BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039428
(335 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|F6QEU4|LIN41_XENTR E3 ubiquitin-protein ligase TRIM71 OS=Xenopus tropicalis GN=trim71
PE=3 SV=1
Length = 814
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 84/216 (38%), Gaps = 27/216 (12%)
Query: 105 GIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTAD---DIAV 161
G+A D R R++VA D + T++ FL + K + + D+AV
Sbjct: 604 GVACDNSR-RIVVADKDN--------HRVQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAV 654
Query: 162 DAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVI 221
++EG V+D + ++ G +G L+ F W K+ G+ + DG+L+V
Sbjct: 655 NSEGKILVSDTRNHRVQLFGPDGTFLNKYG---FEGALW-KHFDSPRGVAFSQDGYLVVT 710
Query: 222 HMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281
+ L I + E G G+A+ +++VA + ++ E +
Sbjct: 711 DFNNHRLLIIKPDCQSAHFLGTEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQIFEPN 770
Query: 282 DGWETASVVAKFN------GPTHRVATAATVKDGRV 311
S + KF G R + A DG +
Sbjct: 771 -----GSFLCKFGTQGSGFGQMDRPSGIAVTPDGTI 801
>sp|Q1PRL4|LIN41_CHICK E3 ubiquitin-protein ligase TRIM71 OS=Gallus gallus GN=TRIM71 PE=2
SV=1
Length = 876
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 64/160 (40%), Gaps = 15/160 (9%)
Query: 158 DIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGF 217
D+AV+AEG V+D + ++ G +G L+ F W K+ G+ ++ +G
Sbjct: 713 DVAVNAEGKILVSDTRNHRVQLFGPDGVFLNKYG---FEGALW-KHFDSPRGVTFNHEGH 768
Query: 218 LIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARL 277
L+V + L I + E G G+A+ +++VA + ++
Sbjct: 769 LVVTDFNNHRLLVIHADCQSARFLGSEGSGNGQFLRPQGVAVDQEGRIIVADSRNHRVQI 828
Query: 278 VESSDGWETASVVAKFN------GPTHRVATAATVKDGRV 311
ES+ S + KF G R + A DG +
Sbjct: 829 FESN-----GSFLCKFGAQGSGFGQMDRPSGIAVTPDGMI 863
>sp|Q5GTR3|PNP_WOLTR Polyribonucleotide nucleotidyltransferase OS=Wolbachia sp. subsp.
Brugia malayi (strain TRS) GN=pnp PE=3 SV=1
Length = 755
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 76 LVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDL 135
L DE S V E K + E++++ G +P +L+ F D +GNK+ + A D+
Sbjct: 179 LSGDERSILMVESEAKELPEENILNAIKFGHEHLQPVIKLIKEFADTIGNKFDSFAPIDI 238
Query: 136 S 136
S
Sbjct: 239 S 239
>sp|E1BJS7|LIN41_BOVIN E3 ubiquitin-protein ligase TRIM71 OS=Bos taurus GN=TRIM71 PE=3
SV=2
Length = 868
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 85/216 (39%), Gaps = 27/216 (12%)
Query: 105 GIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTAD---DIAV 161
G+A D R R++VA D + T++ FL + K + + D+AV
Sbjct: 658 GVACDASR-RIVVADKDN--------HRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAV 708
Query: 162 DAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVI 221
++EG V+D + +I G +G L+ F W K+ G+ ++ +G L+V
Sbjct: 709 NSEGKILVSDTRNHRIQLFGPDGVFLNKYG---FEGALW-KHFDSPRGVAFNHEGHLVVT 764
Query: 222 HMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281
+ L I + E G G+A+ +++VA + ++ ES+
Sbjct: 765 DFNNHRLLVIHPDCQSARFLGSEGTGNGQFLRPQGVAVDQEGRIIVADSRNHRVQMFESN 824
Query: 282 DGWETASVVAKFN------GPTHRVATAATVKDGRV 311
S + KF G R + A DG +
Sbjct: 825 -----GSFLCKFGAQGSGFGQMDRPSGIAVTPDGMI 855
>sp|B3CM21|PNP_WOLPP Polyribonucleotide nucleotidyltransferase OS=Wolbachia pipientis
subsp. Culex pipiens (strain wPip) GN=pnp PE=3 SV=1
Length = 758
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 65/252 (25%), Positives = 103/252 (40%), Gaps = 43/252 (17%)
Query: 76 LVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDL 135
L DE S V EVK + E++V+ G +P +L+ F D +GNK + A D+
Sbjct: 179 LSGDENSILMVESEVKELSEENVLNAIKFGHEHLQPVIKLIKEFADTVGNKPESFAPVDI 238
Query: 136 STWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLF 195
S +TQ K + D E AY V ++ Q L ++R+ +
Sbjct: 239 SD-----ITQELEKYRK---------DFE-EAYSKTVKQERV-------QALEVVRNNIL 276
Query: 196 -TAKEWYKNVFGLNGIVYHPDGF--LIVIHMCSGNLFKIDIRKEEEEVKLIELRG----- 247
T KE K+ I Y F +V M +ID RK +E++ IE+
Sbjct: 277 NTLKEAGKDE---KLITYAVKSFERSLVREMIRRKSVRIDSRK-YDEIRQIEIEADILPK 332
Query: 248 --GSSL-SLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAA 304
GS+L + G AL +V A ++V+ +G + +N P V A+
Sbjct: 333 THGSALFTRGSTQAL-----VVTALGTTQDEQIVDDIEGDRREHFMLHYNFPPFAVGEAS 387
Query: 305 TVK-DGRVYLSH 315
++ GR + H
Sbjct: 388 AIRAPGRREIGH 399
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,219,329
Number of Sequences: 539616
Number of extensions: 5219402
Number of successful extensions: 12911
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 12908
Number of HSP's gapped (non-prelim): 8
length of query: 335
length of database: 191,569,459
effective HSP length: 118
effective length of query: 217
effective length of database: 127,894,771
effective search space: 27753165307
effective search space used: 27753165307
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)