCCCCcHHHHHHHHHHhcC
Confidence 579999999999999998764
No 232
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.83 E-value=0.00024 Score=52.55 Aligned_cols=20 Identities=35% Similarity=0.408 Sum_probs=17.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 35 iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 35 IIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEECTTSCHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999998554
No 233
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.83 E-value=0.00029 Score=51.47 Aligned_cols=19 Identities=42% Similarity=0.398 Sum_probs=16.9
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|++||||||+.+.|+..
T Consensus 27 liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 27 GLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EECCTTSSTTHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5799999999999999854
No 234
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.82 E-value=0.00036 Score=51.66 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=17.1
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|+|||||||+++.|+..
T Consensus 29 i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 29 MFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHH
Confidence 5799999999999999973
No 235
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.81 E-value=0.00036 Score=55.17 Aligned_cols=20 Identities=35% Similarity=0.567 Sum_probs=18.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+++.+++.+
T Consensus 50 i~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 50 IYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp EEECTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999876
No 236
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.81 E-value=0.0004 Score=60.46 Aligned_cols=27 Identities=41% Similarity=0.593 Sum_probs=24.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceech
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~ 27 (203)
|.||||+|||.+|+.+|..++.++++.
T Consensus 516 l~GPPGtGKT~lAkaiA~e~~~~f~~v 542 (806)
T 3cf2_A 516 FYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp EESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred EecCCCCCchHHHHHHHHHhCCceEEe
Confidence 469999999999999999999887654
No 237
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.80 E-value=0.00031 Score=53.62 Aligned_cols=20 Identities=40% Similarity=0.541 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 39 iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 39 ILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHHcCC
Confidence 57999999999999998654
No 238
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.80 E-value=0.00038 Score=55.24 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=18.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+++.+++.+
T Consensus 49 i~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 49 LLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999887
No 239
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.78 E-value=0.00032 Score=53.27 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 42 liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 42 IIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EECCTTSCHHHHHHHHTSSS
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 57999999999999998654
No 240
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.78 E-value=0.00038 Score=54.56 Aligned_cols=21 Identities=38% Similarity=0.575 Sum_probs=18.6
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|+||+||||+++.+++.++
T Consensus 63 l~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 63 FYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EECSTTSSHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHhC
Confidence 579999999999999998753
No 241
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.77 E-value=0.00033 Score=52.27 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=17.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 36 i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 36 VVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EECSTTSSHHHHHHHHTTCS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999998554
No 242
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.76 E-value=0.0003 Score=55.15 Aligned_cols=21 Identities=48% Similarity=0.596 Sum_probs=19.3
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|+||+|||++|+.+++.++
T Consensus 50 l~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 50 VFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp EECCGGGCTTHHHHHHHHHSC
T ss_pred EECCCCccHHHHHHHHHHhCc
Confidence 579999999999999998876
No 243
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.75 E-value=0.0029 Score=51.20 Aligned_cols=30 Identities=30% Similarity=0.361 Sum_probs=22.6
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~ 30 (203)
|+|++||||||++..|+..+ | +.+++.|..
T Consensus 103 i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 103 LVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp EECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 46999999999999999776 3 335666543
No 244
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.74 E-value=0.00037 Score=51.14 Aligned_cols=20 Identities=40% Similarity=0.649 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 40 iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 40 FHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999998654
No 245
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.74 E-value=0.00048 Score=59.87 Aligned_cols=20 Identities=35% Similarity=0.836 Sum_probs=18.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+|+.|++.+
T Consensus 206 L~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 206 LIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp EESCTTTTTHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999986
No 246
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.74 E-value=0.00045 Score=51.94 Aligned_cols=19 Identities=42% Similarity=0.653 Sum_probs=17.1
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|++||||||+.+.|+..
T Consensus 34 l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 34 LMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EECSTTSSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5799999999999999964
No 247
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.73 E-value=0.00037 Score=52.76 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 37 liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 37 IIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999998655
No 248
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.73 E-value=0.00039 Score=49.78 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
++|+|||||||++..++..+
T Consensus 8 i~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 8 ITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999997776654
No 249
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.72 E-value=0.00045 Score=53.49 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=18.0
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+++.|+..+
T Consensus 107 lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 107 VVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHHH
Confidence 47999999999999999765
No 250
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.71 E-value=0.00036 Score=54.78 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++|+||||+++.|+..+
T Consensus 41 l~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 41 LYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EECSTTSSHHHHHHTHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999854
No 251
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.70 E-value=0.0004 Score=51.95 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 33 i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 33 FAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999998654
No 252
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.70 E-value=0.0004 Score=52.14 Aligned_cols=20 Identities=40% Similarity=0.604 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 40 i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 40 IVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999998655
No 253
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.69 E-value=0.00041 Score=51.84 Aligned_cols=20 Identities=40% Similarity=0.574 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 37 l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 37 LIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 254
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.68 E-value=0.00041 Score=52.36 Aligned_cols=20 Identities=45% Similarity=0.664 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 38 liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 38 IIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 255
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.68 E-value=0.00043 Score=52.49 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 55 liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 55 VIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EEcCCCCcHHHHHHHHHcCC
Confidence 57999999999999998655
No 256
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.67 E-value=0.00054 Score=52.02 Aligned_cols=19 Identities=42% Similarity=0.679 Sum_probs=17.1
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|++||||||+.+.|+..
T Consensus 51 l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 51 IMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EECCTTSSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5799999999999999964
No 257
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.67 E-value=0.00053 Score=53.15 Aligned_cols=30 Identities=30% Similarity=0.431 Sum_probs=23.0
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~ 30 (203)
|+|++||||||++..|+..+ | +.+++.|..
T Consensus 109 ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 109 VVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred EEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 57999999999999999766 3 345566654
No 258
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=96.66 E-value=0.001 Score=53.28 Aligned_cols=53 Identities=9% Similarity=0.056 Sum_probs=33.6
Q ss_pred HHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcC
Q 039424 71 WKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRG 131 (203)
Q Consensus 71 ~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~ 131 (203)
.+.+.+.+.+|+.+|+|-.. +....++ .....| ++||+.+|..+.+++| ..|.
T Consensus 279 ~~~V~~~~~~Gk~~iLdId~---qg~~~l~---~~~~~p-~~IFI~PPS~~~L~~~-~~r~ 331 (391)
T 3tsz_A 279 LHTIKQIIDQDKHALLDVTP---NAVDRLN---YAQWYP-IVVFLNPDSKQGVKTM-RMRL 331 (391)
T ss_dssp HHHHHHHHTTTCEEEECCCH---HHHHHHH---HTTCCC-EEEEEECCCHHHHHHH-HHHH
T ss_pred HHHHHHHHHcCCEEEEEeCH---HHHHHHH---hCCCCC-EEEEEeCcCHHHHHHH-HhcC
Confidence 45667778899999999732 2222322 222334 5788888888788876 5554
No 259
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.66 E-value=0.00045 Score=51.22 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 39 i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 39 VAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 260
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.65 E-value=0.00054 Score=52.99 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=18.0
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+++.|+..+
T Consensus 105 lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 105 IVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999999765
No 261
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.65 E-value=0.00046 Score=52.08 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 46 l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 46 LIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999998654
No 262
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.64 E-value=0.0007 Score=49.08 Aligned_cols=19 Identities=26% Similarity=0.573 Sum_probs=15.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
++|+||||||++|..+...
T Consensus 10 ~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 10 ITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EECCTTSSHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHH
Confidence 5899999999999886433
No 263
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.64 E-value=0.00048 Score=51.78 Aligned_cols=20 Identities=40% Similarity=0.544 Sum_probs=17.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 31 liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 31 LVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 57999999999999998654
No 264
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.64 E-value=0.00049 Score=52.84 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=17.4
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+|||||||+++.|+..+
T Consensus 40 i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 40 VTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHH
Confidence 57999999999999987654
No 265
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.63 E-value=0.0045 Score=49.14 Aligned_cols=29 Identities=34% Similarity=0.459 Sum_probs=22.3
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCceechhh
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIPLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~~i~~d~ 29 (203)
|.|+||+||||+|..++... .+.+++++.
T Consensus 79 I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 79 IYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 46999999999999987653 345677654
No 266
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.63 E-value=0.00047 Score=52.49 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 50 i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 50 LVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999998655
No 267
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.63 E-value=0.00058 Score=53.45 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=18.0
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+++.|+..+
T Consensus 134 lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 134 FVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999765
No 268
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.62 E-value=0.00049 Score=52.07 Aligned_cols=20 Identities=40% Similarity=0.650 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 51 i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 51 LVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhccC
Confidence 57999999999999998654
No 269
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.62 E-value=0.00079 Score=52.46 Aligned_cols=30 Identities=30% Similarity=0.296 Sum_probs=25.1
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|+|++|+||||+++.+++..++.+++....
T Consensus 36 i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~~ 65 (350)
T 2qen_A 36 LLGIRRVGKSSLLRAFLNERPGILIDCREL 65 (350)
T ss_dssp EECCTTSSHHHHHHHHHHHSSEEEEEHHHH
T ss_pred EECCCcCCHHHHHHHHHHHcCcEEEEeecc
Confidence 579999999999999999888667776543
No 270
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.61 E-value=0.0061 Score=47.82 Aligned_cols=20 Identities=20% Similarity=0.386 Sum_probs=17.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|.||+||||++..++...
T Consensus 51 IaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 51 IGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp EEECTTSCHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHH
Confidence 47999999999999998663
No 271
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.59 E-value=0.0089 Score=46.36 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+||+||||++..++...
T Consensus 73 i~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 73 IAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHH
Confidence 57999999999999998653
No 272
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=96.59 E-value=0.008 Score=46.82 Aligned_cols=100 Identities=13% Similarity=0.150 Sum_probs=56.2
Q ss_pred HHHHHHhhCCCcEEEeCCCC-chHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHHHHhcCCCCCCCccCCCCCCCCCCC
Q 039424 72 KIASTQLKLGVSVVVDSPLS-RRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRRLEGRGNEGGCGVVGDDRPSSWHKP 150 (203)
Q Consensus 72 ~~~~~~l~~~~~vIid~~~~-~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~ 150 (203)
+.+......|..||+|-... .... +.+ .....++||+.+|..+++.+|+..|+..
T Consensus 220 e~i~~v~~~Gk~vILDIDvQnGa~q------lk~-~~~~~i~IFI~PPS~eeLe~RL~~RGt~----------------- 275 (337)
T 4dey_A 220 ERIFELARTLQLVVLDADTINHPAQ------LSK-TSLAPIVVYVKISSPKVLQRLIKSRGKS----------------- 275 (337)
T ss_dssp HHHHHHTTTCCEEEEEETTCCSGGG------TTT-SSCCCEEEEECCSCHHHHHHHHHTTCHH-----------------
T ss_pred HHHHHHHhCCCEEEEEeCcHHHHHH------HHh-cCCCCEEEEEECcCHHHHHHHHHhCCch-----------------
Confidence 34444556799999998543 2222 111 1233467888888888999999998642
Q ss_pred CCHHHHHHHhhhhcCCCCCCCCCCCeEEEecCCCCChHHHHHHHHHHHhc
Q 039424 151 STWRDLERLLEGYCGCTEYDVGDVPKLTVDTTASVGFQELVSNVIEFILH 200 (203)
Q Consensus 151 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~e~~~~i~~~i~~ 200 (203)
..+.+..+++..+.....+. ..-+.+|.+++ +++.+.+|.+.|..
T Consensus 276 -~~~rl~~al~~ae~E~~~~~-~~FDyvIVNDd---Le~A~~~L~~iI~~ 320 (337)
T 4dey_A 276 -QAKHLNVQMVAADKLAQCPP-ELFDVILDENQ---LEDACEHLADYLEA 320 (337)
T ss_dssp -HHTTHHHHHHHHHHHHHSCG-GGCSEEECCSS---HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHhhCc-ccCCEEEECCC---HHHHHHHHHHHHHH
Confidence 22333333222111001111 11235665544 88888888887754
No 273
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.59 E-value=0.00054 Score=52.40 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 52 liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 52 LYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 57999999999999998655
No 274
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.58 E-value=0.00066 Score=53.56 Aligned_cols=22 Identities=32% Similarity=0.602 Sum_probs=19.7
Q ss_pred CCCCCCCChHHHHHHHHHhCCC
Q 039424 1 MKGHPGTGKSTLADAIASALKI 22 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~ 22 (203)
|+|+||+||||+++.+++.++.
T Consensus 43 l~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 43 FSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp EESCTTSSHHHHHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHHHHhCC
Confidence 5799999999999999988754
No 275
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.57 E-value=0.00054 Score=51.97 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 38 liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 38 VAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp EECSTTSSHHHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 57999999999999998654
No 276
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.56 E-value=0.00062 Score=50.48 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=20.4
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCceechh
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~~i~~d 28 (203)
|.|+|||||||++..++... +..+++.+
T Consensus 28 i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 28 LSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 47999999999998886543 34455554
No 277
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.55 E-value=0.00068 Score=52.56 Aligned_cols=32 Identities=31% Similarity=0.385 Sum_probs=23.7
Q ss_pred CCCCCCCChHHHHHHHHHhC----CCc--eechhhHhh
Q 039424 1 MKGHPGTGKSTLADAIASAL----KIP--LIDKDDVRD 32 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~~~--~i~~d~~~~ 32 (203)
|.|+||+|||+++..++..+ |.. +++..++..
T Consensus 157 l~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~ 194 (308)
T 2qgz_A 157 LYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAI 194 (308)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHH
Confidence 57999999999999998754 343 356665543
No 278
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.55 E-value=0.00058 Score=51.45 Aligned_cols=20 Identities=40% Similarity=0.544 Sum_probs=17.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 36 l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 36 VLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EECCSSSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 279
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.51 E-value=0.00073 Score=58.70 Aligned_cols=30 Identities=30% Similarity=0.524 Sum_probs=24.0
Q ss_pred CCCCCCCChHHHHHHHHHhCCCce--echhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPL--IDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~--i~~d~~ 30 (203)
|.|+||+|||++|+.|++.++.++ +++..+
T Consensus 493 l~G~~GtGKT~la~~la~~l~~~~~~i~~s~~ 524 (758)
T 1r6b_X 493 FAGPTGVGKTEVTVQLSKALGIELLRFDMSEY 524 (758)
T ss_dssp EECSTTSSHHHHHHHHHHHHTCEEEEEEGGGC
T ss_pred EECCCCCcHHHHHHHHHHHhcCCEEEEechhh
Confidence 479999999999999999988655 444444
No 280
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.51 E-value=0.00067 Score=53.67 Aligned_cols=20 Identities=35% Similarity=0.501 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.||+||||||+.+.|+..+
T Consensus 35 llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 35 IIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEESTTSSHHHHHHHHHTSS
T ss_pred EECCCCchHHHHHHHHhcCC
Confidence 47999999999999999654
No 281
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.50 E-value=0.00066 Score=51.44 Aligned_cols=20 Identities=45% Similarity=0.669 Sum_probs=17.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 35 i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 35 ILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998554
No 282
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.50 E-value=0.00068 Score=51.63 Aligned_cols=19 Identities=37% Similarity=0.452 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|+|||||||++..++..
T Consensus 35 i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 35 LVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHH
Confidence 5799999999999998853
No 283
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.49 E-value=0.00078 Score=51.88 Aligned_cols=20 Identities=50% Similarity=0.737 Sum_probs=18.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+++.+++.+
T Consensus 43 l~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 43 FSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EESSSSSSHHHHHHHHHHHH
T ss_pred EECcCCcCHHHHHHHHHHHh
Confidence 57999999999999999875
No 284
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.49 E-value=0.00083 Score=53.56 Aligned_cols=20 Identities=45% Similarity=0.518 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.||+||||||+.+.|+..+
T Consensus 34 llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 34 FVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EEcCCCchHHHHHHHHHcCC
Confidence 57999999999999998654
No 285
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.49 E-value=0.00069 Score=51.52 Aligned_cols=20 Identities=35% Similarity=0.582 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+...
T Consensus 7 lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 7 VVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEESSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 286
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.47 E-value=0.00085 Score=53.16 Aligned_cols=20 Identities=35% Similarity=0.459 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 59 IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 59 VIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EEcCCCchHHHHHHHHhcCC
Confidence 57999999999999998654
No 287
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.47 E-value=0.00066 Score=56.14 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.9
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|+||+|||++|+.|+..++
T Consensus 46 L~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 46 LLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EECCSSSSHHHHHHHGGGGBS
T ss_pred eecCchHHHHHHHHHHHHHHh
Confidence 579999999999999998774
No 288
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.46 E-value=0.00081 Score=53.55 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 141 ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 141 VTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp EECSSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhhc
Confidence 57999999999999998765
No 289
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.46 E-value=0.00074 Score=53.55 Aligned_cols=21 Identities=33% Similarity=0.650 Sum_probs=18.6
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|+|++||||||+.+.|+..+.
T Consensus 180 ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 180 VAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp EEESSSSCHHHHHHHHHTTSC
T ss_pred EECCCCCCHHHHHHHHHhcCC
Confidence 579999999999999997764
No 290
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.46 E-value=0.00087 Score=52.97 Aligned_cols=20 Identities=35% Similarity=0.524 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 46 llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 46 LLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EECSTTSSHHHHHHHHHTSS
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 47999999999999998554
No 291
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.44 E-value=0.00091 Score=52.96 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.||+||||||+.+.|+..+
T Consensus 34 llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 34 LLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EECSTTSSHHHHHHHHHTSS
T ss_pred EEcCCCchHHHHHHHHHCCC
Confidence 47999999999999998654
No 292
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.43 E-value=0.00077 Score=51.98 Aligned_cols=30 Identities=30% Similarity=0.465 Sum_probs=22.6
Q ss_pred CCCCCCCChHHHHHHHHHhC----C--CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASAL----K--IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~--~~~i~~d~~ 30 (203)
|+|++||||||++..|+..+ | +.+++.|..
T Consensus 110 lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 110 LFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 47999999999999998654 4 335666653
No 293
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.43 E-value=0.00091 Score=49.37 Aligned_cols=20 Identities=20% Similarity=0.072 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
++|+||+||||.+..++.++
T Consensus 17 itG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 17 ITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp EECSTTSCHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHHH
Confidence 47999999999999888776
No 294
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.43 E-value=0.0009 Score=52.55 Aligned_cols=20 Identities=55% Similarity=0.820 Sum_probs=17.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+|||||||+.+.|+..+
T Consensus 60 i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 60 ITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHhh
Confidence 57999999999999998654
No 295
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.43 E-value=0.0009 Score=52.97 Aligned_cols=20 Identities=35% Similarity=0.478 Sum_probs=18.1
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+++.|+..+
T Consensus 162 lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 162 IVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EEcCCCChHHHHHHHHHhhc
Confidence 57999999999999999765
No 296
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.43 E-value=0.0013 Score=49.85 Aligned_cols=21 Identities=38% Similarity=0.585 Sum_probs=18.6
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.||||+|||++|+.|+..++
T Consensus 109 l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 109 LFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp EECSTTSSHHHHHHHHHHHSS
T ss_pred EECCCCCCHHHHHHHHHhhhc
Confidence 479999999999999998754
No 297
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.42 E-value=0.0008 Score=53.11 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=18.1
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+|||||||+++.|+...
T Consensus 136 I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 136 VFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEESTTSSHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999775
No 298
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.42 E-value=0.00095 Score=52.90 Aligned_cols=20 Identities=45% Similarity=0.597 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.||+||||||+.+.|+..+
T Consensus 34 llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 34 LLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCchHHHHHHHHhcCC
Confidence 47999999999999998654
No 299
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=96.41 E-value=0.00086 Score=51.93 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=24.8
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|+|+||+||||+|-.|. ..|+.+++-|.+
T Consensus 152 i~G~sG~GKStlal~l~-~~G~~lv~DD~v 180 (312)
T 1knx_A 152 LTGRSGIGKSECALDLI-NKNHLFVGDDAI 180 (312)
T ss_dssp EEESSSSSHHHHHHHHH-TTTCEEEEEEEE
T ss_pred EEcCCCCCHHHHHHHHH-HcCCEEEeCCEE
Confidence 57999999999999997 568888887766
No 300
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.41 E-value=0.00092 Score=52.89 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 128 I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 128 VTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EECSTTSCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHhcc
Confidence 57999999999999998665
No 301
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.41 E-value=0.0011 Score=51.57 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=21.1
Q ss_pred CCCCCCCChHHHHHHHHHhCC--Cceech
Q 039424 1 MKGHPGTGKSTLADAIASALK--IPLIDK 27 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~--~~~i~~ 27 (203)
|.|+||+||||+|..++...| ..+++.
T Consensus 128 I~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 128 VTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred EEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 479999999999999997533 445555
No 302
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.40 E-value=0.001 Score=52.95 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.||+||||||+.+.|+..+
T Consensus 42 llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 42 LLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCChHHHHHHHHHcCC
Confidence 47999999999999999654
No 303
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.39 E-value=0.00098 Score=47.63 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.4
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+...
T Consensus 34 lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 34 LIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEECTTSSHHHHHHHHHHSC
T ss_pred EECcCCCCHHHHHHHHhcCC
Confidence 47999999999999998643
No 304
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.39 E-value=0.00047 Score=53.38 Aligned_cols=20 Identities=30% Similarity=0.448 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 85 ivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 85 LVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EESSSCHHHHHHHHHHTTSS
T ss_pred EECCCCchHHHHHHHHHcCC
Confidence 57999999999999998665
No 305
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.38 E-value=0.0012 Score=46.78 Aligned_cols=21 Identities=43% Similarity=0.631 Sum_probs=18.4
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|+|+.||||||+.+.|.--++
T Consensus 31 i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 31 IVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEECTTSSHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHHHHHc
Confidence 579999999999999986664
No 306
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.37 E-value=0.001 Score=52.88 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 34 llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 34 LLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EECSTTSSHHHHHHHHHTSS
T ss_pred EECCCCcHHHHHHHHHHcCC
Confidence 47999999999999999654
No 307
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.37 E-value=0.001 Score=51.30 Aligned_cols=20 Identities=40% Similarity=0.720 Sum_probs=18.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||+++.+++.+
T Consensus 47 l~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 47 ISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECcCCCCHHHHHHHHHHHh
Confidence 57999999999999999875
No 308
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.37 E-value=0.0012 Score=47.41 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=17.0
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|++||||||+.+.|+..
T Consensus 10 lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 10 LIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EESSTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHhcC
Confidence 5799999999999999864
No 309
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.36 E-value=0.00091 Score=58.96 Aligned_cols=20 Identities=30% Similarity=0.792 Sum_probs=18.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+||+||||+++.|++.+
T Consensus 196 L~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 196 LIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp EEECTTSCHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999999886
No 310
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.32 E-value=0.0012 Score=51.14 Aligned_cols=29 Identities=31% Similarity=0.441 Sum_probs=24.5
Q ss_pred CCCCCCCChHHHHHHHHHhCCCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASALKIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~i~~d~~ 30 (203)
|+|++|+||||++..|.+ .|..+++-|.+
T Consensus 149 ~~G~sG~GKSt~a~~l~~-~g~~lv~dD~~ 177 (314)
T 1ko7_A 149 ITGDSGIGKSETALELIK-RGHRLVADDNV 177 (314)
T ss_dssp EEESTTSSHHHHHHHHHH-TTCEEEESSEE
T ss_pred EEeCCCCCHHHHHHHHHh-cCCceecCCeE
Confidence 579999999999999985 58888876655
No 311
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.32 E-value=0.0011 Score=54.45 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=18.0
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+++.|+..+
T Consensus 298 LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 298 MVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCcccHHHHHHHHHHHh
Confidence 57999999999999999765
No 312
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.30 E-value=0.0017 Score=51.91 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=18.0
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+||+||||+++.+++.+
T Consensus 57 i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 57 SIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CTTCCSSSHHHHHHHHHHHH
T ss_pred CcCcCCCCHHHHHHHHHHHH
Confidence 48999999999999998765
No 313
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.30 E-value=0.00087 Score=52.47 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.5
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|+|++||||||+.+.|+..+.
T Consensus 176 i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 176 VCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp EEESTTSCHHHHHHHGGGGSC
T ss_pred EECCCCCCHHHHHHHHhCCCc
Confidence 579999999999999997663
No 314
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.29 E-value=0.0012 Score=52.03 Aligned_cols=20 Identities=40% Similarity=0.738 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+|||||||+...|...+
T Consensus 79 lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 79 LSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 57999999999999998653
No 315
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.29 E-value=0.014 Score=47.43 Aligned_cols=19 Identities=32% Similarity=0.525 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|+||+||||++..++..
T Consensus 205 i~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 205 IAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp EEECTTSCHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHH
Confidence 5799999999999998764
No 316
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.28 E-value=0.00082 Score=53.00 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.||+||||||+.+.|+..+
T Consensus 31 llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 31 ILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EECCCTHHHHHHHHHHHTSS
T ss_pred EECCCCccHHHHHHHHHcCC
Confidence 47999999999999998654
No 317
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.27 E-value=0.0013 Score=50.80 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+||+|||++|+.+++..
T Consensus 30 i~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 30 IHGDSGTGKELVARALHACS 49 (304)
T ss_dssp EESCTTSCHHHHHHHHHHHS
T ss_pred EECCCCchHHHHHHHHHHhC
Confidence 57999999999999999854
No 318
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.25 E-value=0.0015 Score=55.28 Aligned_cols=21 Identities=52% Similarity=0.808 Sum_probs=19.0
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|+||+||||+++.|+..++
T Consensus 65 l~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 65 LIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp EECCTTSSHHHHHHHHHHTSC
T ss_pred EEeCCCCCHHHHHHHHhccCC
Confidence 579999999999999998774
No 319
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.22 E-value=0.001 Score=51.18 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=17.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+.||||||+.+.|+..+
T Consensus 69 i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 69 VAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp EEESTTSSHHHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 57999999999999998654
No 320
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.21 E-value=0.0015 Score=45.33 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=16.4
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|++||||||+.++|..
T Consensus 8 lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 8 LIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EECSTTSSHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 479999999999999985
No 321
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.20 E-value=0.0017 Score=50.84 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCc
Q 039424 1 MKGHPGTGKSTLADAIASALKIP 23 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~ 23 (203)
|.|+||+||||+|+.+++.+...
T Consensus 29 ~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 29 IQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp EECCTTSCHHHHHHHHHHHHTCS
T ss_pred EECCCCchHHHHHHHHHHHHhCC
Confidence 57999999999999999987643
No 322
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.19 E-value=0.0013 Score=52.69 Aligned_cols=20 Identities=45% Similarity=0.645 Sum_probs=17.4
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.||+||||||+.+.|+..+
T Consensus 52 llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 52 LLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEESTTSSHHHHHHHHHTCS
T ss_pred EECCCCChHHHHHHHHhCCC
Confidence 57999999999999998543
No 323
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.18 E-value=0.015 Score=47.39 Aligned_cols=20 Identities=30% Similarity=0.507 Sum_probs=17.1
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||++..++...
T Consensus 208 I~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 208 VAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999987643
No 324
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.17 E-value=0.0012 Score=51.33 Aligned_cols=19 Identities=37% Similarity=0.588 Sum_probs=17.1
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|+|+.||||||+.+.|...
T Consensus 9 i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 9 LTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEESSSSSCHHHHHHHHHS
T ss_pred EEecCCCCHHHHHHHHHhh
Confidence 5799999999999999854
No 325
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.16 E-value=0.0016 Score=47.48 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|.+||||||+...|+..+
T Consensus 35 i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 35 IMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEECTTSCHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 57999999999999998764
No 326
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.15 E-value=0.016 Score=47.19 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=17.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|.||+||||++..++...
T Consensus 202 IaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 202 IAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp EEECSSSSHHHHHHHHHHHH
T ss_pred EEeCCCCChHHHHHHHHHHH
Confidence 57999999999999987654
No 327
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.15 E-value=0.0016 Score=52.58 Aligned_cols=21 Identities=38% Similarity=0.419 Sum_probs=18.6
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|+|++||||||+.+.|...++
T Consensus 172 I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 172 VTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EECSTTSCHHHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHhhcC
Confidence 579999999999999987764
No 328
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.14 E-value=0.00089 Score=49.56 Aligned_cols=20 Identities=45% Similarity=0.634 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.||+||||||+.+.|+-.+
T Consensus 32 i~GpnGsGKSTll~~i~g~~ 51 (227)
T 1qhl_A 32 LSGGNGAGKSTTMAAFVTAL 51 (227)
T ss_dssp HHSCCSHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhccc
Confidence 47999999999999998665
No 329
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.13 E-value=0.0017 Score=50.18 Aligned_cols=20 Identities=25% Similarity=0.537 Sum_probs=17.4
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|++||||||+.+.|. .+.
T Consensus 170 l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 170 LAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp EECSTTSSHHHHHHHHH-SCC
T ss_pred EECCCCCCHHHHHHHHH-Hhh
Confidence 47999999999999998 543
No 330
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.12 E-value=0.0017 Score=51.28 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=17.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+...
T Consensus 220 lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 220 FAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp EECCTTSSHHHHHHHHHCCS
T ss_pred EECCCCccHHHHHHHHhccc
Confidence 57999999999999998543
No 331
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.12 E-value=0.0017 Score=51.34 Aligned_cols=28 Identities=36% Similarity=0.640 Sum_probs=21.8
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--Cceechh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d 28 (203)
|+|+|||||||++..|+..+ | +.+++.|
T Consensus 84 i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 84 ITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp EECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 57999999999999998765 3 3355555
No 332
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=96.12 E-value=0.0037 Score=51.14 Aligned_cols=50 Identities=8% Similarity=0.062 Sum_probs=31.4
Q ss_pred HHHHHHHHhhCCCcEEEeCCCCchHhHHHHHHHHHhhCCeEEEEEecCCCHHHHHHH
Q 039424 70 IWKIASTQLKLGVSVVVDSPLSRRAHLEKLVKLAGEMRAGLVIVECKPSDEAEWRRR 126 (203)
Q Consensus 70 l~~~~~~~l~~~~~vIid~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~e~~~~R 126 (203)
..+.+...+.+|+.+|+|-.. +....++ .....| ++||+.+|..+.++++
T Consensus 270 s~~~V~~vl~~Gk~~iLdId~---qg~~~l~---~~~~~p-~~IFI~PPS~e~L~~~ 319 (468)
T 3shw_A 270 RLHTIKQIIDQDKHALLDVTP---NAVDRLN---YAQWYP-IVVFLNPDSKQGVKTM 319 (468)
T ss_dssp CHHHHHHHHTTTCEEEECCCH---HHHHHHH---HTTCCC-EEEEEECSCHHHHHHH
T ss_pred cHHHHHHHHHCCCeEEEEeCH---HHHHHHH---hcCCCC-EEEEEeCcCHHHHHHH
Confidence 345677778899999999732 2222322 222334 5788887777777764
No 333
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.12 E-value=0.0015 Score=52.55 Aligned_cols=17 Identities=41% Similarity=0.528 Sum_probs=15.4
Q ss_pred CCCCCCCChHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIA 17 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~ 17 (203)
|.|+|||||||++..|+
T Consensus 183 I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 183 LFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EEESTTSSHHHHHHHHH
T ss_pred EEcCCCCChHHHHHHHH
Confidence 57999999999999876
No 334
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.11 E-value=0.0016 Score=53.30 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+++.|+..+
T Consensus 143 IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 143 IVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp EEESTTSSHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhCcc
Confidence 57999999999999998765
No 335
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.10 E-value=0.00084 Score=53.05 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.||+||||||+.+.|+..+
T Consensus 36 llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 36 ILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EECSCHHHHHHHHHHHHTSS
T ss_pred EECCCCCcHHHHHHHHhCCC
Confidence 47999999999999999654
No 336
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.08 E-value=0.0015 Score=51.58 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=21.9
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--Cceechhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~ 29 (203)
|.|+|||||||++..++..+ + +.+++...
T Consensus 66 I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 66 IFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 46999999999999998664 3 34666543
No 337
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.08 E-value=0.0022 Score=47.56 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=15.6
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|+||+||||+|..++.
T Consensus 35 i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 35 LTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHH
Confidence 579999999999988754
No 338
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.08 E-value=0.0018 Score=50.44 Aligned_cols=30 Identities=27% Similarity=0.369 Sum_probs=22.8
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~ 30 (203)
|+|++||||||++..|+..+ | +.+++.|..
T Consensus 110 ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 110 LVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 47999999999999998766 3 335666643
No 339
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.07 E-value=0.0016 Score=52.88 Aligned_cols=30 Identities=37% Similarity=0.501 Sum_probs=23.7
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~~i~~d~~ 30 (203)
|+|++||||||++..|+..+ ...+++.|..
T Consensus 104 ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 104 LVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp EECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred EECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 47999999999999999765 3556777644
No 340
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.07 E-value=0.032 Score=46.06 Aligned_cols=20 Identities=20% Similarity=0.106 Sum_probs=17.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||++..++...
T Consensus 247 i~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 247 VTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp EEESSCHHHHHHHHHHHHHH
T ss_pred EeecCCCCchHHHHHHHHHH
Confidence 47999999999999998654
No 341
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.07 E-value=0.0019 Score=46.46 Aligned_cols=20 Identities=20% Similarity=-0.002 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
++|++||||||.+-.++.++
T Consensus 13 ~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 13 IVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp EECSTTSSHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHHH
Confidence 47999999999999998877
No 342
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.06 E-value=0.002 Score=56.03 Aligned_cols=31 Identities=32% Similarity=0.509 Sum_probs=23.7
Q ss_pred CCCCCCCChHHHHHHHHHhC---C--CceechhhHh
Q 039424 1 MKGHPGTGKSTLADAIASAL---K--IPLIDKDDVR 31 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~--~~~i~~d~~~ 31 (203)
|.|+||+|||++|+.|++.+ + +..+++..+.
T Consensus 526 l~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 526 FLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp EESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred EECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 57999999999999999886 3 3345555553
No 343
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.05 E-value=0.0017 Score=46.01 Aligned_cols=18 Identities=33% Similarity=0.673 Sum_probs=16.3
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|.+||||||+.++|+.
T Consensus 7 ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 7 IVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EESCTTSSHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 579999999999999985
No 344
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.03 E-value=0.0023 Score=43.79 Aligned_cols=19 Identities=32% Similarity=0.599 Sum_probs=17.0
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
+.|.+||||||+..+|...
T Consensus 6 v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 6 IVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EECCTTSSHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4799999999999999865
No 345
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.99 E-value=0.0024 Score=43.97 Aligned_cols=19 Identities=21% Similarity=0.401 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 10 v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 10 VVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EECSTTSSHHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHHcC
Confidence 4799999999999999854
No 346
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.98 E-value=0.0022 Score=55.76 Aligned_cols=20 Identities=30% Similarity=0.659 Sum_probs=18.4
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+||+||||+++.|++.+
T Consensus 212 L~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 212 LVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999999876
No 347
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.96 E-value=0.0022 Score=48.02 Aligned_cols=28 Identities=29% Similarity=0.576 Sum_probs=21.5
Q ss_pred CCCCCCCChHHHHHHHHHhC--C--Cceechh
Q 039424 1 MKGHPGTGKSTLADAIASAL--K--IPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~--~--~~~i~~d 28 (203)
++|.+||||||++..|+..+ | ..+++.|
T Consensus 19 ~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 19 FVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp EECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred EeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46999999999999998654 3 3456655
No 348
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.91 E-value=0.0025 Score=44.96 Aligned_cols=19 Identities=37% Similarity=0.700 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|++||||||+.+.|...
T Consensus 12 lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 12 LIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EECSTTSSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5799999999999999853
No 349
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.91 E-value=0.0022 Score=56.55 Aligned_cols=20 Identities=40% Similarity=0.689 Sum_probs=18.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+|||++|+.|++.+
T Consensus 593 l~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 593 FLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EBSCSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 57999999999999999887
No 350
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.91 E-value=0.0023 Score=52.30 Aligned_cols=20 Identities=45% Similarity=0.684 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+||+||||++..++..+
T Consensus 50 i~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 50 INGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHH
Confidence 57999999999999998776
No 351
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.91 E-value=0.0028 Score=43.45 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 8 v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 8 VLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4799999999999998754
No 352
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.91 E-value=0.0019 Score=49.90 Aligned_cols=19 Identities=47% Similarity=0.721 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|++||||||+.+.|+..
T Consensus 174 l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 174 MAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp EECSTTSSHHHHHHHHSTT
T ss_pred EECCCCCcHHHHHHHhccc
Confidence 4799999999999999743
No 353
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.89 E-value=0.0021 Score=50.65 Aligned_cols=29 Identities=24% Similarity=0.349 Sum_probs=21.8
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCceechhh
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIPLIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~~i~~d~ 29 (203)
|.|+|||||||++..++... .+.+++...
T Consensus 66 I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 66 IYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 47999999999999998543 245666653
No 354
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.88 E-value=0.0025 Score=46.56 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|.+||||||+...|+..+
T Consensus 43 ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 43 FMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHh
Confidence 47999999999999998764
No 355
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.87 E-value=0.0036 Score=46.19 Aligned_cols=29 Identities=21% Similarity=0.170 Sum_probs=21.7
Q ss_pred CCCCCCCChHHHHHHHHHhC---CCc--eechhh
Q 039424 1 MKGHPGTGKSTLADAIASAL---KIP--LIDKDD 29 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~---~~~--~i~~d~ 29 (203)
+.|+||+||||++-.++..+ |+. +++.|.
T Consensus 11 ~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 11 LGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 46899999999988887665 544 456653
No 356
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.86 E-value=0.0022 Score=53.19 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=18.3
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|+|++||||||+.+.|...+.
T Consensus 265 I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 265 VVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp EEESTTSSHHHHHHHHGGGSC
T ss_pred EECCCCCCHHHHHHHHHhhCC
Confidence 579999999999999987663
No 357
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.86 E-value=0.0024 Score=44.77 Aligned_cols=19 Identities=42% Similarity=0.768 Sum_probs=16.9
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.|||||||+..+|...
T Consensus 9 ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 9 IAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEESTTSSHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5799999999999999854
No 358
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.85 E-value=0.0029 Score=43.51 Aligned_cols=20 Identities=50% Similarity=0.752 Sum_probs=16.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+.||||||+..+|.--+
T Consensus 28 I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 28 IIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 57999999999999987433
No 359
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.85 E-value=0.0029 Score=49.29 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=21.9
Q ss_pred CCCCCCCChHHHHHHHHHhCC--Cceechh
Q 039424 1 MKGHPGTGKSTLADAIASALK--IPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~--~~~i~~d 28 (203)
|.|++|+||||+++.+++..+ +.+++..
T Consensus 35 i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 35 VLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp EEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred EECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 579999999999999998764 3355544
No 360
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.83 E-value=0.0031 Score=43.29 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
+.|.+||||||+...|...
T Consensus 9 v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 9 MVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 4799999999999999854
No 361
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.82 E-value=0.0025 Score=51.57 Aligned_cols=19 Identities=42% Similarity=0.613 Sum_probs=16.9
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|++||||||+.+.|+..
T Consensus 47 LvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 47 CVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EECSTTSSSHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHhCc
Confidence 5799999999999999854
No 362
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.82 E-value=0.0027 Score=43.45 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
+.|.+||||||+...|...
T Consensus 8 v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 8 VVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 4799999999999999854
No 363
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.80 E-value=0.003 Score=49.70 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=17.2
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|+|||||||+|..++..
T Consensus 127 I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 127 AFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EECCTTCTHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999999875
No 364
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.79 E-value=0.0032 Score=43.75 Aligned_cols=19 Identities=42% Similarity=0.768 Sum_probs=16.5
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+|+||||+..+|...
T Consensus 9 i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 9 LLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EECCTTSSHHHHHHHHHCC
T ss_pred EECCCCccHHHHHHHHhcC
Confidence 5799999999999999743
No 365
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.75 E-value=0.0035 Score=44.43 Aligned_cols=19 Identities=21% Similarity=0.497 Sum_probs=16.9
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|++||||||+...|...
T Consensus 53 vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 53 IAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4799999999999999854
No 366
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.75 E-value=0.0036 Score=43.72 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 13 v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 13 ILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 4799999999999999754
No 367
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.75 E-value=0.0036 Score=43.60 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 12 v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 12 LLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 5799999999999999754
No 368
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.74 E-value=0.003 Score=53.18 Aligned_cols=20 Identities=50% Similarity=0.752 Sum_probs=17.4
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+||+||||++..+...+
T Consensus 209 I~G~pGTGKTt~i~~l~~~l 228 (574)
T 3e1s_A 209 LTGGPGTGKSTTTKAVADLA 228 (574)
T ss_dssp EECCTTSCHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999998654
No 369
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.74 E-value=0.0037 Score=43.14 Aligned_cols=19 Identities=26% Similarity=0.443 Sum_probs=16.9
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 11 v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 11 LLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHHcC
Confidence 4799999999999999865
No 370
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.74 E-value=0.0014 Score=47.35 Aligned_cols=18 Identities=22% Similarity=0.519 Sum_probs=15.8
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|++||||||+.+.|+.
T Consensus 31 lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 31 FAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp EEECTTSSHHHHHTTTCC
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 579999999999998864
No 371
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.72 E-value=0.0037 Score=43.07 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 8 v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 8 LLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4799999999999999754
No 372
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.72 E-value=0.0034 Score=43.34 Aligned_cols=18 Identities=44% Similarity=0.715 Sum_probs=16.0
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|.+||||||+...|..
T Consensus 7 ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 7 LVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EECSTTSSHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 479999999999999963
No 373
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.71 E-value=0.0038 Score=43.11 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 11 v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 11 LLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EECCTTSCHHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHHcC
Confidence 4799999999999999854
No 374
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.71 E-value=0.0037 Score=42.94 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 8 v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 8 VLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EECSTTSSHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4799999999999999853
No 375
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.70 E-value=0.0037 Score=45.36 Aligned_cols=20 Identities=20% Similarity=0.438 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+...|....
T Consensus 17 ~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 17 IAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EECSTTSSHHHHHHHHHHSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999998654
No 376
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0036 Score=43.19 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=16.2
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
+.|.+||||||+...|..
T Consensus 8 v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 8 VFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EECCTTSSHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHHc
Confidence 479999999999999975
No 377
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.70 E-value=0.0032 Score=53.12 Aligned_cols=20 Identities=35% Similarity=0.610 Sum_probs=18.0
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 374 ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 374 LVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999998765
No 378
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.69 E-value=0.0034 Score=51.60 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 34 liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 34 LSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 57999999999999998654
No 379
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.69 E-value=0.0034 Score=48.31 Aligned_cols=20 Identities=35% Similarity=0.481 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
++|++|+||||++..|+..+
T Consensus 103 i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 103 LVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp EECCTTTTHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHH
Confidence 46999999999999998765
No 380
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.68 E-value=0.0029 Score=49.26 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.5
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+|||||||+|..++...
T Consensus 112 i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 112 FFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EEESTTSSHHHHHHHHHHHT
T ss_pred EECCCCCCHhHHHHHHHHHH
Confidence 57999999999999998753
No 381
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.67 E-value=0.004 Score=43.41 Aligned_cols=19 Identities=26% Similarity=0.499 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 11 v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 11 VLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EECCTTSSHHHHHHHHHGG
T ss_pred EECcCCCCHHHHHHHHHhC
Confidence 4799999999999999753
No 382
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.66 E-value=0.003 Score=49.64 Aligned_cols=20 Identities=45% Similarity=0.768 Sum_probs=17.4
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|+|||||||+...|+..+
T Consensus 61 i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 61 VTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEECTTSCHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 47999999999999998654
No 383
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.66 E-value=0.0029 Score=43.55 Aligned_cols=17 Identities=47% Similarity=0.786 Sum_probs=15.4
Q ss_pred CCCCCCCChHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIA 17 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~ 17 (203)
|.|.+||||||+..+|.
T Consensus 7 ~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 7 LLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEESTTSSHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHc
Confidence 47999999999999886
No 384
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.66 E-value=0.0041 Score=44.04 Aligned_cols=21 Identities=29% Similarity=0.161 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|.+||||||+.+.|...+.
T Consensus 19 vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 19 YYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EECSTTSSHHHHHHHHHHTSC
T ss_pred EECCCCCCHHHHHHHHHhhcc
Confidence 479999999999998876653
No 385
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.65 E-value=0.0035 Score=52.34 Aligned_cols=20 Identities=45% Similarity=0.617 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 52 LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 52 IVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999654
No 386
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.64 E-value=0.0032 Score=50.79 Aligned_cols=19 Identities=26% Similarity=0.635 Sum_probs=17.0
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|++||||||+.+.|+..
T Consensus 74 lvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 74 VTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEECTTSSHHHHHHHHHTC
T ss_pred EECCCCCcHHHHHHHHhCC
Confidence 4799999999999999864
No 387
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.61 E-value=0.0036 Score=43.14 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 8 v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 8 LIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEESTTSSHHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHHhC
Confidence 4799999999999999743
No 388
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.61 E-value=0.0043 Score=42.72 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 11 v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 11 LLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4799999999999999853
No 389
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.55 E-value=0.0045 Score=48.92 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=21.7
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCceechh
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIPLIDKD 28 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~~i~~d 28 (203)
|.|+||+||||+|..++... .+.++++.
T Consensus 68 I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 68 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred EECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 47999999999999998653 34567763
No 390
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=95.55 E-value=0.0016 Score=55.04 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.2
Q ss_pred CCCCCCCChHHHHHHHHHhCCCce
Q 039424 1 MKGHPGTGKSTLADAIASALKIPL 24 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~~~~ 24 (203)
|.|+||+|||++|+.+++.++...
T Consensus 332 L~GppGtGKT~LAr~la~~~~r~~ 355 (595)
T 3f9v_A 332 IIGDPGTAKSQMLQFISRVAPRAV 355 (595)
T ss_dssp EEESSCCTHHHHHHSSSTTCSCEE
T ss_pred EECCCchHHHHHHHHHHHhCCCce
Confidence 479999999999999998876433
No 391
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=95.54 E-value=0.0056 Score=51.90 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=17.2
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|+|++||||||+.+.|+..
T Consensus 50 IvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 50 VIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCCCTTSCHHHHHHHHHSC
T ss_pred EECCCCChHHHHHHHHhCC
Confidence 6899999999999999854
No 392
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.54 E-value=0.005 Score=42.26 Aligned_cols=19 Identities=26% Similarity=0.365 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
+.|.+||||||+...|...
T Consensus 5 ~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 5 MVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4799999999999999754
No 393
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.54 E-value=0.0046 Score=43.68 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.9
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
+.|.+||||||+...|...
T Consensus 26 vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 26 VVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHHcC
Confidence 4799999999999999854
No 394
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.53 E-value=0.0048 Score=42.62 Aligned_cols=19 Identities=26% Similarity=0.452 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 12 v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 12 ILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4799999999999999753
No 395
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.52 E-value=0.0037 Score=48.58 Aligned_cols=19 Identities=21% Similarity=0.372 Sum_probs=16.9
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|+|||||||+|..++..
T Consensus 103 i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 103 FAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEESTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 5799999999999999864
No 396
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.51 E-value=0.0036 Score=52.09 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=14.5
Q ss_pred CCCCCCCChHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAI 16 (203)
Q Consensus 1 i~G~pGsGKST~a~~L 16 (203)
|.|++||||||+++.+
T Consensus 44 l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 44 VSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EEESTTSSHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHH
Confidence 5799999999999994
No 397
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.51 E-value=0.0029 Score=53.35 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 374 ivG~sGsGKSTLl~~l~g~~ 393 (582)
T 3b60_A 374 LVGRSGSGKSTIASLITRFY 393 (582)
T ss_dssp EEECTTSSHHHHHHHHTTTT
T ss_pred EECCCCCCHHHHHHHHhhcc
Confidence 57999999999999998765
No 398
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.51 E-value=0.0048 Score=42.89 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.9
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 20 v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 20 IIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4799999999999999854
No 399
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.51 E-value=0.0048 Score=43.50 Aligned_cols=19 Identities=21% Similarity=0.396 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 16 v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 16 ALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4799999999999999853
No 400
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.50 E-value=0.0048 Score=48.61 Aligned_cols=21 Identities=33% Similarity=0.427 Sum_probs=18.8
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|++||||||+.+.|+....
T Consensus 76 IiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 76 IFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EEECTTSSHHHHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHhcCCC
Confidence 469999999999999998764
No 401
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.49 E-value=0.0048 Score=42.97 Aligned_cols=18 Identities=50% Similarity=0.715 Sum_probs=16.2
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|.+||||||+...|..
T Consensus 13 v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 13 IMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp EESCTTTTHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 479999999999999975
No 402
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.48 E-value=0.0051 Score=43.23 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 9 v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 9 VVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 4799999999999999854
No 403
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.47 E-value=0.0045 Score=43.17 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=16.9
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 14 v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 14 VVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEECTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 4799999999999999865
No 404
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.47 E-value=0.0045 Score=43.14 Aligned_cols=18 Identities=39% Similarity=0.556 Sum_probs=15.9
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|.+||||||+...|..
T Consensus 14 v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 14 IIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EECCTTSCHHHHHHHHCS
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 479999999999999864
No 405
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.46 E-value=0.0044 Score=43.71 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=16.9
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 12 v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 12 VVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4799999999999999864
No 406
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.46 E-value=0.0052 Score=43.63 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=17.0
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 12 v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 12 LLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 5799999999999999865
No 407
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.45 E-value=0.005 Score=50.06 Aligned_cols=21 Identities=29% Similarity=0.377 Sum_probs=18.7
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|.|++||||||+.+.|+....
T Consensus 162 IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 162 LFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp EEECTTSSHHHHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHhcccC
Confidence 469999999999999998764
No 408
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.44 E-value=0.0053 Score=43.54 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 30 v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 30 LIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EESSTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHhcC
Confidence 5799999999999999854
No 409
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.42 E-value=0.0046 Score=43.99 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
+.|.+||||||+..+|...
T Consensus 28 ~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 28 FLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4799999999999999863
No 410
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.40 E-value=0.004 Score=51.99 Aligned_cols=20 Identities=30% Similarity=0.582 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+.||||||+.+.|+..+
T Consensus 30 LiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 30 VLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 57999999999999998654
No 411
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.39 E-value=0.0057 Score=42.70 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 17 v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 17 LLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EECCTTSCHHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHHcC
Confidence 4799999999999999754
No 412
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.38 E-value=0.0036 Score=48.26 Aligned_cols=18 Identities=39% Similarity=0.593 Sum_probs=15.9
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|++||||||+.+.|..
T Consensus 23 lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 23 VVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEETTSSHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHhC
Confidence 479999999999999863
No 413
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.37 E-value=0.0058 Score=42.82 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 23 v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 23 MVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhhC
Confidence 4799999999999999854
No 414
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=95.37 E-value=0.0015 Score=50.65 Aligned_cols=19 Identities=42% Similarity=0.744 Sum_probs=16.1
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|+|||||||+.+.|...
T Consensus 178 lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 178 FAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp EEESHHHHHHHHHHHHCC-
T ss_pred EECCCCCCHHHHHHHhccc
Confidence 5799999999999999743
No 415
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.36 E-value=0.0058 Score=42.61 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 15 v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 15 LVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHHhC
Confidence 4799999999999999754
No 416
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.35 E-value=0.0052 Score=52.06 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 108 LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 108 LVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCChHHHHHHHHhcCC
Confidence 57999999999999999655
No 417
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.34 E-value=0.006 Score=42.75 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 10 ~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 10 VVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4799999999999999753
No 418
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.34 E-value=0.0033 Score=53.18 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 386 ivG~sGsGKSTll~~l~g~~ 405 (598)
T 3qf4_B 386 LVGPTGSGKTTIVNLLMRFY 405 (598)
T ss_dssp EECCTTSSTTHHHHHHTTSS
T ss_pred EECCCCCcHHHHHHHHhcCc
Confidence 57999999999999998665
No 419
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=95.33 E-value=0.0051 Score=43.19 Aligned_cols=19 Identities=37% Similarity=0.548 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 15 v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 15 VIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4799999999999999754
No 420
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.33 E-value=0.0044 Score=43.96 Aligned_cols=19 Identities=21% Similarity=0.539 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 28 v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 28 LAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEBTTSSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4799999999999999754
No 421
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.32 E-value=0.0044 Score=51.72 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 299 i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 299 ILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 422
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.32 E-value=0.0045 Score=43.64 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 6 v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 6 FAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEBTTSSHHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHhCc
Confidence 4799999999999999754
No 423
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.31 E-value=0.0063 Score=43.06 Aligned_cols=19 Identities=26% Similarity=0.436 Sum_probs=16.2
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 25 ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 25 IVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EECCTTSCHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5799999999999887754
No 424
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.30 E-value=0.0058 Score=42.83 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.9
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 23 v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 23 VVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 5799999999999999854
No 425
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.30 E-value=0.005 Score=42.83 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=16.5
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 19 v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 19 FLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4799999999999999743
No 426
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.30 E-value=0.0048 Score=46.66 Aligned_cols=19 Identities=32% Similarity=0.674 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.|||||||+...|...
T Consensus 8 lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 8 LVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEECSSSSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4799999999999999754
No 427
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.29 E-value=0.0033 Score=53.13 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 375 ivG~sGsGKSTLl~~l~g~~ 394 (595)
T 2yl4_A 375 LVGPSGSGKSTVLSLLLRLY 394 (595)
T ss_dssp EECCTTSSSTHHHHHHTTSS
T ss_pred EECCCCCCHHHHHHHHhcCc
Confidence 57999999999999998665
No 428
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.27 E-value=0.0066 Score=43.47 Aligned_cols=19 Identities=26% Similarity=0.569 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 13 v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 13 ILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHHcC
Confidence 4799999999999999754
No 429
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.26 E-value=0.0057 Score=47.13 Aligned_cols=19 Identities=37% Similarity=0.648 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.|||||||+...|...
T Consensus 13 IvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 13 IVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EECSSSSSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHHCC
Confidence 5799999999999999843
No 430
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.25 E-value=0.0058 Score=51.02 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+.||||||+.+.|+..+
T Consensus 317 i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 317 IVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCCCHHHHHHHHhCCC
Confidence 57999999999999998654
No 431
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.24 E-value=0.0049 Score=49.80 Aligned_cols=19 Identities=37% Similarity=0.573 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|++||||||+.+.|+..
T Consensus 36 lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 36 VVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EECCTTSSHHHHHHHHTTC
T ss_pred EECCCCCcHHHHHHHHhCC
Confidence 5799999999999999854
No 432
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.24 E-value=0.006 Score=44.57 Aligned_cols=20 Identities=20% Similarity=-0.012 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
++|++||||||.+-.++.++
T Consensus 33 itG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 33 ICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp EECSTTSCHHHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHHHH
Confidence 47999999999999988776
No 433
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.24 E-value=0.0067 Score=42.88 Aligned_cols=19 Identities=21% Similarity=0.347 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 27 vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 27 LIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 5799999999999999754
No 434
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.22 E-value=0.0064 Score=44.98 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 34 lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 34 LVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EECCTTSSHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHcCC
Confidence 5799999999999999853
No 435
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.22 E-value=0.007 Score=43.10 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 33 v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 33 IFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 4799999999999999854
No 436
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.19 E-value=0.0052 Score=43.28 Aligned_cols=19 Identities=37% Similarity=0.527 Sum_probs=16.5
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 21 ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 21 LLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEESTTSSHHHHHHHHCCS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4799999999999999754
No 437
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.18 E-value=0.0071 Score=43.22 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 19 v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 19 MVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 4799999999999999754
No 438
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.18 E-value=0.0055 Score=50.99 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=17.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+|||||||+++.++...
T Consensus 286 i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 286 ATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp EEECTTSSHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHH
Confidence 47999999999999998654
No 439
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.17 E-value=0.0052 Score=52.05 Aligned_cols=20 Identities=40% Similarity=0.606 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 122 LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 122 IVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EECCTTSSHHHHHHHHTTSS
T ss_pred EECCCCChHHHHHHHHhCCC
Confidence 57999999999999998654
No 440
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.16 E-value=0.0073 Score=42.79 Aligned_cols=19 Identities=37% Similarity=0.492 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 21 v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 21 LIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHHcC
Confidence 4799999999999999854
No 441
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.16 E-value=0.0026 Score=53.56 Aligned_cols=20 Identities=40% Similarity=0.527 Sum_probs=17.8
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 372 ivG~sGsGKSTll~~l~g~~ 391 (578)
T 4a82_A 372 FVGMSGGGKSTLINLIPRFY 391 (578)
T ss_dssp EECSTTSSHHHHHTTTTTSS
T ss_pred EECCCCChHHHHHHHHhcCC
Confidence 57999999999999998665
No 442
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.16 E-value=0.0075 Score=42.69 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 26 vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 26 ILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCcHHHHHHHHHhC
Confidence 5799999999999998754
No 443
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.15 E-value=0.0074 Score=42.15 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+|+||||+...|...
T Consensus 13 v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 13 TVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4799999999999999854
No 444
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.15 E-value=0.0076 Score=42.60 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 25 v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 25 VIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EECCTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4799999999999999753
No 445
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.15 E-value=0.0063 Score=47.25 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=15.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|+||+||||+|-.++..
T Consensus 33 I~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 33 LAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEESSSSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4699999999998887544
No 446
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.14 E-value=0.0065 Score=51.45 Aligned_cols=20 Identities=30% Similarity=0.501 Sum_probs=17.7
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|+.||||||+.+.|+..+
T Consensus 387 i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 387 IVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EECCTTSSHHHHHHHHHTSS
T ss_pred EECCCCCCHHHHHHHHhcCC
Confidence 57999999999999998654
No 447
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.13 E-value=0.0075 Score=42.65 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 27 v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 27 LVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 5799999999999999853
No 448
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.13 E-value=0.0066 Score=48.46 Aligned_cols=20 Identities=30% Similarity=0.386 Sum_probs=17.2
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+++.|...+
T Consensus 40 i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 40 ILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp EECCTTSSHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999997653
No 449
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.12 E-value=0.0055 Score=43.28 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 28 v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 28 FVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEBTTSSHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4799999999999999754
No 450
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.12 E-value=0.0067 Score=43.09 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 28 vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 28 LLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEECTTSSHHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHhcC
Confidence 4799999999999999754
No 451
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.10 E-value=0.0068 Score=42.66 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
+.|.+||||||+...|...
T Consensus 23 v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 23 MLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EECSTTSSHHHHHHHHTTC
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4799999999999999753
No 452
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.10 E-value=0.0072 Score=43.19 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 13 v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 13 IIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EECSTTSSHHHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 5799999999999999753
No 453
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.09 E-value=0.008 Score=42.60 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 26 v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 26 IIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EESSTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHhcC
Confidence 4799999999999999854
No 454
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.09 E-value=0.0079 Score=42.51 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 20 v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 20 IIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHcC
Confidence 4799999999999999754
No 455
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.08 E-value=0.0071 Score=42.86 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=17.3
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|.+||||||+...|....
T Consensus 28 v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 28 IIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEESTTSSHHHHHHHHHHHT
T ss_pred EECCCCcCHHHHHHHHhcCC
Confidence 57999999999999998653
No 456
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.08 E-value=0.0072 Score=47.91 Aligned_cols=18 Identities=44% Similarity=0.689 Sum_probs=16.0
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|+|+.||||||+...++-
T Consensus 28 i~G~NGaGKTTll~ai~~ 45 (365)
T 3qf7_A 28 VEGPNGAGKSSLFEAISF 45 (365)
T ss_dssp EECCTTSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHH
Confidence 589999999999998873
No 457
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.07 E-value=0.0064 Score=42.53 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.5
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 11 ~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 11 ILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHHcC
Confidence 4799999999999999843
No 458
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.07 E-value=0.0071 Score=51.20 Aligned_cols=20 Identities=55% Similarity=0.773 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|++||||||+.+.|+..+
T Consensus 383 iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 383 MMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EESCTTSSHHHHHHHHHTSS
T ss_pred EECCCCCcHHHHHHHHhcCC
Confidence 47999999999999998654
No 459
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.07 E-value=0.0055 Score=42.73 Aligned_cols=19 Identities=26% Similarity=0.450 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 12 ~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 12 VLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EECCGGGCHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 4799999999999999854
No 460
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.06 E-value=0.0082 Score=42.87 Aligned_cols=19 Identities=21% Similarity=0.422 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 33 v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 33 LAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EESSTTSSHHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHHhC
Confidence 5799999999999999754
No 461
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.04 E-value=0.0057 Score=43.74 Aligned_cols=17 Identities=47% Similarity=0.749 Sum_probs=15.4
Q ss_pred CCCCCCCChHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIA 17 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~ 17 (203)
|.|.+||||||+..+|.
T Consensus 28 vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 28 LVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EECSTTSSHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHH
Confidence 57999999999999985
No 462
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.03 E-value=0.0071 Score=43.54 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 31 lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 31 LIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHHhC
Confidence 5799999999999999754
No 463
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.03 E-value=0.0051 Score=44.10 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=15.9
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
+.|.+||||||+..+|..
T Consensus 30 lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 30 FLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEETTSSHHHHHHHHSC
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 479999999999999963
No 464
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.02 E-value=0.0036 Score=52.81 Aligned_cols=20 Identities=40% Similarity=0.654 Sum_probs=17.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|+|++||||||+.+.|+..+
T Consensus 374 ivG~sGsGKSTll~~l~g~~ 393 (587)
T 3qf4_A 374 VLGETGSGKSTLMNLIPRLI 393 (587)
T ss_dssp EECSSSSSHHHHHHTTTTSS
T ss_pred EECCCCCCHHHHHHHHhCCc
Confidence 57999999999999998665
No 465
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.01 E-value=0.0086 Score=42.50 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=16.9
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+|+||||+...|...
T Consensus 28 ~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 28 VVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHhcC
Confidence 4799999999999999864
No 466
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.00 E-value=0.0073 Score=43.21 Aligned_cols=19 Identities=26% Similarity=0.406 Sum_probs=16.9
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 29 vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 29 ILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECCCCcCHHHHHHHHHhC
Confidence 4799999999999999854
No 467
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.99 E-value=0.0074 Score=43.57 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=16.9
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 33 vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 33 VVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4799999999999999864
No 468
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.98 E-value=0.0082 Score=42.78 Aligned_cols=19 Identities=47% Similarity=0.707 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.||+||||+..+|...
T Consensus 11 lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 11 LIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EECSTTSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4799999999999999854
No 469
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.97 E-value=0.0088 Score=43.17 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 12 vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 12 FVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EECSTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 4799999999999999854
No 470
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=94.96 E-value=0.0075 Score=47.79 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=15.7
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|.+||||||+++++.-
T Consensus 38 llG~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 38 LLGAGESGKSTFLKQMRI 55 (362)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHH
Confidence 469999999999999953
No 471
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.96 E-value=0.0078 Score=42.73 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=16.3
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|.+||||||+...|..
T Consensus 13 vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 13 VFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEECTTSSHHHHHHHHHH
T ss_pred EECCCCCcHHHHHHHHHc
Confidence 479999999999999975
No 472
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.95 E-value=0.0086 Score=43.34 Aligned_cols=21 Identities=48% Similarity=0.683 Sum_probs=17.6
Q ss_pred CCCCCCCChHHHHHHHHHhCC
Q 039424 1 MKGHPGTGKSTLADAIASALK 21 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~~ 21 (203)
|+|+.||||||+...|.--++
T Consensus 28 I~G~NgsGKStil~ai~~~l~ 48 (203)
T 3qks_A 28 IIGQNGSGKSSLLDAILVGLY 48 (203)
T ss_dssp EECCTTSSHHHHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHHHhc
Confidence 579999999999999975553
No 473
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.94 E-value=0.0044 Score=43.42 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=15.2
Q ss_pred CCCCCCCChHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIA 17 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~ 17 (203)
|.|.+||||||+...|.
T Consensus 23 v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 23 ILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEETTSSHHHHHHHTC
T ss_pred EECCCCCCHHHHHHHHh
Confidence 47999999999998886
No 474
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.92 E-value=0.0075 Score=42.56 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=16.2
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|.+||||||+..+|..
T Consensus 21 v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 21 IVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp EEESTTSSHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 479999999999999984
No 475
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.89 E-value=0.047 Score=51.36 Aligned_cols=100 Identities=19% Similarity=0.215 Sum_probs=0.0
Q ss_pred CCCCCCCChHHHHHHHHHhC-----CCceechhhHhhhhhhhhhhhhccCCCccccchHHHHHhhhhhhhhHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIASAL-----KIPLIDKDDVRDCTLSLQQTLQKTTPHHQHATSAAAAASSLLNDLSYDVIWKIAS 75 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~-----~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 75 (203)
|.|+||+||||+|..++... .+.+++...-...+....-.+ ...............+...+.
T Consensus 388 I~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~~a~~lGv-------------d~~~L~i~~~~~~e~~l~~l~ 454 (1706)
T 3cmw_A 388 IYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGV-------------DIDNLLCSQPDTGEQALEICD 454 (1706)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTC-------------CGGGCEEECCSSHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHHHHHHcCC-------------CHHHeEEcCCCCHHHHHHHHH
Q ss_pred HHhhCCCc--EEEeC--CCCc--------------------hHhHHHHHHHHHhhCCeEEEE
Q 039424 76 TQLKLGVS--VVVDS--PLSR--------------------RAHLEKLVKLAGEMRAGLVIV 113 (203)
Q Consensus 76 ~~l~~~~~--vIid~--~~~~--------------------~~~~~~~~~~~~~~~~~~~~v 113 (203)
..+..+.. ||+|. .... ......+..+++..+++++++
T Consensus 455 ~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~i 516 (1706)
T 3cmw_A 455 ALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFI 516 (1706)
T ss_dssp HHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEE
No 476
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.89 E-value=0.0082 Score=43.05 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 13 v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 13 LIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEESTTSSHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4799999999999999754
No 477
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.88 E-value=0.0096 Score=42.79 Aligned_cols=19 Identities=32% Similarity=0.466 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 25 v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 25 LIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EECSTTSSHHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 5799999999999999843
No 478
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.88 E-value=0.0082 Score=51.22 Aligned_cols=19 Identities=42% Similarity=0.630 Sum_probs=14.2
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.||||+||||+...+...
T Consensus 210 I~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 210 IHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4699999999876555443
No 479
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.87 E-value=0.009 Score=49.94 Aligned_cols=18 Identities=39% Similarity=0.680 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|++|+||||+|+.+++
T Consensus 157 I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 157 LHGRAGSGKSVIASQALS 174 (549)
T ss_dssp EECSTTSSHHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHHH
Confidence 579999999999999995
No 480
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=94.85 E-value=0.0085 Score=48.62 Aligned_cols=30 Identities=30% Similarity=0.467 Sum_probs=22.8
Q ss_pred CCCCCCCChHHHHHHHHHhC----C--CceechhhH
Q 039424 1 MKGHPGTGKSTLADAIASAL----K--IPLIDKDDV 30 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~----~--~~~i~~d~~ 30 (203)
++|++||||||++..|+..+ | ..+++.|..
T Consensus 105 ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 105 MAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp EECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 46999999999999998554 4 345777754
No 481
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.83 E-value=0.0086 Score=50.76 Aligned_cols=20 Identities=45% Similarity=0.758 Sum_probs=16.0
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
++|+||+||||++..+...+
T Consensus 169 i~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 169 ISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp EECCTTSTHHHHHHHHHHHH
T ss_pred EEeCCCCCHHHHHHHHHHHH
Confidence 57999999999988775443
No 482
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=94.80 E-value=0.0085 Score=47.95 Aligned_cols=18 Identities=44% Similarity=0.650 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|+|||||||+.+.|..
T Consensus 25 iVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 25 IVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp EEECSSSSHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHC
Confidence 579999999999999986
No 483
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.80 E-value=0.0091 Score=42.41 Aligned_cols=18 Identities=28% Similarity=0.608 Sum_probs=15.9
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|.+||||||+...|..
T Consensus 31 vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 31 IIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EECSTTSSHHHHHHHHCC
T ss_pred EECCCCCCHHHHHHHHhc
Confidence 479999999999999863
No 484
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=94.79 E-value=0.0093 Score=50.09 Aligned_cols=17 Identities=41% Similarity=0.632 Sum_probs=15.5
Q ss_pred CCCCCCCChHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIA 17 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~ 17 (203)
|+|++|+||||+|..++
T Consensus 152 I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 152 IHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp EECCTTSSHHHHHHHHH
T ss_pred EEcCCCCCHHHHHHHHH
Confidence 57999999999999885
No 485
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.77 E-value=0.0086 Score=42.89 Aligned_cols=18 Identities=39% Similarity=0.560 Sum_probs=16.0
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|.+||||||+..+|..
T Consensus 30 v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 30 VIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEESTTSSHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHHh
Confidence 479999999999999974
No 486
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.76 E-value=0.008 Score=42.77 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.8
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|.+||||||+..+|..
T Consensus 34 v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 34 MVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp EEESTTSSHHHHHHHHCS
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 479999999999999863
No 487
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.74 E-value=0.01 Score=42.29 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=16.0
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|.+||||||+...|..
T Consensus 25 ~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 25 LVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EECSTTSSHHHHHHHHHC
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 479999999999999974
No 488
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.72 E-value=0.0098 Score=42.78 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=16.7
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 30 vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 30 VVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEECTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHhcC
Confidence 4799999999999999854
No 489
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.71 E-value=0.0057 Score=42.89 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=6.1
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|.+||||||+...|..
T Consensus 13 v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 13 LIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EECCCCC-----------
T ss_pred EECCCCCCHHHHHHHHHh
Confidence 479999999999999874
No 490
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.70 E-value=0.011 Score=42.72 Aligned_cols=18 Identities=28% Similarity=0.423 Sum_probs=16.2
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|.+||||||+...|..
T Consensus 30 vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 30 ALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EESCTTSSHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHhc
Confidence 579999999999999974
No 491
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=94.68 E-value=0.011 Score=44.89 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.|||||||+..+|...
T Consensus 8 lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 8 LIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EECCTTSSHHHHHHHHHCC
T ss_pred EECCCCCCHHHHHHHHHCC
Confidence 4799999999999999853
No 492
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.67 E-value=0.0091 Score=46.12 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=17.4
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.||||+||||+++.|++.
T Consensus 23 f~Gp~G~GKtt~a~~la~~ 41 (305)
T 2gno_A 23 INGEDLSYPREVSLELPEY 41 (305)
T ss_dssp EECSSSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHh
Confidence 4799999999999999975
No 493
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.67 E-value=0.012 Score=46.74 Aligned_cols=19 Identities=47% Similarity=0.700 Sum_probs=17.0
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.|||||||+...|...
T Consensus 6 IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 6 IVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EECCSSSSHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5799999999999999865
No 494
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.66 E-value=0.0078 Score=42.25 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 26 v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 26 IVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEETTSSHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHhcC
Confidence 4799999999999999853
No 495
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.65 E-value=0.0095 Score=44.58 Aligned_cols=19 Identities=37% Similarity=0.613 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 27 lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 27 LVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEECTTSCHHHHHHHHHTS
T ss_pred EECCCCCCHHHHHHHHhCC
Confidence 5799999999999999743
No 496
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.63 E-value=0.01 Score=42.44 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=16.8
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+...|...
T Consensus 30 vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 30 IVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHhC
Confidence 4799999999999999864
No 497
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.63 E-value=0.01 Score=50.41 Aligned_cols=19 Identities=37% Similarity=0.684 Sum_probs=15.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.||||+||||++..+...
T Consensus 200 i~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 200 IQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EECCTTSCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHH
Confidence 4699999999988777654
No 498
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=94.62 E-value=0.01 Score=42.59 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.6
Q ss_pred CCCCCCCChHHHHHHHHHh
Q 039424 1 MKGHPGTGKSTLADAIASA 19 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~ 19 (203)
|.|.+||||||+..+|...
T Consensus 35 vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 35 VVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEESTTSSHHHHHHHHHHS
T ss_pred EECcCCCCHHHHHHHHHhC
Confidence 4799999999999999853
No 499
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.62 E-value=0.0083 Score=42.78 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=16.9
Q ss_pred CCCCCCCChHHHHHHHHHhC
Q 039424 1 MKGHPGTGKSTLADAIASAL 20 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~~~ 20 (203)
|.|.+||||||+.+.|...+
T Consensus 25 ~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 25 LMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEESTTSSHHHHHHHHHSCC
T ss_pred EECCCCCCHHHHHHHHHhcC
Confidence 47999999999999887654
No 500
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.60 E-value=0.01 Score=43.01 Aligned_cols=18 Identities=33% Similarity=0.541 Sum_probs=16.1
Q ss_pred CCCCCCCChHHHHHHHHH
Q 039424 1 MKGHPGTGKSTLADAIAS 18 (203)
Q Consensus 1 i~G~pGsGKST~a~~L~~ 18 (203)
|.|.+||||||+...|..
T Consensus 39 vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 39 LVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEECTTSSHHHHHHHHHC
T ss_pred EECcCCCCHHHHHHHHHc
Confidence 479999999999999974
Done!