BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039426
(531 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YIJ|A Chain A, Crystal Structure Of Phospholipase A1
pdb|2YIJ|B Chain B, Crystal Structure Of Phospholipase A1
Length = 419
Score = 183 bits (464), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 133/389 (34%), Positives = 191/389 (49%), Gaps = 59/389 (15%)
Query: 143 LGSRWREYHGCKDWAGLLDPLDENLRREVVRYGEFVQAAYHSFHSNP-AMSADEAPQPRY 201
RWR+ G W G L PLD++LR ++ YGE QA Y +F+ N + A + R
Sbjct: 19 FAKRWRDLSGQNHWKGXLQPLDQDLREYIIHYGEXAQAGYDTFNINTESQFAGASIYSRK 78
Query: 202 ---------VALSDRSYKVTKSLYATSSVGLPK-WVDDVAPDLGWMTQRSSWIGYVAVCD 251
+A YKVTK +YATS + +P+ ++ GW ++ S+W GYVAV D
Sbjct: 79 DFFAKVGLEIAHPYTKYKVTKFIYATSDIHVPESFLLFPISREGW-SKESNWXGYVAVTD 137
Query: 252 DRREIQRMGRRDIVIALRGTATCLEWAENFRAQLADM-----PHDKQSKVESGFLSLYNT 306
D + +GRRDIV++ RG+ LEW E+F L + + Q ++ G+ S+Y +
Sbjct: 138 D-QGTALLGRRDIVVSWRGSVQPLEWVEDFEFGLVNAIKIFGERNDQVQIHQGWYSIYXS 196
Query: 307 RGAQVP----SLSESVLEEVRRLMELYKGETLSITVTGHSLGAALSLLVADDISTCAPSV 362
+ + P + + VL EV RL+E YK E +SIT+ GHSLGAAL+ L A DI +
Sbjct: 197 QDERSPFTKTNARDQVLREVGRLLEKYKDEEVSITICGHSLGAALATLSATDIVANGYNR 256
Query: 363 P--------PVAVFSFGGPRVGNRGFANRVKA-NNVKVLRIVNNQDLITRVPGNFIGEDV 413
P PV F F PRVG+ F +++VLR N D+I P IG
Sbjct: 257 PKSRPDKSCPVTAFVFASPRVGDSDFRKLFSGLEDIRVLRTRNLPDVIPIYPP--IG--- 311
Query: 414 ANENIKKMLNVINNEESEWAYSHVGTELRVDTKMSPYLKPNADVACCHDLEAYLHLVDGF 473
YS VG E +DT+ SPY K ++A H LE YLH V G
Sbjct: 312 --------------------YSEVGDEFPIDTRKSPYXKSPGNLATFHCLEGYLHGVAGT 351
Query: 474 MASDCP--FRANAKRSLVKLLNDQRSNVK 500
++ FR + +R+ + L+N +K
Sbjct: 352 QGTNKADLFRLDVERA-IGLVNKSVDGLK 379
>pdb|1TIC|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1TIC|B Chain B, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|1LGY|A Chain A, Lipase Ii From Rhizopus Niveus
pdb|1LGY|B Chain B, Lipase Ii From Rhizopus Niveus
pdb|1LGY|C Chain C, Lipase Ii From Rhizopus Niveus
Length = 269
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/188 (30%), Positives = 87/188 (46%), Gaps = 19/188 (10%)
Query: 225 KWVDDVAPDLGWMTQRSSWIGYVAVCDDRREIQRMGRRDIVIALRGTATCLEWAENFRAQ 284
KWV D + + S GYV D ++ I + RGT + +
Sbjct: 45 KWVPDGKIITTFTSLLSDTNGYVLRSDKQKTIY--------LVFRGTNSFRSAITDIVFN 96
Query: 285 LADMPHDKQSKVESGFLSLYNTRGAQVPSLSESVLEEVRRLMELYKGETLSITVTGHSLG 344
+D K +KV +GFLS Y QV + V++E +L T + VTGHSLG
Sbjct: 97 FSDYKPVKGAKVHAGFLSSYE----QVVNDYFPVVQE-----QLTAHPTYKVIVTGHSLG 147
Query: 345 AALSLLVADDISTCAPSVPP--VAVFSFGGPRVGNRGFANRVKANNVKVLRIVNNQDLIT 402
A +LL D+ P + P +++F+ GGPRVGN FA V++ + R V+ +D++
Sbjct: 148 GAQALLAGMDLYQREPRLSPKNLSIFTVGGPRVGNPTFAYYVESTGIPFQRTVHKRDIVP 207
Query: 403 RVPGNFIG 410
VP G
Sbjct: 208 HVPPQSFG 215
>pdb|1TGL|A Chain A, A Serine Protease Triad Forms The Catalytic Centre Of A
Triacylglycerol Lipase
Length = 269
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 261 RRDIVIALRGTATCLEWAENFRAQLADMPHDKQSKVESGFLSLYNTRGAQVPSLSESVLE 320
+ I I RG+++ W + P +KV GFL Y G L +VL+
Sbjct: 72 EKTIYIVFRGSSSIRNWIADLTFVPVSYPPVSGTKVHKGFLDSY---GEVQNELVATVLD 128
Query: 321 EVRRLMELYKGETLSITVTGHSLGAALSLLVADDISTCAPSVPPVAVFSF--GGPRVGNR 378
+ ++ YK + VTGHSLG A +LL A D+ + +F + G PRVGN
Sbjct: 129 QFKQYPS-YK-----VAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQGQPRVGNP 182
Query: 379 GFANRVKANNVKVLRIVNNQDLITRVP 405
FAN V + + R VN +D++ +P
Sbjct: 183 AFANYVVSTGIPYRRTVNERDIVPHLP 209
>pdb|4TGL|A Chain A, Catalysis At The Interface: The Anatomy Of A
Conformational Change In A Triglyceride Lipase
Length = 269
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 261 RRDIVIALRGTATCLEWAENFRAQLADMPHDKQSKVESGFLSLYNTRGAQVPSLSESVLE 320
+ I I RG+++ W + P +KV GFL Y G L +VL+
Sbjct: 72 EKTIYIVFRGSSSIRNWIADLTFVPVSYPPVSGTKVHKGFLDSY---GEVQNELVATVLD 128
Query: 321 EVRRLMELYKGETLSITVTGHSLGAALSLLVADDISTCAPSVPPVAVFSF--GGPRVGNR 378
+ ++ YK + VTGHSLG A +LL A D+ + +F + G PRVGN
Sbjct: 129 QFKQYPS-YK-----VAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQGQPRVGNP 182
Query: 379 GFANRVKANNVKVLRIVNNQDLITRVP 405
FAN V + + R VN +D++ +P
Sbjct: 183 AFANYVVSTGIPYRRTVNERDIVPHLP 209
>pdb|5TGL|A Chain A, A Model For Interfacial Activation In Lipases From The
Structure Of A Fungal Lipase-Inhibitor Complex
Length = 269
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 11/147 (7%)
Query: 261 RRDIVIALRGTATCLEWAENFRAQLADMPHDKQSKVESGFLSLYNTRGAQVPSLSESVLE 320
+ I I RG+++ W + P +KV GFL Y G L +VL+
Sbjct: 72 EKTIYIVFRGSSSIRNWIADLTFVPVSYPPVSGTKVHKGFLDSY---GEVQNELVATVLD 128
Query: 321 EVRRLMELYKGETLSITVTGHSLGAALSLLVADDISTCAPSVPPVAVFSF--GGPRVGNR 378
+ ++ YK + VTGHSLG A +LL A D+ + +F + G PRVGN
Sbjct: 129 QFKQYPS-YK-----VAVTGHSLGGATALLCALDLYQREEGLSSSNLFLYTQGQPRVGNP 182
Query: 379 GFANRVKANNVKVLRIVNNQDLITRVP 405
FAN V + + R VN +D++ +P
Sbjct: 183 AFANYVVSTGIPYRRTVNERDIVPHLP 209
>pdb|3TGL|A Chain A, Structure And Molecular Model Refinement Of Rhizomucor
Miehei Triacylglyceride Lipase: A Case Study Of The Use
Of Simulated Annealing In Partial Model Refinement
Length = 269
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 68/147 (46%), Gaps = 11/147 (7%)
Query: 261 RRDIVIALRGTATCLEWAENFRAQLADMPHDKQSKVESGFLSLYNTRGAQVPSLSESVLE 320
+ I I RG+++ W + P +KV GFL Y G L +VL+
Sbjct: 72 EKTIYIVFRGSSSIRNWIADLTFVPVSYPPVSGTKVHKGFLDSY---GEVQNELVATVLD 128
Query: 321 EVRRLMELYKGETLSITVTGHSLGAALSLLVADDISTCAPSVPPVAVFSF--GGPRVGNR 378
+ ++ YK + VTGHSLG A LL A D+ + +F + G PRVG+
Sbjct: 129 QFKQYPS-YK-----VAVTGHSLGGATVLLCALDLYQREEGLSSSNLFLYTQGQPRVGDP 182
Query: 379 GFANRVKANNVKVLRIVNNQDLITRVP 405
FAN V + + R VN +D++ +P
Sbjct: 183 AFANYVVSTGIPYRRTVNERDIVPHLP 209
>pdb|1DT3|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT3|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|E Chain E, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|F Chain F, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|G Chain G, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DT5|H Chain H, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DTE|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1DU4|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1DU4|D Chain D, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase Other Structure
Details
pdb|1EIN|A Chain A, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|B Chain B, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1EIN|C Chain C, The Structural Origins Of Interfacial Activation In
Thermomyces (Humicola) Lanuginosa Lipase
pdb|1TIB|A Chain A, Conformational Lability Of Lipases Observed In The Absence
Of An Oil-Water Interface: Crystallographic Studies Of
Enzymes From The Fungi Humicola Lanuginosa And Rhizopus
Delemar
pdb|4DYH|A Chain A, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4DYH|B Chain B, Crystal Structure Of Glycosylated Lipase From Humicola
Lanuginosa At 2 Angstrom Resolution
pdb|4EA6|A Chain A, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4EA6|B Chain B, Crystal Structure Of Fungal Lipase From
Thermomyces(Humicola) Lanuginosa At 2.30 Angstrom
Resolution.
pdb|4FLF|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4FLF|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.15a Resolution.
pdb|4GBG|A Chain A, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GBG|B Chain B, Crystal Structure Of Ethyl Acetoacetate Treated Lipase
From Thermomyces Lanuginosa At 2.9 A Resolution
pdb|4GI1|A Chain A, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GI1|B Chain B, Structure Of The Complex Of Three Phase Partition Treated
Lipase From Thermomyces Lanuginosa With
16-Hydroxypalmitic Acid At 2.4 A Resolution
pdb|4GLB|A Chain A, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GLB|B Chain B, Structure Of P-Nitrobenzaldehyde Inhibited Lipase From
Thermomyces Lanuginosa At 2.69 A Resolution
pdb|4GWL|A Chain A, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GWL|B Chain B, Structure Of Three Phase Partition Treated Lipase From
Thermomyces Lanuginosa At 2.55a Resolution
pdb|4GHW|A Chain A, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
pdb|4GHW|B Chain B, Crystal Structure Of The Complex Of Fungal Lipase From
Thermomyces Lanuginosa With Decanoic Acid At 2.6 A
Resolution
Length = 269
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 16/145 (11%)
Query: 264 IVIALRGTATCLEWAENFRAQLADMPHDKQS--KVESGFLSLYNTRGAQVPSLSESVLEE 321
IV++ RG+ + W N L ++ +D S + GF S + + +L + V +
Sbjct: 76 IVLSFRGSRSIENWIGNLNFDLKEI-NDICSGCRGHDGFTSSWRS---VADTLRQKVEDA 131
Query: 322 VRRLMELYKGETLSITVTGHSLGAALSLLVADDISTCAPSVPPVAVFSFGGPRVGNRGFA 381
VR + Y+ + TGHSLG AL+ + D+ + VFS+G PRVGNR FA
Sbjct: 132 VREHPD-YR-----VVFTGHSLGGALATVAGADLRGNGYDID---VFSYGAPRVGNRAFA 182
Query: 382 NRVKANNVKVL-RIVNNQDLITRVP 405
+ L RI + D++ R+P
Sbjct: 183 EFLTVQTGGTLYRITHTNDIVPRLP 207
>pdb|1GT6|A Chain A, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
pdb|1GT6|B Chain B, S146a Mutant Of Thermomyces (Humicola) Lanuginosa Lipase
Complex With Oleic Acid
Length = 269
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 16/145 (11%)
Query: 264 IVIALRGTATCLEWAENFRAQLADMPHDKQS--KVESGFLSLYNTRGAQVPSLSESVLEE 321
IV++ RG+ + W N L ++ +D S + GF S + + +L + V +
Sbjct: 76 IVLSFRGSRSIENWIGNLNFDLKEI-NDICSGCRGHDGFTSSWRS---VADTLRQKVEDA 131
Query: 322 VRRLMELYKGETLSITVTGHSLGAALSLLVADDISTCAPSVPPVAVFSFGGPRVGNRGFA 381
VR + Y+ + TGH+LG AL+ + D+ + VFS+G PRVGNR FA
Sbjct: 132 VREHPD-YR-----VVFTGHALGGALATVAGADLRGNGYDID---VFSYGAPRVGNRAFA 182
Query: 382 NRVKANNVKVL-RIVNNQDLITRVP 405
+ L RI + D++ R+P
Sbjct: 183 EFLTVQTGGTLYRITHTNDIVPRLP 207
>pdb|3NGM|A Chain A, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|B Chain B, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|C Chain C, Crystal Structure Of Lipase From Gibberella Zeae
pdb|3NGM|D Chain D, Crystal Structure Of Lipase From Gibberella Zeae
Length = 319
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 57/145 (39%), Gaps = 12/145 (8%)
Query: 261 RRDIVIALRGTATCLEWAENFRAQLADMPHDKQSKVESGFLSLYNTRGAQVPSLSESVLE 320
R++IV++ RG+ W N D V SGF + +N S
Sbjct: 72 RKEIVVSFRGSINIRNWLTNLDFDQDDCSLTSGCGVHSGFQNAWN---------EISAAA 122
Query: 321 EVRRLMELYKGETLSITVTGHSLGAALSLLVADDISTCAPSVPPVAVFSFGGPRVGNRGF 380
+ + GHSLG A++ L ++ P+ ++++G PRVGN
Sbjct: 123 TAAVAKARKANPSFKVVSVGHSLGGAVATLAGANLRIGGT---PLDIYTYGSPRVGNTQL 179
Query: 381 ANRVKANNVKVLRIVNNQDLITRVP 405
A V R+ N +D + R+P
Sbjct: 180 AAFVSNQAGGEFRVTNAKDPVPRLP 204
>pdb|2HL6|A Chain A, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2HL6|B Chain B, Structure Of Homologously Expressed Ferrulate Esterase Of
Aspergillus Niger In Complex With Caps
pdb|2IX9|A Chain A, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
pdb|2IX9|B Chain B, Respective Role Of Protein Folding And Glycosylation In
The Thermal Stability Of Recombinant Feruloyl Esterase A
Length = 260
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 22/154 (14%)
Query: 262 RDIVIALRGTA--TCLEWAENFRAQLAD-MPHDKQSKVESGFLSLYNTRGAQVPSLSESV 318
++I+ RGT T L+ N+ D +P +V G+ + + QV SL
Sbjct: 59 KEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCNDCEVHGGYYIGWISVQDQVESL---- 114
Query: 319 LEEVRRLMELYKGETLSITVTGHSLGAALSLLVADDISTCAPSVPPVAVFSFGGPRVGNR 378
V++ Y ++TVTGHSLGA+++ L A +S + V +++FG PR GN+
Sbjct: 115 ---VKQQASQYP--DYALTVTGHSLGASMAALTAAQLSA---TYDNVRLYTFGEPRSGNQ 166
Query: 379 GFANRV-------KANNVKVLRIVNNQDLITRVP 405
FA+ + + R+ ++ D I +P
Sbjct: 167 AFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLP 200
>pdb|1UWC|A Chain A, Feruloyl Esterase From Aspergillus Niger
pdb|1UWC|B Chain B, Feruloyl Esterase From Aspergillus Niger
pdb|1UZA|A Chain A, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
pdb|1UZA|B Chain B, Crystallographic Structure Of A Feruloyl Esterase From
Aspergillus Niger
Length = 261
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 22/154 (14%)
Query: 262 RDIVIALRGTA--TCLEWAENFRAQLAD-MPHDKQSKVESGFLSLYNTRGAQVPSLSESV 318
++I+ RGT T L+ N+ D +P +V G+ + + QV SL
Sbjct: 59 KEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCNDCEVHGGYYIGWISVQDQVESL---- 114
Query: 319 LEEVRRLMELYKGETLSITVTGHSLGAALSLLVADDISTCAPSVPPVAVFSFGGPRVGNR 378
V++ Y ++TVTGHSLGA+++ L A +S + V +++FG PR GN+
Sbjct: 115 ---VKQQASQYP--DYALTVTGHSLGASMAALTAAQLSA---TYDNVRLYTFGEPRSGNQ 166
Query: 379 GFANRV-------KANNVKVLRIVNNQDLITRVP 405
FA+ + + R+ ++ D I +P
Sbjct: 167 AFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLP 200
>pdb|1USW|A Chain A, Crystal Structure Of Ferulic Acid Esterase From
Aspergillus Niger
Length = 260
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 72/154 (46%), Gaps = 22/154 (14%)
Query: 262 RDIVIALRGTA--TCLEWAENFRAQLAD-MPHDKQSKVESGFLSLYNTRGAQVPSLSESV 318
++I+ RGT T L+ N+ D +P +V G+ + + QV SL
Sbjct: 59 KEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCNDCEVHGGYYIGWISVQDQVESL---- 114
Query: 319 LEEVRRLMELYKGETLSITVTGHSLGAALSLLVADDISTCAPSVPPVAVFSFGGPRVGNR 378
V++ Y ++TVTGHSLGA+++ L A +S + V +++FG PR GN+
Sbjct: 115 ---VKQQASQYP--DYALTVTGHSLGASMAALTAAQLSA---TYDNVRLYTFGEPRSGNQ 166
Query: 379 GFANRV-------KANNVKVLRIVNNQDLITRVP 405
FA+ + + R+ ++ D I +P
Sbjct: 167 AFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLP 200
>pdb|2BJH|A Chain A, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|B Chain B, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
pdb|2BJH|C Chain C, Crystal Structure Of S133a Anfaea-Ferulic Acid Complex
Length = 260
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 22/154 (14%)
Query: 262 RDIVIALRGTA--TCLEWAENFRAQLAD-MPHDKQSKVESGFLSLYNTRGAQVPSLSESV 318
++I+ RGT T L+ N+ D +P +V G+ + + QV SL
Sbjct: 59 KEIITVFRGTGSDTNLQLDTNYTLTPFDTLPQCNDCEVHGGYYIGWISVQDQVESL---- 114
Query: 319 LEEVRRLMELYKGETLSITVTGHSLGAALSLLVADDISTCAPSVPPVAVFSFGGPRVGNR 378
V++ Y ++TVTGH+LGA+++ L A +S + V +++FG PR GN+
Sbjct: 115 ---VKQQASQYP--DYALTVTGHALGASMAALTAAQLSA---TYDNVRLYTFGEPRSGNQ 166
Query: 379 GFANRV-------KANNVKVLRIVNNQDLITRVP 405
FA+ + + R+ ++ D I +P
Sbjct: 167 AFASYMNDAFQVSSPETTQYFRVTHSNDGIPNLP 200
>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
Length = 301
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 77/182 (42%), Gaps = 36/182 (19%)
Query: 245 GYVAVCDDRREIQRMGR-----RDIVIALRGTATCLEWAENF--RAQLADMPHDKQSKVE 297
GY+AV ++I + R D++ +R L NF A ++ V
Sbjct: 70 GYLAVDHASKQIYLVIRGTHSLEDVITDIRIMQAPLT---NFDLAANISSTATCDDCLVH 126
Query: 298 SGFLSLYNTRGAQVPSLSESVLEEVRRLMELYKGETLSITVTGHSLGAALSLLVADDIST 357
+GF+ YN Q+ +SV+E+ I VTGHSLG A +LL ++
Sbjct: 127 NGFIQSYNNTYNQIGPKLDSVIEQY---------PDYQIAVTGHSLGGAAALLFGINLKV 177
Query: 358 CAPSVPPVAVFSFGGPRVGNRGFANRVK--------------ANNVKVLRIVNNQDLITR 403
P+ V + G P VGN GFAN V + + K+ RI + D++ +
Sbjct: 178 NGHD--PLVV-TLGQPIVGNAGFANWVDKLFFGQENPDVSKVSKDRKLYRITHRGDIVPQ 234
Query: 404 VP 405
VP
Sbjct: 235 VP 236
>pdb|1TIA|A Chain A, An Unusual Buried Polar Cluster In A Family Of Fungal
Lipases
Length = 279
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 64/144 (44%), Gaps = 16/144 (11%)
Query: 264 IVIALRGTATCLEWAENFRAQLADMPHDKQSKVESGFLSLYNTRGAQVPSLSESVLEEVR 323
+V+A RG+ + W + + E GF S + + + +++E++
Sbjct: 76 VVLAFRGSYSVRNWVADATFVHTNPGLCDGCLAELGFWSSWKL-------VRDDIIKELK 128
Query: 324 RLMELYKGETLSITVTGHSLGAALSLLVADDISTCAPSVPPVAVFSFGGPRVGNRGFANR 383
++ + + V GHSLGAA++ L A D+ P ++++ PRVGN A
Sbjct: 129 EVVA--QNPNYELVVVGHSLGAAVATLAATDLR--GKGYPSAKLYAYASPRVGNAALAKY 184
Query: 384 VKA--NNVKVLRIVNNQDLITRVP 405
+ A NN R + D + ++P
Sbjct: 185 ITAQGNN---FRFTHTNDPVPKLP 205
>pdb|3UUF|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 278
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 336 ITVTGHSLGAALSLLVADDISTCAPSVPPVAVFSFGGPRVGNRGFANRVKAN-NVKVLRI 394
+TV GHSLGAA+ LL A DI + FG PR+GN FA+ V K I
Sbjct: 139 VTVIGHSLGAAMGLLCAMDIELRMDG-GLYKTYLFGLPRLGNPTFASFVDQKIGDKFHSI 197
Query: 395 VNNQDLITRVPGNFIG 410
+N +D + VP +G
Sbjct: 198 INGRDWVPTVPPRALG 213
>pdb|3UUE|A Chain A, Crystal Structure Of Mono- And Diacylglycerol Lipase From
Malassezia Globosa
Length = 279
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 336 ITVTGHSLGAALSLLVADDISTCAPSVPPVAVFSFGGPRVGNRGFANRVKAN-NVKVLRI 394
+TV GHSLGAA+ LL A DI + FG PR+GN FA+ V K I
Sbjct: 140 VTVIGHSLGAAMGLLCAMDIELRMDG-GLYKTYLFGLPRLGNPTFASFVDQKIGDKFHSI 198
Query: 395 VNNQDLITRVPGNFIG 410
+N +D + VP +G
Sbjct: 199 INGRDWVPTVPPRALG 214
>pdb|2ORY|A Chain A, Crystal Structure Of M37 Lipase
pdb|2ORY|B Chain B, Crystal Structure Of M37 Lipase
Length = 346
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 71/166 (42%), Gaps = 23/166 (13%)
Query: 256 IQRMGRR-DIVIALRGT--ATCLEWAENFRAQLADMPHDKQSKVESGFLSL-----YNTR 307
IQ+ G + VIA+RGT + +W N ++ M + VE L + Y +
Sbjct: 76 IQKKGAEGEYVIAIRGTNPVSISDWLFN-DFMVSAMKKWPYASVEGRILKISESTSYGLK 134
Query: 308 GAQ-------VPSLSESVLEEVRRLMELYKGETLSITVTGHSLGAALSLLVA---DDIST 357
Q +P ++++L+ + ++ I VTGHS G ALS +A DI
Sbjct: 135 TLQKLKPKSHIPGENKTILQFLNE--KIGPEGKAKICVTGHSKGGALSSTLALWLKDIQG 192
Query: 358 CAPSV-PPVAVFSFGGPRVGNRGFANRV-KANNVKVLRIVNNQDLI 401
S ++ F GP GN FA+ + RI N+ D++
Sbjct: 193 VKLSQNIDISTIPFAGPTAGNADFADYFDDCLGDQCTRIANSLDIV 238
>pdb|3UC9|A Chain A, Crystal Structure Of Yeast Irc6p - A Novel Type Of
Conserved Clathrin Accessory Protein
Length = 233
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 47/98 (47%), Gaps = 11/98 (11%)
Query: 176 EFVQAAYHSFHSNPAMSADEAPQPRYVALSDRSYKVTKSLYATSSVGLPKWVDD-VAPDL 234
+F+Q +H + ++ D+ + RY YKV LY S +P WV++ + P+
Sbjct: 44 QFLQDLFHCSSTGISIVKDQTWENRY-------YKVHFDLYIDSCKDIPVWVEEFITPEC 96
Query: 235 GWMTQRSSWIGYVAVCDDRR-EIQRMGRRDIVIALRGT 271
+ R+ G + + D R+ + Q + + ++ A R T
Sbjct: 97 EPL--RNVMAGIILITDIRQTKPQELLHQFMIAAHRNT 132
>pdb|3F7F|A Chain A, Structure Of Nup120
pdb|3F7F|B Chain B, Structure Of Nup120
pdb|3F7F|C Chain C, Structure Of Nup120
pdb|3F7F|D Chain D, Structure Of Nup120
Length = 729
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 276 EWAENFRAQLADM--PHD-----KQSKVESGFLSLYNTRGAQVPSLSESVLEEVRRLM 326
EW E+ L D+ HD K VE GF +L + G Q+ ++ +L E + +M
Sbjct: 377 EWIESVNKSLVDLQSEHDLDIVTKTGDVERGFCNLKSRYGTQIFERAQQILSENKIIM 434
>pdb|3H7N|A Chain A, Structure Of Nup120
pdb|3H7N|B Chain B, Structure Of Nup120
pdb|3H7N|C Chain C, Structure Of Nup120
pdb|3H7N|D Chain D, Structure Of Nup120
Length = 729
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 276 EWAENFRAQLADM--PHD-----KQSKVESGFLSLYNTRGAQVPSLSESVLEEVRRLM 326
EW E+ L D+ HD K VE GF +L + G Q+ ++ +L E + +M
Sbjct: 377 EWIESVNKSLVDLQSEHDLDIVTKTGDVERGFCNLKSRYGTQIFERAQQILSENKIIM 434
>pdb|1CII|A Chain A, Colicin Ia
Length = 602
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 102 LEGLKRFW-PEMKAAEEMSPRHLNRLQRLLSISSAEYSPRNNLGSRWREYHGCKDWAGLL 160
+EG K+ + E+ +++ R L+ ++ S SA S RNNL +R E D L
Sbjct: 337 VEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNAL 396
Query: 161 DPLDENLRREV 171
EN+R ++
Sbjct: 397 LKEKENIRNQL 407
>pdb|4EMB|A Chain A, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|B Chain B, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|C Chain C, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
pdb|4EMB|D Chain D, Crystal Structure Of A Phosphoglycerate Mutase Gpma From
Borrelia Burgdorferi B31
Length = 274
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 166 NLRREVVRYGEFVQAAYHSFHSNPAMSADEA------PQPRYVALSDRSYKVTKSLYATS 219
N +YGE + + P S DE+ PRY + R T+ L T
Sbjct: 123 NKSETAAKYGEDKVLIWRRSYDVPPXSLDESDDRHPIKDPRYKHIPKRELPSTECLKDTV 182
Query: 220 SVGLPKWVDDVAPDL 234
+ +P W D++A ++
Sbjct: 183 ARVIPYWTDEIAKEV 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,150,989
Number of Sequences: 62578
Number of extensions: 563794
Number of successful extensions: 1392
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1344
Number of HSP's gapped (non-prelim): 29
length of query: 531
length of database: 14,973,337
effective HSP length: 103
effective length of query: 428
effective length of database: 8,527,803
effective search space: 3649899684
effective search space used: 3649899684
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)