Query 039428
Match_columns 335
No_of_seqs 214 out of 1969
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 09:35:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08450 SGL: SMP-30/Gluconola 100.0 7.5E-28 1.6E-32 214.7 28.5 227 50-315 1-244 (246)
2 COG3386 Gluconolactonase [Carb 99.9 1.3E-24 2.8E-29 197.6 28.7 254 41-335 17-293 (307)
3 PLN02919 haloacid dehalogenase 99.9 1.2E-19 2.5E-24 190.1 32.8 256 47-317 566-878 (1057)
4 PLN02919 haloacid dehalogenase 99.8 1.8E-18 3.9E-23 181.3 28.6 251 19-283 568-890 (1057)
5 COG4257 Vgb Streptogramin lyas 99.8 2.4E-17 5.2E-22 142.4 21.9 232 47-317 60-295 (353)
6 KOG1520 Predicted alkaloid syn 99.8 1.1E-16 2.4E-21 145.4 23.5 198 48-269 53-282 (376)
7 PF08450 SGL: SMP-30/Gluconola 99.7 4.3E-16 9.3E-21 138.8 21.7 190 51-270 42-245 (246)
8 PF10282 Lactonase: Lactonase, 99.7 3.5E-14 7.6E-19 132.8 30.0 241 47-306 85-345 (345)
9 COG4257 Vgb Streptogramin lyas 99.7 2.1E-14 4.6E-19 124.3 22.9 232 46-315 101-335 (353)
10 KOG4499 Ca2+-binding protein R 99.6 1.1E-13 2.3E-18 117.5 21.0 237 49-316 15-274 (310)
11 PRK11028 6-phosphogluconolacto 99.6 2.9E-13 6.2E-18 125.8 26.2 235 50-306 81-327 (330)
12 PRK11028 6-phosphogluconolacto 99.6 7.9E-13 1.7E-17 122.9 28.9 245 49-317 35-294 (330)
13 TIGR02604 Piru_Ver_Nterm putat 99.6 1.8E-12 3.9E-17 122.3 27.8 250 48-322 13-345 (367)
14 PF10282 Lactonase: Lactonase, 99.6 8.8E-13 1.9E-17 123.4 25.5 252 47-319 35-314 (345)
15 COG3391 Uncharacterized conser 99.5 1.3E-11 2.8E-16 117.0 27.1 206 49-283 74-285 (381)
16 COG2706 3-carboxymuconate cycl 99.5 1.9E-10 4E-15 103.4 29.4 234 36-282 72-322 (346)
17 COG3391 Uncharacterized conser 99.5 4.4E-11 9.6E-16 113.3 27.1 228 49-314 31-270 (381)
18 PF03022 MRJP: Major royal jel 99.4 2.5E-11 5.5E-16 110.2 20.5 208 102-317 2-256 (287)
19 COG3386 Gluconolactonase [Carb 99.4 7.1E-11 1.5E-15 107.8 22.7 199 47-270 65-275 (307)
20 TIGR02658 TTQ_MADH_Hv methylam 99.4 6.2E-10 1.3E-14 103.1 28.6 260 30-317 27-320 (352)
21 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 9.9E-10 2.2E-14 99.4 28.7 220 50-306 74-298 (300)
22 TIGR03866 PQQ_ABC_repeats PQQ- 99.4 4.1E-09 8.9E-14 95.3 30.6 227 50-315 32-267 (300)
23 PF07995 GSDH: Glucose / Sorbo 99.3 4.4E-09 9.4E-14 97.8 26.1 253 50-316 3-324 (331)
24 COG2706 3-carboxymuconate cycl 99.3 1.8E-08 3.9E-13 90.8 28.6 247 49-316 40-310 (346)
25 TIGR02604 Piru_Ver_Nterm putat 99.2 1E-09 2.2E-14 103.6 20.0 162 92-271 7-203 (367)
26 PF02239 Cytochrom_D1: Cytochr 99.2 4.5E-08 9.7E-13 92.3 26.9 262 26-320 12-339 (369)
27 KOG4659 Uncharacterized conser 99.1 4.5E-08 9.8E-13 99.9 27.1 244 49-316 365-680 (1899)
28 TIGR02658 TTQ_MADH_Hv methylam 99.1 8E-08 1.7E-12 89.2 26.9 205 49-283 105-332 (352)
29 PF06977 SdiA-regulated: SdiA- 99.1 9.7E-08 2.1E-12 84.5 24.4 208 43-270 16-240 (248)
30 PF06977 SdiA-regulated: SdiA- 99.1 1.7E-08 3.7E-13 89.4 19.5 200 102-315 23-239 (248)
31 PF03088 Str_synth: Strictosid 99.1 4.7E-10 1E-14 82.8 8.0 70 157-236 1-89 (89)
32 PF02239 Cytochrom_D1: Cytochr 99.1 3.4E-08 7.3E-13 93.1 21.8 194 60-283 5-204 (369)
33 KOG1214 Nidogen and related ba 99.0 1.3E-08 2.9E-13 99.7 17.3 197 48-280 1024-1225(1289)
34 COG3204 Uncharacterized protei 99.0 6.5E-07 1.4E-11 79.2 23.6 201 51-270 88-302 (316)
35 PF05096 Glu_cyclase_2: Glutam 99.0 5.4E-07 1.2E-11 79.5 23.1 194 45-269 41-249 (264)
36 PF03022 MRJP: Major royal jel 98.9 3E-07 6.4E-12 83.7 21.6 204 51-270 3-254 (287)
37 KOG4659 Uncharacterized conser 98.9 1.1E-07 2.3E-12 97.2 19.2 239 20-271 366-681 (1899)
38 KOG1214 Nidogen and related ba 98.9 8.4E-08 1.8E-12 94.2 17.6 226 59-320 989-1219(1289)
39 KOG1520 Predicted alkaloid syn 98.9 9.6E-08 2.1E-12 87.5 16.3 147 154-315 115-282 (376)
40 TIGR03606 non_repeat_PQQ dehyd 98.8 2.9E-06 6.2E-11 81.3 22.3 177 47-234 28-262 (454)
41 cd00200 WD40 WD40 domain, foun 98.7 3.2E-05 7E-10 67.9 27.4 196 50-282 11-208 (289)
42 cd00200 WD40 WD40 domain, foun 98.7 6.4E-05 1.4E-09 66.0 29.1 194 52-282 55-250 (289)
43 TIGR03118 PEPCTERM_chp_1 conse 98.7 4.3E-05 9.4E-10 68.3 25.2 218 47-283 21-281 (336)
44 TIGR03606 non_repeat_PQQ dehyd 98.6 2.7E-06 5.8E-11 81.5 17.5 163 102-280 31-261 (454)
45 PRK02888 nitrous-oxide reducta 98.6 1.2E-05 2.6E-10 78.9 21.6 200 59-280 140-403 (635)
46 PF05096 Glu_cyclase_2: Glutam 98.6 4.6E-06 1E-10 73.7 17.0 166 48-234 89-261 (264)
47 PRK05137 tolB translocation pr 98.6 9.5E-05 2.1E-09 71.5 27.0 195 50-281 203-412 (435)
48 PF07995 GSDH: Glucose / Sorbo 98.5 1.2E-06 2.7E-11 81.4 12.9 110 154-268 2-130 (331)
49 KOG0279 G protein beta subunit 98.5 0.00014 3.1E-09 63.8 24.4 233 45-313 60-300 (315)
50 KOG0291 WD40-repeat-containing 98.5 2.3E-05 5E-10 76.9 21.7 197 51-284 353-553 (893)
51 COG2133 Glucose/sorbosone dehy 98.5 0.00033 7.2E-09 65.9 26.7 254 49-320 67-389 (399)
52 COG3204 Uncharacterized protei 98.5 0.00012 2.6E-09 65.1 22.1 202 102-314 87-300 (316)
53 KOG4499 Ca2+-binding protein R 98.4 9E-06 1.9E-10 69.8 14.3 154 100-270 108-274 (310)
54 PRK04792 tolB translocation pr 98.4 0.00021 4.6E-09 69.4 25.5 180 52-268 221-410 (448)
55 KOG1446 Histone H3 (Lys4) meth 98.4 0.00079 1.7E-08 60.1 26.4 205 48-283 14-219 (311)
56 PRK04922 tolB translocation pr 98.4 0.00028 6E-09 68.2 25.7 193 51-280 206-410 (433)
57 PRK03629 tolB translocation pr 98.4 0.00031 6.8E-09 67.8 25.8 182 50-268 200-390 (429)
58 PRK04043 tolB translocation pr 98.4 0.00043 9.4E-09 66.5 26.4 192 51-281 190-400 (419)
59 KOG0291 WD40-repeat-containing 98.4 0.00028 6E-09 69.6 24.4 195 51-280 310-507 (893)
60 PF03088 Str_synth: Strictosid 98.3 3.4E-06 7.4E-11 62.3 8.4 75 104-184 1-88 (89)
61 PRK02889 tolB translocation pr 98.3 0.0006 1.3E-08 65.8 26.2 180 52-268 199-388 (427)
62 TIGR03300 assembly_YfgL outer 98.3 0.0011 2.4E-08 62.7 27.3 194 52-283 59-261 (377)
63 PF07433 DUF1513: Protein of u 98.3 0.00031 6.7E-09 63.6 22.0 198 53-275 55-279 (305)
64 PRK02888 nitrous-oxide reducta 98.3 3.6E-05 7.8E-10 75.6 17.2 195 56-270 200-450 (635)
65 KOG0315 G-protein beta subunit 98.3 0.00068 1.5E-08 58.8 22.7 211 42-282 77-289 (311)
66 PRK00178 tolB translocation pr 98.3 0.00094 2E-08 64.4 26.9 193 51-280 201-405 (430)
67 PRK11138 outer membrane biogen 98.3 0.00031 6.8E-09 66.9 22.6 217 61-317 161-385 (394)
68 PRK01742 tolB translocation pr 98.3 0.00059 1.3E-08 65.9 24.3 176 51-268 206-388 (429)
69 PTZ00420 coronin; Provisional 98.2 0.0019 4.1E-08 64.1 27.8 216 44-283 70-295 (568)
70 PTZ00421 coronin; Provisional 98.2 0.0024 5.2E-08 62.6 28.1 209 50-283 77-292 (493)
71 KOG1446 Histone H3 (Lys4) meth 98.2 0.0038 8.2E-08 55.8 26.0 207 46-285 54-266 (311)
72 TIGR02800 propeller_TolB tol-p 98.2 0.0014 3E-08 62.7 25.7 181 51-268 192-382 (417)
73 PF01436 NHL: NHL repeat; Int 98.2 1.9E-06 4.1E-11 49.3 3.3 28 153-180 1-28 (28)
74 PF13449 Phytase-like: Esteras 98.2 0.00036 7.7E-09 64.9 20.2 168 102-270 21-233 (326)
75 TIGR03300 assembly_YfgL outer 98.2 0.0021 4.5E-08 60.8 25.8 194 53-283 100-299 (377)
76 PRK03629 tolB translocation pr 98.2 0.0017 3.7E-08 62.7 25.5 156 103-283 201-365 (429)
77 PRK05137 tolB translocation pr 98.2 0.0016 3.4E-08 63.0 25.1 187 60-282 166-367 (435)
78 PRK04792 tolB translocation pr 98.1 0.0021 4.5E-08 62.5 24.9 155 104-283 221-384 (448)
79 KOG0266 WD40 repeat-containing 98.1 0.0016 3.5E-08 63.3 24.2 207 46-282 201-410 (456)
80 COG3823 Glutamine cyclotransfe 98.1 0.00059 1.3E-08 57.8 17.6 191 46-270 43-248 (262)
81 PF13360 PQQ_2: PQQ-like domai 98.1 0.0048 1.1E-07 53.9 24.7 195 55-283 32-232 (238)
82 PRK01029 tolB translocation pr 98.1 0.0041 8.9E-08 60.0 26.0 197 52-283 188-405 (428)
83 PRK11138 outer membrane biogen 98.1 0.0036 7.8E-08 59.7 24.9 187 62-283 122-314 (394)
84 PRK02889 tolB translocation pr 98.1 0.0028 6E-08 61.2 24.2 188 60-283 164-362 (427)
85 PF01436 NHL: NHL repeat; Int 98.0 1E-05 2.2E-10 46.2 4.3 27 205-231 2-28 (28)
86 KOG0289 mRNA splicing factor [ 98.0 0.0044 9.4E-08 57.8 23.3 226 50-313 263-491 (506)
87 KOG0318 WD40 repeat stress pro 98.0 0.0061 1.3E-07 58.1 24.4 216 49-307 191-414 (603)
88 PF07433 DUF1513: Protein of u 98.0 0.00055 1.2E-08 62.0 17.1 152 102-269 6-180 (305)
89 PRK04922 tolB translocation pr 98.0 0.0031 6.7E-08 61.0 23.7 156 103-283 206-370 (433)
90 TIGR03032 conserved hypothetic 98.0 0.0037 8.1E-08 56.5 22.1 191 101-314 49-258 (335)
91 KOG0318 WD40 repeat stress pro 98.0 0.0032 6.9E-08 59.9 22.4 192 50-281 322-517 (603)
92 KOG0772 Uncharacterized conser 98.0 0.0005 1.1E-08 65.1 16.7 224 37-281 156-394 (641)
93 KOG0266 WD40 repeat-containing 98.0 0.0043 9.3E-08 60.4 23.7 201 52-283 163-366 (456)
94 KOG0286 G-protein beta subunit 98.0 0.012 2.6E-07 52.3 25.7 220 50-307 99-324 (343)
95 KOG0272 U4/U6 small nuclear ri 97.9 0.00056 1.2E-08 63.3 15.9 195 52-281 179-375 (459)
96 PF06433 Me-amine-dh_H: Methyl 97.9 0.0064 1.4E-07 55.9 22.6 214 40-283 81-322 (342)
97 TIGR02800 propeller_TolB tol-p 97.9 0.0082 1.8E-07 57.4 25.0 188 60-283 156-356 (417)
98 PF06433 Me-amine-dh_H: Methyl 97.9 0.001 2.3E-08 61.0 17.5 151 112-283 2-167 (342)
99 KOG0286 G-protein beta subunit 97.9 0.015 3.3E-07 51.7 25.7 232 43-313 50-289 (343)
100 KOG0315 G-protein beta subunit 97.9 0.002 4.3E-08 56.0 17.6 185 61-280 10-196 (311)
101 KOG0278 Serine/threonine kinas 97.9 0.0014 3E-08 57.0 16.2 191 50-279 102-295 (334)
102 KOG0279 G protein beta subunit 97.9 0.0069 1.5E-07 53.5 20.5 201 48-279 105-311 (315)
103 PRK01742 tolB translocation pr 97.8 0.0088 1.9E-07 57.7 23.6 151 103-283 206-363 (429)
104 PRK00178 tolB translocation pr 97.8 0.0056 1.2E-07 59.0 22.3 160 52-244 246-414 (430)
105 KOG1407 WD40 repeat protein [F 97.8 0.0083 1.8E-07 52.6 20.4 185 50-270 22-208 (313)
106 TIGR03032 conserved hypothetic 97.8 0.0055 1.2E-07 55.5 19.9 146 50-223 104-260 (335)
107 KOG0643 Translation initiation 97.8 0.013 2.9E-07 51.5 21.5 209 52-293 14-228 (327)
108 PF05787 DUF839: Bacterial pro 97.8 0.0016 3.4E-08 64.2 17.8 74 152-225 348-456 (524)
109 KOG0278 Serine/threonine kinas 97.8 0.0035 7.5E-08 54.6 17.4 151 52-234 147-297 (334)
110 KOG0282 mRNA splicing factor [ 97.8 0.00084 1.8E-08 63.1 14.6 204 42-280 208-414 (503)
111 KOG2055 WD40 repeat protein [G 97.7 0.0066 1.4E-07 57.0 19.3 197 51-279 216-415 (514)
112 TIGR03118 PEPCTERM_chp_1 conse 97.7 0.02 4.3E-07 51.6 21.6 120 103-236 140-281 (336)
113 KOG0272 U4/U6 small nuclear ri 97.7 0.0067 1.4E-07 56.3 19.1 231 45-317 214-450 (459)
114 cd00216 PQQ_DH Dehydrogenases 97.7 0.051 1.1E-06 53.4 26.9 191 105-320 221-460 (488)
115 PRK04043 tolB translocation pr 97.7 0.023 4.9E-07 54.7 23.7 158 53-245 237-409 (419)
116 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.7 0.071 1.5E-06 52.9 28.5 83 104-186 237-337 (527)
117 PF13360 PQQ_2: PQQ-like domai 97.7 0.0098 2.1E-07 52.0 19.3 151 61-237 77-233 (238)
118 PF02333 Phytase: Phytase; In 97.7 0.055 1.2E-06 50.8 25.1 199 58-281 66-290 (381)
119 PLN00181 protein SPA1-RELATED; 97.6 0.021 4.5E-07 59.6 24.3 194 52-281 536-738 (793)
120 KOG2055 WD40 repeat protein [G 97.6 0.0064 1.4E-07 57.1 17.1 231 52-315 261-501 (514)
121 PF05787 DUF839: Bacterial pro 97.6 0.0016 3.5E-08 64.1 14.1 118 101-221 350-519 (524)
122 PF05694 SBP56: 56kDa selenium 97.6 0.046 1E-06 51.8 22.7 209 59-282 86-343 (461)
123 PLN00181 protein SPA1-RELATED; 97.6 0.078 1.7E-06 55.4 27.0 197 50-279 577-791 (793)
124 KOG0282 mRNA splicing factor [ 97.6 0.0018 3.8E-08 61.0 13.0 196 52-279 262-460 (503)
125 KOG0292 Vesicle coat complex C 97.5 0.024 5.1E-07 57.5 21.4 212 49-281 10-280 (1202)
126 COG2133 Glucose/sorbosone dehy 97.5 0.037 7.9E-07 52.3 21.9 173 101-278 177-394 (399)
127 COG3823 Glutamine cyclotransfe 97.5 0.0031 6.8E-08 53.5 12.9 162 48-231 90-256 (262)
128 COG3211 PhoX Predicted phospha 97.5 0.01 2.2E-07 57.5 18.0 65 251-316 499-573 (616)
129 KOG0263 Transcription initiati 97.4 0.01 2.2E-07 59.0 17.3 193 52-280 455-648 (707)
130 KOG0289 mRNA splicing factor [ 97.4 0.055 1.2E-06 50.7 20.5 189 52-270 307-495 (506)
131 PF13449 Phytase-like: Esteras 97.4 0.021 4.5E-07 53.1 18.2 114 153-268 19-164 (326)
132 KOG0772 Uncharacterized conser 97.4 0.0065 1.4E-07 57.8 14.5 203 48-270 214-428 (641)
133 COG3490 Uncharacterized protei 97.4 0.033 7.1E-07 49.7 17.8 153 102-270 69-244 (366)
134 COG4946 Uncharacterized protei 97.4 0.028 6.2E-07 53.2 18.4 120 129-269 383-507 (668)
135 KOG0265 U5 snRNP-specific prot 97.4 0.036 7.7E-07 49.6 18.1 196 50-281 49-246 (338)
136 PTZ00421 coronin; Provisional 97.4 0.16 3.6E-06 49.9 24.9 180 50-262 127-314 (493)
137 PF02333 Phytase: Phytase; In 97.3 0.062 1.4E-06 50.5 20.6 145 102-261 157-320 (381)
138 cd00216 PQQ_DH Dehydrogenases 97.3 0.07 1.5E-06 52.4 22.1 128 128-270 311-456 (488)
139 KOG1273 WD40 repeat protein [G 97.3 0.12 2.6E-06 46.7 23.1 157 52-234 69-226 (405)
140 KOG0296 Angio-associated migra 97.3 0.14 3.1E-06 47.0 24.3 208 51-280 151-397 (399)
141 KOG0643 Translation initiation 97.3 0.12 2.6E-06 45.7 21.4 197 50-277 54-257 (327)
142 KOG2096 WD40 repeat protein [G 97.2 0.13 2.8E-06 46.5 20.1 212 50-283 134-362 (420)
143 PLN02153 epithiospecifier prot 97.2 0.19 4.1E-06 46.8 23.9 166 112-286 85-290 (341)
144 PTZ00420 coronin; Provisional 97.2 0.21 4.5E-06 49.9 23.5 180 50-263 127-318 (568)
145 KOG0271 Notchless-like WD40 re 97.1 0.12 2.5E-06 47.9 19.3 203 46-283 155-399 (480)
146 KOG0263 Transcription initiati 97.1 0.047 1E-06 54.4 17.9 233 51-315 381-637 (707)
147 KOG1539 WD repeat protein [Gen 97.1 0.057 1.2E-06 54.4 18.4 196 49-278 449-645 (910)
148 PHA02713 hypothetical protein; 97.1 0.24 5.1E-06 49.6 23.2 181 59-270 303-520 (557)
149 KOG0283 WD40 repeat-containing 97.1 0.081 1.8E-06 53.1 19.0 200 53-280 374-575 (712)
150 KOG0271 Notchless-like WD40 re 97.0 0.043 9.2E-07 50.7 15.6 190 45-270 244-470 (480)
151 PF08662 eIF2A: Eukaryotic tra 97.0 0.16 3.5E-06 43.4 18.7 137 53-222 10-162 (194)
152 KOG0645 WD40 repeat protein [G 97.0 0.23 4.9E-06 44.0 23.0 202 50-279 16-223 (312)
153 COG3490 Uncharacterized protei 97.0 0.13 2.8E-06 46.0 17.5 115 138-270 58-180 (366)
154 KOG0299 U3 snoRNP-associated p 96.9 0.18 3.9E-06 47.6 19.2 225 53-314 207-443 (479)
155 PRK01029 tolB translocation pr 96.9 0.42 9E-06 46.2 26.6 136 128-283 211-361 (428)
156 KOG0275 Conserved WD40 repeat- 96.9 0.036 7.9E-07 50.0 13.5 197 52-280 267-466 (508)
157 KOG2110 Uncharacterized conser 96.9 0.06 1.3E-06 49.4 14.9 151 103-280 90-247 (391)
158 PF01731 Arylesterase: Arylest 96.8 0.012 2.6E-07 43.2 8.6 31 204-234 53-84 (86)
159 PHA02713 hypothetical protein; 96.8 0.56 1.2E-05 47.0 23.3 185 104-314 297-518 (557)
160 KOG0296 Angio-associated migra 96.8 0.39 8.6E-06 44.2 22.4 155 52-237 68-223 (399)
161 COG3292 Predicted periplasmic 96.8 0.058 1.2E-06 52.4 15.3 149 52-235 168-318 (671)
162 KOG0293 WD40 repeat-containing 96.8 0.065 1.4E-06 49.9 15.0 198 48-279 312-511 (519)
163 KOG0313 Microtubule binding pr 96.8 0.27 5.8E-06 45.5 18.8 202 50-279 195-416 (423)
164 KOG0275 Conserved WD40 repeat- 96.8 0.022 4.7E-07 51.4 11.5 167 46-236 211-380 (508)
165 COG3211 PhoX Predicted phospha 96.8 0.017 3.6E-07 56.1 11.6 117 101-223 417-573 (616)
166 KOG0285 Pleiotropic regulator 96.8 0.25 5.5E-06 45.4 18.2 116 50-187 153-269 (460)
167 KOG0310 Conserved WD40 repeat- 96.8 0.36 7.9E-06 45.9 19.8 223 51-313 71-296 (487)
168 KOG0645 WD40 repeat protein [G 96.8 0.36 7.7E-06 42.8 22.6 173 102-291 16-192 (312)
169 PRK13684 Ycf48-like protein; P 96.7 0.52 1.1E-05 44.0 28.2 189 48-270 45-233 (334)
170 KOG2110 Uncharacterized conser 96.7 0.34 7.3E-06 44.7 18.3 161 49-235 85-249 (391)
171 TIGR02276 beta_rpt_yvtn 40-res 96.7 0.011 2.4E-07 36.7 6.5 41 214-260 1-42 (42)
172 COG1520 FOG: WD40-like repeat 96.6 0.31 6.8E-06 46.0 19.2 153 108-283 65-219 (370)
173 KOG0646 WD40 repeat protein [G 96.6 0.22 4.7E-06 47.1 17.2 165 52-236 127-309 (476)
174 KOG1539 WD repeat protein [Gen 96.5 0.59 1.3E-05 47.4 20.5 159 102-283 450-608 (910)
175 KOG2048 WD40 repeat protein [G 96.5 0.6 1.3E-05 46.2 20.2 192 49-270 70-265 (691)
176 COG3292 Predicted periplasmic 96.5 0.036 7.8E-07 53.8 11.6 142 103-270 167-308 (671)
177 PHA03098 kelch-like protein; P 96.5 0.75 1.6E-05 45.7 21.7 197 59-286 294-517 (534)
178 KOG2106 Uncharacterized conser 96.5 0.57 1.2E-05 45.0 19.2 178 50-271 331-511 (626)
179 COG0823 TolB Periplasmic compo 96.5 0.56 1.2E-05 45.2 19.9 159 48-236 192-360 (425)
180 KOG0293 WD40 repeat-containing 96.4 0.22 4.7E-06 46.6 15.6 196 51-281 227-425 (519)
181 PF08662 eIF2A: Eukaryotic tra 96.4 0.17 3.7E-06 43.2 14.2 118 129-270 40-162 (194)
182 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.4 1.2 2.7E-05 44.2 24.4 111 61-188 70-195 (527)
183 KOG1273 WD40 repeat protein [G 96.3 0.83 1.8E-05 41.5 19.0 196 51-280 26-225 (405)
184 smart00135 LY Low-density lipo 96.3 0.013 2.8E-07 36.4 5.1 33 204-236 8-41 (43)
185 KOG4441 Proteins containing BT 96.3 0.63 1.4E-05 46.7 19.5 187 52-270 326-530 (571)
186 KOG2919 Guanine nucleotide-bin 96.2 0.23 4.9E-06 45.1 14.3 198 57-282 120-328 (406)
187 PF05694 SBP56: 56kDa selenium 96.2 1.2 2.6E-05 42.5 19.7 209 49-270 130-393 (461)
188 KOG1274 WD40 repeat protein [G 96.1 1.9 4.2E-05 44.3 22.1 199 51-286 16-222 (933)
189 KOG0284 Polyadenylation factor 96.1 0.07 1.5E-06 49.6 10.9 186 50-270 182-369 (464)
190 KOG1036 Mitotic spindle checkp 96.1 0.42 9.1E-06 43.0 15.1 188 52-268 98-292 (323)
191 KOG0284 Polyadenylation factor 96.1 0.096 2.1E-06 48.7 11.4 194 52-281 100-294 (464)
192 PF00058 Ldl_recept_b: Low-den 96.0 0.033 7.2E-07 34.9 5.8 41 216-261 1-42 (42)
193 KOG0639 Transducin-like enhanc 96.0 0.12 2.6E-06 49.4 11.9 189 50-278 511-701 (705)
194 KOG0285 Pleiotropic regulator 96.0 1.1 2.4E-05 41.3 17.6 198 50-281 237-439 (460)
195 KOG0319 WD40-repeat-containing 96.0 0.28 6E-06 49.0 14.7 182 54-268 25-209 (775)
196 smart00135 LY Low-density lipo 95.8 0.019 4.1E-07 35.6 4.3 33 153-185 8-41 (43)
197 PF14269 Arylsulfotran_2: Aryl 95.8 0.75 1.6E-05 42.2 16.4 131 50-188 145-294 (299)
198 KOG0316 Conserved WD40 repeat- 95.8 1.2 2.5E-05 39.0 17.3 193 50-282 19-214 (307)
199 KOG2048 WD40 repeat protein [G 95.8 2.3 5E-05 42.3 23.4 202 52-282 29-234 (691)
200 KOG0639 Transducin-like enhanc 95.7 0.65 1.4E-05 44.6 15.6 198 48-283 465-665 (705)
201 KOG0310 Conserved WD40 repeat- 95.7 2.1 4.5E-05 41.0 20.6 181 51-268 113-296 (487)
202 KOG2096 WD40 repeat protein [G 95.7 1.5 3.3E-05 39.9 17.0 206 51-280 89-307 (420)
203 PHA02790 Kelch-like protein; P 95.7 2 4.4E-05 42.1 19.9 177 112-315 271-453 (480)
204 KOG1274 WD40 repeat protein [G 95.7 0.73 1.6E-05 47.2 16.6 160 52-235 100-263 (933)
205 KOG4378 Nuclear protein COP1 [ 95.7 0.49 1.1E-05 45.4 14.5 184 51-270 82-269 (673)
206 KOG0303 Actin-binding protein 95.6 2 4.3E-05 40.2 19.1 200 52-283 85-296 (472)
207 KOG4441 Proteins containing BT 95.6 3 6.4E-05 41.9 22.5 224 57-316 282-530 (571)
208 KOG1407 WD40 repeat protein [F 95.6 1.6 3.4E-05 38.7 18.9 195 50-283 66-263 (313)
209 PHA02790 Kelch-like protein; P 95.5 2.8 6.1E-05 41.1 21.8 175 59-270 271-454 (480)
210 PF00058 Ldl_recept_b: Low-den 95.5 0.039 8.5E-07 34.6 4.7 40 165-214 1-42 (42)
211 KOG0265 U5 snRNP-specific prot 95.5 0.45 9.8E-06 42.8 12.8 155 52-236 94-248 (338)
212 KOG0646 WD40 repeat protein [G 95.4 2 4.2E-05 40.9 17.4 198 52-280 85-306 (476)
213 KOG0640 mRNA cleavage stimulat 95.4 0.31 6.6E-06 44.1 11.7 115 52-182 176-290 (430)
214 KOG0316 Conserved WD40 repeat- 95.4 1.7 3.7E-05 38.0 17.5 154 51-237 62-216 (307)
215 PF01731 Arylesterase: Arylest 95.3 0.06 1.3E-06 39.5 6.0 48 128-183 36-84 (86)
216 KOG0306 WD40-repeat-containing 95.3 3 6.5E-05 42.2 19.1 206 39-279 364-578 (888)
217 COG4946 Uncharacterized protei 95.3 2.9 6.4E-05 40.1 19.5 137 129-283 288-433 (668)
218 KOG0268 Sof1-like rRNA process 95.3 0.32 6.9E-06 44.8 11.4 153 103-283 150-304 (433)
219 KOG4378 Nuclear protein COP1 [ 95.3 0.24 5.2E-06 47.4 11.0 113 54-186 170-283 (673)
220 KOG2139 WD40 repeat protein [G 95.1 2.7 5.9E-05 38.9 20.6 167 49-236 196-385 (445)
221 PF14269 Arylsulfotran_2: Aryl 95.0 1.3 2.8E-05 40.6 15.1 125 103-236 146-291 (299)
222 COG1520 FOG: WD40-like repeat 95.0 3.3 7.2E-05 39.0 21.6 152 56-236 65-219 (370)
223 KOG0273 Beta-transducin family 94.9 1.2 2.6E-05 42.4 14.5 169 38-233 349-522 (524)
224 PRK14131 N-acetylneuraminic ac 94.8 3.6 7.9E-05 38.9 24.8 100 59-172 38-147 (376)
225 smart00284 OLF Olfactomedin-li 94.8 2.8 6E-05 37.4 18.0 149 104-270 77-243 (255)
226 KOG0641 WD40 repeat protein [G 94.8 2.4 5.3E-05 36.7 21.4 206 51-282 92-304 (350)
227 KOG2139 WD40 repeat protein [G 94.8 1.7 3.6E-05 40.3 14.8 147 102-268 197-362 (445)
228 KOG0264 Nucleosome remodeling 94.8 1.1 2.3E-05 42.3 13.9 175 42-235 171-348 (422)
229 TIGR02276 beta_rpt_yvtn 40-res 94.8 0.2 4.3E-06 30.8 6.5 41 111-162 2-42 (42)
230 KOG2106 Uncharacterized conser 94.8 4.3 9.3E-05 39.3 22.5 150 112-292 339-488 (626)
231 KOG0294 WD40 repeat-containing 94.7 3.4 7.3E-05 37.6 16.1 150 102-281 45-197 (362)
232 KOG0273 Beta-transducin family 94.5 4.6 0.0001 38.6 23.7 79 51-146 238-316 (524)
233 KOG4649 PQQ (pyrrolo-quinoline 94.5 3.2 7E-05 36.9 16.6 158 51-236 55-219 (354)
234 PF14583 Pectate_lyase22: Olig 94.5 2.1 4.6E-05 40.4 15.1 135 34-188 14-181 (386)
235 PRK13616 lipoprotein LpqB; Pro 94.5 6.2 0.00013 39.8 19.7 103 153-277 349-472 (591)
236 KOG1215 Low-density lipoprotei 94.4 3.8 8.1E-05 43.5 18.8 189 102-319 438-631 (877)
237 PF00930 DPPIV_N: Dipeptidyl p 94.3 3.6 7.7E-05 38.6 16.8 135 115-268 198-344 (353)
238 KOG0288 WD40 repeat protein Ti 94.3 1.9 4.1E-05 40.5 14.1 135 63-223 314-451 (459)
239 TIGR03547 muta_rot_YjhT mutatr 94.3 4.5 9.7E-05 37.6 23.6 100 59-172 17-126 (346)
240 KOG0268 Sof1-like rRNA process 94.3 0.58 1.3E-05 43.1 10.7 155 104-281 191-345 (433)
241 KOG0283 WD40 repeat-containing 94.2 3.3 7.2E-05 41.9 16.6 162 49-235 410-577 (712)
242 PHA03098 kelch-like protein; P 94.2 4.6 0.0001 40.1 18.1 152 59-236 342-513 (534)
243 KOG0303 Actin-binding protein 94.1 5.3 0.00011 37.5 16.9 194 42-268 125-326 (472)
244 KOG3881 Uncharacterized conser 94.0 1.1 2.4E-05 41.7 11.9 137 50-215 204-342 (412)
245 KOG1445 Tumor-specific antigen 93.9 0.66 1.4E-05 45.8 10.7 182 5-216 680-871 (1012)
246 PF14339 DUF4394: Domain of un 93.9 4.2 9.1E-05 35.7 21.3 132 101-243 27-171 (236)
247 PF05935 Arylsulfotrans: Aryls 93.8 7.2 0.00016 38.3 28.3 155 60-236 114-303 (477)
248 KOG0319 WD40-repeat-containing 93.8 2.2 4.8E-05 42.8 14.2 152 106-281 25-179 (775)
249 KOG0640 mRNA cleavage stimulat 93.4 2.8 6E-05 38.1 13.0 193 51-270 219-415 (430)
250 COG0823 TolB Periplasmic compo 93.2 1.3 2.8E-05 42.7 11.8 95 158-268 242-342 (425)
251 KOG0306 WD40-repeat-containing 93.2 11 0.00023 38.4 19.1 200 51-282 457-665 (888)
252 PLN02193 nitrile-specifier pro 93.2 9 0.00019 37.5 22.8 196 103-313 168-382 (470)
253 PF06739 SBBP: Beta-propeller 93.2 0.12 2.7E-06 31.5 3.1 22 154-175 13-34 (38)
254 PF02191 OLF: Olfactomedin-lik 93.2 5.9 0.00013 35.3 17.4 150 59-225 78-240 (250)
255 TIGR03548 mutarot_permut cycli 93.1 7.1 0.00015 36.0 22.0 116 59-186 72-197 (323)
256 KOG3881 Uncharacterized conser 93.1 7.7 0.00017 36.3 18.1 141 128-281 173-320 (412)
257 KOG0307 Vesicle coat complex C 93.1 0.9 2E-05 47.6 10.8 211 52-293 68-292 (1049)
258 TIGR03548 mutarot_permut cycli 93.0 7.2 0.00016 35.9 25.7 119 112-243 72-201 (323)
259 KOG1517 Guanine nucleotide bin 93.0 6.4 0.00014 41.6 16.4 205 55-280 1172-1380(1387)
260 KOG0973 Histone transcription 92.7 15 0.00033 38.6 18.9 122 154-287 130-258 (942)
261 KOG0771 Prolactin regulatory e 92.4 9.7 0.00021 35.8 15.8 197 52-281 148-354 (398)
262 KOG0308 Conserved WD40 repeat- 92.4 4.2 9.1E-05 40.5 13.7 205 55-282 31-244 (735)
263 KOG3914 WD repeat protein WDR4 92.4 5.3 0.00011 37.4 13.8 164 49-237 63-226 (390)
264 KOG0973 Histone transcription 92.2 5.6 0.00012 41.6 15.1 128 154-287 70-206 (942)
265 KOG0308 Conserved WD40 repeat- 91.9 6 0.00013 39.4 14.1 164 50-236 119-287 (735)
266 smart00284 OLF Olfactomedin-li 91.8 9.1 0.0002 34.2 17.3 155 60-233 84-251 (255)
267 KOG0292 Vesicle coat complex C 91.8 18 0.0004 37.7 19.5 111 155-280 208-320 (1202)
268 PF05935 Arylsulfotrans: Aryls 91.8 14 0.00031 36.2 21.9 203 54-270 153-435 (477)
269 KOG0276 Vesicle coat complex C 91.6 16 0.00035 36.5 16.8 153 55-236 62-217 (794)
270 KOG2919 Guanine nucleotide-bin 91.5 8.9 0.00019 35.2 13.8 197 50-270 160-359 (406)
271 KOG2321 WD40 repeat protein [G 91.5 12 0.00026 37.0 15.4 126 51-192 136-267 (703)
272 TIGR03074 PQQ_membr_DH membran 91.4 9.3 0.0002 39.8 15.9 118 112-237 194-347 (764)
273 PF14583 Pectate_lyase22: Olig 91.3 5.1 0.00011 37.8 12.7 122 133-268 15-141 (386)
274 PLN00033 photosystem II stabil 91.1 15 0.00032 35.2 29.0 196 50-270 89-299 (398)
275 PF14517 Tachylectin: Tachylec 91.1 1 2.2E-05 39.4 7.3 149 104-270 37-196 (229)
276 PRK13616 lipoprotein LpqB; Pro 91.0 19 0.00041 36.4 23.8 69 206-280 449-526 (591)
277 KOG1517 Guanine nucleotide bin 91.0 24 0.00052 37.6 20.2 199 61-281 1124-1333(1387)
278 PF02191 OLF: Olfactomedin-lik 91.0 11 0.00024 33.6 18.3 149 104-270 72-238 (250)
279 KOG0301 Phospholipase A2-activ 90.9 19 0.00042 36.3 16.8 186 49-281 102-288 (745)
280 KOG0299 U3 snoRNP-associated p 90.9 13 0.00027 35.6 14.7 155 51-231 289-453 (479)
281 KOG2111 Uncharacterized conser 90.9 13 0.00027 34.0 19.6 176 70-281 75-256 (346)
282 KOG1188 WD40 repeat protein [G 90.6 8.2 0.00018 35.5 12.8 149 61-236 41-198 (376)
283 PLN02153 epithiospecifier prot 90.6 14 0.00031 34.2 22.5 197 104-313 26-256 (341)
284 KOG0650 WD40 repeat nucleolar 90.6 1.3 2.9E-05 43.4 8.2 149 51-231 524-677 (733)
285 KOG0288 WD40 repeat protein Ti 90.5 12 0.00026 35.3 14.1 125 129-268 323-448 (459)
286 KOG0281 Beta-TrCP (transducin 90.4 3 6.4E-05 38.5 9.8 180 59-281 246-428 (499)
287 KOG1036 Mitotic spindle checkp 90.4 14 0.0003 33.6 18.0 150 50-236 15-165 (323)
288 KOG1009 Chromatin assembly com 90.3 1.7 3.7E-05 40.7 8.4 121 139-268 54-182 (434)
289 PF08553 VID27: VID27 cytoplas 90.0 10 0.00022 39.4 14.6 159 47-233 479-646 (794)
290 PLN00033 photosystem II stabil 89.6 20 0.00043 34.3 15.6 139 157-315 242-388 (398)
291 KOG0642 Cell-cycle nuclear pro 89.5 13 0.00028 36.4 13.9 199 52-277 348-557 (577)
292 PF14870 PSII_BNR: Photosynthe 89.5 17 0.00036 33.4 18.0 154 51-231 147-301 (302)
293 PLN02193 nitrile-specifier pro 89.4 22 0.00049 34.7 24.3 165 112-287 228-417 (470)
294 KOG4649 PQQ (pyrrolo-quinoline 89.3 15 0.00034 32.8 16.2 140 62-236 25-167 (354)
295 KOG1215 Low-density lipoprotei 89.3 26 0.00057 37.2 17.7 180 52-268 440-626 (877)
296 PF14870 PSII_BNR: Photosynthe 88.9 19 0.0004 33.1 26.0 195 49-278 17-212 (302)
297 KOG0295 WD40 repeat-containing 88.6 21 0.00045 33.3 23.0 238 51-314 111-392 (406)
298 KOG0294 WD40 repeat-containing 88.6 19 0.00042 32.9 19.2 180 62-281 99-281 (362)
299 COG4222 Uncharacterized protei 88.5 4 8.6E-05 38.7 9.7 70 168-237 159-248 (391)
300 KOG2315 Predicted translation 88.0 27 0.00058 34.3 14.9 117 129-270 252-373 (566)
301 COG4247 Phy 3-phytase (myo-ino 87.9 19 0.00042 32.1 22.7 100 128-236 126-236 (364)
302 KOG2394 WD40 protein DMR-N9 [G 87.8 2 4.4E-05 41.7 7.3 95 153-261 290-384 (636)
303 KOG1538 Uncharacterized conser 87.5 35 0.00075 34.6 15.9 154 102-270 14-201 (1081)
304 KOG0771 Prolactin regulatory e 87.5 13 0.00029 34.9 12.2 165 50-234 188-356 (398)
305 KOG0641 WD40 repeat protein [G 87.4 19 0.00041 31.4 14.8 74 154-236 232-305 (350)
306 COG4447 Uncharacterized protei 86.6 10 0.00023 34.1 10.5 185 1-222 1-189 (339)
307 PF06739 SBBP: Beta-propeller 86.5 0.58 1.3E-05 28.5 2.0 18 253-270 14-31 (38)
308 PRK13684 Ycf48-like protein; P 86.5 28 0.0006 32.4 22.7 105 154-270 173-278 (334)
309 COG4247 Phy 3-phytase (myo-ino 86.4 23 0.00051 31.5 15.3 144 164-315 66-223 (364)
310 PF14339 DUF4394: Domain of un 86.2 23 0.0005 31.2 17.6 167 49-236 27-215 (236)
311 PF14517 Tachylectin: Tachylec 86.1 23 0.00049 31.1 12.7 102 154-270 34-148 (229)
312 KOG1963 WD40 repeat protein [G 86.1 45 0.00097 34.5 16.7 164 52-236 209-377 (792)
313 PF00400 WD40: WD domain, G-be 85.6 4.1 8.8E-05 24.1 5.6 34 43-76 6-39 (39)
314 KOG0313 Microtubule binding pr 85.5 32 0.0007 32.2 13.8 122 42-184 254-377 (423)
315 KOG2315 Predicted translation 85.0 25 0.00054 34.6 13.0 100 52-174 274-375 (566)
316 KOG4328 WD40 protein [Function 85.0 38 0.00082 32.6 14.4 165 50-234 324-495 (498)
317 KOG2321 WD40 repeat protein [G 84.5 45 0.00098 33.1 18.9 172 52-236 55-260 (703)
318 KOG1408 WD40 repeat protein [F 84.5 42 0.0009 34.3 14.5 75 207-283 599-673 (1080)
319 KOG0276 Vesicle coat complex C 84.4 48 0.001 33.3 19.4 157 51-236 16-173 (794)
320 PF00930 DPPIV_N: Dipeptidyl p 84.4 35 0.00077 31.8 16.1 148 48-221 183-344 (353)
321 KOG0650 WD40 repeat nucleolar 84.3 47 0.001 33.1 15.8 112 153-281 521-637 (733)
322 KOG0281 Beta-TrCP (transducin 83.9 14 0.00029 34.3 10.2 142 112-282 246-389 (499)
323 KOG1963 WD40 repeat protein [G 83.1 15 0.00032 37.8 11.0 116 51-184 254-376 (792)
324 KOG1009 Chromatin assembly com 82.9 12 0.00026 35.3 9.5 112 101-232 66-193 (434)
325 KOG1272 WD40-repeat-containing 82.6 6.9 0.00015 37.5 8.1 194 48-281 129-323 (545)
326 PF08553 VID27: VID27 cytoplas 82.4 68 0.0015 33.6 17.1 158 103-279 483-645 (794)
327 TIGR03074 PQQ_membr_DH membran 82.2 69 0.0015 33.5 26.1 163 60-237 194-425 (764)
328 KOG2394 WD40 protein DMR-N9 [G 80.7 6.4 0.00014 38.4 7.2 72 206-282 292-363 (636)
329 TIGR03547 muta_rot_YjhT mutatr 80.6 48 0.001 30.7 20.2 67 112-186 17-96 (346)
330 KOG1408 WD40 repeat protein [F 80.3 23 0.0005 36.1 11.0 114 103-235 599-714 (1080)
331 KOG0647 mRNA export protein (c 79.6 49 0.0011 30.2 15.6 189 52-268 117-310 (347)
332 PF10647 Gmad1: Lipoprotein Lp 77.8 50 0.0011 29.3 20.9 204 50-286 25-242 (253)
333 KOG1445 Tumor-specific antigen 77.6 22 0.00047 35.7 9.8 69 159-236 683-752 (1012)
334 PF13570 PQQ_3: PQQ-like domai 77.2 11 0.00024 22.7 5.4 24 209-234 16-39 (40)
335 KOG0322 G-protein beta subunit 77.2 53 0.0011 29.5 11.2 68 154-231 252-320 (323)
336 KOG3567 Peptidylglycine alpha- 77.0 4.1 8.9E-05 39.0 4.7 34 153-186 466-499 (501)
337 TIGR02608 delta_60_rpt delta-6 76.9 3.7 7.9E-05 27.3 3.2 31 156-186 3-40 (55)
338 PF02897 Peptidase_S9_N: Proly 76.8 69 0.0015 30.4 21.7 202 52-281 127-357 (414)
339 PF10647 Gmad1: Lipoprotein Lp 76.2 56 0.0012 29.0 16.7 96 154-264 24-124 (253)
340 KOG3545 Olfactomedin and relat 75.8 57 0.0012 28.9 12.6 143 112-270 77-237 (249)
341 PF02897 Peptidase_S9_N: Proly 75.2 77 0.0017 30.1 18.6 117 104-236 127-262 (414)
342 KOG4328 WD40 protein [Function 74.4 64 0.0014 31.1 11.7 120 51-184 372-496 (498)
343 KOG0267 Microtubule severing p 73.5 34 0.00074 34.8 10.1 182 51-268 73-255 (825)
344 KOG0305 Anaphase promoting com 73.4 97 0.0021 30.5 16.8 198 48-281 217-419 (484)
345 KOG0918 Selenium-binding prote 73.1 68 0.0015 30.5 11.4 106 128-236 229-344 (476)
346 KOG3567 Peptidylglycine alpha- 72.8 6.5 0.00014 37.7 4.9 34 203-236 465-498 (501)
347 KOG0918 Selenium-binding prote 72.3 25 0.00055 33.3 8.5 83 154-236 312-436 (476)
348 PF11768 DUF3312: Protein of u 72.2 65 0.0014 31.9 11.6 72 102-186 261-332 (545)
349 KOG2395 Protein involved in va 70.9 60 0.0013 32.0 10.9 121 128-268 356-488 (644)
350 COG5276 Uncharacterized conser 69.9 90 0.002 28.6 21.4 184 102-316 130-318 (370)
351 KOG0301 Phospholipase A2-activ 69.0 1.4E+02 0.003 30.4 18.6 107 154-279 141-247 (745)
352 KOG3914 WD repeat protein WDR4 68.9 54 0.0012 30.9 9.8 116 154-281 63-181 (390)
353 PF07494 Reg_prop: Two compone 68.4 6.8 0.00015 21.0 2.5 18 154-171 5-22 (24)
354 KOG3545 Olfactomedin and relat 68.3 87 0.0019 27.8 12.4 116 104-233 125-245 (249)
355 PRK14131 N-acetylneuraminic ac 68.2 1.1E+02 0.0023 28.8 14.8 95 163-270 37-147 (376)
356 PF00400 WD40: WD domain, G-be 66.9 13 0.00029 21.7 4.0 27 206-232 13-39 (39)
357 KOG0307 Vesicle coat complex C 66.6 31 0.00068 36.7 8.6 166 52-245 120-294 (1049)
358 KOG0274 Cdc4 and related F-box 66.5 1.5E+02 0.0032 29.8 20.5 190 50-283 251-443 (537)
359 PF13970 DUF4221: Domain of un 66.0 1.1E+02 0.0024 28.2 12.5 148 128-279 67-240 (333)
360 KOG0270 WD40 repeat-containing 65.4 1.3E+02 0.0029 28.9 16.1 189 53-280 248-448 (463)
361 smart00564 PQQ beta-propeller 65.2 14 0.0003 20.9 3.6 26 112-143 6-31 (33)
362 KOG1063 RNA polymerase II elon 65.2 1.7E+02 0.0036 29.9 15.0 158 50-225 269-428 (764)
363 PF01011 PQQ: PQQ enzyme repea 64.8 27 0.00059 20.8 5.3 27 216-244 1-27 (38)
364 KOG1272 WD40-repeat-containing 64.1 39 0.00085 32.6 8.1 139 102-269 131-269 (545)
365 KOG2395 Protein involved in va 63.7 1.6E+02 0.0034 29.3 12.1 153 55-233 340-499 (644)
366 PF05567 Neisseria_PilC: Neiss 63.5 13 0.00028 34.7 4.9 56 128-184 181-240 (335)
367 KOG0305 Anaphase promoting com 62.5 1.6E+02 0.0035 28.9 14.2 143 50-222 303-450 (484)
368 KOG1310 WD40 repeat protein [G 62.3 1.2E+02 0.0025 30.3 11.0 165 44-225 46-221 (758)
369 PF11768 DUF3312: Protein of u 61.3 1.3E+02 0.0027 30.0 11.2 72 154-236 260-331 (545)
370 KOG0302 Ribosome Assembly prot 61.2 1.5E+02 0.0032 28.0 13.2 166 44-236 207-380 (440)
371 smart00108 B_lectin Bulb-type 61.2 71 0.0015 24.3 10.0 53 157-228 56-108 (114)
372 PF15416 DUF4623: Domain of un 61.0 1.1E+02 0.0023 28.6 10.0 84 153-236 182-273 (442)
373 cd00028 B_lectin Bulb-type man 60.8 73 0.0016 24.3 9.2 55 156-229 56-110 (116)
374 KOG4693 Uncharacterized conser 60.5 1.3E+02 0.0028 27.2 14.1 187 59-269 88-309 (392)
375 KOG4227 WD40 repeat protein [G 60.2 1E+02 0.0022 29.3 9.8 123 153-280 56-178 (609)
376 KOG1188 WD40 repeat protein [G 59.8 1.5E+02 0.0032 27.6 10.7 163 50-231 72-241 (376)
377 PF14298 DUF4374: Domain of un 56.4 2E+02 0.0043 27.9 13.8 57 128-186 367-427 (435)
378 KOG0649 WD40 repeat protein [G 55.9 1.5E+02 0.0033 26.4 14.7 114 153-280 114-234 (325)
379 KOG0277 Peroxisomal targeting 54.8 1.6E+02 0.0035 26.4 14.5 156 51-236 63-223 (311)
380 KOG4283 Transcription-coupled 54.5 1.8E+02 0.0038 26.7 10.5 126 154-283 44-178 (397)
381 KOG0322 G-protein beta subunit 53.9 33 0.00072 30.7 5.4 66 206-276 253-318 (323)
382 KOG4547 WD40 repeat-containing 53.7 2.4E+02 0.0052 28.0 13.9 99 128-244 80-181 (541)
383 KOG1524 WD40 repeat-containing 52.3 2.5E+02 0.0055 27.9 14.0 23 54-76 110-132 (737)
384 KOG0269 WD40 repeat-containing 51.2 2.3E+02 0.005 29.4 11.4 162 103-280 42-206 (839)
385 PF08309 LVIVD: LVIVD repeat; 51.1 58 0.0013 20.2 5.0 29 207-237 4-32 (42)
386 PF11161 DUF2944: Protein of u 50.9 99 0.0022 26.1 7.5 69 207-280 64-134 (187)
387 PF15492 Nbas_N: Neuroblastoma 50.6 1.2E+02 0.0026 27.4 8.5 36 207-244 46-81 (282)
388 TIGR03803 Gloeo_Verruco Gloeo_ 50.5 40 0.00086 20.0 3.7 24 164-187 1-29 (34)
389 KOG1538 Uncharacterized conser 50.0 3.1E+02 0.0066 28.2 21.7 202 50-283 14-253 (1081)
390 KOG1310 WD40 repeat protein [G 49.5 1.6E+02 0.0034 29.4 9.5 125 101-236 51-180 (758)
391 PF04762 IKI3: IKI3 family; I 49.2 3.7E+02 0.0081 29.0 16.4 117 103-233 24-149 (928)
392 KOG0269 WD40 repeat-containing 48.2 1.6E+02 0.0036 30.4 9.8 157 52-235 91-251 (839)
393 PF07250 Glyoxal_oxid_N: Glyox 47.9 1.7E+02 0.0037 25.9 9.1 77 229-313 49-133 (243)
394 PF13964 Kelch_6: Kelch motif 46.8 69 0.0015 20.1 5.0 30 112-141 11-41 (50)
395 PF15416 DUF4623: Domain of un 46.1 1.4E+02 0.003 27.9 8.2 82 102-184 184-272 (442)
396 KOG1523 Actin-related protein 44.8 2.6E+02 0.0056 25.9 12.8 155 52-231 14-173 (361)
397 KOG1063 RNA polymerase II elon 43.5 3.8E+02 0.0083 27.5 15.1 168 101-281 268-437 (764)
398 PF15492 Nbas_N: Neuroblastoma 42.9 2.5E+02 0.0053 25.5 9.2 74 107-190 4-80 (282)
399 PRK12690 flgF flagellar basal 42.4 1.4E+02 0.003 26.3 7.8 13 208-220 136-148 (238)
400 PF03055 RPE65: Retinal pigmen 42.2 3.4E+02 0.0074 26.6 11.8 76 104-187 124-207 (486)
401 KOG1034 Transcriptional repres 41.7 2.9E+02 0.0064 25.7 9.6 106 165-281 104-211 (385)
402 PF13088 BNR_2: BNR repeat-lik 40.1 2.6E+02 0.0056 24.5 12.6 103 208-313 162-275 (275)
403 PF05887 Trypan_PARP: Procycli 39.3 9.9 0.00021 30.0 0.0 16 4-19 5-20 (143)
404 KOG4227 WD40 repeat protein [G 38.9 3.5E+02 0.0077 25.8 12.2 122 101-236 57-181 (609)
405 COG5276 Uncharacterized conser 37.3 3.4E+02 0.0073 25.1 22.4 185 56-281 134-327 (370)
406 PF05567 Neisseria_PilC: Neiss 37.3 43 0.00094 31.2 3.9 29 207-236 210-241 (335)
407 PF09826 Beta_propel: Beta pro 36.5 4.5E+02 0.0097 26.2 14.9 130 104-247 209-370 (521)
408 PRK13613 lipoprotein LpqB; Pro 36.1 4.8E+02 0.01 26.5 20.5 213 50-286 364-587 (599)
409 PF12275 DUF3616: Protein of u 35.8 87 0.0019 29.2 5.6 67 157-224 3-77 (330)
410 KOG0270 WD40 repeat-containing 33.8 4.5E+02 0.0097 25.4 15.8 132 128-279 266-402 (463)
411 KOG0321 WD40 repeat-containing 33.4 5.4E+02 0.012 26.3 12.6 167 52-236 104-303 (720)
412 KOG0379 Kelch repeat-containin 33.3 4.8E+02 0.01 25.6 17.6 188 112-313 70-280 (482)
413 TIGR02171 Fb_sc_TIGR02171 Fibr 33.2 6.4E+02 0.014 27.0 13.1 28 51-78 352-385 (912)
414 PF03178 CPSF_A: CPSF A subuni 33.0 3.8E+02 0.0082 24.4 15.0 110 102-233 90-203 (321)
415 KOG1034 Transcriptional repres 32.6 4.2E+02 0.0091 24.7 11.5 106 60-183 104-211 (385)
416 KOG1332 Vesicle coat complex C 31.4 3.8E+02 0.0083 24.0 10.0 115 105-236 16-136 (299)
417 PRK12694 flgG flagellar basal 31.2 3E+02 0.0065 24.5 8.2 17 153-169 89-105 (260)
418 KOG0274 Cdc4 and related F-box 31.2 5.5E+02 0.012 25.7 20.4 176 63-280 221-399 (537)
419 PF01453 B_lectin: D-mannose b 30.6 1.5E+02 0.0033 22.6 5.4 55 158-230 22-77 (114)
420 KOG4497 Uncharacterized conser 30.4 1.9E+02 0.0042 26.9 6.6 56 205-266 92-148 (447)
421 PF11395 DUF2873: Protein of u 30.3 82 0.0018 18.9 2.9 20 4-23 10-29 (43)
422 KOG2111 Uncharacterized conser 29.7 4.6E+02 0.0099 24.3 17.2 201 51-288 8-219 (346)
423 KOG0264 Nucleosome remodeling 28.9 5.3E+02 0.012 24.8 14.0 118 48-183 227-347 (422)
424 PRK12689 flgF flagellar basal 28.1 3.3E+02 0.0072 24.2 7.8 17 153-169 81-97 (253)
425 TIGR02171 Fb_sc_TIGR02171 Fibr 26.2 5E+02 0.011 27.8 9.6 89 167-271 322-421 (912)
426 KOG2314 Translation initiation 26.1 4.3E+02 0.0093 26.5 8.5 61 205-270 493-556 (698)
427 smart00320 WD40 WD40 repeats. 25.5 1.1E+02 0.0024 15.8 5.2 26 50-75 14-39 (40)
428 PRK12817 flgG flagellar basal 24.8 4.4E+02 0.0096 23.5 8.1 15 208-222 152-166 (260)
429 COG5167 VID27 Protein involved 24.6 7.2E+02 0.016 24.9 12.0 156 49-234 467-632 (776)
430 KOG3621 WD40 repeat-containing 23.9 3.5E+02 0.0077 27.8 7.7 101 162-270 42-144 (726)
431 TIGR02488 flgG_G_neg flagellar 23.6 4.2E+02 0.0092 23.5 7.7 17 153-169 87-103 (259)
432 PF12894 Apc4_WD40: Anaphase-p 23.1 2.1E+02 0.0045 18.1 4.4 30 51-81 14-43 (47)
433 KOG0321 WD40 repeat-containing 22.7 3.5E+02 0.0076 27.5 7.3 72 157-235 104-176 (720)
434 COG4222 Uncharacterized protei 22.3 7E+02 0.015 23.9 9.9 48 219-268 159-217 (391)
435 KOG3617 WD40 and TPR repeat-co 22.3 5.6E+02 0.012 27.4 8.8 123 53-189 64-226 (1416)
436 COG5167 VID27 Protein involved 21.9 8.1E+02 0.018 24.5 12.2 136 128-279 490-630 (776)
437 PRK12642 flgF flagellar basal 21.9 3.1E+02 0.0068 24.1 6.5 17 153-169 73-89 (241)
438 KOG4640 Anaphase-promoting com 21.5 1.7E+02 0.0037 29.5 5.0 41 40-81 55-95 (665)
439 PRK13614 lipoprotein LpqB; Pro 21.4 5.2E+02 0.011 26.1 8.5 26 210-235 388-414 (573)
440 KOG1240 Protein kinase contain 21.4 1.2E+03 0.025 26.2 13.1 166 106-280 1054-1224(1431)
441 PF15390 DUF4613: Domain of un 21.0 5.4E+02 0.012 26.1 8.2 68 241-313 331-400 (671)
442 PF04053 Coatomer_WDAD: Coatom 20.8 7.9E+02 0.017 23.9 9.8 62 153-231 32-94 (443)
443 KOG0295 WD40 repeat-containing 20.7 7.3E+02 0.016 23.5 20.0 158 50-236 195-366 (406)
444 KOG3621 WD40 repeat-containing 20.5 3.4E+02 0.0075 27.8 6.9 73 159-235 82-155 (726)
445 PF07172 GRP: Glycine rich pro 20.2 1.5E+02 0.0032 22.1 3.4 9 9-17 4-12 (95)
446 KOG4714 Nucleoporin [Nuclear s 20.1 3.2E+02 0.007 24.6 5.9 77 102-188 181-259 (319)
No 1
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.97 E-value=7.5e-28 Score=214.69 Aligned_cols=227 Identities=26% Similarity=0.395 Sum_probs=164.1
Q ss_pred ceeeeEEcC-CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDD-VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~-~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
+|||++|++ +|++||++...++|+++++.++. .. .+..+ .|.|++++.+++++|++. . .
T Consensus 1 l~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~-----~~---~~~~~-----~~~G~~~~~~~g~l~v~~--~-----~ 60 (246)
T PF08450_consen 1 LGEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGE-----VE---VIDLP-----GPNGMAFDRPDGRLYVAD--S-----G 60 (246)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTTTE-----EE---EEESS-----SEEEEEEECTTSEEEEEE--T-----T
T ss_pred CCcceEEECCCCEEEEEEcCCCEEEEEECCCCe-----EE---EEecC-----CCceEEEEccCCEEEEEE--c-----C
Confidence 589999998 77888888889999999964333 11 33333 378999994479999964 3 2
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC--------CeEEEEccCCcEEEEecCCccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS--------SKIWKVGVEGQLLSIIRSPLFTAKEW 200 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~--------~~I~~~d~~g~~~~~~~~~~~~~~~~ 200 (335)
.+.++|++++++...........+...|||+++|++|++|++++.. ++|++++++++....+.
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~--------- 131 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVAD--------- 131 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEE---------
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEec---------
Confidence 3677799999776444442112147999999999999999998754 78999999966544322
Q ss_pred cccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCce---eEEEE-eccCCcCCCCCCeEEEcCCCcEEEEecCCCeE
Q 039428 201 YKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEE---EVKLI-ELRGGSSLSLGDGLALLSPTKLVVAGNPYPSA 275 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~---~~~~~-~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~ 275 (335)
....||||+++||| .|||+++..++|++++++.... ..+.+ ...+ . ...||||++|++|+||||.+..+++
T Consensus 132 --~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~-~g~pDG~~vD~~G~l~va~~~~~~I 207 (246)
T PF08450_consen 132 --GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPG-G-PGYPDGLAVDSDGNLWVADWGGGRI 207 (246)
T ss_dssp --EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SS-S-SCEEEEEEEBTTS-EEEEEETTTEE
T ss_pred --CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCC-C-CcCCCcceEcCCCCEEEEEcCCCEE
Confidence 23459999999999 8999999999999999975421 22333 3332 1 2459999999999999997766888
Q ss_pred EEEEcCCCcEEEEEeeeecCCCCCcceEEEEe---CCeEEEEe
Q 039428 276 RLVESSDGWETASVVAKFNGPTHRVATAATVK---DGRVYLSH 315 (335)
Q Consensus 276 ~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~---~g~lyV~~ 315 (335)
.+++.. | +++..+..| ...||+++|. .++|||++
T Consensus 208 ~~~~p~-G----~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 208 VVFDPD-G----KLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEETT-S----CEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred EEECCC-c----cEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 877754 3 455566666 3479999994 58899965
No 2
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.3e-24 Score=197.63 Aligned_cols=254 Identities=18% Similarity=0.271 Sum_probs=176.8
Q ss_pred eEEEcCCCcceeeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE
Q 039428 41 VYQYHSPSFLCETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF 119 (335)
Q Consensus 41 ~~~~~~~~~~pegia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~ 119 (335)
...+.....+.||+.|+++++ +||+++.+++|+++++.+++ .+ ....|.. .+.+..++. +++|+++
T Consensus 17 ~~~~~~~~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~-----~~---~~~~p~~---~~~~~~~d~-~g~Lv~~- 83 (307)
T COG3386 17 VTLLDKGATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGK-----KR---VFPSPGG---FSSGALIDA-GGRLIAC- 83 (307)
T ss_pred eeEeecccccccCccCcCCCCEEEEEeCCCCeEEEecCCcCc-----eE---EEECCCC---cccceeecC-CCeEEEE-
Confidence 444555677899999999988 66666999999999965454 12 3345553 467888885 7888884
Q ss_pred ecCCCCccceEEEEECCCCeE-EEEeecCCCccCCCCCCceeECCCCcEEEEeCC-----------CCeEEEEccCCcEE
Q 039428 120 TDVLGNKYSALAAYDLSTWKR-LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-----------SSKIWKVGVEGQLL 187 (335)
Q Consensus 120 ~D~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-----------~~~I~~~d~~g~~~ 187 (335)
+. .+..++++.+.. ....... .+.+.++|||+.+|++|++||++.. .++||+++++|...
T Consensus 84 -~~------g~~~~~~~~~~~~t~~~~~~-~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~ 155 (307)
T COG3386 84 -EH------GVRLLDPDTGGKITLLAEPE-DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVV 155 (307)
T ss_pred -cc------ccEEEeccCCceeEEecccc-CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEE
Confidence 33 377778776655 3223332 2334799999999999999999876 36899999988877
Q ss_pred EEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCC---Cc-eeEEEEeccCCcCCCCCCeEEEcCC
Q 039428 188 SIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRK---EE-EEVKLIELRGGSSLSLGDGLALLSP 262 (335)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~---~~-~~~~~~~~~g~~~~~~pdGia~d~~ 262 (335)
+++.. ....|||||||||| .||++|+..++|+|++.+. .. +....+.... .-+.|||+++|.+
T Consensus 156 ~l~~~----------~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~--~~G~PDG~~vDad 223 (307)
T COG3386 156 RLLDD----------DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDE--EPGLPDGMAVDAD 223 (307)
T ss_pred EeecC----------cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccC--CCCCCCceEEeCC
Confidence 75432 13459999999999 9999999999999999873 11 1222222211 1256999999999
Q ss_pred CcEEEE-ecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEeC---CeEEEEec-cCCCCCcccceeeeeeecC
Q 039428 263 TKLVVA-GNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVKD---GRVYLSHL-LGLGFPNTKKKHLLVEAVF 335 (335)
Q Consensus 263 g~l~va-~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~~---g~lyV~~~-~~~~~~~~~~~~~~~~~~~ 335 (335)
|++|++ ..+...+.++.. ++ +++..+..|. ..|++++|.+ ++|||++. .++. ....+.|+++.+|
T Consensus 224 G~lw~~a~~~g~~v~~~~p-dG----~l~~~i~lP~-~~~t~~~FgG~~~~~L~iTs~~~~~~--~~~~~~~~~G~lf 293 (307)
T COG3386 224 GNLWVAAVWGGGRVVRFNP-DG----KLLGEIKLPV-KRPTNPAFGGPDLNTLYITSARSGMS--RMLTADPLGGGLF 293 (307)
T ss_pred CCEEEecccCCceEEEECC-CC----cEEEEEECCC-CCCccceEeCCCcCEEEEEecCCCCC--ccccccccCceEE
Confidence 999965 332124554443 33 4566666675 5689999964 99999544 4444 3456677777665
No 3
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.88 E-value=1.2e-19 Score=190.15 Aligned_cols=256 Identities=15% Similarity=0.172 Sum_probs=171.8
Q ss_pred CCcceeeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-c-CC--------cCCCCcceEEEeCCCCeE
Q 039428 47 PSFLCETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-E-DD--------VVGNATMGIAVDRPRNRL 115 (335)
Q Consensus 47 ~~~~pegia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~-~~--------~~~~~p~Gi~~d~~~g~l 115 (335)
+-.+|.++++|+. |++|+.+..+++|+++|. ++.+ +. .+.. . .+ ...+.|+||++|++++.|
T Consensus 566 ~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~-~G~~----i~--~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 566 PLKFPGKLAIDLLNNRLFISDSNHNRIVVTDL-DGNF----IV--QIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred cCCCCceEEEECCCCeEEEEECCCCeEEEEeC-CCCE----EE--EEccCCCcCCCCCchhccccCCCcEEEEeCCCCEE
Confidence 3468999999986 556666588999999985 5652 21 1211 0 00 012469999999756779
Q ss_pred EEEEecCCCCccceEEEEECCCCeEEEEeec-------CC----CccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccC
Q 039428 116 LVAFTDVLGNKYSALAAYDLSTWKRLFLTQL-------SG----KSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVE 183 (335)
Q Consensus 116 ~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~-------~~----~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~ 183 (335)
|| +|..++ .|.++|+.++.+...... .+ ..+.++.|+++++|+ +|++||+|+.+++|+++|+.
T Consensus 639 YV--aDt~n~---~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~ 713 (1057)
T PLN02919 639 YV--ADTENH---ALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNIS 713 (1057)
T ss_pred EE--EeCCCc---eEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECC
Confidence 99 576554 599999988876522111 00 001257899999999 68899999999999999987
Q ss_pred CcEEEEe-cCCccc----cccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEec-----------c
Q 039428 184 GQLLSII-RSPLFT----AKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIEL-----------R 246 (335)
Q Consensus 184 g~~~~~~-~~~~~~----~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~-----------~ 246 (335)
+.....+ ++.... .......+..|+||+++|+| +|||+|..+++|.++|+++++ ...+.. .
T Consensus 714 ~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~--~~~~~gg~~~~~~~l~~f 791 (1057)
T PLN02919 714 DGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG--SRLLAGGDPTFSDNLFKF 791 (1057)
T ss_pred CCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc--EEEEEecccccCcccccc
Confidence 6554433 221100 00112245679999999998 699999999999999998752 222210 0
Q ss_pred C-------CcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeee----e-----cCCCCCcceEEEEe-CC
Q 039428 247 G-------GSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAK----F-----NGPTHRVATAATVK-DG 309 (335)
Q Consensus 247 g-------~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~----~-----~~p~~~~Pt~va~~-~g 309 (335)
| ...+..|.|++++++|++||++...+.+++++...+... .+.+. + ....+..|.+++++ +|
T Consensus 792 G~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG 870 (1057)
T PLN02919 792 GDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENG 870 (1057)
T ss_pred cCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCceEEEEeCCC
Confidence 0 012457999999999999999887688998887554221 22221 0 01135679999996 88
Q ss_pred eEEEEecc
Q 039428 310 RVYLSHLL 317 (335)
Q Consensus 310 ~lyV~~~~ 317 (335)
+|||++..
T Consensus 871 ~lyVaDt~ 878 (1057)
T PLN02919 871 RLFVADTN 878 (1057)
T ss_pred CEEEEECC
Confidence 99997643
No 4
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.84 E-value=1.8e-18 Score=181.27 Aligned_cols=251 Identities=16% Similarity=0.167 Sum_probs=170.5
Q ss_pred Hhhhhhhhhh-hhhhhhcCCCceeEEEc-----------C--C------------CcceeeeEEcCCCCEEEEE-ecCCe
Q 039428 19 AIPIAYIISI-ELAIAMAKPATHVYQYH-----------S--P------------SFLCETAKWDDVGRRFLVS-FLDGG 71 (335)
Q Consensus 19 ~~p~~~~~~~-~~~~~~~d~~~~~~~~~-----------~--~------------~~~pegia~d~~g~~~~~~-~~~~~ 71 (335)
..|-+++++. .+.++++|...+++... + . -..|.|++++++++.+|++ ..+++
T Consensus 568 ~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~ 647 (1057)
T PLN02919 568 KFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHA 647 (1057)
T ss_pred CCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCce
Confidence 4455677765 45688988877766541 1 0 1259999999998866665 77789
Q ss_pred EEEEECCCCCCCcceeeeeEEeec-------C-C-----cCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC
Q 039428 72 VGQVLVPDEYSPGTVLEEVKLVKE-------D-D-----VVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW 138 (335)
Q Consensus 72 I~~~d~~~g~~~~~v~~~~~~~~~-------~-~-----~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~ 138 (335)
|.++|..++. +. .+... . + ...+.|.+++++++++++||+ |..+ ++|++||..++
T Consensus 648 Ir~id~~~~~-----V~--tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVa--d~~~---~~I~v~d~~~g 715 (1057)
T PLN02919 648 LREIDFVNET-----VR--TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIA--MAGQ---HQIWEYNISDG 715 (1057)
T ss_pred EEEEecCCCE-----EE--EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEE--ECCC---CeEEEEECCCC
Confidence 9999854332 22 12110 0 0 012578999999878999994 5544 45999999887
Q ss_pred eEEEEe-ec-----CC---CccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEE-ec-CCcc-----c-----
Q 039428 139 KRLFLT-QL-----SG---KSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSI-IR-SPLF-----T----- 196 (335)
Q Consensus 139 ~~~~~~-~~-----~~---~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~-~~-~~~~-----~----- 196 (335)
...... +. .+ ....+..|++++++++|+ +||+|+.+++|+++|+++..... .+ .+.+ .
T Consensus 716 ~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 716 VTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred eEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 654211 10 00 001257899999999986 99999999999999987433222 21 1100 0
Q ss_pred cccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCC----------cCCCCCCeEEEcCCCcEE
Q 039428 197 AKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG----------SSLSLGDGLALLSPTKLV 266 (335)
Q Consensus 197 ~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~----------~~~~~pdGia~d~~g~l~ 266 (335)
.++....+..|.|++++++|.|||+|..+++|.+||++++ .+..+...|. ..+..|.||+++++|++|
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg--~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~ly 873 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATK--RVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLF 873 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCC--eEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEE
Confidence 0011123557999999999999999999999999999876 4443332221 124579999999999999
Q ss_pred EEecCCCeEEEEEcCCC
Q 039428 267 VAGNPYPSARLVESSDG 283 (335)
Q Consensus 267 va~~~~~~~~v~~~~~~ 283 (335)
|++...+.+++++...+
T Consensus 874 VaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 874 VADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEECCCCEEEEEECCCC
Confidence 99877688999987654
No 5
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.80 E-value=2.4e-17 Score=142.41 Aligned_cols=232 Identities=16% Similarity=0.136 Sum_probs=169.8
Q ss_pred CCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 47 PSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
.+..|..++.++||.+||.....+.|-++|+.+|+ ++ .. |--.|.+|+||.+++ +|..|+ .|..
T Consensus 60 ~G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGe-----v~---~y--pLg~Ga~Phgiv~gp-dg~~Wi--td~~--- 123 (353)
T COG4257 60 NGSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGE-----VE---TY--PLGSGASPHGIVVGP-DGSAWI--TDTG--- 123 (353)
T ss_pred CCCCccccccCCCCceEEecCccccceecCCCCCc-----eE---EE--ecCCCCCCceEEECC-CCCeeE--ecCc---
Confidence 35578999999999999999889999999987666 23 22 222345899999998 899999 4664
Q ss_pred cceEEEEECCCCeEE-EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 127 YSALAAYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
..|.++|+++.++. +..+.+ ......+-..+|++|++|++.+ .|.--|+||.....+++.. +++.
T Consensus 124 -~aI~R~dpkt~evt~f~lp~~---~a~~nlet~vfD~~G~lWFt~q-~G~yGrLdPa~~~i~vfpa---------PqG~ 189 (353)
T COG4257 124 -LAIGRLDPKTLEVTRFPLPLE---HADANLETAVFDPWGNLWFTGQ-IGAYGRLDPARNVISVFPA---------PQGG 189 (353)
T ss_pred -ceeEEecCcccceEEeecccc---cCCCcccceeeCCCccEEEeec-cccceecCcccCceeeecc---------CCCC
Confidence 25999999888765 333321 1246678899999999999976 4555589998777765432 2567
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC-c
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG-W 284 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~-~ 284 (335)
+|+|||..|||.+|++....+.|.++|+... ..+++..+... -+....+-.|+.|++|++.++.+++..++.... |
T Consensus 190 gpyGi~atpdGsvwyaslagnaiaridp~~~--~aev~p~P~~~-~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW 266 (353)
T COG4257 190 GPYGICATPDGSVWYASLAGNAIARIDPFAG--HAEVVPQPNAL-KAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSW 266 (353)
T ss_pred CCcceEECCCCcEEEEeccccceEEcccccC--CcceecCCCcc-cccccccccCccCcEEEeccCCceeeEeCcccccc
Confidence 8999999999999999999999999999887 55666544321 245678889999999999875455554543322 4
Q ss_pred EEEEEeeeecCCC-CCcceEEEEe-CCeEEEEecc
Q 039428 285 ETASVVAKFNGPT-HRVATAATVK-DGRVYLSHLL 317 (335)
Q Consensus 285 ~~~~~~~~~~~p~-~~~Pt~va~~-~g~lyV~~~~ 317 (335)
.. +..|. ...|.++-++ .|++|.++..
T Consensus 267 ~e------ypLPgs~arpys~rVD~~grVW~sea~ 295 (353)
T COG4257 267 IE------YPLPGSKARPYSMRVDRHGRVWLSEAD 295 (353)
T ss_pred ee------eeCCCCCCCcceeeeccCCcEEeeccc
Confidence 43 22231 3346678887 7999996654
No 6
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=99.77 E-value=1.1e-16 Score=145.37 Aligned_cols=198 Identities=17% Similarity=0.226 Sum_probs=137.8
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeee--------EEeec-----CCcCCCCcceEEEeCCCCe
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEV--------KLVKE-----DDVVGNATMGIAVDRPRNR 114 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~--------~~~~~-----~~~~~~~p~Gi~~d~~~g~ 114 (335)
...||.+.+|+.+.=-++...+++|.+|......+ +... ..... .+...++|.||+++..+|+
T Consensus 53 ~~g~E~~~fd~~~~gp~~~v~dg~il~~~g~~~Gw----v~~~~~~~s~~~~~~~~~~~~~~e~~CGRPLGl~f~~~ggd 128 (376)
T KOG1520|consen 53 LTGPESLLFDPQGGGPYTGVVDGRILKYTGNDDGW----VKFADTKDSTNRSQCCDPGSFETEPLCGRPLGIRFDKKGGD 128 (376)
T ss_pred cCChhhheecccCCCceEEEECCceEEEeccCceE----EEEEeccccccccccCCCcceecccccCCcceEEeccCCCe
Confidence 44678888887776555555566666664221111 1100 00011 1111267999999986779
Q ss_pred EEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-----------------CCeE
Q 039428 115 LLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-----------------SSKI 177 (335)
Q Consensus 115 l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-----------------~~~I 177 (335)
||| +|.. -.|+++++++++.....+ +..++++.+.|++.+|++|.+|+||+. +||+
T Consensus 129 L~V--aDAY----lGL~~V~p~g~~a~~l~~-~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~l~g~~~GRl 201 (376)
T KOG1520|consen 129 LYV--ADAY----LGLLKVGPEGGLAELLAD-EAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAALEGDPTGRL 201 (376)
T ss_pred EEE--Eecc----eeeEEECCCCCcceeccc-cccCeeeeecCceeEcCCCeEEEeccccccchhheEEeeecCCCccce
Confidence 999 5765 359999999886443222 123445789999999999999999973 5899
Q ss_pred EEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCc-eeEEEEeccCCcCCCCCC
Q 039428 178 WKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEE-EEVKLIELRGGSSLSLGD 255 (335)
Q Consensus 178 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~-~~~~~~~~~g~~~~~~pd 255 (335)
.++|+..+..+++-+ .+..|||++++||+ .+.++++...+|.|+.+++.+ ++.+.+.. + ..++||
T Consensus 202 ~~YD~~tK~~~VLld----------~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~-~--LPG~PD 268 (376)
T KOG1520|consen 202 FRYDPSTKVTKVLLD----------GLYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAE-G--LPGYPD 268 (376)
T ss_pred EEecCcccchhhhhh----------cccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhh-c--CCCCCc
Confidence 999998877664432 35679999999999 999999999999999999973 12244431 1 135699
Q ss_pred eEEEcCCCcEEEEe
Q 039428 256 GLALLSPTKLVVAG 269 (335)
Q Consensus 256 Gia~d~~g~l~va~ 269 (335)
.|..+++|++||+-
T Consensus 269 NIR~~~~G~fWVal 282 (376)
T KOG1520|consen 269 NIRRDSTGHFWVAL 282 (376)
T ss_pred ceeECCCCCEEEEE
Confidence 99999999999994
No 7
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.74 E-value=4.3e-16 Score=138.84 Aligned_cols=190 Identities=22% Similarity=0.233 Sum_probs=127.8
Q ss_pred eeeeEEc-CCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecC-Cc-CCCCcceEEEeCCCCeEEEEEecCCCC-c
Q 039428 51 CETAKWD-DVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKED-DV-VGNATMGIAVDRPRNRLLVAFTDVLGN-K 126 (335)
Q Consensus 51 pegia~d-~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~-~~-~~~~p~Gi~~d~~~g~l~v~~~D~~~~-~ 126 (335)
|.|++++ ++|. +|++. .+.+.++|..+++ ++. +...+ +. ....|+.+++|+ +|+||++....... .
T Consensus 42 ~~G~~~~~~~g~-l~v~~-~~~~~~~d~~~g~-----~~~--~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~ 111 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVAD-SGGIAVVDPDTGK-----VTV--LADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASG 111 (246)
T ss_dssp EEEEEEECTTSE-EEEEE-TTCEEEEETTTTE-----EEE--EEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTC
T ss_pred CceEEEEccCCE-EEEEE-cCceEEEecCCCc-----EEE--EeeccCCCcccCCCceEEEcC-CCCEEEEecCCCcccc
Confidence 8999999 5654 55553 3455555865554 221 33221 11 235799999997 89999965432211 1
Q ss_pred c--ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccC--Cc-EE--EEecCCccccc
Q 039428 127 Y--SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVE--GQ-LL--SIIRSPLFTAK 198 (335)
Q Consensus 127 ~--~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~--g~-~~--~~~~~~~~~~~ 198 (335)
. .+|++++++ ++...... .+..||+|+++++|+ +||+|+..++|++++.+ +. .. +.+. .+..
T Consensus 112 ~~~g~v~~~~~~-~~~~~~~~------~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~--~~~~- 181 (246)
T PF08450_consen 112 IDPGSVYRIDPD-GKVTVVAD------GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI--DFPG- 181 (246)
T ss_dssp GGSEEEEEEETT-SEEEEEEE------EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE--E-SS-
T ss_pred ccccceEEECCC-CeEEEEec------CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEE--EcCC-
Confidence 1 469999998 66553322 167899999999985 99999999999999985 33 11 1110 0110
Q ss_pred cccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc-CC-CcEEEEec
Q 039428 199 EWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL-SP-TKLVVAGN 270 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d-~~-g~l~va~~ 270 (335)
....|.|+++|++|+|||+...+++|+++++++. ....+.++. ..|..+++. ++ +.|||+..
T Consensus 182 ----~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~G~--~~~~i~~p~----~~~t~~~fgg~~~~~L~vTta 245 (246)
T PF08450_consen 182 ----GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPDGK--LLREIELPV----PRPTNCAFGGPDGKTLYVTTA 245 (246)
T ss_dssp ----SSCEEEEEEEBTTS-EEEEEETTTEEEEEETTSC--EEEEEE-SS----SSEEEEEEESTTSSEEEEEEB
T ss_pred ----CCcCCCcceEcCCCCEEEEEcCCCEEEEECCCcc--EEEEEcCCC----CCEEEEEEECCCCCEEEEEeC
Confidence 1124999999999999999999999999999976 677787653 348999994 33 57999854
No 8
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.70 E-value=3.5e-14 Score=132.85 Aligned_cols=241 Identities=18% Similarity=0.180 Sum_probs=148.9
Q ss_pred CCcceeeeEEcCCCCEEEEE-ecCCeEEEEECCC-CCCCcceeeeeEEeec----CC---cCCCCcceEEEeCCCCeEEE
Q 039428 47 PSFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPD-EYSPGTVLEEVKLVKE----DD---VVGNATMGIAVDRPRNRLLV 117 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~-g~~~~~v~~~~~~~~~----~~---~~~~~p~Gi~~d~~~g~l~v 117 (335)
.+..|..++++++++.+|++ ..++.|..++... +. +......... +. ..+..|+.+.++|+++.+||
T Consensus 85 ~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~----l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v 160 (345)
T PF10282_consen 85 GGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGS----LGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV 160 (345)
T ss_dssp SSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSE----EEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred CCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcc----cceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence 45678999999999999998 6678887665432 43 1111112211 11 12246899999997778998
Q ss_pred EEecCCCCccceEEEEECCCCe--EEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccC--CcEEEEecC
Q 039428 118 AFTDVLGNKYSALAAYDLSTWK--RLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVE--GQLLSIIRS 192 (335)
Q Consensus 118 ~~~D~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~--g~~~~~~~~ 192 (335)
.|.+.+ +|++|+.+... +.....+.. +....|..++++++| .+||++...+.|.+++.+ ....+.+..
T Consensus 161 --~dlG~D---~v~~~~~~~~~~~l~~~~~~~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~ 233 (345)
T PF10282_consen 161 --PDLGAD---RVYVYDIDDDTGKLTPVDSIKV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQT 233 (345)
T ss_dssp --EETTTT---EEEEEEE-TTS-TEEEEEEEEC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEE
T ss_pred --EecCCC---EEEEEEEeCCCceEEEeecccc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEE
Confidence 566554 48877776543 433222211 125789999999998 599999999999988765 322222211
Q ss_pred CccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCC-c--eeEEEEeccCCcCCCCCCeEEEcCCCc-EEE
Q 039428 193 PLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKE-E--EEVKLIELRGGSSLSLGDGLALLSPTK-LVV 267 (335)
Q Consensus 193 ~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~-~--~~~~~~~~~g~~~~~~pdGia~d~~g~-l~v 267 (335)
- -..|........+.+|+++||| +|||++...+.|..|+++.. + ..+..+...| ..|.+|+++++|+ |||
T Consensus 234 ~-~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G----~~Pr~~~~s~~g~~l~V 308 (345)
T PF10282_consen 234 I-STLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGG----KFPRHFAFSPDGRYLYV 308 (345)
T ss_dssp E-ESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESS----SSEEEEEE-TTSSEEEE
T ss_pred e-eeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCC----CCccEEEEeCCCCEEEE
Confidence 0 0111111112368999999999 99999999999999988542 1 1333444434 3499999999985 888
Q ss_pred EecCCCeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEE
Q 039428 268 AGNPYPSARLVESSDG-WETASVVAKFNGPTHRVATAATV 306 (335)
Q Consensus 268 a~~~~~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~ 306 (335)
++..++.+.+++.+.. .........+..|. |++|.|
T Consensus 309 a~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~---p~ci~f 345 (345)
T PF10282_consen 309 ANQDSNTVSVFDIDPDTGKLTPVGSSVPIPS---PVCIVF 345 (345)
T ss_dssp EETTTTEEEEEEEETTTTEEEEEEEEEESSS---EEEEEE
T ss_pred EecCCCeEEEEEEeCCCCcEEEecccccCCC---CEEEeC
Confidence 8887888988876422 22222222333333 667654
No 9
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=99.68 E-value=2.1e-14 Score=124.34 Aligned_cols=232 Identities=9% Similarity=0.025 Sum_probs=160.1
Q ss_pred CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCC-cCCCCcceEEEeCCCCeEEEEEecCCC
Q 039428 46 SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDD-VVGNATMGIAVDRPRNRLLVAFTDVLG 124 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~-~~~~~p~Gi~~d~~~g~l~v~~~D~~~ 124 (335)
+.+..|.+|.++|+|+.|+++... .|.|+|+++.+ +++ | ..|. ......+-..+|+ .|+||.+.. .+
T Consensus 101 g~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e-----vt~--f-~lp~~~a~~nlet~vfD~-~G~lWFt~q-~G- 168 (353)
T COG4257 101 GSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE-----VTR--F-PLPLEHADANLETAVFDP-WGNLWFTGQ-IG- 168 (353)
T ss_pred CCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc-----eEE--e-ecccccCCCcccceeeCC-CccEEEeec-cc-
Confidence 345679999999999999998433 99999864444 222 2 1222 1112345677896 899999632 21
Q ss_pred CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 125 NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
.--++|+.++.+.. .+. + + ...|+||++.|||.+|++....+.|.++|+.....+. +..|+ +-.
T Consensus 169 ----~yGrLdPa~~~i~v-fpa--P-q-G~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev-----~p~P~--~~~ 232 (353)
T COG4257 169 ----AYGRLDPARNVISV-FPA--P-Q-GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEV-----VPQPN--ALK 232 (353)
T ss_pred ----cceecCcccCceee-ecc--C-C-CCCCcceEECCCCcEEEEeccccceEEcccccCCcce-----ecCCC--ccc
Confidence 12278888775542 222 2 2 5789999999999999999999999999987544332 22221 113
Q ss_pred cccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCc
Q 039428 205 FGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGW 284 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~ 284 (335)
.+...|-.||.|++|+++..++++++||+... ....+++++.. ..|+.|.+|..|++|.++..+|.+-.++...
T Consensus 233 ~gsRriwsdpig~~wittwg~g~l~rfdPs~~--sW~eypLPgs~--arpys~rVD~~grVW~sea~agai~rfdpet-- 306 (353)
T COG4257 233 AGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT--SWIEYPLPGSK--ARPYSMRVDRHGRVWLSEADAGAIGRFDPET-- 306 (353)
T ss_pred ccccccccCccCcEEEeccCCceeeEeCcccc--cceeeeCCCCC--CCcceeeeccCCcEEeeccccCceeecCccc--
Confidence 45778888999999999999999999999987 67778887744 6799999999999999988667665554321
Q ss_pred EEEEEeeeecCCCCCcceEEEEe--CCeEEEEe
Q 039428 285 ETASVVAKFNGPTHRVATAATVK--DGRVYLSH 315 (335)
Q Consensus 285 ~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~ 315 (335)
.....+..|.. .+-++.++ .|++|.++
T Consensus 307 ---a~ftv~p~pr~-n~gn~ql~gr~ge~W~~e 335 (353)
T COG4257 307 ---ARFTVLPIPRP-NSGNIQLDGRPGELWFTE 335 (353)
T ss_pred ---ceEEEecCCCC-CCCceeccCCCCceeecc
Confidence 22233333431 12345554 78999865
No 10
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.63 E-value=1.1e-13 Score=117.48 Aligned_cols=237 Identities=16% Similarity=0.153 Sum_probs=142.8
Q ss_pred cceeeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeC-CCCeEEEEEecCCCCc
Q 039428 49 FLCETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDR-PRNRLLVAFTDVLGNK 126 (335)
Q Consensus 49 ~~pegia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~-~~g~l~v~~~D~~~~~ 126 (335)
...||+.|+.+ +.+||++...+.|.|+|-. .++ +. +..+..|.. .|..+-- ..-..|++.... +
T Consensus 15 ~~GEgp~w~~~~~sLl~VDi~ag~v~r~D~~-qn~----v~-ra~ie~p~~-----ag~ilpv~~~~q~~~v~~G~---k 80 (310)
T KOG4499|consen 15 VLGEGPHWDVERQSLLYVDIEAGEVHRYDIE-QNK----VY-RAKIEGPPS-----AGFILPVEGGPQEFAVGCGS---K 80 (310)
T ss_pred cCCCCCceEEecceEEEEEeccCceehhhhh-hhh----eE-EEEEecCcc-----eeEEEEecCCCceEEEeecc---e
Confidence 34599999887 5688888989999999854 442 11 123333322 2333321 122455543322 1
Q ss_pred cceEEEEECCCCeEEEEeecC--CCccCCCCCCceeECCCCcEEEEeC---------CCCeEEEEccCCcEEEEecCCcc
Q 039428 127 YSALAAYDLSTWKRLFLTQLS--GKSEEKSTADDIAVDAEGNAYVTDV---------VSSKIWKVGVEGQLLSIIRSPLF 195 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~p~~~~vd~~G~lyV~d~---------~~~~I~~~d~~g~~~~~~~~~~~ 195 (335)
..+..||-..........+. .+....++.||..+||+|+.|+.-. ..+.+|++-++++...++..
T Consensus 81 -f~i~nwd~~~~~a~v~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~--- 156 (310)
T KOG4499|consen 81 -FVIVNWDGVSESAKVYRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNC--- 156 (310)
T ss_pred -EEEEEcccccceeeeeeeccccCchHHhcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehh---
Confidence 34555553322111111211 1122368999999999999988532 24666777666665443321
Q ss_pred ccccccccccccCeEEEccCC-eEEEEECCCCEEEEEe--CCCCc--eeEEEEeccCC--cCCCCCCeEEEcCCCcEEEE
Q 039428 196 TAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKID--IRKEE--EEVKLIELRGG--SSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 196 ~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d--~~~~~--~~~~~~~~~g~--~~~~~pdGia~d~~g~l~va 268 (335)
..-+|||++|.|. ..|+.|+.+..|..+| ..++. ....++++... .....||||++|.+|+||||
T Consensus 157 --------v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va 228 (310)
T KOG4499|consen 157 --------VGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVA 228 (310)
T ss_pred --------ccCCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEE
Confidence 2349999999888 8999999999995555 54441 12234443221 12356999999999999999
Q ss_pred ecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEeC---CeEEEEec
Q 039428 269 GNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVKD---GRVYLSHL 316 (335)
Q Consensus 269 ~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~~---g~lyV~~~ 316 (335)
.+ |+.+|+..+.. .++++.++..|. ...|+++|.+ +-+||+..
T Consensus 229 ~~--ng~~V~~~dp~--tGK~L~eiklPt-~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 229 TF--NGGTVQKVDPT--TGKILLEIKLPT-PQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred Ee--cCcEEEEECCC--CCcEEEEEEcCC-CceEEEEecCCCccEEEEEeh
Confidence 77 44555554432 345666666674 3458899963 67888443
No 11
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.63 E-value=2.9e-13 Score=125.84 Aligned_cols=235 Identities=10% Similarity=0.091 Sum_probs=144.7
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCC-CCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPD-EYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~-g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.|.+++++++|+.+|++ ..+++|..++..+ +.. .+. ....+.. ..|++++++|+++.+||++ ...
T Consensus 81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~----~~~--~~~~~~~--~~~~~~~~~p~g~~l~v~~--~~~--- 147 (330)
T PRK11028 81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIP----VAP--IQIIEGL--EGCHSANIDPDNRTLWVPC--LKE--- 147 (330)
T ss_pred CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCC----CCc--eeeccCC--CcccEeEeCCCCCEEEEee--CCC---
Confidence 58899999999988888 5578888887532 220 110 1111221 3688999998667888853 332
Q ss_pred ceEEEEECCC-CeEEE----EeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccC--CcEEEEecCCcccccc
Q 039428 128 SALAAYDLST-WKRLF----LTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVE--GQLLSIIRSPLFTAKE 199 (335)
Q Consensus 128 ~~v~~~d~~~-~~~~~----~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~--g~~~~~~~~~~~~~~~ 199 (335)
+.|.+||.++ +.+.. .... + ....|.+++++|+|+ +||++...+.|..++.+ +...+.+..-. ..|.
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~--~--~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~-~~p~ 222 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTT--V--EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLD-MMPA 222 (330)
T ss_pred CEEEEEEECCCCcccccCCCceec--C--CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEe-cCCC
Confidence 3599999875 33321 1111 1 145789999999985 89999988999888765 22222221100 0011
Q ss_pred ccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEE
Q 039428 200 WYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARL 277 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v 277 (335)
.......+.+|+++||| +||+++...+.|..|+.+........+.... . ...|.+++++++| .||+++.+++.+.+
T Consensus 223 ~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~-~-~~~p~~~~~~~dg~~l~va~~~~~~v~v 300 (330)
T PRK11028 223 DFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQP-T-ETQPRGFNIDHSGKYLIAAGQKSHHISV 300 (330)
T ss_pred cCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEe-c-cccCCceEECCCCCEEEEEEccCCcEEE
Confidence 00111235679999999 8999998899998888754321222222111 1 1359999999998 58888776788888
Q ss_pred EEcCCCcEEEEEeeeecCCCCCcceEEEE
Q 039428 278 VESSDGWETASVVAKFNGPTHRVATAATV 306 (335)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~p~~~~Pt~va~ 306 (335)
++.+......+....+. ....|.++++
T Consensus 301 ~~~~~~~g~l~~~~~~~--~g~~P~~~~~ 327 (330)
T PRK11028 301 YEIDGETGLLTELGRYA--VGQGPMWVSV 327 (330)
T ss_pred EEEcCCCCcEEEccccc--cCCCceEEEE
Confidence 87642211123334443 2456788876
No 12
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.62 E-value=7.9e-13 Score=122.88 Aligned_cols=245 Identities=11% Similarity=0.095 Sum_probs=150.3
Q ss_pred cceeeeEEcCCCCEEEEE-ecCCeEEEEECC-CCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 49 FLCETAKWDDVGRRFLVS-FLDGGVGQVLVP-DEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~~~~I~~~d~~-~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
-.|..++++|+++.+|+. ...+.|..|+.. ++. +. ...... .+..|.+|++++++..+|+++.. .
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~-----l~---~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~--~-- 101 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA-----LT---FAAESP-LPGSPTHISTDHQGRFLFSASYN--A-- 101 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-----eE---Eeeeec-CCCCceEEEECCCCCEEEEEEcC--C--
Confidence 357899999999988887 556778666532 233 22 111111 12368899999866678886422 2
Q ss_pred cceEEEEECCC-CeEE-EEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccc
Q 039428 127 YSALAAYDLST-WKRL-FLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 127 ~~~v~~~d~~~-~~~~-~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~ 202 (335)
+.|..||.+. +... ..... +....|..++++|+| .+||++...+.|.++|.+. +........... .+
T Consensus 102 -~~v~v~~~~~~g~~~~~~~~~----~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~----~~ 172 (330)
T PRK11028 102 -NCVSVSPLDKDGIPVAPIQII----EGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVT----TV 172 (330)
T ss_pred -CeEEEEEECCCCCCCCceeec----cCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCcee----cC
Confidence 4588888763 2221 11111 113568889999998 4889999999999998753 221100000001 11
Q ss_pred cccccCeEEEccCC-eEEEEECCCCEEEEEeCCC--Cc-eeEEEEeccCCc--CCCCCCeEEEcCCCc-EEEEecCCCeE
Q 039428 203 NVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRK--EE-EEVKLIELRGGS--SLSLGDGLALLSPTK-LVVAGNPYPSA 275 (335)
Q Consensus 203 ~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~--~~-~~~~~~~~~g~~--~~~~pdGia~d~~g~-l~va~~~~~~~ 275 (335)
...+|++++++||| ++|+++..+++|..++.+. ++ ...+.+...... ....|.+++++++|+ +|+++..++.+
T Consensus 173 ~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I 252 (330)
T PRK11028 173 EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLI 252 (330)
T ss_pred CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeE
Confidence 24569999999999 8999999899998888863 21 012222211100 012344689999985 88887666888
Q ss_pred EEEEcCCCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEecc
Q 039428 276 RLVESSDGWETASVVAKFNGPTHRVATAATVK--DGRVYLSHLL 317 (335)
Q Consensus 276 ~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~~~ 317 (335)
.+++.+.+....++...+. ....|..+++. +.+|||+...
T Consensus 253 ~v~~i~~~~~~~~~~~~~~--~~~~p~~~~~~~dg~~l~va~~~ 294 (330)
T PRK11028 253 SVFSVSEDGSVLSFEGHQP--TETQPRGFNIDHSGKYLIAAGQK 294 (330)
T ss_pred EEEEEeCCCCeEEEeEEEe--ccccCCceEECCCCCEEEEEEcc
Confidence 8887654322233444432 23456778884 6789997653
No 13
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.59 E-value=1.8e-12 Score=122.27 Aligned_cols=250 Identities=14% Similarity=0.129 Sum_probs=149.9
Q ss_pred CcceeeeEEcCCCCEEEEEec-----------C-CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeE
Q 039428 48 SFLCETAKWDDVGRRFLVSFL-----------D-GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRL 115 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~-----------~-~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l 115 (335)
-..|.+++||++|++|++... . .+|+++++.++.- +..+..++. .++ ..|+||++.+ +| |
T Consensus 13 ~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG---~~d~~~vfa-~~l--~~p~Gi~~~~-~G-l 84 (367)
T TIGR02604 13 LRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDG---KYDKSNVFA-EEL--SMVTGLAVAV-GG-V 84 (367)
T ss_pred cCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC---CcceeEEee-cCC--CCccceeEec-CC-E
Confidence 347999999999999988741 2 3899997543321 011111221 222 3789999985 67 9
Q ss_pred EEEEecCCCCccceEEEE-ECCCC-----eEE-EEeecCCC-ccCCCCCCceeECCCCcEEEEeCC--------------
Q 039428 116 LVAFTDVLGNKYSALAAY-DLSTW-----KRL-FLTQLSGK-SEEKSTADDIAVDAEGNAYVTDVV-------------- 173 (335)
Q Consensus 116 ~v~~~D~~~~~~~~v~~~-d~~~~-----~~~-~~~~~~~~-~~~~~~p~~~~vd~~G~lyV~d~~-------------- 173 (335)
||+ +. ..|+++ |.++. +.. ....+... ......++++++++||+|||++..
T Consensus 85 yV~--~~-----~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~ 157 (367)
T TIGR02604 85 YVA--TP-----PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDE 157 (367)
T ss_pred EEe--CC-----CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccC
Confidence 995 32 358888 43321 222 22223211 112467999999999999998762
Q ss_pred -----CCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCc---------ee
Q 039428 174 -----SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEE---------EE 239 (335)
Q Consensus 174 -----~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~---------~~ 239 (335)
.+.|+|++++|+..+.+.. .+.+|+|++++++|.||++|...+...++..-... +.
T Consensus 158 ~~~~~~g~i~r~~pdg~~~e~~a~----------G~rnp~Gl~~d~~G~l~~tdn~~~~~~~i~~~~~g~~~g~~~~~~~ 227 (367)
T TIGR02604 158 SRQGLGGGLFRYNPDGGKLRVVAH----------GFQNPYGHSVDSWGDVFFCDNDDPPLCRVTPVAEGGRNGYQSFNGR 227 (367)
T ss_pred cccccCceEEEEecCCCeEEEEec----------CcCCCccceECCCCCEEEEccCCCceeEEcccccccccCCCCCCCc
Confidence 2689999999877664432 24569999999999999999877666665532110 00
Q ss_pred -E---------EEEe-----------ccCCc--CCCCCCeEEEcC--------CCcEEEEecCCCeEEEEEcCC-Cc-EE
Q 039428 240 -V---------KLIE-----------LRGGS--SLSLGDGLALLS--------PTKLVVAGNPYPSARLVESSD-GW-ET 286 (335)
Q Consensus 240 -~---------~~~~-----------~~g~~--~~~~pdGia~d~--------~g~l~va~~~~~~~~v~~~~~-~~-~~ 286 (335)
. +... ..... ....|.|+++-. +|.+++++.....+..+.... +. ..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ap~G~~~y~g~~fp~~~~g~~fv~~~~~~~v~~~~l~~~g~~~~ 307 (367)
T TIGR02604 228 RYDHADRGADHEVPTGEWRQDDRGVETVGDVAGGGTAPCGIAFYRGDALPEEYRGLLLVGDAHGQLIVRYSLEPKGAGFK 307 (367)
T ss_pred ccccccccccccccccccccccccccccccccCCCccccEEEEeCCCcCCHHHCCCEEeeeccCCEEEEEEeecCCCccE
Confidence 0 0000 00000 012588998873 278999987556666666542 31 11
Q ss_pred EEEeeeecCC-CCCcceEEEEe-CCeEEEEeccCCCCC
Q 039428 287 ASVVAKFNGP-THRVATAATVK-DGRVYLSHLLGLGFP 322 (335)
Q Consensus 287 ~~~~~~~~~p-~~~~Pt~va~~-~g~lyV~~~~~~~~~ 322 (335)
.+...-+... ....|..+++. +|.|||+++...+..
T Consensus 308 ~~~~~~l~~~~~~~rp~dv~~~pDG~Lyv~d~~~~~i~ 345 (367)
T TIGR02604 308 GERPEFLRSNDTWFRPVNVTVGPDGALYVSDWYDRGIE 345 (367)
T ss_pred eecCceEecCCCcccccceeECCCCCEEEEEeccCccc
Confidence 2211112211 22357788886 999999997665443
No 14
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.59 E-value=8.8e-13 Score=123.42 Aligned_cols=252 Identities=17% Similarity=0.208 Sum_probs=157.6
Q ss_pred CCcceeeeEEcCCCCEEEEEe----cCCeEEEEEC-CC-CCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEe
Q 039428 47 PSFLCETAKWDDVGRRFLVSF----LDGGVGQVLV-PD-EYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFT 120 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~----~~~~I~~~d~-~~-g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~ 120 (335)
....|.-++++++++++|+.. ..+.|..++. .+ ++ ++ .+......+..|..+++++++..||+++
T Consensus 35 ~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~-----L~---~~~~~~~~g~~p~~i~~~~~g~~l~van- 105 (345)
T PF10282_consen 35 EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT-----LT---LLNSVPSGGSSPCHIAVDPDGRFLYVAN- 105 (345)
T ss_dssp ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTE-----EE---EEEEEEESSSCEEEEEECTTSSEEEEEE-
T ss_pred CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcce-----eE---EeeeeccCCCCcEEEEEecCCCEEEEEE-
Confidence 345688999999999999983 3567654442 22 33 22 2211111345788999998778889954
Q ss_pred cCCCCccceEEEEECCC-CeEEEE---eecC--CC---ccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcE--EE
Q 039428 121 DVLGNKYSALAAYDLST-WKRLFL---TQLS--GK---SEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQL--LS 188 (335)
Q Consensus 121 D~~~~~~~~v~~~d~~~-~~~~~~---~~~~--~~---~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~--~~ 188 (335)
..+ +.|.+|+.+. +.+... .... ++ .+....|..+.++|+|+ +||+|...++|++++.+... +.
T Consensus 106 -y~~---g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~ 181 (345)
T PF10282_consen 106 -YGG---GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLT 181 (345)
T ss_dssp -TTT---TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEE
T ss_pred -ccC---CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEE
Confidence 332 3577777764 544321 1110 11 12357888999999986 99999999999999876432 22
Q ss_pred EecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCce---eEEEEeccCCc--CCCCCCeEEEcCC
Q 039428 189 IIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEE---EVKLIELRGGS--SLSLGDGLALLSP 262 (335)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~---~~~~~~~~g~~--~~~~pdGia~d~~ 262 (335)
.. ..+. .+...+|..|+++||| ++||.+..++.|.+++.+...+ ..+.+...+.. ....|.+|++.++
T Consensus 182 ~~--~~~~----~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispd 255 (345)
T PF10282_consen 182 PV--DSIK----VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPD 255 (345)
T ss_dssp EE--EEEE----CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TT
T ss_pred Ee--eccc----cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecC
Confidence 11 1111 1245679999999999 9999999999999998883211 22333322111 1125889999999
Q ss_pred Cc-EEEEecCCCeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEEe--CCeEEEEeccCC
Q 039428 263 TK-LVVAGNPYPSARLVESSDG-WETASVVAKFNGPTHRVATAATVK--DGRVYLSHLLGL 319 (335)
Q Consensus 263 g~-l~va~~~~~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~~~~~ 319 (335)
|+ |||++.+++.+.+++.+.. .+ .+....+.. .+..|..++++ +..|||+...+.
T Consensus 256 g~~lyvsnr~~~sI~vf~~d~~~g~-l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~ 314 (345)
T PF10282_consen 256 GRFLYVSNRGSNSISVFDLDPATGT-LTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSN 314 (345)
T ss_dssp SSEEEEEECTTTEEEEEEECTTTTT-EEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTT
T ss_pred CCEEEEEeccCCEEEEEEEecCCCc-eEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCC
Confidence 85 8999888899999987422 22 122333321 25668899994 677998765543
No 15
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=1.3e-11 Score=116.97 Aligned_cols=206 Identities=23% Similarity=0.235 Sum_probs=148.8
Q ss_pred cceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 49 FLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..|.++++.+.++..|+. ...+.|.++|.. ... ++. .+. .+..|.+++++++++.+||++.....
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~-~~~---~~~---~~~----vG~~P~~~~~~~~~~~vYV~n~~~~~--- 139 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTA-TNT---VLG---SIP----VGLGPVGLAVDPDGKYVYVANAGNGN--- 139 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCc-ccc---eee---Eee----eccCCceEEECCCCCEEEEEecccCC---
Confidence 678999999999966666 777999999843 321 111 211 22478999999988899996542212
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
+.+.++|..++++...... ...|.+++++++|+ +|++++..++|..+|.++..... .... ...+.+..
T Consensus 140 ~~vsvid~~t~~~~~~~~v------G~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~----~~~~~~~~ 208 (381)
T COG3391 140 NTVSVIDAATNKVTATIPV------GNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG----SLVGVGTG 208 (381)
T ss_pred ceEEEEeCCCCeEEEEEec------CCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc----cccccCCC
Confidence 5699999999887744332 23678999999997 99999999999999988766542 1110 01234567
Q ss_pred cCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEEcCC
Q 039428 207 LNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 207 p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~~~~ 282 (335)
|.+++++++| ++|+++..+ +++.++|...+ .+.......+. + .|.+++++++| .+|+++...+.+.+++...
T Consensus 209 P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~--~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 209 PAGIAVDPDGNRVYVANDGSGSNNVLKIDTATG--NVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred CceEEECCCCCEEEEEeccCCCceEEEEeCCCc--eEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeCCC
Confidence 9999999999 799999988 79999999987 33333222212 4 69999999998 5778866557788887654
Q ss_pred C
Q 039428 283 G 283 (335)
Q Consensus 283 ~ 283 (335)
.
T Consensus 285 ~ 285 (381)
T COG3391 285 D 285 (381)
T ss_pred C
Confidence 3
No 16
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1.9e-10 Score=103.44 Aligned_cols=234 Identities=15% Similarity=0.193 Sum_probs=141.3
Q ss_pred CCCceeEEEcC----CCcceeeeEEcCCCCEEEEE-ecCCeEEEEEC-CCCCCCcceeeeeEEeecCCc------CCCCc
Q 039428 36 KPATHVYQYHS----PSFLCETAKWDDVGRRFLVS-FLDGGVGQVLV-PDEYSPGTVLEEVKLVKEDDV------VGNAT 103 (335)
Q Consensus 36 d~~~~~~~~~~----~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~-~~g~~~~~v~~~~~~~~~~~~------~~~~p 103 (335)
|+..+++++-. .+.-|.-+++|++|+.+|+. ...++|.++-. .+|.. ..++. .+...+. ....+
T Consensus 72 D~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l-~~~v~---~~~h~g~~p~~rQ~~~h~ 147 (346)
T COG2706 72 DPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL-QPVVQ---VVKHTGSGPHERQESPHV 147 (346)
T ss_pred cCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc-cccee---eeecCCCCCCccccCCcc
Confidence 44444555432 23346889999999988888 55677766642 22431 11111 2222221 00126
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEcc
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGV 182 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~ 182 (335)
+-..++|++..|++ .|-+.++ |..|+.+.|.+.......- ++...|..|+|.|+|. +|+....+++|-++.-
T Consensus 148 H~a~~tP~~~~l~v--~DLG~Dr---i~~y~~~dg~L~~~~~~~v--~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y 220 (346)
T COG2706 148 HSANFTPDGRYLVV--PDLGTDR---IFLYDLDDGKLTPADPAEV--KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEY 220 (346)
T ss_pred ceeeeCCCCCEEEE--eecCCce---EEEEEcccCcccccccccc--CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEE
Confidence 77778885556666 5766654 9999998776653322211 2367899999999996 9999998888877664
Q ss_pred CC--cEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEE
Q 039428 183 EG--QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLAL 259 (335)
Q Consensus 183 ~g--~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~ 259 (335)
+. ...+.+.. ....|+.-.+....-.|.+++|| +||++|.+.+.|..|..+...+.+..+.... ..-..|.++.+
T Consensus 221 ~~~~g~~~~lQ~-i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~-teg~~PR~F~i 298 (346)
T COG2706 221 NPAVGKFEELQT-IDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITP-TEGQFPRDFNI 298 (346)
T ss_pred cCCCceEEEeee-eccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEec-cCCcCCcccee
Confidence 43 22222221 11112211123456789999999 9999999999776554443211444443211 11245999999
Q ss_pred cCCCc-EEEEecCCCeEEEEEcCC
Q 039428 260 LSPTK-LVVAGNPYPSARLVESSD 282 (335)
Q Consensus 260 d~~g~-l~va~~~~~~~~v~~~~~ 282 (335)
++.|+ |++++..++.+.|++-+.
T Consensus 299 ~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 299 NPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CCCCCEEEEEccCCCcEEEEEEcC
Confidence 99986 555566667788877554
No 17
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=4.4e-11 Score=113.31 Aligned_cols=228 Identities=16% Similarity=0.146 Sum_probs=153.8
Q ss_pred cceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 49 FLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..|.++++.++|...|+. ...+.+..++.. ... .. .+. ..+ +..|+|+++++.+.++|+.+.+.
T Consensus 31 ~~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~----~~--~~~-~~g--~~~p~~i~v~~~~~~vyv~~~~~----- 95 (381)
T COG3391 31 RGPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNT----VT--QSL-SVG--GVYPAGVAVNPAGNKVYVTTGDS----- 95 (381)
T ss_pred CCCceeEEcCccCEEEEEeecCceeeecccc-cce----ee--eec-cCC--CccccceeeCCCCCeEEEecCCC-----
Confidence 379999999999555555 555678888643 331 11 111 122 14789999998778899976543
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeC--CCCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDV--VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~--~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
+.|.++|.++......... ...|.+++++++| .+||++. .++.|+++|.++..+... .+ ..
T Consensus 96 ~~v~vid~~~~~~~~~~~v------G~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~---~~-------vG 159 (381)
T COG3391 96 NTVSVIDTATNTVLGSIPV------GLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT---IP-------VG 159 (381)
T ss_pred CeEEEEcCcccceeeEeee------ccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE---Ee-------cC
Confidence 4699999777665544333 2488999999997 7999999 579999999986654421 11 22
Q ss_pred cccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccC--CcCCCCCCeEEEcCCCc-EEEEecCC--CeEEEE
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRG--GSSLSLGDGLALLSPTK-LVVAGNPY--PSARLV 278 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g--~~~~~~pdGia~d~~g~-l~va~~~~--~~~~v~ 278 (335)
..|.|++++|+| .+|+++..++.|..+|.++. .+.. ...+ -.....|.+++++++|. +||++..+ +.+.++
T Consensus 160 ~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~--~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~i 236 (381)
T COG3391 160 NTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGN--SVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKI 236 (381)
T ss_pred CCcceEEECCCCCeEEEEecCCCeEEEEeCCCc--ceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEE
Confidence 357999999999 79999999999999998876 2321 1100 11236799999999985 99997754 466666
Q ss_pred EcCCCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEE
Q 039428 279 ESSDGWETASVVAKFNGPTHRVATAATVK--DGRVYLS 314 (335)
Q Consensus 279 ~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~ 314 (335)
+...+..... .+....+ .|.++++. +..+||.
T Consensus 237 d~~~~~v~~~---~~~~~~~-~~~~v~~~p~g~~~yv~ 270 (381)
T COG3391 237 DTATGNVTAT---DLPVGSG-APRGVAVDPAGKAAYVA 270 (381)
T ss_pred eCCCceEEEe---ccccccC-CCCceeECCCCCEEEEE
Confidence 6654422111 1212223 56677773 6667775
No 18
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.43 E-value=2.5e-11 Score=110.22 Aligned_cols=208 Identities=19% Similarity=0.258 Sum_probs=129.7
Q ss_pred CcceEEEeCCCCeEEEEEecCCC---------CccceEEEEECCCCeEEEEeecCCCc-cCCCCCCceeECCC------C
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLG---------NKYSALAAYDLSTWKRLFLTQLSGKS-EEKSTADDIAVDAE------G 165 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~---------~~~~~v~~~d~~~~~~~~~~~~~~~~-~~~~~p~~~~vd~~------G 165 (335)
+..++.+|+ .|+|||. |.+. ....+|+.||+++++++..+.++... .+.++.++++||.. +
T Consensus 2 sV~~v~iD~-~~rLWVl--D~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~ 78 (287)
T PF03022_consen 2 SVQRVQIDE-CGRLWVL--DSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDG 78 (287)
T ss_dssp -EEEEEE-T-TSEEEEE--E-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SE
T ss_pred cccEEEEcC-CCCEEEE--eCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcce
Confidence 456899995 9999995 5441 11257999999999988777775322 23678999999973 4
Q ss_pred cEEEEeCCCCeEEEEccCCc-EEEEecCCccc-ccc---------ccccccccCeEEEcc---CC-eEEEEECCCCEEEE
Q 039428 166 NAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFT-AKE---------WYKNVFGLNGIVYHP---DG-FLIVIHMCSGNLFK 230 (335)
Q Consensus 166 ~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~-~~~---------~~~~~~~p~Gia~~~---dg-~Lyvad~~~~~v~~ 230 (335)
.+|++|...+.|.++|.... ..+++.. .+. .|. .-....+..||++++ +| +||+....+.++|+
T Consensus 79 ~aYItD~~~~glIV~dl~~~~s~Rv~~~-~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~ 157 (287)
T PF03022_consen 79 FAYITDSGGPGLIVYDLATGKSWRVLHN-SFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYR 157 (287)
T ss_dssp EEEEEETTTCEEEEEETTTTEEEEEETC-GCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEE
T ss_pred EEEEeCCCcCcEEEEEccCCcEEEEecC-CcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEE
Confidence 69999999999999998754 4444432 222 111 001112478889977 66 89999999999999
Q ss_pred EeCCCC---c----e----eEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCC-C
Q 039428 231 IDIRKE---E----E----EVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPT-H 298 (335)
Q Consensus 231 ~d~~~~---~----~----~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~-~ 298 (335)
++.+-- . . .++.+ |++ ....+|+++|++|+||++.-..++|........+......--...+. .
T Consensus 158 v~T~~L~~~~~~~~~~~~~~v~~l---G~k-~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l 233 (287)
T PF03022_consen 158 VPTSVLRDPSLSDAQALASQVQDL---GDK-GSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTL 233 (287)
T ss_dssp EEHHHHCSTT--HHH-HHHT-EEE---EE----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-G
T ss_pred EEHHHhhCccccccccccccceec---ccc-CCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCcee
Confidence 987531 0 0 12222 211 12368999999999999977667887777654332111111122455 7
Q ss_pred CcceEEEEeC---CeEEE-Eecc
Q 039428 299 RVATAATVKD---GRVYL-SHLL 317 (335)
Q Consensus 299 ~~Pt~va~~~---g~lyV-~~~~ 317 (335)
.+|.++.++. |+||| ++++
T Consensus 234 ~~pd~~~i~~~~~g~L~v~snrl 256 (287)
T PF03022_consen 234 QWPDGLKIDPEGDGYLWVLSNRL 256 (287)
T ss_dssp SSEEEEEE-T--TS-EEEEE-S-
T ss_pred eccceeeeccccCceEEEEECcc
Confidence 8899999965 99998 5544
No 19
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=7.1e-11 Score=107.80 Aligned_cols=199 Identities=17% Similarity=0.120 Sum_probs=125.4
Q ss_pred CCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEe-ecCCcCCCCcceEEEeCCCCeEEEEEec----
Q 039428 47 PSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLV-KEDDVVGNATMGIAVDRPRNRLLVAFTD---- 121 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~-~~~~~~~~~p~Gi~~d~~~g~l~v~~~D---- 121 (335)
+...+.+..++.+|.+ +++.....++..+ .+.. ... +. ..++...++++...+++ +|++|+....
T Consensus 65 p~~~~~~~~~d~~g~L-v~~~~g~~~~~~~--~~~~----~t~--~~~~~~~~~~~r~ND~~v~p-dG~~wfgt~~~~~~ 134 (307)
T COG3386 65 PGGFSSGALIDAGGRL-IACEHGVRLLDPD--TGGK----ITL--LAEPEDGLPLNRPNDGVVDP-DGRIWFGDMGYFDL 134 (307)
T ss_pred CCCcccceeecCCCeE-EEEccccEEEecc--CCce----eEE--eccccCCCCcCCCCceeEcC-CCCEEEeCCCcccc
Confidence 3456778888877754 4442233333333 2331 111 21 12333347899999997 8999995433
Q ss_pred -CCC-CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEEecCC-cccc
Q 039428 122 -VLG-NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSIIRSP-LFTA 197 (335)
Q Consensus 122 -~~~-~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~~~~~-~~~~ 197 (335)
... .....|+++|+.++......+ ....||+|+++||| .+|++|+..++|++++.+-......+.. .+..
T Consensus 135 ~~~~~~~~G~lyr~~p~g~~~~l~~~------~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~ 208 (307)
T COG3386 135 GKSEERPTGSLYRVDPDGGVVRLLDD------DLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDF 208 (307)
T ss_pred CccccCCcceEEEEcCCCCEEEeecC------cEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEc
Confidence 111 112579999996554443322 16789999999999 6999999999999998762110000000 0000
Q ss_pred ccccccccccCeEEEccCCeEEEEECCC-CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC--CcEEEEec
Q 039428 198 KEWYKNVFGLNGIVYHPDGFLIVIHMCS-GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP--TKLVVAGN 270 (335)
Q Consensus 198 ~~~~~~~~~p~Gia~~~dg~Lyvad~~~-~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~--g~l~va~~ 270 (335)
......|.|+++|.+|+||++...+ ++|.++++++. ....+.++. ..|..+++-.. ..|||+..
T Consensus 209 ---~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pdG~--l~~~i~lP~----~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 209 ---DEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPDGK--LLGEIKLPV----KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ---cCCCCCCCceEEeCCCCEEEecccCCceEEEECCCCc--EEEEEECCC----CCCccceEeCCCcCEEEEEec
Confidence 0012459999999999999654444 49999999966 777777653 34778888754 57999865
No 20
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.41 E-value=6.2e-10 Score=103.12 Aligned_cols=260 Identities=13% Similarity=0.058 Sum_probs=144.5
Q ss_pred hhhhhcCCCceeE-EEcCCCcceeeeEEcCCCCEEEEE-e---------cCCeEEEEECCCCCCCcceeeeeEEeecCCc
Q 039428 30 LAIAMAKPATHVY-QYHSPSFLCETAKWDDVGRRFLVS-F---------LDGGVGQVLVPDEYSPGTVLEEVKLVKEDDV 98 (335)
Q Consensus 30 ~~~~~~d~~~~~~-~~~~~~~~pegia~d~~g~~~~~~-~---------~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~ 98 (335)
+.+.+.|..+.++ ..-..+..|.++ ++++|+.+|++ . .+..|.++|..+.+ ++.++..-..|.+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~----~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL----PIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc----EEeEEccCCCchh
Confidence 4566666655442 223346689996 99999999988 6 57899999976554 2333222122221
Q ss_pred -CCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeE
Q 039428 99 -VGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKI 177 (335)
Q Consensus 99 -~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I 177 (335)
.+..+..+++++++..|||.+.+.. +.|.++|.++++++..++.+. ...-....++.++..+--..-.-
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~----~~V~VvD~~~~kvv~ei~vp~------~~~vy~t~e~~~~~~~~Dg~~~~ 171 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPS----PAVGVVDLEGKAFVRMMDVPD------CYHIFPTANDTFFMHCRDGSLAK 171 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCC----CEEEEEECCCCcEEEEEeCCC------CcEEEEecCCccEEEeecCceEE
Confidence 2346779999986678999764422 469999999999886665522 11112222222222221111122
Q ss_pred EEEccCCcEEEEecCCccccccccccccccCeEEEcc-CC-eEEEEECCCCEEEEEeCCCCc-eeEEEEeccC--Cc-CC
Q 039428 178 WKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHP-DG-FLIVIHMCSGNLFKIDIRKEE-EEVKLIELRG--GS-SL 251 (335)
Q Consensus 178 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~-dg-~Lyvad~~~~~v~~~d~~~~~-~~~~~~~~~g--~~-~~ 251 (335)
+.++.+|+... -..+.|.. +..+-+..| .+.+ || .+|++.. |+|+.+|..+.+ .....+.... .. .-
T Consensus 172 v~~d~~g~~~~-~~~~vf~~-~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~ 244 (352)
T TIGR02658 172 VGYGTKGNPKI-KPTEVFHP-EDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADG 244 (352)
T ss_pred EEecCCCceEE-eeeeeecC-CccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccc
Confidence 23334444221 00011111 011122334 5566 77 7788766 999999976652 0112222111 00 00
Q ss_pred CCCCe---EEEcCCC-cEEEEe-c--------CCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe--CC-eEEEEe
Q 039428 252 SLGDG---LALLSPT-KLVVAG-N--------PYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK--DG-RVYLSH 315 (335)
Q Consensus 252 ~~pdG---ia~d~~g-~l~va~-~--------~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g-~lyV~~ 315 (335)
-.|.| ++++++| ++||+. . +++.+++++...+ ++..++. .+..|.++++. +. .||+++
T Consensus 245 wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~----kvi~~i~--vG~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 245 WRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG----KRLRKIE--LGHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred cCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC----eEEEEEe--CCCceeeEEECCCCCeEEEEeC
Confidence 13555 9999886 799952 2 2267899887543 4455543 34457889994 56 788866
Q ss_pred cc
Q 039428 316 LL 317 (335)
Q Consensus 316 ~~ 317 (335)
..
T Consensus 319 ~~ 320 (352)
T TIGR02658 319 TG 320 (352)
T ss_pred CC
Confidence 43
No 21
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.39 E-value=9.9e-10 Score=99.39 Aligned_cols=220 Identities=15% Similarity=0.142 Sum_probs=139.4
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.+..++++++|+.+|++ ..+++|..+|..+.+ .+. .+ +. +..+.++++++ ++.++++..+. . .
T Consensus 74 ~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~----~~~---~~--~~--~~~~~~~~~~~-dg~~l~~~~~~-~---~ 137 (300)
T TIGR03866 74 DPELFALHPNGKILYIANEDDNLVTVIDIETRK----VLA---EI--PV--GVEPEGMAVSP-DGKIVVNTSET-T---N 137 (300)
T ss_pred CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe----EEe---Ee--eC--CCCcceEEECC-CCCEEEEEecC-C---C
Confidence 46788999999988777 557899999964332 111 11 11 12568999997 56555543322 1 2
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcE-EEEecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~~~~~~~~~ 206 (335)
.+..+|.++++....... ...|..++++++|. +|++....+.|+.+|.+... ...+. +..++..+....
T Consensus 138 ~~~~~d~~~~~~~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~---~~~~~~~~~~~~ 208 (300)
T TIGR03866 138 MAHFIDTKTYEIVDNVLV------DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT---FEIPGVHPEAVQ 208 (300)
T ss_pred eEEEEeCCCCeEEEEEEc------CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee---ecccccccccCC
Confidence 467789887766532221 23567899999986 66776667899999987543 22221 111111112234
Q ss_pred cCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcCCCc
Q 039428 207 LNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESSDGW 284 (335)
Q Consensus 207 p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~~~~ 284 (335)
|.+++++++| .+|++...+++|.++|.+..+ ....+. .+ ..+.++++.++|. ||+++..++.+.+++...+
T Consensus 209 ~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~-~~~~~~-~~----~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~- 281 (300)
T TIGR03866 209 PVGIKLTKDGKTAFVALGPANRVAVVDAKTYE-VLDYLL-VG----QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL- 281 (300)
T ss_pred ccceEECCCCCEEEEEcCCCCeEEEEECCCCc-EEEEEE-eC----CCcceEEECCCCCEEEEEcCCCCeEEEEECCCC-
Confidence 7899999999 778888888899999998763 333332 22 2488999999986 5555444577888887654
Q ss_pred EEEEEeeeecCCCCCcceEEEE
Q 039428 285 ETASVVAKFNGPTHRVATAATV 306 (335)
Q Consensus 285 ~~~~~~~~~~~p~~~~Pt~va~ 306 (335)
+.+.++. .+..|.++++
T Consensus 282 ---~~~~~~~--~~~~~~~~~~ 298 (300)
T TIGR03866 282 ---KVIKSIK--VGRLPWGVVV 298 (300)
T ss_pred ---cEEEEEE--cccccceeEe
Confidence 3333332 2344677765
No 22
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.36 E-value=4.1e-09 Score=95.33 Aligned_cols=227 Identities=15% Similarity=0.098 Sum_probs=139.9
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.|.+++|+++|+.+|++ ..++.|..+|..+++ ++. .+ +. +..+..++++++++.+|+++.+. .
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~----~~~---~~--~~--~~~~~~~~~~~~g~~l~~~~~~~-----~ 95 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE----VIG---TL--PS--GPDPELFALHPNGKILYIANEDD-----N 95 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCCCc----EEE---ec--cC--CCCccEEEECCCCCEEEEEcCCC-----C
Confidence 47889999999977665 667899999965443 111 12 11 12356788988556677753221 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-CCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
.|..||+++++....... ...+++++++++|.++++... ...++.+|.++..... ... ....|
T Consensus 96 ~l~~~d~~~~~~~~~~~~------~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~----~~~------~~~~~ 159 (300)
T TIGR03866 96 LVTVIDIETRKVLAEIPV------GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVD----NVL------VDQRP 159 (300)
T ss_pred eEEEEECCCCeEEeEeeC------CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEE----EEE------cCCCc
Confidence 599999988765533322 235788999999986665444 3456677876433221 000 11247
Q ss_pred CeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEecc--CCc-CCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcCC
Q 039428 208 NGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELR--GGS-SLSLGDGLALLSPTK-LVVAGNPYPSARLVESSD 282 (335)
Q Consensus 208 ~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~--g~~-~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~~ 282 (335)
+.++++++| .||++....++|..+|+...+ ....+... +.. ....|.+++++++|+ +|++....+.+.+++...
T Consensus 160 ~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~ 238 (300)
T TIGR03866 160 RFAEFTADGKELWVSSEIGGTVSVIDVATRK-VIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKT 238 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCEEEEEEcCcce-eeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 889999999 677776678899999998763 33433321 100 012477899999986 577754446788887654
Q ss_pred CcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEe
Q 039428 283 GWETASVVAKFNGPTHRVATAATVK--DGRVYLSH 315 (335)
Q Consensus 283 ~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~ 315 (335)
+ +. ...+. ....|.++++. +..||++.
T Consensus 239 ~-~~---~~~~~--~~~~~~~~~~~~~g~~l~~~~ 267 (300)
T TIGR03866 239 Y-EV---LDYLL--VGQRVWQLAFTPDEKYLLTTN 267 (300)
T ss_pred C-cE---EEEEE--eCCCcceEEECCCCCEEEEEc
Confidence 3 22 22211 12235677773 55677653
No 23
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=99.28 E-value=4.4e-09 Score=97.82 Aligned_cols=253 Identities=17% Similarity=0.220 Sum_probs=143.4
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC---CCCcceEEEeC---CCCeEEEEEecC-
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV---GNATMGIAVDR---PRNRLLVAFTDV- 122 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~---~~~p~Gi~~d~---~~g~l~v~~~D~- 122 (335)
.|.++++.|+|++|+... .|+|++++ .++... . .+...+... .....||+++| .++.||++....
T Consensus 3 ~P~~~a~~pdG~l~v~e~-~G~i~~~~-~~g~~~----~--~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~ 74 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAER-SGRIWVVD-KDGSLK----T--PVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNAD 74 (331)
T ss_dssp SEEEEEEETTSCEEEEET-TTEEEEEE-TTTEEC----E--EEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-
T ss_pred CceEEEEeCCCcEEEEeC-CceEEEEe-CCCcCc----c--eecccccccccccCCcccceeccccCCCCEEEEEEEccc
Confidence 589999999998766554 99999998 455410 1 122222211 14579999997 258999976521
Q ss_pred --CCCccceEEEEECCCC--eE---E-EEeecCCCccCCCCCCceeECCCCcEEEEeC-------------CCCeEEEEc
Q 039428 123 --LGNKYSALAAYDLSTW--KR---L-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-------------VSSKIWKVG 181 (335)
Q Consensus 123 --~~~~~~~v~~~d~~~~--~~---~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-------------~~~~I~~~d 181 (335)
......+|.++..+.+ .+ . .....+......+.-..|+++|||.|||+-. ..+.|+|++
T Consensus 75 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~ 154 (331)
T PF07995_consen 75 EDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRID 154 (331)
T ss_dssp TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEE
T ss_pred CCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEec
Confidence 1122256888776544 11 1 1112211112245567799999999999731 368999999
Q ss_pred cCCcEEEEecCCcccc----cc-ccccccccCeEEEccC-CeEEEEECCC---CEEEEEeCCCC------c------ee-
Q 039428 182 VEGQLLSIIRSPLFTA----KE-WYKNVFGLNGIVYHPD-GFLIVIHMCS---GNLFKIDIRKE------E------EE- 239 (335)
Q Consensus 182 ~~g~~~~~~~~~~~~~----~~-~~~~~~~p~Gia~~~d-g~Lyvad~~~---~~v~~~d~~~~------~------~~- 239 (335)
++|+... .++.+.. .+ ....+.+|.+++++|. |.||++|.+. ..|.++..... . +.
T Consensus 155 ~dG~~p~--dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~ 232 (331)
T PF07995_consen 155 PDGSIPA--DNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPP 232 (331)
T ss_dssp TTSSB-T--TSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-
T ss_pred ccCcCCC--CCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCc
Confidence 9987422 1111110 01 2235667999999998 8999999764 46777754332 0 00
Q ss_pred -----------EEEEeccCCcCCCCCCeEEEcC-------CCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcc
Q 039428 240 -----------VKLIELRGGSSLSLGDGLALLS-------PTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVA 301 (335)
Q Consensus 240 -----------~~~~~~~g~~~~~~pdGia~d~-------~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~P 301 (335)
.-.+.... -..|.|+.+-. +|.+++++.+...++.+..+++....+ ...+-......|
T Consensus 233 ~~~~~~~~~~~~P~~~~~~---~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~r~ 308 (331)
T PF07995_consen 233 IGDAPSCPGFVPPVFAYPP---HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTE-EEEFLGGFGGRP 308 (331)
T ss_dssp ECTGSS-TTS---SEEETT---T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEE-EEEECTTSSS-E
T ss_pred cccccCCCCcCccceeecC---ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccc-eEEccccCCCCc
Confidence 00001111 13578888763 367999988667888888765533222 222222333357
Q ss_pred eEEEEe-CCeEEEEec
Q 039428 302 TAATVK-DGRVYLSHL 316 (335)
Q Consensus 302 t~va~~-~g~lyV~~~ 316 (335)
.++++. +|+|||++.
T Consensus 309 ~~v~~~pDG~Lyv~~d 324 (331)
T PF07995_consen 309 RDVAQGPDGALYVSDD 324 (331)
T ss_dssp EEEEEETTSEEEEEE-
T ss_pred eEEEEcCCCeEEEEEC
Confidence 899997 999999765
No 24
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.27 E-value=1.8e-08 Score=90.82 Aligned_cols=247 Identities=14% Similarity=0.184 Sum_probs=149.7
Q ss_pred cceeeeEEcCCCCEEEEE-ec--CCe--EEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 49 FLCETAKWDDVGRRFLVS-FL--DGG--VGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~--~~~--I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
-.|.=++|+++++.+|+. .. .+. -++||+.+|+ ++ ++......+..|.-+++|+++..||++ ...
T Consensus 40 ~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~-----Lt---~ln~~~~~g~~p~yvsvd~~g~~vf~A--nY~ 109 (346)
T COG2706 40 GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR-----LT---FLNRQTLPGSPPCYVSVDEDGRFVFVA--NYH 109 (346)
T ss_pred CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe-----EE---EeeccccCCCCCeEEEECCCCCEEEEE--Ecc
Confidence 357889999999888887 43 354 4677754465 22 443333344567899999743456664 333
Q ss_pred CCccceEEEEECCC-CeEEEE----eec-CC--CccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCc
Q 039428 124 GNKYSALAAYDLST-WKRLFL----TQL-SG--KSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPL 194 (335)
Q Consensus 124 ~~~~~~v~~~d~~~-~~~~~~----~~~-~~--~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~ 194 (335)
. +.|.++-.+. |.+... .+. .+ +.+....+.-..++|+|+ ++++|-...+|+.++.+...+.... +.
T Consensus 110 ~---g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~-~~ 185 (346)
T COG2706 110 S---GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD-PA 185 (346)
T ss_pred C---ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc-cc
Confidence 2 3466655532 433211 111 11 112234467788999995 8889999999999887633322111 11
Q ss_pred cccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCc---eeEEEEeccCCcCC---CCCCeEEEcCCCc-EE
Q 039428 195 FTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEE---EEVKLIELRGGSSL---SLGDGLALLSPTK-LV 266 (335)
Q Consensus 195 ~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~---~~~~~~~~~g~~~~---~~pdGia~d~~g~-l~ 266 (335)
+.+ .+.+|.-|+|.|+| ..|+...-+++|.++..+... ..++.+..-... + ...-.|.+.++|+ ||
T Consensus 186 ~v~-----~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~d-F~g~~~~aaIhis~dGrFLY 259 (346)
T COG2706 186 EVK-----PGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPED-FTGTNWAAAIHISPDGRFLY 259 (346)
T ss_pred ccC-----CCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccc-cCCCCceeEEEECCCCCEEE
Confidence 112 35789999999999 889999999999888887741 134444321111 2 2234567789996 88
Q ss_pred EEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe-CC-eEEEEec
Q 039428 267 VAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK-DG-RVYLSHL 316 (335)
Q Consensus 267 va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g-~lyV~~~ 316 (335)
++|.+.++++++..++.....+..+... -.++.|-...+. +| -|+++..
T Consensus 260 asNRg~dsI~~f~V~~~~g~L~~~~~~~-teg~~PR~F~i~~~g~~Liaa~q 310 (346)
T COG2706 260 ASNRGHDSIAVFSVDPDGGKLELVGITP-TEGQFPRDFNINPSGRFLIAANQ 310 (346)
T ss_pred EecCCCCeEEEEEEcCCCCEEEEEEEec-cCCcCCccceeCCCCCEEEEEcc
Confidence 8888889999988765422233333321 134556677774 44 4555443
No 25
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=99.24 E-value=1e-09 Score=103.63 Aligned_cols=162 Identities=21% Similarity=0.270 Sum_probs=104.6
Q ss_pred EeecCCcCCCCcceEEEeCCCCeEEEEEecCC-------CCccceEEEEECCC--CeEEEEeecCCCccCCCCCCceeEC
Q 039428 92 LVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL-------GNKYSALAAYDLST--WKRLFLTQLSGKSEEKSTADDIAVD 162 (335)
Q Consensus 92 ~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~-------~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~p~~~~vd 162 (335)
+.+.|.+ ..|.+|++|+ +|+|||+..... .....+|++++... |+......+ .++...|+++++.
T Consensus 7 ~A~~p~~--~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vf---a~~l~~p~Gi~~~ 80 (367)
T TIGR02604 7 FAAEPLL--RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVF---AEELSMVTGLAVA 80 (367)
T ss_pred EECCCcc--CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEe---ecCCCCccceeEe
Confidence 4444544 3789999996 899999632110 01112688887542 222111111 1226789999999
Q ss_pred CCCcEEEEeCCCCeEEEE-ccCC------cEEEEecCCccccccccccccccCeEEEccCCeEEEEECC-----------
Q 039428 163 AEGNAYVTDVVSSKIWKV-GVEG------QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC----------- 224 (335)
Q Consensus 163 ~~G~lyV~d~~~~~I~~~-d~~g------~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~----------- 224 (335)
++| +||++ ...|+++ +.++ +...++. .+.... ......++++++.|||+||+++..
T Consensus 81 ~~G-lyV~~--~~~i~~~~d~~gdg~ad~~~~~l~~--~~~~~~-~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~ 154 (367)
T TIGR02604 81 VGG-VYVAT--PPDILFLRDKDGDDKADGEREVLLS--GFGGQI-NNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGT 154 (367)
T ss_pred cCC-EEEeC--CCeEEEEeCCCCCCCCCCccEEEEE--ccCCCC-CcccccccCceECCCCCEEEecccCCCceeccCCC
Confidence 999 99986 4479988 4443 2222221 121100 001345999999999999998762
Q ss_pred --------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC
Q 039428 225 --------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP 271 (335)
Q Consensus 225 --------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~ 271 (335)
.+.|+|+++++. ..+.+.. | +..|.|++++++|++|++++.
T Consensus 155 ~~~~~~~~~g~i~r~~pdg~--~~e~~a~-G---~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 155 SDESRQGLGGGLFRYNPDGG--KLRVVAH-G---FQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred ccCcccccCceEEEEecCCC--eEEEEec-C---cCCCccceECCCCCEEEEccC
Confidence 267999999987 5666652 3 577999999999999999763
No 26
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.16 E-value=4.5e-08 Score=92.26 Aligned_cols=262 Identities=20% Similarity=0.215 Sum_probs=142.6
Q ss_pred hhhhhhhhhcCCCceeE--EEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCc
Q 039428 26 ISIELAIAMAKPATHVY--QYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNAT 103 (335)
Q Consensus 26 ~~~~~~~~~~d~~~~~~--~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p 103 (335)
....+.+++.|..+.++ .++.....+.+++++++|+.+|+...++.|.++|..+.+ ++.+ +. .|..|
T Consensus 12 ~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~----~v~~---i~----~G~~~ 80 (369)
T PF02239_consen 12 ERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK----VVAT---IK----VGGNP 80 (369)
T ss_dssp EGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS----EEEE---EE-----SSEE
T ss_pred ecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc----EEEE---Ee----cCCCc
Confidence 34556677777765432 233333346778899999988888778999999976554 3332 21 23478
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCcc--CCCCCCceeECCCCcEE-EEeCCCCeEEEE
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSE--EKSTADDIAVDAEGNAY-VTDVVSSKIWKV 180 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~p~~~~vd~~G~ly-V~d~~~~~I~~~ 180 (335)
.|+++++++..+|+++... +.+.++|.++.+++..++...... ...++.++...+....| ++-...++|+.+
T Consensus 81 ~~i~~s~DG~~~~v~n~~~-----~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vV 155 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEP-----GTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVV 155 (369)
T ss_dssp EEEEE--TTTEEEEEEEET-----TEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEE
T ss_pred ceEEEcCCCCEEEEEecCC-----CceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEE
Confidence 9999998556677765433 469999999988775554321110 13455567777777645 455678999999
Q ss_pred ccCC-cEE--EEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEec-----------
Q 039428 181 GVEG-QLL--SIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIEL----------- 245 (335)
Q Consensus 181 d~~g-~~~--~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~----------- 245 (335)
|... +.. +.+. ....|++..++|+| +++++...+++|..+|....+ .+..++.
T Consensus 156 dy~d~~~~~~~~i~-----------~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k-~v~~i~~g~~p~~~~~~~ 223 (369)
T PF02239_consen 156 DYSDPKNLKVTTIK-----------VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGK-LVALIDTGKKPHPGPGAN 223 (369)
T ss_dssp ETTTSSCEEEEEEE-------------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTE-EEEEEE-SSSBEETTEEE
T ss_pred Eeccccccceeeec-----------ccccccccccCcccceeeecccccceeEEEeeccce-EEEEeecccccccccccc
Confidence 9543 222 1111 12348899999999 778887777888888877652 1111110
Q ss_pred ------------c----------CCc-----------------CCCCCCeEEEcCCC-cEEEE---ecCCCeEEEEEcCC
Q 039428 246 ------------R----------GGS-----------------SLSLGDGLALLSPT-KLVVA---GNPYPSARLVESSD 282 (335)
Q Consensus 246 ------------~----------g~~-----------------~~~~pdGia~d~~g-~l~va---~~~~~~~~v~~~~~ 282 (335)
. |.. ..+.|-.+...|++ .+||. +...+.+.|++..+
T Consensus 224 ~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~t 303 (369)
T PF02239_consen 224 FPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKT 303 (369)
T ss_dssp EEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCG
T ss_pred ccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcC
Confidence 0 000 01234566667776 57777 33345678887654
Q ss_pred CcEEEEEeeeec-CCCCCcceEEEEe--CCeEEEEeccCCC
Q 039428 283 GWETASVVAKFN-GPTHRVATAATVK--DGRVYLSHLLGLG 320 (335)
Q Consensus 283 ~~~~~~~~~~~~-~p~~~~Pt~va~~--~g~lyV~~~~~~~ 320 (335)
- ++...+. ++. ..+..+.+. +.++||+.+...|
T Consensus 304 l----~~~~~i~~~~~-~~~~h~ef~~dG~~v~vS~~~~~~ 339 (369)
T PF02239_consen 304 L----KVVKTITPGPG-KRVVHMEFNPDGKEVWVSVWDGNG 339 (369)
T ss_dssp T----EEEE-HHHHHT---EEEEEE-TTSSEEEEEEE--TT
T ss_pred c----ceeEEEeccCC-CcEeccEECCCCCEEEEEEecCCC
Confidence 3 3333332 111 114456663 7789998887664
No 27
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=99.14 E-value=4.5e-08 Score=99.88 Aligned_cols=244 Identities=17% Similarity=0.166 Sum_probs=154.4
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
+.|-.+|..+||.+|+-+ -+-|.|+. ++|+. .. .+......-..-.=|+++|-+|.||| .|...+
T Consensus 365 ~aPvala~a~DGSl~VGD--fNyIRRI~-~dg~v----~t---Il~L~~t~~sh~Yy~AvsPvdgtlyv--Sdp~s~--- 429 (1899)
T KOG4659|consen 365 FAPVALAYAPDGSLIVGD--FNYIRRIS-QDGQV----ST---ILTLGLTDTSHSYYIAVSPVDGTLYV--SDPLSK--- 429 (1899)
T ss_pred eceeeEEEcCCCcEEEcc--chheeeec-CCCce----EE---EEEecCCCccceeEEEecCcCceEEe--cCCCcc---
Confidence 368899999999988775 46788996 56772 22 22211100013467999998999999 676544
Q ss_pred eEEEEEC-CC-----C-eEEEE---eecCCC----------ccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEE
Q 039428 129 ALAAYDL-ST-----W-KRLFL---TQLSGK----------SEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLS 188 (335)
Q Consensus 129 ~v~~~d~-~~-----~-~~~~~---~~~~~~----------~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~ 188 (335)
+|+++.- +. + +++.+ .+++.. .....+|.|++||.+|++|++|.. +|.++|.+|-...
T Consensus 430 qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk~g~lYfaD~t--~IR~iD~~giIst 507 (1899)
T KOG4659|consen 430 QVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDKMGNLYFADGT--RIRVIDTTGIIST 507 (1899)
T ss_pred eEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCCceeEccCCcEEEeccc--EEEEeccCceEEE
Confidence 4777632 11 1 12211 011110 012689999999999999999865 8999999998877
Q ss_pred EecCCccc-cc--c------ccccccccCeEEEcc-CCeEEEEECCCCEEEEEeCCCCceeEEEEec-------cC-C--
Q 039428 189 IIRSPLFT-AK--E------WYKNVFGLNGIVYHP-DGFLIVIHMCSGNLFKIDIRKEEEEVKLIEL-------RG-G-- 248 (335)
Q Consensus 189 ~~~~~~~~-~~--~------~~~~~~~p~Gia~~~-dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~-------~g-~-- 248 (335)
++++.... +| + ..-++.=|..+|++| |+.|||-| ++-|++++.+.. +.++.. .+ .
T Consensus 508 lig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~r---V~Ii~GrP~hC~~a~~t~~ 582 (1899)
T KOG4659|consen 508 LIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHR---VRIILGRPTHCDLANATSS 582 (1899)
T ss_pred eccCCCCccCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCcc---EEEEcCCccccccCCCchh
Confidence 77652111 11 1 112333499999999 88999986 677899988875 233321 11 0
Q ss_pred -------cCCCCCCeEEEcCCCcEEEEecCC---CeEEEEEcCCCcEEEEEeee--------------ec-------CCC
Q 039428 249 -------SSLSLGDGLALLSPTKLVVAGNPY---PSARLVESSDGWETASVVAK--------------FN-------GPT 297 (335)
Q Consensus 249 -------~~~~~pdGia~d~~g~l~va~~~~---~~~~v~~~~~~~~~~~~~~~--------------~~-------~p~ 297 (335)
..+-.+..|++..+|.|||++... |+++++.. ++ +..-+.+- ++ ...
T Consensus 583 ~skla~H~tl~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~t-dg-~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~ 660 (1899)
T KOG4659|consen 583 ASKLADHRTLLIQRDIAVGTDGALYVAESDGRRINRVRKLST-DG-TISILAGAKSPCSCDVAACCDCFSLRDVAATQAK 660 (1899)
T ss_pred hhhhhhhhhhhhhhceeecCCceEEEEeccchhhhheEEecc-Cc-eEEEecCCCCCCCcccccCCccccccchhhhccc
Confidence 012357899999999999996633 55665543 22 22111110 11 123
Q ss_pred CCcceEEEEe-CCeEEEEec
Q 039428 298 HRVATAATVK-DGRVYLSHL 316 (335)
Q Consensus 298 ~~~Pt~va~~-~g~lyV~~~ 316 (335)
++.|.++|+. +|.+||++.
T Consensus 661 lnsp~alaVsPdg~v~IAD~ 680 (1899)
T KOG4659|consen 661 LNSPYALAVSPDGDVIIADS 680 (1899)
T ss_pred cCCcceEEECCCCcEEEecC
Confidence 7788999996 999999764
No 28
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.14 E-value=8e-08 Score=89.18 Aligned_cols=205 Identities=17% Similarity=0.192 Sum_probs=116.4
Q ss_pred cceeeeEEcCCCCEEEEE-ec-CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 49 FLCETAKWDDVGRRFLVS-FL-DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~-~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
..|+..+++++|+.+|+. .. .+.|.++|...++ ++.+ +.-|+ +....... +++.... +.|..
T Consensus 105 ~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~k----vv~e---i~vp~----~~~vy~t~-e~~~~~~-~~Dg~--- 168 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKA----FVRM---MDVPD----CYHIFPTA-NDTFFMH-CRDGS--- 168 (352)
T ss_pred CccceEEECCCCCEEEEecCCCCCEEEEEECCCCc----EEEE---EeCCC----CcEEEEec-CCccEEE-eecCc---
Confidence 356699999999988887 44 7899999975444 3432 22232 23333333 2333333 25543
Q ss_pred cceEEEEECCCCeEEEEeec-CCCcc-CCCCCCceeECC-CCc-EEEEeCCCCeEEEEccCCcEEEE---ecCCccccc-
Q 039428 127 YSALAAYDLSTWKRLFLTQL-SGKSE-EKSTADDIAVDA-EGN-AYVTDVVSSKIWKVGVEGQLLSI---IRSPLFTAK- 198 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~-~~~~~-~~~~p~~~~vd~-~G~-lyV~d~~~~~I~~~d~~g~~~~~---~~~~~~~~~- 198 (335)
..-..+|.++........+ ..... -+..| .+.+ +|+ +||+.. |.|+.+|..+..... +....+..+
T Consensus 169 -~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP---~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~ 242 (352)
T TIGR02658 169 -LAKVGYGTKGNPKIKPTEVFHPEDEYLINHP---AYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKA 242 (352)
T ss_pred -eEEEEecCCCceEEeeeeeecCCccccccCC---ceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccc
Confidence 1223344333311111111 00000 03455 3344 665 777654 999999965543221 111111111
Q ss_pred -cccccccccCeEEEccCC-eEEEEE---------CCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc--E
Q 039428 199 -EWYKNVFGLNGIVYHPDG-FLIVIH---------MCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK--L 265 (335)
Q Consensus 199 -~~~~~~~~p~Gia~~~dg-~Lyvad---------~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~--l 265 (335)
++.+. +...+++++|| +|||+. ...++|++||..+.+ ....+.+ | ..|.+|++.+||+ |
T Consensus 243 ~~wrP~--g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k-vi~~i~v-G----~~~~~iavS~Dgkp~l 314 (352)
T TIGR02658 243 DGWRPG--GWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK-RLRKIEL-G----HEIDSINVSQDAKPLL 314 (352)
T ss_pred cccCCC--cceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe-EEEEEeC-C----CceeeEEECCCCCeEE
Confidence 11121 22339999998 999953 233799999999875 5566665 4 2499999999975 6
Q ss_pred EEEecCCCeEEEEEcCCC
Q 039428 266 VVAGNPYPSARLVESSDG 283 (335)
Q Consensus 266 ~va~~~~~~~~v~~~~~~ 283 (335)
|+++..++.+.|++...+
T Consensus 315 yvtn~~s~~VsViD~~t~ 332 (352)
T TIGR02658 315 YALSTGDKTLYIFDAETG 332 (352)
T ss_pred EEeCCCCCcEEEEECcCC
Confidence 777766688999987654
No 29
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=99.10 E-value=9.7e-08 Score=84.54 Aligned_cols=208 Identities=16% Similarity=0.176 Sum_probs=109.6
Q ss_pred EEcCCCcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec
Q 039428 43 QYHSPSFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121 (335)
Q Consensus 43 ~~~~~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D 121 (335)
.+++...-+.|++|+|+.+.+|+. -..+.|++++. +|+ ++.+ +...+. .-+.||++-. ++.+.++ .+
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~----vlr~---i~l~g~--~D~EgI~y~g-~~~~vl~-~E 83 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGK----VLRR---IPLDGF--GDYEGITYLG-NGRYVLS-EE 83 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T------EEEE---EE-SS---SSEEEEEE-S-TTEEEEE-ET
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCC----EEEE---EeCCCC--CCceeEEEEC-CCEEEEE-Ec
Confidence 344444458999999986655555 66789999985 576 3442 223332 3578999973 5655552 32
Q ss_pred CCCCccceEEEEECC--CCeEE----EEeecCCCccCCCCCCceeECCC-CcEEEEeCCC-CeEEEEcc--CCcEEEEec
Q 039428 122 VLGNKYSALAAYDLS--TWKRL----FLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVS-SKIWKVGV--EGQLLSIIR 191 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~--~~~~~----~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~-~~I~~~d~--~g~~~~~~~ 191 (335)
.. ..++.++.. +..+. ....+.....+.....|++.|+. +++|++-... ..|+.++. .+.......
T Consensus 84 r~----~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~ 159 (248)
T PF06977_consen 84 RD----QRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSD 159 (248)
T ss_dssp TT----TEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE
T ss_pred CC----CcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeecc
Confidence 22 357777662 22211 11222222222355789999997 5788875543 46888876 222222111
Q ss_pred CCccccccccccccccCeEEEccC-CeEEEEECCCCEEEEEeCCCCceeEEEEeccCC-----cCCCCCCeEEEcCCCcE
Q 039428 192 SPLFTAKEWYKNVFGLNGIVYHPD-GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG-----SSLSLGDGLALLSPTKL 265 (335)
Q Consensus 192 ~~~~~~~~~~~~~~~p~Gia~~~d-g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~-----~~~~~pdGia~d~~g~l 265 (335)
...+. ........+.+++++|. |+||+-...+++|..+|.++. .+....+..+ ..+..|.||++|++|+|
T Consensus 160 ~~~~~--~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~--~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~L 235 (248)
T PF06977_consen 160 DQDLD--DDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGR--VVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNL 235 (248)
T ss_dssp -HHHH---HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT----EEEEEE-STTGGG-SS---SEEEEEE-TT--E
T ss_pred ccccc--cccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCC--EEEEEEeCCcccCcccccCCccEEEECCCCCE
Confidence 10000 00112234899999995 599999999999999998876 6666665431 12467999999999999
Q ss_pred EEEec
Q 039428 266 VVAGN 270 (335)
Q Consensus 266 ~va~~ 270 (335)
||++-
T Consensus 236 YIvsE 240 (248)
T PF06977_consen 236 YIVSE 240 (248)
T ss_dssp EEEET
T ss_pred EEEcC
Confidence 99964
No 30
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=99.09 E-value=1.7e-08 Score=89.35 Aligned_cols=200 Identities=15% Similarity=0.161 Sum_probs=108.9
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d 181 (335)
.+.||++++++++||+++ |.. ..|+.++.+ |+++..+++.+ +.-+.+|++-.+|.+.+++...+++++++
T Consensus 23 e~SGLTy~pd~~tLfaV~-d~~----~~i~els~~-G~vlr~i~l~g----~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQ-DEP----GEIYELSLD-GKVLRRIPLDG----FGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp -EEEEEEETTTTEEEEEE-TTT----TEEEEEETT---EEEEEE-SS-----SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred CccccEEcCCCCeEEEEE-CCC----CEEEEEcCC-CCEEEEEeCCC----CCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 478999999889999874 432 469999986 56766666632 56688999998898888998889999887
Q ss_pred cC--CcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCC-CEEEEEeC--CCCceeEEEEe---cc-CCcCC
Q 039428 182 VE--GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCS-GNLFKIDI--RKEEEEVKLIE---LR-GGSSL 251 (335)
Q Consensus 182 ~~--g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~-~~v~~~d~--~~~~~~~~~~~---~~-g~~~~ 251 (335)
.+ ++....-....+.-.-....-.+..|||+|+.+ +||++.-.. .+|+.++. ... ...... .. ....+
T Consensus 93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 170 (248)
T PF06977_consen 93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGF--DLFVSDDQDLDDDKLFV 170 (248)
T ss_dssp E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS----EEEE-HHHH-HT--S
T ss_pred EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCcc--ceeecccccccccccee
Confidence 63 222111000011100001122457899999976 888775444 46888876 222 222221 11 11123
Q ss_pred CCCCeEEEcCC-CcEEEEecCCCeEEEEEcCCCcEEEE---EeeeecC--CCCCcceEEEEe-CCeEEEEe
Q 039428 252 SLGDGLALLSP-TKLVVAGNPYPSARLVESSDGWETAS---VVAKFNG--PTHRVATAATVK-DGRVYLSH 315 (335)
Q Consensus 252 ~~pdGia~d~~-g~l~va~~~~~~~~v~~~~~~~~~~~---~~~~~~~--p~~~~Pt~va~~-~g~lyV~~ 315 (335)
..|.++++++. |+||+-+..+..+.+++ ..++... +....++ ....+|-+||++ +|+|||++
T Consensus 171 ~d~S~l~~~p~t~~lliLS~es~~l~~~d--~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 171 RDLSGLSYDPRTGHLLILSDESRLLLELD--RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp S---EEEEETTTTEEEEEETTTTEEEEE---TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred ccccceEEcCCCCeEEEEECCCCeEEEEC--CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 56899999987 68999977556554444 3322211 1111111 246789999997 89999954
No 31
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=99.09 E-value=4.7e-10 Score=82.75 Aligned_cols=70 Identities=19% Similarity=0.417 Sum_probs=54.5
Q ss_pred CceeECCC-CcEEEEeCC-----------------CCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-e
Q 039428 157 DDIAVDAE-GNAYVTDVV-----------------SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-F 217 (335)
Q Consensus 157 ~~~~vd~~-G~lyV~d~~-----------------~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~ 217 (335)
||+.|+++ |.+|+||+. +|+++++||.++..+++-+ .+..||||++++|+ .
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~----------~L~fpNGVals~d~~~ 70 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLD----------GLYFPNGVALSPDESF 70 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEE----------EESSEEEEEE-TTSSE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehh----------CCCccCeEEEcCCCCE
Confidence 68999998 999999972 6999999999887765432 24469999999999 8
Q ss_pred EEEEECCCCEEEEEeCCCC
Q 039428 218 LIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 218 Lyvad~~~~~v~~~d~~~~ 236 (335)
|+|+++...||.|+.++++
T Consensus 71 vlv~Et~~~Ri~rywl~Gp 89 (89)
T PF03088_consen 71 VLVAETGRYRILRYWLKGP 89 (89)
T ss_dssp EEEEEGGGTEEEEEESSST
T ss_pred EEEEeccCceEEEEEEeCC
Confidence 9999999999999998863
No 32
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.07 E-value=3.4e-08 Score=93.07 Aligned_cols=194 Identities=19% Similarity=0.248 Sum_probs=120.8
Q ss_pred CCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC
Q 039428 60 GRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW 138 (335)
Q Consensus 60 g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~ 138 (335)
++++++. ..+++|.++|..+.+ ++. .+.... ....++.+.+++..+||++.| +.|.++|+.++
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~----~~~---~i~~~~---~~h~~~~~s~Dgr~~yv~~rd------g~vsviD~~~~ 68 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNK----VVA---RIPTGG---APHAGLKFSPDGRYLYVANRD------GTVSVIDLATG 68 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-S----EEE---EEE-ST---TEEEEEE-TT-SSEEEEEETT------SEEEEEETTSS
T ss_pred ccEEEEEecCCCEEEEEECCCCe----EEE---EEcCCC---CceeEEEecCCCCEEEEEcCC------CeEEEEECCcc
Confidence 5778777 778999999954333 233 221111 123457777755679997543 35999999999
Q ss_pred eEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccCeEEEccCC
Q 039428 139 KRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG 216 (335)
Q Consensus 139 ~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg 216 (335)
+++..+.. ...|.++++++||+ +|+++...+.+..+|.+. +.+..+........ .......+|..++..
T Consensus 69 ~~v~~i~~------G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~---~~~~Rv~aIv~s~~~ 139 (369)
T PF02239_consen 69 KVVATIKV------GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVD---GPESRVAAIVASPGR 139 (369)
T ss_dssp SEEEEEE-------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TT---TS---EEEEEE-SSS
T ss_pred cEEEEEec------CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccccccc---ccCCCceeEEecCCC
Confidence 88765554 35688999999996 899999999999999765 33333321111110 011235688888877
Q ss_pred e-EEEEECCCCEEEEEeCCCCce-eEEEEeccCCcCCCCCCeEEEcCCCcE-EEEecCCCeEEEEEcCCC
Q 039428 217 F-LIVIHMCSGNLFKIDIRKEEE-EVKLIELRGGSSLSLGDGLALLSPTKL-VVAGNPYPSARLVESSDG 283 (335)
Q Consensus 217 ~-Lyvad~~~~~v~~~d~~~~~~-~~~~~~~~g~~~~~~pdGia~d~~g~l-~va~~~~~~~~v~~~~~~ 283 (335)
. .+++-...++|+.+|....+. ....+.. + ..|.+..+|++|+. +++.+.++.+.+++...+
T Consensus 140 ~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~-g----~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 140 PEFVVNLKDTGEIWVVDYSDPKNLKVTTIKV-G----RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp SEEEEEETTTTEEEEEETTTSSCEEEEEEE-------TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred CEEEEEEccCCeEEEEEeccccccceeeecc-c----ccccccccCcccceeeecccccceeEEEeeccc
Confidence 5 556777889999999877531 2233432 3 34889999999975 455666788888887655
No 33
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=99.03 E-value=1.3e-08 Score=99.67 Aligned_cols=197 Identities=20% Similarity=0.185 Sum_probs=140.9
Q ss_pred CcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 48 SFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
...+-||++|-..++.|++ +...+|.+-... |.-|. ..+ ..++ .+|.||++|--..++|- +|.-.++
T Consensus 1024 ~~IiVGidfDC~e~mvyWtDv~g~SI~rasL~-G~Ep~------ti~-n~~L--~SPEGiAVDh~~Rn~yw--tDS~lD~ 1091 (1289)
T KOG1214|consen 1024 GSIIVGIDFDCRERMVYWTDVAGRSISRASLE-GAEPE------TIV-NSGL--ISPEGIAVDHIRRNMYW--TDSVLDK 1091 (1289)
T ss_pred cceeeeeecccccceEEEeecCCCcccccccc-CCCCc------eee-cccC--CCccceeeeeccceeee--eccccch
Confidence 3357899999988888887 888899998754 54221 122 2333 38999999965667777 4765554
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCC--CCeEEEEccCCcEEEEecCCcccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVV--SSKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~--~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
-.+..+|-+-+++++..+ +-.|.+|++|+ .|+||.+|+. +..|-+.+.||+-.+++-+..
T Consensus 1092 -IevA~LdG~~rkvLf~td-------LVNPR~iv~D~~rgnLYwtDWnRenPkIets~mDG~NrRilin~D--------- 1154 (1289)
T KOG1214|consen 1092 -IEVALLDGSERKVLFYTD-------LVNPRAIVVDPIRGNLYWTDWNRENPKIETSSMDGENRRILINTD--------- 1154 (1289)
T ss_pred -hheeecCCceeeEEEeec-------ccCcceEEeecccCceeeccccccCCcceeeccCCccceEEeecc---------
Confidence 345556544444444333 56788999999 4799999986 678999999998777643322
Q ss_pred ccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
..-||||.|+|-. .|-..|.+++++--+.+++.+ .+.+ ..+ +.+|-++.-+.+ ++|-+++..|++..+..
T Consensus 1155 igLPNGLtfdpfs~~LCWvDAGt~rleC~~p~g~g--RR~i-~~~---LqYPF~itsy~~-~fY~TDWk~n~vvsv~~ 1225 (1289)
T KOG1214|consen 1155 IGLPNGLTFDPFSKLLCWVDAGTKRLECTLPDGTG--RRVI-QNN---LQYPFSITSYAD-HFYHTDWKRNGVVSVNK 1225 (1289)
T ss_pred cCCCCCceeCcccceeeEEecCCcceeEecCCCCc--chhh-hhc---ccCceeeeeccc-cceeeccccCceEEeec
Confidence 2239999999966 788999999999999998862 2333 233 788999998876 49999997777655554
No 34
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.96 E-value=6.5e-07 Score=79.19 Aligned_cols=201 Identities=14% Similarity=0.162 Sum_probs=123.4
Q ss_pred eeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 51 CETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
-.+++|+|+.+.+|+. .....|.+++. +|. ++. .+...++ .-|.+|+.- +++.||. .|-.... -.
T Consensus 88 vS~LTynp~~rtLFav~n~p~~iVElt~-~Gd----lir---tiPL~g~--~DpE~Ieyi--g~n~fvi-~dER~~~-l~ 153 (316)
T COG3204 88 VSSLTYNPDTRTLFAVTNKPAAIVELTK-EGD----LIR---TIPLTGF--SDPETIEYI--GGNQFVI-VDERDRA-LY 153 (316)
T ss_pred ccceeeCCCcceEEEecCCCceEEEEec-CCc----eEE---Eeccccc--CChhHeEEe--cCCEEEE-Eehhcce-EE
Confidence 4689999999988888 55578999984 676 233 2222332 367899987 4555665 3433222 22
Q ss_pred EEEEECCCCeEE---EEeecCCCccCCCCCCceeECCC-CcEEEEeCC-CCeEEEEccCCcEEEEecCCcccccccc--c
Q 039428 130 LAAYDLSTWKRL---FLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVV-SSKIWKVGVEGQLLSIIRSPLFTAKEWY--K 202 (335)
Q Consensus 130 v~~~d~~~~~~~---~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~-~~~I~~~d~~g~~~~~~~~~~~~~~~~~--~ 202 (335)
+..+|.++.... ..+.+.....+.....|++-|+. +++||+-.. .-+|++++..-+.... .....|... -
T Consensus 154 ~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~---~~~~~~~~~~~~ 230 (316)
T COG3204 154 LFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSV---HASLDPTADRDL 230 (316)
T ss_pred EEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCccccc---ccccCcccccce
Confidence 444555554332 12333222222456789999996 579998654 4578888743211111 000001000 0
Q ss_pred cccccCeEEEccC-CeEEEEECCCCEEEEEeCCCCceeEEEEec-cCCc----CCCCCCeEEEcCCCcEEEEec
Q 039428 203 NVFGLNGIVYHPD-GFLIVIHMCSGNLFKIDIRKEEEEVKLIEL-RGGS----SLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 203 ~~~~p~Gia~~~d-g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~-~g~~----~~~~pdGia~d~~g~l~va~~ 270 (335)
......|+.+++. ++|+|-...++.|..+|..+. ....+.+ .|.+ ..+.+.|+++|++|+||+++-
T Consensus 231 f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~--~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSE 302 (316)
T COG3204 231 FVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE--VIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSE 302 (316)
T ss_pred EeeccccceecCCCCcEEEEecCCceEEEEecCCC--eeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEec
Confidence 1223789999984 589988889999999999987 4544443 2222 236799999999999999944
No 35
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.95 E-value=5.4e-07 Score=79.54 Aligned_cols=194 Identities=20% Similarity=0.200 Sum_probs=119.9
Q ss_pred cCCCcceeeeEEcCCCCEEEEEec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 45 HSPSFLCETAKWDDVGRRFLVSFL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 45 ~~~~~~pegia~d~~g~~~~~~~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
+.+..+-+|+.+..+|.+|-.+.. ..+|.++|..+++ +..+ ...|... -..||++- +++||..+ .
T Consensus 41 Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~----~~~~---~~l~~~~--FgEGit~~--~d~l~qLT--W 107 (264)
T PF05096_consen 41 HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK----VLQS---VPLPPRY--FGEGITIL--GDKLYQLT--W 107 (264)
T ss_dssp --TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS----EEEE---EE-TTT----EEEEEEE--TTEEEEEE--S
T ss_pred CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc----EEEE---EECCccc--cceeEEEE--CCEEEEEE--e
Confidence 456678999999877877766632 3579999976665 2322 2223211 35799997 68999864 3
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCcccccccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWY 201 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~ 201 (335)
.. +..++||+++-+.......+ ..-+|++.|. ..+|+||. +.+|+.+||+.- ..+.+....-..
T Consensus 108 k~---~~~f~yd~~tl~~~~~~~y~------~EGWGLt~dg-~~Li~SDG-S~~L~~~dP~~f~~~~~i~V~~~g~---- 172 (264)
T PF05096_consen 108 KE---GTGFVYDPNTLKKIGTFPYP------GEGWGLTSDG-KRLIMSDG-SSRLYFLDPETFKEVRTIQVTDNGR---- 172 (264)
T ss_dssp SS---SEEEEEETTTTEEEEEEE-S------SS--EEEECS-SCEEEE-S-SSEEEEE-TTT-SEEEEEE-EETTE----
T ss_pred cC---CeEEEEccccceEEEEEecC------CcceEEEcCC-CEEEEECC-ccceEEECCcccceEEEEEEEECCE----
Confidence 22 35899999988776444442 3457899653 36999986 679999999742 222221100000
Q ss_pred ccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccC-------Cc----CCCCCCeEEEcCC-CcEEEEe
Q 039428 202 KNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRG-------GS----SLSLGDGLALLSP-TKLVVAG 269 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g-------~~----~~~~pdGia~d~~-g~l~va~ 269 (335)
.....|-+-+- +|.||..-..+++|.+||+.+++ ....+++.+ .. ....-.|||.|++ +++||++
T Consensus 173 -pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~-V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 173 -PVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGK-VVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp -E---EEEEEEE-TTEEEEEETTSSEEEEEETTT-B-EEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred -ECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCe-EEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 12347888887 89999999999999999999985 555554322 00 0234689999977 5899994
No 36
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=98.94 E-value=3e-07 Score=83.69 Aligned_cols=204 Identities=18% Similarity=0.165 Sum_probs=120.7
Q ss_pred eeeeEEcCCCCEEEEEec------------CCeEEEEECCCCCCCcceeeeeEEeecCCcC---CCCcceEEEeCCC---
Q 039428 51 CETAKWDDVGRRFLVSFL------------DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV---GNATMGIAVDRPR--- 112 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~------------~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~---~~~p~Gi~~d~~~--- 112 (335)
..++.+|+.|++|+++.. ..+|+.||..+.+ ++. .+..|... ....+.+++|..+
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~----li~---~~~~p~~~~~~~s~lndl~VD~~~~~~ 75 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQ----LIR---RYPFPPDIAPPDSFLNDLVVDVRDGNC 75 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTC----EEE---EEE--CCCS-TCGGEEEEEEECTTTTS
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCc----EEE---EEECChHHcccccccceEEEEccCCCC
Confidence 357899999999999932 1489999975554 333 22333211 1245889999633
Q ss_pred --CeEEEEEecCCCCccceEEEEECCCCeEEEEeecC-CCc----------cC---CCCCCceeECC---CC-cEEEEeC
Q 039428 113 --NRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLS-GKS----------EE---KSTADDIAVDA---EG-NAYVTDV 172 (335)
Q Consensus 113 --g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~----------~~---~~~p~~~~vd~---~G-~lyV~d~ 172 (335)
+.+|+ +|.... .|.+||.++++.....+-. .+. .. .....+++.++ +| .+|+.--
T Consensus 76 ~~~~aYI--tD~~~~---glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l 150 (287)
T PF03022_consen 76 DDGFAYI--TDSGGP---GLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL 150 (287)
T ss_dssp -SEEEEE--EETTTC---EEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET
T ss_pred cceEEEE--eCCCcC---cEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeC
Confidence 47888 676543 5999999998755332210 000 00 12244566654 55 4888876
Q ss_pred CCCeEEEEccC----CcEEEEe-cCCcccccccccc-ccccCeEEEccCCeEEEEECCCCEEEEEeCCCCc--eeEEEEe
Q 039428 173 VSSKIWKVGVE----GQLLSII-RSPLFTAKEWYKN-VFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEE--EEVKLIE 244 (335)
Q Consensus 173 ~~~~I~~~d~~----g~~~~~~-~~~~~~~~~~~~~-~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~--~~~~~~~ 244 (335)
.+..+|++... ....... ....+. ..+. .....|+++|++|.||+++...+.|.+.++++.- ...+.+.
T Consensus 151 ss~~ly~v~T~~L~~~~~~~~~~~~~~v~---~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~ 227 (287)
T PF03022_consen 151 SSRKLYRVPTSVLRDPSLSDAQALASQVQ---DLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILA 227 (287)
T ss_dssp T-SEEEEEEHHHHCSTT--HHH-HHHT-E---EEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEE
T ss_pred CCCcEEEEEHHHhhCccccccccccccce---eccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeE
Confidence 77788888643 1111000 000000 0011 1347999999999999999999999999999831 1444554
Q ss_pred ccCCcCCCCCCeEEEcC--CCcEEEEec
Q 039428 245 LRGGSSLSLGDGLALLS--PTKLVVAGN 270 (335)
Q Consensus 245 ~~g~~~~~~pdGia~d~--~g~l~va~~ 270 (335)
... ..+..|+++.++. +|.||+..+
T Consensus 228 ~d~-~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 228 QDP-RTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp E-C-C-GSSEEEEEE-T--TS-EEEEE-
T ss_pred EcC-ceeeccceeeeccccCceEEEEEC
Confidence 333 3378899999999 999999965
No 37
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=98.91 E-value=1.1e-07 Score=97.24 Aligned_cols=239 Identities=14% Similarity=0.106 Sum_probs=146.6
Q ss_pred hhhhhhhhhhhhhhhcCCCcee-E----------EEc-CCCcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcce
Q 039428 20 IPIAYIISIELAIAMAKPATHV-Y----------QYH-SPSFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTV 86 (335)
Q Consensus 20 ~p~~~~~~~~~~~~~~d~~~~~-~----------~~~-~~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v 86 (335)
.|++++.+.++...+.|-+--+ | ++. .....---+|++|-..-+|++ -.+.+|+++..-..+-+..
T Consensus 366 aPvala~a~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~- 444 (1899)
T KOG4659|consen 366 APVALAYAPDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRN- 444 (1899)
T ss_pred ceeeEEEcCCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEeccCCcccccc-
Confidence 4888888888888887765321 2 221 112233568999976666666 6678899986332211000
Q ss_pred eeeeEEeec-----C--C------c----CCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCC-
Q 039428 87 LEEVKLVKE-----D--D------V----VGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSG- 148 (335)
Q Consensus 87 ~~~~~~~~~-----~--~------~----~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~- 148 (335)
--+ .+... | + . .-..|.||++|. .|.||. +|. ..|.++|..+ -+.....-.+
T Consensus 445 N~e-vvaG~Ge~Clp~desCGDGalA~dA~L~~PkGIa~dk-~g~lYf--aD~-----t~IR~iD~~g-iIstlig~~~~ 514 (1899)
T KOG4659|consen 445 NYE-VVAGDGEVCLPADESCGDGALAQDAQLIFPKGIAFDK-MGNLYF--ADG-----TRIRVIDTTG-IISTLIGTTPD 514 (1899)
T ss_pred Cee-EEeccCcCccccccccCcchhcccceeccCCceeEcc-CCcEEE--ecc-----cEEEEeccCc-eEEEeccCCCC
Confidence 000 01100 1 0 0 013589999995 899999 565 4688888643 2221110000
Q ss_pred ---C----------ccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCcEEEEecCCccc-ccc---------ccccc
Q 039428 149 ---K----------SEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFT-AKE---------WYKNV 204 (335)
Q Consensus 149 ---~----------~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~-~~~---------~~~~~ 204 (335)
| .-....|.+++|+| |+.+||-| ++-|++++.++....++++|.-- -++ ....+
T Consensus 515 ~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld--~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl 592 (1899)
T KOG4659|consen 515 QHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLD--TNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTL 592 (1899)
T ss_pred ccCccccccccchhheeeecccceeecCCCCeEEEee--cceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhh
Confidence 0 01257899999999 57899987 57999999999887666664211 111 22345
Q ss_pred cccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEecc----------------------CCcCCCCCCeEEEcCC
Q 039428 205 FGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR----------------------GGSSLSLGDGLALLSP 262 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~----------------------g~~~~~~pdGia~d~~ 262 (335)
..+..|++.++|.|||+++...+|-|+..-+..+....+... .+..+..|..+|+.|+
T Consensus 593 ~~~r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPd 672 (1899)
T KOG4659|consen 593 LIQRDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPD 672 (1899)
T ss_pred hhhhceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCC
Confidence 568999999999999999998666555432211022222100 0123578999999999
Q ss_pred CcEEEEecC
Q 039428 263 TKLVVAGNP 271 (335)
Q Consensus 263 g~l~va~~~ 271 (335)
|.+|+|+.+
T Consensus 673 g~v~IAD~g 681 (1899)
T KOG4659|consen 673 GDVIIADSG 681 (1899)
T ss_pred CcEEEecCC
Confidence 999999774
No 38
>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=98.90 E-value=8.4e-08 Score=94.21 Aligned_cols=226 Identities=18% Similarity=0.179 Sum_probs=149.3
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC
Q 039428 59 VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW 138 (335)
Q Consensus 59 ~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~ 138 (335)
-|..+++. ....|.++.. ++..-.+ .+.+.++..|. ..+.||.+|=.+..+|- .|..++ .|.+-.+++.
T Consensus 989 ~gt~LL~a-qg~~I~~lpl-ng~~~~K-~~ak~~l~~p~---~IiVGidfDC~e~mvyW--tDv~g~---SI~rasL~G~ 1057 (1289)
T KOG1214|consen 989 VGTFLLYA-QGQQIGYLPL-NGTRLQK-DAAKTLLSLPG---SIIVGIDFDCRERMVYW--TDVAGR---SISRASLEGA 1057 (1289)
T ss_pred CcceEEEe-ccceEEEeec-Ccchhch-hhhhceEeccc---ceeeeeecccccceEEE--eecCCC---ccccccccCC
Confidence 34444444 3568888853 4431000 01122444443 36789999976677777 577665 3777667666
Q ss_pred eEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccC-C
Q 039428 139 KRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD-G 216 (335)
Q Consensus 139 ~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d-g 216 (335)
+....++ +++..|.|||||--+ |+|.+|+...+|-+-..+|++.+++ |.. .+.+|.+|++|+= |
T Consensus 1058 Ep~ti~n-----~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvL----f~t-----dLVNPR~iv~D~~rg 1123 (1289)
T KOG1214|consen 1058 EPETIVN-----SGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVL----FYT-----DLVNPRAIVVDPIRG 1123 (1289)
T ss_pred CCceeec-----ccCCCccceeeeeccceeeeeccccchhheeecCCceeeEE----Eee-----cccCcceEEeecccC
Confidence 5543222 237889999999875 6999999999999999999887643 322 5678999999995 5
Q ss_pred eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcCCCcEEEEEeeee
Q 039428 217 FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESSDGWETASVVAKF 293 (335)
Q Consensus 217 ~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~~~~~~~~~~~~~ 293 (335)
+||.+|+. +-+|-+.++++. ..+++- .. .+..|.|+.+|+..+ |--++.+.+++..+..+ +..+-.+.
T Consensus 1124 nLYwtDWnRenPkIets~mDG~--NrRili-n~--DigLPNGLtfdpfs~~LCWvDAGt~rleC~~p~-g~gRR~i~--- 1194 (1289)
T KOG1214|consen 1124 NLYWTDWNRENPKIETSSMDGE--NRRILI-NT--DIGLPNGLTFDPFSKLLCWVDAGTKRLECTLPD-GTGRRVIQ--- 1194 (1289)
T ss_pred ceeeccccccCCcceeeccCCc--cceEEe-ec--ccCCCCCceeCcccceeeEEecCCcceeEecCC-CCcchhhh---
Confidence 99999986 568999999987 445443 22 256799999999864 33334444666665543 31111122
Q ss_pred cCCCCCcceEEEEeCCeEEEEeccCCC
Q 039428 294 NGPTHRVATAATVKDGRVYLSHLLGLG 320 (335)
Q Consensus 294 ~~p~~~~Pt~va~~~g~lyV~~~~~~~ 320 (335)
..+++|.+++-.++++|.++|.-++
T Consensus 1195 --~~LqYPF~itsy~~~fY~TDWk~n~ 1219 (1289)
T KOG1214|consen 1195 --NNLQYPFSITSYADHFYHTDWKRNG 1219 (1289)
T ss_pred --hcccCceeeeeccccceeeccccCc
Confidence 2366788888877779999887665
No 39
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=98.88 E-value=9.6e-08 Score=87.51 Aligned_cols=147 Identities=24% Similarity=0.315 Sum_probs=100.3
Q ss_pred CCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECC--------
Q 039428 154 STADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC-------- 224 (335)
Q Consensus 154 ~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~-------- 224 (335)
.+|-|++++..| ++||+|.+-| +++++++|+..+.+.++... ......|++.++++|.+|++|+.
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYlG-L~~V~p~g~~a~~l~~~~~G-----~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~ 188 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYLG-LLKVGPEGGLAELLADEAEG-----KPFKFLNDLDIDPEGVVYFTDSSSKYDRRDF 188 (376)
T ss_pred CCcceEEeccCCCeEEEEeccee-eEEECCCCCcceeccccccC-----eeeeecCceeEcCCCeEEEeccccccchhhe
Confidence 799999999987 8999999865 89999998876543322111 12346899999998899999975
Q ss_pred ---------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcCCC-cEEEEEeeee
Q 039428 225 ---------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESSDG-WETASVVAKF 293 (335)
Q Consensus 225 ---------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~~~-~~~~~~~~~~ 293 (335)
+||++++|+.+. ..+++- .+ +..|.|+++.+|+. +.+|+....+++.+-.... .-+.++...
T Consensus 189 ~~a~l~g~~~GRl~~YD~~tK--~~~VLl-d~---L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi~g~k~gt~EvFa~- 261 (376)
T KOG1520|consen 189 VFAALEGDPTGRLFRYDPSTK--VTKVLL-DG---LYFPNGLALSPDGSFVLVAETTTARIKRYWIKGPKAGTSEVFAE- 261 (376)
T ss_pred EEeeecCCCccceEEecCccc--chhhhh-hc---ccccccccCCCCCCEEEEEeeccceeeeeEecCCccCchhhHhh-
Confidence 488999998876 444442 33 67899999999985 6666664334433322211 111122221
Q ss_pred cCCCCCcceEEEEe-CCeEEEEe
Q 039428 294 NGPTHRVATAATVK-DGRVYLSH 315 (335)
Q Consensus 294 ~~p~~~~Pt~va~~-~g~lyV~~ 315 (335)
..| .+|.++..+ +|+.||+-
T Consensus 262 ~LP--G~PDNIR~~~~G~fWVal 282 (376)
T KOG1520|consen 262 GLP--GYPDNIRRDSTGHFWVAL 282 (376)
T ss_pred cCC--CCCcceeECCCCCEEEEE
Confidence 123 357789886 89999943
No 40
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.75 E-value=2.9e-06 Score=81.27 Aligned_cols=177 Identities=14% Similarity=0.193 Sum_probs=106.4
Q ss_pred CCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCc----CCCCcceEEEeCC------CCeEE
Q 039428 47 PSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDV----VGNATMGIAVDRP------RNRLL 116 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~----~~~~p~Gi~~d~~------~g~l~ 116 (335)
.-..|+++++.|+|++|++....|+|+++++.++.. . .....+.. ....+.||+++|+ ++.||
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~-----~--~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lY 100 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEV-----K--VVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVY 100 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCce-----e--eeecCCceeccCCCCceeeEEECCCccccCCCcEEE
Confidence 344799999999998776655579999998533321 1 11112211 1246789999853 45799
Q ss_pred EEEecCCCC----ccceEEEEECCC--CeE----EEEeecCCCccCCCCCCceeECCCCcEEEEeCC-------------
Q 039428 117 VAFTDVLGN----KYSALAAYDLST--WKR----LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV------------- 173 (335)
Q Consensus 117 v~~~D~~~~----~~~~v~~~d~~~--~~~----~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~------------- 173 (335)
++.+..... ...+|.++..+. ..+ ......+ ....+.-..|+|+|||.|||+-..
T Consensus 101 vsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP--~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 101 ISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLP--AGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred EEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCC--CCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence 975432111 125788887642 111 1111221 112355567999999999996211
Q ss_pred -------------------CCeEEEEccCCcEEEEecCCccc--ccc-ccccccccCeEEEccCCeEEEEECCC---CEE
Q 039428 174 -------------------SSKIWKVGVEGQLLSIIRSPLFT--AKE-WYKNVFGLNGIVYHPDGFLIVIHMCS---GNL 228 (335)
Q Consensus 174 -------------------~~~I~~~d~~g~~~~~~~~~~~~--~~~-~~~~~~~p~Gia~~~dg~Lyvad~~~---~~v 228 (335)
.+.|+|++++|+... +++... .++ ..-...+|.|++++|+|.||+++.+. ..|
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~--dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~Lw~~e~Gp~~~DEi 256 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPK--DNPSINGVVSHIFTYGHRNPQGLAFTPDGTLYASEQGPNSDDEL 256 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCC--CCCccCCCcceEEEEeccccceeEECCCCCEEEEecCCCCCcEE
Confidence 347899998886321 111110 011 22356679999999999999999764 467
Q ss_pred EEEeCC
Q 039428 229 FKIDIR 234 (335)
Q Consensus 229 ~~~d~~ 234 (335)
.++...
T Consensus 257 N~I~~G 262 (454)
T TIGR03606 257 NIIVKG 262 (454)
T ss_pred EEeccC
Confidence 766543
No 41
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.73 E-value=3.2e-05 Score=67.88 Aligned_cols=196 Identities=16% Similarity=0.172 Sum_probs=126.4
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
...+++|+++++.+++...++.|..++..++.. .. ...... .....+.+.+.+..++++..| +.
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~----~~---~~~~~~---~~i~~~~~~~~~~~l~~~~~~------~~ 74 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL----LR---TLKGHT---GPVRDVAASADGTYLASGSSD------KT 74 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc----EE---EEecCC---cceeEEEECCCCCEEEEEcCC------Ce
Confidence 357899999998888887789999998543431 11 111111 133578888744355553222 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
|..||.++++....... . ......+.++++++++++....+.|..++.. ++....+.. ......
T Consensus 75 i~i~~~~~~~~~~~~~~----~-~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------~~~~i~ 139 (289)
T cd00200 75 IRLWDLETGECVRTLTG----H-TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG----------HTDWVN 139 (289)
T ss_pred EEEEEcCcccceEEEec----c-CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc----------CCCcEE
Confidence 99999987644422221 1 2356778999998888887778999999987 444332210 112378
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcCC
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVESSD 282 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~~ 282 (335)
.+++++++.++++...++.|..+|....+ ....+.... .....+.+.++++ ++++.. .+.+.+++...
T Consensus 140 ~~~~~~~~~~l~~~~~~~~i~i~d~~~~~-~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~ 208 (289)
T cd00200 140 SVAFSPDGTFVASSSQDGTIKLWDLRTGK-CVATLTGHT----GEVNSVAFSPDGEKLLSSSS-DGTIKLWDLST 208 (289)
T ss_pred EEEEcCcCCEEEEEcCCCcEEEEEccccc-cceeEecCc----cccceEEECCCcCEEEEecC-CCcEEEEECCC
Confidence 89999988777666678899999998653 344444221 2367899999984 555543 46788877654
No 42
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.73 E-value=6.4e-05 Score=65.96 Aligned_cols=194 Identities=12% Similarity=0.127 Sum_probs=127.1
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..+.|.++++.+++...++.|..++..+++. .. .+. ... .....+.+++ ++.++++.. .. +.|.
T Consensus 55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~----~~--~~~-~~~---~~i~~~~~~~-~~~~~~~~~-~~----~~i~ 118 (289)
T cd00200 55 RDVAASADGTYLASGSSDKTIRLWDLETGEC----VR--TLT-GHT---SYVSSVAFSP-DGRILSSSS-RD----KTIK 118 (289)
T ss_pred eEEEECCCCCEEEEEcCCCeEEEEEcCcccc----eE--EEe-ccC---CcEEEEEEcC-CCCEEEEec-CC----CeEE
Confidence 5889999998888777789999998643331 11 121 111 2467888886 566666433 11 3599
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccCeE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
.||..+++....... . ......+++++++.++++....+.|..+|... +....+. . .......+
T Consensus 119 ~~~~~~~~~~~~~~~----~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-----~-----~~~~i~~~ 183 (289)
T cd00200 119 VWDVETGKCLTTLRG----H-TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT-----G-----HTGEVNSV 183 (289)
T ss_pred EEECCCcEEEEEecc----C-CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEe-----c-----CccccceE
Confidence 999987665533321 1 34567899999988777777688999999863 3333221 1 11247899
Q ss_pred EEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 211 VYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 211 a~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
++++++ .++++. .++.|..+|....+ ....+.... .....+.+++++.++++....+.+++++...
T Consensus 184 ~~~~~~~~l~~~~-~~~~i~i~d~~~~~-~~~~~~~~~----~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 184 AFSPDGEKLLSSS-SDGTIKLWDLSTGK-CLGTLRGHE----NGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred EECCCcCEEEEec-CCCcEEEEECCCCc-eecchhhcC----CceEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 999999 555555 48899999998653 333332111 2467899999888888755347788887654
No 43
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=98.66 E-value=4.3e-05 Score=68.27 Aligned_cols=218 Identities=11% Similarity=0.070 Sum_probs=129.0
Q ss_pred CCcceeeeEEcCCCCEEEEEecCCeEEEEECC-C---CCCCcceeeeeEEeecC---CcC-CCCcceEEEeCCCCeEEEE
Q 039428 47 PSFLCETAKWDDVGRRFLVSFLDGGVGQVLVP-D---EYSPGTVLEEVKLVKED---DVV-GNATMGIAVDRPRNRLLVA 118 (335)
Q Consensus 47 ~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~-~---g~~~~~v~~~~~~~~~~---~~~-~~~p~Gi~~d~~~g~l~v~ 118 (335)
.-.-|+||++.|.+.+|+.+...+....+|.. + +. +.+ + .+..| +.. ...|.|+.++. ...+-|.
T Consensus 21 ~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~-~~~-L----~vtiP~~~~~~~~~~PTGiVfN~-~~~F~vt 93 (336)
T TIGR03118 21 GLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLV-QDP-L----VVVIPAPPPLAAEGTPTGQVFNG-SDTFVVS 93 (336)
T ss_pred cccccceeEecCCCCEEEecCCcceEEeecCCcccccCC-ccc-e----EEEecCCCCCCCCCCccEEEEeC-CCceEEc
Confidence 34569999999999777777666766666531 1 11 101 1 11222 111 13689999984 3333332
Q ss_pred EecCCCCccceEEEEECCCCeEE-EE------------eecCCCccCCCCCCceeECCC---CcEEEEeCCCCeEEEEcc
Q 039428 119 FTDVLGNKYSALAAYDLSTWKRL-FL------------TQLSGKSEEKSTADDIAVDAE---GNAYVTDVVSSKIWKVGV 182 (335)
Q Consensus 119 ~~D~~~~~~~~v~~~d~~~~~~~-~~------------~~~~~~~~~~~~p~~~~vd~~---G~lyV~d~~~~~I~~~d~ 182 (335)
...... ...+.|-.+.|.+. +. ..+.. +....---++++... ..||.+|-.+++|-++|.
T Consensus 94 -~~g~~~--~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~-s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~ 169 (336)
T TIGR03118 94 -GEGITG--PSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDA-SQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKG 169 (336)
T ss_pred -CCCccc--ceeEEEEeCCceEEeecCcCCcccccccEEEEcc-CCCcceeeeeEEeecCCCceEEEeccCCCceEEecC
Confidence 111000 12233333333322 11 00100 111223346776643 359999999999999976
Q ss_pred CCcEEEEecCCccccccccccccccCeEEEccCCeEEEEEC-------------CCCEEEEEeCCCCceeEEEEeccCCc
Q 039428 183 EGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHM-------------CSGNLFKIDIRKEEEEVKLIELRGGS 249 (335)
Q Consensus 183 ~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~-------------~~~~v~~~d~~~~~~~~~~~~~~g~~ 249 (335)
.=....+ ...|..|. .|....|-+|.-- .++|||+-. +.+.|-+||+++. .++++...+ .
T Consensus 170 ~f~~~~~--~g~F~DP~-iPagyAPFnIqni-g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~--l~~r~as~g-~ 242 (336)
T TIGR03118 170 SFRPPPL--PGSFIDPA-LPAGYAPFNVQNL-GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQ--LLRRVASSG-R 242 (336)
T ss_pred ccccccC--CCCccCCC-CCCCCCCcceEEE-CCeEEEEEEecCCcccccccCCCcceEEEEcCCCc--EEEEeccCC-c
Confidence 5332221 12344432 3456678888766 679998732 3478999999998 788886433 4
Q ss_pred CCCCCCeEEEcCC------CcEEEEecCCCeEEEEEcCCC
Q 039428 250 SLSLGDGLALLSP------TKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 250 ~~~~pdGia~d~~------g~l~va~~~~~~~~v~~~~~~ 283 (335)
++.|+||++.|. |.|.|.+.+++.|.+++...+
T Consensus 243 -LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 243 -LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred -ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 889999999764 789999998888988886655
No 44
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=98.61 E-value=2.7e-06 Score=81.51 Aligned_cols=163 Identities=12% Similarity=0.145 Sum_probs=100.7
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCC--ccCCCCCCceeECCC-------CcEEEEeC
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGK--SEEKSTADDIAVDAE-------GNAYVTDV 172 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~p~~~~vd~~-------G~lyV~d~ 172 (335)
.|.+|++.+ +|++||+-.+. .+|++++..++.......++.. ..+...+.||+++|+ +.+||+-+
T Consensus 31 ~Pw~maflP-DG~llVtER~~-----G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 31 KPWALLWGP-DNQLWVTERAT-----GKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred CceEEEEcC-CCeEEEEEecC-----CEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 788999997 78999953211 3599998776543322222211 112577899999876 36999742
Q ss_pred ---------CCCeEEEEccCCc------EEEEecCCccccccccccccccCeEEEccCCeEEEEECC-------------
Q 039428 173 ---------VSSKIWKVGVEGQ------LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC------------- 224 (335)
Q Consensus 173 ---------~~~~I~~~d~~g~------~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~------------- 224 (335)
...+|.|+..+.. ...++.. .|. .....-..|+|+|||.||++-..
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~----lP~--~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~ 178 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAG----LPA--GNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPN 178 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEec----CCC--CCCcCCceEEECCCCcEEEEECCCCCCCcccccCcc
Confidence 2468888765421 1111211 010 01233567899999999995433
Q ss_pred -------------------CCEEEEEeCCCCc--------e-eEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCC---C
Q 039428 225 -------------------SGNLFKIDIRKEE--------E-EVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPY---P 273 (335)
Q Consensus 225 -------------------~~~v~~~d~~~~~--------~-~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~---~ 273 (335)
.++|+|+++++.- + ..+++.. | +..|.||++|++|.||+++.+. .
T Consensus 179 ~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~-G---~RNp~Gla~dp~G~Lw~~e~Gp~~~D 254 (454)
T TIGR03606 179 QAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTY-G---HRNPQGLAFTPDGTLYASEQGPNSDD 254 (454)
T ss_pred hhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEE-e---ccccceeEECCCCCEEEEecCCCCCc
Confidence 2479999988741 0 1234443 3 4679999999999999996542 3
Q ss_pred eEEEEEc
Q 039428 274 SARLVES 280 (335)
Q Consensus 274 ~~~v~~~ 280 (335)
.+.++..
T Consensus 255 EiN~I~~ 261 (454)
T TIGR03606 255 ELNIIVK 261 (454)
T ss_pred EEEEecc
Confidence 4555553
No 45
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.59 E-value=1.2e-05 Score=78.92 Aligned_cols=200 Identities=16% Similarity=0.131 Sum_probs=117.8
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEe--CCCCeEEEEEecCC------------
Q 039428 59 VGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVD--RPRNRLLVAFTDVL------------ 123 (335)
Q Consensus 59 ~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d--~~~g~l~v~~~D~~------------ 123 (335)
+|+.+|+. -.+.+|.|++...=+ +. +.+..|... ..+|+++. |..+.+++.. ...
T Consensus 140 dGr~~findk~n~Rvari~l~~~~-----~~--~i~~iPn~~--~~Hg~~~~~~p~t~yv~~~~-e~~~PlpnDGk~l~~ 209 (635)
T PRK02888 140 DGRYLFINDKANTRVARIRLDVMK-----CD--KITELPNVQ--GIHGLRPQKIPRTGYVFCNG-EFRIPLPNDGKDLDD 209 (635)
T ss_pred ceeEEEEecCCCcceEEEECccEe-----ec--eeEeCCCcc--CccccCccccCCccEEEeCc-ccccccCCCCCEeec
Confidence 46666666 557889999853211 12 244456543 44666665 3333333321 110
Q ss_pred --CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC---CCC-----------eEEEEccC---
Q 039428 124 --GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV---VSS-----------KIWKVGVE--- 183 (335)
Q Consensus 124 --~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~---~~~-----------~I~~~d~~--- 183 (335)
.. .+.+..+|.++.++.+.+.+ ...|..+.++++|. +|++.. ... .+..|+..
T Consensus 210 ~~ey-~~~vSvID~etmeV~~qV~V------dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~ie 282 (635)
T PRK02888 210 PKKY-RSLFTAVDAETMEVAWQVMV------DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIE 282 (635)
T ss_pred ccce-eEEEEEEECccceEEEEEEe------CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHH
Confidence 11 25677889888877766655 24788999999975 888742 111 22333321
Q ss_pred -----Cc-------EEEEecCCc-----cccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCce-------
Q 039428 184 -----GQ-------LLSIIRSPL-----FTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEE------- 238 (335)
Q Consensus 184 -----g~-------~~~~~~~~~-----~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~------- 238 (335)
|+ .+.++.... ...-...+....|.|++++||| ++|+++..++.|.+||....+.
T Consensus 283 a~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~ 362 (635)
T PRK02888 283 EAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIK 362 (635)
T ss_pred HhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCC
Confidence 21 112221111 0000124466789999999999 9999999999999999987420
Q ss_pred ----eEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 239 ----EVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 239 ----~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
.+..+.+ | .+|-..++|++|+.|++-.-...+...+.
T Consensus 363 ~~~~vvaevev-G----lGPLHTaFDg~G~aytslf~dsqv~kwn~ 403 (635)
T PRK02888 363 PRDAVVAEPEL-G----LGPLHTAFDGRGNAYTTLFLDSQIVKWNI 403 (635)
T ss_pred ccceEEEeecc-C----CCcceEEECCCCCEEEeEeecceeEEEeh
Confidence 1122222 3 35999999999999999553344444443
No 46
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=98.59 E-value=4.6e-06 Score=73.72 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=100.9
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..+.||+++..+ .+|..+..++..+++|..+-+ .+. ..+.++ -..||+.| +.+||+ +|..
T Consensus 89 ~~FgEGit~~~d-~l~qLTWk~~~~f~yd~~tl~----~~~---~~~y~~----EGWGLt~d--g~~Li~--SDGS---- 148 (264)
T PF05096_consen 89 RYFGEGITILGD-KLYQLTWKEGTGFVYDPNTLK----KIG---TFPYPG----EGWGLTSD--GKRLIM--SDGS---- 148 (264)
T ss_dssp T--EEEEEEETT-EEEEEESSSSEEEEEETTTTE----EEE---EEE-SS----S--EEEEC--SSCEEE--E-SS----
T ss_pred cccceeEEEECC-EEEEEEecCCeEEEEccccce----EEE---EEecCC----cceEEEcC--CCEEEE--ECCc----
Confidence 347899999854 566666778999999953222 122 223332 34699866 678999 5553
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCccccc-----ccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAK-----EWY 201 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~-----~~~ 201 (335)
++|+.+||++-+....+.+...+.+....|.+.+- +|.+|..-+.+.+|.+|||... ....+.-..+..+ ...
T Consensus 149 ~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~ 227 (264)
T PF05096_consen 149 SRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQ 227 (264)
T ss_dssp SEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST-
T ss_pred cceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhccccccccc
Confidence 56999999987665444443233346778888884 7999999999999999999854 4433321111110 001
Q ss_pred ccccccCeEEEccCC-eEEEEECCCCEEEEEeCC
Q 039428 202 KNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIR 234 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~ 234 (335)
+...-.||||++|+. ++||+--.=.++|++.+.
T Consensus 228 ~~~dVLNGIAyd~~~~~l~vTGK~Wp~lyeV~l~ 261 (264)
T PF05096_consen 228 PDDDVLNGIAYDPETDRLFVTGKLWPKLYEVKLV 261 (264)
T ss_dssp -TTS-EEEEEEETTTTEEEEEETT-SEEEEEEEE
T ss_pred ccCCeeEeEeEeCCCCEEEEEeCCCCceEEEEEE
Confidence 112348999999977 999997766788887653
No 47
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.56 E-value=9.5e-05 Score=71.50 Aligned_cols=195 Identities=13% Similarity=0.117 Sum_probs=112.8
Q ss_pred ceeeeEEcCCCCEE-EEEe--cCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 50 LCETAKWDDVGRRF-LVSF--LDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~~g~~~-~~~~--~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
.-..++|+|+|+.+ |++. ....|+.+|..+++ .. .+...++ .....+++|++..|+++. +..+.
T Consensus 203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~-----~~--~l~~~~g----~~~~~~~SPDG~~la~~~-~~~g~- 269 (435)
T PRK05137 203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ-----RE--LVGNFPG----MTFAPRFSPDGRKVVMSL-SQGGN- 269 (435)
T ss_pred CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc-----EE--EeecCCC----cccCcEECCCCCEEEEEE-ecCCC-
Confidence 34678999999854 4443 23689999965444 11 1222222 234677888555565542 22222
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEE-EeC-CCCeEEEEccCCcEEEEecCCcccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYV-TDV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV-~d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
..|+.+|.++++....... ........++|||+ +++ ++. ....||++|.+++..+.+.. .
T Consensus 270 -~~Iy~~d~~~~~~~~Lt~~------~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~---~------- 332 (435)
T PRK05137 270 -TDIYTMDLRSGTTTRLTDS------PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF---G------- 332 (435)
T ss_pred -ceEEEEECCCCceEEccCC------CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec---C-------
Confidence 4699999998866532211 12334578899986 444 432 24589999988765442211 0
Q ss_pred ccccCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE-ec-CC---Ce
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA-GN-PY---PS 274 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va-~~-~~---~~ 274 (335)
.......+++||| .|+++.... .+|+.++++++ ..+.+.. + . ....+.+.+||+ ++++ +. +. ..
T Consensus 333 ~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~--~~~~lt~-~-~---~~~~p~~spDG~~i~~~~~~~~~~~~~~ 405 (435)
T PRK05137 333 GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS--GERILTS-G-F---LVEGPTWAPNGRVIMFFRQTPGSGGAPK 405 (435)
T ss_pred CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC--ceEeccC-C-C---CCCCCeECCCCCEEEEEEccCCCCCcce
Confidence 0123457899999 776665433 47999998776 3444432 2 1 245678899986 4444 22 11 24
Q ss_pred EEEEEcC
Q 039428 275 ARLVESS 281 (335)
Q Consensus 275 ~~v~~~~ 281 (335)
+.+++.+
T Consensus 406 L~~~dl~ 412 (435)
T PRK05137 406 LYTVDLT 412 (435)
T ss_pred EEEEECC
Confidence 5666553
No 48
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=98.54 E-value=1.2e-06 Score=81.43 Aligned_cols=110 Identities=26% Similarity=0.427 Sum_probs=70.1
Q ss_pred CCCCceeECCCCcEEEEeCCCCeEEEEccCCcE-EEEecCCccccccccccccccCeEEEccC----CeEEEEECCC---
Q 039428 154 STADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAKEWYKNVFGLNGIVYHPD----GFLIVIHMCS--- 225 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~~~~~~~~~p~Gia~~~d----g~Lyvad~~~--- 225 (335)
..|..|++.|||++||++. .|+|++++.+|.. ..+...+... .....+..||+++|+ ++||++-+..
T Consensus 2 ~~P~~~a~~pdG~l~v~e~-~G~i~~~~~~g~~~~~v~~~~~v~----~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~ 76 (331)
T PF07995_consen 2 NNPRSMAFLPDGRLLVAER-SGRIWVVDKDGSLKTPVADLPEVF----ADGERGLLGIAFHPDFASNGYLYVYYTNADED 76 (331)
T ss_dssp SSEEEEEEETTSCEEEEET-TTEEEEEETTTEECEEEEE-TTTB----TSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TS
T ss_pred CCceEEEEeCCCcEEEEeC-CceEEEEeCCCcCcceeccccccc----ccccCCcccceeccccCCCCEEEEEEEcccCC
Confidence 4688999999999999988 8999999988776 2221111111 123456899999995 6888877633
Q ss_pred -----CEEEEEeCCCCc---eeEE-EEec-cC-CcCCCCCCeEEEcCCCcEEEE
Q 039428 226 -----GNLFKIDIRKEE---EEVK-LIEL-RG-GSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 226 -----~~v~~~d~~~~~---~~~~-~~~~-~g-~~~~~~pdGia~d~~g~l~va 268 (335)
.+|.|+..+... ...+ ++.. +. ....-...+|+++++|.|||+
T Consensus 77 ~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs 130 (331)
T PF07995_consen 77 GGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVS 130 (331)
T ss_dssp SSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEE
T ss_pred CCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEE
Confidence 589988887641 1112 2211 11 011223467999999999999
No 49
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.54 E-value=0.00014 Score=63.85 Aligned_cols=233 Identities=12% Similarity=0.123 Sum_probs=148.3
Q ss_pred cCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC
Q 039428 45 HSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG 124 (335)
Q Consensus 45 ~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~ 124 (335)
.+-..+-+++++.++|+.++...+++.+..||...++ ..+++. .+. .-..++++++ +++-.|. ...
T Consensus 60 ~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~------~t~~f~-GH~---~dVlsva~s~-dn~qivS--GSr- 125 (315)
T KOG0279|consen 60 TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE------STRRFV-GHT---KDVLSVAFST-DNRQIVS--GSR- 125 (315)
T ss_pred eccceEecceEEccCCceEEeccccceEEEEEecCCc------EEEEEE-ecC---CceEEEEecC-CCceeec--CCC-
Confidence 4444567899999999987777999999999976554 112343 222 2467999997 5666662 222
Q ss_pred CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-c-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccc
Q 039428 125 NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-N-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~ 202 (335)
+ ..|..||..+......... .. -.-.+-+.|.|+- + +.++-+....|..+|.++..++ ..|..
T Consensus 126 D--kTiklwnt~g~ck~t~~~~---~~-~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~----~~~~g----- 190 (315)
T KOG0279|consen 126 D--KTIKLWNTLGVCKYTIHED---SH-REWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLR----TTFIG----- 190 (315)
T ss_pred c--ceeeeeeecccEEEEEecC---CC-cCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchh----hcccc-----
Confidence 2 3588898876654422211 11 3456778899973 4 6666666788888998876544 12221
Q ss_pred cccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 203 NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
.....|-++++|||.|..+-..+++++-.|++.++ ..+.++ . +.....++|.|+ ++|++-.-..++++.+...
T Consensus 191 h~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k-~lysl~--a---~~~v~sl~fspn-rywL~~at~~sIkIwdl~~ 263 (315)
T KOG0279|consen 191 HSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGK-NLYSLE--A---FDIVNSLCFSPN-RYWLCAATATSIKIWDLES 263 (315)
T ss_pred ccccEEEEEECCCCCEEecCCCCceEEEEEccCCc-eeEecc--C---CCeEeeEEecCC-ceeEeeccCCceEEEeccc
Confidence 12347899999999999998889999999999875 444443 2 233678999885 6666643336688888766
Q ss_pred CcEEEEEeeeecCC----CCCcceEEEE--eCCeEEE
Q 039428 283 GWETASVVAKFNGP----THRVATAATV--KDGRVYL 313 (335)
Q Consensus 283 ~~~~~~~~~~~~~p----~~~~Pt~va~--~~g~lyV 313 (335)
+....++...+.+| ......+++. ++.+||-
T Consensus 264 ~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~ 300 (315)
T KOG0279|consen 264 KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFA 300 (315)
T ss_pred hhhhhhccccccccccccCCcEEEEEEEcCCCcEEEe
Confidence 53333333233233 1122234555 2667775
No 50
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.54 E-value=2.3e-05 Score=76.88 Aligned_cols=197 Identities=18% Similarity=0.234 Sum_probs=131.3
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE-ecCCCCccce
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF-TDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~-~D~~~~~~~~ 129 (335)
-.+++++|||+++.++..+++|-+||...+- . ++++.+.. ....++.+.. +|+..++. -| +.
T Consensus 353 i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf------C---~vTFteHt-s~Vt~v~f~~-~g~~llssSLD------Gt 415 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIATGAEDGKVKVWNTQSGF------C---FVTFTEHT-SGVTAVQFTA-RGNVLLSSSLD------GT 415 (893)
T ss_pred eeeEEECCCCcEEEeccCCCcEEEEeccCce------E---EEEeccCC-CceEEEEEEe-cCCEEEEeecC------Ce
Confidence 3689999999988888889999999854332 2 33333322 3567999996 66666643 23 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-CCeEEEEccC-CcEEEEecCCcccccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-SSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
|..||+....-...... |. ....+-+++||.|.+.++... .-.|++++.+ |+.+.++.. ...| .
T Consensus 416 VRAwDlkRYrNfRTft~--P~--p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG--HEgP--------V 481 (893)
T KOG0291|consen 416 VRAWDLKRYRNFRTFTS--PE--PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG--HEGP--------V 481 (893)
T ss_pred EEeeeecccceeeeecC--CC--ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC--CCCc--------c
Confidence 99999875433222222 21 355677999999998777554 5689999977 444443321 1111 5
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEEcCCCc
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVESSDGW 284 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~~~~~~ 284 (335)
.+++++|+|.++++-+.+..|.+.+.-...+.++.+++.. ..-++++.|+| .+.|+.- .+.+..++...+.
T Consensus 482 s~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~s-----dvl~vsfrPdG~elaVaTl-dgqItf~d~~~~~ 553 (893)
T KOG0291|consen 482 SGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIRS-----DVLAVSFRPDGKELAVATL-DGQITFFDIKEAV 553 (893)
T ss_pred eeeEEccccCeEEeccccceEEEEEeeccCceeeeEeecc-----ceeEEEEcCCCCeEEEEEe-cceEEEEEhhhce
Confidence 7899999998888988998888777765422666676543 24688899998 4777743 1457777665443
No 51
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=98.46 E-value=0.00033 Score=65.86 Aligned_cols=254 Identities=16% Similarity=0.161 Sum_probs=132.9
Q ss_pred cceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeee--eEEeec----------CCcCC--CCcceEEEeCCCC
Q 039428 49 FLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEE--VKLVKE----------DDVVG--NATMGIAVDRPRN 113 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~--~~~~~~----------~~~~~--~~p~Gi~~d~~~g 113 (335)
..|.+++..|+| .+.+. ...+.+..+.. ++....+ ++. ..+... +.+.. ..+.+++.. .+
T Consensus 67 e~p~~~~~lP~G-~~~v~er~~G~l~~i~~-g~~~~~~-~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~~~a~~--~~ 141 (399)
T COG2133 67 EHPWGLARLPDG-VLLVTERPTGRLRLISD-GGSASPP-VSTVPIVLLRGQGGLLDIALSPDFAQGRLVYFGISEP--GG 141 (399)
T ss_pred cCchhheecCCc-eEEEEccCCccEEEecC-CCccccc-ccccceEEeccCCCccceEecccccccceeeeEEEee--cC
Confidence 368999999999 66666 54478877742 2221000 000 001111 11111 346777765 56
Q ss_pred eEEEEEecCCCCccceEEEEECCCCeE----EEEeecCCCccCCCCCCceeECCCCcEEEEeC-------------CCCe
Q 039428 114 RLLVAFTDVLGNKYSALAAYDLSTWKR----LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-------------VSSK 176 (335)
Q Consensus 114 ~l~v~~~D~~~~~~~~v~~~d~~~~~~----~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-------------~~~~ 176 (335)
.+|+++.+ .+.+|+....++ ....+++. ...+.-..|+++|||.|||+-. ..+.
T Consensus 142 ~~~~~n~~-------~~~~~~~g~~~l~~~~~i~~~lP~--~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk 212 (399)
T COG2133 142 GLYVANRV-------AIGRLPGGDTKLSEPKVIFRGIPK--GGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGK 212 (399)
T ss_pred CceEEEEE-------EEEEcCCCccccccccEEeecCCC--CCCcCcccEEECCCCcEEEEeCCCCCcccccCccccccc
Confidence 77876553 366676211111 12233422 1145566899999999999732 2467
Q ss_pred EEEEccCCcEEEEecCCcccccc-ccccccccCeEEEccC-CeEEEEECCCCEE------EEEeCCCCce--e-------
Q 039428 177 IWKVGVEGQLLSIIRSPLFTAKE-WYKNVFGLNGIVYHPD-GFLIVIHMCSGNL------FKIDIRKEEE--E------- 239 (335)
Q Consensus 177 I~~~d~~g~~~~~~~~~~~~~~~-~~~~~~~p~Gia~~~d-g~Lyvad~~~~~v------~~~d~~~~~~--~------- 239 (335)
|++++.++.... +.-+..++ ......+|.|++++|. |.||+++.+...+ .++.....-+ .
T Consensus 213 ~~r~~~a~~~~~---d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~ 289 (399)
T COG2133 213 VLRIDRAGIIPA---DNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNY 289 (399)
T ss_pred eeeeccCccccc---CCCCCCcceEEeccCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCccc
Confidence 777777664432 11121111 2335667999999997 7999999877333 2221111000 0
Q ss_pred -EEEEe--------ccCCc---CCCCCCeEEEcCC-------CcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCc
Q 039428 240 -VKLIE--------LRGGS---SLSLGDGLALLSP-------TKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRV 300 (335)
Q Consensus 240 -~~~~~--------~~g~~---~~~~pdGia~d~~-------g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~ 300 (335)
.+... ..... .-..|-||++-.. +.++|+.-++-.+...+.+.+.+ ....+.+.......
T Consensus 290 ~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~lfV~~hgsw~~~~~~~~g~~~-~~~~~fl~~d~~gR 368 (399)
T COG2133 290 DGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGDLFVGAHGSWPVLRLRPDGNYK-VVLTGFLSGDLGGR 368 (399)
T ss_pred CccccCCCcccccccCCceeeccccccceeEEecCCcCccccCcEEEEeecceeEEEeccCCCcc-eEEEEEEecCCCCc
Confidence 00000 00000 0124789999742 68999965433333333332222 12223333212245
Q ss_pred ceEEEEe-CCeEEEEeccCCC
Q 039428 301 ATAATVK-DGRVYLSHLLGLG 320 (335)
Q Consensus 301 Pt~va~~-~g~lyV~~~~~~~ 320 (335)
|-.|++. +|.|||++..+.|
T Consensus 369 ~~dV~v~~DGallv~~D~~~g 389 (399)
T COG2133 369 PRDVAVAPDGALLVLTDQGDG 389 (399)
T ss_pred ccceEECCCCeEEEeecCCCC
Confidence 6788886 9999998777644
No 52
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.45 E-value=0.00012 Score=65.08 Aligned_cols=202 Identities=14% Similarity=0.139 Sum_probs=117.7
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d 181 (335)
...+++++|+++.||++. +.. ..|+.++.+ |+++..+++.+ +.-|..++.-.+|...++|....+++.+.
T Consensus 87 nvS~LTynp~~rtLFav~-n~p----~~iVElt~~-GdlirtiPL~g----~~DpE~Ieyig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 87 NVSSLTYNPDTRTLFAVT-NKP----AAIVELTKE-GDLIRTIPLTG----FSDPETIEYIGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccceeeCCCcceEEEec-CCC----ceEEEEecC-CceEEEecccc----cCChhHeEEecCCEEEEEehhcceEEEEE
Confidence 367999999888999863 322 569999876 56776677632 67788999988888888999888888765
Q ss_pred --cCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCC-EEEEEeCCCCceeEEEEeccC-Cc--CCCCC
Q 039428 182 --VEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSG-NLFKIDIRKEEEEVKLIELRG-GS--SLSLG 254 (335)
Q Consensus 182 --~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~-~v~~~d~~~~~~~~~~~~~~g-~~--~~~~p 254 (335)
+++.... +.+..+.-......-.+-.|+|+++.+ .||++-..+- .|+.++.....-......... +. -+..-
T Consensus 157 vd~~t~~~~-~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~Dv 235 (316)
T COG3204 157 VDADTTVIS-AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDV 235 (316)
T ss_pred EcCCccEEe-ccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecc
Confidence 4444433 111111111011113467899999976 8888875543 677776443210011000000 00 01235
Q ss_pred CeEEEcCC-CcEEEEecCCCeEEEEEcCCC-cEEEEEeeeecC--CCCCcceEEEEe-CCeEEEE
Q 039428 255 DGLALLSP-TKLVVAGNPYPSARLVESSDG-WETASVVAKFNG--PTHRVATAATVK-DGRVYLS 314 (335)
Q Consensus 255 dGia~d~~-g~l~va~~~~~~~~v~~~~~~-~~~~~~~~~~~~--p~~~~Pt~va~~-~g~lyV~ 314 (335)
.|+.+++. ++|+|-+..+..+..++...+ -....+.+..++ ....+|.+++.+ +|+|||.
T Consensus 236 Sgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 236 SGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred ccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 68888865 678887664444433433221 111112222211 124557899996 8999983
No 53
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.44 E-value=9e-06 Score=69.78 Aligned_cols=154 Identities=15% Similarity=0.115 Sum_probs=96.0
Q ss_pred CCCcceEEEeCCCCeEEEEEecCCCC----ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCC
Q 039428 100 GNATMGIAVDRPRNRLLVAFTDVLGN----KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVS 174 (335)
Q Consensus 100 ~~~p~Gi~~d~~~g~l~v~~~D~~~~----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~ 174 (335)
.++.+.-.+|| +|+.|+..+...+. ....++++- .++++....+ ....+|+++-|.+. .+|+.|+.+
T Consensus 108 knR~NDgkvdP-~Gryy~GtMad~~~~le~~~g~Ly~~~-~~h~v~~i~~------~v~IsNgl~Wd~d~K~fY~iDsln 179 (310)
T KOG4499|consen 108 KNRLNDGKVDP-DGRYYGGTMADFGDDLEPIGGELYSWL-AGHQVELIWN------CVGISNGLAWDSDAKKFYYIDSLN 179 (310)
T ss_pred hcccccCccCC-CCceeeeeeccccccccccccEEEEec-cCCCceeeeh------hccCCccccccccCcEEEEEccCc
Confidence 35667778998 89999865322111 112343332 3333332211 25789999999875 699999999
Q ss_pred CeE--EEEccCCcEE----EEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCC
Q 039428 175 SKI--WKVGVEGQLL----SIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG 248 (335)
Q Consensus 175 ~~I--~~~d~~g~~~----~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~ 248 (335)
..| |.+|-.+..+ .++.-... +| .....|.|+++|.+|+|||+-...++|+++|+..++ .+..+.++-
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~-~~---~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK-~L~eiklPt- 253 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKS-QP---FESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGK-ILLEIKLPT- 253 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccC-CC---cCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCc-EEEEEEcCC-
Confidence 999 5544443221 11111000 11 122359999999999999999999999999999986 666666543
Q ss_pred cCCCCCCeEEEcCC--CcEEEEec
Q 039428 249 SSLSLGDGLALLSP--TKLVVAGN 270 (335)
Q Consensus 249 ~~~~~pdGia~d~~--g~l~va~~ 270 (335)
......++-.. ..+||+.+
T Consensus 254 ---~qitsccFgGkn~d~~yvT~a 274 (310)
T KOG4499|consen 254 ---PQITSCCFGGKNLDILYVTTA 274 (310)
T ss_pred ---CceEEEEecCCCccEEEEEeh
Confidence 12345566544 35777744
No 54
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.42 E-value=0.00021 Score=69.36 Aligned_cols=180 Identities=14% Similarity=0.197 Sum_probs=104.1
Q ss_pred eeeEEcCCCCEEEEE-ecC--CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 52 ETAKWDDVGRRFLVS-FLD--GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~~--~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
..+.|+|+|+.++.. ..+ ..|+.+|..+++ .. .+...++ .....+++|++..|+++. +..+. .
T Consensus 221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~-----~~--~lt~~~g----~~~~~~wSPDG~~La~~~-~~~g~--~ 286 (448)
T PRK04792 221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV-----RE--KVTSFPG----INGAPRFSPDGKKLALVL-SKDGQ--P 286 (448)
T ss_pred cCceECCCCCEEEEEEecCCCcEEEEEECCCCC-----eE--EecCCCC----CcCCeeECCCCCEEEEEE-eCCCC--e
Confidence 478999999866554 333 479999864443 11 1211222 223567888555676543 22222 4
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC--CCCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV--VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~--~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
.|+.+|.++++....... .......+++|||+ ++++.. ....||+++.++...+.+. +.. .
T Consensus 287 ~Iy~~dl~tg~~~~lt~~------~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt---~~g-------~ 350 (448)
T PRK04792 287 EIYVVDIATKALTRITRH------RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT---FEG-------E 350 (448)
T ss_pred EEEEEECCCCCeEECccC------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe---cCC-------C
Confidence 699999998876532211 12344578899986 555432 3468999998754433221 111 1
Q ss_pred ccCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE
Q 039428 206 GLNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA 268 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va 268 (335)
...+.+++||| .|+++...+ .+|+++|++++ ..+.+.. + . . -....+.++|+ ++++
T Consensus 351 ~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g--~~~~lt~-~-~-~--d~~ps~spdG~~I~~~ 410 (448)
T PRK04792 351 QNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG--AMQVLTS-T-R-L--DESPSVAPNGTMVIYS 410 (448)
T ss_pred CCcCeeECCCCCEEEEEEecCCceEEEEEECCCC--CeEEccC-C-C-C--CCCceECCCCCEEEEE
Confidence 13356899999 777766544 37899999887 4444431 1 1 1 11236788885 4444
No 55
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=0.00079 Score=60.08 Aligned_cols=205 Identities=11% Similarity=0.134 Sum_probs=134.0
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.-.++++.++++|.+++++..+..|..+|..++.. +. .+..+.. .+.-+.+-.....+... ....+
T Consensus 14 ~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~----~~---ti~skky---G~~~~~Fth~~~~~i~s--Stk~d-- 79 (311)
T KOG1446|consen 14 NGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ----VK---TINSKKY---GVDLACFTHHSNTVIHS--STKED-- 79 (311)
T ss_pred CCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce----ee---Eeecccc---cccEEEEecCCceEEEc--cCCCC--
Confidence 44678999999999999987788999998765651 21 2222221 22233333224555442 22222
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
..|.-+++.+++.+.. +.+. ....+.+.+.|.+..|++.+...+|..+|...+.-.- .+. ..++
T Consensus 80 ~tIryLsl~dNkylRY--F~GH---~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg----~l~-------~~~~ 143 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRY--FPGH---KKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG----LLN-------LSGR 143 (311)
T ss_pred CceEEEEeecCceEEE--cCCC---CceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce----EEe-------cCCC
Confidence 3588889888877643 3222 4678899999999999999999999999987332110 011 1235
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCC-ceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKE-EEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~-~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
.-.|+||+|-++++-.+++.|..+|.+.- ++..+.+.+.. .....=.+|.+.++|+..+-....+.+.+++.-+|
T Consensus 144 pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~-~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G 219 (311)
T KOG1446|consen 144 PIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD-NDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG 219 (311)
T ss_pred cceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC-CCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC
Confidence 56799999988888888889999999873 33555665532 11334578999999975544332355777776665
No 56
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.40 E-value=0.00028 Score=68.22 Aligned_cols=193 Identities=16% Similarity=0.186 Sum_probs=108.9
Q ss_pred eeeeEEcCCCCEEEEE-ec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 51 CETAKWDDVGRRFLVS-FL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
-.+++|+|+|+.++.. .. ...|+++|..+++ .. .+...++ .....++++++..|+++. +..+.
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~-----~~--~l~~~~g----~~~~~~~SpDG~~l~~~~-s~~g~-- 271 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ-----RE--LVASFRG----INGAPSFSPDGRRLALTL-SRDGN-- 271 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCC-----EE--EeccCCC----CccCceECCCCCEEEEEE-eCCCC--
Confidence 3578999999855544 32 3579999864443 11 1222222 223678888555565542 22222
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEE-eC-CCCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVT-DV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~-d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
..|+++|+++++....... .......++++||+ ++++ +. ....||+++.++...+.+. +. .
T Consensus 272 ~~Iy~~d~~~g~~~~lt~~------~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt---~~-------g 335 (433)
T PRK04922 272 PEIYVMDLGSRQLTRLTNH------FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT---FQ-------G 335 (433)
T ss_pred ceEEEEECCCCCeEECccC------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee---cC-------C
Confidence 4699999998875432211 12234578999986 4444 32 2357999998654333221 11 0
Q ss_pred cccCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE-ec-CCCeEEEE
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA-GN-PYPSARLV 278 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va-~~-~~~~~~v~ 278 (335)
.....++++||| .++++...+ .+|+.+++.++ ..+.+. .+ . ......+.++|+ ++++ +. +...+.++
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g--~~~~Lt-~~-~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~ 408 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG--SVRTLT-PG-S---LDESPSFAPNGSMVLYATREGGRGVLAAV 408 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC--CeEECC-CC-C---CCCCceECCCCCEEEEEEecCCceEEEEE
Confidence 113468999999 777765443 37999999876 344443 22 1 123457888886 3433 32 22335555
Q ss_pred Ec
Q 039428 279 ES 280 (335)
Q Consensus 279 ~~ 280 (335)
..
T Consensus 409 ~~ 410 (433)
T PRK04922 409 ST 410 (433)
T ss_pred EC
Confidence 44
No 57
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.39 E-value=0.00031 Score=67.78 Aligned_cols=182 Identities=14% Similarity=0.162 Sum_probs=106.7
Q ss_pred ceeeeEEcCCCCEEEEE-ec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 50 LCETAKWDDVGRRFLVS-FL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
.-.+++|+|+|+.++.. .. ...|+.++..+++ .. .+...++ ......++|++..|+++ .+..+.
T Consensus 200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~-----~~--~l~~~~~----~~~~~~~SPDG~~La~~-~~~~g~- 266 (429)
T PRK03629 200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA-----VR--QVASFPR----HNGAPAFSPDGSKLAFA-LSKTGS- 266 (429)
T ss_pred ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC-----eE--EccCCCC----CcCCeEECCCCCEEEEE-EcCCCC-
Confidence 35689999999865543 32 3579999864443 11 1222232 22357889855556654 232222
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-E-EEEeC-CCCeEEEEccCCcEEEEecCCcccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-A-YVTDV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-l-yV~d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
..|+.+|.++++....... ........+.|||+ + |+++. ....||+++.++...+.+.. .
T Consensus 267 -~~I~~~d~~tg~~~~lt~~------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~---~------- 329 (429)
T PRK03629 267 -LNLYVMDLASGQIRQVTDG------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITW---E------- 329 (429)
T ss_pred -cEEEEEECCCCCEEEccCC------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeec---C-------
Confidence 3599999998866532211 12345688999996 4 44543 24589999988654432211 0
Q ss_pred ccccCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
.......+++||| .|+++...+ ..|+.+|++++ ..+.+.. . . .-....+.+||+..+.
T Consensus 330 ~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g--~~~~Lt~-~-~---~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 330 GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG--GVQVLTD-T-F---LDETPSIAPNGTMVIY 390 (429)
T ss_pred CCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC--CeEEeCC-C-C---CCCCceECCCCCEEEE
Confidence 1123468899999 666655433 46899999877 4444432 1 1 1124567888863333
No 58
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.38 E-value=0.00043 Score=66.52 Aligned_cols=192 Identities=11% Similarity=0.093 Sum_probs=108.5
Q ss_pred eeeeEEcCCCC--EEEEEec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 51 CETAKWDDVGR--RFLVSFL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 51 pegia~d~~g~--~~~~~~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
--.+.|+|+|+ ++|++.. ...|+++|..+++ .. .+...++ ......++|++..|.++. +..+.
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-----~~--~lt~~~g----~~~~~~~SPDG~~la~~~-~~~g~- 256 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-----KE--KIASSQG----MLVVSDVSKDGSKLLLTM-APKGQ- 256 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-----EE--EEecCCC----cEEeeEECCCCCEEEEEE-ccCCC-
Confidence 34789999997 4445533 4689999975454 11 2322222 222345777555666543 33222
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEe-C-CCCeEEEEccCCcEEEEecCCcccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTD-V-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d-~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
..|+.+|.++++........ ..-....+.|||+ +|++. . ....||+++.++...+.+ .+..
T Consensus 257 -~~Iy~~dl~~g~~~~LT~~~------~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl---t~~g------ 320 (419)
T PRK04043 257 -PDIYLYDTNTKTLTQITNYP------GIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV---VFHG------ 320 (419)
T ss_pred -cEEEEEECCCCcEEEcccCC------CccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC---ccCC------
Confidence 57999999888755332221 1112347899995 66653 2 345899999986654321 1111
Q ss_pred ccccCeEEEccCC-eEEEEECCC--------CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE-ec-C
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCS--------GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA-GN-P 271 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~--------~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va-~~-~ 271 (335)
. .+ ..++||| .|.++.... .+|+.+|++++ ..+.+...+ . -....+.|||+ ++++ .. +
T Consensus 321 -~-~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g--~~~~LT~~~-~----~~~p~~SPDG~~I~f~~~~~~ 390 (419)
T PRK04043 321 -K-NN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSD--YIRRLTANG-V----NQFPRFSSDGGSIMFIKYLGN 390 (419)
T ss_pred -C-cC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCC--CeEECCCCC-C----cCCeEECCCCCEEEEEEccCC
Confidence 0 12 4899999 565444332 48999999887 444443222 1 12367888885 4444 22 2
Q ss_pred CCeEEEEEcC
Q 039428 272 YPSARLVESS 281 (335)
Q Consensus 272 ~~~~~v~~~~ 281 (335)
...+.+++.+
T Consensus 391 ~~~L~~~~l~ 400 (419)
T PRK04043 391 QSALGIIRLN 400 (419)
T ss_pred cEEEEEEecC
Confidence 2235555553
No 59
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.37 E-value=0.00028 Score=69.57 Aligned_cols=195 Identities=12% Similarity=0.178 Sum_probs=126.3
Q ss_pred eeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 51 CETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
-..++|...|+.+.+. ..-|++.+|+-....| |++ ..+.. ...+.++++| +|.+.++.+|. +.
T Consensus 310 I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY---VlK------QQgH~-~~i~~l~YSp-Dgq~iaTG~eD-----gK 373 (893)
T KOG0291|consen 310 ILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY---VLK------QQGHS-DRITSLAYSP-DGQLIATGAED-----GK 373 (893)
T ss_pred eeEEEecccCCEEEEcCCccceEEEEEeeccce---eee------ccccc-cceeeEEECC-CCcEEEeccCC-----Cc
Confidence 3567787778866666 4457877776432332 111 11111 2467899997 78888865443 46
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
|.+||..++.=. +.+..+ -+...++.+..+|+..++.+..|+|..+|... +--+ .|+.| ....-.
T Consensus 374 VKvWn~~SgfC~--vTFteH---ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfR-----Tft~P----~p~Qfs 439 (893)
T KOG0291|consen 374 VKVWNTQSGFCF--VTFTEH---TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFR-----TFTSP----EPIQFS 439 (893)
T ss_pred EEEEeccCceEE--EEeccC---CCceEEEEEEecCCEEEEeecCCeEEeeeecccceee-----eecCC----Cceeee
Confidence 999999877433 223221 45677899999999999999999999999762 2222 35544 234578
Q ss_pred eEEEccCCeEEEEECCC-CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 209 GIVYHPDGFLIVIHMCS-GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~-~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
.+|+||.|.|.++-..+ =.|++.+...++ .+..+ .| +. +-..++.++++|.+.++..-...+++.+.
T Consensus 440 cvavD~sGelV~AG~~d~F~IfvWS~qTGq-llDiL--sG-HE-gPVs~l~f~~~~~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 440 CVAVDPSGELVCAGAQDSFEIFVWSVQTGQ-LLDIL--SG-HE-GPVSGLSFSPDGSLLASGSWDKTVRIWDI 507 (893)
T ss_pred EEEEcCCCCEEEeeccceEEEEEEEeecCe-eeehh--cC-CC-CcceeeEEccccCeEEeccccceEEEEEe
Confidence 99999999766655444 478888888874 33333 23 31 22478999999987777432355666543
No 60
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=98.34 E-value=3.4e-06 Score=62.30 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=52.6
Q ss_pred ceEEEeCCCCeEEEEEecCC------------CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEE
Q 039428 104 MGIAVDRPRNRLLVAFTDVL------------GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVT 170 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~------------~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~ 170 (335)
+++.+++++|.+|.+.+... +...++|++||+++++.....+. ..+|||+++++|+. ++|+
T Consensus 1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~------L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDG------LYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEE------ESSEEEEEE-TTSSEEEEE
T ss_pred CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhC------CCccCeEEEcCCCCEEEEE
Confidence 37888874599999543222 12347899999999987654432 68999999999986 9999
Q ss_pred eCCCCeEEEEccCC
Q 039428 171 DVVSSKIWKVGVEG 184 (335)
Q Consensus 171 d~~~~~I~~~d~~g 184 (335)
++...+|.|+-.+|
T Consensus 75 Et~~~Ri~rywl~G 88 (89)
T PF03088_consen 75 ETGRYRILRYWLKG 88 (89)
T ss_dssp EGGGTEEEEEESSS
T ss_pred eccCceEEEEEEeC
Confidence 99999999987665
No 61
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.33 E-value=0.0006 Score=65.78 Aligned_cols=180 Identities=17% Similarity=0.169 Sum_probs=103.0
Q ss_pred eeeEEcCCCCEEEEE-ec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 52 ETAKWDDVGRRFLVS-FL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.+++|+|+|+.++.. .. ...|+.+|..+++ .. .+...++ .....+++|++..|+++. +..+. .
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-----~~--~l~~~~g----~~~~~~~SPDG~~la~~~-~~~g~--~ 264 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-----RR--VVANFKG----SNSAPAWSPDGRTLAVAL-SRDGN--S 264 (427)
T ss_pred ccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-----EE--EeecCCC----CccceEECCCCCEEEEEE-ccCCC--c
Confidence 478999999866554 32 2469999965444 11 1222222 234678888555665542 22222 4
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EE-EEeC-CCCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AY-VTDV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-ly-V~d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
.|+.+|.+++........ ........++|||+ ++ +++. ....||+++.++...+.+. +.. .
T Consensus 265 ~Iy~~d~~~~~~~~lt~~------~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt---~~g-------~ 328 (427)
T PRK02889 265 QIYTVNADGSGLRRLTQS------SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT---FTG-------S 328 (427)
T ss_pred eEEEEECCCCCcEECCCC------CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe---cCC-------C
Confidence 699999887764422111 12234567999996 44 4442 3568999987754433211 111 1
Q ss_pred ccCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE
Q 039428 206 GLNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA 268 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va 268 (335)
.....+++||| .|+++...+ .+|+++|..++ ..+.+. .+ . ......+.++|+ ++.+
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g--~~~~lt-~~-~---~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG--QVTALT-DT-T---RDESPSFAPNGRYILYA 388 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCC--CeEEcc-CC-C---CccCceECCCCCEEEEE
Confidence 12356899999 666555443 37999998876 333332 12 1 124568889985 4444
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.32 E-value=0.0011 Score=62.75 Aligned_cols=194 Identities=18% Similarity=0.159 Sum_probs=102.3
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
.+++++ ++.+|+...++.|+.+|..+|+. + |.. .+. ....+.+++ ++++|+.+.+ +.|
T Consensus 59 ~~p~v~--~~~v~v~~~~g~v~a~d~~tG~~----~----W~~~~~~---~~~~~p~v~--~~~v~v~~~~------g~l 117 (377)
T TIGR03300 59 LQPAVA--GGKVYAADADGTVVALDAETGKR----L----WRVDLDE---RLSGGVGAD--GGLVFVGTEK------GEV 117 (377)
T ss_pred cceEEE--CCEEEEECCCCeEEEEEccCCcE----e----eeecCCC---CcccceEEc--CCEEEEEcCC------CEE
Confidence 355665 45667776678999999766761 1 321 111 112345665 6899995332 359
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCe
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
+.+|.++|++.+........ ... .++ .++.+|+. ...+.|+.+|++ |+........ .+ .........
T Consensus 118 ~ald~~tG~~~W~~~~~~~~--~~~---p~v-~~~~v~v~-~~~g~l~a~d~~tG~~~W~~~~~---~~--~~~~~~~~s 185 (377)
T TIGR03300 118 IALDAEDGKELWRAKLSSEV--LSP---PLV-ANGLVVVR-TNDGRLTALDAATGERLWTYSRV---TP--ALTLRGSAS 185 (377)
T ss_pred EEEECCCCcEeeeeccCcee--ecC---CEE-ECCEEEEE-CCCCeEEEEEcCCCceeeEEccC---CC--ceeecCCCC
Confidence 99999999988766542210 111 222 24677775 456889999985 5554322110 00 000001112
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCc---C---CCCCCe-EEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGS---S---LSLGDG-LALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~---~---~~~pdG-ia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
.++. ++.+|+.. .+++++.+|+..++ ........... . +...++ ..+ .++.+|+++.. +.+..++...
T Consensus 186 p~~~-~~~v~~~~-~~g~v~ald~~tG~-~~W~~~~~~~~g~~~~~~~~~~~~~p~~-~~~~vy~~~~~-g~l~a~d~~t 260 (377)
T TIGR03300 186 PVIA-DGGVLVGF-AGGKLVALDLQTGQ-PLWEQRVALPKGRTELERLVDVDGDPVV-DGGQVYAVSYQ-GRVAALDLRS 260 (377)
T ss_pred CEEE-CCEEEEEC-CCCEEEEEEccCCC-EeeeeccccCCCCCchhhhhccCCccEE-ECCEEEEEEcC-CEEEEEECCC
Confidence 2333 45666554 56789999987763 22222211100 0 000011 122 25688887552 5677777655
Q ss_pred C
Q 039428 283 G 283 (335)
Q Consensus 283 ~ 283 (335)
+
T Consensus 261 G 261 (377)
T TIGR03300 261 G 261 (377)
T ss_pred C
Confidence 5
No 63
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.32 E-value=0.00031 Score=63.57 Aligned_cols=198 Identities=15% Similarity=0.111 Sum_probs=119.5
Q ss_pred eeEEcCCCCEEEEEec-----CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC--
Q 039428 53 TAKWDDVGRRFLVSFL-----DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN-- 125 (335)
Q Consensus 53 gia~d~~g~~~~~~~~-----~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~-- 125 (335)
--+++++|+++|++.. .|.|-++|.. ..+ +.+. +++. .|..|+-|.+.+++..|.|+|....-+
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~-~~~--~ri~-----E~~s-~GIGPHel~l~pDG~tLvVANGGI~Thpd 125 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAA-RGY--RRIG-----EFPS-HGIGPHELLLMPDGETLVVANGGIETHPD 125 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECc-CCc--EEEe-----EecC-CCcChhhEEEcCCCCEEEEEcCCCccCcc
Confidence 3478999999999932 3689999964 332 1122 2232 235799999998444899976432211
Q ss_pred --c--------cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC-------CeEEEEccCCcEEE
Q 039428 126 --K--------YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS-------SKIWKVGVEGQLLS 188 (335)
Q Consensus 126 --~--------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~-------~~I~~~d~~g~~~~ 188 (335)
+ ...|..+|..+|+++-...++.. ........++++++|.++++.... .-|..++.++. .+
T Consensus 126 ~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~-~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~ 203 (305)
T PF07433_consen 126 SGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD-LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LR 203 (305)
T ss_pred cCceecChhhcCCceEEEecCCCceeeeeecCcc-ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ce
Confidence 0 14577888899988755555322 124567789999999999986543 34445554443 22
Q ss_pred EecCCcccccc--ccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcE
Q 039428 189 IIRSPLFTAKE--WYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKL 265 (335)
Q Consensus 189 ~~~~~~~~~~~--~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l 265 (335)
.+ ..|+ ...-....-.||++++| .+.++....+++..+|..++. .+....+. -.-|++..+++
T Consensus 204 ~~-----~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~-~~~~~~l~------D~cGva~~~~~-- 269 (305)
T PF07433_consen 204 LL-----PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGR-LLGSVPLP------DACGVAPTDDG-- 269 (305)
T ss_pred ec-----cCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCC-EeeccccC------ceeeeeecCCc--
Confidence 21 1111 01111235689999998 677888889999999988873 33333322 13356666655
Q ss_pred EEEecCCCeE
Q 039428 266 VVAGNPYPSA 275 (335)
Q Consensus 266 ~va~~~~~~~ 275 (335)
|+...+.+.+
T Consensus 270 f~~ssG~G~~ 279 (305)
T PF07433_consen 270 FLVSSGQGQL 279 (305)
T ss_pred eEEeCCCccE
Confidence 4444432433
No 64
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.31 E-value=3.6e-05 Score=75.62 Aligned_cols=195 Identities=10% Similarity=0.023 Sum_probs=120.7
Q ss_pred EcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCC----------
Q 039428 56 WDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLG---------- 124 (335)
Q Consensus 56 ~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~---------- 124 (335)
++++|+.++.. ...+.+..+|.. .. ++..+ +. .+ ..|..+.++++++.+|+++.++..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~e-tm---eV~~q--V~-Vd----gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~ 268 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAE-TM---EVAWQ--VM-VD----GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAA 268 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECc-cc---eEEEE--EE-eC----CCcccceECCCCCEEEEeccCcccCcceeeeccc
Confidence 45567644443 445778888853 32 12221 21 12 367889999878889887522210
Q ss_pred C------------------------ccceEEEEECCC-----CeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCC
Q 039428 125 N------------------------KYSALAAYDLST-----WKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVS 174 (335)
Q Consensus 125 ~------------------------~~~~v~~~d~~~-----~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~ 174 (335)
. ..+.|.++|..+ .++...++. ...|+++.++|||+ +|++....
T Consensus 269 e~d~~vvfni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPV------GKsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 269 ERDWVVVFNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPV------PKNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred cCceEEEEchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEEC------CCCccceEECCCCCEEEEeCCCC
Confidence 0 013467777665 234333333 57899999999995 99999999
Q ss_pred CeEEEEccCCcEEEEecCCcccc----ccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCC-------c--eeEE
Q 039428 175 SKIWKVGVEGQLLSIIRSPLFTA----KEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE-------E--EEVK 241 (335)
Q Consensus 175 ~~I~~~d~~g~~~~~~~~~~~~~----~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~-------~--~~~~ 241 (335)
+.|.++|...... .+... +.. -...+.+.+|-..+|+++|+.|++-.-..+|.+.+++.. + ..+.
T Consensus 343 ~tVSVIDv~k~k~-~~~~~-~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~ 420 (635)
T PRK02888 343 PTVTVIDVRKLDD-LFDGK-IKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQ 420 (635)
T ss_pred CcEEEEEChhhhh-hhhcc-CCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCccee
Confidence 9999999864221 11110 000 001234567999999999999999999999999998761 1 0223
Q ss_pred EEecc--CCcCCCCCCeEEEcCCCcEEEEec
Q 039428 242 LIELR--GGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 242 ~~~~~--g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.+++. .++ +..+.|=..+++|+++++-+
T Consensus 421 k~dV~y~pgh-~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 421 KLDVHYQPGH-NHASMGETKEADGKWLVSLN 450 (635)
T ss_pred cccCCCccce-eeecCCCcCCCCCCEEEEcc
Confidence 33321 112 23456666789999888844
No 65
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.31 E-value=0.00068 Score=58.82 Aligned_cols=211 Identities=12% Similarity=0.085 Sum_probs=130.3
Q ss_pred EEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec
Q 039428 42 YQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121 (335)
Q Consensus 42 ~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D 121 (335)
+.+.+...--..+.+..+|+..|.+..+|++..||...-. .. +..+.+. ..+.+.++|.++.|++ +|
T Consensus 77 ~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~-----~q--R~~~~~s----pVn~vvlhpnQteLis--~d 143 (311)
T KOG0315|consen 77 ATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS-----CQ--RNYQHNS----PVNTVVLHPNQTELIS--GD 143 (311)
T ss_pred eEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc-----cc--hhccCCC----CcceEEecCCcceEEe--ec
Confidence 3343333345677899999988888889999999853211 11 1222221 4578899998889999 56
Q ss_pred CCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE-EEEecC-Ccccccc
Q 039428 122 VLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL-LSIIRS-PLFTAKE 199 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~-~~~~~~-~~~~~~~ 199 (335)
..+ .|++||+....-. -.+- |.. ......+++++||.+.++-...|+.|+++.-+.. ...+.- ..|..
T Consensus 144 qsg----~irvWDl~~~~c~--~~li-Pe~-~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a-- 213 (311)
T KOG0315|consen 144 QSG----NIRVWDLGENSCT--HELI-PED-DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA-- 213 (311)
T ss_pred CCC----cEEEEEccCCccc--cccC-CCC-CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec--
Confidence 554 4999998765222 1111 111 3556779999999988888888999998864321 110100 01110
Q ss_pred ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 200 WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.-...--.-++||+..+++-+....++.+..++- ......+.+.. .--.+.+|..||.+.|+....+..+..+
T Consensus 214 ---h~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~--rWvWdc~FS~dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 214 ---HNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQ--RWVWDCAFSADGEYLVTASSDHTARLWD 286 (311)
T ss_pred ---ccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecCC--ceEEeeeeccCccEEEecCCCCceeecc
Confidence 1112334578999988888888888888877764 11222222311 3468899999999888855335555555
Q ss_pred cCC
Q 039428 280 SSD 282 (335)
Q Consensus 280 ~~~ 282 (335)
...
T Consensus 287 ~~~ 289 (311)
T KOG0315|consen 287 LSA 289 (311)
T ss_pred ccc
Confidence 443
No 66
>PRK00178 tolB translocation protein TolB; Provisional
Probab=98.30 E-value=0.00094 Score=64.40 Aligned_cols=193 Identities=18% Similarity=0.210 Sum_probs=108.5
Q ss_pred eeeeEEcCCCCEEE-EEec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 51 CETAKWDDVGRRFL-VSFL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 51 pegia~d~~g~~~~-~~~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
...++|+|+|+.++ ++.. ...|++++..+++ .. .+...++ ......++|++..|++.. +..+.
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~-----~~--~l~~~~g----~~~~~~~SpDG~~la~~~-~~~g~-- 266 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR-----RE--QITNFEG----LNGAPAWSPDGSKLAFVL-SKDGN-- 266 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC-----EE--EccCCCC----CcCCeEECCCCCEEEEEE-ccCCC--
Confidence 46789999998654 4433 2579999865444 11 1221222 223578887555565542 22222
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEE-eC-CCCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVT-DV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~-d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
..|+++|.++++....... ........+++||+ +|++ +. ....||+++.++...+.+. +..
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~------~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt---~~~------- 330 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNH------PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT---FVG------- 330 (430)
T ss_pred ceEEEEECCCCCeEEcccC------CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee---cCC-------
Confidence 4699999998866532211 12234567889985 5554 32 2458999998654433221 110
Q ss_pred cccCeEEEccCC-eEEEEECCCC--EEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEec--CCCeEEEE
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCSG--NLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGN--PYPSARLV 278 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~~--~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~--~~~~~~v~ 278 (335)
......+++||| .|+++....+ .|+++|+.++ ..+.+...+ . .....+.++|+ ++.+.. +...+.++
T Consensus 331 ~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg--~~~~lt~~~-~----~~~p~~spdg~~i~~~~~~~g~~~l~~~ 403 (430)
T PRK00178 331 NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG--SVRILTDTS-L----DESPSVAPNGTMLIYATRQQGRGVLMLV 403 (430)
T ss_pred CCccceEECCCCCEEEEEEccCCceEEEEEECCCC--CEEEccCCC-C----CCCceECCCCCEEEEEEecCCceEEEEE
Confidence 112346899999 7777765443 6999999887 444443211 1 22447888886 434432 11234555
Q ss_pred Ec
Q 039428 279 ES 280 (335)
Q Consensus 279 ~~ 280 (335)
+.
T Consensus 404 ~~ 405 (430)
T PRK00178 404 SI 405 (430)
T ss_pred EC
Confidence 54
No 67
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.27 E-value=0.00031 Score=66.95 Aligned_cols=217 Identities=13% Similarity=0.121 Sum_probs=112.3
Q ss_pred CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeec---CCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCC
Q 039428 61 RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKE---DDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLST 137 (335)
Q Consensus 61 ~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~---~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~ 137 (335)
+.+|+...++.|+.+|..+|+. + |... +.........-.+. ++.+|+...+ +.++.+|+++
T Consensus 161 ~~v~v~~~~g~l~ald~~tG~~----~----W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~------g~v~a~d~~~ 224 (394)
T PRK11138 161 GLVLVHTSNGMLQALNESDGAV----K----WTVNLDVPSLTLRGESAPATA--FGGAIVGGDN------GRVSAVLMEQ 224 (394)
T ss_pred CEEEEECCCCEEEEEEccCCCE----e----eeecCCCCcccccCCCCCEEE--CCEEEEEcCC------CEEEEEEccC
Confidence 3555665678999999777761 1 3211 11100001122333 4678884322 3599999999
Q ss_pred CeEEEEeecCCCcc--CCCCCCceeEC---CCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEE
Q 039428 138 WKRLFLTQLSGKSE--EKSTADDIAVD---AEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVY 212 (335)
Q Consensus 138 ~~~~~~~~~~~~~~--~~~~p~~~~vd---~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~ 212 (335)
|+..+......+.. ......++... .+|.+|+++. .+.++.+|+...... +..+ +. .+..+++
T Consensus 225 G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~g~l~ald~~tG~~~-W~~~-~~---------~~~~~~~ 292 (394)
T PRK11138 225 GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-NGNLVALDLRSGQIV-WKRE-YG---------SVNDFAV 292 (394)
T ss_pred ChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-CCeEEEEECCCCCEE-Eeec-CC---------CccCcEE
Confidence 98776544322110 00001111111 2578998764 579999998643322 2111 11 1334455
Q ss_pred ccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeee
Q 039428 213 HPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAK 292 (335)
Q Consensus 213 ~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~ 292 (335)
. +++||+.+ .+++|+.+|+.+++ ..-........... ..++ .+|.+|+.+.. +.+.+++..+| +++.+
T Consensus 293 ~-~~~vy~~~-~~g~l~ald~~tG~-~~W~~~~~~~~~~~---sp~v-~~g~l~v~~~~-G~l~~ld~~tG----~~~~~ 360 (394)
T PRK11138 293 D-GGRIYLVD-QNDRVYALDTRGGV-ELWSQSDLLHRLLT---APVL-YNGYLVVGDSE-GYLHWINREDG----RFVAQ 360 (394)
T ss_pred E-CCEEEEEc-CCCeEEEEECCCCc-EEEcccccCCCccc---CCEE-ECCEEEEEeCC-CEEEEEECCCC----CEEEE
Confidence 4 67999887 57889999998763 21111111111111 2233 35789988652 55777776655 23333
Q ss_pred ecCCCCCcceEEEEeCCeEEEEecc
Q 039428 293 FNGPTHRVATAATVKDGRVYLSHLL 317 (335)
Q Consensus 293 ~~~p~~~~Pt~va~~~g~lyV~~~~ 317 (335)
...+......+-.+.+++|||....
T Consensus 361 ~~~~~~~~~s~P~~~~~~l~v~t~~ 385 (394)
T PRK11138 361 QKVDSSGFLSEPVVADDKLLIQARD 385 (394)
T ss_pred EEcCCCcceeCCEEECCEEEEEeCC
Confidence 2211111222334568899996543
No 68
>PRK01742 tolB translocation protein TolB; Provisional
Probab=98.26 E-value=0.00059 Score=65.90 Aligned_cols=176 Identities=14% Similarity=0.158 Sum_probs=103.1
Q ss_pred eeeeEEcCCCCEEEEE-ecC--CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 51 CETAKWDDVGRRFLVS-FLD--GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~--~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
-..++|+|+|+.++.. ..+ ..|+.+|..+++ .. .+...++ ....++++|++..|+++ .+..+.
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~-----~~--~l~~~~g----~~~~~~wSPDG~~La~~-~~~~g~-- 271 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGA-----RK--VVASFRG----HNGAPAFSPDGSRLAFA-SSKDGV-- 271 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCc-----eE--EEecCCC----ccCceeECCCCCEEEEE-EecCCc--
Confidence 4689999999866554 322 479999864443 11 1222222 22357888844455554 222222
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEE-eC-CCCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVT-DV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~-d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
..|+.+|.++++....... .......+++|||+ ++++ +. ....||.++.++...+.+..
T Consensus 272 ~~Iy~~d~~~~~~~~lt~~------~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~------------ 333 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTSG------AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGG------------ 333 (429)
T ss_pred EEEEEEECCCCCeEeeccC------CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecC------------
Confidence 3589999987765432211 22345789999996 5544 32 35688999887665443210
Q ss_pred cccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
.+ ...+++||| .|+++.. ..++++|+.++ ..+.+. .. . .-..+.+.|+|++++.
T Consensus 334 ~~-~~~~~SpDG~~ia~~~~--~~i~~~Dl~~g--~~~~lt-~~-~---~~~~~~~sPdG~~i~~ 388 (429)
T PRK01742 334 RG-YSAQISADGKTLVMING--DNVVKQDLTSG--STEVLS-ST-F---LDESPSISPNGIMIIY 388 (429)
T ss_pred CC-CCccCCCCCCEEEEEcC--CCEEEEECCCC--CeEEec-CC-C---CCCCceECCCCCEEEE
Confidence 01 246789999 6666543 56888998876 333332 11 1 1245678999975555
No 69
>PTZ00420 coronin; Provisional
Probab=98.24 E-value=0.0019 Score=64.09 Aligned_cols=216 Identities=9% Similarity=0.049 Sum_probs=120.9
Q ss_pred EcCCCcceeeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 44 YHSPSFLCETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 44 ~~~~~~~pegia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
+.+.......++|+|. +++++++..++.|..||..++...-+.+.+ ......+. ......++++|....++++.+ .
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~-p~~~L~gH-~~~V~sVaf~P~g~~iLaSgS-~ 146 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD-PQCILKGH-KKKISIIDWNPMNYYIMCSSG-F 146 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc-ceEEeecC-CCcEEEEEECCCCCeEEEEEe-C
Confidence 3443445689999997 677766688999999986533210000000 01011111 135678999984444544322 1
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEE-EEecCCcccccccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLL-SIIRSPLFTAKEWY 201 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~-~~~~~~~~~~~~~~ 201 (335)
+ ..|..||.++++....... ......++++++|+++++....+.|..+|+..... ..+.. ...
T Consensus 147 --D--gtIrIWDl~tg~~~~~i~~------~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~g--H~g---- 210 (568)
T PTZ00420 147 --D--SFVNIWDIENEKRAFQINM------PKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHI--HDG---- 210 (568)
T ss_pred --C--CeEEEEECCCCcEEEEEec------CCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEec--ccC----
Confidence 1 3599999998876543322 23456899999999998877888999999875432 21211 000
Q ss_pred ccccccCe---EEEccCC-eEEEEECCC---CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC-CCcEEEEecCCC
Q 039428 202 KNVFGLNG---IVYHPDG-FLIVIHMCS---GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS-PTKLVVAGNPYP 273 (335)
Q Consensus 202 ~~~~~p~G---ia~~~dg-~Lyvad~~~---~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~-~g~l~va~~~~~ 273 (335)
...... ..+++++ .|..+.... ++|..+|+......+..+.+.. . ..+--..+|+ +|.+|+++.+.+
T Consensus 211 --~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~--~~~L~p~~D~~tg~l~lsGkGD~ 285 (568)
T PTZ00420 211 --GKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-A--SAPLIPHYDESTGLIYLIGKGDG 285 (568)
T ss_pred --CceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-C--ccceEEeeeCCCCCEEEEEECCC
Confidence 000011 1234676 444443332 4788888885321444444322 1 1111123344 478999987778
Q ss_pred eEEEEEcCCC
Q 039428 274 SARLVESSDG 283 (335)
Q Consensus 274 ~~~v~~~~~~ 283 (335)
.++++....+
T Consensus 286 tIr~~e~~~~ 295 (568)
T PTZ00420 286 NCRYYQHSLG 295 (568)
T ss_pred eEEEEEccCC
Confidence 8998887654
No 70
>PTZ00421 coronin; Provisional
Probab=98.23 E-value=0.0024 Score=62.64 Aligned_cols=209 Identities=11% Similarity=0.084 Sum_probs=120.6
Q ss_pred ceeeeEEcC-CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDD-VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~-~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.-.+++|+| ++++++++..++.|..||.+++.......+ ......+. ......++++|..++++++.+ . + .
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~--~l~~L~gH-~~~V~~l~f~P~~~~iLaSgs-~--D--g 148 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISD--PIVHLQGH-TKKVGIVSFHPSAMNVLASAG-A--D--M 148 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCc--ceEEecCC-CCcEEEEEeCcCCCCEEEEEe-C--C--C
Confidence 357899999 777777778899999998644321000000 01111111 134678999975445555422 1 1 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCcccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
.|..||.++++....... . ....+.+++.++|++.++.+..+.|..+|+.. +....+.. . .....
T Consensus 149 tVrIWDl~tg~~~~~l~~--h---~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~---H------~~~~~ 214 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKC--H---SDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA---H------ASAKS 214 (493)
T ss_pred EEEEEECCCCeEEEEEcC--C---CCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec---C------CCCcc
Confidence 599999998866533221 1 24567899999999999988899999999864 33322211 0 01113
Q ss_pred CeEEEccCCeEEEEE----CCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcE-EEEecCCCeEEEEEcCC
Q 039428 208 NGIVYHPDGFLIVIH----MCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKL-VVAGNPYPSARLVESSD 282 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad----~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l-~va~~~~~~~~v~~~~~ 282 (335)
..+.+.+++.++++- ...++|..+|+...+.....+.... . ....-..+++++++ |+++.+.+.+++++..+
T Consensus 215 ~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~-~--~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 215 QRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQ-S--SALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred eEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCC-C--CceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 456777776444432 2357888889876421222232211 1 11122356888764 44444456788888765
Q ss_pred C
Q 039428 283 G 283 (335)
Q Consensus 283 ~ 283 (335)
+
T Consensus 292 ~ 292 (493)
T PTZ00421 292 E 292 (493)
T ss_pred C
Confidence 4
No 71
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=0.0038 Score=55.84 Aligned_cols=207 Identities=14% Similarity=0.114 Sum_probs=125.2
Q ss_pred CCCcceeeeEEcCCCC-EEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 46 SPSFLCETAKWDDVGR-RFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 46 ~~~~~pegia~d~~g~-~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
.....++-+.+....+ +++.+ ..+.+|..++..+.++ +. . +++.. ...+.|.+.| .+..++..+
T Consensus 54 skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky----lR---Y--F~GH~-~~V~sL~~sP-~~d~FlS~S--- 119 (311)
T KOG1446|consen 54 SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY----LR---Y--FPGHK-KRVNSLSVSP-KDDTFLSSS--- 119 (311)
T ss_pred cccccccEEEEecCCceEEEccCCCCCceEEEEeecCce----EE---E--cCCCC-ceEEEEEecC-CCCeEEecc---
Confidence 3334455555544433 44444 3467888887654442 21 2 34432 4678999998 456666321
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC---cEEEEecCCccccccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG---QLLSIIRSPLFTAKEW 200 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g---~~~~~~~~~~~~~~~~ 200 (335)
.+ ..|.-||++..+-.....+ ..+.=.|+||+|-++++...+..|..+|... ..... |..+
T Consensus 120 ~D--~tvrLWDlR~~~cqg~l~~-------~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~t-----f~i~-- 183 (311)
T KOG1446|consen 120 LD--KTVRLWDLRVKKCQGLLNL-------SGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTT-----FSIT-- 183 (311)
T ss_pred cC--CeEEeeEecCCCCceEEec-------CCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCcee-----EccC--
Confidence 22 3599999885432222222 2334489999998888877777888888641 11111 1111
Q ss_pred cccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 201 YKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.+....-+.|.|+||| .|.++. .++.++.+|.=.+. ....+.... .....|-...+.||++.++++...+.+.+..
T Consensus 184 ~~~~~ew~~l~FS~dGK~iLlsT-~~s~~~~lDAf~G~-~~~tfs~~~-~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 184 DNDEAEWTDLEFSPDGKSILLST-NASFIYLLDAFDGT-VKSTFSGYP-NAGNLPLSATFTPDSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred CCCccceeeeEEcCCCCEEEEEe-CCCcEEEEEccCCc-EeeeEeecc-CCCCcceeEEECCCCcEEEEecCCCcEEEEE
Confidence 0123457899999999 566554 67778889887663 444554322 1134576788889999888876557787777
Q ss_pred cCCCcE
Q 039428 280 SSDGWE 285 (335)
Q Consensus 280 ~~~~~~ 285 (335)
...+-+
T Consensus 261 ~~tg~~ 266 (311)
T KOG1446|consen 261 LETGKK 266 (311)
T ss_pred cCCCcE
Confidence 766533
No 72
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=98.21 E-value=0.0014 Score=62.72 Aligned_cols=181 Identities=15% Similarity=0.177 Sum_probs=104.7
Q ss_pred eeeeEEcCCCCEEEEE-ecC--CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 51 CETAKWDDVGRRFLVS-FLD--GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~--~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
...++|+|+|+.++.. ... ..|+++|..+++ .. .+...++ ....+++++++..|+++. +..+.
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~-----~~--~~~~~~~----~~~~~~~spDg~~l~~~~-~~~~~-- 257 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ-----RE--KVASFPG----MNGAPAFSPDGSKLAVSL-SKDGN-- 257 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC-----EE--EeecCCC----CccceEECCCCCEEEEEE-CCCCC--
Confidence 3467899999976665 322 579999865453 11 1221222 234578887555676642 22222
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEE-EeC-CCCeEEEEccCCcEEEEecCCccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYV-TDV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV-~d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
..|+.+|..+++....... ........+.+||+ +++ ++. ....||+++.++...+.+. +. .
T Consensus 258 ~~i~~~d~~~~~~~~l~~~------~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~---~~-------~ 321 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNG------PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT---FR-------G 321 (417)
T ss_pred ccEEEEECCCCCEEECCCC------CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee---cC-------C
Confidence 3599999988765422211 11223457788886 544 332 2458999998765433221 00 1
Q ss_pred cccCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA 268 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va 268 (335)
.....++++||| .++++.... .+|+.+|+.++ ..+.+.... . .....+.++|+ |+++
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~--~~~~l~~~~-~----~~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG--GERVLTDTG-L----DESPSFAPNGRMILYA 382 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC--CeEEccCCC-C----CCCceECCCCCEEEEE
Confidence 224577999999 677766543 38999999876 445443221 1 23456778875 4444
No 73
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.19 E-value=1.9e-06 Score=49.32 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=25.6
Q ss_pred CCCCCceeECCCCcEEEEeCCCCeEEEE
Q 039428 153 KSTADDIAVDAEGNAYVTDVVSSKIWKV 180 (335)
Q Consensus 153 ~~~p~~~~vd~~G~lyV~d~~~~~I~~~ 180 (335)
+..|.|+++|++|++||+|+.+++|+++
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3579999999999999999999999986
No 74
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=98.18 E-value=0.00036 Score=64.86 Aligned_cols=168 Identities=17% Similarity=0.222 Sum_probs=98.2
Q ss_pred CcceEEEeCCCCeEEEEEecCCC-CccceEEEEECCC--C---eEE--EEeecCCC-ccCC----CCCCceeECCCCcEE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLG-NKYSALAAYDLST--W---KRL--FLTQLSGK-SEEK----STADDIAVDAEGNAY 168 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~-~~~~~v~~~d~~~--~---~~~--~~~~~~~~-~~~~----~~p~~~~vd~~G~ly 168 (335)
.-.||.+++.++++|+. +|... ....+++.++... + .+. ....+..+ +..+ .-+.+|++.++|.+|
T Consensus 21 GlSgl~~~~~~~~~~av-SD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~~ 99 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAV-SDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSFW 99 (326)
T ss_pred cEeeEEEeCCCCEEEEE-ECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCEE
Confidence 45799999657777776 56543 1113466555432 1 111 11222221 1101 145589998899999
Q ss_pred EEeCCC------CeEEEEccCCcEEEEecCCc-ccc-c---cccccccccCeEEEccCC-eEEEEECCC-----------
Q 039428 169 VTDVVS------SKIWKVGVEGQLLSIIRSPL-FTA-K---EWYKNVFGLNGIVYHPDG-FLIVIHMCS----------- 225 (335)
Q Consensus 169 V~d~~~------~~I~~~d~~g~~~~~~~~~~-~~~-~---~~~~~~~~p~Gia~~~dg-~Lyvad~~~----------- 225 (335)
|++... ++|++++++|+....+.-+. +.. . .....-.+..||++++|| .||++....
T Consensus 100 is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~ 179 (326)
T PF13449_consen 100 ISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANPD 179 (326)
T ss_pred EEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccccc
Confidence 999999 99999999988765432111 110 0 112233468999999999 488765432
Q ss_pred ----CEEEEEeCCCCceeE--EEEeccCC---cCCCCCCeEEEcCCCcEEEEec
Q 039428 226 ----GNLFKIDIRKEEEEV--KLIELRGG---SSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 226 ----~~v~~~d~~~~~~~~--~~~~~~g~---~~~~~pdGia~d~~g~l~va~~ 270 (335)
-+|+++|+...+... ..+.+..- .....+..++..++++++|-+.
T Consensus 180 ~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER 233 (326)
T PF13449_consen 180 NGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLER 233 (326)
T ss_pred cCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEc
Confidence 478899987631012 22333210 0123466677778888888844
No 75
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.17 E-value=0.0021 Score=60.82 Aligned_cols=194 Identities=18% Similarity=0.154 Sum_probs=100.4
Q ss_pred eeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 53 TAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 53 gia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
+++++ ++.+|+...++.|+.+|..+|+ ++ |.... .+.......++ ++.+|+...+ ..|+.
T Consensus 100 ~p~v~--~~~v~v~~~~g~l~ald~~tG~----~~----W~~~~--~~~~~~~p~v~--~~~v~v~~~~------g~l~a 159 (377)
T TIGR03300 100 GVGAD--GGLVFVGTEKGEVIALDAEDGK----EL----WRAKL--SSEVLSPPLVA--NGLVVVRTND------GRLTA 159 (377)
T ss_pred ceEEc--CCEEEEEcCCCEEEEEECCCCc----Ee----eeecc--CceeecCCEEE--CCEEEEECCC------CeEEE
Confidence 45554 4456666567899999975665 11 32111 11011122333 5788885322 35999
Q ss_pred EECCCCeEEEEeecCCCccCC-CCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccccccc---cccccc
Q 039428 133 YDLSTWKRLFLTQLSGKSEEK-STADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWY---KNVFGL 207 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~-~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~---~~~~~p 207 (335)
+|+++|+.++......+.... ....-+.. +|.+|+. ...+.++.+|+. |+...... +..+... ......
T Consensus 160 ~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~-~~~g~v~ald~~tG~~~W~~~---~~~~~g~~~~~~~~~~ 233 (377)
T TIGR03300 160 LDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVG-FAGGKLVALDLQTGQPLWEQR---VALPKGRTELERLVDV 233 (377)
T ss_pred EEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEE-CCCCEEEEEEccCCCEeeeec---cccCCCCCchhhhhcc
Confidence 999999888665442211000 11112322 3567765 456799999975 54432110 1100000 000000
Q ss_pred -CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 208 -NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 208 -~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
....+. ++.+|++. .++.++.+|++.++ ....... + ....++++ ++++|++.. .+.+..++..++
T Consensus 234 ~~~p~~~-~~~vy~~~-~~g~l~a~d~~tG~-~~W~~~~-~-----~~~~p~~~-~~~vyv~~~-~G~l~~~d~~tG 299 (377)
T TIGR03300 234 DGDPVVD-GGQVYAVS-YQGRVAALDLRSGR-VLWKRDA-S-----SYQGPAVD-DNRLYVTDA-DGVVVALDRRSG 299 (377)
T ss_pred CCccEEE-CCEEEEEE-cCCEEEEEECCCCc-EEEeecc-C-----CccCceEe-CCEEEEECC-CCeEEEEECCCC
Confidence 112233 56888876 46789999998763 2222221 1 12334444 478888854 256777777655
No 76
>PRK03629 tolB translocation protein TolB; Provisional
Probab=98.17 E-value=0.0017 Score=62.69 Aligned_cols=156 Identities=15% Similarity=0.132 Sum_probs=90.8
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC--CCCeEEE
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV--VSSKIWK 179 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~--~~~~I~~ 179 (335)
....+++|++..|..+ ....+. ..|+.+|.++++........ ......+++|||+ ++++.. ....||.
T Consensus 201 ~~~p~wSPDG~~la~~-s~~~g~--~~i~i~dl~~G~~~~l~~~~------~~~~~~~~SPDG~~La~~~~~~g~~~I~~ 271 (429)
T PRK03629 201 LMSPAWSPDGSKLAYV-TFESGR--SALVIQTLANGAVRQVASFP------RHNGAPAFSPDGSKLAFALSKTGSLNLYV 271 (429)
T ss_pred eeeeEEcCCCCEEEEE-EecCCC--cEEEEEECCCCCeEEccCCC------CCcCCeEECCCCCEEEEEEcCCCCcEEEE
Confidence 4578888854445443 222222 46999999888655333331 1233589999996 666533 2347999
Q ss_pred EccCCcEEEEecCCccccccccccccccCeEEEccCC-eEE-EEECC-CCEEEEEeCCCCceeEEEEeccCCcCCCCCCe
Q 039428 180 VGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLI-VIHMC-SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDG 256 (335)
Q Consensus 180 ~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Ly-vad~~-~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdG 256 (335)
+|.+++..+.+... .......+++||| .|+ +++.. ..+||+++++++ ..+.+...+ .....
T Consensus 272 ~d~~tg~~~~lt~~----------~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g--~~~~lt~~~----~~~~~ 335 (429)
T PRK03629 272 MDLASGQIRQVTDG----------RSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG--APQRITWEG----SQNQD 335 (429)
T ss_pred EECCCCCEEEccCC----------CCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC--CeEEeecCC----CCccC
Confidence 99886554422111 1124678999999 564 44432 348999999876 444443322 12345
Q ss_pred EEEcCCCc-EEEEec--CCCeEEEEEcCCC
Q 039428 257 LALLSPTK-LVVAGN--PYPSARLVESSDG 283 (335)
Q Consensus 257 ia~d~~g~-l~va~~--~~~~~~v~~~~~~ 283 (335)
..+.++|+ ++++.. +...+.+++...+
T Consensus 336 ~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 336 ADVSSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred EEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 77888886 333322 2234666766544
No 77
>PRK05137 tolB translocation protein TolB; Provisional
Probab=98.16 E-value=0.0016 Score=63.02 Aligned_cols=187 Identities=11% Similarity=0.114 Sum_probs=103.7
Q ss_pred CCEEEEEecC------CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEE
Q 039428 60 GRRFLVSFLD------GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAY 133 (335)
Q Consensus 60 g~~~~~~~~~------~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~ 133 (335)
.++.|++... .+|+.+|. ++.. .. .+.... ......+++|++..|+.+ .+..+. ..|+++
T Consensus 166 ~~iafv~~~~~~~~~~~~l~~~d~-dg~~----~~---~lt~~~---~~v~~p~wSpDG~~lay~-s~~~g~--~~i~~~ 231 (435)
T PRK05137 166 TRIVYVAESGPKNKRIKRLAIMDQ-DGAN----VR---YLTDGS---SLVLTPRFSPNRQEITYM-SYANGR--PRVYLL 231 (435)
T ss_pred CeEEEEEeeCCCCCcceEEEEECC-CCCC----cE---EEecCC---CCeEeeEECCCCCEEEEE-EecCCC--CEEEEE
Confidence 3566666222 37888874 4542 11 222211 134567788754455443 222222 469999
Q ss_pred ECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC--CCCeEEEEccCCcEEEEecCCccccccccccccccCeE
Q 039428 134 DLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV--VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~--~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
|+++++........ ......++.|||+ ++++-. .+..||++|.+++..+.+... .......
T Consensus 232 dl~~g~~~~l~~~~------g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~----------~~~~~~~ 295 (435)
T PRK05137 232 DLETGQRELVGNFP------GMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDS----------PAIDTSP 295 (435)
T ss_pred ECCCCcEEEeecCC------CcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCC----------CCccCce
Confidence 99988665333221 1234678999996 555533 345799999887655432110 0113457
Q ss_pred EEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEec--CCCeEEEEEcCC
Q 039428 211 VYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGN--PYPSARLVESSD 282 (335)
Q Consensus 211 a~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~--~~~~~~v~~~~~ 282 (335)
+++||| +|+++... ..+|+++|.+++ ..+.+...+.. -....+.++|+ ++++.. +...+.+++...
T Consensus 296 ~~spDG~~i~f~s~~~g~~~Iy~~d~~g~--~~~~lt~~~~~----~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 296 SYSPDGSQIVFESDRSGSPQLYVMNADGS--NPRRISFGGGR----YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred eEcCCCCEEEEEECCCCCCeEEEEECCCC--CeEEeecCCCc----ccCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 999999 66655433 358999999876 44544322211 23467888885 444432 223466666543
No 78
>PRK04792 tolB translocation protein TolB; Provisional
Probab=98.12 E-value=0.0021 Score=62.49 Aligned_cols=155 Identities=14% Similarity=0.154 Sum_probs=89.9
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCC--CCeEEEE
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVV--SSKIWKV 180 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~--~~~I~~~ 180 (335)
....++|++..|+.+. +..+. ..|+.+|.++++........ ......+++|||+ ++++... +..||++
T Consensus 221 ~~p~wSPDG~~La~~s-~~~g~--~~L~~~dl~tg~~~~lt~~~------g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~ 291 (448)
T PRK04792 221 MSPAWSPDGRKLAYVS-FENRK--AEIFVQDIYTQVREKVTSFP------GINGAPRFSPDGKKLALVLSKDGQPEIYVV 291 (448)
T ss_pred cCceECCCCCEEEEEE-ecCCC--cEEEEEECCCCCeEEecCCC------CCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence 4567887555555432 22222 46999999988654332221 1223578999996 6655333 3479999
Q ss_pred ccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeE
Q 039428 181 GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGL 257 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGi 257 (335)
|.+++..+.+... .......+++||| +|+++... ..+||+++++++ ..+.+...+ . ...+.
T Consensus 292 dl~tg~~~~lt~~----------~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g--~~~~Lt~~g-~---~~~~~ 355 (448)
T PRK04792 292 DIATKALTRITRH----------RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASG--KVSRLTFEG-E---QNLGG 355 (448)
T ss_pred ECCCCCeEECccC----------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCC--CEEEEecCC-C---CCcCe
Confidence 9887654432111 1124567899999 67665432 458999999876 444443223 1 12346
Q ss_pred EEcCCCc-EEEEecCC--CeEEEEEcCCC
Q 039428 258 ALLSPTK-LVVAGNPY--PSARLVESSDG 283 (335)
Q Consensus 258 a~d~~g~-l~va~~~~--~~~~v~~~~~~ 283 (335)
++.++|+ ++++.... ..+.+++...+
T Consensus 356 ~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 356 SITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred eECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 8888885 55553322 24555665544
No 79
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.12 E-value=0.0016 Score=63.34 Aligned_cols=207 Identities=16% Similarity=0.125 Sum_probs=128.4
Q ss_pred CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 46 SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
+....-.+++|.++|..++....+.+|..||..+... .+ +.+.... +..+.+++++ .+++++...+.
T Consensus 201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~---~~---~~l~gH~---~~v~~~~f~p-~g~~i~Sgs~D--- 267 (456)
T KOG0266|consen 201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGR---NL---KTLKGHS---TYVTSVAFSP-DGNLLVSGSDD--- 267 (456)
T ss_pred ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCe---EE---EEecCCC---CceEEEEecC-CCCEEEEecCC---
Confidence 3344567999999998665558889999998633321 11 1222221 3568999998 56777743221
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEE---EEecCCccccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLL---SIIRSPLFTAKEWYK 202 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~---~~~~~~~~~~~~~~~ 202 (335)
..|..||.++++....... . ...-+.+++.++|+.+++.+..+.|..+|..+... ..+......
T Consensus 268 --~tvriWd~~~~~~~~~l~~--h---s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~------ 334 (456)
T KOG0266|consen 268 --GTVRIWDVRTGECVRKLKG--H---SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS------ 334 (456)
T ss_pred --CcEEEEeccCCeEEEeeec--c---CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC------
Confidence 4699999999877644332 1 34567799999999888888899999999986652 211111000
Q ss_pred cccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 203 NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
. -..-++++|++..+++...++.+...|+.... .+..+...... ............|.+.+++.....+.+.....
T Consensus 335 -~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s 410 (456)
T KOG0266|consen 335 -A-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK-SVGTYTGHSNL-VRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSS 410 (456)
T ss_pred -C-ceeEEEECCCCcEEEEecCCCeEEEEEccCCc-ceeeecccCCc-ceeEecccccCCCCeEEEEeCCceEEEEeCCc
Confidence 0 24789999999555566677777777877653 33333311100 01122233345677777766556677766553
No 80
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=0.00059 Score=57.84 Aligned_cols=191 Identities=16% Similarity=0.139 Sum_probs=115.3
Q ss_pred CCCcceeeeEEcCCCCEEEEE--ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 46 SPSFLCETAKWDDVGRRFLVS--FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~--~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
....+.+|+-++. |+++..+ .....|.++|..+++ ++.++ -+..+.. -..||..- .+.+|..+- .
T Consensus 43 Ds~sfTQGL~~~~-g~i~esTG~yg~S~ir~~~L~~gq---~~~s~--~l~~~~~---FgEGit~~--gd~~y~LTw--~ 109 (262)
T COG3823 43 DSTSFTQGLEYLD-GHILESTGLYGFSKIRVSDLTTGQ---EIFSE--KLAPDTV---FGEGITKL--GDYFYQLTW--K 109 (262)
T ss_pred chhhhhcceeeeC-CEEEEeccccccceeEEEeccCce---EEEEe--ecCCccc---cccceeec--cceEEEEEe--c
Confidence 3455788998875 3544444 334679999865455 11221 2211222 23577664 688998642 1
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc----EEEEecCCcccccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ----LLSIIRSPLFTAKE 199 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~----~~~~~~~~~~~~~~ 199 (335)
. ..-++||+++-+..-....+ ..-++++-|.+ +++.+| ++..++.-||+.- .+.+-.++.
T Consensus 110 e---gvaf~~d~~t~~~lg~~~y~------GeGWgLt~d~~-~Limsd-GsatL~frdP~tfa~~~~v~VT~~g~----- 173 (262)
T COG3823 110 E---GVAFKYDADTLEELGRFSYE------GEGWGLTSDDK-NLIMSD-GSATLQFRDPKTFAELDTVQVTDDGV----- 173 (262)
T ss_pred c---ceeEEEChHHhhhhcccccC------CcceeeecCCc-ceEeeC-CceEEEecCHHHhhhcceEEEEECCe-----
Confidence 1 23678888775544222232 22356776544 477765 4567777777631 111111110
Q ss_pred ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCC--------cCCCCCCeEEEcCCC-cEEEEec
Q 039428 200 WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG--------SSLSLGDGLALLSPT-KLVVAGN 270 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~--------~~~~~pdGia~d~~g-~l~va~~ 270 (335)
.....|-+.+- ||.||..-..+.+|.|+++++++ .+..+++++= .....+.|+|.++++ ++|+++-
T Consensus 174 ---pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr-V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 174 ---PVSKLNELEWV-DGELYANVWQTTRIARIDPDSGR-VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred ---ecccccceeee-ccEEEEeeeeecceEEEcCCCCc-EEEEEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 11237888888 89999888899999999999985 6666665440 113468999999986 8999943
No 81
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.09 E-value=0.0048 Score=53.94 Aligned_cols=195 Identities=21% Similarity=0.139 Sum_probs=106.1
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEE
Q 039428 55 KWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAY 133 (335)
Q Consensus 55 a~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~ 133 (335)
++..+ +.+|+...++.|+.+|..+|+ ++ |.. .++.. .. ...++ ++++|+...+ +.|+.+
T Consensus 32 ~~~~~-~~v~~~~~~~~l~~~d~~tG~----~~----W~~~~~~~~-~~--~~~~~--~~~v~v~~~~------~~l~~~ 91 (238)
T PF13360_consen 32 AVPDG-GRVYVASGDGNLYALDAKTGK----VL----WRFDLPGPI-SG--APVVD--GGRVYVGTSD------GSLYAL 91 (238)
T ss_dssp EEEET-TEEEEEETTSEEEEEETTTSE----EE----EEEECSSCG-GS--GEEEE--TTEEEEEETT------SEEEEE
T ss_pred EEEeC-CEEEEEcCCCEEEEEECCCCC----EE----EEeeccccc-cc--eeeec--ccccccccce------eeeEec
Confidence 44334 455555678999999966675 12 221 12211 11 13444 6899996532 359999
Q ss_pred ECCCCeEEEEe-ecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccc---cccccccC
Q 039428 134 DLSTWKRLFLT-QLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEW---YKNVFGLN 208 (335)
Q Consensus 134 d~~~~~~~~~~-~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~---~~~~~~p~ 208 (335)
|.++|++.+.. ....+......+...+++ ++.+|+... ++.|+.+|++ |+.+..... ..+.. .......+
T Consensus 92 d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~l~~~d~~tG~~~w~~~~---~~~~~~~~~~~~~~~~ 166 (238)
T PF13360_consen 92 DAKTGKVLWSIYLTSSPPAGVRSSSSPAVD-GDRLYVGTS-SGKLVALDPKTGKLLWKYPV---GEPRGSSPISSFSDIN 166 (238)
T ss_dssp ETTTSCEEEEEEE-SSCTCSTB--SEEEEE-TTEEEEEET-CSEEEEEETTTTEEEEEEES---STT-SS--EEEETTEE
T ss_pred ccCCcceeeeeccccccccccccccCceEe-cCEEEEEec-cCcEEEEecCCCcEEEEeec---CCCCCCcceeeecccc
Confidence 99999988764 322111112233445554 345777654 7899999976 555432211 11000 00001122
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
+-.+..++.+|++..... +..+|...+ ... +... ...+.......++.||+.+ ..+.+..++...+
T Consensus 167 ~~~~~~~~~v~~~~~~g~-~~~~d~~tg--~~~-w~~~----~~~~~~~~~~~~~~l~~~~-~~~~l~~~d~~tG 232 (238)
T PF13360_consen 167 GSPVISDGRVYVSSGDGR-VVAVDLATG--EKL-WSKP----ISGIYSLPSVDGGTLYVTS-SDGRLYALDLKTG 232 (238)
T ss_dssp EEEECCTTEEEEECCTSS-EEEEETTTT--EEE-EEEC----SS-ECECEECCCTEEEEEE-TTTEEEEEETTTT
T ss_pred cceEEECCEEEEEcCCCe-EEEEECCCC--CEE-EEec----CCCccCCceeeCCEEEEEe-CCCEEEEEECCCC
Confidence 333333568898875554 777798887 333 3322 1224453444567888887 3477888887765
No 82
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.08 E-value=0.0041 Score=60.03 Aligned_cols=197 Identities=15% Similarity=0.160 Sum_probs=105.2
Q ss_pred eeeEEcCCCC---EEEEEec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 52 ETAKWDDVGR---RFLVSFL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 52 egia~d~~g~---~~~~~~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
..++|+|+|+ ++|++.. ...|+..+..+++. . ++...++ .....+++|++..|..+ .+..+.
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-----~--~lt~~~g----~~~~p~wSPDG~~Laf~-s~~~g~- 254 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-----K--KILALQG----NQLMPTFSPRKKLLAFI-SDRYGN- 254 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCCCc-----e--EeecCCC----CccceEECCCCCEEEEE-ECCCCC-
Confidence 4679999997 3456633 35799998654441 1 2322333 23456788844455543 333222
Q ss_pred cceEEE--EECCCC---eEEEEeecCCCccCCCCCCceeECCCCc-EE-EEeC-CCCeEEEEccC--CcEEEEecCCccc
Q 039428 127 YSALAA--YDLSTW---KRLFLTQLSGKSEEKSTADDIAVDAEGN-AY-VTDV-VSSKIWKVGVE--GQLLSIIRSPLFT 196 (335)
Q Consensus 127 ~~~v~~--~d~~~~---~~~~~~~~~~~~~~~~~p~~~~vd~~G~-ly-V~d~-~~~~I~~~d~~--g~~~~~~~~~~~~ 196 (335)
..++. +|.+++ +....... . .......+++|||+ ++ +++. ....||+++.+ ++..+.+.. .
T Consensus 255 -~di~~~~~~~~~g~~g~~~~lt~~----~-~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~---~ 325 (428)
T PRK01029 255 -PDLFIQSFSLETGAIGKPRRLLNE----A-FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK---K 325 (428)
T ss_pred -cceeEEEeecccCCCCcceEeecC----C-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc---C
Confidence 12444 565542 22221111 0 12234578999996 44 4443 23578988764 232222211 0
Q ss_pred cccccccccccCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE-e-c
Q 039428 197 AKEWYKNVFGLNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA-G-N 270 (335)
Q Consensus 197 ~~~~~~~~~~p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va-~-~ 270 (335)
.......+++||| .|+++... ..+|+++|+.++ ..+.+.... .......+.+||+ |+++ . .
T Consensus 326 -------~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g--~~~~Lt~~~----~~~~~p~wSpDG~~L~f~~~~~ 392 (428)
T PRK01029 326 -------YRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG--RDYQLTTSP----ENKESPSWAIDSLHLVYSAGNS 392 (428)
T ss_pred -------CCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC--CeEEccCCC----CCccceEECCCCCEEEEEECCC
Confidence 1123567899999 67655443 358999999887 444443211 1245678888885 4444 2 2
Q ss_pred CCCeEEEEEcCCC
Q 039428 271 PYPSARLVESSDG 283 (335)
Q Consensus 271 ~~~~~~v~~~~~~ 283 (335)
+...+.+++.+.+
T Consensus 393 g~~~L~~vdl~~g 405 (428)
T PRK01029 393 NESELYLISLITK 405 (428)
T ss_pred CCceEEEEECCCC
Confidence 2245666665443
No 83
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.06 E-value=0.0036 Score=59.68 Aligned_cols=187 Identities=16% Similarity=0.112 Sum_probs=97.4
Q ss_pred EEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeE
Q 039428 62 RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKR 140 (335)
Q Consensus 62 ~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~ 140 (335)
.+|+...++.|+.+|..+|+. .|.. .++. ......+. ++.+|+...+ +.|+.+|+++|++
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~--------~W~~~~~~~---~~ssP~v~--~~~v~v~~~~------g~l~ald~~tG~~ 182 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEV--------AWQTKVAGE---ALSRPVVS--DGLVLVHTSN------GMLQALNESDGAV 182 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCC--------cccccCCCc---eecCCEEE--CCEEEEECCC------CEEEEEEccCCCE
Confidence 444554567899998766651 1321 1111 11122343 5889984322 3599999999999
Q ss_pred EEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccccccccc---ccc-cCeEEEccC
Q 039428 141 LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKN---VFG-LNGIVYHPD 215 (335)
Q Consensus 141 ~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~---~~~-p~Gia~~~d 215 (335)
++..+...+..........+++ +|.+|+. ...+.++.+|++ |+..... + +..+..... ... ....++. +
T Consensus 183 ~W~~~~~~~~~~~~~~~sP~v~-~~~v~~~-~~~g~v~a~d~~~G~~~W~~--~-~~~~~~~~~~~~~~~~~~sP~v~-~ 256 (394)
T PRK11138 183 KWTVNLDVPSLTLRGESAPATA-FGGAIVG-GDNGRVSAVLMEQGQLIWQQ--R-ISQPTGATEIDRLVDVDTTPVVV-G 256 (394)
T ss_pred eeeecCCCCcccccCCCCCEEE-CCEEEEE-cCCCEEEEEEccCChhhhee--c-cccCCCccchhcccccCCCcEEE-C
Confidence 8776553221000001112232 3567776 456788888876 4432211 0 110000000 000 0111233 6
Q ss_pred CeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 216 GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 216 g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
+.+|++.. ++.++.+|+..++ . .+... +..+..++++ ++++|+.+.. +.+..++..++
T Consensus 257 ~~vy~~~~-~g~l~ald~~tG~-~--~W~~~----~~~~~~~~~~-~~~vy~~~~~-g~l~ald~~tG 314 (394)
T PRK11138 257 GVVYALAY-NGNLVALDLRSGQ-I--VWKRE----YGSVNDFAVD-GGRIYLVDQN-DRVYALDTRGG 314 (394)
T ss_pred CEEEEEEc-CCeEEEEECCCCC-E--EEeec----CCCccCcEEE-CCEEEEEcCC-CeEEEEECCCC
Confidence 78998774 6789999998873 2 23211 1223345554 5788988642 56777777655
No 84
>PRK02889 tolB translocation protein TolB; Provisional
Probab=98.05 E-value=0.0028 Score=61.22 Aligned_cols=188 Identities=13% Similarity=0.097 Sum_probs=103.7
Q ss_pred CCEEEEEec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCC
Q 039428 60 GRRFLVSFL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLST 137 (335)
Q Consensus 60 g~~~~~~~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~ 137 (335)
+++.|++.. ..+|+.+|. ++..+ . ++.... ......+++|++..|+.+ .+..+. ..|+.+|.++
T Consensus 164 ~~iayv~~~~~~~~L~~~D~-dG~~~----~--~l~~~~----~~v~~p~wSPDG~~la~~-s~~~~~--~~I~~~dl~~ 229 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDA-DGQNA----Q--SALSSP----EPIISPAWSPDGTKLAYV-SFESKK--PVVYVHDLAT 229 (427)
T ss_pred cEEEEEEccCCccEEEEECC-CCCCc----e--EeccCC----CCcccceEcCCCCEEEEE-EccCCC--cEEEEEECCC
Confidence 566677622 246888874 45411 1 122111 133567888855555553 322222 4699999998
Q ss_pred CeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC--CCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEcc
Q 039428 138 WKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV--VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHP 214 (335)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~--~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~ 214 (335)
++........ ......++.|||+ ++++-. ....||.+|.+++..+.+... .......+++|
T Consensus 230 g~~~~l~~~~------g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~----------~~~~~~~~wSp 293 (427)
T PRK02889 230 GRRRVVANFK------GSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQS----------SGIDTEPFFSP 293 (427)
T ss_pred CCEEEeecCC------CCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCC----------CCCCcCeEEcC
Confidence 8665333221 1223688999985 655432 345799999876654422110 01134568999
Q ss_pred CC-eEEEE-EC-CCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcE-EEEec--CCCeEEEEEcCCC
Q 039428 215 DG-FLIVI-HM-CSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKL-VVAGN--PYPSARLVESSDG 283 (335)
Q Consensus 215 dg-~Lyva-d~-~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l-~va~~--~~~~~~v~~~~~~ 283 (335)
|| +|+++ +. +..+||+++.+++ ..+.+...+.. ....++.++|+. +.+.. +...+.+++...+
T Consensus 294 DG~~l~f~s~~~g~~~Iy~~~~~~g--~~~~lt~~g~~----~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 294 DGRSIYFTSDRGGAPQIYRMPASGG--AAQRVTFTGSY----NTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CCCEEEEEecCCCCcEEEEEECCCC--ceEEEecCCCC----cCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 99 66654 32 3458999998776 34444333311 234678888863 33322 1124666766544
No 85
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=98.03 E-value=1e-05 Score=46.24 Aligned_cols=27 Identities=15% Similarity=0.120 Sum_probs=24.7
Q ss_pred cccCeEEEccCCeEEEEECCCCEEEEE
Q 039428 205 FGLNGIVYHPDGFLIVIHMCSGNLFKI 231 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~~~~v~~~ 231 (335)
..|.||+++++|++||+|+.+++|.+|
T Consensus 2 ~~P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 2 NYPHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp SSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred cCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence 359999999999999999999999886
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.03 E-value=0.0044 Score=57.77 Aligned_cols=226 Identities=14% Similarity=0.176 Sum_probs=135.7
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
--..+.++++.....+...+..|++|..+....| ......+ ...+++..++ +|..++. ++.. ..
T Consensus 263 ki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~-------~~~~~h~---~~V~~ls~h~-tgeYlls-As~d----~~ 326 (506)
T KOG0289|consen 263 KITSVKFHKDLDTVITASADEIIRVWSVPLSSEP-------TSSRPHE---EPVTGLSLHP-TGEYLLS-ASND----GT 326 (506)
T ss_pred EEEEEEeccchhheeecCCcceEEeeccccccCc-------ccccccc---ccceeeeecc-CCcEEEE-ecCC----ce
Confidence 3456666777665555566667777765433211 1111111 2457899997 6665554 2221 23
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
..-.|.+++.......-.. . .-....++|.|||.+|.+.+..+.|-.+|....... ..|.. ...-...
T Consensus 327 w~Fsd~~~g~~lt~vs~~~--s-~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~----a~Fpg-----ht~~vk~ 394 (506)
T KOG0289|consen 327 WAFSDISSGSQLTVVSDET--S-DVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNV----AKFPG-----HTGPVKA 394 (506)
T ss_pred EEEEEccCCcEEEEEeecc--c-cceeEEeeEcCCceEEeccCCCceEEEEEcCCcccc----ccCCC-----CCCceeE
Confidence 5556777776553322210 1 123456899999999999999999999998754321 12321 1112678
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC---CCcEE
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS---DGWET 286 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~---~~~~~ 286 (335)
|+|+..|+-.++.+..+.|.-+|++..+ ....+.+.. ......+.+|..|.+.+... +.++|.... ..|..
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~-n~kt~~l~~---~~~v~s~~fD~SGt~L~~~g--~~l~Vy~~~k~~k~W~~ 468 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLK-NFKTIQLDE---KKEVNSLSFDQSGTYLGIAG--SDLQVYICKKKTKSWTE 468 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhc-ccceeeccc---cccceeEEEcCCCCeEEeec--ceeEEEEEeccccccee
Confidence 9999888777777788889999998764 555565533 12356799999998776654 557665543 23764
Q ss_pred EEEeeeecCCCCCcceEEEEeCCeEEE
Q 039428 287 ASVVAKFNGPTHRVATAATVKDGRVYL 313 (335)
Q Consensus 287 ~~~~~~~~~p~~~~Pt~va~~~g~lyV 313 (335)
.+....-.+ .-+++.|.+..-|+
T Consensus 469 ~~~~~~~sg----~st~v~Fg~~aq~l 491 (506)
T KOG0289|consen 469 IKELADHSG----LSTGVRFGEHAQYL 491 (506)
T ss_pred eehhhhccc----ccceeeecccceEE
Confidence 433322211 23578887666666
No 87
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.01 E-value=0.0061 Score=58.12 Aligned_cols=216 Identities=17% Similarity=0.211 Sum_probs=129.8
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.+-.++.+.|+|.+|.....+++|+.+|-.+++. +.+ +.......+...+|...|+..++.-+++|.
T Consensus 191 kFV~~VRysPDG~~Fat~gsDgki~iyDGktge~----vg~---l~~~~aHkGsIfalsWsPDs~~~~T~SaDk------ 257 (603)
T KOG0318|consen 191 KFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEK----VGE---LEDSDAHKGSIFALSWSPDSTQFLTVSADK------ 257 (603)
T ss_pred cceeeEEECCCCCeEEEecCCccEEEEcCCCccE----EEE---ecCCCCccccEEEEEECCCCceEEEecCCc------
Confidence 4789999999999887778899999998555552 332 222111124678899998777777766664
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEE-----EEeCCCCeEEEEccCC-cEEEEecCCccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAY-----VTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~ly-----V~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~ 202 (335)
.+.+||..+++++....... ...|..+ |.+| ++=+..|.|--++++. ....++ .+
T Consensus 258 t~KIWdVs~~slv~t~~~~~------~v~dqqv---G~lWqkd~lItVSl~G~in~ln~~d~~~~~~i----------~G 318 (603)
T KOG0318|consen 258 TIKIWDVSTNSLVSTWPMGS------TVEDQQV---GCLWQKDHLITVSLSGTINYLNPSDPSVLKVI----------SG 318 (603)
T ss_pred eEEEEEeeccceEEEeecCC------chhceEE---EEEEeCCeEEEEEcCcEEEEecccCCChhhee----------cc
Confidence 48889999887774444311 1112221 3333 3334455555555542 221111 11
Q ss_pred cccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 203 NVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 203 ~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.......+++++|+ +|| +-+-.|.|...+...+. --.+. |+..-....+|+....+.++..++. +.++++...
T Consensus 319 HnK~ITaLtv~~d~~~i~-SgsyDG~I~~W~~~~g~--~~~~~--g~~h~nqI~~~~~~~~~~~~t~g~D-d~l~~~~~~ 392 (603)
T KOG0318|consen 319 HNKSITALTVSPDGKTIY-SGSYDGHINSWDSGSGT--SDRLA--GKGHTNQIKGMAASESGELFTIGWD-DTLRVISLK 392 (603)
T ss_pred cccceeEEEEcCCCCEEE-eeccCceEEEEecCCcc--ccccc--cccccceEEEEeecCCCcEEEEecC-CeEEEEecc
Confidence 23357899999999 555 55567889999888762 22221 1111234678998887898888773 678888765
Q ss_pred CC-cEEEEEeeeecCCCCCcceEEEEe
Q 039428 282 DG-WETASVVAKFNGPTHRVATAATVK 307 (335)
Q Consensus 282 ~~-~~~~~~~~~~~~p~~~~Pt~va~~ 307 (335)
++ +...+.. +-..+|-++++.
T Consensus 393 ~~~~t~~~~~-----~lg~QP~~lav~ 414 (603)
T KOG0318|consen 393 DNGYTKSEVV-----KLGSQPKGLAVL 414 (603)
T ss_pred cCccccccee-----ecCCCceeEEEc
Confidence 43 2222211 123446677764
No 88
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.01 E-value=0.00055 Score=61.98 Aligned_cols=152 Identities=18% Similarity=0.131 Sum_probs=98.2
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEe----CCCCe
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTD----VVSSK 176 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d----~~~~~ 176 (335)
+.++++++|.+..+.+. +-..+ ...++||..+++....... + ++-.+--..++++||+ +|.|+ ...|.
T Consensus 6 RgH~~a~~p~~~~avaf-aRRPG---~~~~v~D~~~g~~~~~~~a--~-~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~ 78 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAF-ARRPG---TFALVFDCRTGQLLQRLWA--P-PGRHFYGHGVFSPDGRLLYTTENDYETGRGV 78 (305)
T ss_pred cccceeeCCCCCeEEEE-EeCCC---cEEEEEEcCCCceeeEEcC--C-CCCEEecCEEEcCCCCEEEEeccccCCCcEE
Confidence 67899999844544443 44333 3588999999987744332 1 2133334588999996 77764 35789
Q ss_pred EEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECC-----------------CCEEEEEeCCCCce
Q 039428 177 IWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC-----------------SGNLFKIDIRKEEE 238 (335)
Q Consensus 177 I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~-----------------~~~v~~~d~~~~~~ 238 (335)
|-++|......++ ..|.. .+.+|+-|.+.||| +|.|++.+ .-.|..+|..+++
T Consensus 79 IgVyd~~~~~~ri---~E~~s-----~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~- 149 (305)
T PF07433_consen 79 IGVYDAARGYRRI---GEFPS-----HGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA- 149 (305)
T ss_pred EEEEECcCCcEEE---eEecC-----CCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc-
Confidence 9999988544442 23332 46789999999999 99999854 1235556555543
Q ss_pred eEEEEeccCCcCCCCCCeEEEcCCCcEEEEe
Q 039428 239 EVKLIELRGGSSLSLGDGLALLSPTKLVVAG 269 (335)
Q Consensus 239 ~~~~~~~~g~~~~~~pdGia~d~~g~l~va~ 269 (335)
.++.+.++.+.....-.-++++++|.++++.
T Consensus 150 ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~ 180 (305)
T PF07433_consen 150 LLEQVELPPDLHQLSIRHLAVDGDGTVAFAM 180 (305)
T ss_pred eeeeeecCccccccceeeEEecCCCcEEEEE
Confidence 3444444221111235789999999999993
No 89
>PRK04922 tolB translocation protein TolB; Provisional
Probab=98.01 E-value=0.0031 Score=60.97 Aligned_cols=156 Identities=13% Similarity=0.154 Sum_probs=90.5
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC--CCCeEEE
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV--VSSKIWK 179 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~--~~~~I~~ 179 (335)
....+++|++..|+.+. ...+. ..|+++|.++++........ ......+++|||+ ++++.+ .+..||+
T Consensus 206 v~~p~wSpDg~~la~~s-~~~~~--~~l~~~dl~~g~~~~l~~~~------g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~ 276 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVS-FERGR--SAIYVQDLATGQRELVASFR------GINGAPSFSPDGRRLALTLSRDGNPEIYV 276 (433)
T ss_pred cccccCCCCCCEEEEEe-cCCCC--cEEEEEECCCCCEEEeccCC------CCccCceECCCCCEEEEEEeCCCCceEEE
Confidence 35667787555555542 22222 46999999888665333221 1223578999996 655533 3457999
Q ss_pred EccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCe
Q 039428 180 VGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDG 256 (335)
Q Consensus 180 ~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdG 256 (335)
+|.+++..+.+... .......+++||| +|+++... ..+||+++.+++ ..+.+...+ . ....
T Consensus 277 ~d~~~g~~~~lt~~----------~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g--~~~~lt~~g-~---~~~~ 340 (433)
T PRK04922 277 MDLGSRQLTRLTNH----------FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG--SAERLTFQG-N---YNAR 340 (433)
T ss_pred EECCCCCeEECccC----------CCCccceEECCCCCEEEEEECCCCCceEEEEECCCC--CeEEeecCC-C---CccC
Confidence 99886654422110 0113457999999 66655433 347999998876 444444333 1 2335
Q ss_pred EEEcCCCc-EEEEecC--CCeEEEEEcCCC
Q 039428 257 LALLSPTK-LVVAGNP--YPSARLVESSDG 283 (335)
Q Consensus 257 ia~d~~g~-l~va~~~--~~~~~v~~~~~~ 283 (335)
.++.++|+ ++++... ...+.+++...+
T Consensus 341 ~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 341 ASVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred EEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 78889985 4444321 124667766443
No 90
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=98.01 E-value=0.0037 Score=56.52 Aligned_cols=191 Identities=19% Similarity=0.217 Sum_probs=111.4
Q ss_pred CCcceEEEeCCCCeEEEEEecCCCCccceEEEE---E-C-CCCeEE-----EEeecCCCccCCCCCCceeECCCCcEEEE
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAY---D-L-STWKRL-----FLTQLSGKSEEKSTADDIAVDAEGNAYVT 170 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~---d-~-~~~~~~-----~~~~~~~~~~~~~~p~~~~vd~~G~lyV~ 170 (335)
.+|.|+++. .++||+++. .+|++| + . +.++.. ...+-...-.+.--..|+++ .++.+|+.
T Consensus 49 ~r~MGl~~~--~~~l~~~t~-------~qiw~f~~~~n~l~~~~~~~~~D~~yvPr~~~~TGdidiHdia~-~~~~l~fV 118 (335)
T TIGR03032 49 PRPMGLAVS--PQSLTLGTR-------YQLWRFANVDNLLPAGQTHPGYDRLYVPRASYVTGDIDAHDLAL-GAGRLLFV 118 (335)
T ss_pred Cccceeeee--CCeEEEEEc-------ceeEEcccccccccccccCCCCCeEEeeeeeeeccCcchhheee-cCCcEEEE
Confidence 378899997 588999543 358887 2 1 111110 00000000011344578999 66788888
Q ss_pred eCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCC---CEEEEEeCCCCceeEEEEe--
Q 039428 171 DVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCS---GNLFKIDIRKEEEEVKLIE-- 244 (335)
Q Consensus 171 d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~---~~v~~~d~~~~~~~~~~~~-- 244 (335)
++.-.++-.+++.-++...|+-+ |-..-.++..-..||+|+. || --||+-... ..-||=....++ .+..+.
T Consensus 119 NT~fSCLatl~~~~SF~P~WkPp-FIs~la~eDRCHLNGlA~~-~g~p~yVTa~~~sD~~~gWR~~~~~gG-~vidv~s~ 195 (335)
T TIGR03032 119 NTLFSCLATVSPDYSFVPLWKPP-FISKLAPEDRCHLNGMALD-DGEPRYVTALSQSDVADGWREGRRDGG-CVIDIPSG 195 (335)
T ss_pred ECcceeEEEECCCCccccccCCc-cccccCccCceeecceeee-CCeEEEEEEeeccCCcccccccccCCe-EEEEeCCC
Confidence 99989999999998887666533 3321122345679999998 66 678765332 122332222221 222221
Q ss_pred ---ccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEeCCeEEEE
Q 039428 245 ---LRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVKDGRVYLS 314 (335)
Q Consensus 245 ---~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~ 314 (335)
..| +.+|.+-.+- +|+||+++.+.+.+..++.+.| ..+.+..+ |. +|.++++.++-++|+
T Consensus 196 evl~~G---LsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G--~~e~Va~v--pG--~~rGL~f~G~llvVg 258 (335)
T TIGR03032 196 EVVASG---LSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAG--KFQPVAFL--PG--FTRGLAFAGDFAFVG 258 (335)
T ss_pred CEEEcC---ccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCC--cEEEEEEC--CC--CCcccceeCCEEEEE
Confidence 122 5667777776 5899999997777776765444 22333433 32 467888886666674
No 91
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.00 E-value=0.0032 Score=59.94 Aligned_cols=192 Identities=19% Similarity=0.193 Sum_probs=121.0
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
--..+++.+++..+|....+|.|..|+...+. .. ++ .+....+...+|+.+. .+.++.+..|. .
T Consensus 322 ~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~------~~-~~--~g~~h~nqI~~~~~~~-~~~~~t~g~Dd------~ 385 (603)
T KOG0318|consen 322 SITALTVSPDGKTIYSGSYDGHINSWDSGSGT------SD-RL--AGKGHTNQIKGMAASE-SGELFTIGWDD------T 385 (603)
T ss_pred ceeEEEEcCCCCEEEeeccCceEEEEecCCcc------cc-cc--ccccccceEEEEeecC-CCcEEEEecCC------e
Confidence 34688999999888888889999999864343 11 12 1121224567898884 68888865553 4
Q ss_pred EEEEECCCCeEE--EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 130 LAAYDLSTWKRL--FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 130 v~~~d~~~~~~~--~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
|.+++...+... ....+ ...|-++++.++|.+.+.-... .|..+.-.++.... +....+
T Consensus 386 l~~~~~~~~~~t~~~~~~l------g~QP~~lav~~d~~~avv~~~~-~iv~l~~~~~~~~~------------~~~y~~ 446 (603)
T KOG0318|consen 386 LRVISLKDNGYTKSEVVKL------GSQPKGLAVLSDGGTAVVACIS-DIVLLQDQTKVSSI------------PIGYES 446 (603)
T ss_pred EEEEecccCcccccceeec------CCCceeEEEcCCCCEEEEEecC-cEEEEecCCcceee------------cccccc
Confidence 888887654332 11233 4567899999997533332333 34555433333221 123558
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCc--eeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEE--EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~--~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.++|++|++.....-...++|+.+.+.+.. ++....+.. +.+.-+++.||+.++++...+..+.+++..
T Consensus 447 s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~-----a~iT~vaySpd~~yla~~Da~rkvv~yd~~ 517 (603)
T KOG0318|consen 447 SAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR-----AAITDVAYSPDGAYLAAGDASRKVVLYDVA 517 (603)
T ss_pred ceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeeccc-----CCceEEEECCCCcEEEEeccCCcEEEEEcc
Confidence 899999999666566677889999988862 122223322 347899999999988885544555555543
No 92
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.98 E-value=0.0005 Score=65.12 Aligned_cols=224 Identities=12% Similarity=0.087 Sum_probs=136.4
Q ss_pred CCceeEEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeE
Q 039428 37 PATHVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRL 115 (335)
Q Consensus 37 ~~~~~~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l 115 (335)
|..+.|++......-..+++||.|.+|+.+..+..|..||-. |-- ...+.+-. .|. ..+..+.+.+.+..+.|
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~-gMd----as~~~fr~l~P~-E~h~i~sl~ys~Tg~~i 229 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQ-GMD----ASMRSFRQLQPC-ETHQINSLQYSVTGDQI 229 (641)
T ss_pred CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecc-ccc----ccchhhhccCcc-cccccceeeecCCCCeE
Confidence 445667776555556789999999999998889999999954 431 01000111 121 12345788888766677
Q ss_pred EEEEecCCCCccceEEEEECCCCeEEEEee-------cCC-CccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccC--C
Q 039428 116 LVAFTDVLGNKYSALAAYDLSTWKRLFLTQ-------LSG-KSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVE--G 184 (335)
Q Consensus 116 ~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~-------~~~-~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~--g 184 (335)
.|+++. ++...||.++.++..... ... .+. ....+.....|+. +.|++.+..+.+..++-+ -
T Consensus 230 Lvvsg~------aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGH-ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k 302 (641)
T KOG0772|consen 230 LVVSGS------AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGH-IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK 302 (641)
T ss_pred EEEecC------cceeEEccCCceeeeeeccchhhhhhhccCCc-eeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence 775432 347788988765542211 110 111 3445667777874 588888876655555543 3
Q ss_pred cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCc-eeEEEEeccCCcCC--CCCCeEEEcC
Q 039428 185 QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEE-EEVKLIELRGGSSL--SLGDGLALLS 261 (335)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~-~~~~~~~~~g~~~~--~~pdGia~d~ 261 (335)
+...++... .. .+....+..-+|++||.++.+-+.+|.|...+..+.. .....+.-. + . ....-++|..
T Consensus 303 ~q~qVik~k-~~----~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~A--H-~~g~~Itsi~FS~ 374 (641)
T KOG0772|consen 303 SQLQVIKTK-PA----GGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDA--H-LPGQDITSISFSY 374 (641)
T ss_pred hheeEEeec-cC----CCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeec--c-CCCCceeEEEecc
Confidence 344444321 11 1223458889999999999999999999988875531 011222210 1 1 1356799999
Q ss_pred CCcEEEEecCCCeEEEEEcC
Q 039428 262 PTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 262 ~g~l~va~~~~~~~~v~~~~ 281 (335)
+|+...+-...+.+++.++.
T Consensus 375 dg~~LlSRg~D~tLKvWDLr 394 (641)
T KOG0772|consen 375 DGNYLLSRGFDDTLKVWDLR 394 (641)
T ss_pred ccchhhhccCCCceeeeecc
Confidence 99988885545677777664
No 93
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.96 E-value=0.0043 Score=60.43 Aligned_cols=201 Identities=17% Similarity=0.232 Sum_probs=125.5
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..+.++++|+.+.....++.+..++....+. . ......-.......+++.+ ++.+.++.++. ..|.
T Consensus 163 ~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----~---~~~~l~~h~~~v~~~~fs~-d~~~l~s~s~D-----~tir 228 (456)
T KOG0266|consen 163 TCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----N---LLRELSGHTRGVSDVAFSP-DGSYLLSGSDD-----KTLR 228 (456)
T ss_pred EEEEEcCCCCeEEEccCCCcEEEeecccccc-----h---hhccccccccceeeeEECC-CCcEEEEecCC-----ceEE
Confidence 3468899999855556677777776422210 0 1111100013568999997 67655543322 4699
Q ss_pred EEEC-CCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccCe
Q 039428 132 AYDL-STWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 132 ~~d~-~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
+||. +.+....... +. ....+.++|.++|+++++.+..+.|..+|..+ +..+.+.. .....++
T Consensus 229 iwd~~~~~~~~~~l~--gH---~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~----------hs~~is~ 293 (456)
T KOG0266|consen 229 IWDLKDDGRNLKTLK--GH---STYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG----------HSDGISG 293 (456)
T ss_pred EeeccCCCeEEEEec--CC---CCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec----------cCCceEE
Confidence 9998 4434433222 11 45678999999999999999999999999875 55443321 1224789
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEE-eccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLI-ELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~-~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
+++++||+++++.+.++.|..+|...+ ..... .+.+.....--.-+.+.+++...++....+.++..+...+
T Consensus 294 ~~f~~d~~~l~s~s~d~~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 294 LAFSPDGNLLVSASYDGTIRVWDLETG--SKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG 366 (456)
T ss_pred EEECCCCCEEEEcCCCccEEEEECCCC--ceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC
Confidence 999999977777788999999999987 32211 1112110011267788899876666543355666665433
No 94
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.95 E-value=0.012 Score=52.34 Aligned_cols=220 Identities=14% Similarity=0.155 Sum_probs=132.5
Q ss_pred ceeeeEEcCCCCEEEEEecCCe--EEEEECC--CCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 50 LCETAKWDDVGRRFLVSFLDGG--VGQVLVP--DEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~--I~~~d~~--~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
.--..|+.|.|+.......++. ||.+... ++..+ ++ +. .++.. .......+-+ +++|.-.++|.
T Consensus 99 WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~---v~--r~--l~gHt-gylScC~f~d-D~~ilT~SGD~--- 166 (343)
T KOG0286|consen 99 WVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVR---VS--RE--LAGHT-GYLSCCRFLD-DNHILTGSGDM--- 166 (343)
T ss_pred eEEEEEECCCCCeEEecCcCceeEEEecccccccccce---ee--ee--ecCcc-ceeEEEEEcC-CCceEecCCCc---
Confidence 3446799999986655555664 5555322 12110 01 01 12222 2234555553 67777754443
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~ 203 (335)
....||.++++....... . ..-.-.+.+.| ++|.||+..-...-..+|.. +...+ .|.. .
T Consensus 167 ---TCalWDie~g~~~~~f~G--H---~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~q-----tF~g-----h 228 (343)
T KOG0286|consen 167 ---TCALWDIETGQQTQVFHG--H---TGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQ-----TFEG-----H 228 (343)
T ss_pred ---eEEEEEcccceEEEEecC--C---cccEEEEecCCCCCCeEEecccccceeeeeccCcceeE-----eecc-----c
Confidence 588899999987633221 1 12234577778 89999998766666666654 33333 2322 1
Q ss_pred ccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 204 VFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
..-.|.++|.|+|.-|++-+.++...-||+..++ ++..+.... . ..+...+++...|+|..++.......|.+.-.
T Consensus 229 esDINsv~ffP~G~afatGSDD~tcRlyDlRaD~-~~a~ys~~~-~-~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk- 304 (343)
T KOG0286|consen 229 ESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ-ELAVYSHDS-I-ICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK- 304 (343)
T ss_pred ccccceEEEccCCCeeeecCCCceeEEEeecCCc-EEeeeccCc-c-cCCceeEEEcccccEEEeeecCCceeEeeccc-
Confidence 2348999999999999999999999999999875 566665332 2 34468999999999999966444455555322
Q ss_pred cEEEEEeeeecCCCCCcceEEEEe
Q 039428 284 WETASVVAKFNGPTHRVATAATVK 307 (335)
Q Consensus 284 ~~~~~~~~~~~~p~~~~Pt~va~~ 307 (335)
.+..+.+.+...+ .+.+.+.
T Consensus 305 ---~e~vg~L~GHeNR-vScl~~s 324 (343)
T KOG0286|consen 305 ---GERVGVLAGHENR-VSCLGVS 324 (343)
T ss_pred ---cceEEEeeccCCe-eEEEEEC
Confidence 2334444333322 3455553
No 95
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.94 E-value=0.00056 Score=63.25 Aligned_cols=195 Identities=15% Similarity=0.139 Sum_probs=123.1
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCC-C-eEEEEEecCCCCccce
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPR-N-RLLVAFTDVLGNKYSA 129 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~-g-~l~v~~~D~~~~~~~~ 129 (335)
.+..++.++.+++++.++|.+-+|..++... +. ++. +.. ....++.++|.. + .+--+..|. .
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~----~~--~l~---gH~-~~v~~~~fhP~~~~~~lat~s~Dg------t 242 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNL----LQ--TLR---GHT-SRVGAAVFHPVDSDLNLATASADG------T 242 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCcce----eE--EEe---ccc-cceeeEEEccCCCccceeeeccCC------c
Confidence 4667889999998889999999998665541 11 232 211 245688898852 3 333333332 3
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
+..|+.++...+ .++.+. ......+++.|+|.+..|.+....-..+|...+....... +.-.+..+
T Consensus 243 vklw~~~~e~~l--~~l~gH---~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QE---------GHs~~v~~ 308 (459)
T KOG0272|consen 243 VKLWKLSQETPL--QDLEGH---LARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQE---------GHSKGVFS 308 (459)
T ss_pred eeeeccCCCcch--hhhhcc---hhhheeeeecCCCceeeecccccchhhcccccchhhHhhc---------ccccccce
Confidence 556666554333 223221 4567789999999999998887666666666544321111 12235789
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
|+|.+||.|..+-..+..=.+.|+.++. ....+. | + ..-..+++++|+|....++...|..+|.++.
T Consensus 309 iaf~~DGSL~~tGGlD~~~RvWDlRtgr-~im~L~--g-H-~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR 375 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGLDSLGRVWDLRTGR-CIMFLA--G-H-IKEILSVAFSPNGYHLATGSSDNTCKVWDLR 375 (459)
T ss_pred eEecCCCceeeccCccchhheeecccCc-EEEEec--c-c-ccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence 9999999998776544322333666653 333333 3 3 3446899999999888887767877777654
No 96
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.93 E-value=0.0064 Score=55.90 Aligned_cols=214 Identities=15% Similarity=0.154 Sum_probs=120.2
Q ss_pred eeEEEcCC-----CcceeeeEEcCCCCEEEEE--ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCC
Q 039428 40 HVYQYHSP-----SFLCETAKWDDVGRRFLVS--FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPR 112 (335)
Q Consensus 40 ~~~~~~~~-----~~~pegia~d~~g~~~~~~--~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~ 112 (335)
.+|.++.. ..++...+++.+|+.+|+. ....+|.++|...++ ++. .+..|+ +.+|.-.. +
T Consensus 81 ~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k----vv~---ei~~PG-----C~~iyP~~-~ 147 (342)
T PF06433_consen 81 GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK----VVG---EIDTPG-----CWLIYPSG-N 147 (342)
T ss_dssp EEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE----EEE---EEEGTS-----EEEEEEEE-T
T ss_pred ceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCc----eee---eecCCC-----EEEEEecC-C
Confidence 34555543 2356788999999988888 455789999975443 344 234454 34554443 4
Q ss_pred CeEEEEEecCCCCccceEEEEECC-CCeEE-EEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCcEEEE
Q 039428 113 NRLLVAFTDVLGNKYSALAAYDLS-TWKRL-FLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQLLSI 189 (335)
Q Consensus 113 g~l~v~~~D~~~~~~~~v~~~d~~-~~~~~-~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~~~~~ 189 (335)
.+++..++|. .+..+.++ .|+.. .....-.+.. -...+.-+.++ .+++|+. +.+|.|+.+|..|...+.
T Consensus 148 ~~F~~lC~DG------sl~~v~Ld~~Gk~~~~~t~~F~~~~-dp~f~~~~~~~~~~~~~F~-Sy~G~v~~~dlsg~~~~~ 219 (342)
T PF06433_consen 148 RGFSMLCGDG------SLLTVTLDADGKEAQKSTKVFDPDD-DPLFEHPAYSRDGGRLYFV-SYEGNVYSADLSGDSAKF 219 (342)
T ss_dssp TEEEEEETTS------CEEEEEETSTSSEEEEEEEESSTTT-S-B-S--EEETTTTEEEEE-BTTSEEEEEEETTSSEEE
T ss_pred CceEEEecCC------ceEEEEECCCCCEeEeeccccCCCC-cccccccceECCCCeEEEE-ecCCEEEEEeccCCcccc
Confidence 5666655664 35555544 33333 2212111111 11223333334 4567664 788999999988765443
Q ss_pred ecCCc--ccc----ccccccccccCeEEEccC-CeEEEEECC---------CCEEEEEeCCCCceeEEEEeccCCcCCCC
Q 039428 190 IRSPL--FTA----KEWYKNVFGLNGIVYHPD-GFLIVIHMC---------SGNLFKIDIRKEEEEVKLIELRGGSSLSL 253 (335)
Q Consensus 190 ~~~~~--~~~----~~~~~~~~~p~Gia~~~d-g~Lyvad~~---------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~ 253 (335)
.. +| +.. .++.| .+-+-+|+++. ++|||--.. +..||++|+...+ .+..+++.. .
T Consensus 220 ~~-~~~~~t~~e~~~~WrP--GG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~k-rv~Ri~l~~-~---- 290 (342)
T PF06433_consen 220 GK-PWSLLTDAEKADGWRP--GGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHK-RVARIPLEH-P---- 290 (342)
T ss_dssp EE-EEESS-HHHHHTTEEE---SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTE-EEEEEEEEE-E----
T ss_pred cC-cccccCccccccCcCC--cceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCe-EEEEEeCCC-c----
Confidence 22 11 111 11222 23556888874 599985321 2479999999986 777777643 1
Q ss_pred CCeEEEcCCC--cEEEEecCCCeEEEEEcCCC
Q 039428 254 GDGLALLSPT--KLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 254 pdGia~d~~g--~l~va~~~~~~~~v~~~~~~ 283 (335)
.+.|++..+. .||..+.+...+.|++...|
T Consensus 291 ~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 291 IDSIAVSQDDKPLLYALSAGDGTLDVYDAATG 322 (342)
T ss_dssp ESEEEEESSSS-EEEEEETTTTEEEEEETTT-
T ss_pred cceEEEccCCCcEEEEEcCCCCeEEEEeCcCC
Confidence 4688887765 47666654467888887665
No 97
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.93 E-value=0.0082 Score=57.42 Aligned_cols=188 Identities=15% Similarity=0.144 Sum_probs=102.8
Q ss_pred CCEEEEEec----CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEEC
Q 039428 60 GRRFLVSFL----DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDL 135 (335)
Q Consensus 60 g~~~~~~~~----~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~ 135 (335)
++++|+... ...|+..|. ++..+ . .+. .+. ......++++++..|+.+.. ..+. ..|+++|.
T Consensus 156 ~~~~~~~~~~~~~~~~l~~~d~-~g~~~----~--~l~-~~~---~~~~~p~~Spdg~~la~~~~-~~~~--~~i~v~d~ 221 (417)
T TIGR02800 156 TRIAYVSKSGKSRRYELQVADY-DGANP----Q--TIT-RSR---EPILSPAWSPDGQKLAYVSF-ESGK--PEIYVQDL 221 (417)
T ss_pred CEEEEEEEeCCCCcceEEEEcC-CCCCC----E--Eee-cCC---CceecccCCCCCCEEEEEEc-CCCC--cEEEEEEC
Confidence 346666622 246888874 44421 1 132 222 12345567774445554322 2111 46999999
Q ss_pred CCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCC--CCeEEEEccCCcEEEEecCCccccccccccccccCeEEE
Q 039428 136 STWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVV--SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVY 212 (335)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~--~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~ 212 (335)
++++....... ......+++.|||+ ++++... ...||.++.+++..+.+.. .. ......++
T Consensus 222 ~~g~~~~~~~~------~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~--------~~~~~~~~ 285 (417)
T TIGR02800 222 ATGQREKVASF------PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTN--GP--------GIDTEPSW 285 (417)
T ss_pred CCCCEEEeecC------CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCC--CC--------CCCCCEEE
Confidence 88865432222 12233578999985 7665443 4579999987654442211 00 01235688
Q ss_pred ccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCC--CeEEEEEcCCC
Q 039428 213 HPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPY--PSARLVESSDG 283 (335)
Q Consensus 213 ~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~--~~~~v~~~~~~ 283 (335)
++|| +|+++... ..+|++++++++ ..+.+...+ .....+++.++|+ ++++.... ..+.+++...+
T Consensus 286 s~dg~~l~~~s~~~g~~~iy~~d~~~~--~~~~l~~~~----~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~ 356 (417)
T TIGR02800 286 SPDGKSIAFTSDRGGSPQIYMMDADGG--EVRRLTFRG----GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG 356 (417)
T ss_pred CCCCCEEEEEECCCCCceEEEEECCCC--CEEEeecCC----CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC
Confidence 9998 66554432 348999999876 444443322 2245678888886 44443321 24666665544
No 98
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.93 E-value=0.001 Score=60.96 Aligned_cols=151 Identities=17% Similarity=0.124 Sum_probs=89.3
Q ss_pred CCeEEEEEecCC-CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCC---------CCeEEEE
Q 039428 112 RNRLLVAFTDVL-GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVV---------SSKIWKV 180 (335)
Q Consensus 112 ~g~l~v~~~D~~-~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~---------~~~I~~~ 180 (335)
..++|| .|.. .+-.++++++|.++++++-.++. ...+ .++++|||+ +|++++. +.-|..+
T Consensus 2 ~~rvyV--~D~~~~~~~~rv~viD~d~~k~lGmi~~------g~~~-~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~ 72 (342)
T PF06433_consen 2 AHRVYV--QDPVFFHMTSRVYVIDADSGKLLGMIDT------GFLG-NVALSPDGKTIYVAETFYSRGTRGERTDVVEIW 72 (342)
T ss_dssp TTEEEE--EE-GGGGSSEEEEEEETTTTEEEEEEEE------ESSE-EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEE
T ss_pred CcEEEE--ECCccccccceEEEEECCCCcEEEEeec------ccCC-ceeECCCCCEEEEEEEEEeccccccceeEEEEE
Confidence 478999 5542 12225799999999988744443 1222 388899985 9988753 3456667
Q ss_pred ccCCcEEEEecCCccccccc-c-ccccccCeEEEccCC-eEEEEECC-CCEEEEEeCCCCceeEEEEeccCCcCCCCCCe
Q 039428 181 GVEGQLLSIIRSPLFTAKEW-Y-KNVFGLNGIVYHPDG-FLIVIHMC-SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDG 256 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~~~~~-~-~~~~~p~Gia~~~dg-~Lyvad~~-~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdG 256 (335)
|+.+-.... ....|.. . -....++-++++.|| ++||.+.. ...|.++|+..++ .+..++++| +.+.+|.|
T Consensus 73 D~~TL~~~~----EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~k-vv~ei~~PG-C~~iyP~~ 146 (342)
T PF06433_consen 73 DTQTLSPTG----EIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKK-VVGEIDTPG-CWLIYPSG 146 (342)
T ss_dssp ETTTTEEEE----EEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTE-EEEEEEGTS-EEEEEEEE
T ss_pred ecCcCcccc----eEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCc-eeeeecCCC-EEEEEecC
Confidence 776533221 0111110 0 123457889999999 99998854 6789999999986 778888877 43444533
Q ss_pred EEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 257 LALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 257 ia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
++ ..+..+. ++++..+.++++
T Consensus 147 ----~~-~F~~lC~-DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 147 ----NR-GFSMLCG-DGSLLTVTLDAD 167 (342)
T ss_dssp ----TT-EEEEEET-TSCEEEEEETST
T ss_pred ----CC-ceEEEec-CCceEEEEECCC
Confidence 22 3332222 245555666644
No 99
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=97.90 E-value=0.015 Score=51.74 Aligned_cols=232 Identities=15% Similarity=0.132 Sum_probs=148.0
Q ss_pred EEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 43 QYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 43 ~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
.+.+...--..+-|.++.++++....+|++.+||.-++++ +. .+..|. .+..-.++.| .+++.++ +..
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK----~h---aipl~s---~WVMtCA~sP-Sg~~VAc-GGL 117 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNK----VH---AIPLPS---SWVMTCAYSP-SGNFVAC-GGL 117 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccc----ee---EEecCc---eeEEEEEECC-CCCeEEe-cCc
Confidence 3444444567889999999888778899999999655552 11 333332 2567788888 7777664 222
Q ss_pred CCCccceEEEEECCCC--e--EEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccc
Q 039428 123 LGNKYSALAAYDLSTW--K--RLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTA 197 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~--~--~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~ 197 (335)
. +.-.+|++.+. + ......+.+ . ..+.....+-+|+ -.+|.++..+...+|.+ |+....+ ..
T Consensus 118 -d---N~Csiy~ls~~d~~g~~~v~r~l~g--H-tgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f-----~G 184 (343)
T KOG0286|consen 118 -D---NKCSIYPLSTRDAEGNVRVSRELAG--H-TGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVF-----HG 184 (343)
T ss_pred -C---ceeEEEecccccccccceeeeeecC--c-cceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEe-----cC
Confidence 2 34667776644 1 112222322 1 4667777777665 45677888888888876 4454433 21
Q ss_pred ccccccccccCeEEEcc-CCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEE
Q 039428 198 KEWYKNVFGLNGIVYHP-DGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSAR 276 (335)
Q Consensus 198 ~~~~~~~~~p~Gia~~~-dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~ 276 (335)
...-.-+|.+.| +++.||+-.-...-+..|...+. -++.|.... .-...+.+-|+|.-++++......|
T Consensus 185 -----H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~-c~qtF~ghe----sDINsv~ffP~G~afatGSDD~tcR 254 (343)
T KOG0286|consen 185 -----HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ-CVQTFEGHE----SDINSVRFFPSGDAFATGSDDATCR 254 (343)
T ss_pred -----CcccEEEEecCCCCCCeEEecccccceeeeeccCcc-eeEeecccc----cccceEEEccCCCeeeecCCCceeE
Confidence 112367889999 77999998888877777888764 677776332 2367899999999999977556677
Q ss_pred EEEcCCCcEEEEEeeeecCC-CCCcceEEEEe-CCeEEE
Q 039428 277 LVESSDGWETASVVAKFNGP-THRVATAATVK-DGRVYL 313 (335)
Q Consensus 277 v~~~~~~~~~~~~~~~~~~p-~~~~Pt~va~~-~g~lyV 313 (335)
.++...+-. +..+..+ ...-.++++|. .|||..
T Consensus 255 lyDlRaD~~----~a~ys~~~~~~gitSv~FS~SGRlLf 289 (343)
T KOG0286|consen 255 LYDLRADQE----LAVYSHDSIICGITSVAFSKSGRLLF 289 (343)
T ss_pred EEeecCCcE----EeeeccCcccCCceeEEEcccccEEE
Confidence 777765422 2223212 12223678884 788665
No 100
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.90 E-value=0.002 Score=55.99 Aligned_cols=185 Identities=15% Similarity=0.142 Sum_probs=115.6
Q ss_pred CEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCe
Q 039428 61 RRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWK 139 (335)
Q Consensus 61 ~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~ 139 (335)
.++.++ ..+.+|..|...+|.. . ..++.++. ..+.+.+.| +++..++.+ .+ .|..||..++.
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C-----~--rTiqh~ds---qVNrLeiTp-dk~~LAaa~---~q---hvRlyD~~S~n 72 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGIC-----S--RTIQHPDS---QVNRLEITP-DKKDLAAAG---NQ---HVRLYDLNSNN 72 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeE-----E--EEEecCcc---ceeeEEEcC-Ccchhhhcc---CC---eeEEEEccCCC
Confidence 456666 7889999998766652 2 24455542 567899997 555555322 12 39999998875
Q ss_pred EEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eE
Q 039428 140 RLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FL 218 (335)
Q Consensus 140 ~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~L 218 (335)
.-..+.+.++ -+....+.|-.+|+..++.+..+.+..+|...-... ..|..+ .-.|.+++.|.. .|
T Consensus 73 p~Pv~t~e~h---~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~q----R~~~~~------spVn~vvlhpnQteL 139 (311)
T KOG0315|consen 73 PNPVATFEGH---TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQ----RNYQHN------SPVNTVVLHPNQTEL 139 (311)
T ss_pred CCceeEEecc---CCceEEEEEeecCeEEEecCCCceEEEEeccCcccc----hhccCC------CCcceEEecCCcceE
Confidence 4322333222 245667888899998888899999988887652211 122211 127999999977 88
Q ss_pred EEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 219 IVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 219 yvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
+++| .++.|++.|+....=.-+.++ .. .....-++++++|...++.+..++-.|.+.
T Consensus 140 is~d-qsg~irvWDl~~~~c~~~liP--e~--~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 140 ISGD-QSGNIRVWDLGENSCTHELIP--ED--DTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred Eeec-CCCcEEEEEccCCccccccCC--CC--CcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 8887 577799999887520112222 11 122467888888887777442244444443
No 101
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.87 E-value=0.0014 Score=57.00 Aligned_cols=191 Identities=14% Similarity=0.139 Sum_probs=120.4
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEE---EeCCCCeEEEEEecCCCCc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIA---VDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~---~d~~~g~l~v~~~D~~~~~ 126 (335)
.-..+|++.+.+.+++...+.-+.++|.+.-..| ..... +.+.||. +-..+..++-. +|.
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~Ap--------p~E~~----ghtg~Ir~v~wc~eD~~iLSS-add---- 164 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAP--------PKEIS----GHTGGIRTVLWCHEDKCILSS-ADD---- 164 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCCCC--------chhhc----CCCCcceeEEEeccCceEEee-ccC----
Confidence 4568899998887776654554555553222211 11111 2233332 22224545443 333
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
..|..||..++..+....+ ...++.+.+.++|++.. -...+.|.-+|++.--+ ++ .+..| .+
T Consensus 165 -~tVRLWD~rTgt~v~sL~~------~s~VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~--lK--s~k~P------~n 226 (334)
T KOG0278|consen 165 -KTVRLWDHRTGTEVQSLEF------NSPVTSLEVSQDGRILT-IAYGSSVKFWDAKSFGL--LK--SYKMP------CN 226 (334)
T ss_pred -CceEEEEeccCcEEEEEec------CCCCcceeeccCCCEEE-EecCceeEEeccccccc--ee--eccCc------cc
Confidence 3589999999987766555 34567899999997654 46667888888874211 11 22222 34
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.+.-.+.|+...||+-.....+++||.+++. ....+. .| . ++-..-+.+.|+|.+|.++...+.+++..
T Consensus 227 V~SASL~P~k~~fVaGged~~~~kfDy~Tge-Ei~~~n-kg-h-~gpVhcVrFSPdGE~yAsGSEDGTirlWQ 295 (334)
T KOG0278|consen 227 VESASLHPKKEFFVAGGEDFKVYKFDYNTGE-EIGSYN-KG-H-FGPVHCVRFSPDGELYASGSEDGTIRLWQ 295 (334)
T ss_pred cccccccCCCceEEecCcceEEEEEeccCCc-eeeecc-cC-C-CCceEEEEECCCCceeeccCCCceEEEEE
Confidence 6677888988999999999999999999874 444431 23 2 34357889999999999977656666544
No 102
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=97.86 E-value=0.0069 Score=53.50 Aligned_cols=201 Identities=9% Similarity=0.098 Sum_probs=121.9
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..---+++++++.+.++....+.+|.-|+.. +.. . .+.....+ -++..-+.+.|...+.+++++ +.+
T Consensus 105 ~~dVlsva~s~dn~qivSGSrDkTiklwnt~-g~c-----k-~t~~~~~~--~~WVscvrfsP~~~~p~Ivs~--s~D-- 171 (315)
T KOG0279|consen 105 TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL-GVC-----K-YTIHEDSH--REWVSCVRFSPNESNPIIVSA--SWD-- 171 (315)
T ss_pred CCceEEEEecCCCceeecCCCcceeeeeeec-ccE-----E-EEEecCCC--cCcEEEEEEcCCCCCcEEEEc--cCC--
Confidence 3345689999998887777889999999854 431 1 01221211 246789999985556777543 334
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
..|.+||+++-++... + ++. ..+.|-++|.|||.+-.+....+.++.+|.+ ++....++ ....
T Consensus 172 ktvKvWnl~~~~l~~~--~--~gh-~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-----------a~~~ 235 (315)
T KOG0279|consen 172 KTVKVWNLRNCQLRTT--F--IGH-SGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-----------AFDI 235 (315)
T ss_pred ceEEEEccCCcchhhc--c--ccc-cccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-----------CCCe
Confidence 3699999988766522 2 122 5788999999999999998889999999976 44433222 1223
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEecc--CC-cCCCCC--CeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR--GG-SSLSLG--DGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~--g~-~~~~~p--dGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.+.++|+|..+.+ +-.....|..+|++.+. .+..+... |. .....| --+|..++|.-..++..+|.+++..
T Consensus 236 v~sl~fspnrywL-~~at~~sIkIwdl~~~~-~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 236 VNSLCFSPNRYWL-CAATATSIKIWDLESKA-VVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EeeEEecCCceeE-eeccCCceEEEeccchh-hhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence 7899999876333 33334447777777752 22222211 10 001123 2345556775444433345566543
No 103
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.85 E-value=0.0088 Score=57.74 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=87.0
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCC--CCeEEE
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVV--SSKIWK 179 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~--~~~I~~ 179 (335)
.....++|++.+|..+..+. +. ..|+.+|.++++........+ .-..+++.|||+ ++++... .-.||.
T Consensus 206 v~~p~wSPDG~~la~~s~~~-~~--~~i~i~dl~tg~~~~l~~~~g------~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 276 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFEN-KK--SQLVVHDLRSGARKVVASFRG------HNGAPAFSPDGSRLAFASSKDGVLNIYV 276 (429)
T ss_pred cccceEcCCCCEEEEEEecC-CC--cEEEEEeCCCCceEEEecCCC------ccCceeECCCCCEEEEEEecCCcEEEEE
Confidence 46788888555554432221 11 469999998876543333311 123589999996 5554332 336899
Q ss_pred EccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEEC--CCCEEEEEeCCCCceeEEEEeccCCcCCCCCCe
Q 039428 180 VGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHM--CSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDG 256 (335)
Q Consensus 180 ~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~--~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdG 256 (335)
+|.+++..+.+... .......+++||| .|+++.. +.-+||+++..+. ..+.+. . . . ..
T Consensus 277 ~d~~~~~~~~lt~~----------~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~--~~~~l~--~-~--~--~~ 337 (429)
T PRK01742 277 MGANGGTPSQLTSG----------AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGG--GASLVG--G-R--G--YS 337 (429)
T ss_pred EECCCCCeEeeccC----------CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCC--CeEEec--C-C--C--CC
Confidence 99876554422110 1124678999999 5665543 3448899888776 334432 2 1 1 23
Q ss_pred EEEcCCCcE-EEEecCCCeEEEEEcCCC
Q 039428 257 LALLSPTKL-VVAGNPYPSARLVESSDG 283 (335)
Q Consensus 257 ia~d~~g~l-~va~~~~~~~~v~~~~~~ 283 (335)
..+.++|+. +++.. +.+.+++...+
T Consensus 338 ~~~SpDG~~ia~~~~--~~i~~~Dl~~g 363 (429)
T PRK01742 338 AQISADGKTLVMING--DNVVKQDLTSG 363 (429)
T ss_pred ccCCCCCCEEEEEcC--CCEEEEECCCC
Confidence 567888864 34433 44666665544
No 104
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.85 E-value=0.0056 Score=59.04 Aligned_cols=160 Identities=12% Similarity=0.099 Sum_probs=93.0
Q ss_pred eeeEEcCCCCEEEEE-ecC--CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 52 ETAKWDDVGRRFLVS-FLD--GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~~--~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
..++|+|+|+.+++. ..+ ..|+++|..++. .. .+.... .......+++++..|+.+ .+..+. .
T Consensus 246 ~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-----~~---~lt~~~---~~~~~~~~spDg~~i~f~-s~~~g~--~ 311 (430)
T PRK00178 246 GAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-----LS---RVTNHP---AIDTEPFWGKDGRTLYFT-SDRGGK--P 311 (430)
T ss_pred CCeEECCCCCEEEEEEccCCCceEEEEECCCCC-----eE---EcccCC---CCcCCeEECCCCCEEEEE-ECCCCC--c
Confidence 368999999877655 333 379999865443 12 122211 123456678755566664 343332 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCC--CeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVS--SKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~--~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
.|+.+|..+++..... .. ........++|+|+ ++++.... ..|+++|.++...+.+....
T Consensus 312 ~iy~~d~~~g~~~~lt-~~-----~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~----------- 374 (430)
T PRK00178 312 QIYKVNVNGGRAERVT-FV-----GNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS----------- 374 (430)
T ss_pred eEEEEECCCCCEEEee-cC-----CCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC-----------
Confidence 6999999887654322 11 11223467889985 66654332 36899998865554332110
Q ss_pred ccCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEe
Q 039428 206 GLNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIE 244 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~ 244 (335)
......++||| .++++... ..+|+.++.++. ..+.+.
T Consensus 375 ~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~--~~~~l~ 414 (430)
T PRK00178 375 LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR--VRLPLP 414 (430)
T ss_pred CCCCceECCCCCEEEEEEecCCceEEEEEECCCC--ceEECc
Confidence 12245899999 66665543 346899998876 344443
No 105
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.83 E-value=0.0083 Score=52.59 Aligned_cols=185 Identities=14% Similarity=0.136 Sum_probs=118.1
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC--CCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG--NATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~--~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.-.+++|..+|..+..+..++++.++.....+ +...-...+ ....-+..++.+..++++.. ++
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r----------~~~~~~~~gh~~svdql~w~~~~~d~~atas---~d-- 86 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDR----------FRKELVYRGHTDSVDQLCWDPKHPDLFATAS---GD-- 86 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchh----------hhhhhcccCCCcchhhheeCCCCCcceEEec---CC--
Confidence 45799999999988777667777777642222 111111111 24556778877777776422 22
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
..|.+||...++....+.... .=.-++..|+|+..+.......|.-+|........ . .......
T Consensus 87 k~ir~wd~r~~k~~~~i~~~~------eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~--~--------~~~~~e~ 150 (313)
T KOG1407|consen 87 KTIRIWDIRSGKCTARIETKG------ENINITWSPDGEYIAVGNKDDRITFIDARTYKIVN--E--------EQFKFEV 150 (313)
T ss_pred ceEEEEEeccCcEEEEeeccC------cceEEEEcCCCCEEEEecCcccEEEEEecccceee--h--------hccccee
Confidence 259999998877664444321 11237778888766666666778888765432220 1 1123458
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
|-+++..++.+|+...+.|.|..+..-.-+ .++.+.... ..---|.+||+|+.+.++.
T Consensus 151 ne~~w~~~nd~Fflt~GlG~v~ILsypsLk-pv~si~AH~----snCicI~f~p~GryfA~Gs 208 (313)
T KOG1407|consen 151 NEISWNNSNDLFFLTNGLGCVEILSYPSLK-PVQSIKAHP----SNCICIEFDPDGRYFATGS 208 (313)
T ss_pred eeeeecCCCCEEEEecCCceEEEEeccccc-cccccccCC----cceEEEEECCCCceEeecc
Confidence 999999999999999999988777665543 555565332 2245789999999888765
No 106
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=97.83 E-value=0.0055 Score=55.49 Aligned_cols=146 Identities=16% Similarity=0.119 Sum_probs=88.8
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeec--CCcCCCCcceEEEeCCCCeEEEEEe---cCC-
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKE--DDVVGNATMGIAVDRPRNRLLVAFT---DVL- 123 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~--~~~~~~~p~Gi~~d~~~g~l~v~~~---D~~- 123 (335)
-.+.++| .+++++++...-+.+..+++ .-.+.. .-+=++++. |+.. =..+|+++.. +.--||+.- |..
T Consensus 104 diHdia~-~~~~l~fVNT~fSCLatl~~-~~SF~P--~WkPpFIs~la~eDR-CHLNGlA~~~-g~p~yVTa~~~sD~~~ 177 (335)
T TIGR03032 104 DAHDLAL-GAGRLLFVNTLFSCLATVSP-DYSFVP--LWKPPFISKLAPEDR-CHLNGMALDD-GEPRYVTALSQSDVAD 177 (335)
T ss_pred chhheee-cCCcEEEEECcceeEEEECC-CCcccc--ccCCccccccCccCc-eeecceeeeC-CeEEEEEEeeccCCcc
Confidence 3467899 67789999866678999974 333200 000012221 1110 1258999983 566777642 211
Q ss_pred ---CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccccc
Q 039428 124 ---GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKE 199 (335)
Q Consensus 124 ---~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~ 199 (335)
.++...-..+|..+++++. .++.+|..-.. .+|++|++|++.+.|.++|++ |+...+..-+
T Consensus 178 gWR~~~~~gG~vidv~s~evl~--------~GLsmPhSPRW-hdgrLwvldsgtGev~~vD~~~G~~e~Va~vp------ 242 (335)
T TIGR03032 178 GWREGRRDGGCVIDIPSGEVVA--------SGLSMPHSPRW-YQGKLWLLNSGRGELGYVDPQAGKFQPVAFLP------ 242 (335)
T ss_pred cccccccCCeEEEEeCCCCEEE--------cCccCCcCCcE-eCCeEEEEECCCCEEEEEcCCCCcEEEEEECC------
Confidence 1222233346777776652 12566666665 368999999999999999997 7766543222
Q ss_pred ccccccccCeEEEccCC-eEEEEEC
Q 039428 200 WYKNVFGLNGIVYHPDG-FLIVIHM 223 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg-~Lyvad~ 223 (335)
..|.||++. | .++|+-+
T Consensus 243 -----G~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 243 -----GFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred -----CCCccccee--CCEEEEEec
Confidence 248999999 6 6666644
No 107
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.82 E-value=0.013 Score=51.53 Aligned_cols=209 Identities=17% Similarity=0.173 Sum_probs=124.6
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
.-+.+..+|.++|.+..+...-+|-..+|+. +. .-.+.. +....+.+|-+...+.-.++| ..+.
T Consensus 14 TqiKyN~eGDLlFscaKD~~~~vw~s~nGer----lG-----ty~GHt-GavW~~Did~~s~~liTGSAD------~t~k 77 (327)
T KOG0643|consen 14 TQIKYNREGDLLFSCAKDSTPTVWYSLNGER----LG-----TYDGHT-GAVWCCDIDWDSKHLITGSAD------QTAK 77 (327)
T ss_pred ceEEecCCCcEEEEecCCCCceEEEecCCce----ee-----eecCCC-ceEEEEEecCCcceeeecccc------ceeE
Confidence 4678899999999987666555554334651 22 112222 245667777544555443333 2478
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEE--EeC---CCCeEEEEccCCcEEEEec-CCcccccccccccc
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYV--TDV---VSSKIWKVGVEGQLLSIIR-SPLFTAKEWYKNVF 205 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV--~d~---~~~~I~~~d~~g~~~~~~~-~~~~~~~~~~~~~~ 205 (335)
.||.++|+.+.....+. ....+.|+.+|++.+ +|. ....|..+|.......... .+.+..+. .-.
T Consensus 78 LWDv~tGk~la~~k~~~------~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t---~~s 148 (327)
T KOG0643|consen 78 LWDVETGKQLATWKTNS------PVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT---PDS 148 (327)
T ss_pred EEEcCCCcEEEEeecCC------eeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC---Ccc
Confidence 89999998886665532 234688899998444 442 3566777765421111000 11111110 113
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcE
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWE 285 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~ 285 (335)
.++-..++|-+.-+++-..++.|.++|...++..+....... .....|.+.++..+|++........+++..
T Consensus 149 kit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~----~~Ind~q~s~d~T~FiT~s~Dttakl~D~~---- 220 (327)
T KOG0643|consen 149 KITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHS----SKINDLQFSRDRTYFITGSKDTTAKLVDVR---- 220 (327)
T ss_pred ceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhc----cccccccccCCcceEEecccCccceeeecc----
Confidence 478888999886667777899999999998642333322222 236789999999999997655555666654
Q ss_pred EEEEeeee
Q 039428 286 TASVVAKF 293 (335)
Q Consensus 286 ~~~~~~~~ 293 (335)
..+++.++
T Consensus 221 tl~v~Kty 228 (327)
T KOG0643|consen 221 TLEVLKTY 228 (327)
T ss_pred ceeeEEEe
Confidence 23455554
No 108
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.81 E-value=0.0016 Score=64.24 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=50.2
Q ss_pred CCCCCCceeECCC-CcEEEEeCCC-------------------CeEEEEccCCc-------EEEE--e-cCCcc-----c
Q 039428 152 EKSTADDIAVDAE-GNAYVTDVVS-------------------SKIWKVGVEGQ-------LLSI--I-RSPLF-----T 196 (335)
Q Consensus 152 ~~~~p~~~~vd~~-G~lyV~d~~~-------------------~~I~~~d~~g~-------~~~~--~-~~~~~-----~ 196 (335)
++.+|.+++++|. |.+|++.+.+ |.|+++++++. ...+ . +++.. .
T Consensus 348 ~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~ 427 (524)
T PF05787_consen 348 PFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGS 427 (524)
T ss_pred cccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCccccccccc
Confidence 3899999999996 8999986544 48999998765 2211 1 11100 0
Q ss_pred cccccccccccCeEEEccCCeEEEEECCC
Q 039428 197 AKEWYKNVFGLNGIVYHPDGFLIVIHMCS 225 (335)
Q Consensus 197 ~~~~~~~~~~p~Gia~~~dg~Lyvad~~~ 225 (335)
.......+.+|.+|+++++|+||++.-.+
T Consensus 428 ~~~~~~~f~sPDNL~~d~~G~LwI~eD~~ 456 (524)
T PF05787_consen 428 NKCDDNGFASPDNLAFDPDGNLWIQEDGG 456 (524)
T ss_pred CcccCCCcCCCCceEECCCCCEEEEeCCC
Confidence 01123456689999999999999886544
No 109
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=97.80 E-value=0.0035 Score=54.58 Aligned_cols=151 Identities=13% Similarity=0.127 Sum_probs=100.3
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..+.|....+.++.+..++.|.-||-.++. .+. .+..+. .+..+.++. +|++... ++. +.|.
T Consensus 147 r~v~wc~eD~~iLSSadd~tVRLWD~rTgt----~v~---sL~~~s----~VtSlEvs~-dG~ilTi-a~g-----ssV~ 208 (334)
T KOG0278|consen 147 RTVLWCHEDKCILSSADDKTVRLWDHRTGT----EVQ---SLEFNS----PVTSLEVSQ-DGRILTI-AYG-----SSVK 208 (334)
T ss_pred eeEEEeccCceEEeeccCCceEEEEeccCc----EEE---EEecCC----CCcceeecc-CCCEEEE-ecC-----ceeE
Confidence 455677777777777778999999865554 122 233332 567899986 6777654 443 4588
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIV 211 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia 211 (335)
-+|+.+-.++..... +...+.....|+-.+||+......++++|-+..... ..+.+. ...-...+.
T Consensus 209 Fwdaksf~~lKs~k~------P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi----~~~nkg----h~gpVhcVr 274 (334)
T KOG0278|consen 209 FWDAKSFGLLKSYKM------PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEI----GSYNKG----HFGPVHCVR 274 (334)
T ss_pred EeccccccceeeccC------ccccccccccCCCceEEecCcceEEEEEeccCCcee----eecccC----CCCceEEEE
Confidence 899988666544333 223345667788889999988999999998754433 122110 111268999
Q ss_pred EccCCeEEEEECCCCEEEEEeCC
Q 039428 212 YHPDGFLIVIHMCSGNLFKIDIR 234 (335)
Q Consensus 212 ~~~dg~Lyvad~~~~~v~~~d~~ 234 (335)
|+|||.+|.+-+.+|.|......
T Consensus 275 FSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 275 FSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred ECCCCceeeccCCCceEEEEEec
Confidence 99999999999888866544443
No 110
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.79 E-value=0.00084 Score=63.07 Aligned_cols=204 Identities=14% Similarity=0.086 Sum_probs=129.0
Q ss_pred EEEcCCCcceeeeEEcC-CCCEEEEEecCCeEEEEECCC-CCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE
Q 039428 42 YQYHSPSFLCETAKWDD-VGRRFLVSFLDGGVGQVLVPD-EYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF 119 (335)
Q Consensus 42 ~~~~~~~~~pegia~d~-~g~~~~~~~~~~~I~~~d~~~-g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~ 119 (335)
+.+.+-...-..+-|-| .++++..+..++.|+.|+.-+ ++ .+. ++ .+.. .....+.++...-++.-+.
T Consensus 208 ~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~----~lr--tf---~gH~-k~Vrd~~~s~~g~~fLS~s 277 (503)
T KOG0282|consen 208 HNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRR----CLR--TF---KGHR-KPVRDASFNNCGTSFLSAS 277 (503)
T ss_pred eeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcc----eeh--hh---hcch-hhhhhhhccccCCeeeeee
Confidence 33433333345566777 566655557788988887533 22 111 12 1111 2346777875333444433
Q ss_pred ecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEEecCCccccc
Q 039428 120 TDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAK 198 (335)
Q Consensus 120 ~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~ 198 (335)
-| ..|..||.++|+....... ...|..+.+.|++ ++|++....++|..+|.....+. ..+..
T Consensus 278 fD------~~lKlwDtETG~~~~~f~~------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvv----qeYd~- 340 (503)
T KOG0282|consen 278 FD------RFLKLWDTETGQVLSRFHL------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVV----QEYDR- 340 (503)
T ss_pred cc------eeeeeeccccceEEEEEec------CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHH----HHHHh-
Confidence 33 2488899999988755444 3567889999998 89999999999999998643321 12221
Q ss_pred cccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEE
Q 039428 199 EWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLV 278 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~ 278 (335)
.+...+.|.|-++|.-+|+.+....+..++...+- ..+.+.-... ...| -+++.|++.++++.+..|.+.++
T Consensus 341 ----hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v-~ik~i~~~~~--hsmP-~~~~~P~~~~~~aQs~dN~i~if 412 (503)
T KOG0282|consen 341 ----HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPV-PIKNIADPEM--HTMP-CLTLHPNGKWFAAQSMDNYIAIF 412 (503)
T ss_pred ----hhhheeeeEEccCCceEeeeccCccEEEEEcCCCc-cchhhcchhh--ccCc-ceecCCCCCeehhhccCceEEEE
Confidence 23347899999999889988888877777766541 1122221221 2345 58999999999997766877766
Q ss_pred Ec
Q 039428 279 ES 280 (335)
Q Consensus 279 ~~ 280 (335)
..
T Consensus 413 s~ 414 (503)
T KOG0282|consen 413 ST 414 (503)
T ss_pred ec
Confidence 54
No 111
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.73 E-value=0.0066 Score=56.99 Aligned_cols=197 Identities=16% Similarity=0.182 Sum_probs=118.4
Q ss_pred eeeeEEcCCCCEEEEEecCC--eEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCe-EEEEEecCCCCcc
Q 039428 51 CETAKWDDVGRRFLVSFLDG--GVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNR-LLVAFTDVLGNKY 127 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~--~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~-l~v~~~D~~~~~~ 127 (335)
..++-++|.-.++.+...++ +||.+| ...+. .+....+-.+| ..-.++.+ +|. ..++ +. ++
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvD-Gk~N~---~lqS~~l~~fP------i~~a~f~p-~G~~~i~~-s~---rr- 279 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVD-GKVNP---KLQSIHLEKFP------IQKAEFAP-NGHSVIFT-SG---RR- 279 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEec-CccCh---hheeeeeccCc------cceeeecC-CCceEEEe-cc---cc-
Confidence 46889999999998885555 567776 22221 12111111111 23456665 555 3332 22 22
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
..++.||+.+.++.......+. +.....-..|.+++++.+....+|-|+.+...++... ..|..+ ...
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~--e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli----~s~Kie------G~v 347 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGV--EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELI----TSFKIE------GVV 347 (514)
T ss_pred eEEEEeeccccccccccCCCCc--ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhh----heeeec------cEE
Confidence 4689999998877643333221 1234455788999987777778899999988755432 123322 136
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
.+++|+.|+..+++..+.|+||++|++... ....+...|. -.-.-++...+|.++.++..++-+.+++
T Consensus 348 ~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~-~~~rf~D~G~---v~gts~~~S~ng~ylA~GS~~GiVNIYd 415 (514)
T KOG2055|consen 348 SDFTFSSDSKELLASGGTGEVYVWNLRQNS-CLHRFVDDGS---VHGTSLCISLNGSYLATGSDSGIVNIYD 415 (514)
T ss_pred eeEEEecCCcEEEEEcCCceEEEEecCCcc-eEEEEeecCc---cceeeeeecCCCceEEeccCcceEEEec
Confidence 789999999555555678899999999874 5555554442 1233455557777655565444444444
No 112
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=97.72 E-value=0.02 Score=51.64 Aligned_cols=120 Identities=18% Similarity=0.166 Sum_probs=79.2
Q ss_pred cceEEEeC--CCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCcc-CCCCCCceeECCCCcEEEEe--------
Q 039428 103 TMGIAVDR--PRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSE-EKSTADDIAVDAEGNAYVTD-------- 171 (335)
Q Consensus 103 p~Gi~~d~--~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~p~~~~vd~~G~lyV~d-------- 171 (335)
-.|+++.. ..+.||+ +|..+. +|-+||-.=.++.....+..|.- ....|.+|..- .|++||+=
T Consensus 140 YkGLAi~~~~~~~~LYa--adF~~g---~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~~~ 213 (336)
T TIGR03118 140 YKGLAVGPTGGGDYLYA--ANFRQG---RIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDADRN 213 (336)
T ss_pred eeeeEEeecCCCceEEE--eccCCC---ceEEecCccccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCccc
Confidence 36777753 2578999 576544 58888854322221111212211 13556666542 47899972
Q ss_pred -----CCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccC------CeEEEEECCCCEEEEEeCCCC
Q 039428 172 -----VVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD------GFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 172 -----~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d------g~Lyvad~~~~~v~~~d~~~~ 236 (335)
...+-|-+||++|+.++.+.+. +.+..|-||++.|. |.|+|.+.++++|-.||+.++
T Consensus 214 d~v~G~G~G~VdvFd~~G~l~~r~as~--------g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG 281 (336)
T TIGR03118 214 DEVAGAGLGYVNVFTLNGQLLRRVASS--------GRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSG 281 (336)
T ss_pred ccccCCCcceEEEEcCCCcEEEEeccC--------CcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCC
Confidence 2357899999999998855332 13456999999773 589999999999999999865
No 113
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.72 E-value=0.0067 Score=56.33 Aligned_cols=231 Identities=14% Similarity=0.236 Sum_probs=133.6
Q ss_pred cCCCcceeeeEEcCC-CC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 45 HSPSFLCETAKWDDV-GR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 45 ~~~~~~pegia~d~~-g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
.+-....-++.|+|. .+ -+.....+|++--|+. ++..| +. ...+ .+.+..-++++| +|+...+.+ .
T Consensus 214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~-~~e~~---l~-----~l~g-H~~RVs~VafHP-sG~~L~Tas-f 281 (459)
T KOG0272|consen 214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL-SQETP---LQ-----DLEG-HLARVSRVAFHP-SGKFLGTAS-F 281 (459)
T ss_pred eccccceeeEEEccCCCccceeeeccCCceeeecc-CCCcc---hh-----hhhc-chhhheeeeecC-CCceeeecc-c
Confidence 333345668889987 34 4444477887777753 33311 11 1111 113567899998 677766421 1
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC--CeEEEEccCCcEEEEecCCccccccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS--SKIWKVGVEGQLLSIIRSPLFTAKEW 200 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~--~~I~~~d~~g~~~~~~~~~~~~~~~~ 200 (335)
+ +.-..||.+++..... .. +. -....++++.+||.+..+.... ++||=+.. |+.+-++. +.
T Consensus 282 --D--~tWRlWD~~tk~ElL~--QE--GH-s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRt-gr~im~L~-gH------ 344 (459)
T KOG0272|consen 282 --D--STWRLWDLETKSELLL--QE--GH-SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRT-GRCIMFLA-GH------ 344 (459)
T ss_pred --c--cchhhcccccchhhHh--hc--cc-ccccceeEecCCCceeeccCccchhheeeccc-CcEEEEec-cc------
Confidence 1 2466789888754421 11 11 3456789999999999886653 55554433 33333232 11
Q ss_pred cccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC-CCcEEEEecCCCeEEEEE
Q 039428 201 YKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS-PTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~-~g~l~va~~~~~~~~v~~ 279 (335)
....-+++|+|.|+...+-+.++++.+.|+...+ .+..++.. -+....+.+.+ .|...++....+.+++..
T Consensus 345 ---~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~-~ly~ipAH----~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs 416 (459)
T KOG0272|consen 345 ---IKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRS-ELYTIPAH----SNLVSQVKYSPQEGYFLVTASYDNTVKIWS 416 (459)
T ss_pred ---ccceeeEeECCCceEEeecCCCCcEEEeeecccc-cceecccc----cchhhheEecccCCeEEEEcccCcceeeec
Confidence 1227899999999999999899988888888764 44455432 23467899998 466667755456666654
Q ss_pred cCCCcEEEEEeeeecCCCCCcceEEEEe-CCeEEEEecc
Q 039428 280 SSDGWETASVVAKFNGPTHRVATAATVK-DGRVYLSHLL 317 (335)
Q Consensus 280 ~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g~lyV~~~~ 317 (335)
..+|... ..+.+..... .++.+. ++...++..+
T Consensus 417 -~~~~~~~---ksLaGHe~kV-~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 417 -TRTWSPL---KSLAGHEGKV-ISLDISPDSQAIATSSF 450 (459)
T ss_pred -CCCcccc---hhhcCCccce-EEEEeccCCceEEEecc
Confidence 3445432 3332332221 345554 4444445443
No 114
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.72 E-value=0.051 Score=53.42 Aligned_cols=191 Identities=18% Similarity=0.202 Sum_probs=98.4
Q ss_pred eEEEeCCCCeEEEEEecCC------------CCccceEEEEECCCCeEEEEeecCCCc----cCCCCCC--ceeECCCCc
Q 039428 105 GIAVDRPRNRLLVAFTDVL------------GNKYSALAAYDLSTWKRLFLTQLSGKS----EEKSTAD--DIAVDAEGN 166 (335)
Q Consensus 105 Gi~~d~~~g~l~v~~~D~~------------~~~~~~v~~~d~~~~~~~~~~~~~~~~----~~~~~p~--~~~vd~~G~ 166 (335)
..++|+.++.+|+...+.. +...+.|+.+|.++|+.++......+. .....|. ++. +-+|.
T Consensus 221 ~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~ 299 (488)
T cd00216 221 SPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGK 299 (488)
T ss_pred CeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecc-ccCCC
Confidence 4677766789999654321 001136999999999998776542210 0011111 111 12343
Q ss_pred ----EEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeEEEccCCeEEEEE-----------------CC
Q 039428 167 ----AYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIH-----------------MC 224 (335)
Q Consensus 167 ----lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad-----------------~~ 224 (335)
+|+. +..+.++.+|++ |+.+.... . .-.+++.++ +.+|+.. ..
T Consensus 300 ~~~~V~~g-~~~G~l~ald~~tG~~~W~~~---~----------~~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~ 364 (488)
T cd00216 300 PVPAIVHA-PKNGFFYVLDRTTGKLISARP---E----------VEQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPG 364 (488)
T ss_pred eeEEEEEE-CCCceEEEEECCCCcEeeEeE---e----------eccccccCC-ceEEEccccccccCcccccCCCCCCC
Confidence 5554 567899999986 44433110 0 013445554 6777642 13
Q ss_pred CCEEEEEeCCCCceeEEEEeccCCc---CCCCC--Ce-EEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCC--
Q 039428 225 SGNLFKIDIRKEEEEVKLIELRGGS---SLSLG--DG-LALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGP-- 296 (335)
Q Consensus 225 ~~~v~~~d~~~~~~~~~~~~~~g~~---~~~~p--dG-ia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p-- 296 (335)
.++|+.+|..+++ .+-..+..... .+..| .+ +++ ..+.+|+.+. .+.+..++..+| +.+-++..+
T Consensus 365 ~G~l~AlD~~tG~-~~W~~~~~~~~~~~~~g~~~~~~~~~~-~g~~v~~g~~-dG~l~ald~~tG----~~lW~~~~~~~ 437 (488)
T cd00216 365 KGGLAALDPKTGK-VVWEKREGTIRDSWNIGFPHWGGSLAT-AGNLVFAGAA-DGYFRAFDATTG----KELWKFRTPSG 437 (488)
T ss_pred ceEEEEEeCCCCc-EeeEeeCCccccccccCCcccCcceEe-cCCeEEEECC-CCeEEEEECCCC----ceeeEEECCCC
Confidence 5789999988874 22223322000 00011 12 333 3467888754 356777776665 222222212
Q ss_pred CCCcceEEEE-eCCeEEEEeccCCC
Q 039428 297 THRVATAATV-KDGRVYLSHLLGLG 320 (335)
Q Consensus 297 ~~~~Pt~va~-~~g~lyV~~~~~~~ 320 (335)
....| +++ .+|++||....|.+
T Consensus 438 ~~a~P--~~~~~~g~~yv~~~~g~~ 460 (488)
T cd00216 438 IQATP--MTYEVNGKQYVGVMVGGG 460 (488)
T ss_pred ceEcC--EEEEeCCEEEEEEEecCC
Confidence 11112 333 58999997666543
No 115
>PRK04043 tolB translocation protein TolB; Provisional
Probab=97.70 E-value=0.023 Score=54.71 Aligned_cols=158 Identities=12% Similarity=0.106 Sum_probs=92.7
Q ss_pred eeEEcCCCCEEEEE-ec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 53 TAKWDDVGRRFLVS-FL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 53 gia~d~~g~~~~~~-~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
...|+|+|+.+++. .. +..|+.++..++. .. ++...+. ......++|++.+|+.++ |..+. ..
T Consensus 237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-----~~--~LT~~~~----~d~~p~~SPDG~~I~F~S-dr~g~--~~ 302 (419)
T PRK04043 237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-----LT--QITNYPG----IDVNGNFVEDDKRIVFVS-DRLGY--PN 302 (419)
T ss_pred eeEECCCCCEEEEEEccCCCcEEEEEECCCCc-----EE--EcccCCC----ccCccEECCCCCEEEEEE-CCCCC--ce
Confidence 46899999766555 32 3589999864443 12 1211221 122346787555777753 43332 46
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc--EEEEeCC-------CCeEEEEccCCcEEEEecCCccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN--AYVTDVV-------SSKIWKVGVEGQLLSIIRSPLFTAKEW 200 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~--lyV~d~~-------~~~I~~~d~~g~~~~~~~~~~~~~~~~ 200 (335)
|+++|.++++....... + .. + ..++|||+ +|++... ...|+.++.++...+.+...
T Consensus 303 Iy~~dl~~g~~~rlt~~---g--~~--~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~------- 367 (419)
T PRK04043 303 IFMKKLNSGSVEQVVFH---G--KN--N-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTAN------- 367 (419)
T ss_pred EEEEECCCCCeEeCccC---C--Cc--C-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCC-------
Confidence 99999998876432211 1 11 2 47899986 3444322 15899999886655433211
Q ss_pred cccccccCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEec
Q 039428 201 YKNVFGLNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIEL 245 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~ 245 (335)
..-....++||| .|+++... ...|+.+++++. ..+.+..
T Consensus 368 ----~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~--~~~~l~~ 409 (419)
T PRK04043 368 ----GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN--KSFLFPL 409 (419)
T ss_pred ----CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC--eeEEeec
Confidence 012347899999 56555433 336999999987 4455543
No 116
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.68 E-value=0.071 Score=52.89 Aligned_cols=83 Identities=14% Similarity=0.065 Sum_probs=50.8
Q ss_pred ceEEEeCCCCeEEEEEecC----CC----Cc--cceEEEEECCCCeEEEEeecCCCcc----CCCCCCceeECCCCc---
Q 039428 104 MGIAVDRPRNRLLVAFTDV----LG----NK--YSALAAYDLSTWKRLFLTQLSGKSE----EKSTADDIAVDAEGN--- 166 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~----~~----~~--~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~p~~~~vd~~G~--- 166 (335)
..+++|++.+.+|+.+... .. +. .+.|+.+|++||++++..+...... ....|.=+.++.+|+
T Consensus 237 ~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~ 316 (527)
T TIGR03075 237 GTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRK 316 (527)
T ss_pred CceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEE
Confidence 4678999899999976431 11 11 2589999999999987655421100 012222222234554
Q ss_pred EEEEeCCCCeEEEEccC-CcE
Q 039428 167 AYVTDVVSSKIWKVGVE-GQL 186 (335)
Q Consensus 167 lyV~d~~~~~I~~~d~~-g~~ 186 (335)
+.+.-..+|.+|++|+. |+.
T Consensus 317 ~v~~~~K~G~~~vlDr~tG~~ 337 (527)
T TIGR03075 317 LLAHADRNGFFYVLDRTNGKL 337 (527)
T ss_pred EEEEeCCCceEEEEECCCCce
Confidence 66667778888888876 454
No 117
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.67 E-value=0.0098 Score=51.99 Aligned_cols=151 Identities=21% Similarity=0.242 Sum_probs=84.3
Q ss_pred CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeE
Q 039428 61 RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKR 140 (335)
Q Consensus 61 ~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~ 140 (335)
+.+|+...+++|+.+|..+|+ ++-+......+......+....++ ++.+|+... . ..|+.+|+++|++
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~----~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~----g~l~~~d~~tG~~ 144 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGK----VLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGTS--S----GKLVALDPKTGKL 144 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSC----EEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEET--C----SEEEEEETTTTEE
T ss_pred cccccccceeeeEecccCCcc----eeeeeccccccccccccccCceEe--cCEEEEEec--c----CcEEEEecCCCcE
Confidence 344444456799999976776 121100000111111233445555 678888532 2 4699999999999
Q ss_pred EEEeecCCCccCC-----CC-CCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEcc
Q 039428 141 LFLTQLSGKSEEK-----ST-ADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHP 214 (335)
Q Consensus 141 ~~~~~~~~~~~~~-----~~-p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~ 214 (335)
++......+.... .. ...+.++ +|++|++.... .++.+|....... +... + ..+.++....
T Consensus 145 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~g-~~~~~d~~tg~~~-w~~~-~---------~~~~~~~~~~ 211 (238)
T PF13360_consen 145 LWKYPVGEPRGSSPISSFSDINGSPVIS-DGRVYVSSGDG-RVVAVDLATGEKL-WSKP-I---------SGIYSLPSVD 211 (238)
T ss_dssp EEEEESSTT-SS--EEEETTEEEEEECC-TTEEEEECCTS-SEEEEETTTTEEE-EEEC-S---------S-ECECEECC
T ss_pred EEEeecCCCCCCcceeeecccccceEEE-CCEEEEEcCCC-eEEEEECCCCCEE-EEec-C---------CCccCCceee
Confidence 8777663211000 00 1223333 55899986554 4677787755433 2211 1 1244434444
Q ss_pred CCeEEEEECCCCEEEEEeCCCCc
Q 039428 215 DGFLIVIHMCSGNLFKIDIRKEE 237 (335)
Q Consensus 215 dg~Lyvad~~~~~v~~~d~~~~~ 237 (335)
++.||+.+ ..++|+.+|+.+++
T Consensus 212 ~~~l~~~~-~~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 212 GGTLYVTS-SDGRLYALDLKTGK 233 (238)
T ss_dssp CTEEEEEE-TTTEEEEEETTTTE
T ss_pred CCEEEEEe-CCCEEEEEECCCCC
Confidence 66999998 78999999999873
No 118
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.65 E-value=0.055 Score=50.83 Aligned_cols=199 Identities=17% Similarity=0.164 Sum_probs=99.9
Q ss_pred CCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCc------ceEEEeCCCCe--EEEEEecCCC-Cccc
Q 039428 58 DVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNAT------MGIAVDRPRNR--LLVAFTDVLG-NKYS 128 (335)
Q Consensus 58 ~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p------~Gi~~d~~~g~--l~v~~~D~~~-~~~~ 128 (335)
|...+++.+...+.++++|. +|+ .+. .+.. .++ .|+.+. +.. |-++ .+... ...-
T Consensus 66 p~kSlIigTdK~~GL~VYdL-~Gk----~lq---~~~~-----Gr~NNVDvrygf~l~--g~~vDlava-s~R~~g~n~l 129 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDL-DGK----ELQ---SLPV-----GRPNNVDVRYGFPLN--GKTVDLAVA-SDRSDGRNSL 129 (381)
T ss_dssp GGG-EEEEEETTTEEEEEET-TS-----EEE---EE-S-----S-EEEEEEEEEEEET--TEEEEEEEE-EE-CCCT-EE
T ss_pred cccceEEEEeCCCCEEEEcC-CCc----EEE---eecC-----CCcceeeeecceecC--CceEEEEEE-ecCcCCCCeE
Confidence 44456666677889999995 576 122 2211 133 333332 222 3343 33321 1113
Q ss_pred eEEEEECCCCeEEEEeecCCC-ccCCCCCCceeEC--C-CCcEEEE-eCCCCeEEE--Ecc--CCcEE-EEecCCccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGK-SEEKSTADDIAVD--A-EGNAYVT-DVVSSKIWK--VGV--EGQLL-SIIRSPLFTAK 198 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~-~~~~~~p~~~~vd--~-~G~lyV~-d~~~~~I~~--~d~--~g~~~-~~~~~~~~~~~ 198 (335)
+++++|++++.+....+...+ ......+.|++.- + +|.+|+- ....|.+.. +.. +|... +.. ..|..
T Consensus 130 ~~f~id~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lV--R~f~~- 206 (381)
T PF02333_consen 130 RLFRIDPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLV--REFKV- 206 (381)
T ss_dssp EEEEEETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEE--EEEE--
T ss_pred EEEEecCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEE--EEecC-
Confidence 588889888866533322111 1124557788873 3 4665542 223355543 332 23221 111 12221
Q ss_pred cccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCce-eEEEEe-ccCCcCCCCCCeEEEc--CC--CcEEEEecC
Q 039428 199 EWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEE-EVKLIE-LRGGSSLSLGDGLALL--SP--TKLVVAGNP 271 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~-~~~~~~-~~g~~~~~~pdGia~d--~~--g~l~va~~~ 271 (335)
...+.|+++|.+. +||+++... -||+++.+...+ ..+.+. ..+.....-..||++- .+ |-|++++.+
T Consensus 207 -----~sQ~EGCVVDDe~g~LYvgEE~~-GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG 280 (381)
T PF02333_consen 207 -----GSQPEGCVVDDETGRLYVGEEDV-GIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQG 280 (381)
T ss_dssp -----SS-EEEEEEETTTTEEEEEETTT-EEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGG
T ss_pred -----CCcceEEEEecccCCEEEecCcc-EEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCC
Confidence 1258999999864 999999765 599999986421 233443 2332322457899994 33 457777776
Q ss_pred CCeEEEEEcC
Q 039428 272 YPSARLVESS 281 (335)
Q Consensus 272 ~~~~~v~~~~ 281 (335)
.++-.|++-.
T Consensus 281 ~~sf~Vy~r~ 290 (381)
T PF02333_consen 281 DNSFAVYDRE 290 (381)
T ss_dssp GTEEEEEESS
T ss_pred CCeEEEEecC
Confidence 6777777643
No 119
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.64 E-value=0.021 Score=59.63 Aligned_cols=194 Identities=10% Similarity=0.101 Sum_probs=116.8
Q ss_pred eeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 52 ETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 52 egia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
.+++|++. ++.++++..++.|..||..+++ .+. .+ .+.. .....+++++.++.++++.... ..|
T Consensus 536 ~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~----~~~---~~--~~H~-~~V~~l~~~p~~~~~L~Sgs~D-----g~v 600 (793)
T PLN00181 536 SGICWNSYIKSQVASSNFEGVVQVWDVARSQ----LVT---EM--KEHE-KRVWSIDYSSADPTLLASGSDD-----GSV 600 (793)
T ss_pred eeEEeccCCCCEEEEEeCCCeEEEEECCCCe----EEE---Ee--cCCC-CCEEEEEEcCCCCCEEEEEcCC-----CEE
Confidence 57788775 5555555778999999964443 111 11 1111 3467899986456666543211 359
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeE-CCCCcEEEEeCCCCeEEEEccCCcE--EEEecCCcccccccccccccc
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAV-DAEGNAYVTDVVSSKIWKVGVEGQL--LSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~v-d~~G~lyV~d~~~~~I~~~d~~g~~--~~~~~~~~~~~~~~~~~~~~p 207 (335)
..||..++........ ......+.+ .++|+.+++.+..+.|+.+|..... ...+. . .....
T Consensus 601 ~iWd~~~~~~~~~~~~------~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~-----~-----h~~~V 664 (793)
T PLN00181 601 KLWSINQGVSIGTIKT------KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMI-----G-----HSKTV 664 (793)
T ss_pred EEEECCCCcEEEEEec------CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEec-----C-----CCCCE
Confidence 9999987765533221 123345666 3568888888889999999976322 11111 0 11235
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCc-----eeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEE-----EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~-----~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
..+++. ++..+++-+.++.|..+|+.... .....+. + . .....-+++++++.++++....+.+.+.+..
T Consensus 665 ~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~--g-h-~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 665 SYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFM--G-H-TNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred EEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEc--C-C-CCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 677886 66556666678888888876421 0223332 2 1 1235678899988877776655777776643
No 120
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.59 E-value=0.0064 Score=57.06 Aligned_cols=231 Identities=11% Similarity=0.074 Sum_probs=136.3
Q ss_pred eeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 52 ETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 52 egia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
....+.|+|. ..+++....-+|.||..+.+ +. ++-...++......-..+++ .+.+.+. +... +.|
T Consensus 261 ~~a~f~p~G~~~i~~s~rrky~ysyDle~ak-----~~--k~~~~~g~e~~~~e~FeVSh-d~~fia~-~G~~----G~I 327 (514)
T KOG2055|consen 261 QKAEFAPNGHSVIFTSGRRKYLYSYDLETAK-----VT--KLKPPYGVEEKSMERFEVSH-DSNFIAI-AGNN----GHI 327 (514)
T ss_pred ceeeecCCCceEEEecccceEEEEeeccccc-----cc--cccCCCCcccchhheeEecC-CCCeEEE-cccC----ceE
Confidence 5678899998 66666767789999975443 12 12111111112445667776 4443332 3222 348
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
..+-..+++.+....+ .+...+++++.||+ +|++ ...|.||++|........ .|... +...-..
T Consensus 328 ~lLhakT~eli~s~Ki------eG~v~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~~~~~----rf~D~----G~v~gts 392 (514)
T KOG2055|consen 328 HLLHAKTKELITSFKI------EGVVSDFTFSSDSKELLAS-GGTGEVYVWNLRQNSCLH----RFVDD----GSVHGTS 392 (514)
T ss_pred Eeehhhhhhhhheeee------ccEEeeEEEecCCcEEEEE-cCCceEEEEecCCcceEE----EEeec----Cccceee
Confidence 8887788877644333 23456899999986 5555 556799999987543221 12211 1234567
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCC--ceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEec-CCCeEEEEEcCCCcE
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKE--EEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGN-PYPSARLVESSDGWE 285 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~--~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~-~~~~~~v~~~~~~~~ 285 (335)
+|.+.+|.++.+-+..|-|-.+|.+.- ...++.+.... ..-...+.|.+.++.. |.+|.. ..+.++.+..+.
T Consensus 393 ~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d-NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS--- 468 (514)
T KOG2055|consen 393 LCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD-NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPS--- 468 (514)
T ss_pred eeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhh-hhheeeeeeeeCcchhhhhhhhhccccceEEEeccc---
Confidence 888899998888888999888886652 00222221111 1012357889998875 555533 346788888753
Q ss_pred EEEEeeeecCC--CCCcceEEEEe--CCeEEEEe
Q 039428 286 TASVVAKFNGP--THRVATAATVK--DGRVYLSH 315 (335)
Q Consensus 286 ~~~~~~~~~~p--~~~~Pt~va~~--~g~lyV~~ 315 (335)
.++...+..+ ...++++++|. +|.+-|..
T Consensus 469 -~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN 501 (514)
T KOG2055|consen 469 -CTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN 501 (514)
T ss_pred -eeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence 2333333211 24567889995 67777744
No 121
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=97.58 E-value=0.0016 Score=64.08 Aligned_cols=118 Identities=25% Similarity=0.355 Sum_probs=70.2
Q ss_pred CCcceEEEeCCCCeEEEEEecCC--------------CCccceEEEEECCCC-------eEE-EEeecC-----------
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVL--------------GNKYSALAAYDLSTW-------KRL-FLTQLS----------- 147 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~--------------~~~~~~v~~~d~~~~-------~~~-~~~~~~----------- 147 (335)
.+|.+|.+++.++.+|++..+.. .+...+|++|+++.+ ... +.....
T Consensus 350 ~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~~~~ 429 (524)
T PF05787_consen 350 DRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNGSNK 429 (524)
T ss_pred cCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccccCc
Confidence 56899999998999999865443 222368999998765 222 111111
Q ss_pred CCccCCCCCCceeECCCCcEEEEe-CCCCe--EEEEccCCcEEEEec---------C------CccccccccccccccCe
Q 039428 148 GKSEEKSTADDIAVDAEGNAYVTD-VVSSK--IWKVGVEGQLLSIIR---------S------PLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 148 ~~~~~~~~p~~~~vd~~G~lyV~d-~~~~~--I~~~d~~g~~~~~~~---------~------~~~~~~~~~~~~~~p~G 209 (335)
.....+..|..|+||++|+|||+. ...+. |.-..++|....+.. . ..|. ..+......|
T Consensus 430 ~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~---~~P~gaE~tG 506 (524)
T PF05787_consen 430 CDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFL---VGPNGAEITG 506 (524)
T ss_pred ccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeec---cCCCCccccc
Confidence 012237899999999999999973 33222 223333332211100 0 0111 0123344789
Q ss_pred EEEccCC-eEEEE
Q 039428 210 IVYHPDG-FLIVI 221 (335)
Q Consensus 210 ia~~~dg-~Lyva 221 (335)
++++||+ .|||.
T Consensus 507 ~~fspDg~tlFvn 519 (524)
T PF05787_consen 507 PCFSPDGRTLFVN 519 (524)
T ss_pred ceECCCCCEEEEE
Confidence 9999999 88875
No 122
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.57 E-value=0.046 Score=51.80 Aligned_cols=209 Identities=14% Similarity=0.114 Sum_probs=96.4
Q ss_pred CCCEEEEE-ecCCeEEEEECCC-CCCCcceeeeeEEeecCCcC---C-CCcceEEEeCCCCeEEEEE-ecCCCCccceEE
Q 039428 59 VGRRFLVS-FLDGGVGQVLVPD-EYSPGTVLEEVKLVKEDDVV---G-NATMGIAVDRPRNRLLVAF-TDVLGNKYSALA 131 (335)
Q Consensus 59 ~g~~~~~~-~~~~~I~~~d~~~-g~~~~~v~~~~~~~~~~~~~---~-~~p~Gi~~d~~~g~l~v~~-~D~~~~~~~~v~ 131 (335)
+.+.+++- ..+++||++|... -+.| + +. +++...++. + ..|+-+..-+ +|+++|.. +|..++....++
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P-~-l~--KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~ 160 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKP-R-LH--KVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFV 160 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS--E-EE--EEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCC-c-eE--eeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEE
Confidence 44555555 7789999999542 2222 1 22 244211111 1 2567777776 78888865 343333346899
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC--------------------CCCeEEEEccCCcEE-EEe
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV--------------------VSSKIWKVGVEGQLL-SII 190 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~--------------------~~~~I~~~d~~g~~~-~~~ 190 (335)
.+|-++.++.-...... ....+-.|....+..|+.||.+ +.+++..+|...+.. +.+
T Consensus 161 llD~~tf~v~g~We~~~--~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~i 238 (461)
T PF05694_consen 161 LLDGETFEVKGRWEKDR--GPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTI 238 (461)
T ss_dssp EE-TTT--EEEE--SB---TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEE
T ss_pred EEcCccccccceeccCC--CCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEE
Confidence 99998877764433321 1245667999999988888743 367889999775443 333
Q ss_pred cCCccccccccccccccCeEEEc--cCC-eEEEEECCCCEEEEEeCCCCce--eEEEEeccC-----Cc--CC-------
Q 039428 191 RSPLFTAKEWYKNVFGLNGIVYH--PDG-FLIVIHMCSGNLFKIDIRKEEE--EVKLIELRG-----GS--SL------- 251 (335)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~Gia~~--~dg-~Lyvad~~~~~v~~~d~~~~~~--~~~~~~~~g-----~~--~~------- 251 (335)
.-+. ....|--|-+. |+. +=||.-..+.+|+++-.+.+.. ...++.++. .. .+
T Consensus 239 dLg~--------~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~ 310 (461)
T PF05694_consen 239 DLGE--------EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAV 310 (461)
T ss_dssp ES-T--------TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE
T ss_pred ecCC--------CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccC
Confidence 2110 01113333333 333 6677776788888886643311 222333321 10 01
Q ss_pred -CCCCeEEEcCCC-cEEEEecCCCeEEEEEcCC
Q 039428 252 -SLGDGLALLSPT-KLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 252 -~~pdGia~d~~g-~l~va~~~~~~~~v~~~~~ 282 (335)
+.+..|.+..|+ .|||+++..+.+|.++..|
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence 345677777666 5999999889999988765
No 123
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.55 E-value=0.078 Score=55.39 Aligned_cols=197 Identities=12% Similarity=0.043 Sum_probs=112.9
Q ss_pred ceeeeEEcC-CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDD-VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~-~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.-.+++|++ ++++++++..++.|..||...+.. +. .+... .....+.+.+.++.++++.. .. +
T Consensus 577 ~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~----~~---~~~~~----~~v~~v~~~~~~g~~latgs-~d----g 640 (793)
T PLN00181 577 RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS----IG---TIKTK----ANICCVQFPSESGRSLAFGS-AD----H 640 (793)
T ss_pred CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE----EE---EEecC----CCeEEEEEeCCCCCEEEEEe-CC----C
Confidence 356899986 677777778889999999654431 21 22111 13456666544566655422 11 3
Q ss_pred eEEEEECCCCeE-EEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-------EEEEecCCccccccc
Q 039428 129 ALAAYDLSTWKR-LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-------LLSIIRSPLFTAKEW 200 (335)
Q Consensus 129 ~v~~~d~~~~~~-~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-------~~~~~~~~~~~~~~~ 200 (335)
.|..||.+.... ..... . . ......+.+. ++..+++.+..+.|..+|.... ....+ ..
T Consensus 641 ~I~iwD~~~~~~~~~~~~--~--h-~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-----~g--- 706 (793)
T PLN00181 641 KVYYYDLRNPKLPLCTMI--G--H-SKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-----MG--- 706 (793)
T ss_pred eEEEEECCCCCccceEec--C--C-CCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-----cC---
Confidence 599999876542 21111 1 1 2334567775 5667777777888888886521 11111 11
Q ss_pred cccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccC-C--------cCCCCCCeEEEcCCCcEEEEecC
Q 039428 201 YKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRG-G--------SSLSLGDGLALLSPTKLVVAGNP 271 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g-~--------~~~~~pdGia~d~~g~l~va~~~ 271 (335)
.....+.+++++++.++++-+.+++|..++..... ....+.... + ........+++.+++..+++...
T Consensus 707 --h~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~ 783 (793)
T PLN00181 707 --HTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPM-PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANS 783 (793)
T ss_pred --CCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCC-ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecC
Confidence 11235778999999877888889999999876542 111111100 0 00011356677777777677554
Q ss_pred CCeEEEEE
Q 039428 272 YPSARLVE 279 (335)
Q Consensus 272 ~~~~~v~~ 279 (335)
.+.+++++
T Consensus 784 dG~I~i~~ 791 (793)
T PLN00181 784 TGNIKILE 791 (793)
T ss_pred CCcEEEEe
Confidence 45566654
No 124
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=97.55 E-value=0.0018 Score=60.96 Aligned_cols=196 Identities=12% Similarity=0.128 Sum_probs=130.4
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..+.|..+|..|.....+..|--||.++|+ ++. ++. . +..|.-+.+.|++.+++++. ... .+|.
T Consensus 262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~----~~~--~f~-~----~~~~~cvkf~pd~~n~fl~G--~sd---~ki~ 325 (503)
T KOG0282|consen 262 RDASFNNCGTSFLSASFDRFLKLWDTETGQ----VLS--RFH-L----DKVPTCVKFHPDNQNIFLVG--GSD---KKIR 325 (503)
T ss_pred hhhhccccCCeeeeeecceeeeeeccccce----EEE--EEe-c----CCCceeeecCCCCCcEEEEe--cCC---CcEE
Confidence 578999999999888889999999987676 122 122 1 23577888998665777742 222 4699
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEE-EEecCCccccccccccccccCeE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLL-SIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~-~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
.||.++++++..++- .....+++.|=++|+-||+.+....+..++.+-... ..+... ....--.+
T Consensus 326 ~wDiRs~kvvqeYd~-----hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~---------~~hsmP~~ 391 (503)
T KOG0282|consen 326 QWDIRSGKVVQEYDR-----HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADP---------EMHTMPCL 391 (503)
T ss_pred EEeccchHHHHHHHh-----hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcch---------hhccCcce
Confidence 999999986522211 145678899999999999988877777776653322 111111 11223468
Q ss_pred EEccCCeEEEEECCCCEEEEEeCCCCc--eeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIRKEE--EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~~~~--~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
++.|.+..+.+++-.++|+.|.+...- ...+.+. |-..-+++-.+.+.+||...+++...+.+...+
T Consensus 392 ~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe--Gh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 392 TLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE--GHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred ecCCCCCeehhhccCceEEEEecccccccCHhhhhc--ceeccCceeeEEEcCCCCeEEeecCCccEEEee
Confidence 899999999999999999998876530 0112222 101124577889999999888877555555444
No 125
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.024 Score=57.50 Aligned_cols=212 Identities=13% Similarity=0.128 Sum_probs=124.2
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
....|++++|..-...++..+|.|.-||-.=+. .+. ++ .+. .+...||.+++ ++-|||..+|..
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM~t----li~--rF---deH-dGpVRgv~FH~-~qplFVSGGDDy----- 73 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGT----LID--RF---DEH-DGPVRGVDFHP-TQPLFVSGGDDY----- 73 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhhhh----HHh--hh---hcc-CCccceeeecC-CCCeEEecCCcc-----
Confidence 346799999998777777889999999842222 122 12 221 13568999997 788999655432
Q ss_pred eEEEEECCCCeEEEE----------eecC----------C------------------CccCCCCCCceeECCCCcEEEE
Q 039428 129 ALAAYDLSTWKRLFL----------TQLS----------G------------------KSEEKSTADDIAVDAEGNAYVT 170 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~----------~~~~----------~------------------~~~~~~~p~~~~vd~~G~lyV~ 170 (335)
.|.+|+.+..+..+. ..+- . .+. -++..-..|.|.-.+.|+
T Consensus 74 kIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGH-nHYVMcAqFhptEDlIVS 152 (1202)
T KOG0292|consen 74 KIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGH-NHYVMCAQFHPTEDLIVS 152 (1202)
T ss_pred EEEEEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecC-ceEEEeeccCCccceEEE
Confidence 355555544332110 0000 0 000 233344445554456666
Q ss_pred eCCCCeEEEEccCCcEEEEecC--------------Ccccccc------ccccccccCeEEEccCCeEEEEECCCCEEEE
Q 039428 171 DVVSSKIWKVGVEGQLLSIIRS--------------PLFTAKE------WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFK 230 (335)
Q Consensus 171 d~~~~~I~~~d~~g~~~~~~~~--------------~~~~~~~------~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~ 230 (335)
-+...+|.++|-.|-....... ..|..++ ..+...+.|=.+|.|---|+|+-.++++|.-
T Consensus 153 aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKl 232 (1202)
T KOG0292|consen 153 ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKL 232 (1202)
T ss_pred ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeE
Confidence 6667777777765522211000 0121111 1234457888899987789999887776544
Q ss_pred EeCCCCceeEEEEec-cCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 231 IDIRKEEEEVKLIEL-RGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 231 ~d~~~~~~~~~~~~~-~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
...+.. ....++. .| + .+..+++-++|..++++++.....++|.+..
T Consensus 233 Wrmnet--KaWEvDtcrg-H-~nnVssvlfhp~q~lIlSnsEDksirVwDm~ 280 (1202)
T KOG0292|consen 233 WRMNET--KAWEVDTCRG-H-YNNVSSVLFHPHQDLILSNSEDKSIRVWDMT 280 (1202)
T ss_pred EEeccc--cceeehhhhc-c-cCCcceEEecCccceeEecCCCccEEEEecc
Confidence 444443 2222332 23 3 5678999999999999998876788887754
No 126
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=97.54 E-value=0.037 Score=52.34 Aligned_cols=173 Identities=11% Similarity=0.008 Sum_probs=96.8
Q ss_pred CCcceEEEeCCCCeEEEEEecCC-------CCc-cceEEEEECCCCeEEEEeecCC---CccCCCCCCceeECCC-CcEE
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVL-------GNK-YSALAAYDLSTWKRLFLTQLSG---KSEEKSTADDIAVDAE-GNAY 168 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~-------~~~-~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~p~~~~vd~~-G~ly 168 (335)
+.-.-|.++| +|.|||+..+.. ... ...+++++.++.... .-+... -..+.-.|.+++++|. |.+|
T Consensus 177 H~g~~l~f~p-DG~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~-d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw 254 (399)
T COG2133 177 HFGGRLVFGP-DGKLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPA-DNPFPNSEIWSYGHRNPQGLAWHPVTGALW 254 (399)
T ss_pred cCcccEEECC-CCcEEEEeCCCCCcccccCccccccceeeeccCccccc-CCCCCCcceEEeccCCccceeecCCCCcEE
Confidence 4557899998 779999876652 110 134555554432111 000000 0113578899999998 9999
Q ss_pred EEeCCCCeE------EEEccCCcE----EEEecC---C----------cccccc-ccccccccCeEEEccC-------Ce
Q 039428 169 VTDVVSSKI------WKVGVEGQL----LSIIRS---P----------LFTAKE-WYKNVFGLNGIVYHPD-------GF 217 (335)
Q Consensus 169 V~d~~~~~I------~~~d~~g~~----~~~~~~---~----------~~~~~~-~~~~~~~p~Gia~~~d-------g~ 217 (335)
+++-....+ ..+.+ |+. ...++. + ....|. .-.....|-||+|... +.
T Consensus 255 ~~e~g~d~~~~~Deln~i~~-G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~~h~ApsGmaFy~G~~fP~~r~~ 333 (399)
T COG2133 255 TTEHGPDALRGPDELNSIRP-GKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWAPHIAPSGMAFYTGDLFPAYRGD 333 (399)
T ss_pred EEecCCCcccCccccccccc-CCccCCceeccCcccCccccCCCcccccccCCceeeccccccceeEEecCCcCccccCc
Confidence 998665333 22211 111 111110 0 000010 0112245799999953 68
Q ss_pred EEEEECCCCEEEEEeCCCCc-eeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC-CCeEEEE
Q 039428 218 LIVIHMCSGNLFKIDIRKEE-EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP-YPSARLV 278 (335)
Q Consensus 218 Lyvad~~~~~v~~~d~~~~~-~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~-~~~~~v~ 278 (335)
|||+...+-.+.+.+++++. -..+-+ +.++. -..|-++++.+||.|++++.. ++.++.+
T Consensus 334 lfV~~hgsw~~~~~~~~g~~~~~~~~f-l~~d~-~gR~~dV~v~~DGallv~~D~~~g~i~Rv 394 (399)
T COG2133 334 LFVGAHGSWPVLRLRPDGNYKVVLTGF-LSGDL-GGRPRDVAVAPDGALLVLTDQGDGRILRV 394 (399)
T ss_pred EEEEeecceeEEEeccCCCcceEEEEE-EecCC-CCcccceEECCCCeEEEeecCCCCeEEEe
Confidence 99999888889998888762 111111 11111 156999999999999999553 2344443
No 127
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0031 Score=53.55 Aligned_cols=162 Identities=17% Similarity=0.187 Sum_probs=89.5
Q ss_pred CcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 48 SFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
..+.||+.-. |+.+|.- ..++.-+++|+. .- ++....+.++ .-.|++.| +.+|+. +|..
T Consensus 90 ~~FgEGit~~--gd~~y~LTw~egvaf~~d~~-t~------~~lg~~~y~G----eGWgLt~d--~~~Lim--sdGs--- 149 (262)
T COG3823 90 TVFGEGITKL--GDYFYQLTWKEGVAFKYDAD-TL------EELGRFSYEG----EGWGLTSD--DKNLIM--SDGS--- 149 (262)
T ss_pred cccccceeec--cceEEEEEeccceeEEEChH-Hh------hhhcccccCC----cceeeecC--CcceEe--eCCc---
Confidence 3455666654 3344444 445666777642 21 1100111222 23578776 566887 4432
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCcccccc--cccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKE--WYKN 203 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~--~~~~ 203 (335)
+.+..-||++-.....+.....+.+....|.+.. =||.+|..=+.+.+|.|++|+. +....++-..+.... ....
T Consensus 150 -atL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~ 227 (262)
T COG3823 150 -ATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSN 227 (262)
T ss_pred -eEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccc
Confidence 4577778876543322222222333566777765 4799999888999999999984 444433321111100 0111
Q ss_pred ccccCeEEEccCC-eEEEEECCCCEEEEE
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCSGNLFKI 231 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~~~v~~~ 231 (335)
..-+||||++|++ ++|++--.=-.++.+
T Consensus 228 ~nvlNGIA~~~~~~r~~iTGK~wp~lfEV 256 (262)
T COG3823 228 DNVLNGIAHDPQQDRFLITGKLWPLLFEV 256 (262)
T ss_pred cccccceeecCcCCeEEEecCcCceeEEE
Confidence 2348999999988 999885433344433
No 128
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=97.52 E-value=0.01 Score=57.55 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=42.3
Q ss_pred CCCCCeEEEcCCCcEEEEecCCC--------eEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe--CCeEEEEec
Q 039428 251 LSLGDGLALLSPTKLVVAGNPYP--------SARLVESSDGWETASVVAKFNGPTHRVATAATVK--DGRVYLSHL 316 (335)
Q Consensus 251 ~~~pdGia~d~~g~l~va~~~~~--------~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~~~ 316 (335)
|..||+|++|+.|+||++..+++ ++.-+.. .+.++.++...+..|...--|+.+|. +.++||+-+
T Consensus 499 f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~-~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~vQ 573 (616)
T COG3211 499 FNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLT-PDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNVQ 573 (616)
T ss_pred ccCCCceEECCCCCEEEEecCCCCccCccccccccccc-CCCccceeeeeccCCCcceeecceeCCCCceEEEEec
Confidence 67799999999999999943322 1221211 23345566566667765555788884 678999543
No 129
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.45 E-value=0.01 Score=58.99 Aligned_cols=193 Identities=17% Similarity=0.153 Sum_probs=121.9
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
-|..+.|+.+.++.+..+.++.-|.. +... . .+...+.. .....+.|.| .|..|++ + +.++..++|
T Consensus 455 yg~sFsPd~rfLlScSED~svRLWsl-~t~s-----~---~V~y~GH~-~PVwdV~F~P-~GyYFat-a--s~D~tArLW 520 (707)
T KOG0263|consen 455 YGCSFSPDRRFLLSCSEDSSVRLWSL-DTWS-----C---LVIYKGHL-APVWDVQFAP-RGYYFAT-A--SHDQTARLW 520 (707)
T ss_pred eeeeecccccceeeccCCcceeeeec-ccce-----e---EEEecCCC-cceeeEEecC-CceEEEe-c--CCCceeeee
Confidence 58889999877766676777777764 2321 1 11122211 1235677887 6766663 3 334445666
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
..|..--..++..+ .+-..-+.|.|+.+...+.+...+|..+|.- |..++++.. ...-...+
T Consensus 521 s~d~~~PlRifagh-------lsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G----------H~~~V~al 583 (707)
T KOG0263|consen 521 STDHNKPLRIFAGH-------LSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG----------HKGPVTAL 583 (707)
T ss_pred ecccCCchhhhccc-------ccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC----------CCCceEEE
Confidence 66642111122222 2333448899999888888888888888864 666665421 11226899
Q ss_pred EEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
+++|+|+-.++-...+.|...|+.++. .+..+ .+ + -+..+-+.+..+|++.+++.+.+++++.+.
T Consensus 584 ~~Sp~Gr~LaSg~ed~~I~iWDl~~~~-~v~~l--~~-H-t~ti~SlsFS~dg~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 584 AFSPCGRYLASGDEDGLIKIWDLANGS-LVKQL--KG-H-TGTIYSLSFSRDGNVLASGGADNSVRLWDL 648 (707)
T ss_pred EEcCCCceEeecccCCcEEEEEcCCCc-chhhh--hc-c-cCceeEEEEecCCCEEEecCCCCeEEEEEc
Confidence 999999777777788899999998863 22212 12 1 134678999999999999877788888764
No 130
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.40 E-value=0.055 Score=50.68 Aligned_cols=189 Identities=10% Similarity=0.097 Sum_probs=113.1
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
.++..++.|..++....++....-|..++. .+. ..+.. ..+-.-+..+++| +|.|+.+. ... +.|.
T Consensus 307 ~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~----~lt---~vs~~-~s~v~~ts~~fHp-DgLifgtg--t~d---~~vk 372 (506)
T KOG0289|consen 307 TGLSLHPTGEYLLSASNDGTWAFSDISSGS----QLT---VVSDE-TSDVEYTSAAFHP-DGLIFGTG--TPD---GVVK 372 (506)
T ss_pred eeeeeccCCcEEEEecCCceEEEEEccCCc----EEE---EEeec-cccceeEEeeEcC-CceEEecc--CCC---ceEE
Confidence 577888888866665666666666644443 111 22221 1112356788997 89999852 222 4588
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIV 211 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia 211 (335)
.||++++... ..+++. -.....++|..+|...++....+.|..+|..--. .+ +.|..+ .+...+.+.
T Consensus 373 iwdlks~~~~--a~Fpgh---t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~--n~--kt~~l~----~~~~v~s~~ 439 (506)
T KOG0289|consen 373 IWDLKSQTNV--AKFPGH---TGPVKAISFSENGYWLATAADDGSVKLWDLRKLK--NF--KTIQLD----EKKEVNSLS 439 (506)
T ss_pred EEEcCCcccc--ccCCCC---CCceeEEEeccCceEEEEEecCCeEEEEEehhhc--cc--ceeecc----ccccceeEE
Confidence 9999877543 334321 2344679999999888887888889999875211 11 122221 234589999
Q ss_pred EccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 212 YHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 212 ~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
||+.|...+.-..+=+||.++-... ..+.+...... .+..+|+.+.....+..+..
T Consensus 440 fD~SGt~L~~~g~~l~Vy~~~k~~k--~W~~~~~~~~~-sg~st~v~Fg~~aq~l~s~s 495 (506)
T KOG0289|consen 440 FDQSGTYLGIAGSDLQVYICKKKTK--SWTEIKELADH-SGLSTGVRFGEHAQYLASTS 495 (506)
T ss_pred EcCCCCeEEeecceeEEEEEecccc--cceeeehhhhc-ccccceeeecccceEEeecc
Confidence 9999944444455567888876554 44444322212 23468888876555444433
No 131
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=97.39 E-value=0.021 Score=53.08 Aligned_cols=114 Identities=16% Similarity=0.236 Sum_probs=67.6
Q ss_pred CCCCCceeECCC-CcEEE-EeCCC----CeEEEEccCC-----cEEEEecCCcccccc---ccccccccCeEEEccCCeE
Q 039428 153 KSTADDIAVDAE-GNAYV-TDVVS----SKIWKVGVEG-----QLLSIIRSPLFTAKE---WYKNVFGLNGIVYHPDGFL 218 (335)
Q Consensus 153 ~~~p~~~~vd~~-G~lyV-~d~~~----~~I~~~d~~g-----~~~~~~~~~~~~~~~---~~~~~~~p~Gia~~~dg~L 218 (335)
+....+++.+++ |++|+ +|... .+++.++.+. ......+...+..+. ......-+.||++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 667788999954 54333 34332 2366665443 111111111111111 0112235889999888999
Q ss_pred EEEECCC------CEEEEEeCCCCceeEEEEeccCC-----------cCCCCCCeEEEcCCCc-EEEE
Q 039428 219 IVIHMCS------GNLFKIDIRKEEEEVKLIELRGG-----------SSLSLGDGLALLSPTK-LVVA 268 (335)
Q Consensus 219 yvad~~~------~~v~~~d~~~~~~~~~~~~~~g~-----------~~~~~pdGia~d~~g~-l~va 268 (335)
||++... .+|++++.++. ..+.+.++.. ..-.+..||++.++|+ ||++
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~G~--~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLDGR--VIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCCCc--ccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 9999999 99999999865 3333322210 1124679999999997 8888
No 132
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=97.38 E-value=0.0065 Score=57.82 Aligned_cols=203 Identities=13% Similarity=0.173 Sum_probs=121.6
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCC-------cCCC--CcceEEEeCCCCeEEEE
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDD-------VVGN--ATMGIAVDRPRNRLLVA 118 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~-------~~~~--~p~Gi~~d~~~g~l~v~ 118 (335)
...-.++.|++.|+.+++-..+.+.-.+| .+|. ++++ +..... ..|+ ..+.-.++|.+...|.+
T Consensus 214 ~h~i~sl~ys~Tg~~iLvvsg~aqakl~D-RdG~---~~~e---~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT 286 (641)
T KOG0772|consen 214 THQINSLQYSVTGDQILVVSGSAQAKLLD-RDGF---EIVE---FSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLT 286 (641)
T ss_pred ccccceeeecCCCCeEEEEecCcceeEEc-cCCc---eeee---eeccchhhhhhhccCCceeeeeccccccCcccceEE
Confidence 33457889999999888876677777777 3554 1122 321111 0111 12444567766667765
Q ss_pred EecCCCCccceEEEEECCCC--eEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccc
Q 039428 119 FTDVLGNKYSALAAYDLSTW--KRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFT 196 (335)
Q Consensus 119 ~~D~~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~ 196 (335)
+++. +.+..||.... ++....+. ..+..--.|.-.++++||+++.+....|.|..++..+..+. +.+.
T Consensus 287 ~s~D-----gtlRiWdv~~~k~q~qVik~k-~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~----p~~~ 356 (641)
T KOG0772|consen 287 CSYD-----GTLRIWDVNNTKSQLQVIKTK-PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR----PVMK 356 (641)
T ss_pred ecCC-----CcEEEEecCCchhheeEEeec-cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc----cceE
Confidence 4432 35778887532 22211221 11111355677889999999888888999999997554433 2222
Q ss_pred cccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEE-eccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 197 AKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLI-ELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 197 ~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~-~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
-......+.....|+|++||+.+.+-...+.+...|++..+..+.+. .+.. .+. -..++|.|+..|++++.
T Consensus 357 vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t--~~~-~tdc~FSPd~kli~TGt 428 (641)
T KOG0772|consen 357 VKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPT--PFP-GTDCCFSPDDKLILTGT 428 (641)
T ss_pred eeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCc--cCC-CCccccCCCceEEEecc
Confidence 11111123357899999999888888889999888988753122222 1211 122 24688899999999954
No 133
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=0.033 Score=49.69 Aligned_cols=153 Identities=13% Similarity=0.084 Sum_probs=84.0
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEe----CCCCe
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTD----VVSSK 176 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d----~~~~~ 176 (335)
+.+||+++|...+-.+. +...+ ..-++||+.+.+......- ... -.+--.-.+.+||+ +|.|+ ...|.
T Consensus 69 R~Hgi~~~p~~~ravaf-ARrPG---tf~~vfD~~~~~~pv~~~s--~~~-RHfyGHGvfs~dG~~LYATEndfd~~rGV 141 (366)
T COG3490 69 RGHGIAFHPALPRAVAF-ARRPG---TFAMVFDPNGAQEPVTLVS--QEG-RHFYGHGVFSPDGRLLYATENDFDPNRGV 141 (366)
T ss_pred ccCCeecCCCCcceEEE-EecCC---ceEEEECCCCCcCcEEEec--ccC-ceeecccccCCCCcEEEeecCCCCCCCce
Confidence 55788888755544332 32222 3477889987754422221 111 34444577899997 77764 34677
Q ss_pred EEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECC--CC---------------EEEEEeCCCCce
Q 039428 177 IWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC--SG---------------NLFKIDIRKEEE 238 (335)
Q Consensus 177 I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~--~~---------------~v~~~d~~~~~~ 238 (335)
|-++|.+-++.++ ..|. .-+.+|+-+.+.+|| .|.+++.+ .+ ++.-+|...+.
T Consensus 142 iGvYd~r~~fqrv---gE~~-----t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~- 212 (366)
T COG3490 142 IGVYDAREGFQRV---GEFS-----THGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGN- 212 (366)
T ss_pred EEEEeccccccee---cccc-----cCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccc-
Confidence 7777776555442 2232 245789999999999 55566542 11 22222311110
Q ss_pred eEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 239 EVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 239 ~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.++...++.+.......-+++++||++|..+.
T Consensus 213 liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 213 LIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred hhhhccCchhhhhcceeeeeeCCCCcEEEEEE
Confidence 11111111100012357899999999999954
No 134
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.36 E-value=0.028 Score=53.20 Aligned_cols=120 Identities=11% Similarity=0.190 Sum_probs=76.5
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
.|-+||.++++...... +++....+.++++|...|....+..||++|.+....+.+...... -..
T Consensus 383 ~l~iyd~~~~e~kr~e~------~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~---------lIt 447 (668)
T COG4946 383 KLGIYDKDGGEVKRIEK------DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYG---------LIT 447 (668)
T ss_pred eEEEEecCCceEEEeeC------CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccc---------eeE
Confidence 59999999988663221 156667799999998555556788999999886666655432221 256
Q ss_pred eEEEccCC-eEEEEECC---CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEe
Q 039428 209 GIVYHPDG-FLIVIHMC---SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAG 269 (335)
Q Consensus 209 Gia~~~dg-~Lyvad~~---~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~ 269 (335)
+++++|++ ++-++-.. ...|..+|..++ ....+..+. +.-..-|+|++|+ ||.-.
T Consensus 448 df~~~~nsr~iAYafP~gy~tq~Iklydm~~~--Kiy~vTT~t----a~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 448 DFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG--KIYDVTTPT----AYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEEEcCCceeEEEecCcceeeeeEEEEecCCC--eEEEecCCc----ccccCcccCCCCcEEEEEe
Confidence 78888877 44333322 345777888887 333333222 2233468899985 55553
No 135
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=97.36 E-value=0.036 Score=49.58 Aligned_cols=196 Identities=16% Similarity=0.118 Sum_probs=124.5
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-..+.++|+|..|..+..+..|+-|.. .+.. + ..+. ..+.. +...++...+++..|+-+..|. .
T Consensus 49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv-~gdc-----e-N~~~-lkgHs-gAVM~l~~~~d~s~i~S~gtDk------~ 113 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSDRAIVLWNV-YGDC-----E-NFWV-LKGHS-GAVMELHGMRDGSHILSCGTDK------T 113 (338)
T ss_pred eEEEEEECCCCCeEeecCCcceEEEEec-cccc-----c-ceee-ecccc-ceeEeeeeccCCCEEEEecCCc------e
Confidence 3467899999988777777889998873 3431 1 1121 12211 3467888876556666654443 6
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
|+.||.++|+....-.. . -...|-+...+.|- +..+.+..+++..+|...+... ..+. ......
T Consensus 114 v~~wD~~tG~~~rk~k~----h-~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~----~t~~------~kyqlt 178 (338)
T KOG0265|consen 114 VRGWDAETGKRIRKHKG----H-TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI----KTFE------NKYQLT 178 (338)
T ss_pred EEEEecccceeeehhcc----c-cceeeecCccccCCeEEEecCCCceEEEEeecccchh----hccc------cceeEE
Confidence 99999999977633221 1 34555566555574 5556677888888887654322 1221 123467
Q ss_pred eEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 209 GIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 209 Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.++|..++ +++ +-.-++.|...|+..+. ...... |.. ....||.+.++|....++.+++.+++.+..
T Consensus 179 Av~f~d~s~qv~-sggIdn~ikvWd~r~~d-~~~~ls--Gh~--DtIt~lsls~~gs~llsnsMd~tvrvwd~r 246 (338)
T KOG0265|consen 179 AVGFKDTSDQVI-SGGIDNDIKVWDLRKND-GLYTLS--GHA--DTITGLSLSRYGSFLLSNSMDNTVRVWDVR 246 (338)
T ss_pred EEEeccccccee-eccccCceeeeccccCc-ceEEee--ccc--CceeeEEeccCCCccccccccceEEEEEec
Confidence 78888777 444 44456778888887652 333333 422 336899999999988998888888887754
No 136
>PTZ00421 coronin; Provisional
Probab=97.36 E-value=0.16 Score=49.86 Aligned_cols=180 Identities=11% Similarity=0.056 Sum_probs=101.0
Q ss_pred ceeeeEEcCCC-CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVG-RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g-~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
....++|+|++ ++++++..++.|..||..++.. +. .+.... .....+++++ ++.++++... + .
T Consensus 127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~----~~---~l~~h~---~~V~sla~sp-dG~lLatgs~---D--g 190 (493)
T PTZ00421 127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKA----VE---VIKCHS---DQITSLEWNL-DGSLLCTTSK---D--K 190 (493)
T ss_pred cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeE----EE---EEcCCC---CceEEEEEEC-CCCEEEEecC---C--C
Confidence 35678999986 5666667899999999654431 11 221111 2467899997 6666654221 1 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEe----CCCCeEEEEccCCc--EEEEecCCccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTD----VVSSKIWKVGVEGQ--LLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d----~~~~~I~~~d~~g~--~~~~~~~~~~~~~~~~~ 202 (335)
.|..||+++++....... .. ......+.+.++++.+++- +..+.|..+|.... ...... ..
T Consensus 191 ~IrIwD~rsg~~v~tl~~--H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~---~d------ 257 (493)
T PTZ00421 191 KLNIIDPRDGTIVSSVEA--HA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVD---LD------ 257 (493)
T ss_pred EEEEEECCCCcEEEEEec--CC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEec---cC------
Confidence 699999998876533221 10 1222345566665555542 23567888887531 111110 00
Q ss_pred cccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC
Q 039428 203 NVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP 262 (335)
Q Consensus 203 ~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~ 262 (335)
......-..+++|+ .||++..+.+.|..+|+..++ ......... -..-.|+++.+.
T Consensus 258 ~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~-~~~~~~~~s---~~~~~g~~~~pk 314 (493)
T PTZ00421 258 QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNER-LTFCSSYSS---VEPHKGLCMMPK 314 (493)
T ss_pred CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCc-eEEEeeccC---CCCCcceEeccc
Confidence 01112334678888 566666678889999998763 222222211 111367777765
No 137
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=97.34 E-value=0.062 Score=50.49 Aligned_cols=145 Identities=20% Similarity=0.276 Sum_probs=76.7
Q ss_pred CcceEEEe--CCCCeEEEEEecCCCCccceEEEE-ECCCCeEE--EEeecCCCccCCCCCCceeECCC-CcEEEEeCCCC
Q 039428 102 ATMGIAVD--RPRNRLLVAFTDVLGNKYSALAAY-DLSTWKRL--FLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSS 175 (335)
Q Consensus 102 ~p~Gi~~d--~~~g~l~v~~~D~~~~~~~~v~~~-d~~~~~~~--~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~ 175 (335)
.+.|+++- +.+|.+|+...+..+. -.-+++ +...+.+. ....+.. ...+.++++|.. |.+|+++.. .
T Consensus 157 e~yGlcly~~~~~g~~ya~v~~k~G~--~~Qy~L~~~~~g~v~~~lVR~f~~----~sQ~EGCVVDDe~g~LYvgEE~-~ 229 (381)
T PF02333_consen 157 EPYGLCLYRSPSTGALYAFVNGKDGR--VEQYELTDDGDGKVSATLVREFKV----GSQPEGCVVDDETGRLYVGEED-V 229 (381)
T ss_dssp SEEEEEEEE-TTT--EEEEEEETTSE--EEEEEEEE-TTSSEEEEEEEEEE-----SS-EEEEEEETTTTEEEEEETT-T
T ss_pred cceeeEEeecCCCCcEEEEEecCCce--EEEEEEEeCCCCcEeeEEEEEecC----CCcceEEEEecccCCEEEecCc-c
Confidence 47889874 4467888876554332 112222 22334322 1222211 346889999986 899999876 5
Q ss_pred eEEEEccC---CcEEEEe---cCCccccccccccccccCeEEEcc--C--CeEEEEECCCCEEEEEeCCCCceeEEEEec
Q 039428 176 KIWKVGVE---GQLLSII---RSPLFTAKEWYKNVFGLNGIVYHP--D--GFLIVIHMCSGNLFKIDIRKEEEEVKLIEL 245 (335)
Q Consensus 176 ~I~~~d~~---g~~~~~~---~~~~~~~~~~~~~~~~p~Gia~~~--d--g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~ 245 (335)
.||+++.+ +...+.+ ....+. .-..||++-. + |+|++++.++++..+++..+....+..|.+
T Consensus 230 GIW~y~Aep~~~~~~~~v~~~~g~~l~--------aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~i 301 (381)
T PF02333_consen 230 GIWRYDAEPEGGNDRTLVASADGDGLV--------ADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFRI 301 (381)
T ss_dssp EEEEEESSCCC-S--EEEEEBSSSSB---------S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEEE
T ss_pred EEEEEecCCCCCCcceeeecccccccc--------cCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEEe
Confidence 79999976 2222222 111222 2378999853 3 489999999999999998874213344433
Q ss_pred cCCc---CCCCCCeEEEcC
Q 039428 246 RGGS---SLSLGDGLALLS 261 (335)
Q Consensus 246 ~g~~---~~~~pdGia~d~ 261 (335)
.... .....||+++.+
T Consensus 302 ~~~~~idg~~eTDG~~v~s 320 (381)
T PF02333_consen 302 GDGGGIDGVSETDGIEVVS 320 (381)
T ss_dssp E--SSS----S---EEEE-
T ss_pred ccCCCccccccCCcceEEc
Confidence 2100 123467777754
No 138
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.33 E-value=0.07 Score=52.44 Aligned_cols=128 Identities=11% Similarity=-0.006 Sum_probs=71.8
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEe-----------------CCCCeEEEEccC-CcEEEE
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTD-----------------VVSSKIWKVGVE-GQLLSI 189 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d-----------------~~~~~I~~~d~~-g~~~~~ 189 (335)
+.++.+|+++|++++..+.. -.+++.++ +.+|+.. ...+.|+.+|.. |+.+..
T Consensus 311 G~l~ald~~tG~~~W~~~~~--------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~ 381 (488)
T cd00216 311 GFFYVLDRTTGKLISARPEV--------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWE 381 (488)
T ss_pred ceEEEEECCCCcEeeEeEee--------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeE
Confidence 35999999999998765432 11245555 6777742 235789999975 444331
Q ss_pred ecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEe
Q 039428 190 IRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAG 269 (335)
Q Consensus 190 ~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~ 269 (335)
............+.......+++. ++.||+.+ .+++|+.+|.++++ .+...++.+ .....| +++..+|++||+.
T Consensus 382 ~~~~~~~~~~~~g~~~~~~~~~~~-g~~v~~g~-~dG~l~ald~~tG~-~lW~~~~~~-~~~a~P--~~~~~~g~~yv~~ 455 (488)
T cd00216 382 KREGTIRDSWNIGFPHWGGSLATA-GNLVFAGA-ADGYFRAFDATTGK-ELWKFRTPS-GIQATP--MTYEVNGKQYVGV 455 (488)
T ss_pred eeCCccccccccCCcccCcceEec-CCeEEEEC-CCCeEEEEECCCCc-eeeEEECCC-CceEcC--EEEEeCCEEEEEE
Confidence 111000000000000001123333 56888877 68899999998875 444455533 212334 5556678999994
Q ss_pred c
Q 039428 270 N 270 (335)
Q Consensus 270 ~ 270 (335)
.
T Consensus 456 ~ 456 (488)
T cd00216 456 M 456 (488)
T ss_pred E
Confidence 4
No 139
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.31 E-value=0.12 Score=46.66 Aligned_cols=157 Identities=16% Similarity=0.181 Sum_probs=99.9
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE-ecCCCCccceE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF-TDVLGNKYSAL 130 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~-~D~~~~~~~~v 130 (335)
.+++|+++|+.++++..+..|..||...|. .+.+ +.++. ...+..++|++.+..|+. .+.. ..+
T Consensus 69 ~sl~WS~dgr~LltsS~D~si~lwDl~~gs----~l~r---irf~s----pv~~~q~hp~k~n~~va~~~~~s----p~v 133 (405)
T KOG1273|consen 69 TSLCWSRDGRKLLTSSRDWSIKLWDLLKGS----PLKR---IRFDS----PVWGAQWHPRKRNKCVATIMEES----PVV 133 (405)
T ss_pred eEEEecCCCCEeeeecCCceeEEEeccCCC----ceeE---EEccC----ccceeeeccccCCeEEEEEecCC----cEE
Confidence 799999999999999889999999976665 1332 23332 235777777666666643 2221 235
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeE
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
..++.....++ +...+++-...+.-..+|+.|+..++....|.+.+++.+..... .+|... .......|
T Consensus 134 i~~s~~~h~~L---p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~v----as~rit----s~~~IK~I 202 (405)
T KOG1273|consen 134 IDFSDPKHSVL---PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECV----ASFRIT----SVQAIKQI 202 (405)
T ss_pred EEecCCceeec---cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheee----eeeeec----hheeeeEE
Confidence 55543211121 12222221233444678999998888889999999998865433 122210 11236678
Q ss_pred EEccCCeEEEEECCCCEEEEEeCC
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIR 234 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~ 234 (335)
-++..|.-++.++..+.|..++..
T Consensus 203 ~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 203 IVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred EEeccCcEEEEecCCceEEEEehh
Confidence 889889777888888888777765
No 140
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=97.28 E-value=0.14 Score=46.96 Aligned_cols=208 Identities=18% Similarity=0.141 Sum_probs=113.6
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-+=+.|+|.+++++....+|.|+.|..+.+. .. ++.+.+.. ..+-=.+-|++.++.....| +.|
T Consensus 151 ieWl~WHp~a~illAG~~DGsvWmw~ip~~~-----~~--kv~~Gh~~---~ct~G~f~pdGKr~~tgy~d------gti 214 (399)
T KOG0296|consen 151 IEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-----LC--KVMSGHNS---PCTCGEFIPDGKRILTGYDD------GTI 214 (399)
T ss_pred eEEEEecccccEEEeecCCCcEEEEECCCcc-----ee--eEecCCCC---CcccccccCCCceEEEEecC------ceE
Confidence 3556889999999988889999999876543 12 24433321 22233445556677664332 469
Q ss_pred EEEECCCCeEEEEeecC----CCccCCCCCCc--eeECCCCcEEEEeCCCCeEEEEccCCcEEEE------------ecC
Q 039428 131 AAYDLSTWKRLFLTQLS----GKSEEKSTADD--IAVDAEGNAYVTDVVSSKIWKVGVEGQLLSI------------IRS 192 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~----~~~~~~~~p~~--~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~------------~~~ 192 (335)
.+||+.+++.+...... .+.-..+.-.- ++...+|.+++.....++|...+........ +..
T Consensus 215 ~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ 294 (399)
T KOG0296|consen 215 IVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPS 294 (399)
T ss_pred EEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhccc
Confidence 99999999887554411 11111122112 2333567888887777777766553111000 000
Q ss_pred ----Cccccc---c-----------ccccc---cccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCC
Q 039428 193 ----PLFTAK---E-----------WYKNV---FGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSL 251 (335)
Q Consensus 193 ----~~~~~~---~-----------~~~~~---~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~ 251 (335)
+.++-. + ..... .+..-+.|.++.+|| +-+.++.|+.+|...++ .+... .| +.
T Consensus 295 ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~-t~c~~g~v~~wDaRtG~-l~~~y--~G-H~- 368 (399)
T KOG0296|consen 295 SSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLL-TACANGKVRQWDARTGQ-LKFTY--TG-HQ- 368 (399)
T ss_pred ccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchhe-eeccCceEEeeeccccc-eEEEE--ec-Cc-
Confidence 000000 0 00000 113334555433444 45578889999988873 22233 24 31
Q ss_pred CCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 252 SLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 252 ~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
.....+++.+++++.|+-...+..+|+..
T Consensus 369 ~~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 369 MGILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred hheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 23567888898888888665566666654
No 141
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=97.27 E-value=0.12 Score=45.69 Aligned_cols=197 Identities=12% Similarity=0.035 Sum_probs=120.7
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-+++.+|.+...+++...+.++.-||.++|+ .+. .+ ..+ .....+.++. .|++.++..|..-.....
T Consensus 54 avW~~Did~~s~~liTGSAD~t~kLWDv~tGk----~la--~~-k~~----~~Vk~~~F~~-~gn~~l~~tD~~mg~~~~ 121 (327)
T KOG0643|consen 54 AVWCCDIDWDSKHLITGSADQTAKLWDVETGK----QLA--TW-KTN----SPVKRVDFSF-GGNLILASTDKQMGYTCF 121 (327)
T ss_pred eEEEEEecCCcceeeeccccceeEEEEcCCCc----EEE--Ee-ecC----CeeEEEeecc-CCcEEEEEehhhcCcceE
Confidence 45778888888887777778888888877776 121 12 122 2456888886 676666656644222257
Q ss_pred EEEEECC-------CCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccc
Q 039428 130 LAAYDLS-------TWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 130 v~~~d~~-------~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~ 202 (335)
|..||.+ +.+....+.- + ...++-+.-++-|...|+.-..|.|.++|....... ..+....
T Consensus 122 v~~fdi~~~~~~~~s~ep~~kI~t--~---~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~-v~s~~~h------ 189 (327)
T KOG0643|consen 122 VSVFDIRDDSSDIDSEEPYLKIPT--P---DSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL-VDSDEEH------ 189 (327)
T ss_pred EEEEEccCChhhhcccCceEEecC--C---ccceeeeeecccCCEEEEecCCCcEEEEEcccCcee-eechhhh------
Confidence 8888876 2232222221 1 245666777888888888888999999998743221 1111111
Q ss_pred cccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEE
Q 039428 203 NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARL 277 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v 277 (335)
....|.|.+++|...|++.+...+-..+|...-. ....+... .+ .+-.++.|-..-.|...+-+..-|
T Consensus 190 -~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~-v~Kty~te--~P---vN~aaisP~~d~VilgGGqeA~dV 257 (327)
T KOG0643|consen 190 -SSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLE-VLKTYTTE--RP---VNTAAISPLLDHVILGGGQEAMDV 257 (327)
T ss_pred -ccccccccccCCcceEEecccCccceeeecccee-eEEEeeec--cc---ccceecccccceEEecCCceeeee
Confidence 1258999999999999999888877778877642 22333221 21 245666666554555443233333
No 142
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.21 E-value=0.13 Score=46.54 Aligned_cols=212 Identities=13% Similarity=0.056 Sum_probs=118.2
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEE--CC-CCCCCcceeeeeEEeecCC--cCC-CCcceEEEeCCCCeEEEEEecC
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVL--VP-DEYSPGTVLEEVKLVKEDD--VVG-NATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d--~~-~g~~~~~v~~~~~~~~~~~--~~~-~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
.|.-+++.||-.-+++. ...++|+++- .. +|.++. .++.... +.. ....-|.+.-.++..|+.++..
T Consensus 134 hpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~------~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~ 207 (420)
T KOG2096|consen 134 HPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSH------HFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASL 207 (420)
T ss_pred CceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCc------ccccccccccchhcccceEEEeecCCceEEEEecC
Confidence 58899999998888888 4456665553 11 122210 1111110 000 1111122222356677754432
Q ss_pred CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc----cCCcEEEEecCCccccc
Q 039428 123 LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG----VEGQLLSIIRSPLFTAK 198 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d----~~g~~~~~~~~~~~~~~ 198 (335)
. ..|..|+++ |+++..++.+ ...-.+.++.|+|++..+...+.-|.++. .+|.+.++-. .|.-
T Consensus 208 d----t~i~lw~lk-Gq~L~~idtn-----q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~r--vf~L- 274 (420)
T KOG2096|consen 208 D----TKICLWDLK-GQLLQSIDTN-----QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKR--VFSL- 274 (420)
T ss_pred C----CcEEEEecC-Cceeeeeccc-----cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhh--hhee-
Confidence 2 359999998 6666555442 23445799999999888777766666544 4665543211 1211
Q ss_pred cccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCC----c--eeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCC
Q 039428 199 EWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE----E--EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPY 272 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~----~--~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~ 272 (335)
.+........||+++..-.++-+.+|++..+|.+=. + ..++....+-...-..|--+++.|+|.++.+..+
T Consensus 275 --kGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g- 351 (420)
T KOG2096|consen 275 --KGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG- 351 (420)
T ss_pred --ccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-
Confidence 112334778899988866677777887766666532 1 0111111100000145778999999987777664
Q ss_pred CeEEEEEcCCC
Q 039428 273 PSARLVESSDG 283 (335)
Q Consensus 273 ~~~~v~~~~~~ 283 (335)
..+.++...++
T Consensus 352 s~l~~~~se~g 362 (420)
T KOG2096|consen 352 SDLKVFASEDG 362 (420)
T ss_pred CceEEEEcccC
Confidence 34777877654
No 143
>PLN02153 epithiospecifier protein
Probab=97.20 E-value=0.19 Score=46.85 Aligned_cols=166 Identities=16% Similarity=0.116 Sum_probs=79.6
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC-----------CeEEEE
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS-----------SKIWKV 180 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~-----------~~I~~~ 180 (335)
++.||+...-......+.+.+||+++.+-...........+..+-...++--++.+||..... ..|+++
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~y 164 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAY 164 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEE
Confidence 688999632111111246999999887544222221100001111222233457899964321 357888
Q ss_pred ccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEEC-------------CCCEEEEEeCCCCceeEEEEeccC
Q 039428 181 GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHM-------------CSGNLFKIDIRKEEEEVKLIELRG 247 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~-------------~~~~v~~~d~~~~~~~~~~~~~~g 247 (335)
|++...-..+.. .. ..+....-.+++.. ++.||+.-. ..+.|+++|+... ....+...+
T Consensus 165 d~~~~~W~~l~~--~~---~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~--~W~~~~~~g 236 (341)
T PLN02153 165 NIADGKWVQLPD--PG---ENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASG--KWTEVETTG 236 (341)
T ss_pred ECCCCeEeeCCC--CC---CCCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEcCCC--cEEeccccC
Confidence 887544322211 00 00011112344443 678887421 1357999999887 455443222
Q ss_pred CcCCCCC-CeEEEcCCCcEEEEecC--------------CCeEEEEEcCCC-cEE
Q 039428 248 GSSLSLG-DGLALLSPTKLVVAGNP--------------YPSARLVESSDG-WET 286 (335)
Q Consensus 248 ~~~~~~p-dGia~d~~g~l~va~~~--------------~~~~~v~~~~~~-~~~ 286 (335)
..+.... .++++ -++.|||.+.. .+.+.+++...+ |+.
T Consensus 237 ~~P~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~ 290 (341)
T PLN02153 237 AKPSARSVFAHAV-VGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEK 290 (341)
T ss_pred CCCCCcceeeeEE-ECCEEEEECcccCCccccccccccccccEEEEEcCccEEEe
Confidence 1101111 22333 34789998442 135666766544 653
No 144
>PTZ00420 coronin; Provisional
Probab=97.18 E-value=0.21 Score=49.85 Aligned_cols=180 Identities=11% Similarity=0.036 Sum_probs=100.0
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
...+++|+|++..++++ ..++.|..||..++.. .. .+..+ .....+.+++ +|.++++.... .
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~----~~---~i~~~----~~V~Slswsp-dG~lLat~s~D-----~ 189 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKR----AF---QINMP----KKLSSLKWNI-KGNLLSGTCVG-----K 189 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcE----EE---EEecC----CcEEEEEECC-CCCEEEEEecC-----C
Confidence 45789999998766555 7789999999654431 11 11122 2467899997 67777753311 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCC-C-CCCceeECCCCcEEEEeCCC----CeEEEEccC--CcEEEEecCCccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEK-S-TADDIAVDAEGNAYVTDVVS----SKIWKVGVE--GQLLSIIRSPLFTAKEW 200 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~-~-~p~~~~vd~~G~lyV~d~~~----~~I~~~d~~--g~~~~~~~~~~~~~~~~ 200 (335)
.|..||+++++....... ..... . ..+-..+.+++..+++-... ..|..+|.. ++.+.... ..
T Consensus 190 ~IrIwD~Rsg~~i~tl~g--H~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~---ld---- 260 (568)
T PTZ00420 190 HMHIIDPRKQEIASSFHI--HDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS---ID---- 260 (568)
T ss_pred EEEEEECCCCcEEEEEec--ccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE---ec----
Confidence 599999998876533221 10000 0 00111234676666653332 368888866 23322111 00
Q ss_pred cccccccCe--EEEccC-CeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC
Q 039428 201 YKNVFGLNG--IVYHPD-GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT 263 (335)
Q Consensus 201 ~~~~~~p~G--ia~~~d-g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g 263 (335)
..+.. ..++++ |.+|++-.+++.|+.++...+ ....+.... . ..--.|+++-|..
T Consensus 261 ----~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~--~~~~l~~~~-s-~~p~~g~~f~Pkr 318 (568)
T PTZ00420 261 ----NASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG--SIRKVNEYK-S-CSPFRSFGFLPKQ 318 (568)
T ss_pred ----CCccceEEeeeCCCCCEEEEEECCCeEEEEEccCC--cEEeecccc-c-CCCccceEEcccc
Confidence 01222 244554 689999999999999998765 333332110 0 0112577887763
No 145
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.13 E-value=0.12 Score=47.88 Aligned_cols=203 Identities=15% Similarity=0.156 Sum_probs=112.2
Q ss_pred CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeC----CCCeEEEEEec
Q 039428 46 SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDR----PRNRLLVAFTD 121 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~----~~g~l~v~~~D 121 (335)
+-...-.+++|+|||..+.....+|+|..||+..|+- .. +. .++.. .+..+++..| ...+.++. +
T Consensus 155 gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~----~g--~~--l~gH~-K~It~Lawep~hl~p~~r~las-~- 223 (480)
T KOG0271|consen 155 GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ----IG--RA--LRGHK-KWITALAWEPLHLVPPCRRLAS-S- 223 (480)
T ss_pred CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc----cc--cc--ccCcc-cceeEEeecccccCCCccceec-c-
Confidence 3344678999999999877778899999999766651 11 01 11111 2445666543 13454442 1
Q ss_pred CCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccc
Q 039428 122 VLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEW 200 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~ 200 (335)
..+ +.+.+||...+..+.. +.+. -....-+.-..+|-+| +.+...+|.+++.. |+..+.+..
T Consensus 224 -skD--g~vrIWd~~~~~~~~~--lsgH---T~~VTCvrwGG~gliy-SgS~DrtIkvw~a~dG~~~r~lkG-------- 286 (480)
T KOG0271|consen 224 -SKD--GSVRIWDTKLGTCVRT--LSGH---TASVTCVRWGGEGLIY-SGSQDRTIKVWRALDGKLCRELKG-------- 286 (480)
T ss_pred -cCC--CCEEEEEccCceEEEE--eccC---ccceEEEEEcCCceEE-ecCCCceEEEEEccchhHHHhhcc--------
Confidence 122 4599999987765533 2111 1112223333344444 56777888888764 444332211
Q ss_pred cccccccCeEEEc------------------------------------cCCeEEEEECCCCEEEEEeCCCCceeEEEEe
Q 039428 201 YKNVFGLNGIVYH------------------------------------PDGFLIVIHMCSGNLFKIDIRKEEEEVKLIE 244 (335)
Q Consensus 201 ~~~~~~p~Gia~~------------------------------------~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~ 244 (335)
.....|.|+++ ..+...|+-+.+..++..++...+ +.+.
T Consensus 287 --HahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k---kpi~ 361 (480)
T KOG0271|consen 287 --HAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK---KPIT 361 (480)
T ss_pred --cchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc---cchh
Confidence 00112222222 123457888888888888776542 1221
Q ss_pred -ccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 245 -LRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 245 -~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
..| + .....-+.+.||++++.+..-..+++..+-.+|
T Consensus 362 rmtg-H-q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG 399 (480)
T KOG0271|consen 362 RMTG-H-QALVNHVSFSPDGRYIASASFDKSVKLWDGRTG 399 (480)
T ss_pred hhhc-h-hhheeeEEECCCccEEEEeecccceeeeeCCCc
Confidence 223 2 244678999999886666444466776665443
No 146
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=97.11 E-value=0.047 Score=54.42 Aligned_cols=233 Identities=16% Similarity=0.321 Sum_probs=130.8
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCC-C--Ccc-eeeee---------EEeecC--C----cCC--CCcceEEEe
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEY-S--PGT-VLEEV---------KLVKED--D----VVG--NATMGIAVD 109 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~-~--~~~-v~~~~---------~~~~~~--~----~~~--~~p~Gi~~d 109 (335)
-.+..+++++.++..+..+..|++|.....+ . +.. -+.+. ...... + +.| +...|..+.
T Consensus 381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFs 460 (707)
T KOG0263|consen 381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFS 460 (707)
T ss_pred ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeec
Confidence 3566788888877777777777777632111 0 000 00000 000000 0 011 345899999
Q ss_pred CCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC--CCeEEEEccCCcEE
Q 039428 110 RPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV--SSKIWKVGVEGQLL 187 (335)
Q Consensus 110 ~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~--~~~I~~~d~~g~~~ 187 (335)
| +.++.+.++ .+ ..+..|.+++..-...... . ....+++.|.|.|..|+|-+. +.++|-.|-. ..+
T Consensus 461 P-d~rfLlScS---ED--~svRLWsl~t~s~~V~y~G----H-~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~Pl 528 (707)
T KOG0263|consen 461 P-DRRFLLSCS---ED--SSVRLWSLDTWSCLVIYKG----H-LAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPL 528 (707)
T ss_pred c-cccceeecc---CC--cceeeeecccceeEEEecC----C-CcceeeEEecCCceEEEecCCCceeeeeecccC-Cch
Confidence 8 555655322 22 2355566655433322211 1 234589999999976666554 3456655542 233
Q ss_pred EEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEE
Q 039428 188 SIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVV 267 (335)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~v 267 (335)
+++ .. ...-.+.+.|.|..+...+.+....+...|...+. .+++|. | + -.....+++.|.|+..+
T Consensus 529 Rif-----ag-----hlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-~VRiF~--G-H-~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 529 RIF-----AG-----HLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-SVRIFT--G-H-KGPVTALAFSPCGRYLA 593 (707)
T ss_pred hhh-----cc-----cccccceEEECCcccccccCCCCceEEEEEcCCCc-EEEEec--C-C-CCceEEEEEcCCCceEe
Confidence 322 21 12336789999988666677777888888887764 667774 3 2 13357899999999777
Q ss_pred EecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe-CCeEEEEe
Q 039428 268 AGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK-DGRVYLSH 315 (335)
Q Consensus 268 a~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g~lyV~~ 315 (335)
++...+.+.+.+...+ +.+..+.+. .....+++|. +|.+.|+.
T Consensus 594 Sg~ed~~I~iWDl~~~----~~v~~l~~H-t~ti~SlsFS~dg~vLasg 637 (707)
T KOG0263|consen 594 SGDEDGLIKIWDLANG----SLVKQLKGH-TGTIYSLSFSRDGNVLASG 637 (707)
T ss_pred ecccCCcEEEEEcCCC----cchhhhhcc-cCceeEEEEecCCCEEEec
Confidence 7665677888887654 333333222 1223567774 66666643
No 147
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=97.11 E-value=0.057 Score=54.38 Aligned_cols=196 Identities=14% Similarity=0.134 Sum_probs=116.7
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.....++++.=||.-+++...|.|-+++.+.|- ....+...+. ......|+++|. .+++.|+ ++..|
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi------~r~sf~~~~a-h~~~V~gla~D~-~n~~~vs-a~~~G---- 515 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGI------HRKSFGDSPA-HKGEVTGLAVDG-TNRLLVS-AGADG---- 515 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCe------eecccccCcc-ccCceeEEEecC-CCceEEE-ccCcc----
Confidence 345678888889988888889999999876553 1112321122 224568999995 7888775 34433
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
-+.-||...+.+.....+. ..+..+.-.+.-.+++..-..-.|..+|....... ..|.. .....|
T Consensus 516 ilkfw~f~~k~l~~~l~l~------~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv----R~f~g-----h~nrit 580 (910)
T KOG1539|consen 516 ILKFWDFKKKVLKKSLRLG------SSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV----REFWG-----HGNRIT 580 (910)
T ss_pred eEEEEecCCcceeeeeccC------CCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh----HHhhc-----ccccee
Confidence 3777888776655444441 22334444444334444344557777776644322 12221 223488
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE-ecCCCeEEEE
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA-GNPYPSARLV 278 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va-~~~~~~~~v~ 278 (335)
.++|+|||+-.++.+-++.|..+|+-... ..-.+.+. .-+-.+.+.|+|.+..+ ..+.+++...
T Consensus 581 d~~FS~DgrWlisasmD~tIr~wDlpt~~-lID~~~vd-----~~~~sls~SPngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 581 DMTFSPDGRWLISASMDSTIRTWDLPTGT-LIDGLLVD-----SPCTSLSFSPNGDFLATVHVDQNGIYLW 645 (910)
T ss_pred eeEeCCCCcEEEEeecCCcEEEEeccCcc-eeeeEecC-----CcceeeEECCCCCEEEEEEecCceEEEE
Confidence 99999999544555567788888887763 33333332 12567888888865544 4433555443
No 148
>PHA02713 hypothetical protein; Provisional
Probab=97.09 E-value=0.24 Score=49.62 Aligned_cols=181 Identities=12% Similarity=0.063 Sum_probs=95.5
Q ss_pred CCCEEEEEec------CCeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 59 VGRRFLVSFL------DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 59 ~g~~~~~~~~------~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
++.+|+++.. ...++++|+.... |...+.+.. ..-.++++- +|.|||..+.........+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~----------W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve 370 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKI----------HVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIE 370 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCe----------EeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEE
Confidence 4567777632 1468899864332 433343321 122455554 68999974321111124589
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-----------------------CCeEEEEccCCcEEE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-----------------------SSKIWKVGVEGQLLS 188 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-----------------------~~~I~~~d~~g~~~~ 188 (335)
+||+.+++-....+.+.+ ......++ -+|++||.... ...+.++||....-.
T Consensus 371 ~Ydp~~~~W~~~~~mp~~---r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~ 445 (557)
T PHA02713 371 CYTMGDDKWKMLPDMPIA---LSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE 445 (557)
T ss_pred EEECCCCeEEECCCCCcc---cccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe
Confidence 999998754433333211 22222233 36899997532 246888998765433
Q ss_pred EecCCccccccccccccccCeEEEccCCeEEEEECCC------CEEEEEeCCC-CceeEEEEeccCCcCCCCCCeEEEcC
Q 039428 189 IIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCS------GNLFKIDIRK-EEEEVKLIELRGGSSLSLGDGLALLS 261 (335)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~------~~v~~~d~~~-~~~~~~~~~~~g~~~~~~pdGia~d~ 261 (335)
.+. .+.. .....+++.- +|.|||.-..+ ..+.++|+.. + ....+..-... ..--|+++-
T Consensus 446 ~v~--~m~~------~r~~~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~--~W~~~~~m~~~--r~~~~~~~~- 511 (557)
T PHA02713 446 TLP--NFWT------GTIRPGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYN--GWELITTTESR--LSALHTILH- 511 (557)
T ss_pred ecC--CCCc------ccccCcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCC--CeeEccccCcc--cccceeEEE-
Confidence 221 1111 1123455554 78999875432 3578999997 5 44433211101 112455554
Q ss_pred CCcEEEEec
Q 039428 262 PTKLVVAGN 270 (335)
Q Consensus 262 ~g~l~va~~ 270 (335)
+|++|+.+.
T Consensus 512 ~~~iyv~Gg 520 (557)
T PHA02713 512 DNTIMMLHC 520 (557)
T ss_pred CCEEEEEee
Confidence 579999954
No 149
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.05 E-value=0.081 Score=53.06 Aligned_cols=200 Identities=15% Similarity=0.127 Sum_probs=125.0
Q ss_pred eeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 53 TAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 53 gia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
.+.|+.++ .++.+..+.+|.-|++..... +. ....+. -.+.|+|+|-+++.|+. ....+ .+..
T Consensus 374 DlSWSKn~-fLLSSSMDKTVRLWh~~~~~C----L~---~F~Hnd----fVTcVaFnPvDDryFiS--GSLD~---KvRi 436 (712)
T KOG0283|consen 374 DLSWSKNN-FLLSSSMDKTVRLWHPGRKEC----LK---VFSHND----FVTCVAFNPVDDRYFIS--GSLDG---KVRL 436 (712)
T ss_pred ecccccCC-eeEeccccccEEeecCCCcce----ee---EEecCC----eeEEEEecccCCCcEee--ccccc---ceEE
Confidence 67888765 455556688888887543331 22 334454 46799999988899883 33333 4889
Q ss_pred EECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEE
Q 039428 133 YDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVY 212 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~ 212 (335)
|+....++..-.++ ......+++.|||...|..+.+|.+..++..+.....-..-..... .........|+.+
T Consensus 437 WsI~d~~Vv~W~Dl------~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~-Kk~~~~rITG~Q~ 509 (712)
T KOG0283|consen 437 WSISDKKVVDWNDL------RDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNK-KKKQGKRITGLQF 509 (712)
T ss_pred eecCcCeeEeehhh------hhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccC-ccccCceeeeeEe
Confidence 99888777744454 2456679999999988889999999999998865442100000100 0011225889999
Q ss_pred ccCC--eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 213 HPDG--FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 213 ~~dg--~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
.|.. .|.|+. .+.+|..||....+ .+..+... .......-..+..||+.+|+......+.+.+.
T Consensus 510 ~p~~~~~vLVTS-nDSrIRI~d~~~~~-lv~KfKG~--~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 510 FPGDPDEVLVTS-NDSRIRIYDGRDKD-LVHKFKGF--RNTSSQISASFSSDGKHIVSASEDSWVYIWKN 575 (712)
T ss_pred cCCCCCeEEEec-CCCceEEEeccchh-hhhhhccc--ccCCcceeeeEccCCCEEEEeecCceEEEEeC
Confidence 9754 588775 56679999985542 33333311 11122345666778887777554445555543
No 150
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.04 E-value=0.043 Score=50.67 Aligned_cols=190 Identities=14% Similarity=0.118 Sum_probs=114.1
Q ss_pred cCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEe-----------C---
Q 039428 45 HSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVD-----------R--- 110 (335)
Q Consensus 45 ~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d-----------~--- 110 (335)
.+-..--.++.|..+| ++|.+..+++|-+|+..+|.. .. .++... .+.+.|+.+ +
T Consensus 244 sgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~----~r---~lkGHa---hwvN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 244 SGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKL----CR---ELKGHA---HWVNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred ccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhH----HH---hhcccc---hheeeeeccchhhhhccccccccc
Confidence 3333445788888765 666777889999998766542 11 111110 122222222 1
Q ss_pred ---------------------CCCeEEEEEecCCCCccceEEEEECCCC-eEEEEeecCCCccCCCCCCceeECCCCcEE
Q 039428 111 ---------------------PRNRLLVAFTDVLGNKYSALAAYDLSTW-KRLFLTQLSGKSEEKSTADDIAVDAEGNAY 168 (335)
Q Consensus 111 ---------------------~~g~l~v~~~D~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~p~~~~vd~~G~ly 168 (335)
+.+.-.|...|. ..++.|++... +.+..... . ....|.+.|.|||+..
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd-----~tlflW~p~~~kkpi~rmtg----H-q~lVn~V~fSPd~r~I 382 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDD-----FTLFLWNPFKSKKPITRMTG----H-QALVNHVSFSPDGRYI 382 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCC-----ceEEEecccccccchhhhhc----h-hhheeeEEECCCccEE
Confidence 112224433332 35777877532 22211111 1 4678999999999888
Q ss_pred EEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccC
Q 039428 169 VTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRG 247 (335)
Q Consensus 169 V~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g 247 (335)
.+-+....|..++.. |+++..|.. ......-++++.|-+|+|+-+.+..|.+++....+ ...+++|
T Consensus 383 ASaSFDkSVkLW~g~tGk~lasfRG----------Hv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK---l~~DLpG 449 (480)
T KOG0271|consen 383 ASASFDKSVKLWDGRTGKFLASFRG----------HVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK---LKQDLPG 449 (480)
T ss_pred EEeecccceeeeeCCCcchhhhhhh----------ccceeEEEEeccCccEEEEcCCCceEEEEEeeeee---ecccCCC
Confidence 888888899888865 666543321 11125678999999999999999999888888753 2344444
Q ss_pred CcCCCCCCeEEEcCCCcEEEEec
Q 039428 248 GSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 248 ~~~~~~pdGia~d~~g~l~va~~ 270 (335)
+ -.....+...|||...+++.
T Consensus 450 -h-~DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 450 -H-ADEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred -C-CceEEEEEecCCCceeecCC
Confidence 2 12245666668888766644
No 151
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=97.02 E-value=0.16 Score=43.36 Aligned_cols=137 Identities=15% Similarity=0.192 Sum_probs=78.2
Q ss_pred eeEEcCCCCEEEEEec------------CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEe
Q 039428 53 TAKWDDVGRRFLVSFL------------DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFT 120 (335)
Q Consensus 53 gia~d~~g~~~~~~~~------------~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~ 120 (335)
.+.|.++|+.+.+... ...|++++..+.. .. .+.... ......++.+|.+.++.|+.+
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~-----~~---~i~l~~--~~~I~~~~WsP~g~~favi~g 79 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP-----VE---SIELKK--EGPIHDVAWSPNGNEFAVIYG 79 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc-----cc---eeeccC--CCceEEEEECcCCCEEEEEEc
Confidence 4567777765555421 1357888643222 12 221111 124678999986566666543
Q ss_pred cCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC---CCCeEEEEccCCcEEEEecCCcccc
Q 039428 121 DVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV---VSSKIWKVGVEGQLLSIIRSPLFTA 197 (335)
Q Consensus 121 D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~---~~~~I~~~d~~g~~~~~~~~~~~~~ 197 (335)
+.. ..+..||.+...+. .+. ....|.+..+|+|+..+... .+|.|..+|.+..... . .+.
T Consensus 80 ~~~----~~v~lyd~~~~~i~---~~~-----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i-~---~~~- 142 (194)
T PF08662_consen 80 SMP----AKVTLYDVKGKKIF---SFG-----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI-S---TFE- 142 (194)
T ss_pred cCC----cccEEEcCcccEeE---eec-----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe-e---ccc-
Confidence 322 35889998743322 221 23557899999998666532 3577899998743322 1 111
Q ss_pred ccccccccccCeEEEccCC-eEEEEE
Q 039428 198 KEWYKNVFGLNGIVYHPDG-FLIVIH 222 (335)
Q Consensus 198 ~~~~~~~~~p~Gia~~~dg-~Lyvad 222 (335)
......++++||| ++..+.
T Consensus 143 ------~~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 143 ------HSDATDVEWSPDGRYLATAT 162 (194)
T ss_pred ------cCcEEEEEEcCCCCEEEEEE
Confidence 1236899999999 444443
No 152
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=97.00 E-value=0.23 Score=44.02 Aligned_cols=202 Identities=13% Similarity=0.159 Sum_probs=120.9
Q ss_pred ceeeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.-..+||+|. |.+++.+..+..|..++...+. . ..-+..+. .+ -.+....++..| .|++.++ +... .
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~---s-~~ck~vld-~~-hkrsVRsvAwsp-~g~~La~-aSFD----~ 83 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD---S-WTCKTVLD-DG-HKRSVRSVAWSP-HGRYLAS-ASFD----A 83 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCC---c-EEEEEecc-cc-chheeeeeeecC-CCcEEEE-eecc----c
Confidence 4579999998 7777777878889988743222 1 11112321 11 114578899997 7775543 3332 2
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC--CcEEEEecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE--GQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~--g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.+..|.-..++......++++ .+..-.++..++|++..+-+....||.+..+ +++.... .+. +...-
T Consensus 84 t~~Iw~k~~~efecv~~lEGH---EnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~a---VL~-----~HtqD 152 (312)
T KOG0645|consen 84 TVVIWKKEDGEFECVATLEGH---ENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIA---VLQ-----EHTQD 152 (312)
T ss_pred eEEEeecCCCceeEEeeeecc---ccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEe---eec-----ccccc
Confidence 466666556666655555443 4566779999999999998888888877655 4443310 010 11223
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCC-CCc-eeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEE
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIR-KEE-EEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVE 279 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~-~~~-~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~ 279 (335)
...+.+.|..-|+++-+-.+.|..++-. ++. ...+.+. + . -.....++|++.| +|..+.. ...+++.+
T Consensus 153 VK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~--g-~-~~TVW~~~F~~~G~rl~s~sd-D~tv~Iw~ 223 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD--G-H-ENTVWSLAFDNIGSRLVSCSD-DGTVSIWR 223 (312)
T ss_pred ccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEec--C-c-cceEEEEEecCCCceEEEecC-CcceEeee
Confidence 6789999977777777666655444433 320 0233332 3 2 2357889999988 4555533 23455544
No 153
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.96 E-value=0.13 Score=45.99 Aligned_cols=115 Identities=20% Similarity=0.196 Sum_probs=66.3
Q ss_pred CeEEEEeecCCCccCCCCCCceeECCC-C-cEEEEeCCCCeEEEEccCCcEEEE-ecCCccccccccccccccCeEEEcc
Q 039428 138 WKRLFLTQLSGKSEEKSTADDIAVDAE-G-NAYVTDVVSSKIWKVGVEGQLLSI-IRSPLFTAKEWYKNVFGLNGIVYHP 214 (335)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~p~~~~vd~~-G-~lyV~d~~~~~I~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~p~Gia~~~ 214 (335)
|+.+....+ ..+-.||+++|. . .+.++-...---+.||+++....+ +-+. ....+.-+| +|++
T Consensus 58 Gk~v~~~~l------paR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~-------~~RHfyGHG-vfs~ 123 (366)
T COG3490 58 GKIVFATAL------PARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQ-------EGRHFYGHG-VFSP 123 (366)
T ss_pred Cceeeeeec------ccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecc-------cCceeeccc-ccCC
Confidence 445544444 245667888886 3 366666666667788888654321 1110 001122344 7899
Q ss_pred CC-eEEEEECC----CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 215 DG-FLIVIHMC----SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 215 dg-~Lyvad~~----~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
|| .||.++.+ .+-|-.+|....-..+..++..| -+|.-|.+.+||++.|.-+
T Consensus 124 dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~G----iGpHev~lm~DGrtlvvan 180 (366)
T COG3490 124 DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHG----IGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCcEEEeecCCCCCCCceEEEEecccccceecccccCC----cCcceeEEecCCcEEEEeC
Confidence 99 78887643 45676777664310222333333 3599999999997655544
No 154
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.95 E-value=0.18 Score=47.60 Aligned_cols=225 Identities=14% Similarity=0.129 Sum_probs=126.0
Q ss_pred eeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 53 TAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 53 gia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
.+|+++||..+.++..+..|+.|+..+.+. ...+.+.. +...++++-....++|.++.|. .|..
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~eh---------v~~~~ghr-~~V~~L~fr~gt~~lys~s~Dr------svkv 270 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEH---------VKVFKGHR-GAVSSLAFRKGTSELYSASADR------SVKV 270 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccch---------hhcccccc-cceeeeeeecCccceeeeecCC------ceEE
Confidence 679999998666666678888998543331 11122221 3467888876678999987764 3777
Q ss_pred EECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC--CCCeEEEEccCCcEEEEecCCccccccccccccccCeE
Q 039428 133 YDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV--VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~--~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
|+.+-...+- .+-+ . .....++-.-..++..-... .+-++|++ ++...+. |.. ....+..+
T Consensus 271 w~~~~~s~ve--tlyG--H-qd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqli------frg-----~~~sidcv 333 (479)
T KOG0299|consen 271 WSIDQLSYVE--TLYG--H-QDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLI------FRG-----GEGSIDCV 333 (479)
T ss_pred EehhHhHHHH--HHhC--C-ccceeeechhcccceEEeccccceeEEEec-cccceee------eeC-----CCCCeeeE
Confidence 7765432220 1100 0 11222233333444332221 13577777 3322222 111 12357888
Q ss_pred EEccCCeEEEEECCCCEEEEEeCCCCceeEEEEecc-CCc----CCC---CCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR-GGS----SLS---LGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~-g~~----~~~---~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
++-.+. =||+-+.+|.|.-.++...+ .+...... |-. +++ .-.++++-+..+|+.++..++.+++....+
T Consensus 334 ~~In~~-HfvsGSdnG~IaLWs~~KKk-plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~ 411 (479)
T KOG0299|consen 334 AFINDE-HFVSGSDNGSIALWSLLKKK-PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIED 411 (479)
T ss_pred EEeccc-ceeeccCCceEEEeeecccC-ceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecC
Confidence 888554 45677889999888887654 33332221 100 011 235677777778888866556677766667
Q ss_pred CcEEEEEeeeecCCCCCcceEEEEe--CCeEEEE
Q 039428 283 GWETASVVAKFNGPTHRVATAATVK--DGRVYLS 314 (335)
Q Consensus 283 ~~~~~~~~~~~~~p~~~~Pt~va~~--~g~lyV~ 314 (335)
+.+..+++..+..+ .+.++++|. +.+|++.
T Consensus 412 g~r~i~~l~~ls~~--GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 412 GLRAINLLYSLSLV--GFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred Cccccceeeecccc--cEEEEEEEccCCCEEEEe
Confidence 75555566655433 334578873 5557764
No 155
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.94 E-value=0.42 Score=46.20 Aligned_cols=136 Identities=11% Similarity=0.095 Sum_probs=72.4
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeC--CCCeEEE--EccC----CcEEEEecCCccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDV--VSSKIWK--VGVE----GQLLSIIRSPLFTAK 198 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~--~~~~I~~--~d~~----g~~~~~~~~~~~~~~ 198 (335)
..|+++++++++......+.+ .....++.|||+ +.++.. .+..++. ++.+ ++..++... .
T Consensus 211 ~~I~~~~l~~g~~~~lt~~~g------~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~-~---- 279 (428)
T PRK01029 211 PKIFLGSLENPAGKKILALQG------NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE-A---- 279 (428)
T ss_pred ceEEEEECCCCCceEeecCCC------CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC-C----
Confidence 579999999887664444421 222468899995 444432 2335555 3433 222221110 0
Q ss_pred cccccccccCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEec--CC
Q 039428 199 EWYKNVFGLNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGN--PY 272 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~--~~ 272 (335)
.......+++||| .|+++... ..+||+++.+..++..+.+.... .......+.|||+ ++++.. +.
T Consensus 280 -----~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~----~~~~~p~wSPDG~~Laf~~~~~g~ 350 (428)
T PRK01029 280 -----FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKY----RNSSCPAWSPDGKKIAFCSVIKGV 350 (428)
T ss_pred -----CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCC----CCccceeECCCCCEEEEEEcCCCC
Confidence 0113457999999 56655432 34799998764311334443221 1234567888886 444422 22
Q ss_pred CeEEEEEcCCC
Q 039428 273 PSARLVESSDG 283 (335)
Q Consensus 273 ~~~~v~~~~~~ 283 (335)
..+.+++...+
T Consensus 351 ~~I~v~dl~~g 361 (428)
T PRK01029 351 RQICVYDLATG 361 (428)
T ss_pred cEEEEEECCCC
Confidence 45777776544
No 156
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.87 E-value=0.036 Score=50.00 Aligned_cols=197 Identities=12% Similarity=0.126 Sum_probs=114.9
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
-++.++.+..++..+..+|.|-+|...+|.. +. ++-.... .....+.++.++..+.-+.-|. .+.
T Consensus 267 lci~FSRDsEMlAsGsqDGkIKvWri~tG~C----lR--rFdrAHt---kGvt~l~FSrD~SqiLS~sfD~------tvR 331 (508)
T KOG0275|consen 267 LCISFSRDSEMLASGSQDGKIKVWRIETGQC----LR--RFDRAHT---KGVTCLSFSRDNSQILSASFDQ------TVR 331 (508)
T ss_pred EEEeecccHHHhhccCcCCcEEEEEEecchH----HH--Hhhhhhc---cCeeEEEEccCcchhhcccccc------eEE
Confidence 5677777777766666677765555445652 11 1211111 2455777876555565532221 344
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIV 211 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia 211 (335)
.--+++|+... .+.+ . .++.|+..+.+||+-.++-+..+.|.+++.+...-. ..|..+ ++....|.+.
T Consensus 332 iHGlKSGK~LK--EfrG--H-sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~----~Tfk~~---~~d~~vnsv~ 399 (508)
T KOG0275|consen 332 IHGLKSGKCLK--EFRG--H-SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECL----STFKPL---GTDYPVNSVI 399 (508)
T ss_pred EeccccchhHH--HhcC--c-cccccceEEcCCCCeEEEecCCccEEEecCcchhhh----hhccCC---CCcccceeEE
Confidence 55566665541 1211 1 478899999999998888888999999987643211 134332 1334578888
Q ss_pred EccCC--eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEEEc
Q 039428 212 YHPDG--FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLVES 280 (335)
Q Consensus 212 ~~~dg--~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~ 280 (335)
+-|.+ ++.|++ .++.|+..+..+. .++.+.- |.+.-+.--..++.|.|. +|+.+- ..-...+..
T Consensus 400 ~~PKnpeh~iVCN-rsntv~imn~qGQ--vVrsfsS-GkREgGdFi~~~lSpkGewiYcigE-D~vlYCF~~ 466 (508)
T KOG0275|consen 400 LLPKNPEHFIVCN-RSNTVYIMNMQGQ--VVRSFSS-GKREGGDFINAILSPKGEWIYCIGE-DGVLYCFSV 466 (508)
T ss_pred EcCCCCceEEEEc-CCCeEEEEeccce--EEeeecc-CCccCCceEEEEecCCCcEEEEEcc-CcEEEEEEe
Confidence 88876 677777 5778999999887 6777652 322111122455667775 444432 233444443
No 157
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.85 E-value=0.06 Score=49.44 Aligned_cols=151 Identities=15% Similarity=0.279 Sum_probs=95.2
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCc-eeECCC-CcEEEE---eCCCCeE
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADD-IAVDAE-GNAYVT---DVVSSKI 177 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~-~~vd~~-G~lyV~---d~~~~~I 177 (335)
...+..+ +.||.|+..+ .|++||.+..+++..++..+ ..|.+ .+..++ .+-|++ +...|.|
T Consensus 90 IL~VrmN--r~RLvV~Lee-------~IyIydI~~MklLhTI~t~~-----~n~~gl~AlS~n~~n~ylAyp~s~t~GdV 155 (391)
T KOG2110|consen 90 ILAVRMN--RKRLVVCLEE-------SIYIYDIKDMKLLHTIETTP-----PNPKGLCALSPNNANCYLAYPGSTTSGDV 155 (391)
T ss_pred eEEEEEc--cceEEEEEcc-------cEEEEecccceeehhhhccC-----CCccceEeeccCCCCceEEecCCCCCceE
Confidence 4566776 6899998764 39999999888775544321 22332 233443 344554 4557899
Q ss_pred EEEccCCcE-EEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEE-eCCCCceeEEEEeccCCcCCCCCC
Q 039428 178 WKVGVEGQL-LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKI-DIRKEEEEVKLIELRGGSSLSLGD 255 (335)
Q Consensus 178 ~~~d~~g~~-~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~-d~~~~~~~~~~~~~~g~~~~~~pd 255 (335)
+.+|...-. ...+.. .......|+|++||.+..+-+..|+|.|+ ....++ .+..|.. |-. ...-.
T Consensus 156 ~l~d~~nl~~v~~I~a----------H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~-kl~eFRR-G~~-~~~Iy 222 (391)
T KOG2110|consen 156 VLFDTINLQPVNTINA----------HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQ-KLYEFRR-GTY-PVSIY 222 (391)
T ss_pred EEEEcccceeeeEEEe----------cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCcc-EeeeeeC-Cce-eeEEE
Confidence 999976432 222211 11236789999999999999999987666 444443 5555543 312 34467
Q ss_pred eEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 256 GLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 256 Gia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
-+++++++.+..+......+-++..
T Consensus 223 SL~Fs~ds~~L~~sS~TeTVHiFKL 247 (391)
T KOG2110|consen 223 SLSFSPDSQFLAASSNTETVHIFKL 247 (391)
T ss_pred EEEECCCCCeEEEecCCCeEEEEEe
Confidence 8999999886666443366777664
No 158
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=96.84 E-value=0.012 Score=43.22 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=27.1
Q ss_pred ccccCeEEEccCC-eEEEEECCCCEEEEEeCC
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIR 234 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~ 234 (335)
...||||+++|++ .|||++...+.|+++...
T Consensus 53 ~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 53 FSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred CCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3459999999998 999999999999988754
No 159
>PHA02713 hypothetical protein; Provisional
Probab=96.83 E-value=0.56 Score=46.98 Aligned_cols=185 Identities=10% Similarity=0.087 Sum_probs=95.7
Q ss_pred ceEEEeCCCCeEEEEEecC-CCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC-----CeE
Q 039428 104 MGIAVDRPRNRLLVAFTDV-LGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS-----SKI 177 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~-~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~-----~~I 177 (335)
.++++- ++.|||+.+-. .....+.+.+||+.++.-....+.+ .+...+ .++.-+|.+|+....+ ..+
T Consensus 297 ~~~a~l--~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~---~~R~~~--~~~~~~g~IYviGG~~~~~~~~sv 369 (557)
T PHA02713 297 YASAIV--DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMI---KNRCRF--SLAVIDDTIYAIGGQNGTNVERTI 369 (557)
T ss_pred eEEEEE--CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCc---chhhce--eEEEECCEEEEECCcCCCCCCceE
Confidence 455554 68999974311 1111256899999887543222221 111222 2222368899976532 458
Q ss_pred EEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECC-----------------------CCEEEEEeCC
Q 039428 178 WKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC-----------------------SGNLFKIDIR 234 (335)
Q Consensus 178 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~-----------------------~~~v~~~d~~ 234 (335)
.++|+....-..+. .+.. ...-.+.+.. +|.||+.-.. .+.+.++|+.
T Consensus 370 e~Ydp~~~~W~~~~--~mp~------~r~~~~~~~~-~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~ 440 (557)
T PHA02713 370 ECYTMGDDKWKMLP--DMPI------ALSSYGMCVL-DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTV 440 (557)
T ss_pred EEEECCCCeEEECC--CCCc------ccccccEEEE-CCEEEEEeCCCcccccccccccccccccccccccceEEEECCC
Confidence 88998765433211 1111 1112234433 7899986432 2468999998
Q ss_pred CCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCC------CeEEEEEcCC--CcEEEEEeeeecCCCCCcceEEEE
Q 039428 235 KEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPY------PSARLVESSD--GWETASVVAKFNGPTHRVATAATV 306 (335)
Q Consensus 235 ~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~------~~~~v~~~~~--~~~~~~~~~~~~~p~~~~Pt~va~ 306 (335)
.+ ....+.--. . -...-+++.- +|.+||.+... ..+.+++... .|... ..+..+.. -.++++
T Consensus 441 td--~W~~v~~m~-~-~r~~~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~---~~m~~~r~--~~~~~~ 510 (557)
T PHA02713 441 NN--IWETLPNFW-T-GTIRPGVVSH-KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELI---TTTESRLS--ALHTIL 510 (557)
T ss_pred CC--eEeecCCCC-c-ccccCcEEEE-CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEc---cccCcccc--cceeEE
Confidence 87 444443110 0 0112345543 57999995421 1233455553 37643 23322222 235666
Q ss_pred eCCeEEEE
Q 039428 307 KDGRVYLS 314 (335)
Q Consensus 307 ~~g~lyV~ 314 (335)
-+|+|||.
T Consensus 511 ~~~~iyv~ 518 (557)
T PHA02713 511 HDNTIMML 518 (557)
T ss_pred ECCEEEEE
Confidence 79999984
No 160
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.83 E-value=0.39 Score=44.16 Aligned_cols=155 Identities=9% Similarity=0.056 Sum_probs=98.3
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
-.++.+|+.++..+...+..-+.|+..++..+ - ..++. +.+...+.++. +|.+.++ +|..+ .|.
T Consensus 68 Favsl~P~~~l~aTGGgDD~AflW~~~~ge~~----~-----eltgH-KDSVt~~~Fsh-dgtlLAT-GdmsG----~v~ 131 (399)
T KOG0296|consen 68 FAVSLHPNNNLVATGGGDDLAFLWDISTGEFA----G-----ELTGH-KDSVTCCSFSH-DGTLLAT-GDMSG----KVL 131 (399)
T ss_pred EEEEeCCCCceEEecCCCceEEEEEccCCcce----e-----EecCC-CCceEEEEEcc-CceEEEe-cCCCc----cEE
Confidence 47788995554444466667677765455531 1 12221 13567788874 6666554 77764 499
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccCeE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
+++.+++...+....+ ..-..=+.-.|.+.++.+.+..+.+|.+.... ...+++ .. .....+.=
T Consensus 132 v~~~stg~~~~~~~~e-----~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~-----~G-----h~~~ct~G 196 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQE-----VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVM-----SG-----HNSPCTCG 196 (399)
T ss_pred EEEcccCceEEEeecc-----cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEe-----cC-----CCCCcccc
Confidence 9999988777554311 11112266788899999999999999998765 333332 11 11124445
Q ss_pred EEccCCeEEEEECCCCEEEEEeCCCCc
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIRKEE 237 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~~~~ 237 (335)
.|.|||...++-..++.|.+.++...+
T Consensus 197 ~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 197 EFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred cccCCCceEEEEecCceEEEEecCCCc
Confidence 788899666666679999999999874
No 161
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.83 E-value=0.058 Score=52.43 Aligned_cols=149 Identities=18% Similarity=0.204 Sum_probs=85.8
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..+.+|.+|++|+.+ ...+++||+.+++ .++ .. .+.. ....+.+..|. ++++||.+ |. .++
T Consensus 168 ~aLv~D~~g~lWvgT--~dGL~~fd~~~gk----alq---l~-s~~~-dk~I~al~~d~-qg~LWVGT-dq------Gv~ 228 (671)
T COG3292 168 VALVFDANGRLWVGT--PDGLSYFDAGRGK----ALQ---LA-SPPL-DKAINALIADV-QGRLWVGT-DQ------GVY 228 (671)
T ss_pred eeeeeeccCcEEEec--CCcceEEccccce----EEE---cC-CCcc-hhhHHHHHHHh-cCcEEEEe-cc------ceE
Confidence 466788888766554 5578999865444 121 21 1111 12445677774 89999964 32 388
Q ss_pred EEECCCCeEE-EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeE-EEEccCCcEEEEecCCccccccccccccccCe
Q 039428 132 AYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKI-WKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 132 ~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I-~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
..++++.+.. ....+ +.....-+.-|.+|++|+... +|.. ++. ++..... +... ........|+
T Consensus 229 ~~e~~G~~~sn~~~~l-----p~~~I~ll~qD~qG~lWiGTe-nGl~r~~l-~rq~Lq~----~~~~---~~l~~S~vns 294 (671)
T COG3292 229 LQEAEGWRASNWGPML-----PSGNILLLVQDAQGELWIGTE-NGLWRTRL-PRQGLQI----PLSK---MHLGVSTVNS 294 (671)
T ss_pred EEchhhccccccCCCC-----cchheeeeecccCCCEEEeec-ccceeEec-CCCCccc----cccc---cCCccccccc
Confidence 8888774332 11111 123445577788999999744 3333 333 3322211 0101 0112334799
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCC
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~ 235 (335)
+..|.||.||+.. .+.++++....
T Consensus 295 L~~D~dGsLWv~t--~~giv~~~~a~ 318 (671)
T COG3292 295 LWLDTDGSLWVGT--YGGIVRYLTAD 318 (671)
T ss_pred eeeccCCCEeeec--cCceEEEecch
Confidence 9999999999985 45577776654
No 162
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.82 E-value=0.065 Score=49.94 Aligned_cols=198 Identities=11% Similarity=0.107 Sum_probs=117.4
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
+..+.+.+|-|||..+++++.++.|..+|. +|+. .. .| .+........+++.+++..++....|.
T Consensus 312 ~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdl-Dgn~----~~--~W---~gvr~~~v~dlait~Dgk~vl~v~~d~----- 376 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVTGSPDRTIIMWDL-DGNI----LG--NW---EGVRDPKVHDLAITYDGKYVLLVTVDK----- 376 (519)
T ss_pred CCCcceeEEccCCceeEecCCCCcEEEecC-Ccch----hh--cc---cccccceeEEEEEcCCCcEEEEEeccc-----
Confidence 355678899999999999988999999984 6762 11 12 221112467888887566676654443
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
.+..|+.++..-+-.+.. ........+..+|.+.+.+-..+.|..+|.+..... ..|.. ..+....
T Consensus 377 -~i~l~~~e~~~dr~lise------~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv----~kY~G---hkq~~fi 442 (519)
T KOG0293|consen 377 -KIRLYNREARVDRGLISE------EQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLV----RKYFG---HKQGHFI 442 (519)
T ss_pred -ceeeechhhhhhhccccc------cCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHH----HHhhc---ccccceE
Confidence 477888765422211111 233456888999999998888999999998733221 01111 0112223
Q ss_pred CeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEE
Q 039428 208 NGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVE 279 (335)
Q Consensus 208 ~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~ 279 (335)
-+-||.-.. ....+-+.+++||..+...++ .+..+ +| + .....-++..|.. .++.+....+.+++..
T Consensus 443 IrSCFgg~~~~fiaSGSED~kvyIWhr~sgk-ll~~L--sG-H-s~~vNcVswNP~~p~m~ASasDDgtIRIWg 511 (519)
T KOG0293|consen 443 IRSCFGGGNDKFIASGSEDSKVYIWHRISGK-LLAVL--SG-H-SKTVNCVSWNPADPEMFASASDDGTIRIWG 511 (519)
T ss_pred EEeccCCCCcceEEecCCCceEEEEEccCCc-eeEee--cC-C-cceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence 444555333 455666778888888887774 33333 34 2 1234556666655 3444433335565543
No 163
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=96.81 E-value=0.27 Score=45.46 Aligned_cols=202 Identities=13% Similarity=0.106 Sum_probs=122.0
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCC-CCcceeeeeE-----E-----eecCC--cCC--CCcceEEEeCCCCe
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEY-SPGTVLEEVK-----L-----VKEDD--VVG--NATMGIAVDRPRNR 114 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~-~~~~v~~~~~-----~-----~~~~~--~~~--~~p~Gi~~d~~~g~ 114 (335)
--+++.++++|.++..+.++..|-.|+.+... .+.+-.+.++ . .+.|- +.| .....+.+++ .+.
T Consensus 195 ~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v 273 (423)
T KOG0313|consen 195 SVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATV 273 (423)
T ss_pred ceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCc
Confidence 46899999999998888889988888721111 0000000000 0 00000 011 2346677774 777
Q ss_pred EEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC---CcEEEEec
Q 039428 115 LLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE---GQLLSIIR 191 (335)
Q Consensus 115 l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~---g~~~~~~~ 191 (335)
+|-+.-| +.|.+||+.++........ ....+.+...+.-++.++.+...-|..+||. |+....
T Consensus 274 ~yS~SwD------HTIk~WDletg~~~~~~~~------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~-- 339 (423)
T KOG0313|consen 274 IYSVSWD------HTIKVWDLETGGLKSTLTT------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQ-- 339 (423)
T ss_pred eEeeccc------ceEEEEEeecccceeeeec------CcceeEeecccccceeeecCCCCceeecCCCCCCCceeEE--
Confidence 8875443 5799999998876532211 3456778888888899998888888889986 333321
Q ss_pred CCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc-CCCcEEEEe
Q 039428 192 SPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL-SPTKLVVAG 269 (335)
Q Consensus 192 ~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d-~~g~l~va~ 269 (335)
.|.. ...-..++.++|.. +++++-+-++++...|.+..+..+..+...+++ =+++| .++.+.|++
T Consensus 340 --s~~g-----H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK------vl~vdW~~~~~IvSG 406 (423)
T KOG0313|consen 340 --SLIG-----HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK------VLSVDWNEGGLIVSG 406 (423)
T ss_pred --eeec-----chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce------EEEEeccCCceEEec
Confidence 1211 11226789999977 999999999999999988863233444322211 23444 335566665
Q ss_pred cCCCeEEEEE
Q 039428 270 NPYPSARLVE 279 (335)
Q Consensus 270 ~~~~~~~v~~ 279 (335)
...+.+++..
T Consensus 407 GaD~~l~i~~ 416 (423)
T KOG0313|consen 407 GADNKLRIFK 416 (423)
T ss_pred cCcceEEEec
Confidence 5456666654
No 164
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=96.80 E-value=0.022 Score=51.42 Aligned_cols=167 Identities=13% Similarity=0.184 Sum_probs=96.6
Q ss_pred CCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC--CCCcceEEEeCCCCeEEEEEecCC
Q 039428 46 SPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV--GNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 46 ~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~--~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
+....+|+..++|+|+.++.+.-+|-|-+|+--+|+. -+..+.-....+. ......|.+++ +..+.+. ...
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKl----rKDLkYQAqd~fMMmd~aVlci~FSR-DsEMlAs--Gsq 283 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKL----RKDLKYQAQDNFMMMDDAVLCISFSR-DSEMLAS--GSQ 283 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchh----hhhhhhhhhcceeecccceEEEeecc-cHHHhhc--cCc
Confidence 3445799999999999777778899999998544541 1111111111111 12446677774 4444442 222
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~ 202 (335)
. +.|.+|...+|+-....+- . . ......+.|.+|+.-..+.+....+.....+ |+.+. .|..
T Consensus 284 D---GkIKvWri~tG~ClRrFdr--A-H-tkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LK-----EfrG----- 346 (508)
T KOG0275|consen 284 D---GKIKVWRIETGQCLRRFDR--A-H-TKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLK-----EFRG----- 346 (508)
T ss_pred C---CcEEEEEEecchHHHHhhh--h-h-ccCeeEEEEccCcchhhcccccceEEEeccccchhHH-----HhcC-----
Confidence 2 3477777777753321111 0 0 2345568888888766665665555444433 33332 2221
Q ss_pred cccccCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 203 NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
.....|-..+++||+-+++.+.++.|.+.+....
T Consensus 347 HsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt 380 (508)
T KOG0275|consen 347 HSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT 380 (508)
T ss_pred ccccccceEEcCCCCeEEEecCCccEEEecCcch
Confidence 2234788899999977777778888888777664
No 165
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=96.80 E-value=0.017 Score=56.10 Aligned_cols=117 Identities=18% Similarity=0.178 Sum_probs=67.9
Q ss_pred CCcceEEEeCCCCeEEEEEecCC-----------CCccceEEEEECCCC-------eEE-EEeecCC-CccC--------
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVL-----------GNKYSALAAYDLSTW-------KRL-FLTQLSG-KSEE-------- 152 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~-----------~~~~~~v~~~d~~~~-------~~~-~~~~~~~-~~~~-------- 152 (335)
.+|.+|++.+..+++|++..+.. .+...+|++|-+.++ +.. +.....+ ..+.
T Consensus 417 dRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t~~~ftWdlF~~aG~~~~~~~~~~~~~~~ 496 (616)
T COG3211 417 DRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHTDTKFTWDLFVEAGNPSVLEGGASANINA 496 (616)
T ss_pred cCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCccCccceeeeeeecCCccccccccccCccc
Confidence 46899999998899999865433 112367999988765 211 2111111 0011
Q ss_pred --CCCCCceeECCCCcEEEEe-CCC----C---eEE-EEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEE
Q 039428 153 --KSTADDIAVDAEGNAYVTD-VVS----S---KIW-KVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIV 220 (335)
Q Consensus 153 --~~~p~~~~vd~~G~lyV~d-~~~----~---~I~-~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyv 220 (335)
++.|.+++||+.|+|||+. ... + .++ ...++++.-++. ..+..| ......|+||+||+ .|||
T Consensus 497 ~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~--rf~t~P----~g~E~tG~~FspD~~TlFV 570 (616)
T COG3211 497 NWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIK--RFLTGP----IGCEFTGPCFSPDGKTLFV 570 (616)
T ss_pred ccccCCCceEECCCCCEEEEecCCCCccCcccccccccccCCCccceee--eeccCC----CcceeecceeCCCCceEEE
Confidence 5669999999999999963 221 2 122 222333221110 122222 22336799999999 8988
Q ss_pred EEC
Q 039428 221 IHM 223 (335)
Q Consensus 221 ad~ 223 (335)
.-.
T Consensus 571 ~vQ 573 (616)
T COG3211 571 NVQ 573 (616)
T ss_pred Eec
Confidence 743
No 166
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=96.78 E-value=0.25 Score=45.36 Aligned_cols=116 Identities=15% Similarity=0.083 Sum_probs=78.6
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.-.+++++|. +-||++ ..+++|-.||..+|+ +. ++.++.. ....|++++++.--+|.+..| .
T Consensus 153 WVr~vavdP~-n~wf~tgs~DrtikIwDlatg~-----Lk----ltltGhi-~~vr~vavS~rHpYlFs~ged------k 215 (460)
T KOG0285|consen 153 WVRSVAVDPG-NEWFATGSADRTIKIWDLATGQ-----LK----LTLTGHI-ETVRGVAVSKRHPYLFSAGED------K 215 (460)
T ss_pred eEEEEeeCCC-ceeEEecCCCceeEEEEcccCe-----EE----Eeecchh-heeeeeeecccCceEEEecCC------C
Confidence 5689999997 566666 778999999977665 22 2233322 256899998644445443222 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEE
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLL 187 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~ 187 (335)
.|..||++.++++..+.. . .+....+.+.|--.+.++......+.++|...+..
T Consensus 216 ~VKCwDLe~nkvIR~YhG----H-lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~ 269 (460)
T KOG0285|consen 216 QVKCWDLEYNKVIRHYHG----H-LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRAS 269 (460)
T ss_pred eeEEEechhhhhHHHhcc----c-cceeEEEeccccceeEEecCCcceEEEeeecccce
Confidence 699999998877633322 1 45566788888777888877777888888776543
No 167
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.77 E-value=0.36 Score=45.87 Aligned_cols=223 Identities=16% Similarity=0.155 Sum_probs=126.8
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
..++.+..||.++.++-.+|-|.+||. ..+. ++. .+.... ...+-+.+.+.++.+++...|. ..+
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~-k~r~---iLR---~~~ah~---apv~~~~f~~~d~t~l~s~sDd-----~v~ 135 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDM-KSRV---ILR---QLYAHQ---APVHVTKFSPQDNTMLVSGSDD-----KVV 135 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEecc-ccHH---HHH---HHhhcc---CceeEEEecccCCeEEEecCCC-----ceE
Confidence 568889999998888877899999983 2321 111 111111 1346778888777888754443 245
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
..||.++..+ ..++.+. ..+..-.++.|- +.+.||.++.|.|..+|......++. .+.- +.-...
T Consensus 136 k~~d~s~a~v--~~~l~~h---tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~---elnh------g~pVe~ 201 (487)
T KOG0310|consen 136 KYWDLSTAYV--QAELSGH---TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV---ELNH------GCPVES 201 (487)
T ss_pred EEEEcCCcEE--EEEecCC---cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE---EecC------CCceee
Confidence 5677776654 3344332 345555666664 67999999999999999875422211 1110 111567
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEE
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASV 289 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~ 289 (335)
+.+-|.|.++++- +++.|.++|+.++. +.+....++ -....-+.+..++.-.++..=...++|++. +.|+.. .
T Consensus 202 vl~lpsgs~iasA-gGn~vkVWDl~~G~---qll~~~~~H-~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~-t~~Kvv-~ 274 (487)
T KOG0310|consen 202 VLALPSGSLIASA-GGNSVKVWDLTTGG---QLLTSMFNH-NKTVTCLRLASDSTRLLSGSLDRHVKVFDT-TNYKVV-H 274 (487)
T ss_pred EEEcCCCCEEEEc-CCCeEEEEEecCCc---eehhhhhcc-cceEEEEEeecCCceEeecccccceEEEEc-cceEEE-E
Confidence 8888888887664 56678888888542 111110101 123456777666643444332355888874 334321 1
Q ss_pred eeeecCCCCCcceEEEE--eCCeEEE
Q 039428 290 VAKFNGPTHRVATAATV--KDGRVYL 313 (335)
Q Consensus 290 ~~~~~~p~~~~Pt~va~--~~g~lyV 313 (335)
.-.+.+|. -++++ ++.++++
T Consensus 275 s~~~~~pv----Lsiavs~dd~t~vi 296 (487)
T KOG0310|consen 275 SWKYPGPV----LSIAVSPDDQTVVI 296 (487)
T ss_pred eeecccce----eeEEecCCCceEEE
Confidence 12233443 24555 3566666
No 168
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=96.77 E-value=0.36 Score=42.82 Aligned_cols=173 Identities=11% Similarity=0.157 Sum_probs=108.9
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC-eEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW-KRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKV 180 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~ 180 (335)
+...++.+|..|+++++.+ .+ ..|..++..++ .......+.. +. ......++..|.|++..+.+....+..+
T Consensus 16 r~W~~awhp~~g~ilAscg---~D--k~vriw~~~~~~s~~ck~vld~-~h-krsVRsvAwsp~g~~La~aSFD~t~~Iw 88 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCG---TD--KAVRIWSTSSGDSWTCKTVLDD-GH-KRSVRSVAWSPHGRYLASASFDATVVIW 88 (312)
T ss_pred cEEEEEeccCCceEEEeec---CC--ceEEEEecCCCCcEEEEEeccc-cc-hheeeeeeecCCCcEEEEeeccceEEEe
Confidence 5668899984477776432 22 36888887743 2222222221 11 3455679999999988887887777766
Q ss_pred ccC-CcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEE
Q 039428 181 GVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLAL 259 (335)
Q Consensus 181 d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~ 259 (335)
... +.+..+. .+.. .-....+++++++|+++.+-+....|+....+.+. +...+.+-.++ ..-.-.+..
T Consensus 89 ~k~~~efecv~---~lEG-----HEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-Efec~aVL~~H-tqDVK~V~W 158 (312)
T KOG0645|consen 89 KKEDGEFECVA---TLEG-----HENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-EFECIAVLQEH-TQDVKHVIW 158 (312)
T ss_pred ecCCCceeEEe---eeec-----cccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-cEEEEeeeccc-cccccEEEE
Confidence 654 4443321 1111 11236799999999888888888888888877543 44444332223 234678999
Q ss_pred cCCCcEEEEecCCCeEEEEEcC--CCcEEEEEee
Q 039428 260 LSPTKLVVAGNPYPSARLVESS--DGWETASVVA 291 (335)
Q Consensus 260 d~~g~l~va~~~~~~~~v~~~~--~~~~~~~~~~ 291 (335)
.|...|.++....|.+++.+.. ++|.....+.
T Consensus 159 HPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~ 192 (312)
T KOG0645|consen 159 HPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLD 192 (312)
T ss_pred cCCcceeEEeccCCeEEEEeecCCCCeeEEEEec
Confidence 9987777775556889988755 3387655544
No 169
>PRK13684 Ycf48-like protein; Provisional
Probab=96.71 E-value=0.52 Score=43.95 Aligned_cols=189 Identities=12% Similarity=0.046 Sum_probs=96.4
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.....++++..+.+.|++. ..+.|++=.+ .|+. .+. .....+. .......+.++. ++.|++ ...
T Consensus 45 ~~~l~~v~F~d~~~g~avG-~~G~il~T~D-gG~t----W~~-~~~~~~~-~~~~l~~v~~~~--~~~~~~-G~~----- 108 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVG-SNRTLLETND-GGET----WEE-RSLDLPE-ENFRLISISFKG--DEGWIV-GQP----- 108 (334)
T ss_pred CCceEEEEEeCCCcEEEEE-CCCEEEEEcC-CCCC----ceE-CccCCcc-cccceeeeEEcC--CcEEEe-CCC-----
Confidence 3456779998766767666 4678888753 3441 111 0001111 112345677763 446764 221
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
+.|++ ..+.|+.......... . ...+..+....++++|++. ..+.|++-+-.|+.-+.+..+ .....
T Consensus 109 g~i~~-S~DgG~tW~~~~~~~~-~-~~~~~~i~~~~~~~~~~~g-~~G~i~~S~DgG~tW~~~~~~---------~~g~~ 175 (334)
T PRK13684 109 SLLLH-TTDGGKNWTRIPLSEK-L-PGSPYLITALGPGTAEMAT-NVGAIYRTTDGGKNWEALVED---------AAGVV 175 (334)
T ss_pred ceEEE-ECCCCCCCeEccCCcC-C-CCCceEEEEECCCcceeee-ccceEEEECCCCCCceeCcCC---------CcceE
Confidence 23555 3444443222211100 0 1234444444445667664 456788776666543322111 11236
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
+++++++++.+++ -...+.+++-..++++ ..+.+.... -....++++.+++.+|+++.
T Consensus 176 ~~i~~~~~g~~v~-~g~~G~i~~s~~~gg~-tW~~~~~~~---~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 176 RNLRRSPDGKYVA-VSSRGNFYSTWEPGQT-AWTPHQRNS---SRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred EEEEECCCCeEEE-EeCCceEEEEcCCCCC-eEEEeeCCC---cccceeeeEcCCCCEEEEec
Confidence 7888888874443 3356777775323332 344443322 23467899989999998866
No 170
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=96.66 E-value=0.34 Score=44.67 Aligned_cols=161 Identities=14% Similarity=0.208 Sum_probs=98.0
Q ss_pred cceeee-EEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceE-EEeCCCCeEEEEEecCCCCc
Q 039428 49 FLCETA-KWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGI-AVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 49 ~~pegi-a~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi-~~d~~~g~l~v~~~D~~~~~ 126 (335)
.+|..| ++-=+.++++|.. ..+||.+|..+-+ ++.. ....|. .+.|+ ++.+...+-|++..+....
T Consensus 85 ~fpt~IL~VrmNr~RLvV~L-ee~IyIydI~~Mk----lLhT--I~t~~~----n~~gl~AlS~n~~n~ylAyp~s~t~- 152 (391)
T KOG2110|consen 85 FFPTSILAVRMNRKRLVVCL-EESIYIYDIKDMK----LLHT--IETTPP----NPKGLCALSPNNANCYLAYPGSTTS- 152 (391)
T ss_pred ecCCceEEEEEccceEEEEE-cccEEEEecccce----eehh--hhccCC----CccceEeeccCCCCceEEecCCCCC-
Confidence 466444 4444456777774 4459999864333 1221 111211 33433 3333344556654433221
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc--cCCcEEEEecCCccccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG--VEGQLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d--~~g~~~~~~~~~~~~~~~~~~~~ 204 (335)
+.|+.||..+-+....++. . ......++|+++|.+..|-+..|+|.|+= ++|+.+..|+++.. .
T Consensus 153 -GdV~l~d~~nl~~v~~I~a----H-~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~ 218 (391)
T KOG2110|consen 153 -GDVVLFDTINLQPVNTINA----H-KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------P 218 (391)
T ss_pred -ceEEEEEcccceeeeEEEe----c-CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------e
Confidence 4699999877655533332 1 24456799999999999999999887753 56776665544322 1
Q ss_pred cccCeEEEccCCeEEEEECCCCEEEEEeCCC
Q 039428 205 FGLNGIVYHPDGFLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~ 235 (335)
.....|+|++|+..+.+.+.++.|..|.++.
T Consensus 219 ~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 219 VSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 3477899999998777777888888887765
No 171
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=96.66 E-value=0.011 Score=36.66 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=31.8
Q ss_pred cCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc
Q 039428 214 PDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL 260 (335)
Q Consensus 214 ~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d 260 (335)
||+ +||+++...++|..+|+...+ ....+.. | ..|.+|+++
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~-~~~~i~v-g----~~P~~i~~~ 42 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNK-VIATIPV-G----GYPFGVAVS 42 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCe-EEEEEEC-C----CCCceEEeC
Confidence 466 899999999999999997764 5556665 4 248999874
No 172
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=96.64 E-value=0.31 Score=45.95 Aligned_cols=153 Identities=17% Similarity=0.152 Sum_probs=85.7
Q ss_pred EeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEcc-CCcE
Q 039428 108 VDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGV-EGQL 186 (335)
Q Consensus 108 ~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~-~g~~ 186 (335)
++ .++++|+...| ..|+.+|++++..++...... .....++-.+..+|++|+++... .++.+|. +|..
T Consensus 65 ~~-~dg~v~~~~~~------G~i~A~d~~~g~~~W~~~~~~---~~~~~~~~~~~~~G~i~~g~~~g-~~y~ld~~~G~~ 133 (370)
T COG1520 65 AD-GDGTVYVGTRD------GNIFALNPDTGLVKWSYPLLG---AVAQLSGPILGSDGKIYVGSWDG-KLYALDASTGTL 133 (370)
T ss_pred Ee-eCCeEEEecCC------CcEEEEeCCCCcEEecccCcC---cceeccCceEEeCCeEEEecccc-eEEEEECCCCcE
Confidence 44 37999995332 259999999998776554422 12344444455599999987654 8999999 6776
Q ss_pred EEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEE
Q 039428 187 LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLV 266 (335)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~ 266 (335)
........ . .. -.+-++-.++.+|+.. .++.++.++.+.++ ....+............... ..++.+|
T Consensus 134 ~W~~~~~~-~-------~~-~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~-~~W~~~~~~~~~~~~~~~~~-~~~~~vy 201 (370)
T COG1520 134 VWSRNVGG-S-------PY-YASPPVVGDGTVYVGT-DDGHLYALNADTGT-LKWTYETPAPLSLSIYGSPA-IASGTVY 201 (370)
T ss_pred EEEEecCC-C-------eE-EecCcEEcCcEEEEec-CCCeEEEEEccCCc-EEEEEecCCccccccccCce-eecceEE
Confidence 55322111 0 01 1122344477888776 67889999988663 22222221100011122222 4567788
Q ss_pred EEecC-CCeEEEEEcCCC
Q 039428 267 VAGNP-YPSARLVESSDG 283 (335)
Q Consensus 267 va~~~-~~~~~v~~~~~~ 283 (335)
+.... ...+.-++..+|
T Consensus 202 ~~~~~~~~~~~a~~~~~G 219 (370)
T COG1520 202 VGSDGYDGILYALNAEDG 219 (370)
T ss_pred EecCCCcceEEEEEccCC
Confidence 87441 123444555444
No 173
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=96.64 E-value=0.22 Score=47.13 Aligned_cols=165 Identities=18% Similarity=0.159 Sum_probs=100.9
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeee------eEEeecCCcCCCCcceEEEeCC--CCeEEEEEecCC
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEE------VKLVKEDDVVGNATMGIAVDRP--RNRLLVAFTDVL 123 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~------~~~~~~~~~~~~~p~Gi~~d~~--~g~l~v~~~D~~ 123 (335)
..+.+..+|.+++.+..++.|..|+.- .- +.. .++..+.+.. -....+.++.. +.+||-++.|
T Consensus 127 TcL~fs~dgs~iiTgskDg~V~vW~l~-~l-----v~a~~~~~~~p~~~f~~Ht-lsITDl~ig~Gg~~~rl~TaS~D-- 197 (476)
T KOG0646|consen 127 TCLKFSDDGSHIITGSKDGAVLVWLLT-DL-----VSADNDHSVKPLHIFSDHT-LSITDLQIGSGGTNARLYTASED-- 197 (476)
T ss_pred eEEEEeCCCcEEEecCCCccEEEEEEE-ee-----cccccCCCccceeeeccCc-ceeEEEEecCCCccceEEEecCC--
Confidence 577888888888888888988888631 11 000 0010111100 12355555532 4577776554
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE--EE-EecCCcccc---
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL--LS-IIRSPLFTA--- 197 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~--~~-~~~~~~~~~--- 197 (335)
..+..||...+.++..+.+ ...++.+++||.++..+..+..|.|+.++..+.. .. +.. ..+..
T Consensus 198 ----~t~k~wdlS~g~LLlti~f------p~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~-k~~~~~~t 266 (476)
T KOG0646|consen 198 ----RTIKLWDLSLGVLLLTITF------PSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQ-KGRHEENT 266 (476)
T ss_pred ----ceEEEEEeccceeeEEEec------CCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccc-cccccccc
Confidence 3688999999988765555 3457789999987644445677899988754321 00 000 00000
Q ss_pred --ccccc--cccccCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 198 --KEWYK--NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 198 --~~~~~--~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
+...+ .......++++-||+|.++-..+|+|-+.|+.+.
T Consensus 267 ~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 267 QINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK 309 (476)
T ss_pred eeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH
Confidence 00011 1124678999999999999999999999999875
No 174
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=96.54 E-value=0.59 Score=47.42 Aligned_cols=159 Identities=13% Similarity=0.136 Sum_probs=104.5
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d 181 (335)
....++++. =|++-+. +-.. +.|-+|+..+|-...... ..+.. .....|+++|.-+++.|+....|-+.-+|
T Consensus 450 ~~~av~vs~-CGNF~~I-G~S~----G~Id~fNmQSGi~r~sf~-~~~ah-~~~V~gla~D~~n~~~vsa~~~Gilkfw~ 521 (910)
T KOG1539|consen 450 NATAVCVSF-CGNFVFI-GYSK----GTIDRFNMQSGIHRKSFG-DSPAH-KGEVTGLAVDGTNRLLVSAGADGILKFWD 521 (910)
T ss_pred ceEEEEEec-cCceEEE-eccC----CeEEEEEcccCeeecccc-cCccc-cCceeEEEecCCCceEEEccCcceEEEEe
Confidence 567788886 4444332 2222 349999999986552221 11111 35568999999999999988888888888
Q ss_pred cCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC
Q 039428 182 VEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS 261 (335)
Q Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~ 261 (335)
-+.+... ++ .. -...+.+|......-+++...+.=+|..+|....+ .++.+...+ +.-..+++.+
T Consensus 522 f~~k~l~--~~--l~------l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~k-vvR~f~gh~----nritd~~FS~ 586 (910)
T KOG1539|consen 522 FKKKVLK--KS--LR------LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRK-VVREFWGHG----NRITDMTFSP 586 (910)
T ss_pred cCCccee--ee--ec------cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhh-hhHHhhccc----cceeeeEeCC
Confidence 7766532 11 11 12347788887766666666677789999988764 444443223 3367899999
Q ss_pred CCcEEEEecCCCeEEEEEcCCC
Q 039428 262 PTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 262 ~g~l~va~~~~~~~~v~~~~~~ 283 (335)
||++.++......+++.+...+
T Consensus 587 DgrWlisasmD~tIr~wDlpt~ 608 (910)
T KOG1539|consen 587 DGRWLISASMDSTIRTWDLPTG 608 (910)
T ss_pred CCcEEEEeecCCcEEEEeccCc
Confidence 9997777665577999887754
No 175
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.54 E-value=0.6 Score=46.21 Aligned_cols=192 Identities=16% Similarity=0.139 Sum_probs=111.4
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
..-|+++|.+. .++|....+|.|.+||..+++ . ... -...++....|++.+.+..+-|. +|. +
T Consensus 70 rsIE~L~W~e~-~RLFS~g~sg~i~EwDl~~lk-------~--~~~-~d~~gg~IWsiai~p~~~~l~Ig-cdd-----G 132 (691)
T KOG2048|consen 70 RSIESLAWAEG-GRLFSSGLSGSITEWDLHTLK-------Q--KYN-IDSNGGAIWSIAINPENTILAIG-CDD-----G 132 (691)
T ss_pred CceeeEEEccC-CeEEeecCCceEEEEecccCc-------e--eEE-ecCCCcceeEEEeCCccceEEee-cCC-----c
Confidence 35699999954 556666679999999975444 1 111 11123466889999866666664 343 2
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCC--cccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSP--LFTAKEWYKNVF 205 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~--~~~~~~~~~~~~ 205 (335)
.++-++...+++.+...+.- + ..+.-.++.+++|.-.++.+..+.|..+|.... .......+ ..... ...
T Consensus 133 vl~~~s~~p~~I~~~r~l~r--q-~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~----~~~ 205 (691)
T KOG2048|consen 133 VLYDFSIGPDKITYKRSLMR--Q-KSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKR----EPT 205 (691)
T ss_pred eEEEEecCCceEEEEeeccc--c-cceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccC----Cce
Confidence 36666666677765555532 1 467778999999986778888899999997643 32211110 11110 011
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEec
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGN 270 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~ 270 (335)
-.-++.+-.|+.|.-.| ..|.|.-.|...+. ..+.+.... +-.-.|++++++ .+++++.
T Consensus 206 iVWSv~~Lrd~tI~sgD-S~G~V~FWd~~~gT-LiqS~~~h~----adVl~Lav~~~~d~vfsaGv 265 (691)
T KOG2048|consen 206 IVWSVLFLRDSTIASGD-SAGTVTFWDSIFGT-LIQSHSCHD----ADVLALAVADNEDRVFSAGV 265 (691)
T ss_pred EEEEEEEeecCcEEEec-CCceEEEEcccCcc-hhhhhhhhh----cceeEEEEcCCCCeEEEccC
Confidence 13445555566655554 46677777766542 222222211 224567777775 4555544
No 176
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=96.51 E-value=0.036 Score=53.79 Aligned_cols=142 Identities=18% Similarity=0.174 Sum_probs=85.6
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEcc
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGV 182 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~ 182 (335)
...+.+|. +|++||++.| .+.+||..+++.......+. -...+.+..|..|++||... ..|++.++
T Consensus 167 V~aLv~D~-~g~lWvgT~d-------GL~~fd~~~gkalql~s~~~----dk~I~al~~d~qg~LWVGTd--qGv~~~e~ 232 (671)
T COG3292 167 VVALVFDA-NGRLWVGTPD-------GLSYFDAGRGKALQLASPPL----DKAINALIADVQGRLWVGTD--QGVYLQEA 232 (671)
T ss_pred ceeeeeec-cCcEEEecCC-------cceEEccccceEEEcCCCcc----hhhHHHHHHHhcCcEEEEec--cceEEEch
Confidence 47788885 8999996432 49999998887764322210 13456788889999999743 46888988
Q ss_pred CCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCC
Q 039428 183 EGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSP 262 (335)
Q Consensus 183 ~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~ 262 (335)
.|....-.+. .+. ....+-+.-|.+|++|+..... ++|.....+ .++.-...-........++..|.+
T Consensus 233 ~G~~~sn~~~-~lp-------~~~I~ll~qD~qG~lWiGTenG--l~r~~l~rq--~Lq~~~~~~~l~~S~vnsL~~D~d 300 (671)
T COG3292 233 EGWRASNWGP-MLP-------SGNILLLVQDAQGELWIGTENG--LWRTRLPRQ--GLQIPLSKMHLGVSTVNSLWLDTD 300 (671)
T ss_pred hhccccccCC-CCc-------chheeeeecccCCCEEEeeccc--ceeEecCCC--CccccccccCCccccccceeeccC
Confidence 8844332211 111 1124555566678999986443 343333333 111111110011344578899999
Q ss_pred CcEEEEec
Q 039428 263 TKLVVAGN 270 (335)
Q Consensus 263 g~l~va~~ 270 (335)
|.||+..+
T Consensus 301 GsLWv~t~ 308 (671)
T COG3292 301 GSLWVGTY 308 (671)
T ss_pred CCEeeecc
Confidence 99999966
No 177
>PHA03098 kelch-like protein; Provisional
Probab=96.50 E-value=0.75 Score=45.67 Aligned_cols=197 Identities=12% Similarity=0.038 Sum_probs=98.8
Q ss_pred CCCEEEEEecC------CeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 59 VGRRFLVSFLD------GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 59 ~g~~~~~~~~~------~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
++.+|+++... ..++++|+.+.. |...+.+.. ..-.+++.- ++.||+..+-......+.+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~----------W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~ 361 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKS----------WNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVE 361 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCe----------eeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEE
Confidence 45566666221 368899854332 433343321 223455554 68899974322111124688
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC------CCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV------SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~------~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
+||+.+++-....+.+.+ ... ..++--+|++||.... ...++++|+....-.... .+ | ...
T Consensus 362 ~yd~~~~~W~~~~~lp~~---r~~--~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~--~~--p----~~r 428 (534)
T PHA03098 362 SWKPGESKWREEPPLIFP---RYN--PCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS--PL--P----ISH 428 (534)
T ss_pred EEcCCCCceeeCCCcCcC---Ccc--ceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC--CC--C----ccc
Confidence 999988755433222111 111 1222246789997542 257899998754332111 11 1 011
Q ss_pred ccCeEEEccCCeEEEEECC--------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC-----C
Q 039428 206 GLNGIVYHPDGFLIVIHMC--------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP-----Y 272 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~--------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~-----~ 272 (335)
.-.+.+. -++.||+.... ...++++|+..+ ....+.... ..-. -.+++. -++++||.+.. .
T Consensus 429 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~--~W~~~~~~~-~~r~-~~~~~~-~~~~iyv~GG~~~~~~~ 502 (534)
T PHA03098 429 YGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTN--KWTELSSLN-FPRI-NASLCI-FNNKIYVVGGDKYEYYI 502 (534)
T ss_pred cCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCC--ceeeCCCCC-cccc-cceEEE-ECCEEEEEcCCcCCccc
Confidence 1223333 36789886532 134899999887 444443111 0001 123333 36789998542 2
Q ss_pred CeEEEEEcCCC-cEE
Q 039428 273 PSARLVESSDG-WET 286 (335)
Q Consensus 273 ~~~~v~~~~~~-~~~ 286 (335)
+.+.+++...+ |..
T Consensus 503 ~~v~~yd~~~~~W~~ 517 (534)
T PHA03098 503 NEIEVYDDKTNTWTL 517 (534)
T ss_pred ceeEEEeCCCCEEEe
Confidence 34566665544 643
No 178
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=96.50 E-value=0.57 Score=45.00 Aligned_cols=178 Identities=14% Similarity=0.180 Sum_probs=100.8
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.+.-++-.. +. +++....+.|.+-... ..+ .. .....+ ....|++..| ...+|++.+. + ..
T Consensus 331 ~iRtv~e~~-~d-i~vGTtrN~iL~Gt~~-~~f-----~~--~v~gh~---delwgla~hp-s~~q~~T~gq---d--k~ 391 (626)
T KOG2106|consen 331 PIRTVAEGK-GD-ILVGTTRNFILQGTLE-NGF-----TL--TVQGHG---DELWGLATHP-SKNQLLTCGQ---D--KH 391 (626)
T ss_pred CeeEEecCC-Cc-EEEeeccceEEEeeec-CCc-----eE--EEEecc---cceeeEEcCC-ChhheeeccC---c--ce
Confidence 344444332 33 6666556777777643 332 10 111111 2456999998 5666664321 2 24
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
+..|+ ..++++...+..+. .-+.|+|.| .....+..|+..++|.+.+....+... . ...+-
T Consensus 392 v~lW~--~~k~~wt~~~~d~~------~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d--~--------~~ls~ 452 (626)
T KOG2106|consen 392 VRLWN--DHKLEWTKIIEDPA------ECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD--N--------EQLSV 452 (626)
T ss_pred EEEcc--CCceeEEEEecCce------eEeeccCcc-eEEEeeccceEEEEecccceeEEEEec--C--------CceEE
Confidence 77777 56677665553332 347788888 666678888999998876554433221 1 12678
Q ss_pred EEEccCCeEEEEECCCCEE--EEEeCCCCceeEEEEe-ccCCcCCCCCCeEEEcCCCcEEEEecC
Q 039428 210 IVYHPDGFLIVIHMCSGNL--FKIDIRKEEEEVKLIE-LRGGSSLSLGDGLALLSPTKLVVAGNP 271 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v--~~~d~~~~~~~~~~~~-~~g~~~~~~pdGia~d~~g~l~va~~~ 271 (335)
+.++|||..+.--+.++.| ||++.++. ....+. ..| ..-.-+.+.+|++.++++.+
T Consensus 453 v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~--~y~r~~k~~g----s~ithLDwS~Ds~~~~~~S~ 511 (626)
T KOG2106|consen 453 VRYSPDGAFLAVGSHDNHIYIYRVSANGR--KYSRVGKCSG----SPITHLDWSSDSQFLVSNSG 511 (626)
T ss_pred EEEcCCCCEEEEecCCCeEEEEEECCCCc--EEEEeeeecC----ceeEEeeecCCCceEEeccC
Confidence 9999999555444556654 55555554 222222 122 22355666777787777663
No 179
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.49 E-value=0.56 Score=45.21 Aligned_cols=159 Identities=18% Similarity=0.197 Sum_probs=89.9
Q ss_pred CcceeeeEEcCCCCE-EEEEecC---CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 48 SFLCETAKWDDVGRR-FLVSFLD---GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 48 ~~~pegia~d~~g~~-~~~~~~~---~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
......++|.+++.. .|++... .+|++++...+.. + .....++. -....+.|++..|..+ .+..
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-----~--~i~~~~g~----~~~P~fspDG~~l~f~-~~rd 259 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-----P--VILNFNGN----NGAPAFSPDGSKLAFS-SSRD 259 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-----c--eeeccCCc----cCCccCCCCCCEEEEE-ECCC
Confidence 445678899999874 4444332 3599998765552 1 13333332 2344566644444443 3332
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc--EEEEeCC-CCeEEEEccCCcEEEEecCCccccccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN--AYVTDVV-SSKIWKVGVEGQLLSIIRSPLFTAKEW 200 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~--lyV~d~~-~~~I~~~d~~g~~~~~~~~~~~~~~~~ 200 (335)
+. ..|+.+|..++.+....+.. ..-..-.+.|||+ +|++|.. ...|++.+++|+..+.+. +.
T Consensus 260 g~--~~iy~~dl~~~~~~~Lt~~~------gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT---~~---- 324 (425)
T COG0823 260 GS--PDIYLMDLDGKNLPRLTNGF------GINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLT---FS---- 324 (425)
T ss_pred CC--ccEEEEcCCCCcceecccCC------ccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEee---cc----
Confidence 32 46999999988744322221 1112455678986 5556643 569999999988655321 11
Q ss_pred cccccccCeEEEccCC-eEEEEECCCCE--EEEEeCCCC
Q 039428 201 YKNVFGLNGIVYHPDG-FLIVIHMCSGN--LFKIDIRKE 236 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg-~Lyvad~~~~~--v~~~d~~~~ 236 (335)
..+...-.++||| ++.+.....++ |...++..+
T Consensus 325 ---~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~ 360 (425)
T COG0823 325 ---GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASG 360 (425)
T ss_pred ---CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCC
Confidence 1123355789999 55444443455 666676665
No 180
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.41 E-value=0.22 Score=46.58 Aligned_cols=196 Identities=14% Similarity=0.091 Sum_probs=117.9
Q ss_pred eeeeEEcCCCCEEEEEecC--CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 51 CETAKWDDVGRRFLVSFLD--GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~--~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
-+=+.++++|..+..+..+ ..|+.+. .++++ ++.. +..... ....-|..+|++..|..|..| .
T Consensus 227 VWfl~FS~nGkyLAsaSkD~Taiiw~v~-~d~~~--kl~~--tlvgh~----~~V~yi~wSPDdryLlaCg~~------e 291 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASASKDSTAIIWIVV-YDVHF--KLKK--TLVGHS----QPVSYIMWSPDDRYLLACGFD------E 291 (519)
T ss_pred EEEEEEcCCCeeEeeccCCceEEEEEEe-cCcce--eeee--eeeccc----CceEEEEECCCCCeEEecCch------H
Confidence 4567788888654444443 3466775 45552 1111 122111 245678889855555554332 2
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
.+..+|..+|.......- +. ...+...+--|||.-+|+.+....|+.+|.||+....++... .....
T Consensus 292 ~~~lwDv~tgd~~~~y~~---~~-~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr---------~~~v~ 358 (519)
T KOG0293|consen 292 VLSLWDVDTGDLRHLYPS---GL-GFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR---------DPKVH 358 (519)
T ss_pred heeeccCCcchhhhhccc---Cc-CCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc---------cceeE
Confidence 388899999876633221 11 245556777899988999999999999999998765443211 12367
Q ss_pred eEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 209 GIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 209 Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.+++++|| +++... ...+|..++..... ....+... ..-.-+.+..+|++.+.+-..+.+...+..
T Consensus 359 dlait~Dgk~vl~v~-~d~~i~l~~~e~~~-dr~lise~-----~~its~~iS~d~k~~LvnL~~qei~LWDl~ 425 (519)
T KOG0293|consen 359 DLAITYDGKYVLLVT-VDKKIRLYNREARV-DRGLISEE-----QPITSFSISKDGKLALVNLQDQEIHLWDLE 425 (519)
T ss_pred EEEEcCCCcEEEEEe-cccceeeechhhhh-hhcccccc-----CceeEEEEcCCCcEEEEEcccCeeEEeecc
Confidence 89999999 666554 45556666655431 11123211 224567888888888886544566666654
No 181
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=96.37 E-value=0.17 Score=43.23 Aligned_cols=118 Identities=20% Similarity=0.268 Sum_probs=74.0
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEE-eCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVT-DVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~-d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.|+.++....... .+.+.. .....+++..|+|+ +.|. ......|..+|.+++.+..++. ..
T Consensus 40 ~l~~~~~~~~~~~-~i~l~~----~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~------------~~ 102 (194)
T PF08662_consen 40 ELFYLNEKNIPVE-SIELKK----EGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGT------------QP 102 (194)
T ss_pred EEEEEecCCCccc-eeeccC----CCceEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecC------------CC
Confidence 4777765543322 222211 12367899999996 3333 3445688899988766553321 23
Q ss_pred cCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 207 LNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 207 p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.|.|.++|+| .|.++..+ +|.|..+|.+..+ .+.... . .....++.+|+|+.+++..
T Consensus 103 ~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~-~i~~~~----~--~~~t~~~WsPdGr~~~ta~ 162 (194)
T PF08662_consen 103 RNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK-KISTFE----H--SDATDVEWSPDGRYLATAT 162 (194)
T ss_pred ceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE-Eeeccc----c--CcEEEEEEcCCCCEEEEEE
Confidence 6889999999 56666544 5789999988652 222222 1 2357899999999777743
No 182
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.36 E-value=1.2 Score=44.17 Aligned_cols=111 Identities=14% Similarity=0.092 Sum_probs=62.4
Q ss_pred CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC---------CCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 61 RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG---------NATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 61 ~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~---------~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
+++|+....+.|+.+|..+|+. + |........ ....|+++. ++++|+.+.| ..|+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~----l----W~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~d------g~l~ 133 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKE----L----WKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTLD------ARLV 133 (527)
T ss_pred CEEEEECCCCcEEEEECCCCce----e----eEecCCCCcccccccccccccccceEE--CCEEEEEcCC------CEEE
Confidence 4556665567899999766651 1 321111100 012466776 5889995433 3599
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC-----CCCeEEEEccC-CcEEE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-----VSSKIWKVGVE-GQLLS 188 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-----~~~~I~~~d~~-g~~~~ 188 (335)
.+|.++|++.+..................+ .+|.+||..+ ..+.|+.+|.+ |+.+.
T Consensus 134 ALDa~TGk~~W~~~~~~~~~~~~~tssP~v-~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW 195 (527)
T TIGR03075 134 ALDAKTGKVVWSKKNGDYKAGYTITAAPLV-VKGKVITGISGGEFGVRGYVTAYDAKTGKLVW 195 (527)
T ss_pred EEECCCCCEEeecccccccccccccCCcEE-ECCEEEEeecccccCCCcEEEEEECCCCceeE
Confidence 999999999876554221110011111222 1567888643 25789999986 44443
No 183
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.30 E-value=0.83 Score=41.47 Aligned_cols=196 Identities=12% Similarity=0.146 Sum_probs=116.8
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
.+++.+.+-|.++.++..+|+|..+|.. +..+ . ++++..- .....++.++ +|+..++.. . + ..+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~-T~~i----a--r~lsaH~---~pi~sl~WS~-dgr~LltsS-~--D--~si 89 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFD-TFRI----A--RMLSAHV---RPITSLCWSR-DGRKLLTSS-R--D--WSI 89 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcc-ccch----h--hhhhccc---cceeEEEecC-CCCEeeeec-C--C--cee
Confidence 7899999999998888889999999853 3311 1 1222211 2347889986 777777532 1 1 459
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCC--CeEEEEccCCcEEEEecCCccccccccccc-cc
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVS--SKIWKVGVEGQLLSIIRSPLFTAKEWYKNV-FG 206 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~--~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~-~~ 206 (335)
..||...|.....+.++. ..++....|. .|..|+.... ..+..++. ++ ..++.. .++ .+. ..
T Consensus 90 ~lwDl~~gs~l~rirf~s------pv~~~q~hp~k~n~~va~~~~~sp~vi~~s~-~~-h~~Lp~----d~d--~dln~s 155 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIRFDS------PVWGAQWHPRKRNKCVATIMEESPVVIDFSD-PK-HSVLPK----DDD--GDLNSS 155 (405)
T ss_pred EEEeccCCCceeEEEccC------ccceeeeccccCCeEEEEEecCCcEEEEecC-Cc-eeeccC----CCc--cccccc
Confidence 999998887665555532 2345666664 5666665443 33334433 22 222211 000 001 12
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
+....+++.|..+++-+..|++..++..+.+ .+..+.+.. ....--+.+...|+.++.|....-+|++..
T Consensus 156 as~~~fdr~g~yIitGtsKGkllv~~a~t~e-~vas~rits---~~~IK~I~~s~~g~~liiNtsDRvIR~ye~ 225 (405)
T KOG1273|consen 156 ASHGVFDRRGKYIITGTSKGKLLVYDAETLE-CVASFRITS---VQAIKQIIVSRKGRFLIINTSDRVIRTYEI 225 (405)
T ss_pred cccccccCCCCEEEEecCcceEEEEecchhe-eeeeeeech---heeeeEEEEeccCcEEEEecCCceEEEEeh
Confidence 3334789999666677789999999998763 333443321 122456778778887777664344565554
No 184
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=96.27 E-value=0.013 Score=36.40 Aligned_cols=33 Identities=9% Similarity=-0.139 Sum_probs=29.2
Q ss_pred ccccCeEEEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
...|+||++++.+ .||.+|...+.|.+.+.++.
T Consensus 8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 3459999999977 99999999999999998874
No 185
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.26 E-value=0.63 Score=46.67 Aligned_cols=187 Identities=14% Similarity=0.103 Sum_probs=106.7
Q ss_pred eeeEEcCCCCEEEEEecC------CeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCC
Q 039428 52 ETAKWDDVGRRFLVSFLD------GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLG 124 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~------~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~ 124 (335)
.++++- +|.+|+++..+ .++.++|+. .. +|...+.+.- +.-.|+++- +|.|||+.+-.+.
T Consensus 326 ~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~-~~---------~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~ 392 (571)
T KOG4441|consen 326 VGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPR-TN---------QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGE 392 (571)
T ss_pred ccEEEE-CCEEEEEccccCCCcccceEEEecCC-CC---------ceeccCCccCccccceeEEE--CCEEEEEeccccc
Confidence 455554 45677777333 578999864 43 1655454432 344677776 7999997432221
Q ss_pred CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC------CCeEEEEccCCcEEEEecCCccccc
Q 039428 125 NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV------SSKIWKVGVEGQLLSIIRSPLFTAK 198 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~------~~~I~~~d~~g~~~~~~~~~~~~~~ 198 (335)
.....+-+||+.+.+-....+... ...-.+++ --+|.+|+.... -..+.++||..+.-+.+ +.+.
T Consensus 393 ~~l~svE~YDp~~~~W~~va~m~~----~r~~~gv~-~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~--~~M~-- 463 (571)
T KOG4441|consen 393 KSLNSVECYDPVTNKWTPVAPMLT----RRSGHGVA-VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLI--APMN-- 463 (571)
T ss_pred cccccEEEecCCCCcccccCCCCc----ceeeeEEE-EECCEEEEEcCcCCCccccceEEEEcCCCCceeec--CCcc--
Confidence 122468899999876543332211 01111222 247899998642 26788999986654321 1111
Q ss_pred cccccccccCeEEEccCCeEEEEECCC-----CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 199 EWYKNVFGLNGIVYHPDGFLIVIHMCS-----GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg~Lyvad~~~-----~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
....-.|++.- ++.||+.-..+ .+|.++|+... ....+..-. . -...-|++.. ++.+|+.+.
T Consensus 464 ----~~R~~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~--~W~~v~~m~-~-~rs~~g~~~~-~~~ly~vGG 530 (571)
T KOG4441|consen 464 ----TRRSGFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETN--QWTMVAPMT-S-PRSAVGVVVL-GGKLYAVGG 530 (571)
T ss_pred ----cccccceEEEE-CCEEEEECCccCCCccceEEEEcCCCC--ceeEcccCc-c-ccccccEEEE-CCEEEEEec
Confidence 12234566766 88999875543 35899999987 555553111 1 1224466665 478898843
No 186
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.22 E-value=0.23 Score=45.10 Aligned_cols=198 Identities=13% Similarity=0.114 Sum_probs=116.8
Q ss_pred cCCCCEEEEEecCCeEEEEECCCCCCCcceeee-eEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEE
Q 039428 57 DDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEE-VKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYD 134 (335)
Q Consensus 57 d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~-~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d 134 (335)
.|+.++|.++..+.-|+.||.-+|+ +.. .+... ..+. ...+.+.++++...||+ +.. ..|.+||
T Consensus 120 qP~t~l~a~ssr~~PIh~wdaftG~-----lraSy~~ydh~de~--taAhsL~Fs~DGeqlfa--Gyk-----rcirvFd 185 (406)
T KOG2919|consen 120 QPSTNLFAVSSRDQPIHLWDAFTGK-----LRASYRAYDHQDEY--TAAHSLQFSPDGEQLFA--GYK-----RCIRVFD 185 (406)
T ss_pred CCccceeeeccccCceeeeeccccc-----cccchhhhhhHHhh--hhheeEEecCCCCeEee--ccc-----ceEEEee
Confidence 6788888888888899999976665 110 00010 0122 25688999986666777 332 5799999
Q ss_pred C-CCCeEEEEee-c-C-CCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCc-EEEEecCCccccccccccccccC
Q 039428 135 L-STWKRLFLTQ-L-S-GKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 135 ~-~~~~~~~~~~-~-~-~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
. +.|.-..... + . ..++ .....-+++.|-. ..+...++..++-.+.-++. ...+++ +...+..
T Consensus 186 t~RpGr~c~vy~t~~~~k~gq-~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg----------gh~gGvT 254 (406)
T KOG2919|consen 186 TSRPGRDCPVYTTVTKGKFGQ-KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG----------GHGGGVT 254 (406)
T ss_pred ccCCCCCCcchhhhhcccccc-cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec----------ccCCCee
Confidence 8 4553221111 1 0 1111 2344557777754 46666677666655555543 222221 1334678
Q ss_pred eEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeE--EEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 209 GIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGL--ALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 209 Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGi--a~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
-+.+.+|| +||+......+|...|+..-+ --++.+.+ .--..-.-| .+|+.|++.+++..++.|+|.+..+
T Consensus 255 hL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~pv~~L~r-hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 255 HLQWCEDGNKLFSGARKDDKILCWDIRYSR--DPVYALER-HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred eEEeccCcCeecccccCCCeEEEEeehhcc--chhhhhhh-hccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 89999999 899998889999999998642 11222211 100011234 4457789888865567788888754
No 187
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.21 E-value=1.2 Score=42.52 Aligned_cols=209 Identities=19% Similarity=0.167 Sum_probs=103.4
Q ss_pred cceeeeEEcCCCCEEEEEecC------CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecC
Q 039428 49 FLCETAKWDDVGRRFLVSFLD------GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDV 122 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~------~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~ 122 (335)
..|..+-.-|+|++++..+.+ +.+..+|. ++- ++.. .|-...+ .......+-+.+ +.++.|++ ..
T Consensus 130 s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~-~tf---~v~g--~We~~~~-~~~~gYDfw~qp-r~nvMiSS-eW 200 (461)
T PF05694_consen 130 SRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDG-ETF---EVKG--RWEKDRG-PQPFGYDFWYQP-RHNVMISS-EW 200 (461)
T ss_dssp EEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-T-TT-----EEE--E--SB-T-T------EEEET-TTTEEEE--B-
T ss_pred CCCceeeecCCccEEEEeccCCCCCCCCcEEEEcC-ccc---cccc--eeccCCC-CCCCCCCeEEcC-CCCEEEEe-cc
Confidence 468888889999988887422 57999973 332 1222 2421111 101235666777 56676754 22
Q ss_pred CC-----------C-----ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeEC--CCC-cEEEEeCCCCeEEEEcc-
Q 039428 123 LG-----------N-----KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVD--AEG-NAYVTDVVSSKIWKVGV- 182 (335)
Q Consensus 123 ~~-----------~-----~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd--~~G-~lyV~d~~~~~I~~~d~- 182 (335)
.. + =.+.|..||.++++++..+++... ...|-.+.+. |+- .-||.-..+..||+|-.
T Consensus 201 g~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~---g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~ 277 (461)
T PF05694_consen 201 GAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE---GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKD 277 (461)
T ss_dssp --HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT---EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-
T ss_pred CChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC---CCceEEEEecCCCCccceEEEEeccceEEEEEEc
Confidence 20 0 025799999999999988888432 2355566664 443 47888778899999876
Q ss_pred -CCcE--EEEecCC------ccccccc----cccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCce--eEEEEecc
Q 039428 183 -EGQL--LSIIRSP------LFTAKEW----YKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEE--EVKLIELR 246 (335)
Q Consensus 183 -~g~~--~~~~~~~------~~~~~~~----~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~--~~~~~~~~ 246 (335)
+|+. ..++.-+ +.. |.. .....-+.-|-++.|. +|||++...|.|..+|+..... .+..+.+.
T Consensus 278 ~~g~W~a~kVi~ip~~~v~~~~l-p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lG 356 (461)
T PF05694_consen 278 DDGEWAAEKVIDIPAKKVEGWIL-PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLG 356 (461)
T ss_dssp ETTEEEEEEEEEE--EE--SS----GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-B
T ss_pred CCCCeeeeEEEECCCcccCcccc-cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEEC
Confidence 3432 1222111 110 000 0001236788899888 9999999999999999988531 23333333
Q ss_pred CC------------cCCCCCCeEEEcCCC-cEEEEec
Q 039428 247 GG------------SSLSLGDGLALLSPT-KLVVAGN 270 (335)
Q Consensus 247 g~------------~~~~~pdGia~d~~g-~l~va~~ 270 (335)
|. ..-++|.=+.+.-|| +|||+++
T Consensus 357 G~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 357 GSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp TTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred cEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 21 112457778888888 7999965
No 188
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.15 E-value=1.9 Score=44.29 Aligned_cols=199 Identities=17% Similarity=0.246 Sum_probs=116.9
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCC-CCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDE-YSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g-~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
-..++|+++|+.++++..++.|.+|+.... ..| ..+.. .+....+++.. .+++.+++.+ +.
T Consensus 16 ~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P-------~ti~~---~g~~v~~ia~~--s~~f~~~s~~------~t 77 (933)
T KOG1274|consen 16 LTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEP-------ETIDI---SGELVSSIACY--SNHFLTGSEQ------NT 77 (933)
T ss_pred eEEEEEcCCCCEEEEecCCCceEEeecCCcccCC-------chhhc---cCceeEEEeec--ccceEEeecc------ce
Confidence 468999999997777778899999974322 111 01110 12245677776 3555554322 35
Q ss_pred EEEEECCCCeEE-EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCcccccccccccccc
Q 039428 130 LAAYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 130 v~~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
|.+|....++.- ....+. ...++++|+.+|+..++.+..-.|-.++.+. .....+.. .. ...
T Consensus 78 v~~y~fps~~~~~iL~Rft------lp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg--h~--------apV 141 (933)
T KOG1274|consen 78 VLRYKFPSGEEDTILARFT------LPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG--HD--------APV 141 (933)
T ss_pred EEEeeCCCCCccceeeeee------ccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc--cC--------Cce
Confidence 777776655432 122221 2236899999999888877777787777653 23222211 11 125
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEe-ccC--CcCCCC-CCeEEEcCC-CcEEEEecCCCeEEEEEcCC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIE-LRG--GSSLSL-GDGLALLSP-TKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~-~~g--~~~~~~-pdGia~d~~-g~l~va~~~~~~~~v~~~~~ 282 (335)
-++.++|.+.+.+..+.+|+|+.+++..+. ....+. +.. +..... -.=+++.|+ |++.+... .+.+.+++- .
T Consensus 142 l~l~~~p~~~fLAvss~dG~v~iw~~~~~~-~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~-d~~Vkvy~r-~ 218 (933)
T KOG1274|consen 142 LQLSYDPKGNFLAVSSCDGKVQIWDLQDGI-LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV-DNTVKVYSR-K 218 (933)
T ss_pred eeeeEcCCCCEEEEEecCceEEEEEcccch-hhhhcccCCccccccccceeeeeeecCCCCeEEeecc-CCeEEEEcc-C
Confidence 789999999888777889999999998862 111111 000 010011 134677888 46666544 256776653 5
Q ss_pred CcEE
Q 039428 283 GWET 286 (335)
Q Consensus 283 ~~~~ 286 (335)
+|..
T Consensus 219 ~we~ 222 (933)
T KOG1274|consen 219 GWEL 222 (933)
T ss_pred Ccee
Confidence 5654
No 189
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=96.14 E-value=0.07 Score=49.60 Aligned_cols=186 Identities=13% Similarity=0.095 Sum_probs=122.6
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-.++|++|....|+..+.+++|..||....+ +| ..++.++ --+..+..+|..+.|.....| +.
T Consensus 182 aIRdlafSpnDskF~t~SdDg~ikiWdf~~~k------ee-~vL~GHg---wdVksvdWHP~kgLiasgskD------nl 245 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK------EE-RVLRGHG---WDVKSVDWHPTKGLIASGSKD------NL 245 (464)
T ss_pred hhheeccCCCCceeEEecCCCeEEEEeccCCc------hh-heeccCC---CCcceeccCCccceeEEccCC------ce
Confidence 34688999988888887999999999843222 23 2444443 246788888855655543222 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc-EEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
|..||++++.-+..... . .+-...+.+.++|+...|-+....+.++|.... .+.. +. .......
T Consensus 246 VKlWDprSg~cl~tlh~----H-KntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~-----~r-----~Hkkdv~ 310 (464)
T KOG0284|consen 246 VKLWDPRSGSCLATLHG----H-KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT-----YR-----GHKKDVT 310 (464)
T ss_pred eEeecCCCcchhhhhhh----c-cceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH-----hh-----cchhhhe
Confidence 88899998865422211 1 455667899999999999898889999987621 1111 11 0122377
Q ss_pred eEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 209 GIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 209 Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.++++|-. .|+++-...+.|+-......+ ....++- . . ......|+..|=|.+++++.
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~-p~~~i~~-A-H-d~~iwsl~~hPlGhil~tgs 369 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEE-PLGEIPP-A-H-DGEIWSLAYHPLGHILATGS 369 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccc-cccCCCc-c-c-ccceeeeeccccceeEeecC
Confidence 88999966 899999889998887776442 2222221 1 1 24467788889899988854
No 190
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=96.07 E-value=0.42 Score=43.03 Aligned_cols=188 Identities=14% Similarity=0.130 Sum_probs=107.3
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
.++-..+.-+.++.+.|+++|-.||+. ... . ..... .++....+.+. +++|.|...| ..+.
T Consensus 98 ~ci~~~~~~~~vIsgsWD~~ik~wD~R-~~~-----~---~~~~d--~~kkVy~~~v~--g~~LvVg~~~------r~v~ 158 (323)
T KOG1036|consen 98 RCIEYSYEVGCVISGSWDKTIKFWDPR-NKV-----V---VGTFD--QGKKVYCMDVS--GNRLVVGTSD------RKVL 158 (323)
T ss_pred EEEEeeccCCeEEEcccCccEEEEecc-ccc-----c---ccccc--cCceEEEEecc--CCEEEEeecC------ceEE
Confidence 456666666677777999999999953 331 0 11111 11244555553 6778774444 3599
Q ss_pred EEECCCCeEEEEeecCCCccCC-CCCCceeECCCCcEEEEeCCCCeEEEEccCCcE----EE-EecCCcccccccccccc
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEK-STADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL----LS-IIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~-~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~----~~-~~~~~~~~~~~~~~~~~ 205 (335)
.||++.....+...- ..+ ..-..++.-|++.-|++.+-.|||.+=..+... .+ .|.-..... .......
T Consensus 159 iyDLRn~~~~~q~re----S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~-~~~~~~y 233 (323)
T KOG1036|consen 159 IYDLRNLDEPFQRRE----SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSE-KDTEIIY 233 (323)
T ss_pred EEEcccccchhhhcc----ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeeccc-CCceEEE
Confidence 999986543321111 113 234578888888889999999999986655431 11 111000000 1111223
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEE
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVA 268 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va 268 (335)
-.|.|+|+|-..-+++-...|.|...|+...| ....+. . . -...--++++.+|. |-++
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rK-rl~q~~--~-~-~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRK-RLKQLA--K-Y-ETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchh-hhhhcc--C-C-CCceEEEEeccCCCeEEEE
Confidence 37999999976555666678889999988764 332232 1 0 01133577777774 5555
No 191
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=96.07 E-value=0.096 Score=48.74 Aligned_cols=194 Identities=12% Similarity=0.149 Sum_probs=122.7
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..+.|.|+|+.+++...+|...-|+ . ..+ ..+ ..++..+ ....++.... +++-.| ++|.. ..|.
T Consensus 100 ~~v~WtPeGRRLltgs~SGEFtLWN-g-~~f---nFE--tilQaHD---s~Vr~m~ws~-~g~wmi-SgD~g----G~iK 163 (464)
T KOG0284|consen 100 NVVRWTPEGRRLLTGSQSGEFTLWN-G-TSF---NFE--TILQAHD---SPVRTMKWSH-NGTWMI-SGDKG----GMIK 163 (464)
T ss_pred eeEEEcCCCceeEeecccccEEEec-C-cee---eHH--HHhhhhc---ccceeEEEcc-CCCEEE-EcCCC----ceEE
Confidence 5789999999999998888888885 2 221 011 0112222 2457888885 554444 45654 3577
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
.|++.=.-+... .. .......++++.|+..-|++-+..++|..+|.. .+..+++.. .+--+..+
T Consensus 164 yWqpnmnnVk~~-~a----hh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G----------HgwdVksv 228 (464)
T KOG0284|consen 164 YWQPNMNNVKII-QA----HHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG----------HGWDVKSV 228 (464)
T ss_pred ecccchhhhHHh-hH----hhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc----------CCCCccee
Confidence 777753322211 10 002356789999998999999999999998864 333332211 12237889
Q ss_pred EEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.+.|...|+++-...+.|.-.|++++. .+-.+. + . -....++.+.+++++..+......+++++..
T Consensus 229 dWHP~kgLiasgskDnlVKlWDprSg~-cl~tlh--~-H-KntVl~~~f~~n~N~Llt~skD~~~kv~DiR 294 (464)
T KOG0284|consen 229 DWHPTKGLIASGSKDNLVKLWDPRSGS-CLATLH--G-H-KNTVLAVKFNPNGNWLLTGSKDQSCKVFDIR 294 (464)
T ss_pred ccCCccceeEEccCCceeEeecCCCcc-hhhhhh--h-c-cceEEEEEEcCCCCeeEEccCCceEEEEehh
Confidence 999988788777777778888888763 222221 1 1 1346788888989877776655667777754
No 192
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=95.99 E-value=0.033 Score=34.90 Aligned_cols=41 Identities=10% Similarity=0.129 Sum_probs=31.7
Q ss_pred CeEEEEECCCC-EEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC
Q 039428 216 GFLIVIHMCSG-NLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS 261 (335)
Q Consensus 216 g~Lyvad~~~~-~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~ 261 (335)
++||.+|...+ +|.+.+.++. ..+.+-... +..|.|+|+|+
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs--~~~~vi~~~---l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGS--NRRTVISDD---LQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTST--SEEEEEESS---TSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCC--CeEEEEECC---CCCcCEEEECC
Confidence 47999999999 9999999997 433332222 67799999984
No 193
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.99 E-value=0.12 Score=49.44 Aligned_cols=189 Identities=11% Similarity=0.075 Sum_probs=112.4
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-..+|+++|.++.|.+..+|.|.+||..+.. + +-++.+.. .....|.+..++-+||-..-| +.
T Consensus 511 aCyALa~spDakvcFsccsdGnI~vwDLhnq~----~-----VrqfqGht-DGascIdis~dGtklWTGGlD------nt 574 (705)
T KOG0639|consen 511 ACYALAISPDAKVCFSCCSDGNIAVWDLHNQT----L-----VRQFQGHT-DGASCIDISKDGTKLWTGGLD------NT 574 (705)
T ss_pred hhhhhhcCCccceeeeeccCCcEEEEEcccce----e-----eecccCCC-CCceeEEecCCCceeecCCCc------cc
Confidence 34578899999999999889999999964332 1 22233322 245677787656789983222 46
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
|..||++.+......++. .....+-..|.|........++.++++...+...-.+.- .. .-.-.
T Consensus 575 vRcWDlregrqlqqhdF~------SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhl---he-------ScVLS 638 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHDFS------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHL---HE-------SCVLS 638 (705)
T ss_pred eeehhhhhhhhhhhhhhh------hhheecccCCCccceeeecccCcEEEEecCCccceeecc---cc-------cEEEE
Confidence 999999877544333331 122234456777766666777888888776544322211 00 12456
Q ss_pred EEEccCCeEEEEECCCCEE--EEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEE
Q 039428 210 IVYHPDGFLIVIHMCSGNL--FKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLV 278 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v--~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~ 278 (335)
+.|.+-|.-||+...++-+ ||..... .+|.... ....--..+..|++++|++.+.....|+
T Consensus 639 lKFa~cGkwfvStGkDnlLnawrtPyGa-----siFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 639 LKFAYCGKWFVSTGKDNLLNAWRTPYGA-----SIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVY 701 (705)
T ss_pred EEecccCceeeecCchhhhhhccCcccc-----ceeeccc---cCcceeeeeccCceEEEecCCCcceEEE
Confidence 7888889888887666644 4433322 2333221 1223345556677888887754344443
No 194
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=95.98 E-value=1.1 Score=41.29 Aligned_cols=198 Identities=11% Similarity=0.089 Sum_probs=118.8
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-.+++.+|.-++++.+..+..+.+||.. .+. . +....+.. +....+.+.+.+..+|-++.|. .
T Consensus 237 ~V~~L~lhPTldvl~t~grDst~RvWDiR-tr~-----~---V~~l~GH~-~~V~~V~~~~~dpqvit~S~D~------t 300 (460)
T KOG0285|consen 237 GVYCLDLHPTLDVLVTGGRDSTIRVWDIR-TRA-----S---VHVLSGHT-NPVASVMCQPTDPQVITGSHDS------T 300 (460)
T ss_pred eeEEEeccccceeEEecCCcceEEEeeec-ccc-----e---EEEecCCC-CcceeEEeecCCCceEEecCCc------e
Confidence 34678889888888888888889999853 431 1 22222221 2345677776678898876664 5
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc-cCCcEEEEecCCccccccccccccccC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG-VEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d-~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
|..||...|+......- . ......++..|+-++|.+.+. +.|-.++ |+|.+..- +.. .....|
T Consensus 301 vrlWDl~agkt~~tlt~--h---kksvral~lhP~e~~fASas~-dnik~w~~p~g~f~~n-----lsg-----h~~iin 364 (460)
T KOG0285|consen 301 VRLWDLRAGKTMITLTH--H---KKSVRALCLHPKENLFASASP-DNIKQWKLPEGEFLQN-----LSG-----HNAIIN 364 (460)
T ss_pred EEEeeeccCceeEeeec--c---cceeeEEecCCchhhhhccCC-ccceeccCCccchhhc-----ccc-----ccceee
Confidence 99999988876532211 0 234556888898888887544 4566665 55655431 111 223467
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCce--eEEEEeccCCc-CCCCCCeEEEcCCCc-EEEEecCCCeEEEEEcC
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEEE--EVKLIELRGGS-SLSLGDGLALLSPTK-LVVAGNPYPSARLVESS 281 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~--~~~~~~~~g~~-~~~~pdGia~d~~g~-l~va~~~~~~~~v~~~~ 281 (335)
.++...|| +|++-..++.|+..|...+-. ..+.+..+|+- .-.+....++|..|. |+.++. ...|.+..-+
T Consensus 365 tl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~ea-dKtIk~~keD 439 (460)
T KOG0285|consen 365 TLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEA-DKTIKMYKED 439 (460)
T ss_pred eeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccC-CcceEEEecc
Confidence 77777666 556777899999999988620 22223223311 012345567777774 444444 2456666543
No 195
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.95 E-value=0.28 Score=48.97 Aligned_cols=182 Identities=13% Similarity=0.145 Sum_probs=110.5
Q ss_pred eEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEE
Q 039428 54 AKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAY 133 (335)
Q Consensus 54 ia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~ 133 (335)
++|+++|+++|+.. ++.|-.+|..++.. . .+.. .++-. .....+++++++..|+.+.. + ..+..|
T Consensus 25 ~~~s~nG~~L~t~~-~d~Vi~idv~t~~~-----~-l~s~-~~ed~-d~ita~~l~~d~~~L~~a~r---s---~llrv~ 89 (775)
T KOG0319|consen 25 VAWSSNGQHLYTAC-GDRVIIIDVATGSI-----A-LPSG-SNEDE-DEITALALTPDEEVLVTASR---S---QLLRVW 89 (775)
T ss_pred eeECCCCCEEEEec-CceEEEEEccCCce-----e-cccC-Cccch-hhhheeeecCCccEEEEeec---c---ceEEEE
Confidence 89999999998874 56788888655541 1 0121 11100 23468888886666666421 1 247789
Q ss_pred ECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEc
Q 039428 134 DLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYH 213 (335)
Q Consensus 134 d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~ 213 (335)
++.++++....-. .. ....--+++||.|.+..+....+++.++|-.+..-.. .|.. .+.-...+.|.
T Consensus 90 ~L~tgk~irswKa--~H--e~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th----~fkG-----~gGvVssl~F~ 156 (775)
T KOG0319|consen 90 SLPTGKLIRSWKA--IH--EAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH----SFKG-----HGGVVSSLLFH 156 (775)
T ss_pred EcccchHhHhHhh--cc--CCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE----EecC-----CCceEEEEEeC
Confidence 9988866522111 00 1223469999999888888888999999988765441 2322 01115667788
Q ss_pred cCC--eEEEEECCCCEEEEEeCCCCceeEEEEe-ccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 214 PDG--FLIVIHMCSGNLFKIDIRKEEEEVKLIE-LRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 214 ~dg--~Lyvad~~~~~v~~~d~~~~~~~~~~~~-~~g~~~~~~pdGia~d~~g~l~va 268 (335)
|+- .|+++...++++..++.... .. .+. ... + .....++++.++++-.++
T Consensus 157 ~~~~~~lL~sg~~D~~v~vwnl~~~--~t-cl~~~~~-H-~S~vtsL~~~~d~~~~ls 209 (775)
T KOG0319|consen 157 PHWNRWLLASGATDGTVRVWNLNDK--RT-CLHTMIL-H-KSAVTSLAFSEDSLELLS 209 (775)
T ss_pred CccchhheeecCCCceEEEEEcccC--ch-HHHHHHh-h-hhheeeeeeccCCceEEE
Confidence 765 56677778899999999864 11 111 111 1 223567777777654444
No 196
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=95.82 E-value=0.019 Score=35.58 Aligned_cols=33 Identities=27% Similarity=0.265 Sum_probs=29.7
Q ss_pred CCCCCceeECCC-CcEEEEeCCCCeEEEEccCCc
Q 039428 153 KSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEGQ 185 (335)
Q Consensus 153 ~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g~ 185 (335)
...|+++++|+. +++|.+|...+.|.+.+.+|.
T Consensus 8 ~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~ 41 (43)
T smart00135 8 LGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT 41 (43)
T ss_pred CCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence 678999999997 579999999999999998874
No 197
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=95.82 E-value=0.75 Score=42.18 Aligned_cols=131 Identities=8% Similarity=-0.012 Sum_probs=78.0
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEee-cC-C-------cCCCCcceEEEe---CCCCeEEE
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-ED-D-------VVGNATMGIAVD---RPRNRLLV 117 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~-~-------~~~~~p~Gi~~d---~~~g~l~v 117 (335)
...++..+++|++++.+.....|+++|+.+|+ |+ |.. .+ . .....-+...+- +.++.|-+
T Consensus 145 HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~----I~----W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~Isl 216 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSRNTSTIYKIDPSTGK----II----WRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISL 216 (299)
T ss_pred EeeeeeecCCccEEEEecccCEEEEEECCCCc----EE----EEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEE
Confidence 45788889999876555777899999976665 22 321 12 0 000112333333 23566666
Q ss_pred EEec-----CCCCccceEEEEECCCCeEEEEeecCCCccCCC--CCCceeECCCCcEEEEeCCCCeEEEEccCCcEEE
Q 039428 118 AFTD-----VLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKS--TADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLS 188 (335)
Q Consensus 118 ~~~D-----~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~--~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~ 188 (335)
.... ......+.++.+|+++..............++. ..-.+..-++|+++|+....+++..++++|+.+.
T Consensus 217 FDN~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~~~~~~~~~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~~G~vv~ 294 (299)
T PF14269_consen 217 FDNANSDFNGTEPSRGLVLELDPETMTVTLVREYSDHPDGFYSPSQGSAQRLPNGNVLIGWGNNGRISEFTPDGEVVW 294 (299)
T ss_pred EcCCCCCCCCCcCCCceEEEEECCCCEEEEEEEeecCCCcccccCCCcceECCCCCEEEecCCCceEEEECCCCCEEE
Confidence 4221 001123679999999776553333321111121 2224566788999999999999999999998765
No 198
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.82 E-value=1.2 Score=38.99 Aligned_cols=193 Identities=15% Similarity=0.137 Sum_probs=119.0
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-..+.+.-+|+.-++...+.+|.-|++..+. .+. ..+.. |+-....+... ++.=++ ..+++ ..
T Consensus 19 aV~avryN~dGnY~ltcGsdrtvrLWNp~rg~----lik---tYsgh---G~EVlD~~~s~-Dnskf~---s~GgD--k~ 82 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGA----LIK---TYSGH---GHEVLDAALSS-DNSKFA---SCGGD--KA 82 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCceEEeecccccc----eee---eecCC---Cceeeeccccc-cccccc---cCCCC--ce
Confidence 34677888899866666778889999865443 121 11111 22334444443 333333 22334 36
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE---EEEecCCccccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL---LSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~---~~~~~~~~~~~~~~~~~~~~ 206 (335)
+..||.++|++...... . ....|.+++..+-.+.++.+....+..+|=.... ++++.. + .-+
T Consensus 83 v~vwDV~TGkv~Rr~rg--H---~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde--a--------~D~ 147 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRG--H---LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE--A--------KDG 147 (307)
T ss_pred EEEEEcccCeeeeeccc--c---cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh--h--------cCc
Confidence 99999999988744322 1 4567889999888899999998899999865432 221211 1 112
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
...|.+ .++.+++-+..|++.++|+..+ ... .+..| . -..-+.+.++|+...++.....++.++...
T Consensus 148 V~Si~v--~~heIvaGS~DGtvRtydiR~G--~l~-sDy~g-~---pit~vs~s~d~nc~La~~l~stlrLlDk~t 214 (307)
T KOG0316|consen 148 VSSIDV--AEHEIVAGSVDGTVRTYDIRKG--TLS-SDYFG-H---PITSVSFSKDGNCSLASSLDSTLRLLDKET 214 (307)
T ss_pred eeEEEe--cccEEEeeccCCcEEEEEeecc--eee-hhhcC-C---cceeEEecCCCCEEEEeeccceeeecccch
Confidence 333333 4678889999999999999876 221 12223 1 136788889998777755435567666543
No 199
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.80 E-value=2.3 Score=42.30 Aligned_cols=202 Identities=11% Similarity=0.191 Sum_probs=124.5
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
.++|+..+.+.+.++..+|.|-.|.+...- ..+ +++..++ ..+..+|+..+ +++|+-. +.. +.|.
T Consensus 29 ~slA~s~kS~~lAvsRt~g~IEiwN~~~~w-----~~~-~vi~g~~--drsIE~L~W~e-~~RLFS~--g~s----g~i~ 93 (691)
T KOG2048|consen 29 VSLAYSHKSNQLAVSRTDGNIEIWNLSNNW-----FLE-PVIHGPE--DRSIESLAWAE-GGRLFSS--GLS----GSIT 93 (691)
T ss_pred EEEEEeccCCceeeeccCCcEEEEccCCCc-----eee-EEEecCC--CCceeeEEEcc-CCeEEee--cCC----ceEE
Confidence 578999999999999889999999864333 222 2443333 24678999984 8999984 332 3599
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIV 211 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia 211 (335)
.||+.+++.....+.. .+.-+.+++.|.+....-....|.++-++-.-+.++. . ..|.. +....-.++
T Consensus 94 EwDl~~lk~~~~~d~~-----gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~-~-r~l~r-----q~sRvLsls 161 (691)
T KOG2048|consen 94 EWDLHTLKQKYNIDSN-----GGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITY-K-RSLMR-----QKSRVLSLS 161 (691)
T ss_pred EEecccCceeEEecCC-----CcceeEEEeCCccceEEeecCCceEEEEecCCceEEE-E-eeccc-----ccceEEEEE
Confidence 9999988776554431 2455778888876533333445555555443333321 0 01111 123356789
Q ss_pred EccCCeEEEEECCCCEEEEEeCCCCceeEEEEecc----CCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 212 YHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR----GGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 212 ~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~----g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
+++++.-.++-+.++.|...|...+. ++..+... ....-....++.+-.++.+...+. .+.+...+...
T Consensus 162 w~~~~~~i~~Gs~Dg~Iriwd~~~~~-t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS-~G~V~FWd~~~ 234 (691)
T KOG2048|consen 162 WNPTGTKIAGGSIDGVIRIWDVKSGQ-TLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDS-AGTVTFWDSIF 234 (691)
T ss_pred ecCCccEEEecccCceEEEEEcCCCc-eEEEeeecccccccCCceEEEEEEEeecCcEEEecC-CceEEEEcccC
Confidence 99999766788888989999988874 44433211 110112357788887777666655 25566655543
No 200
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.74 E-value=0.65 Score=44.61 Aligned_cols=198 Identities=17% Similarity=0.174 Sum_probs=119.4
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..|-.+....++|+.+++.....++..||.. ...| . +++ ..+. .+-.+..++++++.+-.|.|..|.
T Consensus 465 dnyiRSckL~pdgrtLivGGeastlsiWDLA-apTp-r-ika----elts-sapaCyALa~spDakvcFsccsdG----- 531 (705)
T KOG0639|consen 465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLA-APTP-R-IKA----ELTS-SAPACYALAISPDAKVCFSCCSDG----- 531 (705)
T ss_pred ccceeeeEecCCCceEEeccccceeeeeecc-CCCc-c-hhh----hcCC-cchhhhhhhcCCccceeeeeccCC-----
Confidence 4467788899999999999667788899853 3211 0 110 0111 112568899998777777776553
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccC-CcEEEEecCCcccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
.|.+||+....++. ++.+. .....-|.+.+||. +| +....++|..+|.. |+.+. .-.|..
T Consensus 532 -nI~vwDLhnq~~Vr--qfqGh---tDGascIdis~dGtklW-TGGlDntvRcWDlregrqlq---qhdF~S-------- 593 (705)
T KOG0639|consen 532 -NIAVWDLHNQTLVR--QFQGH---TDGASCIDISKDGTKLW-TGGLDNTVRCWDLREGRQLQ---QHDFSS-------- 593 (705)
T ss_pred -cEEEEEcccceeee--cccCC---CCCceeEEecCCCceee-cCCCccceeehhhhhhhhhh---hhhhhh--------
Confidence 39999998765552 34221 22344577788995 66 56677899999975 33322 112332
Q ss_pred ccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 206 GLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
..-.+-..|.+ +|.|.- .++.+++.-..+. ....+.... ...-.+.|..-|++||+-...|-+.+.+.+-|
T Consensus 594 QIfSLg~cP~~dWlavGM-ens~vevlh~skp--~kyqlhlhe----ScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 594 QIFSLGYCPTGDWLAVGM-ENSNVEVLHTSKP--EKYQLHLHE----SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred hheecccCCCccceeeec-ccCcEEEEecCCc--cceeecccc----cEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 24455666766 666654 5667888777765 333333322 12445777788999999554444444444433
No 201
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.70 E-value=2.1 Score=40.97 Aligned_cols=181 Identities=10% Similarity=0.063 Sum_probs=109.4
Q ss_pred eeeeEEcCCCCEEEEEecC-CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 51 CETAKWDDVGRRFLVSFLD-GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~-~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
..-+-+.++++..+++..+ ..+..||. .+.+ +. .-++... ......++.|.++++.++ .... +.
T Consensus 113 v~~~~f~~~d~t~l~s~sDd~v~k~~d~-s~a~----v~--~~l~~ht---DYVR~g~~~~~~~hivvt--GsYD---g~ 177 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVSGSDDKVVKYWDL-STAY----VQ--AELSGHT---DYVRCGDISPANDHIVVT--GSYD---GK 177 (487)
T ss_pred eeEEEecccCCeEEEecCCCceEEEEEc-CCcE----EE--EEecCCc---ceeEeeccccCCCeEEEe--cCCC---ce
Confidence 3667889998888888444 55555654 4442 11 1122221 234566777778888884 3332 46
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEE-ecCCcccccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSI-IRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~-~~~~~~~~~~~~~~~~~p 207 (335)
|..||.++.. .....+.. ......+.+-|.|.+.++ ..++.|.+||.- |..... ..+ + ....
T Consensus 178 vrl~DtR~~~-~~v~elnh----g~pVe~vl~lpsgs~ias-AgGn~vkVWDl~~G~qll~~~~~--H--------~KtV 241 (487)
T KOG0310|consen 178 VRLWDTRSLT-SRVVELNH----GCPVESVLALPSGSLIAS-AGGNSVKVWDLTTGGQLLTSMFN--H--------NKTV 241 (487)
T ss_pred EEEEEeccCC-ceeEEecC----CCceeeEEEcCCCCEEEE-cCCCeEEEEEecCCceehhhhhc--c--------cceE
Confidence 9999987652 22223321 122345777788888887 455678888875 443321 110 1 1237
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
..+++..+++-+++-.-++.|-+||+..-+ .+..+..++ . .-.|++.+++.-.|+
T Consensus 242 TcL~l~s~~~rLlS~sLD~~VKVfd~t~~K-vv~s~~~~~-p----vLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 242 TCLRLASDSTRLLSGSLDRHVKVFDTTNYK-VVHSWKYPG-P----VLSIAVSPDDQTVVI 296 (487)
T ss_pred EEEEeecCCceEeecccccceEEEEccceE-EEEeeeccc-c----eeeEEecCCCceEEE
Confidence 899999998655677788899999977654 555555544 1 356888887755555
No 202
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=95.69 E-value=1.5 Score=39.93 Aligned_cols=206 Identities=16% Similarity=0.199 Sum_probs=104.1
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-.+++++.+|..+.+...++.|..|+..+ +. ..+.+.++.. +.-..|.-+++.|+-..+.|... .+ +.|
T Consensus 89 vt~~~FsSdGK~lat~~~Dr~Ir~w~~~D--F~---~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~--~g---~~l 157 (420)
T KOG2096|consen 89 VTDVAFSSDGKKLATISGDRSIRLWDVRD--FE---NKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVK--RG---NKL 157 (420)
T ss_pred eeeeEEcCCCceeEEEeCCceEEEEecch--hh---hhhhhHhhcc-ccCCCceEEEECCCcceEEEEEc--cC---CEE
Confidence 46899999998777668889998887432 20 1122233221 11236888899875455555332 22 235
Q ss_pred EEEEC--CC-CeEE-EEeecC---CCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccc
Q 039428 131 AAYDL--ST-WKRL-FLTQLS---GKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 131 ~~~d~--~~-~~~~-~~~~~~---~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
.+|-. ++ |... ..+... -+....--.-++-+...+.+..+-+....|..++..|+.+..+...
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtn---------- 227 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTN---------- 227 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccc----------
Confidence 55543 21 2111 111110 0000001111233333444445566778899999999877654321
Q ss_pred ccccCeEEEccCC-eEEEEECCCC--EEEEEeCCCC---ceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEE
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCSG--NLFKIDIRKE---EEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARL 277 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~~--~v~~~d~~~~---~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v 277 (335)
...-.--+++|+| ++.++- .+- +||.+=.... ++..+.+.+.| . -.....+++.++.+=.++-...+..++
T Consensus 228 q~~n~~aavSP~GRFia~~g-FTpDVkVwE~~f~kdG~fqev~rvf~LkG-H-~saV~~~aFsn~S~r~vtvSkDG~wri 304 (420)
T KOG2096|consen 228 QSSNYDAAVSPDGRFIAVSG-FTPDVKVWEPIFTKDGTFQEVKRVFSLKG-H-QSAVLAAAFSNSSTRAVTVSKDGKWRI 304 (420)
T ss_pred cccccceeeCCCCcEEEEec-CCCCceEEEEEeccCcchhhhhhhheecc-c-hhheeeeeeCCCcceeEEEecCCcEEE
Confidence 1123455899999 454444 333 4443322222 22444556655 3 233566777776544444332355555
Q ss_pred EEc
Q 039428 278 VES 280 (335)
Q Consensus 278 ~~~ 280 (335)
.+.
T Consensus 305 wdt 307 (420)
T KOG2096|consen 305 WDT 307 (420)
T ss_pred eec
Confidence 543
No 203
>PHA02790 Kelch-like protein; Provisional
Probab=95.68 E-value=2 Score=42.09 Aligned_cols=177 Identities=10% Similarity=0.019 Sum_probs=90.6
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC--CCeEEEEccCCcEEEE
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV--SSKIWKVGVEGQLLSI 189 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~--~~~I~~~d~~g~~~~~ 189 (335)
++.||++.+.........+..||+.++.-....+.+.+ ... ...+.-+|.+|+.... ...+.++++....-..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~---r~~--~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~ 345 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP---RLY--ASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVN 345 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch---hhc--ceEEEECCEEEEECCcCCCCceEEEECCCCeEEE
Confidence 57888864311111124688999988764432222111 112 2222346889998643 3467888876433221
Q ss_pred ecCCccccccccccccccCeEEEccCCeEEEEECC---CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEE
Q 039428 190 IRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC---SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLV 266 (335)
Q Consensus 190 ~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~---~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~ 266 (335)
+ +.+.. ...-.+.+. -+|.||+.-.. ...+.++|+..+ ....++.-. . +.....+..-+|.+|
T Consensus 346 ~--~~l~~------~r~~~~~~~-~~g~IYviGG~~~~~~~ve~ydp~~~--~W~~~~~m~-~--~r~~~~~~~~~~~IY 411 (480)
T PHA02790 346 M--PSLLK------PRCNPAVAS-INNVIYVIGGHSETDTTTEYLLPNHD--QWQFGPSTY-Y--PHYKSCALVFGRRLF 411 (480)
T ss_pred C--CCCCC------CCcccEEEE-ECCEEEEecCcCCCCccEEEEeCCCC--EEEeCCCCC-C--ccccceEEEECCEEE
Confidence 1 11111 111223333 37899987432 245788898876 444432111 1 111222223468999
Q ss_pred EEecCCCeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEEeCCeEEEEe
Q 039428 267 VAGNPYPSARLVESSDG-WETASVVAKFNGPTHRVATAATVKDGRVYLSH 315 (335)
Q Consensus 267 va~~~~~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~~ 315 (335)
|.+. . ..+++...+ |.... ....|... .++++-+|+|||.-
T Consensus 412 v~GG--~-~e~ydp~~~~W~~~~---~m~~~r~~--~~~~v~~~~IYviG 453 (480)
T PHA02790 412 LVGR--N-AEFYCESSNTWTLID---DPIYPRDN--PELIIVDNKLLLIG 453 (480)
T ss_pred EECC--c-eEEecCCCCcEeEcC---CCCCCccc--cEEEEECCEEEEEC
Confidence 9964 2 445665544 76432 22223222 35666799999943
No 204
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=95.67 E-value=0.73 Score=47.20 Aligned_cols=160 Identities=14% Similarity=0.203 Sum_probs=97.4
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..++++.+|+.......+-.|-.++..+.. .+ ..+.... ....++.++| ++++.++.. .. +.|.
T Consensus 100 r~~~v~g~g~~iaagsdD~~vK~~~~~D~s------~~-~~lrgh~---apVl~l~~~p-~~~fLAvss-~d----G~v~ 163 (933)
T KOG1274|consen 100 RDLAVSGSGKMIAAGSDDTAVKLLNLDDSS------QE-KVLRGHD---APVLQLSYDP-KGNFLAVSS-CD----GKVQ 163 (933)
T ss_pred eEEEEecCCcEEEeecCceeEEEEeccccc------hh-eeecccC---CceeeeeEcC-CCCEEEEEe-cC----ceEE
Confidence 678999999877776656556555532222 11 1222111 2457999998 676666532 22 3599
Q ss_pred EEECCCCeEEEEeecCCCccC---CCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEE-ecCCcccccccccccccc
Q 039428 132 AYDLSTWKRLFLTQLSGKSEE---KSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSI-IRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~---~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~p 207 (335)
+||.+++.+......-.+... ....+-++..|+|.-|..-...+.|..++++|-.... +.. .+.. ...
T Consensus 164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~-~~~s-------s~~ 235 (933)
T KOG1274|consen 164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRD-KLSS-------SKF 235 (933)
T ss_pred EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecc-cccc-------cce
Confidence 999998866533222111111 1223457889995544444667899999998754432 211 1111 126
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~ 235 (335)
+-++|+|.|.-+.+..-+|+|.++|.+.
T Consensus 236 ~~~~wsPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 236 SDLQWSPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred EEEEEcCCCcEEeeeccCCcEEEEeccc
Confidence 7789999997667777899999999884
No 205
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.66 E-value=0.49 Score=45.36 Aligned_cols=184 Identities=13% Similarity=0.094 Sum_probs=106.8
Q ss_pred eeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 51 CETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
-++++.-... +|.++ ..++.|-.||.. .+ .+. +++.++. ....++.++ ...-|++....++ .
T Consensus 82 ~~Cv~~~s~S-~y~~sgG~~~~Vkiwdl~-~k----l~h--r~lkdh~---stvt~v~YN--~~DeyiAsvs~gG----d 144 (673)
T KOG4378|consen 82 AFCVACASQS-LYEISGGQSGCVKIWDLR-AK----LIH--RFLKDHQ---STVTYVDYN--NTDEYIASVSDGG----D 144 (673)
T ss_pred HHHHhhhhcc-eeeeccCcCceeeehhhH-HH----HHh--hhccCCc---ceeEEEEec--CCcceeEEeccCC----c
Confidence 3455555443 67777 556777778753 22 111 2333332 235666665 4556665443333 3
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEE-ecCCcccccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSI-IRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~p 207 (335)
|.+....+++... .+..+ . .....-+.+.+.- .+.++-+..|.|..+|..|..... +.. ....| .
T Consensus 145 iiih~~~t~~~tt--~f~~~-s-gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~-~HsAP--------~ 211 (673)
T KOG4378|consen 145 IIIHGTKTKQKTT--TFTID-S-GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASE-AHSAP--------C 211 (673)
T ss_pred EEEEecccCcccc--ceecC-C-CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhh-hccCC--------c
Confidence 7777777664331 11100 0 0011224456654 466777889999999998864331 100 01111 6
Q ss_pred CeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 208 NGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 208 ~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.||||+|.+ .|+|+-.-+.+|+.+|....+ ....+... .++ .-+++.++|.+.++++
T Consensus 212 ~gicfspsne~l~vsVG~Dkki~~yD~~s~~-s~~~l~y~--~Pl---stvaf~~~G~~L~aG~ 269 (673)
T KOG4378|consen 212 RGICFSPSNEALLVSVGYDKKINIYDIRSQA-STDRLTYS--HPL---STVAFSECGTYLCAGN 269 (673)
T ss_pred CcceecCCccceEEEecccceEEEeeccccc-ccceeeec--CCc---ceeeecCCceEEEeec
Confidence 899999988 888998889999999998764 33333321 222 4688888888888866
No 206
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=95.61 E-value=2 Score=40.19 Aligned_cols=200 Identities=13% Similarity=0.139 Sum_probs=114.5
Q ss_pred eeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecC--CcCC--CCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 52 ETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKED--DVVG--NATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~--~~~~--~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
-.++|+|-....+.+ ..+-+|.+|+.++... .. -+..| .+.| .+..=++.+|...++..+ + +.+
T Consensus 85 LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l----~~---~ltepvv~L~gH~rrVg~V~wHPtA~NVLls-a--g~D- 153 (472)
T KOG0303|consen 85 LDIDWCPFNDCVIASGSEDTKVMVWQIPENGL----TR---DLTEPVVELYGHQRRVGLVQWHPTAPNVLLS-A--GSD- 153 (472)
T ss_pred cccccCccCCceeecCCCCceEEEEECCCccc----cc---CcccceEEEeecceeEEEEeecccchhhHhh-c--cCC-
Confidence 478999988877777 6667787777665431 11 00111 1111 233345556544444442 1 112
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
+.|..||..+|+...... . ......+.+..||.++++.....+|.++|+....+..-+ ... .+..
T Consensus 154 -n~v~iWnv~tgeali~l~--h----pd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~-~~h-------eG~k 218 (472)
T KOG0303|consen 154 -NTVSIWNVGTGEALITLD--H----PDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEG-VAH-------EGAK 218 (472)
T ss_pred -ceEEEEeccCCceeeecC--C----CCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeec-ccc-------cCCC
Confidence 469999999997664322 1 345567889999999999999999999999855443111 011 1222
Q ss_pred cCeEEEccCCeEEEEECC---CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEE---cCC-CcEEEEecCCCeEEEEE
Q 039428 207 LNGIVYHPDGFLIVIHMC---SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLAL---LSP-TKLVVAGNPYPSARLVE 279 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~---~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~---d~~-g~l~va~~~~~~~~v~~ 279 (335)
|.=..|-.+|.++.+-.. ..++...|++.-........ +....|+-+ |++ +-+|+++-+..+||.+.
T Consensus 219 ~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e------lDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyE 292 (472)
T KOG0303|consen 219 PARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE------LDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFE 292 (472)
T ss_pred cceeEEeccCceeeeccccccccceeccCcccccCcceeEE------eccCCceEEeeecCCCCEEEEEecCCcceEEEE
Confidence 444445557766554432 34566666655321111111 222345543 666 46999987777888887
Q ss_pred cCCC
Q 039428 280 SSDG 283 (335)
Q Consensus 280 ~~~~ 283 (335)
..++
T Consensus 293 it~d 296 (472)
T KOG0303|consen 293 ITNE 296 (472)
T ss_pred ecCC
Confidence 6654
No 207
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.57 E-value=3 Score=41.95 Aligned_cols=224 Identities=17% Similarity=0.147 Sum_probs=119.6
Q ss_pred cCCCCEEEEE-ecC-----CeEEEEECCCCCCCcceeeeeEEeecCCcC-CCCcceEEEeCCCCeEEEEEecC-CCCccc
Q 039428 57 DDVGRRFLVS-FLD-----GGVGQVLVPDEYSPGTVLEEVKLVKEDDVV-GNATMGIAVDRPRNRLLVAFTDV-LGNKYS 128 (335)
Q Consensus 57 d~~g~~~~~~-~~~-----~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~-~~~p~Gi~~d~~~g~l~v~~~D~-~~~~~~ 128 (335)
...+.++.++ ... ..+..+|+..+. |.....+. ...-.|+++- +|.|||+.+-. +....+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~----------w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~ 349 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNE----------WSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLS 349 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCc----------EeecCCCCcccccccEEEE--CCEEEEEccccCCCcccc
Confidence 3345566666 332 467788864333 32222222 1345788876 68999974322 122336
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC-----CeEEEEccCCcEEEEecCCcccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS-----SKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~-----~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
.+.+||+.+++-....+... .-.--++++ =+|.+|+....+ ..|-++|+....-..... .. .
T Consensus 350 ~ve~YD~~~~~W~~~a~M~~----~R~~~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~--m~------~ 416 (571)
T KOG4441|consen 350 SVERYDPRTNQWTPVAPMNT----KRSDFGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP--ML------T 416 (571)
T ss_pred eEEEecCCCCceeccCCccC----ccccceeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCC--CC------c
Confidence 79999999887332222211 111122333 368899986443 467888887654321110 00 1
Q ss_pred ccccCeEEEccCCeEEEEECC------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCC-----
Q 039428 204 VFGLNGIVYHPDGFLIVIHMC------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPY----- 272 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~~------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~----- 272 (335)
...-.|++.- +|.||+.-.. -..+.++|+..+ ....++-=. . -..--|+++. ++.||+.+..+
T Consensus 417 ~r~~~gv~~~-~g~iYi~GG~~~~~~~l~sve~YDP~t~--~W~~~~~M~-~-~R~~~g~a~~-~~~iYvvGG~~~~~~~ 490 (571)
T KOG4441|consen 417 RRSGHGVAVL-GGKLYIIGGGDGSSNCLNSVECYDPETN--TWTLIAPMN-T-RRSGFGVAVL-NGKIYVVGGFDGTSAL 490 (571)
T ss_pred ceeeeEEEEE-CCEEEEEcCcCCCccccceEEEEcCCCC--ceeecCCcc-c-ccccceEEEE-CCEEEEECCccCCCcc
Confidence 1223455544 8899987652 267899999987 444443101 0 0123467766 57999995421
Q ss_pred CeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEEeCCeEEEEec
Q 039428 273 PSARLVESSDG-WETASVVAKFNGPTHRVATAATVKDGRVYLSHL 316 (335)
Q Consensus 273 ~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~~~ 316 (335)
..+..++...+ |+.. ..... .+...+++..++.||+.-.
T Consensus 491 ~~VE~ydp~~~~W~~v---~~m~~--~rs~~g~~~~~~~ly~vGG 530 (571)
T KOG4441|consen 491 SSVERYDPETNQWTMV---APMTS--PRSAVGVVVLGGKLYAVGG 530 (571)
T ss_pred ceEEEEcCCCCceeEc---ccCcc--ccccccEEEECCEEEEEec
Confidence 12333444333 6543 21211 2223467778999998544
No 208
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=95.56 E-value=1.6 Score=38.70 Aligned_cols=195 Identities=13% Similarity=0.094 Sum_probs=113.6
Q ss_pred ceeeeEEcCCCC-EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGR-RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~-~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.-+-++|++... ++++...+..|.+||...++. +.+ ..... .-.-+...|+++.+.+.+.| .
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~----~~~--i~~~~-----eni~i~wsp~g~~~~~~~kd------D 128 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKC----TAR--IETKG-----ENINITWSPDGEYIAVGNKD------D 128 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcE----EEE--eeccC-----cceEEEEcCCCCEEEEecCc------c
Confidence 456788988865 444447788999998654441 221 21111 12356677755555553322 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
.|..+|.++.+....... ....|.++...++++|+...+.|.|..+.-- -+.+..+ .. ...+-
T Consensus 129 ~it~id~r~~~~~~~~~~------~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si-----~A-----H~snC 192 (313)
T KOG1407|consen 129 RITFIDARTYKIVNEEQF------KFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSI-----KA-----HPSNC 192 (313)
T ss_pred cEEEEEecccceeehhcc------cceeeeeeecCCCCEEEEecCCceEEEEecccccccccc-----cc-----CCcce
Confidence 588889877655432221 4567788888788899988888988877633 2222211 10 11345
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCC-CCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSL-GDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~-pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
-.|.|+|+|+-+.+-+....+.-.|++.-- -.+.|.. +.. ..-+.+.-+|++..+.....-|-+-...+|
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~ELi-C~R~isR-----ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetG 263 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDELI-CERCISR-----LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETG 263 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhHhh-hheeecc-----ccCceEEEEeccCcceeeccCccceEEeEecccC
Confidence 677889999777666666666666766431 2233331 222 356777778887777554344554444444
No 209
>PHA02790 Kelch-like protein; Provisional
Probab=95.48 E-value=2.8 Score=41.12 Aligned_cols=175 Identities=10% Similarity=-0.067 Sum_probs=89.6
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 59 VGRRFLVSFLD-----GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 59 ~g~~~~~~~~~-----~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
++.+|+++..+ ..++++|+.... |...+.+.. ..-.+++.- +|.||+..+. .+. ..+.+
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~----------W~~~~~m~~~r~~~~~v~~--~~~iYviGG~-~~~--~sve~ 335 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNN----------WIPIPPMNSPRLYASGVPA--NNKLYVVGGL-PNP--TSVER 335 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCE----------EEECCCCCchhhcceEEEE--CCEEEEECCc-CCC--CceEE
Confidence 34555555321 468889864332 443343321 112344443 6899996431 111 35889
Q ss_pred EECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC---CCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 133 YDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV---SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~---~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
||+.+++-....+++ .+.... .++--+|++||.... ...+.++||+...-... +....| ..-.+
T Consensus 336 ydp~~n~W~~~~~l~---~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~--~~m~~~------r~~~~ 402 (480)
T PHA02790 336 WFHGDAAWVNMPSLL---KPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFG--PSTYYP------HYKSC 402 (480)
T ss_pred EECCCCeEEECCCCC---CCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeC--CCCCCc------cccce
Confidence 999876544322221 111222 223346899997543 24577888875443211 111110 11123
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
++ .-+|.|||.- |.+.++|++.+ ..+.++--. . -..--|+++- +|++||.+.
T Consensus 403 ~~-~~~~~IYv~G---G~~e~ydp~~~--~W~~~~~m~-~-~r~~~~~~v~-~~~IYviGG 454 (480)
T PHA02790 403 AL-VFGRRLFLVG---RNAEFYCESSN--TWTLIDDPI-Y-PRDNPELIIV-DNKLLLIGG 454 (480)
T ss_pred EE-EECCEEEEEC---CceEEecCCCC--cEeEcCCCC-C-CccccEEEEE-CCEEEEECC
Confidence 33 3478999874 45778898876 455443111 0 0112356554 579999954
No 210
>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....
Probab=95.46 E-value=0.039 Score=34.56 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=30.9
Q ss_pred CcEEEEeCCCC-eEEEEccCCcEEEE-ecCCccccccccccccccCeEEEcc
Q 039428 165 GNAYVTDVVSS-KIWKVGVEGQLLSI-IRSPLFTAKEWYKNVFGLNGIVYHP 214 (335)
Q Consensus 165 G~lyV~d~~~~-~I~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~p~Gia~~~ 214 (335)
|++|.+|.... .|.+.+.+|...+. +.. ....|+|||+++
T Consensus 1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~----------~l~~P~giaVD~ 42 (42)
T PF00058_consen 1 GKIYWTDWSQDPSIERANLDGSNRRTVISD----------DLQHPEGIAVDW 42 (42)
T ss_dssp TEEEEEETTTTEEEEEEETTSTSEEEEEES----------STSSEEEEEEET
T ss_pred CEEEEEECCCCcEEEEEECCCCCeEEEEEC----------CCCCcCEEEECC
Confidence 57999999999 99999999876443 322 234699999984
No 211
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=95.46 E-value=0.45 Score=42.75 Aligned_cols=155 Identities=11% Similarity=0.024 Sum_probs=96.8
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
-++.|.++++.++.+..+.+|+.||..+|+. .. ++-... ...+.+... +.|-..|+++.. + ..+.
T Consensus 94 M~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~----~r--k~k~h~----~~vNs~~p~-rrg~~lv~Sgsd--D--~t~k 158 (338)
T KOG0265|consen 94 MELHGMRDGSHILSCGTDKTVRGWDAETGKR----IR--KHKGHT----SFVNSLDPS-RRGPQLVCSGSD--D--GTLK 158 (338)
T ss_pred EeeeeccCCCEEEEecCCceEEEEeccccee----ee--hhcccc----ceeeecCcc-ccCCeEEEecCC--C--ceEE
Confidence 4778899999998888899999999876662 11 121111 234455544 356666754322 2 4699
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEE
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIV 211 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia 211 (335)
.||.+.++...... .......+.+..++.=.++..-++.|.++|+........-++. .--..||.
T Consensus 159 l~D~R~k~~~~t~~------~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh---------~DtIt~ls 223 (338)
T KOG0265|consen 159 LWDIRKKEAIKTFE------NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGH---------ADTITGLS 223 (338)
T ss_pred EEeecccchhhccc------cceeEEEEEecccccceeeccccCceeeeccccCcceEEeecc---------cCceeeEE
Confidence 99988654432110 0233455777777665556667788999998422221111111 11278999
Q ss_pred EccCCeEEEEECCCCEEEEEeCCCC
Q 039428 212 YHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 212 ~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
++++|.-..+++-++.+.++|...-
T Consensus 224 ls~~gs~llsnsMd~tvrvwd~rp~ 248 (338)
T KOG0265|consen 224 LSRYGSFLLSNSMDNTVRVWDVRPF 248 (338)
T ss_pred eccCCCccccccccceEEEEEeccc
Confidence 9999966678888888888887763
No 212
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=95.43 E-value=2 Score=40.91 Aligned_cols=198 Identities=14% Similarity=0.156 Sum_probs=110.0
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..++-++.|..++.+.-.+.||.|....|.- +. ++... -....-|.+.. +|..+++.+ .+ +.|+
T Consensus 85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~L----L~---v~~aH---YQ~ITcL~fs~-dgs~iiTgs---kD--g~V~ 148 (476)
T KOG0646|consen 85 HALASSNLGYFLLAGTISGNLYLWELSSGIL----LN---VLSAH---YQSITCLKFSD-DGSHIITGS---KD--GAVL 148 (476)
T ss_pred eeeecCCCceEEEeecccCcEEEEEeccccH----HH---HHHhh---ccceeEEEEeC-CCcEEEecC---CC--ccEE
Confidence 5778889888776665688999998766651 21 11111 13456788874 677777421 11 3577
Q ss_pred EEECCC-------CeEEEEeecCCCccCCCCCCceeECCCC---cEEEEeCCCCeEEEEccCCc-EEEEecCCccccccc
Q 039428 132 AYDLST-------WKRLFLTQLSGKSEEKSTADDIAVDAEG---NAYVTDVVSSKIWKVGVEGQ-LLSIIRSPLFTAKEW 200 (335)
Q Consensus 132 ~~d~~~-------~~~~~~~~~~~~~~~~~~p~~~~vd~~G---~lyV~d~~~~~I~~~d~~g~-~~~~~~~~~~~~~~~ 200 (335)
+|+... +.+.....+... .-...|+.++..| ++|- -+....+..+|..+. .+..+ .|.
T Consensus 149 vW~l~~lv~a~~~~~~~p~~~f~~H---tlsITDl~ig~Gg~~~rl~T-aS~D~t~k~wdlS~g~LLlti---~fp---- 217 (476)
T KOG0646|consen 149 VWLLTDLVSADNDHSVKPLHIFSDH---TLSITDLQIGSGGTNARLYT-ASEDRTIKLWDLSLGVLLLTI---TFP---- 217 (476)
T ss_pred EEEEEeecccccCCCccceeeeccC---cceeEEEEecCCCccceEEE-ecCCceEEEEEeccceeeEEE---ecC----
Confidence 776421 111111111110 1223566676554 4443 355566666776533 32211 121
Q ss_pred cccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCcee-------------EEEEeccCCcCCCCCCeEEEcCCCcEEE
Q 039428 201 YKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEE-------------VKLIELRGGSSLSLGDGLALLSPTKLVV 267 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~-------------~~~~~~~g~~~~~~pdGia~d~~g~l~v 267 (335)
..++.+++||.++..+.-+..|.|+.++...-.+. .+.-...|...-....-+++.-||++.+
T Consensus 218 ----~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl 293 (476)
T KOG0646|consen 218 ----SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL 293 (476)
T ss_pred ----CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence 34899999998854445557888988877653100 0010111211001345688999999999
Q ss_pred EecCCCeEEEEEc
Q 039428 268 AGNPYPSARLVES 280 (335)
Q Consensus 268 a~~~~~~~~v~~~ 280 (335)
++..++.++|.+.
T Consensus 294 SGd~dg~VcvWdi 306 (476)
T KOG0646|consen 294 SGDEDGKVCVWDI 306 (476)
T ss_pred eeCCCCCEEEEec
Confidence 9776677777664
No 213
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=95.42 E-value=0.31 Score=44.06 Aligned_cols=115 Identities=15% Similarity=0.193 Sum_probs=75.2
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..+.++|...++..+..+++|--||-. +... -...+++++.. ....|.++| .|.+..+..|- ..+.
T Consensus 176 n~l~FHPre~ILiS~srD~tvKlFDfs-K~sa---KrA~K~~qd~~----~vrsiSfHP-sGefllvgTdH-----p~~r 241 (430)
T KOG0640|consen 176 NDLDFHPRETILISGSRDNTVKLFDFS-KTSA---KRAFKVFQDTE----PVRSISFHP-SGEFLLVGTDH-----PTLR 241 (430)
T ss_pred cceeecchhheEEeccCCCeEEEEecc-cHHH---HHHHHHhhccc----eeeeEeecC-CCceEEEecCC-----Ccee
Confidence 578999999888777889999888843 3210 00001222221 457899998 55544432332 3588
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEcc
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGV 182 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~ 182 (335)
.||.++-+-....+ +. .+-....+.+...+.|++||+.+..|.|..+|-
T Consensus 242 lYdv~T~Qcfvsan-Pd-~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDG 290 (430)
T KOG0640|consen 242 LYDVNTYQCFVSAN-PD-DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDG 290 (430)
T ss_pred EEeccceeEeeecC-cc-cccccceeEEEecCCccEEEEeccCCcEEeecc
Confidence 89988765443333 21 222456678888999999999999999999974
No 214
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=95.37 E-value=1.7 Score=37.97 Aligned_cols=154 Identities=14% Similarity=0.131 Sum_probs=92.8
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
--.++...+...+.....+..++.||..+|+ +.. +|- ... ...+.++++. .-.+.+. +.. + ..+
T Consensus 62 VlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk----v~R--r~r-gH~---aqVNtV~fNe-esSVv~S-gsf--D--~s~ 125 (307)
T KOG0316|consen 62 VLDAALSSDNSKFASCGGDKAVQVWDVNTGK----VDR--RFR-GHL---AQVNTVRFNE-ESSVVAS-GSF--D--SSV 125 (307)
T ss_pred eeeccccccccccccCCCCceEEEEEcccCe----eee--ecc-ccc---ceeeEEEecC-cceEEEe-ccc--c--cee
Confidence 3345556665555444667889999987776 222 232 111 2567899985 4555552 222 1 358
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCe
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
..||=++......--+... .... +.+|=.+...|+.+..|++.++|.. |.... .-|..| .|.
T Consensus 126 r~wDCRS~s~ePiQildea---~D~V--~Si~v~~heIvaGS~DGtvRtydiR~G~l~s----Dy~g~p--------it~ 188 (307)
T KOG0316|consen 126 RLWDCRSRSFEPIQILDEA---KDGV--SSIDVAEHEIVAGSVDGTVRTYDIRKGTLSS----DYFGHP--------ITS 188 (307)
T ss_pred EEEEcccCCCCccchhhhh---cCce--eEEEecccEEEeeccCCcEEEEEeecceeeh----hhcCCc--------cee
Confidence 8999776543311001000 1111 3445557788888999999999975 43322 222222 799
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCc
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEE 237 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~ 237 (335)
+.+++||+-..+.+-+..|.-+|..+++
T Consensus 189 vs~s~d~nc~La~~l~stlrLlDk~tGk 216 (307)
T KOG0316|consen 189 VSFSKDGNCSLASSLDSTLRLLDKETGK 216 (307)
T ss_pred EEecCCCCEEEEeeccceeeecccchhH
Confidence 9999999666666778888888888763
No 215
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=95.34 E-value=0.06 Score=39.52 Aligned_cols=48 Identities=19% Similarity=0.198 Sum_probs=34.8
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccC
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVE 183 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~ 183 (335)
+.|.-||++. ..... .++..||||++++++ .+||++...+.|+++..+
T Consensus 36 ~~Vvyyd~~~--~~~va------~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKE--VKVVA------SGFSFANGIAISPDKKYLYVASSLAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCE--eEEee------ccCCCCceEEEcCCCCEEEEEeccCCeEEEEEec
Confidence 3466677643 22221 237899999999987 599999999999988653
No 216
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=95.33 E-value=3 Score=42.17 Aligned_cols=206 Identities=11% Similarity=0.098 Sum_probs=120.5
Q ss_pred ceeEEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEE
Q 039428 39 THVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVA 118 (335)
Q Consensus 39 ~~~~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~ 118 (335)
.+.+++.+.+.--.+++++.+. .+..+..+++|-.|+..+.+. ++.+ +. +...+-.+-| +++..+.
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~d~-~~~~Sga~~SikiWn~~t~kc-------iRTi--~~---~y~l~~~Fvp-gd~~Iv~ 429 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSSDS-ILLASGAGESIKIWNRDTLKC-------IRTI--TC---GYILASKFVP-GDRYIVL 429 (888)
T ss_pred cceeeeccchhheeEEEeecCc-eeeeecCCCcEEEEEccCcce-------eEEe--cc---ccEEEEEecC-CCceEEE
Confidence 3456666665566788888764 555666678898897533331 1122 11 1344566666 4444443
Q ss_pred EecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC------CcEEEEec-
Q 039428 119 FTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE------GQLLSIIR- 191 (335)
Q Consensus 119 ~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~------g~~~~~~~- 191 (335)
+ ..+ +.+..||..+..+.-.++. . -...+.++..||+.-+|+.+....|.-+|.. |...+++.
T Consensus 430 -G-~k~---Gel~vfdlaS~~l~Eti~A----H-dgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl 499 (888)
T KOG0306|consen 430 -G-TKN---GELQVFDLASASLVETIRA----H-DGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSL 499 (888)
T ss_pred -e-ccC---CceEEEEeehhhhhhhhhc----c-ccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeee
Confidence 2 222 4589999887655422221 1 2456789999999999998887777665532 21111110
Q ss_pred --CCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEe
Q 039428 192 --SPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAG 269 (335)
Q Consensus 192 --~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~ 269 (335)
...+.- ....-.+.++|||.+.+..--++++.+|-+++-+ ..+.+-| +.++ .--|.+.+|+++.|++
T Consensus 500 ~~~rtLel------~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlK---FflsLYG-HkLP-V~smDIS~DSklivTg 568 (888)
T KOG0306|consen 500 KHTRTLEL------EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLK---FFLSLYG-HKLP-VLSMDISPDSKLIVTG 568 (888)
T ss_pred ccceEEec------cccEEEEEEcCCCcEEEEEeccCeEEEEEeccee---eeeeecc-cccc-eeEEeccCCcCeEEec
Confidence 001111 1125678999999666666678888888777642 2333434 3243 3567777888999997
Q ss_pred cCCCeEEEEE
Q 039428 270 NPYPSARLVE 279 (335)
Q Consensus 270 ~~~~~~~v~~ 279 (335)
....++.+.-
T Consensus 569 SADKnVKiWG 578 (888)
T KOG0306|consen 569 SADKNVKIWG 578 (888)
T ss_pred cCCCceEEec
Confidence 6444455543
No 217
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=95.28 E-value=2.9 Score=40.10 Aligned_cols=137 Identities=18% Similarity=0.076 Sum_probs=71.2
Q ss_pred eEEEEECCCCeEE-EEeecCC---Ccc-----CCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccc
Q 039428 129 ALAAYDLSTWKRL-FLTQLSG---KSE-----EKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKE 199 (335)
Q Consensus 129 ~v~~~d~~~~~~~-~~~~~~~---~~~-----~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~ 199 (335)
.|+.|||++..+. ..+.++- +.+ +..+.++.++. +|++++.= ..|+.+..++-+.....++.+
T Consensus 288 dIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~-~Gd~ia~V-SRGkaFi~~~~~~~~iqv~~~------ 359 (668)
T COG4946 288 DIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVV-NGDYIALV-SRGKAFIMRPWDGYSIQVGKK------ 359 (668)
T ss_pred cEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccC-CCcEEEEE-ecCcEEEECCCCCeeEEcCCC------
Confidence 3888888876554 2222211 111 12333444442 45444432 245566666654444322211
Q ss_pred ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 200 WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
+...-.-+..+++ .+.+.......|-.+|.+++ .++.+.- + ++....+.++++|+..++.+....+++++
T Consensus 360 ---~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~--e~kr~e~-~---lg~I~av~vs~dGK~~vvaNdr~el~vid 429 (668)
T COG4946 360 ---GGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGG--EVKRIEK-D---LGNIEAVKVSPDGKKVVVANDRFELWVID 429 (668)
T ss_pred ---CceEEEEEccCCc-ceEEeccCCceEEEEecCCc--eEEEeeC-C---ccceEEEEEcCCCcEEEEEcCceEEEEEE
Confidence 0111111222222 45556666778888888887 5555542 1 45577899999987444433235688888
Q ss_pred cCCC
Q 039428 280 SSDG 283 (335)
Q Consensus 280 ~~~~ 283 (335)
.+.|
T Consensus 430 idng 433 (668)
T COG4946 430 IDNG 433 (668)
T ss_pred ecCC
Confidence 7665
No 218
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=95.26 E-value=0.32 Score=44.81 Aligned_cols=153 Identities=14% Similarity=0.179 Sum_probs=92.0
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEc
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVG 181 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d 181 (335)
..||.-.. .+.++++.+ -.|-.||..-...+...... .....-+.+.|-- .+..+....+.|+.+|
T Consensus 150 ~~gIdh~~-~~~~FaTcG-------e~i~IWD~~R~~Pv~smswG-----~Dti~svkfNpvETsILas~~sDrsIvLyD 216 (433)
T KOG0268|consen 150 YLGIDHHR-KNSVFATCG-------EQIDIWDEQRDNPVSSMSWG-----ADSISSVKFNPVETSILASCASDRSIVLYD 216 (433)
T ss_pred cccccccc-ccccccccC-------ceeeecccccCCccceeecC-----CCceeEEecCCCcchheeeeccCCceEEEe
Confidence 35665553 566777432 13777777543333111110 1111234555543 4666665677888888
Q ss_pred cCC-cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc
Q 039428 182 VEG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL 260 (335)
Q Consensus 182 ~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d 260 (335)
... ..+.- .. ....+|+|+|+|+++.|++...+..+|-+|...-+..+.+... . ......+.+.
T Consensus 217 ~R~~~Pl~K-----Vi------~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~d---h-vsAV~dVdfs 281 (433)
T KOG0268|consen 217 LRQASPLKK-----VI------LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKD---H-VSAVMDVDFS 281 (433)
T ss_pred cccCCccce-----ee------eeccccceecCccccceeeccccccceehhhhhhcccchhhcc---c-ceeEEEeccC
Confidence 753 22221 00 2345999999998899999999999999999874312333321 2 1224567778
Q ss_pred CCCcEEEEecCCCeEEEEEcCCC
Q 039428 261 SPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 261 ~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
|.|.=+|++.-..+|+++..+.+
T Consensus 282 ptG~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 282 PTGQEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred CCcchhccccccceEEEeecCCC
Confidence 88988888765678998887654
No 219
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.25 E-value=0.24 Score=47.37 Aligned_cols=113 Identities=14% Similarity=0.147 Sum_probs=73.7
Q ss_pred eEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 54 AKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 54 ia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
+.+++.-+.+.+. ..+|.|..||. ++..| ...+.........||.+.|.+..|+|.. +-+ .+|..
T Consensus 170 l~ys~skr~lL~~asd~G~VtlwDv-~g~sp--------~~~~~~~HsAP~~gicfspsne~l~vsV---G~D--kki~~ 235 (673)
T KOG4378|consen 170 LRYSPSKRFLLSIASDKGAVTLWDV-QGMSP--------IFHASEAHSAPCRGICFSPSNEALLVSV---GYD--KKINI 235 (673)
T ss_pred eecccccceeeEeeccCCeEEEEec-cCCCc--------ccchhhhccCCcCcceecCCccceEEEe---ccc--ceEEE
Confidence 4556665555555 77889999985 56532 1112221112458999999777777743 223 36999
Q ss_pred EECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE
Q 039428 133 YDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL 186 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~ 186 (335)
||..+.+....... ......+++.++|.+.++...+|+|+.+|..+..
T Consensus 236 yD~~s~~s~~~l~y------~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 236 YDIRSQASTDRLTY------SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK 283 (673)
T ss_pred eecccccccceeee------cCCcceeeecCCceEEEeecCCceEEEEecccCC
Confidence 99876554322111 1223459999999999999999999999988653
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=95.15 E-value=2.7 Score=38.95 Aligned_cols=167 Identities=13% Similarity=0.133 Sum_probs=96.3
Q ss_pred cceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 49 FLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
..-.++.|.+||..+... ..+..|..||+..+.. .++. ..+. ....=+..+|+++-++++..|..
T Consensus 196 ~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-------~pL~-~~gl--gg~slLkwSPdgd~lfaAt~dav---- 261 (445)
T KOG2139|consen 196 NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-------IPLI-PKGL--GGFSLLKWSPDGDVLFAATCDAV---- 261 (445)
T ss_pred ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc-------cccc-ccCC--CceeeEEEcCCCCEEEEecccce----
Confidence 345899999999999888 6678899999655542 1222 1111 23345678887777777655531
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCC------------c
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSP------------L 194 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~------------~ 194 (335)
...+...-........+ + ..+.....-+|.|+ +.++-+...+||.+.-+++-....+.. .
T Consensus 262 --frlw~e~q~wt~erw~l---g--sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e 334 (445)
T KOG2139|consen 262 --FRLWQENQSWTKERWIL---G--SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE 334 (445)
T ss_pred --eeeehhcccceecceec---c--CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchh
Confidence 22332221111111111 1 23667788899995 777778889999988766543221100 0
Q ss_pred cccc-cccccccccCeEEEccCC-eEEEEECCCC-------EEEEEeCCCC
Q 039428 195 FTAK-EWYKNVFGLNGIVYHPDG-FLIVIHMCSG-------NLFKIDIRKE 236 (335)
Q Consensus 195 ~~~~-~~~~~~~~p~Gia~~~dg-~Lyvad~~~~-------~v~~~d~~~~ 236 (335)
.+.- +..--...+..||+||.| +|-|.-.+.. .|.++|....
T Consensus 335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~s 385 (445)
T KOG2139|consen 335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKS 385 (445)
T ss_pred hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccccc
Confidence 0000 000012348999999999 7877765544 3556665543
No 221
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=95.03 E-value=1.3 Score=40.62 Aligned_cols=125 Identities=14% Similarity=0.116 Sum_probs=79.1
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecC-C-----CccCCCCCCceeEC----CCCcEEEEeC
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLS-G-----KSEEKSTADDIAVD----AEGNAYVTDV 172 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~-~-----~~~~~~~p~~~~vd----~~G~lyV~d~ 172 (335)
.+.|..+. +|+++|..-.. +.|+++|+++|++++....+ . +...+..-.+..+- ++++|-+-|-
T Consensus 146 iNsV~~~~-~G~yLiS~R~~-----~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 146 INSVDKDD-DGDYLISSRNT-----STIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred eeeeeecC-CccEEEEeccc-----CEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 47888885 77887743222 67999999999998765432 0 01114445566665 5666666554
Q ss_pred ----------CCCeEEEEccCCcEEEEecCCccc-cccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 173 ----------VSSKIWKVGVEGQLLSIIRSPLFT-AKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 173 ----------~~~~I~~~d~~g~~~~~~~~~~~~-~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
..++|+.+|+..+..+.... +. .+.. -.-...-.+..-|.|+++|+....+++..++.++.
T Consensus 220 ~~~~~~~~~~s~~~v~~ld~~~~~~~~~~~--~~~~~~~-~~s~~~G~~Q~L~nGn~li~~g~~g~~~E~~~~G~ 291 (299)
T PF14269_consen 220 ANSDFNGTEPSRGLVLELDPETMTVTLVRE--YSDHPDG-FYSPSQGSAQRLPNGNVLIGWGNNGRISEFTPDGE 291 (299)
T ss_pred CCCCCCCCcCCCceEEEEECCCCEEEEEEE--eecCCCc-ccccCCCcceECCCCCEEEecCCCceEEEECCCCC
Confidence 46889999998766554321 11 1100 00011234455667999999999999999999886
No 222
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.96 E-value=3.3 Score=38.99 Aligned_cols=152 Identities=17% Similarity=0.141 Sum_probs=88.1
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCc-CCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEE
Q 039428 56 WDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDV-VGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYD 134 (335)
Q Consensus 56 ~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~-~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d 134 (335)
.+.+|.+|+. ..++.|+.+|+.++.. .|...... ......++..+ +|+||+. +..+ .++.+|
T Consensus 65 ~~~dg~v~~~-~~~G~i~A~d~~~g~~--------~W~~~~~~~~~~~~~~~~~~--~G~i~~g--~~~g----~~y~ld 127 (370)
T COG1520 65 ADGDGTVYVG-TRDGNIFALNPDTGLV--------KWSYPLLGAVAQLSGPILGS--DGKIYVG--SWDG----KLYALD 127 (370)
T ss_pred EeeCCeEEEe-cCCCcEEEEeCCCCcE--------EecccCcCcceeccCceEEe--CCeEEEe--cccc----eEEEEE
Confidence 6667766554 5677999999755541 13211110 00112344443 7999994 3322 499999
Q ss_pred CCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeEEEc
Q 039428 135 LSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYH 213 (335)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~ 213 (335)
.++|+..+...... . ..-.+-++-.++.+|+.. ..+.++.++.+ |......+.+.. . ......... .
T Consensus 128 ~~~G~~~W~~~~~~--~--~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~~~~~-~-----~~~~~~~~~-~ 195 (370)
T COG1520 128 ASTGTLVWSRNVGG--S--PYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYETPAP-L-----SLSIYGSPA-I 195 (370)
T ss_pred CCCCcEEEEEecCC--C--eEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEecCCc-c-----ccccccCce-e
Confidence 98898887766533 0 111223444678888874 66899999998 655443221110 0 011122222 4
Q ss_pred cCCeEEEEECC-CCEEEEEeCCCC
Q 039428 214 PDGFLIVIHMC-SGNLFKIDIRKE 236 (335)
Q Consensus 214 ~dg~Lyvad~~-~~~v~~~d~~~~ 236 (335)
.++.+|+.... ++.++.+++..+
T Consensus 196 ~~~~vy~~~~~~~~~~~a~~~~~G 219 (370)
T COG1520 196 ASGTVYVGSDGYDGILYALNAEDG 219 (370)
T ss_pred ecceEEEecCCCcceEEEEEccCC
Confidence 47789988764 568999999765
No 223
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=94.91 E-value=1.2 Score=42.45 Aligned_cols=169 Identities=12% Similarity=0.185 Sum_probs=96.6
Q ss_pred CceeEEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcce---eeeeEEeecCCcCCCCcce-EEEeCCCC
Q 039428 38 ATHVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTV---LEEVKLVKEDDVVGNATMG-IAVDRPRN 113 (335)
Q Consensus 38 ~~~~~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v---~~~~~~~~~~~~~~~~p~G-i~~d~~~g 113 (335)
+.+...+.+-.---.++-|+|.|.++..+..++++-.|...+...--.. -+++-.+.+ .|.| +.-.+..+
T Consensus 349 ~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~w------sp~g~v~~n~~~~ 422 (524)
T KOG0273|consen 349 DRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKW------SPTGPVTSNPNMN 422 (524)
T ss_pred CCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEee------cCCCCccCCCcCC
Confidence 3444555443444578999999999888888898888863323210000 000000111 1222 22223233
Q ss_pred eEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecC
Q 039428 114 RLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRS 192 (335)
Q Consensus 114 ~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~ 192 (335)
...+. +.. + +.|..||...+....... .. .....++++.|+|+...+.+..++|..++... +..+-
T Consensus 423 ~~l~s-as~--d--stV~lwdv~~gv~i~~f~--kH---~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s--- 489 (524)
T KOG0273|consen 423 LMLAS-ASF--D--STVKLWDVESGVPIHTLM--KH---QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS--- 489 (524)
T ss_pred ceEEE-eec--C--CeEEEEEccCCceeEeec--cC---CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe---
Confidence 33322 211 1 469999999887664321 11 23456899999999999989999999988764 33331
Q ss_pred CccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeC
Q 039428 193 PLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 193 ~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~ 233 (335)
+.. ..+..-++++.+|....+-...+.+.++|.
T Consensus 490 --~~~------~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 490 --YQG------TGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred --ecC------CCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 211 123567899998855545445666666664
No 224
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=94.85 E-value=3.6 Score=38.89 Aligned_cols=100 Identities=16% Similarity=0.045 Sum_probs=47.7
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC--CCcceEEEeCCCCeEEEEEecCC-C-----Cccce
Q 039428 59 VGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG--NATMGIAVDRPRNRLLVAFTDVL-G-----NKYSA 129 (335)
Q Consensus 59 ~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~--~~p~Gi~~d~~~g~l~v~~~D~~-~-----~~~~~ 129 (335)
++.+|+.. .....++++|..... . .|...+.+.. ..-.+++.- ++.|||..+... . .....
T Consensus 38 ~~~iyv~gG~~~~~~~~~d~~~~~------~--~W~~l~~~p~~~r~~~~~v~~--~~~IYV~GG~~~~~~~~~~~~~~~ 107 (376)
T PRK14131 38 NNTVYVGLGSAGTSWYKLDLNAPS------K--GWTKIAAFPGGPREQAVAAFI--DGKLYVFGGIGKTNSEGSPQVFDD 107 (376)
T ss_pred CCEEEEEeCCCCCeEEEEECCCCC------C--CeEECCcCCCCCcccceEEEE--CCEEEEEcCCCCCCCCCceeEccc
Confidence 45666656 445678899853211 0 1322222211 122344443 688999743211 0 00145
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeEC-CCCcEEEEeC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVD-AEGNAYVTDV 172 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd-~~G~lyV~d~ 172 (335)
+++||+.+++-...... .+ .......++- -+++|||...
T Consensus 108 v~~YD~~~n~W~~~~~~-~p---~~~~~~~~~~~~~~~IYv~GG 147 (376)
T PRK14131 108 VYKYDPKTNSWQKLDTR-SP---VGLAGHVAVSLHNGKAYITGG 147 (376)
T ss_pred EEEEeCCCCEEEeCCCC-CC---CcccceEEEEeeCCEEEEECC
Confidence 89999988754422211 11 1111112222 4688999754
No 225
>smart00284 OLF Olfactomedin-like domains.
Probab=94.82 E-value=2.8 Score=37.38 Aligned_cols=149 Identities=19% Similarity=0.146 Sum_probs=83.0
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCcc--C------CCCCCceeECCCCc--EEEEeCC
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSE--E------KSTADDIAVDAEGN--AYVTDVV 173 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~------~~~p~~~~vd~~G~--lyV~d~~ 173 (335)
.|-.+- +|.||.--... ..|.+||+.++.+.....++..+- . ...--|+++|..|- ||.+...
T Consensus 77 tG~VVY--ngslYY~~~~s-----~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~ 149 (255)
T smart00284 77 TGVVVY--NGSLYFNKFNS-----HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN 149 (255)
T ss_pred ccEEEE--CceEEEEecCC-----ccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC
Confidence 466665 68888832222 359999999987764343432210 0 12224899999993 5555555
Q ss_pred CCeEE--EEccCCc-EEEEecCCccccccccccccccCeEEEccCCeEEEEECC---CCE-EEEEeCCCCceeEEEEecc
Q 039428 174 SSKIW--KVGVEGQ-LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC---SGN-LFKIDIRKEEEEVKLIELR 246 (335)
Q Consensus 174 ~~~I~--~~d~~g~-~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~---~~~-v~~~d~~~~~~~~~~~~~~ 246 (335)
.+.|. ++|++.- ....+...... ..-|=||---|.||++++. ..+ -+.+|+.+.++....+...
T Consensus 150 ~g~ivvSkLnp~tL~ve~tW~T~~~k---------~sa~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i~f~ 220 (255)
T smart00284 150 AGKIVISKLNPATLTIENTWITTYNK---------RSASNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDIPFE 220 (255)
T ss_pred CCCEEEEeeCcccceEEEEEEcCCCc---------ccccccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeeeeec
Confidence 56555 7888653 23334322111 1223355556999999862 233 4888988763222223322
Q ss_pred CCcCCCCCCeEEEcCCC-cEEEEec
Q 039428 247 GGSSLSLGDGLALLSPT-KLVVAGN 270 (335)
Q Consensus 247 g~~~~~~pdGia~d~~g-~l~va~~ 270 (335)
. . ...-.-+...|.. .||+=++
T Consensus 221 n-~-y~~~s~l~YNP~d~~LY~wdn 243 (255)
T smart00284 221 N-M-YEYISMLDYNPNDRKLYAWNN 243 (255)
T ss_pred c-c-cccceeceeCCCCCeEEEEeC
Confidence 2 1 1223346677654 6887777
No 226
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=94.82 E-value=2.4 Score=36.72 Aligned_cols=206 Identities=11% Similarity=0.118 Sum_probs=108.4
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEE--ECCCCCCCcceeeeeEEeecCCcCCCCcceEEE--eCC-CCeEEEEEecCCCC
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQV--LVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAV--DRP-RNRLLVAFTDVLGN 125 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~--d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~--d~~-~g~l~v~~~D~~~~ 125 (335)
-.+.+|+|.|.++.+...+..|-++ +..+-+..+ .+..+.-.. +....+++ ++. .+.|.+. + ..++
T Consensus 92 iyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g---~dle~nmhd----gtirdl~fld~~~s~~~il~s-~-gagd 162 (350)
T KOG0641|consen 92 IYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATG---HDLEFNMHD----GTIRDLAFLDDPESGGAILAS-A-GAGD 162 (350)
T ss_pred EEEEEecCccCeEEecCCCceEEEEecccccccccC---cceeeeecC----CceeeeEEecCCCcCceEEEe-c-CCCc
Confidence 3577999999987777666665444 321111100 000011111 12334444 222 3455552 2 2222
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCC-cEEEEecCCcccccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~ 203 (335)
-.|+.-|-..|+....... . .-.=++.-. +|-++++.+....|.-+|..= .-+..+++ .|...+ -.
T Consensus 163 --c~iy~tdc~~g~~~~a~sg--h-----tghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~-~~~~~g--le 230 (350)
T KOG0641|consen 163 --CKIYITDCGRGQGFHALSG--H-----TGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN-DFHDGG--LE 230 (350)
T ss_pred --ceEEEeecCCCCcceeecC--C-----cccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccC-cccCCC--cc
Confidence 2366666555543311110 0 000133323 366888888877787777642 22333332 222110 00
Q ss_pred ccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 204 VFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
......++++|.|+|+++......-..+|+.++. .++.+--.. ....-+.+.|.-.+..+....+.+++.++..
T Consensus 231 ssavaav~vdpsgrll~sg~~dssc~lydirg~r-~iq~f~phs----adir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 231 SSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGR-MIQRFHPHS----ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred cceeEEEEECCCcceeeeccCCCceEEEEeeCCc-eeeeeCCCc----cceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 1236789999999999998888888889998874 556553211 2245677877656556655457788777643
No 227
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=94.81 E-value=1.7 Score=40.26 Aligned_cols=147 Identities=15% Similarity=0.185 Sum_probs=86.9
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d 181 (335)
....|...+ +|..++.. ..++ +.|.+||+++++-...... +.....-+...|||..+++-+-.+....++
T Consensus 197 pVtsmqwn~-dgt~l~tA--S~gs--ssi~iWdpdtg~~~pL~~~-----glgg~slLkwSPdgd~lfaAt~davfrlw~ 266 (445)
T KOG2139|consen 197 PVTSMQWNE-DGTILVTA--SFGS--SSIMIWDPDTGQKIPLIPK-----GLGGFSLLKWSPDGDVLFAATCDAVFRLWQ 266 (445)
T ss_pred eeeEEEEcC-CCCEEeec--ccCc--ceEEEEcCCCCCccccccc-----CCCceeeEEEcCCCCEEEEecccceeeeeh
Confidence 457777775 67777742 2233 4699999998865422211 133444588999998777755544333332
Q ss_pred cC-CcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCc-------e--eEEEE-ec----
Q 039428 182 VE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEE-------E--EVKLI-EL---- 245 (335)
Q Consensus 182 ~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~-------~--~~~~~-~~---- 245 (335)
-. ....+ +|...+ ....+-+++|+| +|+++-.+.-+||++.-.++. + ....+ ++
T Consensus 267 e~q~wt~e----rw~lgs------grvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~t 336 (445)
T KOG2139|consen 267 ENQSWTKE----RWILGS------GRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVT 336 (445)
T ss_pred hcccceec----ceeccC------CceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhh
Confidence 22 11111 233221 147788999999 899999999999998765531 0 11111 11
Q ss_pred --cCCc-CCCCCCeEEEcCCCcEEEE
Q 039428 246 --RGGS-SLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 246 --~g~~-~~~~pdGia~d~~g~l~va 268 (335)
.++. ..+.+.-||.||.|...+.
T Consensus 337 i~ag~~l~cgeaq~lawDpsGeyLav 362 (445)
T KOG2139|consen 337 ICAGQRLCCGEAQCLAWDPSGEYLAV 362 (445)
T ss_pred hhcCcccccCccceeeECCCCCEEEE
Confidence 1111 1245889999999964444
No 228
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=94.81 E-value=1.1 Score=42.28 Aligned_cols=175 Identities=10% Similarity=0.057 Sum_probs=106.7
Q ss_pred EEEcCCCcceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEe
Q 039428 42 YQYHSPSFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFT 120 (335)
Q Consensus 42 ~~~~~~~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~ 120 (335)
+.+.+-..-..|++|.+.-.-...+ ..+++|..||.......++++..+....... .....+++.+....+|...+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~---~~VeDV~~h~~h~~lF~sv~ 247 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHE---DVVEDVAWHPLHEDLFGSVG 247 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCC---cceehhhccccchhhheeec
Confidence 3444433346688998887666666 6678888887432221000111111221111 24567788877788888766
Q ss_pred cCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccCCcEEEEecCCcccccc
Q 039428 121 DVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKE 199 (335)
Q Consensus 121 D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~ 199 (335)
|. ..+..+|.++++........ +. ....|-+++.|- +.+..+.+..++|..+|+..-...+. .|..
T Consensus 248 dd-----~~L~iwD~R~~~~~~~~~~~--ah-~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh---~~e~-- 314 (422)
T KOG0264|consen 248 DD-----GKLMIWDTRSNTSKPSHSVK--AH-SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLH---TFEG-- 314 (422)
T ss_pred CC-----CeEEEEEcCCCCCCCccccc--cc-CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCce---eccC--
Confidence 54 46999999864211111111 11 345677999986 57888888899999999863221110 1111
Q ss_pred ccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCC
Q 039428 200 WYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~ 235 (335)
.......+.++|.. .++.+....+++.+.|+..
T Consensus 315 ---H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 315 ---HEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred ---CCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 11236788999987 8888888899999999876
No 229
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.77 E-value=0.2 Score=30.82 Aligned_cols=41 Identities=17% Similarity=0.162 Sum_probs=28.5
Q ss_pred CCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeEC
Q 039428 111 PRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVD 162 (335)
Q Consensus 111 ~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd 162 (335)
++++|||++.+ . +.|.++|+.+++....+.. ...|.+++++
T Consensus 2 d~~~lyv~~~~--~---~~v~~id~~~~~~~~~i~v------g~~P~~i~~~ 42 (42)
T TIGR02276 2 DGTKLYVTNSG--S---NTVSVIDTATNKVIATIPV------GGYPFGVAVS 42 (42)
T ss_pred CCCEEEEEeCC--C---CEEEEEECCCCeEEEEEEC------CCCCceEEeC
Confidence 46789996432 2 4699999998877755554 3467777764
No 230
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=94.76 E-value=4.3 Score=39.28 Aligned_cols=150 Identities=14% Similarity=0.122 Sum_probs=91.0
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEec
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIR 191 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~ 191 (335)
.+.|||.+ +. +.|+.=..+.+.... ... . ....++++..|+.+.|++......+..++ +-+....
T Consensus 339 ~~di~vGT--tr----N~iL~Gt~~~~f~~~-v~g----h-~delwgla~hps~~q~~T~gqdk~v~lW~-~~k~~wt-- 403 (626)
T KOG2106|consen 339 KGDILVGT--TR----NFILQGTLENGFTLT-VQG----H-GDELWGLATHPSKNQLLTCGQDKHVRLWN-DHKLEWT-- 403 (626)
T ss_pred CCcEEEee--cc----ceEEEeeecCCceEE-EEe----c-ccceeeEEcCCChhheeeccCcceEEEcc-CCceeEE--
Confidence 45588843 22 346665555543321 111 1 23678999999999999988877777777 3333211
Q ss_pred CCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC
Q 039428 192 SPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP 271 (335)
Q Consensus 192 ~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~ 271 (335)
..+..| .....|+|.| ....-+..|+.+++|.... ....+...+ .+ -.-|++.++|..+..+..
T Consensus 404 -~~~~d~--------~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~--~lv~~~~d~-~~---ls~v~ysp~G~~lAvgs~ 467 (626)
T KOG2106|consen 404 -KIIEDP--------AECADFHPSG-VVAVGTATGRWFVLDTETQ--DLVTIHTDN-EQ---LSVVRYSPDGAFLAVGSH 467 (626)
T ss_pred -EEecCc--------eeEeeccCcc-eEEEeeccceEEEEecccc--eeEEEEecC-Cc---eEEEEEcCCCCEEEEecC
Confidence 011111 5677888888 5556667899999998875 333333323 21 356888888876666555
Q ss_pred CCeEEEEEcCCCcEEEEEeee
Q 039428 272 YPSARLVESSDGWETASVVAK 292 (335)
Q Consensus 272 ~~~~~v~~~~~~~~~~~~~~~ 292 (335)
.|.+.+++.+++...-...+.
T Consensus 468 d~~iyiy~Vs~~g~~y~r~~k 488 (626)
T KOG2106|consen 468 DNHIYIYRVSANGRKYSRVGK 488 (626)
T ss_pred CCeEEEEEECCCCcEEEEeee
Confidence 577888877655333333333
No 231
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.66 E-value=3.4 Score=37.63 Aligned_cols=150 Identities=14% Similarity=0.131 Sum_probs=92.2
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC--cEEEEeCCCCeEEE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG--NAYVTDVVSSKIWK 179 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G--~lyV~d~~~~~I~~ 179 (335)
....++++ + .|++++ +.+ ..|..||+........ +... ....+.+.|++.- +-.++.+..|.|..
T Consensus 45 sitavAVs---~-~~~aSG--ssD--etI~IYDm~k~~qlg~--ll~H---agsitaL~F~~~~S~shLlS~sdDG~i~i 111 (362)
T KOG0294|consen 45 SITALAVS---G-PYVASG--SSD--ETIHIYDMRKRKQLGI--LLSH---AGSITALKFYPPLSKSHLLSGSDDGHIII 111 (362)
T ss_pred ceeEEEec---c-eeEecc--CCC--CcEEEEeccchhhhcc--eecc---ccceEEEEecCCcchhheeeecCCCcEEE
Confidence 45677775 3 566533 223 3599999976533211 1111 3455667777653 25566778888888
Q ss_pred EccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEE
Q 039428 180 VGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLAL 259 (335)
Q Consensus 180 ~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~ 259 (335)
++.+.-. . + .++.. .....|+|++.|.|.|-.+-.+++.+.-.++-.++ ...+..+. ..+.-+.+
T Consensus 112 w~~~~W~-~-~--~slK~-----H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr-~a~v~~L~-----~~at~v~w 176 (362)
T KOG0294|consen 112 WRVGSWE-L-L--KSLKA-----HKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR-VAFVLNLK-----NKATLVSW 176 (362)
T ss_pred EEcCCeE-E-e--eeecc-----cccccceeEecCCCceEEEEcCCceeeeehhhcCc-cceeeccC-----CcceeeEE
Confidence 8776432 1 1 12221 12348999999999998888888888777776653 33333332 23667999
Q ss_pred cCCCc-EEEEecCCCeEEEEEcC
Q 039428 260 LSPTK-LVVAGNPYPSARLVESS 281 (335)
Q Consensus 260 d~~g~-l~va~~~~~~~~v~~~~ 281 (335)
++.|. .+|... +.+-+...+
T Consensus 177 ~~~Gd~F~v~~~--~~i~i~q~d 197 (362)
T KOG0294|consen 177 SPQGDHFVVSGR--NKIDIYQLD 197 (362)
T ss_pred cCCCCEEEEEec--cEEEEEecc
Confidence 99997 444444 667666654
No 232
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=94.53 E-value=4.6 Score=38.65 Aligned_cols=79 Identities=11% Similarity=0.145 Sum_probs=50.6
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-.+++|..+|+++.+...+|.+..|+. +|.- +. .+.... .....+.... .|+..++ ++.. ..+
T Consensus 238 VT~L~Wn~~G~~LatG~~~G~~riw~~-~G~l----~~--tl~~Hk----gPI~slKWnk-~G~yilS-~~vD----~tt 300 (524)
T KOG0273|consen 238 VTSLDWNNDGTLLATGSEDGEARIWNK-DGNL----IS--TLGQHK----GPIFSLKWNK-KGTYILS-GGVD----GTT 300 (524)
T ss_pred cceEEecCCCCeEEEeecCcEEEEEec-Cchh----hh--hhhccC----CceEEEEEcC-CCCEEEe-ccCC----ccE
Confidence 468999999999999988999999974 5651 11 121111 2346788874 5544332 3332 358
Q ss_pred EEEECCCCeEEEEeec
Q 039428 131 AAYDLSTWKRLFLTQL 146 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~ 146 (335)
..||..+++......+
T Consensus 301 ilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 301 ILWDAHTGTVKQQFEF 316 (524)
T ss_pred EEEeccCceEEEeeee
Confidence 8899988877643333
No 233
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.53 E-value=3.2 Score=36.89 Aligned_cols=158 Identities=15% Similarity=0.210 Sum_probs=85.1
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-|+-|.- -|+..++.-.++.+|.++..+|.. ... +...... . .--..|.+.|.+|..+-| +..
T Consensus 55 iE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~----~w~--f~~~~~v---k-~~a~~d~~~glIycgshd------~~~ 117 (354)
T KOG4649|consen 55 IECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQ----IWN--FVILETV---K-VRAQCDFDGGLIYCGSHD------GNF 117 (354)
T ss_pred eeeeeEE-ECCEEEEEEccCcEEEEEecchhh----eee--eeehhhh---c-cceEEcCCCceEEEecCC------CcE
Confidence 3444443 355556667788999998766641 111 1111111 1 122356567889995433 248
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCCCCeEEEEccCCc-EEEEec----CCccccccccccc
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQ-LLSIIR----SPLFTAKEWYKNV 204 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~-~~~~~~----~~~~~~~~~~~~~ 204 (335)
+.+|+.+..-++...-. ......-++++ +|.+|++ ...|++.+++++.. ..+++. .+.|..| ..
T Consensus 118 yalD~~~~~cVykskcg-----G~~f~sP~i~~g~~sly~a-~t~G~vlavt~~~~~~~~~w~~~~~~PiF~sp----lc 187 (354)
T KOG4649|consen 118 YALDPKTYGCVYKSKCG-----GGTFVSPVIAPGDGSLYAA-ITAGAVLAVTKNPYSSTEFWAATRFGPIFASP----LC 187 (354)
T ss_pred EEecccccceEEecccC-----CceeccceecCCCceEEEE-eccceEEEEccCCCCcceehhhhcCCccccCc----ee
Confidence 89999876544332221 22333456777 7899998 45688889887643 222221 1333332 11
Q ss_pred cccCeEEEc-cCCeEEEEECCCCEEEEEeCCCC
Q 039428 205 FGLNGIVYH-PDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 205 ~~p~Gia~~-~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
.++ .+.+. =||+|.--+....+|||+...+.
T Consensus 188 v~~-sv~i~~VdG~l~~f~~sG~qvwr~~t~Gp 219 (354)
T KOG4649|consen 188 VGS-SVIITTVDGVLTSFDESGRQVWRPATKGP 219 (354)
T ss_pred ccc-eEEEEEeccEEEEEcCCCcEEEeecCCCc
Confidence 222 22222 26766655555578888776664
No 234
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=94.50 E-value=2.1 Score=40.37 Aligned_cols=135 Identities=13% Similarity=0.142 Sum_probs=61.6
Q ss_pred hcCCCce--eEEEcC-----CCcceeeeEEcCCCCEEEEE-ec--CCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCc
Q 039428 34 MAKPATH--VYQYHS-----PSFLCETAKWDDVGRRFLVS-FL--DGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNAT 103 (335)
Q Consensus 34 ~~d~~~~--~~~~~~-----~~~~pegia~d~~g~~~~~~-~~--~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p 103 (335)
|.|+.++ .++|.. ..+|...-+|.++|+.++.. .. +..++.+|..+++ +. ++-..++ ...
T Consensus 14 ~~D~~TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~-----i~--QLTdg~g---~~~ 83 (386)
T PF14583_consen 14 WIDPDTGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE-----IT--QLTDGPG---DNT 83 (386)
T ss_dssp EE-TTT--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E-----EE--E---SS----B-T
T ss_pred EeCCCCCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCE-----EE--ECccCCC---CCc
Confidence 4566653 244432 23566777889999766555 22 3579999976554 22 2322222 223
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCc-eeECCCCcEEEEeC----------
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADD-IAVDAEGNAYVTDV---------- 172 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~-~~vd~~G~lyV~d~---------- 172 (335)
.|..+.+++..+|.. .+. ..|+++|+++.+......++.. .. ..+ ..++.|++.++...
T Consensus 84 ~g~~~s~~~~~~~Yv-~~~-----~~l~~vdL~T~e~~~vy~~p~~---~~-g~gt~v~n~d~t~~~g~e~~~~d~~~l~ 153 (386)
T PF14583_consen 84 FGGFLSPDDRALYYV-KNG-----RSLRRVDLDTLEERVVYEVPDD---WK-GYGTWVANSDCTKLVGIEISREDWKPLT 153 (386)
T ss_dssp TT-EE-TTSSEEEEE-ETT-----TEEEEEETTT--EEEEEE--TT---EE-EEEEEEE-TTSSEEEEEEEEGGG-----
T ss_pred cceEEecCCCeEEEE-ECC-----CeEEEEECCcCcEEEEEECCcc---cc-cccceeeCCCccEEEEEEEeehhccCcc
Confidence 466677766665432 322 3599999999877655555321 11 122 23466777766421
Q ss_pred ------------CCCeEEEEccCCcEEE
Q 039428 173 ------------VSSKIWKVGVEGQLLS 188 (335)
Q Consensus 173 ------------~~~~I~~~d~~g~~~~ 188 (335)
...+|+++|.++...+
T Consensus 154 ~~~~f~e~~~a~p~~~i~~idl~tG~~~ 181 (386)
T PF14583_consen 154 KWKGFREFYEARPHCRIFTIDLKTGERK 181 (386)
T ss_dssp SHHHHHHHHHC---EEEEEEETTT--EE
T ss_pred ccHHHHHHHhhCCCceEEEEECCCCcee
Confidence 1368999998755444
No 235
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.47 E-value=6.2 Score=39.84 Aligned_cols=103 Identities=16% Similarity=0.148 Sum_probs=55.4
Q ss_pred CCCCCceeECCCCc--EEEEe------CCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEEC
Q 039428 153 KSTADDIAVDAEGN--AYVTD------VVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHM 223 (335)
Q Consensus 153 ~~~p~~~~vd~~G~--lyV~d------~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~ 223 (335)
...+...++.++|+ +|+.. .....||+.+.++....+..... ...-.|+||| .||+...
T Consensus 349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~------------~t~PsWspDG~~lw~v~d 416 (591)
T PRK13616 349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHS------------LTRPSWSLDADAVWVVVD 416 (591)
T ss_pred ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCC------------CCCceECCCCCceEEEec
Confidence 34678899999985 56652 23568898887665433221111 2344788886 6766532
Q ss_pred C-----------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEE
Q 039428 224 C-----------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARL 277 (335)
Q Consensus 224 ~-----------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v 277 (335)
. .+++++++.+++ ..+. ... ..+..+.+.+||. +.+... +++.|
T Consensus 417 g~~~~~v~~~~~~gql~~~~vd~g--e~~~-~~~-----g~Issl~wSpDG~RiA~i~~--g~v~V 472 (591)
T PRK13616 417 GNTVVRVIRDPATGQLARTPVDAS--AVAS-RVP-----GPISELQLSRDGVRAAMIIG--GKVYL 472 (591)
T ss_pred CcceEEEeccCCCceEEEEeccCc--hhhh-ccC-----CCcCeEEECCCCCEEEEEEC--CEEEE
Confidence 2 234554444443 1111 111 2366788888874 433332 34554
No 236
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=94.37 E-value=3.8 Score=43.50 Aligned_cols=189 Identities=15% Similarity=0.156 Sum_probs=114.3
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKV 180 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~ 180 (335)
....+.++..++.+|- +|.... .+.............. ..+.-.+.++++|-- +++|.+|.....|.+.
T Consensus 438 ~~~~~d~d~~~~~i~~--~d~~~~---~i~~~~~~~~~~~~~~-----~~g~~~~~~lavD~~~~~~y~tDe~~~~i~v~ 507 (877)
T KOG1215|consen 438 NAVALDFDVLNNRIYW--ADLSDE---KICRASQDGSSECELC-----GDGLCIPEGLAVDWIGDNIYWTDEGNCLIEVA 507 (877)
T ss_pred cceEEEEEecCCEEEE--EeccCC---eEeeeccCCCccceEe-----ccCccccCcEEEEeccCCceecccCCceeEEE
Confidence 3456666665677777 455432 3555544433322211 122577889999975 6899999999999999
Q ss_pred ccCCcEEEEecCCccccccccccccccCeEEEccC-CeEEEEECC-CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEE
Q 039428 181 GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPD-GFLIVIHMC-SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLA 258 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~d-g~Lyvad~~-~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia 258 (335)
+.+|....++-... ...|..++++|. |.+|.++.. ..+|.|-.+++. ....+...+ ...|.|++
T Consensus 508 ~~~g~~~~vl~~~~---------l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~--~~~~l~~~~---~~~p~glt 573 (877)
T KOG1215|consen 508 DLDGSSRKVLVSKD---------LDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGS--ERAVLVTNG---ILWPNGLT 573 (877)
T ss_pred EccCCceeEEEecC---------CCCccceeeccccCeeEEecCCCCchhhhhcCCCC--CceEEEeCC---ccCCCcce
Confidence 97776433221111 134899999995 599999988 446888777775 333332222 35699999
Q ss_pred EcCC-CcEEEEecCCC-eEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEeCCeEEEEeccCC
Q 039428 259 LLSP-TKLVVAGNPYP-SARLVESSDGWETASVVAKFNGPTHRVATAATVKDGRVYLSHLLGL 319 (335)
Q Consensus 259 ~d~~-g~l~va~~~~~-~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~~~~~~ 319 (335)
+|-. ..+|-++.... .+..+..+ +.... ... ......|-++++..+++|-+.+...
T Consensus 574 ~d~~~~~~yw~d~~~~~~i~~~~~~-g~~r~-~~~---~~~~~~p~~~~~~~~~iyw~d~~~~ 631 (877)
T KOG1215|consen 574 IDYETDRLYWADAKLDYTIESANMD-GQNRR-VVD---SEDLPHPFGLSVFEDYIYWTDWSNR 631 (877)
T ss_pred EEeecceeEEEcccCCcceeeeecC-CCceE-Eec---cccCCCceEEEEecceeEEeecccc
Confidence 9955 56777766333 23333332 21111 111 1123446688888888886555433
No 237
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.34 E-value=3.6 Score=38.55 Aligned_cols=135 Identities=13% Similarity=0.118 Sum_probs=78.0
Q ss_pred EEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeEC-CCC--cEEEEeC-CCCeEEEEccCCcEEEEe
Q 039428 115 LLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVD-AEG--NAYVTDV-VSSKIWKVGVEGQLLSII 190 (335)
Q Consensus 115 l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd-~~G--~lyV~d~-~~~~I~~~d~~g~~~~~~ 190 (335)
+++.-.+..... ..+..+|.++++......-...+- ........+- ++| -+|+++. +-..|+.++.+++..+.+
T Consensus 198 l~~~~~nR~q~~-~~l~~~d~~tg~~~~~~~e~~~~W-v~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~l 275 (353)
T PF00930_consen 198 LWVQWLNRDQNR-LDLVLCDASTGETRVVLEETSDGW-VDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQL 275 (353)
T ss_dssp EEEEEEETTSTE-EEEEEEEECTTTCEEEEEEESSSS-SSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEES
T ss_pred EEEEEcccCCCE-EEEEEEECCCCceeEEEEecCCcc-eeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceecc
Confidence 666544333222 567788887765432221111111 2333445543 554 3666663 235899999998876644
Q ss_pred cCCccccccccccccccC-eEEEccCC-eEEEEECC----CCEEEEEeCC-CCceeEEEEeccCCcCCCCCC-eEEEcCC
Q 039428 191 RSPLFTAKEWYKNVFGLN-GIVYHPDG-FLIVIHMC----SGNLFKIDIR-KEEEEVKLIELRGGSSLSLGD-GLALLSP 262 (335)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~-Gia~~~dg-~Lyvad~~----~~~v~~~d~~-~~~~~~~~~~~~g~~~~~~pd-Gia~d~~ 262 (335)
-.+.+. .+ =+.+++++ .||+.... ...||+++.+ ++ .++.+.-. .... .+.+.++
T Consensus 276 T~G~~~----------V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~--~~~~LT~~-----~~~~~~~~~Spd 338 (353)
T PF00930_consen 276 TSGDWE----------VTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGG--EPKCLTCE-----DGDHYSASFSPD 338 (353)
T ss_dssp S-SSS-----------EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETT--EEEESSTT-----SSTTEEEEE-TT
T ss_pred ccCcee----------ecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCC--CeEeccCC-----CCCceEEEECCC
Confidence 322222 22 46778876 88887765 4589999999 66 55555422 1234 7899999
Q ss_pred CcEEEE
Q 039428 263 TKLVVA 268 (335)
Q Consensus 263 g~l~va 268 (335)
|+.++-
T Consensus 339 g~y~v~ 344 (353)
T PF00930_consen 339 GKYYVD 344 (353)
T ss_dssp SSEEEE
T ss_pred CCEEEE
Confidence 987776
No 238
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=94.33 E-value=1.9 Score=40.46 Aligned_cols=135 Identities=14% Similarity=0.109 Sum_probs=82.3
Q ss_pred EEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEE
Q 039428 63 FLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRL 141 (335)
Q Consensus 63 ~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~ 141 (335)
.+++ ..+..|..||...... ..+.|. ++....+.+..++..|..+.-| +.+-++|..+.++.
T Consensus 314 ~~~SgH~DkkvRfwD~Rs~~~---------~~sv~~--gg~vtSl~ls~~g~~lLsssRD------dtl~viDlRt~eI~ 376 (459)
T KOG0288|consen 314 DVISGHFDKKVRFWDIRSADK---------TRSVPL--GGRVTSLDLSMDGLELLSSSRD------DTLKVIDLRTKEIR 376 (459)
T ss_pred eeeecccccceEEEeccCCce---------eeEeec--CcceeeEeeccCCeEEeeecCC------CceeeeecccccEE
Confidence 3444 5677899998432321 111222 2356677777645566664322 34889999988776
Q ss_pred EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEE-EecCCccccccccccccccCeEEEccCC-eEE
Q 039428 142 FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLS-IIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLI 219 (335)
Q Consensus 142 ~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~-~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Ly 219 (335)
......+.. ...-.+-+.|.|+|.+..+.+.+++|+.++..+...+ .+.... . ..+.+.++|++.| .|.
T Consensus 377 ~~~sA~g~k-~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~--s------~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 377 QTFSAEGFK-CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLST--S------NAAITSLSWNPSGSGLL 447 (459)
T ss_pred EEeeccccc-cccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCC--C------CcceEEEEEcCCCchhh
Confidence 333221111 1244677999999998889999999999998765544 222111 1 1147889999988 666
Q ss_pred EEEC
Q 039428 220 VIHM 223 (335)
Q Consensus 220 vad~ 223 (335)
-++.
T Consensus 448 sadk 451 (459)
T KOG0288|consen 448 SADK 451 (459)
T ss_pred cccC
Confidence 5543
No 239
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=94.32 E-value=4.5 Score=37.64 Aligned_cols=100 Identities=14% Similarity=-0.007 Sum_probs=49.3
Q ss_pred CCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC--CCcceEEEeCCCCeEEEEEecCCCC------ccce
Q 039428 59 VGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG--NATMGIAVDRPRNRLLVAFTDVLGN------KYSA 129 (335)
Q Consensus 59 ~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~--~~p~Gi~~d~~~g~l~v~~~D~~~~------~~~~ 129 (335)
++.+|++. .....++++|..... . .|...+.+.. ..-.++++- ++.|||...-.... ..+.
T Consensus 17 ~~~vyv~GG~~~~~~~~~d~~~~~------~--~W~~l~~~p~~~R~~~~~~~~--~~~iYv~GG~~~~~~~~~~~~~~~ 86 (346)
T TIGR03547 17 GDKVYVGLGSAGTSWYKLDLKKPS------K--GWQKIADFPGGPRNQAVAAAI--DGKLYVFGGIGKANSEGSPQVFDD 86 (346)
T ss_pred CCEEEEEccccCCeeEEEECCCCC------C--CceECCCCCCCCcccceEEEE--CCEEEEEeCCCCCCCCCcceeccc
Confidence 45666666 445678999842111 0 1433333321 222455554 68999974321100 1146
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeE-CCCCcEEEEeC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAV-DAEGNAYVTDV 172 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~v-d~~G~lyV~d~ 172 (335)
+.+||+.+++-...... .+ .......++ --+|.|||...
T Consensus 87 v~~Yd~~~~~W~~~~~~-~p---~~~~~~~~~~~~~g~IYviGG 126 (346)
T TIGR03547 87 VYRYDPKKNSWQKLDTR-SP---VGLLGASGFSLHNGQAYFTGG 126 (346)
T ss_pred EEEEECCCCEEecCCCC-CC---CcccceeEEEEeCCEEEEEcC
Confidence 89999988754422111 11 111111122 24688999754
No 240
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.32 E-value=0.58 Score=43.13 Aligned_cols=155 Identities=11% Similarity=0.166 Sum_probs=100.3
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE 183 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~ 183 (335)
..+.++|-.-.|+++.+ .+ ..|+.||...+..+..+-+ ...+|.|+..|++..|++......+|.+|..
T Consensus 191 ~svkfNpvETsILas~~---sD--rsIvLyD~R~~~Pl~KVi~------~mRTN~IswnPeafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 191 SSVKFNPVETSILASCA---SD--RSIVLYDLRQASPLKKVIL------TMRTNTICWNPEAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred eEEecCCCcchheeeec---cC--CceEEEecccCCccceeee------eccccceecCccccceeeccccccceehhhh
Confidence 56667764445555432 12 3599999988766533322 3578999999998888888888999999975
Q ss_pred CcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC
Q 039428 184 GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT 263 (335)
Q Consensus 184 g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g 263 (335)
--. +-+. .+. ........+.++|-|.=||+-+-+..|..|..+.+. ...+.-. ..++..-++.+..|.
T Consensus 260 ~l~-~p~~--v~~-----dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~-SRdiYht---kRMq~V~~Vk~S~Ds 327 (433)
T KOG0268|consen 260 NLS-RPLN--VHK-----DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-SRDIYHT---KRMQHVFCVKYSMDS 327 (433)
T ss_pred hhc-ccch--hhc-----ccceeEEEeccCCCcchhccccccceEEEeecCCCc-chhhhhH---hhhheeeEEEEeccc
Confidence 211 1000 011 011235678999999889998888988888888763 2222221 114456678888888
Q ss_pred cEEEEecCCCeEEEEEcC
Q 039428 264 KLVVAGNPYPSARLVESS 281 (335)
Q Consensus 264 ~l~va~~~~~~~~v~~~~ 281 (335)
..++++....++++....
T Consensus 328 kyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 328 KYIISGSDDGNVRLWKAK 345 (433)
T ss_pred cEEEecCCCcceeeeecc
Confidence 888886644557766543
No 241
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.19 E-value=3.3 Score=41.93 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=99.4
Q ss_pred cceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 49 FLCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
-|-.+|++.|-...||++ ..+++|..|+..+.+ |+. |....+ ..+.+++.|+ |..-|. +-..
T Consensus 410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~----Vv~---W~Dl~~----lITAvcy~Pd-Gk~avI-Gt~~---- 472 (712)
T KOG0283|consen 410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK----VVD---WNDLRD----LITAVCYSPD-GKGAVI-GTFN---- 472 (712)
T ss_pred CeeEEEEecccCCCcEeecccccceEEeecCcCe----eEe---ehhhhh----hheeEEeccC-CceEEE-EEec----
Confidence 367899999999999999 789999888866554 222 432232 4578999985 544443 2222
Q ss_pred ceEEEEECCCCeEEE--EeecCCCc-cCCCCCCceeECCCC--cEEEEeCCCCeEEEEccCCcEEEEecCCccccccccc
Q 039428 128 SALAAYDLSTWKRLF--LTQLSGKS-EEKSTADDIAVDAEG--NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~--~~~~~~~~-~~~~~p~~~~vd~~G--~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~ 202 (335)
+....|+..+.++.. .+...... .......|+.+.|.- ++.|| +...+|..+|...+.+. ..|....
T Consensus 473 G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVT-SnDSrIRI~d~~~~~lv----~KfKG~~--- 544 (712)
T KOG0283|consen 473 GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVT-SNDSRIRIYDGRDKDLV----HKFKGFR--- 544 (712)
T ss_pred cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEe-cCCCceEEEeccchhhh----hhhcccc---
Confidence 247788888777653 23332110 112357788887642 58887 56679999987433221 1222100
Q ss_pred cccccCeEEEccCCeEEEEECCCCEEEEEeCCC
Q 039428 203 NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~ 235 (335)
......--.|+.||.-+|+.+.+..||..+.+.
T Consensus 545 n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 545 NTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 112245567888996666666888888877643
No 242
>PHA03098 kelch-like protein; Provisional
Probab=94.18 E-value=4.6 Score=40.07 Aligned_cols=152 Identities=11% Similarity=-0.002 Sum_probs=77.7
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCCC-ccceEE
Q 039428 59 VGRRFLVSFLD-----GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLGN-KYSALA 131 (335)
Q Consensus 59 ~g~~~~~~~~~-----~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~-~~~~v~ 131 (335)
++.+|+++..+ +.+.++|+.+.+ |...+.+.. ......++. ++.|||..+-.... ..+.+.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~----------W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~ 409 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESK----------WREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVE 409 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCc----------eeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEE
Confidence 46677776322 468888854333 322222211 122344443 68999964311111 124689
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC--------CeEEEEccCCcEEEEecCCcccccccccc
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS--------SKIWKVGVEGQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~--------~~I~~~d~~g~~~~~~~~~~~~~~~~~~~ 203 (335)
+||+.+++-....+.+.+ ... ..++--++.+|+....+ ..++++|+....-..+.. ...
T Consensus 410 ~yd~~t~~W~~~~~~p~~---r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~--~~~------ 476 (534)
T PHA03098 410 CFSLNTNKWSKGSPLPIS---HYG--GCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS--LNF------ 476 (534)
T ss_pred EEeCCCCeeeecCCCCcc---ccC--ceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC--CCc------
Confidence 999988755432222111 111 12233467899975421 348999987544332211 111
Q ss_pred ccccCeEEEccCCeEEEEECC-----CCEEEEEeCCCC
Q 039428 204 VFGLNGIVYHPDGFLIVIHMC-----SGNLFKIDIRKE 236 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~~-----~~~v~~~d~~~~ 236 (335)
...-.+++.- ++.||+.... .+.++++|+...
T Consensus 477 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 477 PRINASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred ccccceEEEE-CCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 0112233333 6788886543 357888988876
No 243
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=94.07 E-value=5.3 Score=37.50 Aligned_cols=194 Identities=14% Similarity=0.132 Sum_probs=114.4
Q ss_pred EEEcCCCcceeeeEEcCCC-CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEe
Q 039428 42 YQYHSPSFLCETAKWDDVG-RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFT 120 (335)
Q Consensus 42 ~~~~~~~~~pegia~d~~g-~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~ 120 (335)
..+.+.+..-.-++|+|-- |++..+..++.|..|+..+|.. +- .+..|. ....+.++. +|.++++.+
T Consensus 125 v~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgea----li---~l~hpd----~i~S~sfn~-dGs~l~Ttc 192 (472)
T KOG0303|consen 125 VELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEA----LI---TLDHPD----MVYSMSFNR-DGSLLCTTC 192 (472)
T ss_pred EEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCce----ee---ecCCCC----eEEEEEecc-CCceeeeec
Confidence 3344444445567898874 4555557789999999765651 11 223343 457888885 788888643
Q ss_pred cCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC---CCeEEEEccCCcEEEEecCCcccc
Q 039428 121 DVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV---SSKIWKVGVEGQLLSIIRSPLFTA 197 (335)
Q Consensus 121 D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~---~~~I~~~d~~g~~~~~~~~~~~~~ 197 (335)
- + ..|.++|+.+++++.... +.....|.-+.+-.+|.++-|... ..++-.+|++.- ..
T Consensus 193 k---D--KkvRv~dpr~~~~v~e~~----~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl----------~e 253 (472)
T KOG0303|consen 193 K---D--KKVRVIDPRRGTVVSEGV----AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNL----------EE 253 (472)
T ss_pred c---c--ceeEEEcCCCCcEeeecc----cccCCCcceeEEeccCceeeeccccccccceeccCcccc----------cC
Confidence 2 2 369999999998874331 112456667778788886665432 334555555421 11
Q ss_pred ccccccccccCeE---EEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 198 KEWYKNVFGLNGI---VYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 198 ~~~~~~~~~p~Gi---a~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
|.....+-..||+ -+|+|. -+|++--+++.|.-|....+...+.-+...... .--.||.+-|...+=|.
T Consensus 254 P~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~--epQRG~g~mPKRGl~Vs 326 (472)
T KOG0303|consen 254 PIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK--EPQRGMGFMPKRGLDVS 326 (472)
T ss_pred cceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC--Cccccccccccccccch
Confidence 1111122346676 457776 789999999989888887762123323221111 11367888776555555
No 244
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.99 E-value=1.1 Score=41.69 Aligned_cols=137 Identities=15% Similarity=0.099 Sum_probs=86.1
Q ss_pred ceeeeEEcCC--CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 50 LCETAKWDDV--GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~--g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
++.++.|-+. ...|+....-+.+..+|+..++.| +.+++-. .+....+...+..+.||+ +++.+
T Consensus 204 W~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRP--------V~~fd~~-E~~is~~~l~p~gn~Iy~--gn~~g--- 269 (412)
T KOG3881|consen 204 WITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRP--------VAQFDFL-ENPISSTGLTPSGNFIYT--GNTKG--- 269 (412)
T ss_pred eeccceecCCCCCceEEEEecceeEEEecCcccCcc--------eeEeccc-cCcceeeeecCCCcEEEE--ecccc---
Confidence 5667777665 566666677789999997655532 3333321 234567777776778888 55553
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
.+..||.+++++... .+.+ . .+.+.++.++|.+.+..+.....-|..+|.+.+... ...|. ...+
T Consensus 270 -~l~~FD~r~~kl~g~-~~kg--~-tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll---~kvYv-------Ks~l 334 (412)
T KOG3881|consen 270 -QLAKFDLRGGKLLGC-GLKG--I-TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL---HKVYV-------KSRL 334 (412)
T ss_pred -hhheecccCceeecc-ccCC--c-cCCcceEEEcCCCceEEeeccceeEEEeecccchhh---hhhhh-------hccc
Confidence 499999998877621 1211 1 467788999999877777666666666777753221 11222 2347
Q ss_pred CeEEEccC
Q 039428 208 NGIVYHPD 215 (335)
Q Consensus 208 ~Gia~~~d 215 (335)
|+|.+.++
T Consensus 335 t~il~~~~ 342 (412)
T KOG3881|consen 335 TFILLRDD 342 (412)
T ss_pred cEEEecCC
Confidence 88888743
No 245
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=93.90 E-value=0.66 Score=45.83 Aligned_cols=182 Identities=15% Similarity=0.119 Sum_probs=94.4
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCc--eeEEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCC
Q 039428 5 LCFTKTLLFFFIISAIPIAYIISIELAIAMAKPAT--HVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYS 82 (335)
Q Consensus 5 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~--~~~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~ 82 (335)
|||+|+=-+++=+++.. +....|.+=|..+ ....+.+..-.--++||+|+|++......+++|.++.+..+..
T Consensus 680 I~slRfHPLAadvLa~a-----syd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 680 ITSLRFHPLAADVLAVA-----SYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred EEEEEecchhhhHhhhh-----hccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 67888776665554432 2344444434332 2223333334456999999999887778999999998643331
Q ss_pred CcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE-ecCCCCccceEEEEECCCCe--EE--EEeecCCCccCCCCCC
Q 039428 83 PGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF-TDVLGNKYSALAAYDLSTWK--RL--FLTQLSGKSEEKSTAD 157 (335)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~-~D~~~~~~~~v~~~d~~~~~--~~--~~~~~~~~~~~~~~p~ 157 (335)
++...++..+.+..-|.+-- +|++.++. .|.... .+|..||.++-. .+ ...+... + .-.
T Consensus 755 --------pv~Eg~gpvgtRgARi~wac-dgr~viv~Gfdk~Se--RQv~~Y~Aq~l~~~pl~t~~lDvap--s-~Lv-- 818 (1012)
T KOG1445|consen 755 --------PVYEGKGPVGTRGARILWAC-DGRIVIVVGFDKSSE--RQVQMYDAQTLDLRPLYTQVLDVAP--S-PLV-- 818 (1012)
T ss_pred --------ccccCCCCccCcceeEEEEe-cCcEEEEecccccch--hhhhhhhhhhccCCcceeeeecccC--c-ccc--
Confidence 23333333333333333332 45555543 233222 247777765422 11 2222211 1 111
Q ss_pred ceeECCC-CcEEEEeCCCCeEEEEcc--CCcEEEEecCCccccccccccccccCeEEEccCC
Q 039428 158 DIAVDAE-GNAYVTDVVSSKIWKVGV--EGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG 216 (335)
Q Consensus 158 ~~~vd~~-G~lyV~d~~~~~I~~~d~--~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg 216 (335)
--.|.| +.+|++..+...|+.+.. +.-...-+ ..|..| ..-.||+|-+..
T Consensus 819 -P~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl--~~f~sp------~~hqGl~fl~K~ 871 (1012)
T KOG1445|consen 819 -PHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPL--APFMSP------VGHQGLAFLQKL 871 (1012)
T ss_pred -ccccCCCceEEEecCCCceEEEEEecCCCceeeec--ccccCC------Ccccceeeeccc
Confidence 123666 568888888778877653 22222111 123332 236788888754
No 246
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=93.88 E-value=4.2 Score=35.71 Aligned_cols=132 Identities=12% Similarity=0.104 Sum_probs=80.7
Q ss_pred CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEE--eecCCCccCCCCCCceeECCC-CcEEEEeCCCCeE
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFL--TQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKI 177 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~--~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I 177 (335)
....||.+-|.+|.||... +. ++|+.+|+.++..... ..+...- .....++-|.|- .++.|. +..++=
T Consensus 27 e~l~GID~Rpa~G~LYgl~-~~-----g~lYtIn~~tG~aT~vg~s~~~~al--~g~~~gvDFNP~aDRlRvv-s~~GqN 97 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLG-ST-----GRLYTINPATGAATPVGASPLTVAL--SGTAFGVDFNPAADRLRVV-SNTGQN 97 (236)
T ss_pred CeEEEEEeecCCCCEEEEe-CC-----CcEEEEECCCCeEEEeecccccccc--cCceEEEecCcccCcEEEE-ccCCcE
Confidence 4568999999999999973 22 4699999999976543 2222111 123566777775 678876 335677
Q ss_pred EEEccCCcEEEEe-cCCccccccc-cccccccCeEEEccC------C-eEEEEECCCCEEEEE-eCCCCceeEEEE
Q 039428 178 WKVGVEGQLLSII-RSPLFTAKEW-YKNVFGLNGIVYHPD------G-FLIVIHMCSGNLFKI-DIRKEEEEVKLI 243 (335)
Q Consensus 178 ~~~d~~g~~~~~~-~~~~~~~~~~-~~~~~~p~Gia~~~d------g-~Lyvad~~~~~v~~~-d~~~~~~~~~~~ 243 (335)
+|++++....... +.-.+...+. .+......+.|+... . .||--|...++|++. .++.+ .+..+
T Consensus 98 lR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ppN~G--tL~~v 171 (236)
T PF14339_consen 98 LRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQNPPNDG--TLNTV 171 (236)
T ss_pred EEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEecCCCCC--cEEee
Confidence 8999985442211 1112221110 011233556676653 4 699999999999998 55555 44444
No 247
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=93.84 E-value=7.2 Score=38.27 Aligned_cols=155 Identities=18% Similarity=0.112 Sum_probs=81.9
Q ss_pred CCEEEEEe----cCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEEC
Q 039428 60 GRRFLVSF----LDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDL 135 (335)
Q Consensus 60 g~~~~~~~----~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~ 135 (335)
.+++++.. .....+.+| .+|. +. |....... ....+..-+ +|++++... ..+..+|.
T Consensus 114 ~gl~~~~~~~~~~~~~~~~iD-~~G~-----Vr---w~~~~~~~--~~~~~~~l~-nG~ll~~~~-------~~~~e~D~ 174 (477)
T PF05935_consen 114 DGLYFVNGNDWDSSSYTYLID-NNGD-----VR---WYLPLDSG--SDNSFKQLP-NGNLLIGSG-------NRLYEIDL 174 (477)
T ss_dssp T-EEEEEETT--BEEEEEEEE-TTS------EE---EEE-GGGT----SSEEE-T-TS-EEEEEB-------TEEEEE-T
T ss_pred CcEEEEeCCCCCCCceEEEEC-CCcc-----EE---EEEccCcc--ccceeeEcC-CCCEEEecC-------CceEEEcC
Confidence 34666665 346789998 4676 22 32111110 111155554 888888543 35999999
Q ss_pred CCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC-------------CCCeEEEEccCCcEEEEecCCc-cc---c-
Q 039428 136 STWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV-------------VSSKIWKVGVEGQLLSIIRSPL-FT---A- 197 (335)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~-------------~~~~I~~~d~~g~~~~~~~~~~-~~---~- 197 (335)
.+. +.+...++... ...-+|+...++|++++.-. ....|..+|+.|+.+..+.-.. |. .
T Consensus 175 ~G~-v~~~~~l~~~~--~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~ 251 (477)
T PF05935_consen 175 LGK-VIWEYDLPGGY--YDFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDT 251 (477)
T ss_dssp T---EEEEEE--TTE--E-B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--T
T ss_pred CCC-EEEeeecCCcc--cccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCccccc
Confidence 754 55445553210 13457999999998655322 2578999998898887754211 10 0
Q ss_pred ---c---------cccccccccCeEEEcc-CCeEEEEECCCCEEEEEeCCCC
Q 039428 198 ---K---------EWYKNVFGLNGIVYHP-DGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 198 ---~---------~~~~~~~~p~Gia~~~-dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
+ .....-...|+|.+++ ++.|+++.+....|++||..++
T Consensus 252 ~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~ 303 (477)
T PF05935_consen 252 VLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTG 303 (477)
T ss_dssp TGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS
T ss_pred ccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEECCCC
Confidence 0 0112235689999999 6699999999999999997766
No 248
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.76 E-value=2.2 Score=42.84 Aligned_cols=152 Identities=16% Similarity=0.199 Sum_probs=89.8
Q ss_pred EEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-C
Q 039428 106 IAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-G 184 (335)
Q Consensus 106 i~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g 184 (335)
+++++.+..||.++. +.|..+|.+++... .+.... +......++++++|+...++-..+..+..++.. |
T Consensus 25 ~~~s~nG~~L~t~~~-------d~Vi~idv~t~~~~--l~s~~~-ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tg 94 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACG-------DRVIIIDVATGSIA--LPSGSN-EDEDEITALALTPDEEVLVTASRSQLLRVWSLPTG 94 (775)
T ss_pred eeECCCCCEEEEecC-------ceEEEEEccCCcee--cccCCc-cchhhhheeeecCCccEEEEeeccceEEEEEcccc
Confidence 788874445555433 35999999998774 111111 225677889999998766665666666666654 4
Q ss_pred cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc
Q 039428 185 QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK 264 (335)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~ 264 (335)
+..+.+.. .-..| .-.++++|.|.|..+-...+++.+.|+.++. -...+...+ +...-+.+.++-+
T Consensus 95 k~irswKa-~He~P--------vi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-~th~fkG~g----GvVssl~F~~~~~ 160 (775)
T KOG0319|consen 95 KLIRSWKA-IHEAP--------VITMAFDPTGTLLATGGADGRVKVWDIKNGY-CTHSFKGHG----GVVSSLLFHPHWN 160 (775)
T ss_pred hHhHhHhh-ccCCC--------eEEEEEcCCCceEEeccccceEEEEEeeCCE-EEEEecCCC----ceEEEEEeCCccc
Confidence 44443221 01122 5688999999888888788999999998873 333443212 1234455555532
Q ss_pred --EEEEecCCCeEEEEEcC
Q 039428 265 --LVVAGNPYPSARLVESS 281 (335)
Q Consensus 265 --l~va~~~~~~~~v~~~~ 281 (335)
+.+++...+.+++.+..
T Consensus 161 ~~lL~sg~~D~~v~vwnl~ 179 (775)
T KOG0319|consen 161 RWLLASGATDGTVRVWNLN 179 (775)
T ss_pred hhheeecCCCceEEEEEcc
Confidence 23333333455555554
No 249
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=93.42 E-value=2.8 Score=38.11 Aligned_cols=193 Identities=13% Similarity=0.117 Sum_probs=105.5
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeec-CCcCC-CCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKE-DDVVG-NATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~-~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
-.++.++|.|..+.+...+..+..+|..+-+ -+++. |.... .....+..++ +++|||+. ... +
T Consensus 219 vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q---------cfvsanPd~qht~ai~~V~Ys~-t~~lYvTa-SkD----G 283 (430)
T KOG0640|consen 219 VRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ---------CFVSANPDDQHTGAITQVRYSS-TGSLYVTA-SKD----G 283 (430)
T ss_pred eeeEeecCCCceEEEecCCCceeEEecccee---------EeeecCcccccccceeEEEecC-CccEEEEe-ccC----C
Confidence 3799999999988888777888888754333 13322 22111 3456778885 89999963 222 3
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEE-EEecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLL-SIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~-~~~~~~~~~~~~~~~~~~~ 206 (335)
.|..||--+++-+.. +.. ..+....-...|..+|+...+......+..+... |+.+ ++.+.+ .+. .+...
T Consensus 284 ~IklwDGVS~rCv~t--~~~-AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg-~tg----rq~~r 355 (430)
T KOG0640|consen 284 AIKLWDGVSNRCVRT--IGN-AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAG-TTG----RQKHR 355 (430)
T ss_pred cEEeeccccHHHHHH--HHh-hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCC-ccc----chhhh
Confidence 488898655432211 111 1113445567788899776665444444434332 2332 222211 000 01122
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.+.+-=+.+.++++-|..++.+--.|..... .+..+.+ | + -+.+.-+.-.|.+-.|+++.
T Consensus 356 tqAvFNhtEdyVl~pDEas~slcsWdaRtad-r~~l~sl-g-H-n~a~R~i~HSP~~p~FmTcs 415 (430)
T KOG0640|consen 356 TQAVFNHTEDYVLFPDEASNSLCSWDARTAD-RVALLSL-G-H-NGAVRWIVHSPVEPAFMTCS 415 (430)
T ss_pred hhhhhcCccceEEccccccCceeeccccchh-hhhhccc-C-C-CCCceEEEeCCCCCceeeec
Confidence 3333323344777777788888877776642 3333433 2 1 12356666667666777755
No 250
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=93.24 E-value=1.3 Score=42.69 Aligned_cols=95 Identities=17% Similarity=0.304 Sum_probs=55.4
Q ss_pred ceeECCCCc-EEEEeC--CCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCC--EEEEE
Q 039428 158 DIAVDAEGN-AYVTDV--VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSG--NLFKI 231 (335)
Q Consensus 158 ~~~vd~~G~-lyV~d~--~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~--~v~~~ 231 (335)
.-++.|||+ +.++-. .+..||.+|.+++....+.+. + .. -..-.++||| +++++....+ +|+++
T Consensus 242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~-~--------gi-~~~Ps~spdG~~ivf~Sdr~G~p~I~~~ 311 (425)
T COG0823 242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNG-F--------GI-NTSPSWSPDGSKIVFTSDRGGRPQIYLY 311 (425)
T ss_pred CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccC-C--------cc-ccCccCCCCCCEEEEEeCCCCCcceEEE
Confidence 456778885 444322 456899999988775432110 0 01 1244788999 6655544433 79999
Q ss_pred eCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 232 DIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 232 d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
++++. .++.+...+.. ..--.+.++|..++-
T Consensus 312 ~~~g~--~~~riT~~~~~----~~~p~~SpdG~~i~~ 342 (425)
T COG0823 312 DLEGS--QVTRLTFSGGG----NSNPVWSPDGDKIVF 342 (425)
T ss_pred CCCCC--ceeEeeccCCC----CcCccCCCCCCEEEE
Confidence 99987 45555443322 223445677764444
No 251
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=93.24 E-value=11 Score=38.41 Aligned_cols=200 Identities=20% Similarity=0.230 Sum_probs=119.6
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCC--CCc---ceee--eeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEY--SPG---TVLE--EVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~--~~~---~v~~--~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
-+.++..|++.-+++...+.+|..||-. -. .|+ ++++ +.+.+..+ .....+.++| +|++.++. -.
T Consensus 457 IWsi~~~pD~~g~vT~saDktVkfWdf~-l~~~~~gt~~k~lsl~~~rtLel~----ddvL~v~~Sp-dgk~LaVs--LL 528 (888)
T KOG0306|consen 457 IWSISLSPDNKGFVTGSADKTVKFWDFK-LVVSVPGTQKKVLSLKHTRTLELE----DDVLCVSVSP-DGKLLAVS--LL 528 (888)
T ss_pred eeeeeecCCCCceEEecCCcEEEEEeEE-EEeccCcccceeeeeccceEEecc----ccEEEEEEcC-CCcEEEEE--ec
Confidence 4677888998877777778887766521 00 000 0010 00111122 2356888887 67766642 11
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCC-CceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccccccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTA-DDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWY 201 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p-~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~ 201 (335)
. +.+.+|=.++-+.. ..+-+ ...| --|-+.+|..+.||.+....|-.+-.+ |.-.+ ..|.-
T Consensus 529 d---nTVkVyflDtlKFf--lsLYG----HkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHK----S~fAH---- 591 (888)
T KOG0306|consen 529 D---NTVKVYFLDTLKFF--LSLYG----HKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHK----SFFAH---- 591 (888)
T ss_pred c---CeEEEEEecceeee--eeecc----cccceeEEeccCCcCeEEeccCCCceEEeccccchhhh----hhhcc----
Confidence 1 24666666654433 22211 1222 346677899999998876666666554 32221 11220
Q ss_pred ccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 202 KNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.-....+.|-|+.++|++-...++|...|-..-+ ..+.+. + + .....-+++.++|.+.|+.....+++...-.
T Consensus 592 --dDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe-~iq~L~--~-H-~~ev~cLav~~~G~~vvs~shD~sIRlwE~t 664 (888)
T KOG0306|consen 592 --DDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE-EIQKLD--G-H-HSEVWCLAVSPNGSFVVSSSHDKSIRLWERT 664 (888)
T ss_pred --cCceeEEEEcccceeEEEecCcceEEeechhhhh-hheeec--c-c-hheeeeeEEcCCCCeEEeccCCceeEeeecc
Confidence 1125678999988999999999999998876542 334443 3 2 2447889999999999987755677776654
Q ss_pred C
Q 039428 282 D 282 (335)
Q Consensus 282 ~ 282 (335)
+
T Consensus 665 d 665 (888)
T KOG0306|consen 665 D 665 (888)
T ss_pred C
Confidence 4
No 252
>PLN02193 nitrile-specifier protein
Probab=93.23 E-value=9 Score=37.49 Aligned_cols=196 Identities=13% Similarity=0.121 Sum_probs=95.1
Q ss_pred cceEEEeCCCCeEEEEEecCC-CC-ccceEEEEECCCCeEEEEeecCCCccCCCCCCcee-ECCCCcEEEEeCC-----C
Q 039428 103 TMGIAVDRPRNRLLVAFTDVL-GN-KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIA-VDAEGNAYVTDVV-----S 174 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~-~~-~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~-vd~~G~lyV~d~~-----~ 174 (335)
-++.++. ++.||+...... .. ..+.+++||+++.+-.. .......+ .....+.+ +--++.+||.... .
T Consensus 168 ~h~~~~~--~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P-~~~~~~~~~v~~~~~lYvfGG~~~~~~~ 243 (470)
T PLN02193 168 SHGIAQV--GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVP-HLSCLGVRMVSIGSTLYVFGGRDASRQY 243 (470)
T ss_pred ccEEEEE--CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCC-CCcccceEEEEECCEEEEECCCCCCCCC
Confidence 3555555 578998633111 11 11358999998865432 11110000 00111221 2235679997432 3
Q ss_pred CeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECC-----CCEEEEEeCCCCceeEEEEeccCCc
Q 039428 175 SKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC-----SGNLFKIDIRKEEEEVKLIELRGGS 249 (335)
Q Consensus 175 ~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~-----~~~v~~~d~~~~~~~~~~~~~~g~~ 249 (335)
+.++++|+....-..+.. ... .+....-..++.. ++.|||.-.. .+.++++|+... ....+...+..
T Consensus 244 ndv~~yD~~t~~W~~l~~--~~~---~P~~R~~h~~~~~-~~~iYv~GG~~~~~~~~~~~~yd~~t~--~W~~~~~~~~~ 315 (470)
T PLN02193 244 NGFYSFDTTTNEWKLLTP--VEE---GPTPRSFHSMAAD-EENVYVFGGVSATARLKTLDSYNIVDK--KWFHCSTPGDS 315 (470)
T ss_pred ccEEEEECCCCEEEEcCc--CCC---CCCCccceEEEEE-CCEEEEECCCCCCCCcceEEEEECCCC--EEEeCCCCCCC
Confidence 579999998654332211 000 0111122344443 6688886432 246888998876 44444322211
Q ss_pred CC-CCCCeEEEcCCCcEEEEecC----CCeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEEeCCeEEE
Q 039428 250 SL-SLGDGLALLSPTKLVVAGNP----YPSARLVESSDG-WETASVVAKFNGPTHRVATAATVKDGRVYL 313 (335)
Q Consensus 250 ~~-~~pdGia~d~~g~l~va~~~----~~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV 313 (335)
.. ..-..+++. ++++|+.... .+.+.+++...+ |......+.. |..+.-.+++.-+++|||
T Consensus 316 ~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~--P~~R~~~~~~~~~~~iyv 382 (470)
T PLN02193 316 FSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVR--PSERSVFASAAVGKHIVI 382 (470)
T ss_pred CCCCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCC--CCCcceeEEEEECCEEEE
Confidence 00 111234433 5788887431 255777877655 7654332222 222222234445788887
No 253
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=93.23 E-value=0.12 Score=31.54 Aligned_cols=22 Identities=41% Similarity=0.629 Sum_probs=18.6
Q ss_pred CCCCceeECCCCcEEEEeCCCC
Q 039428 154 STADDIAVDAEGNAYVTDVVSS 175 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~ 175 (335)
..+++|++|++|++||+...++
T Consensus 13 ~~~~~IavD~~GNiYv~G~T~~ 34 (38)
T PF06739_consen 13 DYGNGIAVDSNGNIYVTGYTNG 34 (38)
T ss_pred eeEEEEEECCCCCEEEEEeecC
Confidence 5689999999999999976544
No 254
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=93.18 E-value=5.9 Score=35.28 Aligned_cols=150 Identities=16% Similarity=0.131 Sum_probs=80.8
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC--------CCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 59 VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV--------GNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 59 ~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~--------~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
+|.+||-.....+|.++|..++. +..+ ..+...... +..-..+++| .+-|||.-+.......-.|
T Consensus 78 ngslYY~~~~s~~IvkydL~t~~----v~~~-~~L~~A~~~n~~~y~~~~~t~iD~AvD--E~GLWvIYat~~~~g~ivv 150 (250)
T PF02191_consen 78 NGSLYYNKYNSRNIVKYDLTTRS----VVAR-RELPGAGYNNRFPYYWSGYTDIDFAVD--ENGLWVIYATEDNNGNIVV 150 (250)
T ss_pred CCcEEEEecCCceEEEEECcCCc----EEEE-EECCccccccccceecCCCceEEEEEc--CCCEEEEEecCCCCCcEEE
Confidence 46677776778899999965443 2212 122111111 0122567777 4559987554332211457
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC---CeE-EEEccCCcEEEEecCCccccccccccccc
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS---SKI-WKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~---~~I-~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.++|+++-+++...+..-.. ...-|...+ =|.||++++.. .+| +.+|...+......- .|.. ....
T Consensus 151 skld~~tL~v~~tw~T~~~k--~~~~naFmv--CGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i-~f~~-----~~~~ 220 (250)
T PF02191_consen 151 SKLDPETLSVEQTWNTSYPK--RSAGNAFMV--CGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI-PFPN-----PYGN 220 (250)
T ss_pred EeeCcccCceEEEEEeccCc--hhhcceeeE--eeEEEEEEECCCCCcEEEEEEECCCCceeceee-eecc-----ccCc
Confidence 78999887776444332111 122222222 38899998764 333 567776443322111 1221 2234
Q ss_pred cCeEEEccC-CeEEEEECCC
Q 039428 207 LNGIVYHPD-GFLIVIHMCS 225 (335)
Q Consensus 207 p~Gia~~~d-g~Lyvad~~~ 225 (335)
...|.++|. ..||+-|.+.
T Consensus 221 ~~~l~YNP~dk~LY~wd~G~ 240 (250)
T PF02191_consen 221 ISMLSYNPRDKKLYAWDNGY 240 (250)
T ss_pred eEeeeECCCCCeEEEEECCe
Confidence 778899995 4899887543
No 255
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.11 E-value=7.1 Score=35.95 Aligned_cols=116 Identities=13% Similarity=0.094 Sum_probs=58.6
Q ss_pred CCCEEEEEecC-----CeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 59 VGRRFLVSFLD-----GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 59 ~g~~~~~~~~~-----~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
++.+|++...+ ..++++|..+..+ + ..+...+.+.. ..-.+.++. ++.|||......+...+.+.+
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w-----~-~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~ 143 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKE-----E-LICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYL 143 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCce-----e-eeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEE
Confidence 45677776321 4688888543321 0 01222232221 122344444 689999743211111256999
Q ss_pred EECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC----CeEEEEccCCcE
Q 039428 133 YDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS----SKIWKVGVEGQL 186 (335)
Q Consensus 133 ~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~----~~I~~~d~~g~~ 186 (335)
||+.+.+-....+.+. . .+....++--++++||..... ..++++|++...
T Consensus 144 yd~~~~~W~~~~~~p~--~--~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~ 197 (323)
T TIGR03548 144 FNLETQEWFELPDFPG--E--PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQ 197 (323)
T ss_pred EcCCCCCeeECCCCCC--C--CCCcceEEEECCEEEEEcCCCCccccceEEEecCCCe
Confidence 9998775442222211 1 122223333467899975432 346788887544
No 256
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=7.7 Score=36.31 Aligned_cols=141 Identities=14% Similarity=0.139 Sum_probs=86.9
Q ss_pred ceEEEEECCCCeEEEEe-ecCCCccC---CCCCCceeECCC--CcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccc
Q 039428 128 SALAAYDLSTWKRLFLT-QLSGKSEE---KSTADDIAVDAE--GNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWY 201 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~-~~~~~~~~---~~~p~~~~vd~~--G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~ 201 (335)
+.+-.||++..+.+|.+ +++..--+ +-.+.|+.|-+. .+-+++-+..+.+..+|+.-+..-+. .|...
T Consensus 173 n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~---~fd~~--- 246 (412)
T KOG3881|consen 173 NELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVA---QFDFL--- 246 (412)
T ss_pred cceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCccee---Eeccc---
Confidence 45778888877655443 22211001 355678888776 68999999999999999874322111 11110
Q ss_pred ccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 202 KNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
-.....+++.|+| .+|+++ ..++|..||.++++ .... ...| . -+.+.++-.++.+.+..+..=..-+||.+.
T Consensus 247 --E~~is~~~l~p~gn~Iy~gn-~~g~l~~FD~r~~k-l~g~-~~kg-~-tGsirsih~hp~~~~las~GLDRyvRIhD~ 319 (412)
T KOG3881|consen 247 --ENPISSTGLTPSGNFIYTGN-TKGQLAKFDLRGGK-LLGC-GLKG-I-TGSIRSIHCHPTHPVLASCGLDRYVRIHDI 319 (412)
T ss_pred --cCcceeeeecCCCcEEEEec-ccchhheecccCce-eecc-ccCC-c-cCCcceEEEcCCCceEEeeccceeEEEeec
Confidence 1225678899999 778777 46789999999873 2222 1222 1 245889999987776555432233666654
Q ss_pred C
Q 039428 281 S 281 (335)
Q Consensus 281 ~ 281 (335)
.
T Consensus 320 k 320 (412)
T KOG3881|consen 320 K 320 (412)
T ss_pred c
Confidence 3
No 257
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.08 E-value=0.9 Score=47.55 Aligned_cols=211 Identities=13% Similarity=0.154 Sum_probs=114.4
Q ss_pred eeeEEcCCCCE---EEEE-ecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 52 ETAKWDDVGRR---FLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 52 egia~d~~g~~---~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
..++|.+-|.. ++++ ..+|.|.-||+. .-..+ .+..++. ..... +...|+.|++.++++.+..++.
T Consensus 68 ~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~-~~~~~---~~~~~la~~~~h~-G~V~gLDfN~~q~nlLASGa~~---- 138 (1049)
T KOG0307|consen 68 NKLAWGSYGSHSHGLIAGGLEDGNIVLYDPA-SIIAN---ASEEVLATKSKHT-GPVLGLDFNPFQGNLLASGADD---- 138 (1049)
T ss_pred eeeeecccCCCccceeeccccCCceEEecch-hhccC---cchHHHhhhcccC-CceeeeeccccCCceeeccCCC----
Confidence 56788777766 3444 778999999853 31000 0001221 11111 3568999998777787742221
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC----cEEEEeCCCCeEEEEccCCcEEEEecCCccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG----NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G----~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~ 202 (335)
+.|+.||+..-+.-+ .. + ....+.+|.+-... .++.+.+.++++..+|.+.+... + .+.. .+
T Consensus 139 -geI~iWDlnn~~tP~--~~---~-~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pi-i---~ls~---~~ 204 (1049)
T KOG0307|consen 139 -GEILIWDLNKPETPF--TP---G-SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPI-I---KLSD---TP 204 (1049)
T ss_pred -CcEEEeccCCcCCCC--CC---C-CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcc-c---cccc---CC
Confidence 469999987522111 11 1 14566777766543 47888888899999998866322 1 1111 01
Q ss_pred cccccCeEEEccCC--eEEEEECCCC--EEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEE
Q 039428 203 NVFGLNGIVYHPDG--FLIVIHMCSG--NLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARL 277 (335)
Q Consensus 203 ~~~~p~Gia~~~dg--~Lyvad~~~~--~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v 277 (335)
.....++|+|+|++ +|+++...++ .|...|++-.....+.+.. + -.+.-.|.+.+.+ ++.+++..++++.+
T Consensus 205 ~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~---H-~~GilslsWc~~D~~lllSsgkD~~ii~ 280 (1049)
T KOG0307|consen 205 GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEG---H-QRGILSLSWCPQDPRLLLSSGKDNRIIC 280 (1049)
T ss_pred CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcc---c-ccceeeeccCCCCchhhhcccCCCCeeE
Confidence 11346799999998 6666654433 3444454332112233321 1 1234566666665 66666664444433
Q ss_pred EEcCCCcEEEEEeeee
Q 039428 278 VESSDGWETASVVAKF 293 (335)
Q Consensus 278 ~~~~~~~~~~~~~~~~ 293 (335)
.... ++|+++++
T Consensus 281 wN~~----tgEvl~~~ 292 (1049)
T KOG0307|consen 281 WNPN----TGEVLGEL 292 (1049)
T ss_pred ecCC----CceEeeec
Confidence 3332 34555544
No 258
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.04 E-value=7.2 Score=35.89 Aligned_cols=119 Identities=15% Similarity=0.109 Sum_probs=60.0
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeE--EEEeecCCCccCCCCCCceeECCCCcEEEEeCC-----CCeEEEEccCC
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKR--LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-----SSKIWKVGVEG 184 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~--~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-----~~~I~~~d~~g 184 (335)
++.||+..........+.+.+||+++.+- .+. ..+... ...-+..++--++++||.... ...++++|+..
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~-~~~~lp--~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~ 148 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICE-TIGNLP--FTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLET 148 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeee-EcCCCC--cCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCC
Confidence 57899864321111125688999877653 111 121111 111122223346789997542 35789999875
Q ss_pred cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCC----CEEEEEeCCCCceeEEEE
Q 039428 185 QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCS----GNLFKIDIRKEEEEVKLI 243 (335)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~----~~v~~~d~~~~~~~~~~~ 243 (335)
..-..+. .+.. . ......+..-++.|||.-..+ ..++++|+... ....+
T Consensus 149 ~~W~~~~--~~p~-----~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~--~W~~~ 201 (323)
T TIGR03548 149 QEWFELP--DFPG-----E-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN--QWQKV 201 (323)
T ss_pred CCeeECC--CCCC-----C-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC--eeEEC
Confidence 4322111 1110 0 112223334467899875432 24688999876 44444
No 259
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=92.95 E-value=6.4 Score=41.59 Aligned_cols=205 Identities=11% Similarity=0.081 Sum_probs=114.3
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEE
Q 039428 55 KWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYD 134 (335)
Q Consensus 55 a~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d 134 (335)
.|-.+...++++.....|..||. +.+. + ....|--+...+..+.-|-.+|+++++.-+. +.|..||
T Consensus 1172 dWqQ~~G~Ll~tGd~r~IRIWDa-~~E~---~-----~~diP~~s~t~vTaLS~~~~~gn~i~AGfaD-----GsvRvyD 1237 (1387)
T KOG1517|consen 1172 DWQQQSGHLLVTGDVRSIRIWDA-HKEQ---V-----VADIPYGSSTLVTALSADLVHGNIIAAGFAD-----GSVRVYD 1237 (1387)
T ss_pred ehhhhCCeEEecCCeeEEEEEec-ccce---e-----EeecccCCCccceeecccccCCceEEEeecC-----CceEEee
Confidence 45555556667655678899985 4541 1 2222322334567777765567787753211 3589999
Q ss_pred CCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEc
Q 039428 135 LSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYH 213 (335)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~ 213 (335)
.+.-.....++...+.........+.+-+.|. =.|+.+.+|.|+.+|........+-+...... -+.....|.+.
T Consensus 1238 ~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~----yGs~lTal~VH 1313 (1387)
T KOG1517|consen 1238 RRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWE----YGSALTALTVH 1313 (1387)
T ss_pred cccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccc----cCccceeeeec
Confidence 75432211111111111111256777777774 37888999999999998743221100000000 01126678888
Q ss_pred cCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCC---cCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 214 PDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG---SSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 214 ~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~---~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
++--++.+-+. ..|..++..++ ....+...+. .....+.-+++.|..-+.++++..+.+.++..
T Consensus 1314 ~hapiiAsGs~-q~ikIy~~~G~--~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1314 EHAPIIASGSA-QLIKIYSLSGE--QLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSC 1380 (1387)
T ss_pred cCCCeeeecCc-ceEEEEecChh--hhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeec
Confidence 77778777655 88888899887 3333322111 11234677888887766666664455665543
No 260
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.67 E-value=15 Score=38.60 Aligned_cols=122 Identities=14% Similarity=0.127 Sum_probs=75.7
Q ss_pred CCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEe
Q 039428 154 STADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKID 232 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d 232 (335)
+-..|++-+|++.+.++-+..++|..++... +.++++.. ....+-|++|||-|+-+.+.++++.|..++
T Consensus 130 ~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~----------H~s~VKGvs~DP~Gky~ASqsdDrtikvwr 199 (942)
T KOG0973|consen 130 SDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG----------HQSLVKGVSWDPIGKYFASQSDDRTLKVWR 199 (942)
T ss_pred CccceeccCCCccEEEEecccceEEEEccccceeeeeeec----------ccccccceEECCccCeeeeecCCceEEEEE
Confidence 4556788999999999999999999998763 22232221 112378999999998888999998887777
Q ss_pred CCCCceeEEEEeccCC-cCC-CCCCeEEEcCCCcEEEE-ec---CCCeEEEEEcCCCcEEE
Q 039428 233 IRKEEEEVKLIELRGG-SSL-SLGDGLALLSPTKLVVA-GN---PYPSARLVESSDGWETA 287 (335)
Q Consensus 233 ~~~~~~~~~~~~~~g~-~~~-~~pdGia~d~~g~l~va-~~---~~~~~~v~~~~~~~~~~ 287 (335)
+..-+ ....+.-+-+ .++ ..-.-+...|||..+++ +. +...+.++. .+.|+..
T Consensus 200 t~dw~-i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~Iie-R~tWk~~ 258 (942)
T KOG0973|consen 200 TSDWG-IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIE-RGTWKVD 258 (942)
T ss_pred cccce-eeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEe-cCCceee
Confidence 65531 2233321100 000 11234556788886666 22 223455554 3557743
No 261
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.44 E-value=9.7 Score=35.83 Aligned_cols=197 Identities=11% Similarity=0.173 Sum_probs=107.3
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
..+|+..+|.++-+...+|.+.+|+-|.-.. .+.... .......|.+++ ++.+.+.... ....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t---------~l~e~~-~~~eV~DL~FS~-dgk~lasig~------d~~~ 210 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLT---------ILEEIA-HHAEVKDLDFSP-DGKFLASIGA------DSAR 210 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchh---------hhhhHh-hcCccccceeCC-CCcEEEEecC------CceE
Confidence 4678888887777666678777776233331 111111 113467899997 7766664331 1367
Q ss_pred EEECCCCeEE-EEeecCCCccCCCCCCceeECCCC---cEEEEeCC--CCeEEEEccC---C-cEEEEecCCcccccccc
Q 039428 132 AYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEG---NAYVTDVV--SSKIWKVGVE---G-QLLSIIRSPLFTAKEWY 201 (335)
Q Consensus 132 ~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G---~lyV~d~~--~~~I~~~d~~---g-~~~~~~~~~~~~~~~~~ 201 (335)
+|+.+++..+ ...+. .+.....-..+..|+ .+|++... .+.|...+.. + +..+ +.. ..
T Consensus 211 VW~~~~g~~~a~~t~~----~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~-----~~~---~~ 278 (398)
T KOG0771|consen 211 VWSVNTGAALARKTPF----SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR-----LRK---KI 278 (398)
T ss_pred EEEeccCchhhhcCCc----ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccc-----hhh---hh
Confidence 7888777333 11111 111222334444443 67776543 3444443221 1 1111 000 01
Q ss_pred ccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 202 KNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
........++++.||++..--+.+|.|..++...-+ ..+.++-. + .....++++.|+-+....-...+...|+...
T Consensus 279 ~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq-~~~~vk~a--H-~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~ 354 (398)
T KOG0771|consen 279 KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ-RLQYVKEA--H-LGFVTGLTFSPDSRYLASVSSDNEAAVTKLA 354 (398)
T ss_pred hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceee-eeEeehhh--h-eeeeeeEEEcCCcCcccccccCCceeEEEEe
Confidence 123457899999999766666679999999887643 44444321 2 3357899999987654442223556665543
No 262
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=92.40 E-value=4.2 Score=40.45 Aligned_cols=205 Identities=14% Similarity=0.099 Sum_probs=114.2
Q ss_pred EEcCCCCE-EEEEecCCeEEEEECCCCCCCcceeeeeEEeecC---CcC--CCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 55 KWDDVGRR-FLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKED---DVV--GNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 55 a~d~~g~~-~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~---~~~--~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
-.|..++. +|.+..++.|..|+.. ..+ . ..+.+ .+. -.+.+.|+.--....|.-|+.|+
T Consensus 31 q~da~~~ryLfTgGRDg~i~~W~~~-~d~-----~---~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDt------ 95 (735)
T KOG0308|consen 31 QLDAPNGRYLFTGGRDGIIRLWSVT-QDS-----N---EPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDT------ 95 (735)
T ss_pred cccCCCCceEEecCCCceEEEeccc-ccc-----C---CcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCc------
Confidence 34555555 5555889999999742 221 0 10111 000 02456666553233555554554
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeE-CCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccc--cccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAV-DAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKE--WYKNVF 205 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~v-d~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~--~~~~~~ 205 (335)
.|..|+...+-......+ +....+..-++. .++..++++....++|+.+|.+....+...+-....-. ..+...
T Consensus 96 TVK~W~~~~~~~~c~sti---r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDNTFCMSTI---RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCcchhHhhh---hcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 588898865431111112 111345556776 56677999988899999999875433211110000000 012233
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
....+|..+.|.++|+-...+-|..+|+...+ ++..+.| + -....-+.+++||+=.++....+.|++.++..
T Consensus 173 siYSLA~N~t~t~ivsGgtek~lr~wDprt~~---kimkLrG-H-TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq 244 (735)
T KOG0308|consen 173 SIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCK---KIMKLRG-H-TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ 244 (735)
T ss_pred ceeeeecCCcceEEEecCcccceEEecccccc---ceeeeec-c-ccceEEEEEcCCCCeEeecCCCceEEeeeccc
Confidence 46778888888999998888888888998864 2333334 2 13356777888886555533235677766653
No 263
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=92.38 E-value=5.3 Score=37.36 Aligned_cols=164 Identities=16% Similarity=0.098 Sum_probs=87.4
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
..+..++.+++++++++.....+.+.++- .++.++ .+ +...-.. ..++..+.+..+.-.+.| .|..++. .
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~-~~~~~~--~k---l~~~~~v-~~~~~ai~~~~~~~sv~v--~dkagD~-~ 132 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDY-RENPKG--AK---LLDVSCV-PKRPTAISFIREDTSVLV--ADKAGDV-Y 132 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEE-ecCCCc--ce---eeeEeec-ccCcceeeeeeccceEEE--EeecCCc-e
Confidence 35677888899998888855656544442 122100 11 2211110 136778887754555555 4655441 1
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
.+..+....+..+ +..+. .....|+++.+|+...++--....|++....+.... ..++.+ ......
T Consensus 133 ~~di~s~~~~~~~-----~~lGh-vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~I---esfclG-----H~eFVS 198 (390)
T KOG3914|consen 133 SFDILSADSGRCE-----PILGH-VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVI---ESFCLG-----HKEFVS 198 (390)
T ss_pred eeeeecccccCcc-----hhhhh-hhhhheeeecCCCCEEEEecCCceEEEEecCcccch---hhhccc-----cHhhee
Confidence 2223322222211 01122 578889999999875555333345555544332221 011110 122356
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCCCCc
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIRKEE 237 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~~~~ 237 (335)
.|++. +++++.+..+++.|+..|+..++
T Consensus 199 ~isl~-~~~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 199 TISLT-DNYLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred eeeec-cCceeeecCCCCcEEEEecccCC
Confidence 78888 55666777888888888888764
No 264
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=92.25 E-value=5.6 Score=41.61 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=78.5
Q ss_pred CCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCC-------cccc-ccccccccccCeEEEccCCeEEEEECC
Q 039428 154 STADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSP-------LFTA-KEWYKNVFGLNGIVYHPDGFLIVIHMC 224 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~-------~~~~-~~~~~~~~~p~Gia~~~dg~Lyvad~~ 224 (335)
.-.+-+.+.+||..+.+.+...-|.++.... .....+++. .... --......-..-++++|++.++++-.-
T Consensus 70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~ 149 (942)
T KOG0973|consen 70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSL 149 (942)
T ss_pred CceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecc
Confidence 3445567889997666666655555554441 111111110 0000 000111223677899999999999999
Q ss_pred CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEE
Q 039428 225 SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETA 287 (335)
Q Consensus 225 ~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~ 287 (335)
.++|..++....+ ...++. + + ...+-|+.+||-|+.+.+......+.|.+..+ |...
T Consensus 150 DnsViiwn~~tF~-~~~vl~--~-H-~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d-w~i~ 206 (942)
T KOG0973|consen 150 DNSVIIWNAKTFE-LLKVLR--G-H-QSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD-WGIE 206 (942)
T ss_pred cceEEEEccccce-eeeeee--c-c-cccccceEECCccCeeeeecCCceEEEEEccc-ceee
Confidence 9999999988763 444444 2 2 24488999999999888866556788777543 4443
No 265
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=91.91 E-value=6 Score=39.41 Aligned_cols=164 Identities=14% Similarity=0.211 Sum_probs=94.9
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcC-C--CCcceEEEeCCCCeEEEEEecCCCC
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV-G--NATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~-~--~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
|-.++|+-.+.+-++++ ..+++|+.||...+.. +.+.....++..... | .+...++.++ ++.++|. ++..
T Consensus 119 YVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~--~l~~s~n~~t~~sl~sG~k~siYSLA~N~-t~t~ivs-Ggte-- 192 (735)
T KOG0308|consen 119 YVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA--TLVASFNNVTVNSLGSGPKDSIYSLAMNQ-TGTIIVS-GGTE-- 192 (735)
T ss_pred hheeeeecccCceeEEecCCCccEEEEEccCcch--hhhhhccccccccCCCCCccceeeeecCC-cceEEEe-cCcc--
Confidence 66788885555556666 7789999999654420 000000001111111 1 2346777774 6777774 4443
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
.-|..||+.+++.+.... +. -.....+.+++||+-.++.+..+.|..+|..-+. .+. .+.. ...
T Consensus 193 --k~lr~wDprt~~kimkLr--GH---TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQr-Cl~---T~~v-----H~e 256 (735)
T KOG0308|consen 193 --KDLRLWDPRTCKKIMKLR--GH---TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQR-CLA---TYIV-----HKE 256 (735)
T ss_pred --cceEEeccccccceeeee--cc---ccceEEEEEcCCCCeEeecCCCceEEeeeccccc-eee---eEEe-----ccC
Confidence 348899999887653222 11 2456679999999988888889999999986332 110 1111 011
Q ss_pred ccCeEEEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 206 GLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
+.-.+..+++= .+|..+ ..+.|+|-|+...
T Consensus 257 ~VWaL~~~~sf~~vYsG~-rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGG-RDGNIYRTDLRNP 287 (735)
T ss_pred ceEEEeeCCCcceEEecC-CCCcEEecccCCc
Confidence 23445555554 555444 4566888887774
No 266
>smart00284 OLF Olfactomedin-like domains.
Probab=91.82 E-value=9.1 Score=34.15 Aligned_cols=155 Identities=17% Similarity=0.199 Sum_probs=80.7
Q ss_pred CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC--------CCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 60 GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV--------GNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 60 g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~--------~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
|.+||--..+..|.++|..... +..+ +.+...+.. +..-..+++| .+-|||.-+-..+...-.|.
T Consensus 84 gslYY~~~~s~~iiKydL~t~~----v~~~-~~Lp~a~y~~~~~Y~~~~~sdiDlAvD--E~GLWvIYat~~~~g~ivvS 156 (255)
T smart00284 84 GSLYFNKFNSHDICRFDLTTET----YQKE-PLLNGAGYNNRFPYAWGGFSDIDLAVD--ENGLWVIYATEQNAGKIVIS 156 (255)
T ss_pred ceEEEEecCCccEEEEECCCCc----EEEE-EecCccccccccccccCCCccEEEEEc--CCceEEEEeccCCCCCEEEE
Confidence 5666654567899999965443 2221 222111111 1123567777 45589875422221112456
Q ss_pred EEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC---CCe-EEEEccCCcEEEEecCCcccccccccccccc
Q 039428 132 AYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV---SSK-IWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 132 ~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~---~~~-I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
++|+.+-+++...+..-+. ...-|...+. |.||++++. ..+ -+.+|..+.......- .|.. .....
T Consensus 157 kLnp~tL~ve~tW~T~~~k--~sa~naFmvC--GvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i-~f~n-----~y~~~ 226 (255)
T smart00284 157 KLNPATLTIENTWITTYNK--RSASNAFMIC--GILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI-PFEN-----MYEYI 226 (255)
T ss_pred eeCcccceEEEEEEcCCCc--ccccccEEEe--eEEEEEccCCCCCcEEEEEEECCCCccceeee-eecc-----ccccc
Confidence 8999888777555443221 1222333332 899999862 233 4567776543321110 1211 12335
Q ss_pred CeEEEccC-CeEEEEECCCCEEEEEeC
Q 039428 208 NGIVYHPD-GFLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 208 ~Gia~~~d-g~Lyvad~~~~~v~~~d~ 233 (335)
..|.+.|. ..||+-| ++.+..+++
T Consensus 227 s~l~YNP~d~~LY~wd--ng~~l~Y~v 251 (255)
T smart00284 227 SMLDYNPNDRKLYAWN--NGHLVHYDI 251 (255)
T ss_pred eeceeCCCCCeEEEEe--CCeEEEEEE
Confidence 67889994 4899876 444555543
No 267
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.81 E-value=18 Score=37.67 Aligned_cols=111 Identities=14% Similarity=0.132 Sum_probs=68.5
Q ss_pred CCCceeECCCCcEEEEeCCCC--eEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEe
Q 039428 155 TADDIAVDAEGNAYVTDVVSS--KIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKID 232 (335)
Q Consensus 155 ~p~~~~vd~~G~lyV~d~~~~--~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d 232 (335)
..|=++|.|---++|+.+... .+||.+.. +. |+.... .+...+..++-++|...|+++++.++.|.+.|
T Consensus 208 GVNwaAfhpTlpliVSG~DDRqVKlWrmnet-Ka---WEvDtc-----rgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 208 GVNWAAFHPTLPLIVSGADDRQVKLWRMNET-KA---WEVDTC-----RGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred ccceEEecCCcceEEecCCcceeeEEEeccc-cc---eeehhh-----hcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 344456665555666655433 34444332 11 111111 12345688999999999999999999999999
Q ss_pred CCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 233 IRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 233 ~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
.+..+ .++.+....++ -+=+|..|..+||.|+-. +++.|+..
T Consensus 279 m~kRt-~v~tfrrendR----FW~laahP~lNLfAAgHD-sGm~VFkl 320 (1202)
T KOG0292|consen 279 MTKRT-SVQTFRRENDR----FWILAAHPELNLFAAGHD-SGMIVFKL 320 (1202)
T ss_pred ccccc-ceeeeeccCCe----EEEEEecCCcceeeeecC-CceEEEEE
Confidence 99875 56666543322 456777788888888542 33455544
No 268
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=91.75 E-value=14 Score=36.24 Aligned_cols=203 Identities=15% Similarity=0.101 Sum_probs=95.4
Q ss_pred eEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec-------CC-CC
Q 039428 54 AKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD-------VL-GN 125 (335)
Q Consensus 54 ia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D-------~~-~~ 125 (335)
+-.-++|++++... ..+.++|. .|+ ++.+ ...++..-..-+.+...+ +|++++.... .. .-
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~-~G~----v~~~---~~l~~~~~~~HHD~~~l~-nGn~L~l~~~~~~~~~~~~~~~ 221 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDL-LGK----VIWE---YDLPGGYYDFHHDIDELP-NGNLLILASETKYVDEDKDVDT 221 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-T-T------EEEE---EE--TTEE-B-S-EEE-T-TS-EEEEEEETTEE-TS-EE--
T ss_pred eeEcCCCCEEEecC--CceEEEcC-CCC----EEEe---eecCCcccccccccEECC-CCCEEEEEeecccccCCCCccE
Confidence 44566676665543 67888874 465 2222 122321001136788886 6776665441 11 00
Q ss_pred ccceEEEEECCCCeEEEEeecCCCc---c-------------------CCCCCCceeECC-CCcEEEEeCCCCeEEEEc-
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKS---E-------------------EKSTADDIAVDA-EGNAYVTDVVSSKIWKVG- 181 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~---~-------------------~~~~p~~~~vd~-~G~lyV~d~~~~~I~~~d- 181 (335)
....|+.+| .+|++++..++...- . .-...|.+..|+ ++.++++......|+++|
T Consensus 222 ~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~ 300 (477)
T PF05935_consen 222 VEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRHQSAVIKIDY 300 (477)
T ss_dssp -S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETTT-EEEEEE-
T ss_pred ecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCcceEEEEEEC
Confidence 014699999 788887665432110 0 014567899998 678999988889999999
Q ss_pred cCCcEEEEecCCccc---------cc------------cccccccccCeEEEccCC---eEEEEECCC------------
Q 039428 182 VEGQLLSIIRSPLFT---------AK------------EWYKNVFGLNGIVYHPDG---FLIVIHMCS------------ 225 (335)
Q Consensus 182 ~~g~~~~~~~~~~~~---------~~------------~~~~~~~~p~Gia~~~dg---~Lyvad~~~------------ 225 (335)
..++....++.+..- .| +.-....+.+...+.++| .|++=|-+.
T Consensus 301 ~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH~~~~~~~g~~~~l~vFDNg~~r~~~~~~~~~~ 380 (477)
T PF05935_consen 301 RTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQHTAHLIPDGPQGNLLVFDNGNGRGYGQPAYVSP 380 (477)
T ss_dssp TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-EEEEE-TTS---SEEEEE--TTGGGS--SSCCG
T ss_pred CCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCcccccccceEEcCCCCeEEEEEEECCCCCCCCCcccccc
Confidence 456665566543111 11 111122356788888888 887766432
Q ss_pred ----CEE--EEEeCCCCceeEE-EEeccCC--cCC--CCCCeEEEcCC-CcEEEEec
Q 039428 226 ----GNL--FKIDIRKEEEEVK-LIELRGG--SSL--SLGDGLALLSP-TKLVVAGN 270 (335)
Q Consensus 226 ----~~v--~~~d~~~~~~~~~-~~~~~g~--~~~--~~pdGia~d~~-g~l~va~~ 270 (335)
.|+ |++|.+.. +++ ++..... ..+ ..--++..-++ |++++...
T Consensus 381 ~~~~Sr~v~Y~Ide~~~--T~~~vw~y~~~~g~~~yS~~~s~aq~l~n~gn~li~~g 435 (477)
T PF05935_consen 381 KDNYSRAVEYRIDENKM--TVEQVWEYGKPRGNEFYSPIVSSAQYLPNKGNTLITSG 435 (477)
T ss_dssp -----EEEEEEEETTTT--EEEEEEEESGGGGGGG--SS--EEEEETTTTEEEEEEE
T ss_pred ccccceEEEEEecCCCc--eEEEEEEeCCCCCCCccCCcceeeEEecCCCCEEEEeC
Confidence 134 55666554 333 3322110 111 23345666677 78777733
No 269
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.58 E-value=16 Score=36.50 Aligned_cols=153 Identities=12% Similarity=0.105 Sum_probs=92.8
Q ss_pred EEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEE
Q 039428 55 KWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYD 134 (335)
Q Consensus 55 a~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d 134 (335)
.+-+.-+.++++..+..|.+++-.+++. +. .+-..+. -...|+++| ..-...++.|. ..|..||
T Consensus 62 kfiaRknWiv~GsDD~~IrVfnynt~ek----V~--~FeAH~D----yIR~iavHP-t~P~vLtsSDD-----m~iKlW~ 125 (794)
T KOG0276|consen 62 KFIARKNWIVTGSDDMQIRVFNYNTGEK----VK--TFEAHSD----YIRSIAVHP-TLPYVLTSSDD-----MTIKLWD 125 (794)
T ss_pred eeeeccceEEEecCCceEEEEeccccee----eE--Eeecccc----ceeeeeecC-CCCeEEecCCc-----cEEEEee
Confidence 4444445555557788888887544441 22 1332333 346899998 44343433332 3577788
Q ss_pred CCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEc
Q 039428 135 LSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYH 213 (335)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~ 213 (335)
.+.+..- ...+++ . .++...+++.|+. +-|++.+...+|-++...... +.|+-. +...+.|.+.+-
T Consensus 126 we~~wa~-~qtfeG--H-~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~------~nfTl~---gHekGVN~Vdyy 192 (794)
T KOG0276|consen 126 WENEWAC-EQTFEG--H-EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH------PNFTLE---GHEKGVNCVDYY 192 (794)
T ss_pred ccCceee-eeEEcC--c-ceEEEEEEecCCCccceeeeeccccEEEEEcCCCC------Cceeee---ccccCcceEEec
Confidence 8755322 122322 2 4788899999974 799998888888777765332 223321 234579999999
Q ss_pred cCC-e-EEEEECCCCEEEEEeCCCC
Q 039428 214 PDG-F-LIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 214 ~dg-~-Lyvad~~~~~v~~~d~~~~ 236 (335)
+.| . -.++-..++.|.+.|..+.
T Consensus 193 ~~gdkpylIsgaDD~tiKvWDyQtk 217 (794)
T KOG0276|consen 193 TGGDKPYLISGADDLTIKVWDYQTK 217 (794)
T ss_pred cCCCcceEEecCCCceEEEeecchH
Confidence 877 3 3356666777777787764
No 270
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=91.47 E-value=8.9 Score=35.17 Aligned_cols=197 Identities=10% Similarity=0.095 Sum_probs=106.7
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECC-CCCCCcceeeeeEEeecCCcC-CCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVP-DEYSPGTVLEEVKLVKEDDVV-GNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~-~g~~~~~v~~~~~~~~~~~~~-~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
...++++++||..+|.. .++.|.+||.. .|+. ....+........ .....-++++|.+-..+++ ...+++
T Consensus 160 aAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~----c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~--gsY~q~- 231 (406)
T KOG2919|consen 160 AAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRD----CPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAV--GSYGQR- 231 (406)
T ss_pred hheeEEecCCCCeEeec-ccceEEEeeccCCCCC----CcchhhhhcccccccceeeeeeccCCCCcceee--ecccce-
Confidence 46799999999988877 47789999742 1331 1100111111110 0234567788755556664 233332
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
+-.|.-..+....... +. .+....+...++|+ +|+.-.....|..+|..-.... .+.-.........
T Consensus 232 --~giy~~~~~~pl~llg----gh-~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p-----v~~L~rhv~~TNQ 299 (406)
T KOG2919|consen 232 --VGIYNDDGRRPLQLLG----GH-GGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP-----VYALERHVGDTNQ 299 (406)
T ss_pred --eeeEecCCCCceeeec----cc-CCCeeeEEeccCcCeecccccCCCeEEEEeehhccch-----hhhhhhhccCccc
Confidence 3344444444443221 11 45666788899997 6665556789999987532111 1110000000011
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
--=.-++|+|+.+++-...|.|.+.|+++.+..+.++.... ....|+++.|.=-+..+..
T Consensus 300 RI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s----d~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 300 RILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS----DTVNGVSLNPIMPILATSS 359 (406)
T ss_pred eEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc----ccccceecCcccceeeecc
Confidence 11234567788888887889999999988431233332211 3467888888744444444
No 271
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=91.45 E-value=12 Score=36.95 Aligned_cols=126 Identities=7% Similarity=0.082 Sum_probs=74.6
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
...++++.-..-+|+......|||++...|++ +. ++-.. ....+.+.+++ -+.|++|.... +.|
T Consensus 136 GRDm~y~~~scDly~~gsg~evYRlNLEqGrf----L~--P~~~~----~~~lN~v~in~-~hgLla~Gt~~-----g~V 199 (703)
T KOG2321|consen 136 GRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRF----LN--PFETD----SGELNVVSINE-EHGLLACGTED-----GVV 199 (703)
T ss_pred CccccccCCCccEEEeecCcceEEEEcccccc----cc--ccccc----cccceeeeecC-ccceEEecccC-----ceE
Confidence 34566655544444444567899999877774 11 12111 12446777876 55566653322 458
Q ss_pred EEEECCCCeEEEEeecC----C-Cc-cCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecC
Q 039428 131 AAYDLSTWKRLFLTQLS----G-KS-EEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRS 192 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~----~-~~-~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~ 192 (335)
-.||+.........+.. . ++ .....+..+.|+.+|--.-..+.+|.|+.+|...+...+..+
T Consensus 200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd 267 (703)
T KOG2321|consen 200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD 267 (703)
T ss_pred EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc
Confidence 88999876544222211 1 11 124557889999888555556788999999988665444433
No 272
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=91.42 E-value=9.3 Score=39.78 Aligned_cols=118 Identities=13% Similarity=0.106 Sum_probs=62.5
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccC---CCCCCceeEC-----------------CCCcEEEEe
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEE---KSTADDIAVD-----------------AEGNAYVTD 171 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~---~~~p~~~~vd-----------------~~G~lyV~d 171 (335)
++.||+++.+ +.|+.+|.++|+.++..+...+... .....+++.- .++++|+.
T Consensus 194 gg~lYv~t~~------~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~- 266 (764)
T TIGR03074 194 GDTLYLCTPH------NKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILP- 266 (764)
T ss_pred CCEEEEECCC------CeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEe-
Confidence 6899996432 3599999999998877665332110 0011222221 23477776
Q ss_pred CCCCeEEEEccC-CcEEEEecCC-c--ccc--ccccccccc-cCeEEEccCCeEEEEEC---------CCCEEEEEeCCC
Q 039428 172 VVSSKIWKVGVE-GQLLSIIRSP-L--FTA--KEWYKNVFG-LNGIVYHPDGFLIVIHM---------CSGNLFKIDIRK 235 (335)
Q Consensus 172 ~~~~~I~~~d~~-g~~~~~~~~~-~--~~~--~~~~~~~~~-p~Gia~~~dg~Lyvad~---------~~~~v~~~d~~~ 235 (335)
+..++++.+|.+ |+....++.. . +.. +........ ...-.+. ++.+|+... .++.|+.+|.++
T Consensus 267 T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~-~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 267 TSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVA-GTTVVIGGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred cCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEE-CCEEEEEecccccccccCCCcEEEEEECCC
Confidence 446788888876 5555433221 0 000 000000011 1112222 567777643 257888889888
Q ss_pred Cc
Q 039428 236 EE 237 (335)
Q Consensus 236 ~~ 237 (335)
++
T Consensus 346 Gk 347 (764)
T TIGR03074 346 GA 347 (764)
T ss_pred Cc
Confidence 74
No 273
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=91.32 E-value=5.1 Score=37.83 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=54.0
Q ss_pred EECCCCeEE-EEeecCCCccCCCCCCceeECCCCc--EEEEeC-CCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 133 YDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEGN--AYVTDV-VSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 133 ~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G~--lyV~d~-~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
.|+.||..+ ...+...... ..+.+.=++.+||+ +|.++. ....+|.+|.++...+.+-.. + ..+.-
T Consensus 15 ~D~~TG~~VtrLT~~~~~~h-~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg----~-----g~~~~ 84 (386)
T PF14583_consen 15 IDPDTGHRVTRLTPPDGHSH-RLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDG----P-----GDNTF 84 (386)
T ss_dssp E-TTT--EEEE-S-TTS-EE----TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---S----S------B-TT
T ss_pred eCCCCCceEEEecCCCCccc-ceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccC----C-----CCCcc
Confidence 477777544 2222211111 35666677788885 555664 356899999998776644221 0 12233
Q ss_pred eEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 209 GIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 209 Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
|..++++. .+|+.. .+.+|+++|+++.+ ...++..+.+ +..-.....++++..++.
T Consensus 85 g~~~s~~~~~~~Yv~-~~~~l~~vdL~T~e-~~~vy~~p~~--~~g~gt~v~n~d~t~~~g 141 (386)
T PF14583_consen 85 GGFLSPDDRALYYVK-NGRSLRRVDLDTLE-ERVVYEVPDD--WKGYGTWVANSDCTKLVG 141 (386)
T ss_dssp T-EE-TTSSEEEEEE-TTTEEEEEETTT---EEEEEE--TT--EEEEEEEEE-TTSSEEEE
T ss_pred ceEEecCCCeEEEEE-CCCeEEEEECCcCc-EEEEEECCcc--cccccceeeCCCccEEEE
Confidence 67788877 765433 45789999999974 4344444331 111112223566665544
No 274
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.11 E-value=15 Score=35.21 Aligned_cols=196 Identities=8% Similarity=-0.083 Sum_probs=92.1
Q ss_pred ceeeeEEc-CCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcC--C--CCcceEEEeCCCCeEEEEEecCCC
Q 039428 50 LCETAKWD-DVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV--G--NATMGIAVDRPRNRLLVAFTDVLG 124 (335)
Q Consensus 50 ~pegia~d-~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~--~--~~p~Gi~~d~~~g~l~v~~~D~~~ 124 (335)
.--+|++. .+.+.-++....+.|.+-++. |+. .+. . ..+... . ...++|.+. +++.|++ .+.
T Consensus 89 ~L~~V~F~~~d~~~GwAVG~~G~IL~T~DG-G~t----W~~--~-~~~~~~~~~~~~~l~~v~f~--~~~g~~v-G~~-- 155 (398)
T PLN00033 89 VLLDIAFVPDDPTHGFLLGTRQTLLETKDG-GKT----WVP--R-SIPSAEDEDFNYRFNSISFK--GKEGWII-GKP-- 155 (398)
T ss_pred ceEEEEeccCCCCEEEEEcCCCEEEEEcCC-CCC----ceE--C-ccCcccccccccceeeeEEE--CCEEEEE-cCc--
Confidence 45788883 233344444457788888643 441 111 1 111110 0 124788886 4678885 322
Q ss_pred CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCc----cccc--
Q 039428 125 NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPL----FTAK-- 198 (335)
Q Consensus 125 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~----~~~~-- 198 (335)
..|+ ...+.|+.......... . ...+..+....++..|+.. ..+.|++-+-.|+.-+....+. +...
T Consensus 156 ---G~il-~T~DgG~tW~~~~~~~~-~-p~~~~~i~~~~~~~~~ivg-~~G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~ 228 (398)
T PLN00033 156 ---AILL-HTSDGGETWERIPLSPK-L-PGEPVLIKATGPKSAEMVT-DEGAIYVTSNAGRNWKAAVEETVSATLNRTVS 228 (398)
T ss_pred ---eEEE-EEcCCCCCceECccccC-C-CCCceEEEEECCCceEEEe-ccceEEEECCCCCCceEccccccccccccccc
Confidence 2233 33455543322222110 0 1123445554455566654 5567777765554322110000 0000
Q ss_pred -c---ccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 199 -E---WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 199 -~---~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
+ ..+-...-.++...+||.+++... .+.+++-+-.+.. ..+.+..+.. ....++++.++|.+|++..
T Consensus 229 s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~-~G~~~~s~d~G~~-~W~~~~~~~~---~~l~~v~~~~dg~l~l~g~ 299 (398)
T PLN00033 229 SGISGASYYTGTFSTVNRSPDGDYVAVSS-RGNFYLTWEPGQP-YWQPHNRASA---RRIQNMGWRADGGLWLLTR 299 (398)
T ss_pred ccccccceeccceeeEEEcCCCCEEEEEC-CccEEEecCCCCc-ceEEecCCCc---cceeeeeEcCCCCEEEEeC
Confidence 0 000001134566677875554443 3357766555541 2344444321 2356888889999999865
No 275
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=91.11 E-value=1 Score=39.39 Aligned_cols=149 Identities=14% Similarity=0.075 Sum_probs=69.8
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECC-C-CeEEEEeecCCCccC-CCCCCceeECCCCcEEEEeCCCCeEEEE
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLS-T-WKRLFLTQLSGKSEE-KSTADDIAVDAEGNAYVTDVVSSKIWKV 180 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~-~-~~~~~~~~~~~~~~~-~~~p~~~~vd~~G~lyV~d~~~~~I~~~ 180 (335)
.-|+..| +++||+...| .+++..+. . +.... ..-...+.+ -+....|.+|+.|-||..+. .+.++|.
T Consensus 37 ~~i~~~P-~g~lY~I~~~-------~lY~~~~~~~~~~~~~-~~~~~Ig~g~W~~F~~i~~d~~G~LYaV~~-~G~lyR~ 106 (229)
T PF14517_consen 37 RDIAAGP-NGRLYAIRND-------GLYRGSPSSSGGNTWD-SGSKQIGDGGWNSFKFIFFDPTGVLYAVTP-DGKLYRH 106 (229)
T ss_dssp SEEEE-T-TS-EEEEETT-------EEEEES---STT--HH-HH-EEEE-S-GGG-SEEEE-TTS-EEEEET-T-EEEEE
T ss_pred ceEEEcC-CceEEEEECC-------ceEEecCCccCccccc-ccCcccccCcccceeEEEecCCccEEEecc-ccceeec
Confidence 4577787 8999997543 37777322 1 11110 000000111 44566899999999998755 6788988
Q ss_pred ccCCcEEEEecCCccc-ccccc--ccccccCeEEEccCCeEEEEECCCCEEEEE-eCCCCc----eeEEEEeccCCcCCC
Q 039428 181 GVEGQLLSIIRSPLFT-AKEWY--KNVFGLNGIVYHPDGFLIVIHMCSGNLFKI-DIRKEE----EEVKLIELRGGSSLS 252 (335)
Q Consensus 181 d~~g~~~~~~~~~~~~-~~~~~--~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~-d~~~~~----~~~~~~~~~g~~~~~ 252 (335)
.+-.....- +.. ..... ..-...+-|-++++|.||.-+. ++++++. ++.+.. .....+...+ ..
T Consensus 107 ~~~~~~~~~----W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~~-dg~~~~~~~p~~~~~~W~~~s~~v~~~g---w~ 178 (229)
T PF14517_consen 107 PRPTNGSDN----WIGGSGKKIGGTGWNDFDAVFAGPNGVLYAITP-DGRLYRRYRPDGGSDRWLSGSGLVGGGG---WD 178 (229)
T ss_dssp S---STT------HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEET-TE-EEEE---SSTT--HHHH-EEEESSS---GG
T ss_pred cCCCccCcc----hhhccceecccCCCccceEEEeCCCccEEEEcC-CCceEEeCCCCCCCCccccccceeccCC---cc
Confidence 764211110 100 00000 0112267788899999998884 4578877 444431 1122332222 23
Q ss_pred CCCeEEEcCCCcEEEEec
Q 039428 253 LGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 253 ~pdGia~d~~g~l~va~~ 270 (335)
.+.-|...++|+||....
T Consensus 179 ~~~~i~~~~~g~L~~V~~ 196 (229)
T PF14517_consen 179 SFHFIFFSPDGNLWAVKS 196 (229)
T ss_dssp GEEEEEE-TTS-EEEE-E
T ss_pred cceEEeeCCCCcEEEEec
Confidence 466788889999998843
No 276
>PRK13616 lipoprotein LpqB; Provisional
Probab=91.03 E-value=19 Score=36.39 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=40.1
Q ss_pred ccCeEEEccCC-eEEEEECCCCEEEE---EeCCCCceeEEE---EeccCCcCCCC-CCeEEEcCCCcEEEEecCC-CeEE
Q 039428 206 GLNGIVYHPDG-FLIVIHMCSGNLFK---IDIRKEEEEVKL---IELRGGSSLSL-GDGLALLSPTKLVVAGNPY-PSAR 276 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~~~v~~---~d~~~~~~~~~~---~~~~g~~~~~~-pdGia~d~~g~l~va~~~~-~~~~ 276 (335)
.+..+.++||| ++.+.- .++|+. +...++ ..+. ..+.. . +.. +..+++-.++.|+|...+. ..++
T Consensus 449 ~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G--~~~l~~~~~l~~-~-l~~~~~~l~W~~~~~L~V~~~~~~~~v~ 522 (591)
T PRK13616 449 PISELQLSRDGVRAAMII--GGKVYLAVVEQTEDG--QYALTNPREVGP-G-LGDTAVSLDWRTGDSLVVGRSDPEHPVW 522 (591)
T ss_pred CcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCC--ceeecccEEeec-c-cCCccccceEecCCEEEEEecCCCCceE
Confidence 48899999999 665544 367877 554444 3222 11111 1 222 4678888889888874322 2355
Q ss_pred EEEc
Q 039428 277 LVES 280 (335)
Q Consensus 277 v~~~ 280 (335)
.+..
T Consensus 523 ~v~v 526 (591)
T PRK13616 523 YVNL 526 (591)
T ss_pred EEec
Confidence 4544
No 277
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.03 E-value=24 Score=37.58 Aligned_cols=199 Identities=15% Similarity=0.142 Sum_probs=112.2
Q ss_pred CEEEEEecCCeEEEEECCCCC-CCcceeeeeEEeecCCc-CCCCcceEEEe--CCCCeEEEEEecCCCCccceEEEEECC
Q 039428 61 RRFLVSFLDGGVGQVLVPDEY-SPGTVLEEVKLVKEDDV-VGNATMGIAVD--RPRNRLLVAFTDVLGNKYSALAAYDLS 136 (335)
Q Consensus 61 ~~~~~~~~~~~I~~~d~~~g~-~~~~v~~~~~~~~~~~~-~~~~p~Gi~~d--~~~g~l~v~~~D~~~~~~~~v~~~d~~ 136 (335)
.++.+...+|.|..|++-... .+.+++.. |....++ .+..-.|+.+| -..|.|+++ +|. ..|.+||.+
T Consensus 1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTa--w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t-Gd~-----r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTA--WSSLSDQLPGARGTGLVVDWQQQSGHLLVT-GDV-----RSIRIWDAH 1195 (1387)
T ss_pred hheeeeccCceEEEecccccccCCceeEEe--eccccccCccCCCCCeeeehhhhCCeEEec-CCe-----eEEEEEecc
Confidence 455555667888888632111 11122221 2111111 11234566666 235788885 444 368899988
Q ss_pred CCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccCCcE----EEEecCCccccccccccccccCeEE
Q 039428 137 TWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEGQL----LSIIRSPLFTAKEWYKNVFGLNGIV 211 (335)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g~~----~~~~~~~~~~~~~~~~~~~~p~Gia 211 (335)
..++...++... ...+..+..|-. |++.++....|+|..+|..-.. +...+ .+... ....++.
T Consensus 1196 ~E~~~~diP~~s----~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R--~h~~~------~~Iv~~s 1263 (1387)
T KOG1517|consen 1196 KEQVVADIPYGS----STLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR--EHNDV------EPIVHLS 1263 (1387)
T ss_pred cceeEeecccCC----CccceeecccccCCceEEEeecCCceEEeecccCCccccceeec--ccCCc------ccceeEE
Confidence 766664444421 345566666653 7999999999999999865221 11111 11111 1267888
Q ss_pred EccCCe-EEEEECCCCEEEEEeCCCC-ceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 212 YHPDGF-LIVIHMCSGNLFKIDIRKE-EEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 212 ~~~dg~-Lyvad~~~~~v~~~d~~~~-~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
+-+.|. =.|+-+.+|.|..+|+... +.....+...-+. -..-..|.+..+-.++.+++. ..+.|+...
T Consensus 1264 lq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y-Gs~lTal~VH~hapiiAsGs~-q~ikIy~~~ 1333 (1387)
T KOG1517|consen 1264 LQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY-GSALTALTVHEHAPIIASGSA-QLIKIYSLS 1333 (1387)
T ss_pred eecCCCcceeeeccCCeEEEEecccCcccccceeeecccc-CccceeeeeccCCCeeeecCc-ceEEEEecC
Confidence 888773 3778889999999999984 1111111111100 001456788877788877664 567776654
No 278
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=91.00 E-value=11 Score=33.58 Aligned_cols=149 Identities=20% Similarity=0.192 Sum_probs=84.6
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCcc--------CCCCCCceeECCCCc--EEEEeCC
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSE--------EKSTADDIAVDAEGN--AYVTDVV 173 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--------~~~~p~~~~vd~~G~--lyV~d~~ 173 (335)
.|-.+- +|.||--...+ ..|.+||+.++.+.....++..+. ....--|+++|..|- ||.+...
T Consensus 72 tG~vVY--ngslYY~~~~s-----~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~ 144 (250)
T PF02191_consen 72 TGHVVY--NGSLYYNKYNS-----RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN 144 (250)
T ss_pred CCeEEE--CCcEEEEecCC-----ceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC
Confidence 466665 57777732212 469999999987764444533221 012224789998883 4444444
Q ss_pred CC--eEEEEccCC-cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCC---CEE-EEEeCCCCceeEEEEecc
Q 039428 174 SS--KIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCS---GNL-FKIDIRKEEEEVKLIELR 246 (335)
Q Consensus 174 ~~--~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~---~~v-~~~d~~~~~~~~~~~~~~ 246 (335)
.+ .|-++|++. ...+.+... +.. .--|=||---|.||+.++.+ .+| +.||+..++.....+...
T Consensus 145 ~g~ivvskld~~tL~v~~tw~T~-~~k--------~~~~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i~f~ 215 (250)
T PF02191_consen 145 NGNIVVSKLDPETLSVEQTWNTS-YPK--------RSAGNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSIPFP 215 (250)
T ss_pred CCcEEEEeeCcccCceEEEEEec-cCc--------hhhcceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceeeeec
Confidence 44 455788764 333334322 211 12233666679999998875 444 888998763221223322
Q ss_pred CCcCCCCCCeEEEcCCC-cEEEEec
Q 039428 247 GGSSLSLGDGLALLSPT-KLVVAGN 270 (335)
Q Consensus 247 g~~~~~~pdGia~d~~g-~l~va~~ 270 (335)
. ......-+..+|.. .||+=++
T Consensus 216 ~--~~~~~~~l~YNP~dk~LY~wd~ 238 (250)
T PF02191_consen 216 N--PYGNISMLSYNPRDKKLYAWDN 238 (250)
T ss_pred c--ccCceEeeeECCCCCeEEEEEC
Confidence 1 13345667777764 6887777
No 279
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=90.93 E-value=19 Score=36.25 Aligned_cols=186 Identities=15% Similarity=0.038 Sum_probs=108.3
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
..-.++....++. ++.+.++.++.+|. . ++. .. . .++.. .....++.-+ .+ .|++.+ .++
T Consensus 102 snVC~ls~~~~~~-~iSgSWD~TakvW~-~-~~l----~~---~--l~gH~-asVWAv~~l~-e~-~~vTgs---aDK-- 161 (745)
T KOG0301|consen 102 SNVCSLSIGEDGT-LISGSWDSTAKVWR-I-GEL----VY---S--LQGHT-ASVWAVASLP-EN-TYVTGS---ADK-- 161 (745)
T ss_pred cceeeeecCCcCc-eEecccccceEEec-c-hhh----hc---c--cCCcc-hheeeeeecC-CC-cEEecc---Ccc--
Confidence 3456777777766 45558888877774 2 331 11 1 11111 1345666555 34 666421 222
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEE-ecCCcccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSI-IRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~p 207 (335)
.|..|.- ++.... +.+. .....++++-+++ -|++-+..|.|..++.+|+.+.. .+.. ...
T Consensus 162 tIklWk~--~~~l~t--f~gH---tD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ght-----------n~v 222 (745)
T KOG0301|consen 162 TIKLWKG--GTLLKT--FSGH---TDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHT-----------NFV 222 (745)
T ss_pred eeeeccC--Cchhhh--hccc---hhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccc-----------eEE
Confidence 3666653 333311 2111 3456678887775 35566788899999998876542 2221 224
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
..|....++.++|+-..++++...+.+ . ..+.+.+++. .-+.+.+-.+|.++|++.. +.++|+...
T Consensus 223 Ysis~~~~~~~Ivs~gEDrtlriW~~~-e--~~q~I~lPtt----siWsa~~L~NgDIvvg~SD-G~VrVfT~~ 288 (745)
T KOG0301|consen 223 YSISMALSDGLIVSTGEDRTLRIWKKD-E--CVQVITLPTT----SIWSAKVLLNGDIVVGGSD-GRVRVFTVD 288 (745)
T ss_pred EEEEecCCCCeEEEecCCceEEEeecC-c--eEEEEecCcc----ceEEEEEeeCCCEEEeccC-ceEEEEEec
Confidence 456655566788887777765544433 3 7788887662 2567777788999999662 667776654
No 280
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=90.92 E-value=13 Score=35.61 Aligned_cols=155 Identities=15% Similarity=0.042 Sum_probs=84.5
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-.+|.....++..-+...+.++..|..++.. +++-.+. +..+..+++-. +.++.. .+|. +.|
T Consensus 289 v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---------qlifrg~--~~sidcv~~In-~~Hfvs-GSdn-----G~I 350 (479)
T KOG0299|consen 289 VLGIDALSRERCVTVGGRDRTVRLWKIPEES---------QLIFRGG--EGSIDCVAFIN-DEHFVS-GSDN-----GSI 350 (479)
T ss_pred eeeechhcccceEEeccccceeEEEeccccc---------eeeeeCC--CCCeeeEEEec-ccceee-ccCC-----ceE
Confidence 4556555556665555455555444433222 1221121 13566777763 444443 2332 458
Q ss_pred EEEECCCCeEEEEeecCCCcc----CC---CCCCceeECCCCcEEEEeCCCCeEEE--EccCCcEEEEecCCcccccccc
Q 039428 131 AAYDLSTWKRLFLTQLSGKSE----EK---STADDIAVDAEGNAYVTDVVSSKIWK--VGVEGQLLSIIRSPLFTAKEWY 201 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~----~~---~~p~~~~vd~~G~lyV~d~~~~~I~~--~d~~g~~~~~~~~~~~~~~~~~ 201 (335)
..|+....+.++.......-. +. ..-+.+++-+.-+++.+.+.+|.|.. +..+-+....+.+-.
T Consensus 351 aLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls------- 423 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS------- 423 (479)
T ss_pred EEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-------
Confidence 899988887776554321111 11 24567888887788888887775554 443323333222111
Q ss_pred ccccccCeEEEccCC-eEEEEECCCCEEEEE
Q 039428 202 KNVFGLNGIVYHPDG-FLIVIHMCSGNLFKI 231 (335)
Q Consensus 202 ~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~ 231 (335)
-....|+|+|+++| +++++-..-+++-|.
T Consensus 424 -~~GfVNsl~f~~sgk~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 424 -LVGFVNSLAFSNSGKRIVAGIGKEHRLGRW 453 (479)
T ss_pred -cccEEEEEEEccCCCEEEEeccccccccee
Confidence 11248999999999 587775554444333
No 281
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=90.85 E-value=13 Score=34.04 Aligned_cols=176 Identities=11% Similarity=0.138 Sum_probs=99.7
Q ss_pred CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC-eEEEEeecCC
Q 039428 70 GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW-KRLFLTQLSG 148 (335)
Q Consensus 70 ~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~-~~~~~~~~~~ 148 (335)
+.|..||+. .+. . +.+..+ . ....++.++ +++|.|+.. +.|++|..... +.....+.
T Consensus 75 NkviIWDD~-k~~--~-i~el~f---~----~~I~~V~l~--r~riVvvl~-------~~I~VytF~~n~k~l~~~et-- 132 (346)
T KOG2111|consen 75 NKVIIWDDL-KER--C-IIELSF---N----SEIKAVKLR--RDRIVVVLE-------NKIYVYTFPDNPKLLHVIET-- 132 (346)
T ss_pred ceEEEEecc-cCc--E-EEEEEe---c----cceeeEEEc--CCeEEEEec-------CeEEEEEcCCChhheeeeec--
Confidence 689999853 332 1 222111 1 134688886 578887654 45888876533 23322222
Q ss_pred CccCCCCCCceeE-CCC-CcEEEEe--CCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECC
Q 039428 149 KSEEKSTADDIAV-DAE-GNAYVTD--VVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC 224 (335)
Q Consensus 149 ~~~~~~~p~~~~v-d~~-G~lyV~d--~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~ 224 (335)
...|+|+.. ++. ..-+++- ...|.|...|....... .+.+- .........++++.+|.+..+.+.
T Consensus 133 ----~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~---~p~~I----~AH~s~Iacv~Ln~~Gt~vATaSt 201 (346)
T KOG2111|consen 133 ----RSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN---APSII----NAHDSDIACVALNLQGTLVATAST 201 (346)
T ss_pred ----ccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC---CceEE----EcccCceeEEEEcCCccEEEEecc
Confidence 356777664 332 3444432 34688888886532220 00000 011223678899999999999999
Q ss_pred CCEEEEE-eCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 225 SGNLFKI-DIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 225 ~~~v~~~-d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.|.+.|| |...+. .++.+.. | ..-+.-.-|++.++..+..+....+.+-++...
T Consensus 202 kGTLIRIFdt~~g~-~l~E~RR-G-~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 202 KGTLIRIFDTEDGT-LLQELRR-G-VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLR 256 (346)
T ss_pred CcEEEEEEEcCCCc-Eeeeeec-C-CchheEEEEEeCCCccEEEEEcCCCeEEEEEee
Confidence 9987765 665553 5555543 3 112456789999987655554434566665543
No 282
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=90.61 E-value=8.2 Score=35.53 Aligned_cols=149 Identities=17% Similarity=0.178 Sum_probs=89.1
Q ss_pred CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeC--CCCeEEEEEecCCCCccceEEEEECCCC
Q 039428 61 RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDR--PRNRLLVAFTDVLGNKYSALAAYDLSTW 138 (335)
Q Consensus 61 ~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~--~~g~l~v~~~D~~~~~~~~v~~~d~~~~ 138 (335)
+++.++..++.|..+|..++++ +++ + +.+. ...+|++|-. .-..++.+..| +.|..||.++.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~----l~~--f-k~~~---~~~N~vrf~~~ds~h~v~s~ssD------G~Vr~wD~Rs~ 104 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQL----LEE--F-KGPP---ATTNGVRFISCDSPHGVISCSSD------GTVRLWDIRSQ 104 (376)
T ss_pred eeEEEEecCCeEEEEeccchhh----hhe--e-cCCC---CcccceEEecCCCCCeeEEeccC------CeEEEEEeecc
Confidence 5677778899999999765552 442 2 2221 1346888753 23567776555 35999999876
Q ss_pred eEEEEeecCCCccCCCCCCceeECC--CCcEEEEeCC----CCeEEEEccCCcEEEEecCCccccccccccccccCeEEE
Q 039428 139 KRLFLTQLSGKSEEKSTADDIAVDA--EGNAYVTDVV----SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVY 212 (335)
Q Consensus 139 ~~~~~~~~~~~~~~~~~p~~~~vd~--~G~lyV~d~~----~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~ 212 (335)
.......... . ..--.+.+|. ++++..+.+. ...|+-+|....... ++ .++.. ..--..-+.|
T Consensus 105 ~e~a~~~~~~--~--~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-l~-~~~eS-----H~DDVT~lrF 173 (376)
T KOG1188|consen 105 AESARISWTQ--Q--SGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-LR-QLNES-----HNDDVTQLRF 173 (376)
T ss_pred hhhhheeccC--C--CCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch-hh-hhhhh-----ccCcceeEEe
Confidence 5443333321 1 1112355555 5778887653 346666765432210 10 01110 0112677899
Q ss_pred ccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 213 HPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 213 ~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
.|.. +|.++-+..|-|-.||++..
T Consensus 174 HP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 174 HPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred cCCCCCeEEeecccceEEeeecCCC
Confidence 9977 99999999999999999875
No 283
>PLN02153 epithiospecifier protein
Probab=90.60 E-value=14 Score=34.22 Aligned_cols=197 Identities=14% Similarity=0.140 Sum_probs=92.8
Q ss_pred ceEEEeCCCCeEEEEEecCCCC--ccceEEEEECCCCeEEEEeecCCCccCCCCCCcee-ECCCCcEEEEeCC-----CC
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGN--KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIA-VDAEGNAYVTDVV-----SS 175 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~--~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~-vd~~G~lyV~d~~-----~~ 175 (335)
+++++. ++.|||........ ..+.+++||+.+.+-......... . .....+.+ +.-++.+|+-... ..
T Consensus 26 h~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-p-~~~~~~~~~~~~~~~iyv~GG~~~~~~~~ 101 (341)
T PLN02153 26 HGIAVV--GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDV-P-RISCLGVRMVAVGTKLYIFGGRDEKREFS 101 (341)
T ss_pred ceEEEE--CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCC-C-CCccCceEEEEECCEEEEECCCCCCCccC
Confidence 455555 57899963221111 114699999988754322111100 0 11111222 2224679987432 24
Q ss_pred eEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCC-----------CEEEEEeCCCCceeEEEEe
Q 039428 176 KIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCS-----------GNLFKIDIRKEEEEVKLIE 244 (335)
Q Consensus 176 ~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~-----------~~v~~~d~~~~~~~~~~~~ 244 (335)
.++++|+....-..+.. .... ..+....-...++. ++.|||.-..+ +.|+++|+... ....+.
T Consensus 102 ~v~~yd~~t~~W~~~~~--~~~~-~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~--~W~~l~ 175 (341)
T PLN02153 102 DFYSYDTVKNEWTFLTK--LDEE-GGPEARTFHSMASD-ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADG--KWVQLP 175 (341)
T ss_pred cEEEEECCCCEEEEecc--CCCC-CCCCCceeeEEEEE-CCEEEEECCccCCCccCCCcccceEEEEECCCC--eEeeCC
Confidence 78899987543322211 1000 00111122344443 67888763321 35888998876 444443
Q ss_pred ccCCc-CCCCCCeEEEcCCCcEEEEecC-------------CCeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEEeCC
Q 039428 245 LRGGS-SLSLGDGLALLSPTKLVVAGNP-------------YPSARLVESSDG-WETASVVAKFNGPTHRVATAATVKDG 309 (335)
Q Consensus 245 ~~g~~-~~~~pdGia~d~~g~l~va~~~-------------~~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~~g 309 (335)
..+.. ....-.++++ -++++||.... .+.+.+++.... |...+..+.. |..+.-.++++-++
T Consensus 176 ~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~--P~~r~~~~~~~~~~ 252 (341)
T PLN02153 176 DPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAK--PSARSVFAHAVVGK 252 (341)
T ss_pred CCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCC--CCCcceeeeEEECC
Confidence 22100 0001123444 35788886321 245666765544 7654332222 32222234444578
Q ss_pred eEEE
Q 039428 310 RVYL 313 (335)
Q Consensus 310 ~lyV 313 (335)
+|||
T Consensus 253 ~iyv 256 (341)
T PLN02153 253 YIII 256 (341)
T ss_pred EEEE
Confidence 8998
No 284
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=90.56 E-value=1.3 Score=43.44 Aligned_cols=149 Identities=12% Similarity=0.157 Sum_probs=86.4
Q ss_pred eeeeEEcCCCCEEEEEecC---CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 51 CETAKWDDVGRRFLVSFLD---GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~---~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
-..+.|+.+|..+.+.+.+ .+|+..+.. ++. .+.++- ..++.+..+.|+|..-.++|++.
T Consensus 524 i~~vtWHrkGDYlatV~~~~~~~~VliHQLS-K~~-----sQ~PF~----kskG~vq~v~FHPs~p~lfVaTq------- 586 (733)
T KOG0650|consen 524 IRQVTWHRKGDYLATVMPDSGNKSVLIHQLS-KRK-----SQSPFR----KSKGLVQRVKFHPSKPYLFVATQ------- 586 (733)
T ss_pred cceeeeecCCceEEEeccCCCcceEEEEecc-ccc-----ccCchh----hcCCceeEEEecCCCceEEEEec-------
Confidence 3678999999866665432 455555432 221 100121 12246789999998889999754
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCc--EEEEecCCcccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQ--LLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~--~~~~~~~~~~~~~~~~~~~~ 205 (335)
..|..||+...+++.. +. .+......+++++.|.=.|..+...++..+|.+-. ..+.+. +.. .
T Consensus 587 ~~vRiYdL~kqelvKk--L~---tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr---~H~-------~ 651 (733)
T KOG0650|consen 587 RSVRIYDLSKQELVKK--LL---TGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLR---LHE-------K 651 (733)
T ss_pred cceEEEehhHHHHHHH--Hh---cCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhh---hhh-------h
Confidence 3499999876544311 10 11345567999999853444577788999998732 221111 111 1
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEE
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKI 231 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~ 231 (335)
....+++.+.=-|+.+-+..+.+++|
T Consensus 652 avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 652 AVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred hhhhhhhccccceeeeecCCCcEEEE
Confidence 24456666555666666666665555
No 285
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=90.51 E-value=12 Score=35.31 Aligned_cols=125 Identities=10% Similarity=0.173 Sum_probs=80.4
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEE-ecCCcccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSI-IRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~-~~~~~~~~~~~~~~~~~p 207 (335)
.|.-||..+......+++ .+....+....+|+=..+.+..+.+-.+|..+..++. +....|. ....-
T Consensus 323 kvRfwD~Rs~~~~~sv~~------gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k------~asDw 390 (459)
T KOG0288|consen 323 KVRFWDIRSADKTRSVPL------GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFK------CASDW 390 (459)
T ss_pred ceEEEeccCCceeeEeec------CcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccc------ccccc
Confidence 477788766655544443 2355667788888755555778889999988776553 2111121 11236
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
+-++|+|++.+..+-+.+++|+..+..+++ ....+..++.. +...-+++++.|.-.++
T Consensus 391 trvvfSpd~~YvaAGS~dgsv~iW~v~tgK-lE~~l~~s~s~--~aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGSVYIWSVFTGK-LEKVLSLSTSN--AAITSLSWNPSGSGLLS 448 (459)
T ss_pred ceeEECCCCceeeeccCCCcEEEEEccCce-EEEEeccCCCC--cceEEEEEcCCCchhhc
Confidence 788999999888888889999999999984 33334433311 23456777777753333
No 286
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=90.39 E-value=3 Score=38.49 Aligned_cols=180 Identities=14% Similarity=0.147 Sum_probs=101.9
Q ss_pred CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC
Q 039428 59 VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW 138 (335)
Q Consensus 59 ~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~ 138 (335)
+.++++.+..+.+|.+||..+++. +. .++-.- ....++.++ +|.+.-++.| ..+.+||+.+-
T Consensus 246 d~rviisGSSDsTvrvWDv~tge~----l~--tlihHc----eaVLhlrf~--ng~mvtcSkD------rsiaVWdm~sp 307 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTGEP----LN--TLIHHC----EAVLHLRFS--NGYMVTCSKD------RSIAVWDMASP 307 (499)
T ss_pred cceEEEecCCCceEEEEeccCCch----hh--HHhhhc----ceeEEEEEe--CCEEEEecCC------ceeEEEeccCc
Confidence 334444447788999999766652 22 122111 245788886 5665554433 24777887643
Q ss_pred eEE-EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccCeEEEcc-C
Q 039428 139 KRL-FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHP-D 215 (335)
Q Consensus 139 ~~~-~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~-d 215 (335)
.-+ ...-+. +. ....|-+.+|.+ +.|+-+...+|.+++... ++++.+ . ..-.|||--. .
T Consensus 308 s~it~rrVLv--GH-rAaVNvVdfd~k--yIVsASgDRTikvW~~st~efvRtl-----~--------gHkRGIAClQYr 369 (499)
T KOG0281|consen 308 TDITLRRVLV--GH-RAAVNVVDFDDK--YIVSASGDRTIKVWSTSTCEFVRTL-----N--------GHKRGIACLQYR 369 (499)
T ss_pred hHHHHHHHHh--hh-hhheeeeccccc--eEEEecCCceEEEEeccceeeehhh-----h--------cccccceehhcc
Confidence 211 000010 11 234455656544 777778888888888763 444422 1 1256888776 5
Q ss_pred CeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 216 GFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 216 g~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
|++.|+.+..+.|..+|+..++ -++.+. | . -....-+.+|. .=.|++...+.++|.+..
T Consensus 370 ~rlvVSGSSDntIRlwdi~~G~-cLRvLe--G-H-EeLvRciRFd~--krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 370 DRLVVSGSSDNTIRLWDIECGA-CLRVLE--G-H-EELVRCIRFDN--KRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred CeEEEecCCCceEEEEeccccH-HHHHHh--c-h-HHhhhheeecC--ceeeeccccceEEEEecc
Confidence 6999999999999999998873 333332 2 1 01234566653 334554444666666654
No 287
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=90.35 E-value=14 Score=33.61 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=87.4
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-..+.+++..+.+.++.|++++..+|.+... +. ..+. .+ ......++.+ ...+|+...| +.
T Consensus 15 ~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~-----l~-~~~~--~~---~plL~c~F~d-~~~~~~G~~d------g~ 76 (323)
T KOG1036|consen 15 GISSVKFSPSSSDLLVSSWDGSLRLYDVPANS-----LK-LKFK--HG---APLLDCAFAD-ESTIVTGGLD------GQ 76 (323)
T ss_pred ceeeEEEcCcCCcEEEEeccCcEEEEeccchh-----hh-hhee--cC---CceeeeeccC-CceEEEeccC------ce
Confidence 45678899998888899899998888753222 11 0111 11 1234566653 6778884433 46
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
|.++|+.++.......- ......|...+.-+..|+.+-..+|-.+|+..+... ..+..+ ....
T Consensus 77 vr~~Dln~~~~~~igth------~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~----~~~d~~------kkVy- 139 (323)
T KOG1036|consen 77 VRRYDLNTGNEDQIGTH------DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVV----GTFDQG------KKVY- 139 (323)
T ss_pred EEEEEecCCcceeeccC------CCceEEEEeeccCCeEEEcccCccEEEEeccccccc----cccccC------ceEE-
Confidence 99999998765422111 112223444454457777777889999998864322 112211 1122
Q ss_pred EEEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 210 IVYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 210 ia~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
+.+-.| .|.| -+.+.+|..+|+..-
T Consensus 140 -~~~v~g~~LvV-g~~~r~v~iyDLRn~ 165 (323)
T KOG1036|consen 140 -CMDVSGNRLVV-GTSDRKVLIYDLRNL 165 (323)
T ss_pred -EEeccCCEEEE-eecCceEEEEEcccc
Confidence 333344 5555 346777888888764
No 288
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=90.34 E-value=1.7 Score=40.66 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=73.4
Q ss_pred eEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC--------CcEEEEecCCccccccccccccccCeE
Q 039428 139 KRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE--------GQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 139 ~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~--------g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
.+.+...+... ....|.+.++++|++..+....+.|..+-.. + ........|....-......-+.-+
T Consensus 54 ~V~y~s~Ls~H---~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~-e~~~~ke~w~v~k~lr~h~~diydL 129 (434)
T KOG1009|consen 54 KVEYLSSLSRH---TRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADT-EADLNKEKWVVKKVLRGHRDDIYDL 129 (434)
T ss_pred eEEEeecccCC---cceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccc-hhhhCccceEEEEEecccccchhhh
Confidence 34444455322 3567889999999999887777777665443 2 0000000011000001112237789
Q ss_pred EEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 211 VYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 211 a~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
++++|++..++.+..+.++.+|...+ .+..+ .+++ -.++.|++.|+-+..+.+
T Consensus 130 ~Ws~d~~~l~s~s~dns~~l~Dv~~G--~l~~~--~~dh-~~yvqgvawDpl~qyv~s 182 (434)
T KOG1009|consen 130 AWSPDSNFLVSGSVDNSVRLWDVHAG--QLLAI--LDDH-EHYVQGVAWDPLNQYVAS 182 (434)
T ss_pred hccCCCceeeeeeccceEEEEEeccc--eeEee--cccc-ccccceeecchhhhhhhh
Confidence 99999988888889999999999987 33222 2223 367999999998665444
No 289
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=90.03 E-value=10 Score=39.44 Aligned_cols=159 Identities=21% Similarity=0.162 Sum_probs=87.8
Q ss_pred CCcceeeeEEcCCC-CEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeC-----CCCeEEEEE
Q 039428 47 PSFLCETAKWDDVG-RRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDR-----PRNRLLVAF 119 (335)
Q Consensus 47 ~~~~pegia~d~~g-~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~-----~~g~l~v~~ 119 (335)
..+.|..+..+.+. ++++.+ ...+.||++|...|+ |+++ |-..... ....++-+. .....|++.
T Consensus 479 ~~~~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GK----VV~e--W~~~~~~---~v~~~~p~~K~aqlt~e~tflGl 549 (794)
T PF08553_consen 479 KNFTPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGK----VVEE--WKVHDDI---PVVDIAPDSKFAQLTNEQTFLGL 549 (794)
T ss_pred cccCcchhhhhccccceEeecCCCCCceEEEecCCCc----EEEE--eecCCCc---ceeEecccccccccCCCceEEEE
Confidence 34467666665554 455555 556899999987676 5664 5321111 111222110 023445543
Q ss_pred ecCCCCccceEEEEECCCC--eEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccc
Q 039428 120 TDVLGNKYSALAAYDLSTW--KRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTA 197 (335)
Q Consensus 120 ~D~~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~ 197 (335)
.+ +.|+++|++-. +++. .....-.. .+....++.+.+|.+-|+ +..|.|..+|.-|+..+.+- +.+.
T Consensus 550 s~------n~lfriDpR~~~~k~v~-~~~k~Y~~-~~~Fs~~aTt~~G~iavg-s~~G~IRLyd~~g~~AKT~l-p~lG- 618 (794)
T PF08553_consen 550 SD------NSLFRIDPRLSGNKLVD-SQSKQYSS-KNNFSCFATTEDGYIAVG-SNKGDIRLYDRLGKRAKTAL-PGLG- 618 (794)
T ss_pred CC------CceEEeccCCCCCceee-cccccccc-CCCceEEEecCCceEEEE-eCCCcEEeecccchhhhhcC-CCCC-
Confidence 32 46999999732 3331 11111111 345567889999988886 66789999997664432100 1111
Q ss_pred ccccccccccCeEEEccCCeEEEEECCCCEEEEEeC
Q 039428 198 KEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 198 ~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~ 233 (335)
.-..||.++.||.-.++-+.+ .|..++.
T Consensus 619 -------~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 619 -------DPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred -------CCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 126899999999544454444 3455553
No 290
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.57 E-value=20 Score=34.32 Aligned_cols=139 Identities=13% Similarity=0.163 Sum_probs=72.4
Q ss_pred CceeECCCCcEEEEeCCCCeEEEEccCCcEE-EEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCC
Q 039428 157 DDIAVDAEGNAYVTDVVSSKIWKVGVEGQLL-SIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 157 ~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~-~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~ 235 (335)
.++...++|.+++.... |.+++-+.+|... ..... +......++++.++|.+|++... +.+++-+-.+
T Consensus 242 ~~v~~~~dG~~~~vg~~-G~~~~s~d~G~~~W~~~~~---------~~~~~l~~v~~~~dg~l~l~g~~-G~l~~S~d~G 310 (398)
T PLN00033 242 STVNRSPDGDYVAVSSR-GNFYLTWEPGQPYWQPHNR---------ASARRIQNMGWRADGGLWLLTRG-GGLYVSKGTG 310 (398)
T ss_pred eeEEEcCCCCEEEEECC-ccEEEecCCCCcceEEecC---------CCccceeeeeEcCCCCEEEEeCC-ceEEEecCCC
Confidence 34566777777766443 4566665555431 11111 11234678889989988877644 5566554443
Q ss_pred Cce---eEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC---cEEEEEeeeecCCCCCcceEEEE-eC
Q 039428 236 EEE---EVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG---WETASVVAKFNGPTHRVATAATV-KD 308 (335)
Q Consensus 236 ~~~---~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~---~~~~~~~~~~~~p~~~~Pt~va~-~~ 308 (335)
... ....+.... . .....++.+.+++.+|+++. +++ ++...++ |+.......+. ... ..+.+ ++
T Consensus 311 ~~~~~~~f~~~~~~~-~-~~~l~~v~~~~d~~~~a~G~--~G~-v~~s~D~G~tW~~~~~~~~~~--~~l--y~v~f~~~ 381 (398)
T PLN00033 311 LTEEDFDFEEADIKS-R-GFGILDVGYRSKKEAWAAGG--SGI-LLRSTDGGKSWKRDKGADNIA--ANL--YSVKFFDD 381 (398)
T ss_pred CcccccceeecccCC-C-CcceEEEEEcCCCcEEEEEC--CCc-EEEeCCCCcceeEccccCCCC--cce--eEEEEcCC
Confidence 210 112222111 0 12256788888899999976 333 3344444 54422112221 111 25665 46
Q ss_pred CeEEEEe
Q 039428 309 GRVYLSH 315 (335)
Q Consensus 309 g~lyV~~ 315 (335)
++.|+.-
T Consensus 382 ~~g~~~G 388 (398)
T PLN00033 382 KKGFVLG 388 (398)
T ss_pred CceEEEe
Confidence 8888854
No 291
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=89.52 E-value=13 Score=36.41 Aligned_cols=199 Identities=15% Similarity=0.137 Sum_probs=103.0
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECC------CCCCCcceeeeeEEeecCCcCC--CCcceEEEeCCCCeEEEEEecCC
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVP------DEYSPGTVLEEVKLVKEDDVVG--NATMGIAVDRPRNRLLVAFTDVL 123 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~------~g~~~~~v~~~~~~~~~~~~~~--~~p~Gi~~d~~~g~l~v~~~D~~ 123 (335)
-++++.+.+...|....+|.|..|..+ +...|. .+.. -+.| ....+++++....+|..|++|.
T Consensus 348 l~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~-------vl~~-~l~Ghtdavw~l~~s~~~~~Llscs~Dg- 418 (577)
T KOG0642|consen 348 LCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPS-------VLSG-TLLGHTDAVWLLALSSTKDRLLSCSSDG- 418 (577)
T ss_pred EEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcc-------hhcc-ceeccccceeeeeecccccceeeecCCc-
Confidence 578889999998888889999999432 222110 1111 1111 2457999987778888876663
Q ss_pred CCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccC--CcEEEEecCCccccccc
Q 039428 124 GNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVE--GQLLSIIRSPLFTAKEW 200 (335)
Q Consensus 124 ~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~--g~~~~~~~~~~~~~~~~ 200 (335)
.|+.|++...... .+..+. ...+|--+.+-... .+-+++ .+-+.+.++.- +....++++.....+.
T Consensus 419 -----Tvr~w~~~~~~~~---~f~~~~-e~g~Plsvd~~ss~~a~~~~s-~~~~~~~~~~~ev~s~~~~~~s~~~~~~~- 487 (577)
T KOG0642|consen 419 -----TVRLWEPTEESPC---TFGEPK-EHGYPLSVDRTSSRPAHSLAS-FRFGYTSIDDMEVVSDLLIFESSASPGPR- 487 (577)
T ss_pred -----eEEeeccCCcCcc---ccCCcc-ccCCcceEeeccchhHhhhhh-cccccccchhhhhhhheeeccccCCCccc-
Confidence 5888887655441 122222 24566444443222 122222 22233333321 1222223221111110
Q ss_pred cccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEE
Q 039428 201 YKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARL 277 (335)
Q Consensus 201 ~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v 277 (335)
.....|=++..|.+-+-++...++.|..+|-..++ ....... .....+++|+|++|-.+.+++..++++.
T Consensus 488 --~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~-~l~s~~a----~~~svtslai~~ng~~l~s~s~d~sv~l 557 (577)
T KOG0642|consen 488 --RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGK-ILHSMVA----HKDSVTSLAIDPNGPYLMSGSHDGSVRL 557 (577)
T ss_pred --ccCccceEEecCCCCeeEecccCCceecccccccc-cchheee----ccceecceeecCCCceEEeecCCceeeh
Confidence 11123444555555555566677777777766652 1111111 1234689999999887777664455543
No 292
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.52 E-value=17 Score=33.40 Aligned_cols=154 Identities=11% Similarity=-0.015 Sum_probs=66.6
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-.++...++|+.+.++...+-...+|+ ...+ |.........+.+.|.+++ ++.||++. .. ..|
T Consensus 147 ~~~~~r~~dG~~vavs~~G~~~~s~~~-G~~~---------w~~~~r~~~~riq~~gf~~-~~~lw~~~--~G----g~~ 209 (302)
T PF14870_consen 147 INDITRSSDGRYVAVSSRGNFYSSWDP-GQTT---------WQPHNRNSSRRIQSMGFSP-DGNLWMLA--RG----GQI 209 (302)
T ss_dssp EEEEEE-TTS-EEEEETTSSEEEEE-T-T-SS----------EEEE--SSS-EEEEEE-T-TS-EEEEE--TT----TEE
T ss_pred eEeEEECCCCcEEEEECcccEEEEecC-CCcc---------ceEEccCccceehhceecC-CCCEEEEe--CC----cEE
Confidence 345666788886666654445556663 2321 2211111224678999997 79999853 21 235
Q ss_pred EEEE-CCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCe
Q 039428 131 AAYD-LSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 131 ~~~d-~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
..-+ +...+. +.....+........-+++..+++.+|++.. ++.+++=+-+|+.-+... .......+..-
T Consensus 210 ~~s~~~~~~~~-w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~S~DgGktW~~~~-------~~~~~~~n~~~ 280 (302)
T PF14870_consen 210 QFSDDPDDGET-WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLVSTDGGKTWQKDR-------VGENVPSNLYR 280 (302)
T ss_dssp EEEE-TTEEEE-E---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEEESSTTSS-EE-G-------GGTTSSS---E
T ss_pred EEccCCCCccc-cccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEEeCCCCccceECc-------cccCCCCceEE
Confidence 5544 222222 2221211111123346789999999999754 456666555555432110 00111224556
Q ss_pred EEEccCCeEEEEECCCCEEEEE
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKI 231 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~ 231 (335)
|.|.++..-|+-- .+|-|.|+
T Consensus 281 i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 281 IVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp EEEEETTEEEEE--STTEEEEE
T ss_pred EEEcCCCceEEEC-CCcEEEEe
Confidence 6666554444332 34445543
No 293
>PLN02193 nitrile-specifier protein
Probab=89.41 E-value=22 Score=34.71 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=81.1
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-----CCeEEEEccCCcE
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-----SSKIWKVGVEGQL 186 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-----~~~I~~~d~~g~~ 186 (335)
++.|||...-......+.+++||+.+.+-........... ...-..+++ -++++||.... ...++++|+....
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~-~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPT-PRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCC-CccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 6889996321111112469999999875443222210000 111122333 35679997543 2457888887544
Q ss_pred EEEecCCccccccccccccccCeEEEccCCeEEEEECC----CCEEEEEeCCCCceeEEEEeccCCcCCCC-CCeEEEcC
Q 039428 187 LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC----SGNLFKIDIRKEEEEVKLIELRGGSSLSL-GDGLALLS 261 (335)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~----~~~v~~~d~~~~~~~~~~~~~~g~~~~~~-pdGia~d~ 261 (335)
-..+.. +...+....-.++++. ++.+|+.-.. .+.++++|+... ....+...+..+... -.+++. -
T Consensus 306 W~~~~~-----~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~--~W~~~~~~g~~P~~R~~~~~~~-~ 376 (470)
T PLN02193 306 WFHCST-----PGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQD--KWTQVETFGVRPSERSVFASAA-V 376 (470)
T ss_pred EEeCCC-----CCCCCCCCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCC--EEEEeccCCCCCCCcceeEEEE-E
Confidence 332111 1000111112344444 6778875432 267999999887 555554322111111 123333 3
Q ss_pred CCcEEEEecC--------------CCeEEEEEcCCC-cEEE
Q 039428 262 PTKLVVAGNP--------------YPSARLVESSDG-WETA 287 (335)
Q Consensus 262 ~g~l~va~~~--------------~~~~~v~~~~~~-~~~~ 287 (335)
++++||.+.. .+.+++++.... |...
T Consensus 377 ~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 377 GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 4789998442 134666766555 7643
No 294
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.34 E-value=15 Score=32.75 Aligned_cols=140 Identities=13% Similarity=0.038 Sum_probs=75.3
Q ss_pred EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCC--cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCe
Q 039428 62 RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNA--TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWK 139 (335)
Q Consensus 62 ~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~--p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~ 139 (335)
++|+....+++.-+|+..|+ +. |-.. .+.+ ...+.+ ++.+.+ +-.. ..++.++.++|.
T Consensus 25 ~v~igSHs~~~~avd~~sG~-----~~---We~i---lg~RiE~sa~vv---gdfVV~--GCy~----g~lYfl~~~tGs 84 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGN-----LI---WEAI---LGVRIECSAIVV---GDFVVL--GCYS----GGLYFLCVKTGS 84 (354)
T ss_pred EEEEecCCceEEEecCCCCc-----EE---eehh---hCceeeeeeEEE---CCEEEE--EEcc----CcEEEEEecchh
Confidence 44445677888889877666 11 3211 1112 123333 233333 2222 348889998886
Q ss_pred EEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEcc-CCeE
Q 039428 140 RLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHP-DGFL 218 (335)
Q Consensus 140 ~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~-dg~L 218 (335)
..+....... ---...+|+++.+....+.++..|.+|+...--. ++. .-+ +.--.+-++++ ++.|
T Consensus 85 ~~w~f~~~~~-----vk~~a~~d~~~glIycgshd~~~yalD~~~~~cV-yks---kcg-----G~~f~sP~i~~g~~sl 150 (354)
T KOG4649|consen 85 QIWNFVILET-----VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV-YKS---KCG-----GGTFVSPVIAPGDGSL 150 (354)
T ss_pred heeeeeehhh-----hccceEEcCCCceEEEecCCCcEEEecccccceE-Eec---ccC-----CceeccceecCCCceE
Confidence 5533222111 1112567888654444588888999998754322 111 000 01122346777 7799
Q ss_pred EEEECCCCEEEEEeCCCC
Q 039428 219 IVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 219 yvad~~~~~v~~~d~~~~ 236 (335)
|++.+ .|+|.++..+..
T Consensus 151 y~a~t-~G~vlavt~~~~ 167 (354)
T KOG4649|consen 151 YAAIT-AGAVLAVTKNPY 167 (354)
T ss_pred EEEec-cceEEEEccCCC
Confidence 98874 667777777664
No 295
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=89.30 E-value=26 Score=37.18 Aligned_cols=180 Identities=18% Similarity=0.175 Sum_probs=112.4
Q ss_pred eeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 52 ETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
..+..+..++..+.. .....|.+... .+.. .. ... ..+. -.+.|+++|--.+++|- .|.... .+
T Consensus 440 ~~~d~d~~~~~i~~~d~~~~~i~~~~~-~~~~----~~--~~~-~~g~--~~~~~lavD~~~~~~y~--tDe~~~---~i 504 (877)
T KOG1215|consen 440 VALDFDVLNNRIYWADLSDEKICRASQ-DGSS----EC--ELC-GDGL--CIPEGLAVDWIGDNIYW--TDEGNC---LI 504 (877)
T ss_pred eEEEEEecCCEEEEEeccCCeEeeecc-CCCc----cc--eEe-ccCc--cccCcEEEEeccCCcee--cccCCc---ee
Confidence 344445445555555 77788888864 3441 11 112 1221 25789999976788888 565543 35
Q ss_pred EEEECCCCe--EEEEeecCCCccCCCCCCceeECCC-CcEEEEeCC-CCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 131 AAYDLSTWK--RLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVV-SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 131 ~~~d~~~~~--~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~-~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.+.++++.. ++.... ...|..++++|. |.+|.+|+. ..+|-|-..+|.....+... ...-
T Consensus 505 ~v~~~~g~~~~vl~~~~-------l~~~r~~~v~p~~g~~~wtd~~~~~~i~ra~~dg~~~~~l~~~---------~~~~ 568 (877)
T KOG1215|consen 505 EVADLDGSSRKVLVSKD-------LDLPRSIAVDPEKGLMFWTDWGQPPRIERASLDGSERAVLVTN---------GILW 568 (877)
T ss_pred EEEEccCCceeEEEecC-------CCCccceeeccccCeeEEecCCCCchhhhhcCCCCCceEEEeC---------CccC
Confidence 555544432 222111 246778999995 889999987 45788888888665433211 1234
Q ss_pred cCeEEEccCC-eEEEEECCCC-EEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 207 LNGIVYHPDG-FLIVIHMCSG-NLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 207 p~Gia~~~dg-~Lyvad~~~~-~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
|+|++++-.. .+|.+|.... .+.+++.++. ..+ +.... .+.-|.++++-.+ .+|-+
T Consensus 569 p~glt~d~~~~~~yw~d~~~~~~i~~~~~~g~--~r~-~~~~~--~~~~p~~~~~~~~-~iyw~ 626 (877)
T KOG1215|consen 569 PNGLTIDYETDRLYWADAKLDYTIESANMDGQ--NRR-VVDSE--DLPHPFGLSVFED-YIYWT 626 (877)
T ss_pred CCcceEEeecceeEEEcccCCcceeeeecCCC--ceE-Eeccc--cCCCceEEEEecc-eeEEe
Confidence 9999999855 9999999888 7999999987 333 22211 1456889998765 44444
No 296
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.95 E-value=19 Score=33.12 Aligned_cols=195 Identities=13% Similarity=0.079 Sum_probs=90.4
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
.....|++..+.+-|++. ..+.|++=+. .|+. -+. .....+....-.-+.|.++ ++..|++. +.
T Consensus 17 ~~l~dV~F~d~~~G~~VG-~~g~il~T~D-GG~t----W~~-~~~~~~~~~~~~l~~I~f~--~~~g~ivG-~~------ 80 (302)
T PF14870_consen 17 KPLLDVAFVDPNHGWAVG-AYGTILKTTD-GGKT----WQP-VSLDLDNPFDYHLNSISFD--GNEGWIVG-EP------ 80 (302)
T ss_dssp S-EEEEEESSSS-EEEEE-TTTEEEEESS-TTSS-----EE------S-----EEEEEEEE--TTEEEEEE-ET------
T ss_pred CceEEEEEecCCEEEEEe-cCCEEEEECC-CCcc----ccc-cccCCCccceeeEEEEEec--CCceEEEc-CC------
Confidence 356899998766666665 4678888864 3441 111 0111111000124567776 45678753 22
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccC
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLN 208 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~ 208 (335)
.++....++|+.-..+++..+- ...|..+....++.++++. ..+.||+-+-.|+.-+.+..+ .....+
T Consensus 81 g~ll~T~DgG~tW~~v~l~~~l--pgs~~~i~~l~~~~~~l~~-~~G~iy~T~DgG~tW~~~~~~---------~~gs~~ 148 (302)
T PF14870_consen 81 GLLLHTTDGGKTWERVPLSSKL--PGSPFGITALGDGSAELAG-DRGAIYRTTDGGKTWQAVVSE---------TSGSIN 148 (302)
T ss_dssp TEEEEESSTTSS-EE----TT---SS-EEEEEEEETTEEEEEE-TT--EEEESSTTSSEEEEE-S-------------EE
T ss_pred ceEEEecCCCCCcEEeecCCCC--CCCeeEEEEcCCCcEEEEc-CCCcEEEeCCCCCCeeEcccC---------CcceeE
Confidence 1444445566543333332111 2344556655566666653 457888887766543322111 112366
Q ss_pred eEEEccCCeEEEEECCCCEEEEE-eCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEE
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKI-DIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLV 278 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~-d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~ 278 (335)
.+..++||.++... ..|.+++- ++... ..+...... ...-..|.+.+++.||+...+ +.++.-
T Consensus 149 ~~~r~~dG~~vavs-~~G~~~~s~~~G~~--~w~~~~r~~---~~riq~~gf~~~~~lw~~~~G-g~~~~s 212 (302)
T PF14870_consen 149 DITRSSDGRYVAVS-SRGNFYSSWDPGQT--TWQPHNRNS---SRRIQSMGFSPDGNLWMLARG-GQIQFS 212 (302)
T ss_dssp EEEE-TTS-EEEEE-TTSSEEEEE-TT-S--S-EEEE--S---SS-EEEEEE-TTS-EEEEETT-TEEEEE
T ss_pred eEEECCCCcEEEEE-CcccEEEEecCCCc--cceEEccCc---cceehhceecCCCCEEEEeCC-cEEEEc
Confidence 77788898643333 44555544 44333 344444322 133678999999999998763 444433
No 297
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.64 E-value=21 Score=33.30 Aligned_cols=238 Identities=11% Similarity=0.107 Sum_probs=123.9
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE-ecCC------
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF-TDVL------ 123 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~-~D~~------ 123 (335)
-..+.++|.--+.++...+.+|..+|..+++ ++ .+++... .....|.+|. .|.+.+.. .|..
T Consensus 111 vt~v~~hp~~~~v~~as~d~tikv~D~~tg~-----~e--~~LrGHt---~sv~di~~~a-~Gk~l~tcSsDl~~~LWd~ 179 (406)
T KOG0295|consen 111 VTRVIFHPSEALVVSASEDATIKVFDTETGE-----LE--RSLRGHT---DSVFDISFDA-SGKYLATCSSDLSAKLWDF 179 (406)
T ss_pred eeeeeeccCceEEEEecCCceEEEEEccchh-----hh--hhhhccc---cceeEEEEec-CccEEEecCCccchhheeH
Confidence 3566778876655555678999999976665 22 1332222 2467888885 56555542 2331
Q ss_pred -----------CCc--------------------cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC
Q 039428 124 -----------GNK--------------------YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV 172 (335)
Q Consensus 124 -----------~~~--------------------~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~ 172 (335)
++. ...|..|+.+++.-+.. +.++ .....-+.+..||+|+.+.+
T Consensus 180 ~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t--~~~h---~ewvr~v~v~~DGti~As~s 254 (406)
T KOG0295|consen 180 DTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKT--FPGH---SEWVRMVRVNQDGTIIASCS 254 (406)
T ss_pred HHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEe--ccCc---hHhEEEEEecCCeeEEEecC
Confidence 000 12334444444422211 2111 12334577888999999888
Q ss_pred CCCeEEEEccCCcE-EEEecCCcccccc--cccccccc--CeEEEcc-CCeEEEEECCCCEEEEEeCCCCceeEEEEecc
Q 039428 173 VSSKIWKVGVEGQL-LSIIRSPLFTAKE--WYKNVFGL--NGIVYHP-DGFLIVIHMCSGNLFKIDIRKEEEEVKLIELR 246 (335)
Q Consensus 173 ~~~~I~~~d~~g~~-~~~~~~~~~~~~~--~~~~~~~p--~Gia~~~-dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~ 246 (335)
...+|.++-...+. ...+....+..+. ..+.-..| ..-+=+. .+...++-+.++.|...|...+. - .+.+.
T Consensus 255 ~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~-c--L~tL~ 331 (406)
T KOG0295|consen 255 NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM-C--LFTLV 331 (406)
T ss_pred CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe-E--EEEEe
Confidence 77766665544331 0001110111000 00000000 0000011 23566677778888888888763 2 23333
Q ss_pred CCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEeCCeEEEE
Q 039428 247 GGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVKDGRVYLS 314 (335)
Q Consensus 247 g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~ 314 (335)
| . .+...|+++.|.|++.++......++|.+.... +-...+..+ .-+-+++.+.....||.
T Consensus 332 g-h-dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~----~cmk~~~ah-~hfvt~lDfh~~~p~Vv 392 (406)
T KOG0295|consen 332 G-H-DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL----QCMKTLEAH-EHFVTSLDFHKTAPYVV 392 (406)
T ss_pred c-c-cceeeeeEEcCCCeEEEEEecCCcEEEEEeccc----eeeeccCCC-cceeEEEecCCCCceEE
Confidence 3 3 356889999999998888554477888887543 112222212 22335566656667874
No 298
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=88.61 E-value=19 Score=32.91 Aligned_cols=180 Identities=12% Similarity=0.088 Sum_probs=101.0
Q ss_pred EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEE
Q 039428 62 RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRL 141 (335)
Q Consensus 62 ~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~ 141 (335)
.++....+|.|..|+. +.+ +...++ .... ...++|+++| .+.|-.+..+ + ..+..||+=.|+..
T Consensus 99 hLlS~sdDG~i~iw~~--~~W-----~~~~sl--K~H~-~~Vt~lsiHP-S~KLALsVg~---D--~~lr~WNLV~Gr~a 162 (362)
T KOG0294|consen 99 HLLSGSDDGHIIIWRV--GSW-----ELLKSL--KAHK-GQVTDLSIHP-SGKLALSVGG---D--QVLRTWNLVRGRVA 162 (362)
T ss_pred heeeecCCCcEEEEEc--CCe-----EEeeee--cccc-cccceeEecC-CCceEEEEcC---C--ceeeeehhhcCccc
Confidence 3444467899999984 442 211122 2222 2478999998 6777664332 2 35888998777766
Q ss_pred EEeecCCCccCCCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEE
Q 039428 142 FLTQLSGKSEEKSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIV 220 (335)
Q Consensus 142 ~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyv 220 (335)
+..++ .+.+.-+.++|.|. ++|.-...=.||.++...-+.+ ...| ..+..+.+...+.|+|
T Consensus 163 ~v~~L------~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~------i~~~------~r~l~~~~l~~~~L~v 224 (362)
T KOG0294|consen 163 FVLNL------KNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFRE------IENP------KRILCATFLDGSELLV 224 (362)
T ss_pred eeecc------CCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhh------hhcc------ccceeeeecCCceEEE
Confidence 66666 24455599999997 5554433334444443321111 1110 2255566664557777
Q ss_pred EECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEE-E-cCCCcEEEEecCCCeEEEEEcC
Q 039428 221 IHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLA-L-LSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 221 ad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia-~-d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.- .+..|...|.+... ....+.... +..-+|+ + ++++.+.++-.-.+.|+|.+.+
T Consensus 225 G~-d~~~i~~~D~ds~~-~~~~~~AH~----~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 225 GG-DNEWISLKDTDSDT-PLTEFLAHE----NRVKDIASYTNPEHEYLVTASSDGFIKVWDID 281 (362)
T ss_pred ec-CCceEEEeccCCCc-cceeeecch----hheeeeEEEecCCceEEEEeccCceEEEEEcc
Confidence 64 45778888888652 233332221 2345666 3 3456666664434667776654
No 299
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.51 E-value=4 Score=38.69 Aligned_cols=70 Identities=19% Similarity=0.441 Sum_probs=45.7
Q ss_pred EEEeCCCCeEEEEccCCcEEEEecCC-cccccc---ccccccccCeEEEccCC-eEEEEECC---------------CCE
Q 039428 168 YVTDVVSSKIWKVGVEGQLLSIIRSP-LFTAKE---WYKNVFGLNGIVYHPDG-FLIVIHMC---------------SGN 227 (335)
Q Consensus 168 yV~d~~~~~I~~~d~~g~~~~~~~~~-~~~~~~---~~~~~~~p~Gia~~~dg-~Lyvad~~---------------~~~ 227 (335)
||.|..+.-|++++++|+.++.+..+ .+..+. ....-.+-.|++++||+ +||-.-.. .-|
T Consensus 159 ~igdefgP~l~~f~~~Gk~~~~~~~~~~~~~~~~p~g~~~n~gfEglait~d~~~L~~~le~~l~~d~~~~d~~~~~~lR 238 (391)
T COG4222 159 WIGDEFGPYLLEFDANGKLVRVLEVPVRFLPPDNPKGLRNNLGFEGLAITPDGKKLYALLEGALAQDGNKADPTGGSPLR 238 (391)
T ss_pred ccccccCcceEEECCCCccccccccccccCcCCCccccccccceeeEEecCCCceEEEEEeccccccccccCcccccceE
Confidence 88899999999999999887653221 111111 11122357899999999 78853211 247
Q ss_pred EEEEeCCCCc
Q 039428 228 LFKIDIRKEE 237 (335)
Q Consensus 228 v~~~d~~~~~ 237 (335)
+..+|+...+
T Consensus 239 il~~d~~~~~ 248 (391)
T COG4222 239 ILEYDLATKQ 248 (391)
T ss_pred EEEEecccCc
Confidence 8888887763
No 300
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=88.02 E-value=27 Score=34.34 Aligned_cols=117 Identities=11% Similarity=0.159 Sum_probs=75.9
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc--EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN--AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~--lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.|+-++.++.... +++.. .+-..|++..++|+ ..|-..+...+..+|++++.+--++. .|
T Consensus 252 ~Lyll~t~g~s~~--V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~e----gp-------- 313 (566)
T KOG2315|consen 252 TLYLLATQGESVS--VPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPE----GP-------- 313 (566)
T ss_pred eEEEEEecCceEE--EecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCC----CC--------
Confidence 5777776643333 34421 23457899999995 44456778899999999987652221 11
Q ss_pred cCeEEEccCC-eEEEEECCC--CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 207 LNGIVYHPDG-FLIVIHMCS--GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 207 p~Gia~~~dg-~Lyvad~~~--~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
-|.+-++|.| .|.++-.++ |.|-.+|....+ .+..+...+ -.=+.+.|||..+++..
T Consensus 314 RN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K-~i~~~~a~~------tt~~eW~PdGe~flTAT 373 (566)
T KOG2315|consen 314 RNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRK-LIAKFKAAN------TTVFEWSPDGEYFLTAT 373 (566)
T ss_pred ccceEECCCCCEEEEeecCCCCCceEEEeccchh-hccccccCC------ceEEEEcCCCcEEEEEe
Confidence 4888999999 556676654 788888887753 333333222 33467779998777754
No 301
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=87.89 E-value=19 Score=32.06 Aligned_cols=100 Identities=18% Similarity=0.220 Sum_probs=55.6
Q ss_pred ceEEEEECCCCeEEEEeecCCC-ccCCCCCCceeECC--C-CcEE--EEeCCCCeEEEEcc----CCcEEEEecCCcccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGK-SEEKSTADDIAVDA--E-GNAY--VTDVVSSKIWKVGV----EGQLLSIIRSPLFTA 197 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~-~~~~~~p~~~~vd~--~-G~ly--V~d~~~~~I~~~d~----~g~~~~~~~~~~~~~ 197 (335)
-.++.+|++.+.+....+...+ ......+.|++.-+ . |.+| |++.. |.|..+.. +|+....+- ..|+.
T Consensus 126 i~~y~Idp~~~~L~sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~q-G~~~Qy~l~d~gnGkv~~k~v-R~fk~ 203 (364)
T COG4247 126 IVFYKIDPNPQYLESITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQ-GDIAQYKLIDQGNGKVGTKLV-RQFKI 203 (364)
T ss_pred EEEEEeCCCccceeeccCCCCccccCcccceeeEEEecCCcCcEEEEEecCC-CceeEEEEEecCCceEcceee-Eeeec
Confidence 4567788887766544443221 12256778888754 3 6544 44433 55554432 122211000 12332
Q ss_pred ccccccccccCeEEEccC-CeEEEEECCCCEEEEEeCCCC
Q 039428 198 KEWYKNVFGLNGIVYHPD-GFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 198 ~~~~~~~~~p~Gia~~~d-g~Lyvad~~~~~v~~~d~~~~ 236 (335)
+ ....|+..+.+ |+||+++. +-.||++..+.+
T Consensus 204 ~------tQTEG~VaDdEtG~LYIaeE-dvaiWK~~Aep~ 236 (364)
T COG4247 204 P------TQTEGMVADDETGFLYIAEE-DVAIWKYEAEPN 236 (364)
T ss_pred C------CcccceeeccccceEEEeec-cceeeecccCCC
Confidence 1 24678888865 59999984 556999987764
No 302
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=87.78 E-value=2 Score=41.69 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=63.2
Q ss_pred CCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEe
Q 039428 153 KSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKID 232 (335)
Q Consensus 153 ~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d 232 (335)
...+|..++.+||....+=+..+.+.+||-+...+. ..+.. =+.+.-.++|+|||..+++-..+.-|.++.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl----g~mkS-----YFGGLLCvcWSPDGKyIvtGGEDDLVtVwS 360 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL----GVMKS-----YFGGLLCVCWSPDGKYIVTGGEDDLVTVWS 360 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHH----HHHHh-----hccceEEEEEcCCccEEEecCCcceEEEEE
Confidence 357889999999987777788888888888765433 11111 123477899999998888887777666665
Q ss_pred CCCCceeEEEEeccCCcCCCCCCeEEEcC
Q 039428 233 IRKEEEEVKLIELRGGSSLSLGDGLALLS 261 (335)
Q Consensus 233 ~~~~~~~~~~~~~~g~~~~~~pdGia~d~ 261 (335)
.... +++....++ -.....+++|+
T Consensus 361 f~er----RVVARGqGH-kSWVs~VaFDp 384 (636)
T KOG2394|consen 361 FEER----RVVARGQGH-KSWVSVVAFDP 384 (636)
T ss_pred eccc----eEEEecccc-ccceeeEeecc
Confidence 5433 444431112 23466788886
No 303
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.50 E-value=35 Score=34.57 Aligned_cols=154 Identities=23% Similarity=0.200 Sum_probs=94.3
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d 181 (335)
..+.+++-|++..|.++ ++ ++++.||+..|.+... +.+. ....+-++...||..|.+.+....|..++
T Consensus 14 ci~d~afkPDGsqL~lA-Ag------~rlliyD~ndG~llqt--LKgH---KDtVycVAys~dGkrFASG~aDK~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AG------SRLLVYDTSDGTLLQP--LKGH---KDTVYCVAYAKDGKRFASGSADKSVIIWT 81 (1081)
T ss_pred chheeEECCCCceEEEe-cC------CEEEEEeCCCcccccc--cccc---cceEEEEEEccCCceeccCCCceeEEEec
Confidence 67899999865566664 33 4699999988765522 2211 34567799999999999888777777777
Q ss_pred cCCc-EEEEecCC-----ccc-----------------ccc-----ccccccccCeEEEccCCeEEEEECCCCEEEEEeC
Q 039428 182 VEGQ-LLSIIRSP-----LFT-----------------AKE-----WYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 182 ~~g~-~~~~~~~~-----~~~-----------------~~~-----~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~ 233 (335)
++-+ .++.-... .|. +++ ........++-++..||+.+.-...+|.|..=+.
T Consensus 82 ~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk 161 (1081)
T KOG1538|consen 82 SKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNK 161 (1081)
T ss_pred ccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecC
Confidence 6521 22211000 010 011 0112234789999999987777778888876555
Q ss_pred CCCceeEEEEeccCCcCCCCCCeEEEcCC------CcEEEEec
Q 039428 234 RKEEEEVKLIELRGGSSLSLGDGLALLSP------TKLVVAGN 270 (335)
Q Consensus 234 ~~~~~~~~~~~~~g~~~~~~pdGia~d~~------g~l~va~~ 270 (335)
.++ ....+..+|+. -....++++.|+ ..+-|+++
T Consensus 162 ~gE--ek~~I~Rpgg~-Nspiwsi~~~p~sg~G~~di~aV~DW 201 (1081)
T KOG1538|consen 162 NGE--EKVKIERPGGS-NSPIWSICWNPSSGEGRNDILAVADW 201 (1081)
T ss_pred CCC--cceEEeCCCCC-CCCceEEEecCCCCCCccceEEEEec
Confidence 554 44556655522 223477887765 23555565
No 304
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.45 E-value=13 Score=34.95 Aligned_cols=165 Identities=12% Similarity=0.130 Sum_probs=82.9
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEe--CCCCeEEEEEecCCCCcc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVD--RPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d--~~~g~l~v~~~D~~~~~~ 127 (335)
--+.+.++++|..+..-..+ ...+|+..++.. +.+..-.+.+. .-.-+.+. +++..|+++..-...
T Consensus 188 eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~----~a~~t~~~k~~----~~~~cRF~~d~~~~~l~laa~~~~~--- 255 (398)
T KOG0771|consen 188 EVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA----LARKTPFSKDE----MFSSCRFSVDNAQETLRLAASQFPG--- 255 (398)
T ss_pred ccccceeCCCCcEEEEecCC-ceEEEEeccCch----hhhcCCcccch----hhhhceecccCCCceEEEEEecCCC---
Confidence 45789999999755444333 666666555642 11100001111 11223332 223467775321111
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
..|..+|.....--........-..+.....++|+.+|++..-.+..|.|..++...-....+ .+ .......
T Consensus 256 ~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~-----vk---~aH~~~V 327 (398)
T KOG0771|consen 256 GGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQY-----VK---EAHLGFV 327 (398)
T ss_pred CceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEe-----eh---hhheeee
Confidence 235555543211100001111111245667799999999888888999999998764322211 11 0122357
Q ss_pred CeEEEccCCeEEEEECCCC--EEEEEeCC
Q 039428 208 NGIVYHPDGFLIVIHMCSG--NLFKIDIR 234 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~--~v~~~d~~ 234 (335)
.+++|+||-+-..+-+..+ .|.++..+
T Consensus 328 T~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 328 TGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred eeEEEcCCcCcccccccCCceeEEEEeec
Confidence 8999999874333333333 45555543
No 305
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=87.43 E-value=19 Score=31.41 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=50.4
Q ss_pred CCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeC
Q 039428 154 STADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~ 233 (335)
.....+++||.|++.++.........+|..|.... +.|.+ .......+-|+|.-+...+-+-..+|..-|+
T Consensus 232 savaav~vdpsgrll~sg~~dssc~lydirg~r~i----q~f~p-----hsadir~vrfsp~a~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 232 SAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI----QRFHP-----HSADIRCVRFSPGAHYLLTCSYDMKIKLTDL 302 (350)
T ss_pred ceeEEEEECCCcceeeeccCCCceEEEEeeCCcee----eeeCC-----CccceeEEEeCCCceEEEEecccceEEEeec
Confidence 45667999999999999877777777887665432 12331 1223678889987744445556677877787
Q ss_pred CCC
Q 039428 234 RKE 236 (335)
Q Consensus 234 ~~~ 236 (335)
.+.
T Consensus 303 qgd 305 (350)
T KOG0641|consen 303 QGD 305 (350)
T ss_pred ccc
Confidence 775
No 306
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=86.60 E-value=10 Score=34.08 Aligned_cols=185 Identities=15% Similarity=0.075 Sum_probs=92.8
Q ss_pred CccchhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcCCCc-eeEEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCC
Q 039428 1 MALSLCFTKTLLFFFIISAIPIAYIISIELAIAMAKPAT-HVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPD 79 (335)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~d~~~-~~~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~ 79 (335)
|+++..+.|.+ +++.++.+|+.+--. ..+.+++ ..++++... ---+++|..++++.+.-...+.|..-|+ .
T Consensus 1 m~~~~s~~~av-lvl~fav~~v~~s~~-----p~~ap~p~~~velp~~s-~~l~ia~~~~g~~gwlVg~rgtiletdd-~ 72 (339)
T COG4447 1 MALSSSTRRAV-LVLGFAVICVLCSAV-----PLIAPNPWTDVELPTLS-PTLDIAFTESGSHGWLVGGRGTILETDD-G 72 (339)
T ss_pred CchHHHHHHHH-HHHhHHhheeccccc-----cccCCCcceeeeccccC-cccceeEeecCcceEEEcCcceEEEecC-C
Confidence 67777666654 456677777764322 2223322 224443322 1247889888888877767789999874 3
Q ss_pred CCCCcceeeeeEEeecCCcCC-CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCc
Q 039428 80 EYSPGTVLEEVKLVKEDDVVG-NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADD 158 (335)
Q Consensus 80 g~~~~~v~~~~~~~~~~~~~~-~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~ 158 (335)
+.. |.+.....+ ..-+.+.+.. ..=|+. ++. +.|++- .+.|+....+.... +....|.+
T Consensus 73 g~t---------w~qal~~~gr~~f~sv~f~~--~egw~v-----Ge~-sqll~T-~DgGqsWARi~~~e--~~eg~~~s 132 (339)
T COG4447 73 GIT---------WAQALDFLGRHAFHSVSFLG--MEGWIV-----GEP-SQLLHT-TDGGQSWARIPLSE--KLEGFPDS 132 (339)
T ss_pred ccc---------chhhhchhhhhheeeeeeec--cccccc-----CCc-ceEEEe-cCCCcchhhchhhc--CCCCCcce
Confidence 431 211111111 1123333331 122332 111 345543 34555443333321 12567888
Q ss_pred eeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEE
Q 039428 159 IAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIH 222 (335)
Q Consensus 159 ~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad 222 (335)
|.+-.+.+ ..++| .+.|++-+-.|+.-+.+. +.. -....||.|+.+.|+ .+-|..
T Consensus 133 I~f~d~q~g~m~gd--~Gail~T~DgGk~Wk~l~-e~~------v~~~~~n~ia~s~dng~vaVg~ 189 (339)
T COG4447 133 ITFLDDQRGEMLGD--QGAILKTTDGGKNWKALV-EKA------VGLAVPNEIARSADNGYVAVGA 189 (339)
T ss_pred eEEecchhhhhhcc--cceEEEecCCcccHhHhc-ccc------cchhhhhhhhhhccCCeEEEec
Confidence 88765544 44455 458888876665432111 000 012347777777776 454543
No 307
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=86.47 E-value=0.58 Score=28.53 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=16.2
Q ss_pred CCCeEEEcCCCcEEEEec
Q 039428 253 LGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 253 ~pdGia~d~~g~l~va~~ 270 (335)
.+.+|++|++|++||++.
T Consensus 14 ~~~~IavD~~GNiYv~G~ 31 (38)
T PF06739_consen 14 YGNGIAVDSNGNIYVTGY 31 (38)
T ss_pred eEEEEEECCCCCEEEEEe
Confidence 488999999999999965
No 308
>PRK13684 Ycf48-like protein; Provisional
Probab=86.46 E-value=28 Score=32.39 Aligned_cols=105 Identities=12% Similarity=0.085 Sum_probs=58.1
Q ss_pred CCCCceeECCCCcEEEEeCCCCeEEEEc-cCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEe
Q 039428 154 STADDIAVDAEGNAYVTDVVSSKIWKVG-VEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKID 232 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~I~~~d-~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d 232 (335)
...++++++++|.+++. ...|.+++-. ..|+.-..... +.....+++++.+++.+|+... .+.+..-.
T Consensus 173 g~~~~i~~~~~g~~v~~-g~~G~i~~s~~~gg~tW~~~~~---------~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s 241 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAV-SSRGNFYSTWEPGQTAWTPHQR---------NSSRRLQSMGFQPDGNLWMLAR-GGQIRFND 241 (334)
T ss_pred ceEEEEEECCCCeEEEE-eCCceEEEEcCCCCCeEEEeeC---------CCcccceeeeEcCCCCEEEEec-CCEEEEcc
Confidence 45678888888765544 4557787763 33332221111 1223578999999998877653 35443223
Q ss_pred CCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 233 IRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 233 ~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
.+++. ..+.+..+.........++++.+++.+|++..
T Consensus 242 ~d~G~-sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 242 PDDLE-SWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred CCCCC-ccccccCCccccccceeeEEEcCCCCEEEEcC
Confidence 44432 33322222100012245678888889999965
No 309
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=86.45 E-value=23 Score=31.54 Aligned_cols=144 Identities=18% Similarity=0.234 Sum_probs=68.7
Q ss_pred CCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEE--EEEeCCCCceeEE
Q 039428 164 EGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNL--FKIDIRKEEEEVK 241 (335)
Q Consensus 164 ~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v--~~~d~~~~~~~~~ 241 (335)
+-.+.++.-..+.+.++|.+|+.+..+..+.+..-+ .--.+..+|=+++ -.-.+|..+++| |+||++.+ .++
T Consensus 66 ~kS~vItt~Kk~Gl~VYDLsGkqLqs~~~Gk~NNVD-LrygF~LgG~~id---iaaASdR~~~~i~~y~Idp~~~--~L~ 139 (364)
T COG4247 66 DKSLVITTVKKAGLRVYDLSGKQLQSVNPGKYNNVD-LRYGFQLGGQSID---IAAASDRQNDKIVFYKIDPNPQ--YLE 139 (364)
T ss_pred CcceEEEeeccCCeEEEecCCCeeeecCCCcccccc-cccCcccCCeEEE---EEecccccCCeEEEEEeCCCcc--cee
Confidence 334445544556677777777766543222111000 0001113333333 112234445554 55666555 455
Q ss_pred EEeccC---CcCCCCCCeEEEcCC---CcEEEE-ecCCCeEEEEE---cCCCcEEEEEeeeecCCCCCcceEEEEe--CC
Q 039428 242 LIELRG---GSSLSLGDGLALLSP---TKLVVA-GNPYPSARLVE---SSDGWETASVVAKFNGPTHRVATAATVK--DG 309 (335)
Q Consensus 242 ~~~~~g---~~~~~~pdGia~d~~---g~l~va-~~~~~~~~v~~---~~~~~~~~~~~~~~~~p~~~~Pt~va~~--~g 309 (335)
.+.-+. ......+.|+++-.+ |.+||- +...+.++-+. ...|....+.+..|..|... .++..+ -|
T Consensus 140 sitD~n~p~ss~~s~~YGl~lyrs~ktgd~yvfV~~~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQT--EG~VaDdEtG 217 (364)
T COG4247 140 SITDSNAPYSSSSSSAYGLALYRSPKTGDYYVFVNRRQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQT--EGMVADDETG 217 (364)
T ss_pred eccCCCCccccCcccceeeEEEecCCcCcEEEEEecCCCceeEEEEEecCCceEcceeeEeeecCCcc--cceeeccccc
Confidence 553221 112456899999754 555555 22224444433 33345555666666655421 244343 68
Q ss_pred eEEEEe
Q 039428 310 RVYLSH 315 (335)
Q Consensus 310 ~lyV~~ 315 (335)
.|||++
T Consensus 218 ~LYIae 223 (364)
T COG4247 218 FLYIAE 223 (364)
T ss_pred eEEEee
Confidence 999954
No 310
>PF14339 DUF4394: Domain of unknown function (DUF4394)
Probab=86.17 E-value=23 Score=31.17 Aligned_cols=167 Identities=11% Similarity=0.061 Sum_probs=91.6
Q ss_pred cceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEe-e--cCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 49 FLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLV-K--EDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 49 ~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~-~--~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
-.--||.+.|....+|.-...++||.+|+.++.. .. +- . .+.+. ....|+.|+|.-+||.|.+. .
T Consensus 27 e~l~GID~Rpa~G~LYgl~~~g~lYtIn~~tG~a-----T~--vg~s~~~~al~-g~~~gvDFNP~aDRlRvvs~-~--- 94 (236)
T PF14339_consen 27 ESLVGIDFRPANGQLYGLGSTGRLYTINPATGAA-----TP--VGASPLTVALS-GTAFGVDFNPAADRLRVVSN-T--- 94 (236)
T ss_pred CeEEEEEeecCCCCEEEEeCCCcEEEEECCCCeE-----EE--eeccccccccc-CceEEEecCcccCcEEEEcc-C---
Confidence 3457999999977777776789999999766652 11 20 1 12222 23789999998899999743 2
Q ss_pred ccceEEEEECCCCeEE-EEeecCCC-cc--CCCCC--CceeECC-----C-C-cEEEEeCCCCeEEEEc-cCCcEEEEec
Q 039428 126 KYSALAAYDLSTWKRL-FLTQLSGK-SE--EKSTA--DDIAVDA-----E-G-NAYVTDVVSSKIWKVG-VEGQLLSIIR 191 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~-~~~~~~~~-~~--~~~~p--~~~~vd~-----~-G-~lyV~d~~~~~I~~~d-~~g~~~~~~~ 191 (335)
.+=+|+++++|.+. .-.++..+ +. ....| -+.+... . . .+|--|...+++++-+ |+...+...+
T Consensus 95 --GqNlR~npdtGav~~~Dg~L~y~~gd~~~G~~p~v~aaAYTNs~~g~~t~TtLy~ID~~~~~Lv~Q~ppN~GtL~~vG 172 (236)
T PF14339_consen 95 --GQNLRLNPDTGAVTIVDGNLAYAAGDMNAGTTPGVTAAAYTNSFAGATTSTTLYDIDTTLDALVTQNPPNDGTLNTVG 172 (236)
T ss_pred --CcEEEECCCCCCceeccCccccCCCccccCCCCceEEEEEecccCCCccceEEEEEecCCCeEEEecCCCCCcEEeee
Confidence 24678899988743 11122111 00 00011 1222211 1 2 3677777777777773 3433333222
Q ss_pred CCccccccccccccccCeEEEccC--C--eEEEEE-CCCCEEEEEeCCCC
Q 039428 192 SPLFTAKEWYKNVFGLNGIVYHPD--G--FLIVIH-MCSGNLFKIDIRKE 236 (335)
Q Consensus 192 ~~~~~~~~~~~~~~~p~Gia~~~d--g--~Lyvad-~~~~~v~~~d~~~~ 236 (335)
.-.. ....-.|.-+.++ + ..|... ....++|++|+..+
T Consensus 173 ~LGv-------d~~~~~gFDI~~~~~~~~~a~a~~~~~~~~LY~vdL~TG 215 (236)
T PF14339_consen 173 PLGV-------DAAGDAGFDIAGDGNGGNAAYAVLGVGGSGLYTVDLTTG 215 (236)
T ss_pred cccc-------ccCcccceeeecCCCcceEEEEEecCCCcEEEEEECCCc
Confidence 1101 1122455656541 2 344333 22378999999987
No 311
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A.
Probab=86.12 E-value=23 Score=31.06 Aligned_cols=102 Identities=18% Similarity=0.163 Sum_probs=53.7
Q ss_pred CCCCceeECCCCcEEEEeCCCCeEEEEccC---CcE----EEEecCCccccccccccccccCeEEEccCCeEEEEECCCC
Q 039428 154 STADDIAVDAEGNAYVTDVVSSKIWKVGVE---GQL----LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSG 226 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~---g~~----~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~ 226 (335)
.....|+..|+|++|+... +.+|+..+. +.. .+.+++.. -..-.-|.+++.|.||.-. .++
T Consensus 34 ~~~~~i~~~P~g~lY~I~~--~~lY~~~~~~~~~~~~~~~~~~Ig~g~---------W~~F~~i~~d~~G~LYaV~-~~G 101 (229)
T PF14517_consen 34 NNFRDIAAGPNGRLYAIRN--DGLYRGSPSSSGGNTWDSGSKQIGDGG---------WNSFKFIFFDPTGVLYAVT-PDG 101 (229)
T ss_dssp TT-SEEEE-TTS-EEEEET--TEEEEES---STT--HHHH-EEEE-S----------GGG-SEEEE-TTS-EEEEE-TT-
T ss_pred cccceEEEcCCceEEEEEC--CceEEecCCccCcccccccCcccccCc---------ccceeEEEecCCccEEEec-ccc
Confidence 4566799999999999873 488888422 111 12222220 1124589999999999655 478
Q ss_pred EEEEEeCCCCce------eEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 227 NLFKIDIRKEEE------EVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 227 ~v~~~d~~~~~~------~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
+|+|.+.-...+ ..+.+...+ ....+-+..+++|.||....
T Consensus 102 ~lyR~~~~~~~~~~W~~~~~~~iG~~G---W~~f~~vfa~~~GvLY~i~~ 148 (229)
T PF14517_consen 102 KLYRHPRPTNGSDNWIGGSGKKIGGTG---WNDFDAVFAGPNGVLYAITP 148 (229)
T ss_dssp EEEEES---STT--HHH-HSEEEE-SS---GGGEEEEEE-TTS-EEEEET
T ss_pred ceeeccCCCccCcchhhccceecccCC---CccceEEEeCCCccEEEEcC
Confidence 899987755310 123332222 34467788899999998876
No 312
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=86.09 E-value=45 Score=34.46 Aligned_cols=164 Identities=16% Similarity=0.109 Sum_probs=94.0
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCC-CCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDE-YSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g-~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
...+++|.++.+.+...+|+|.+|..- + .. . -...+.+-+.- ...+++.+..+...||- +... ..+
T Consensus 209 t~~~~spn~~~~Aa~d~dGrI~vw~d~-~~~~--~-~~t~t~lHWH~---~~V~~L~fS~~G~~LlS--GG~E----~VL 275 (792)
T KOG1963|consen 209 TCVALSPNERYLAAGDSDGRILVWRDF-GSSD--D-SETCTLLHWHH---DEVNSLSFSSDGAYLLS--GGRE----GVL 275 (792)
T ss_pred eeEEeccccceEEEeccCCcEEEEecc-cccc--c-cccceEEEecc---cccceeEEecCCceEee--cccc----eEE
Confidence 567999998877666668999999743 4 10 0 00011222221 24578999874444444 3221 357
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE-EEEecCCccccc--c-ccccccc
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAK--E-WYKNVFG 206 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~--~-~~~~~~~ 206 (335)
.+|..++++..+.=.+ ....-++.+.||+++|..-...+.|..+..-.-. ...+. .+..+ . ......-
T Consensus 276 v~Wq~~T~~kqfLPRL------gs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIs--gi~~~~~~~k~~~~~l 347 (792)
T KOG1963|consen 276 VLWQLETGKKQFLPRL------GSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTIS--GIKPPTPSTKTRPQSL 347 (792)
T ss_pred EEEeecCCCccccccc------CCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhcc--CccCCCcccccccccc
Confidence 7888887764332112 1234579999999988877777888888763222 11121 11111 0 0111234
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
+.+++++|.-+..+=+...+.|.-||+-..
T Consensus 348 ~t~~~idpr~~~~vln~~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 348 TTGVSIDPRTNSLVLNGHPGHVQFYDLYTD 377 (792)
T ss_pred ceeEEEcCCCCceeecCCCceEEEEecccc
Confidence 788999994444444556777877877665
No 313
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=85.56 E-value=4.1 Score=24.09 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=27.2
Q ss_pred EEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEE
Q 039428 43 QYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVL 76 (335)
Q Consensus 43 ~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d 76 (335)
.+.+......+++|+++++.++++..++.|..||
T Consensus 6 ~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 6 TFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3445555678999999999888888899999885
No 314
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=85.45 E-value=32 Score=32.24 Aligned_cols=122 Identities=11% Similarity=0.035 Sum_probs=75.0
Q ss_pred EEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEec
Q 039428 42 YQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTD 121 (335)
Q Consensus 42 ~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D 121 (335)
+.+.+-.---..+.|++. ...|...++.+|.+||...+.- .. .+..+ ...+.|...+ ..+|.++. .
T Consensus 254 vtl~GHt~~Vs~V~w~d~-~v~yS~SwDHTIk~WDletg~~----~~---~~~~~----ksl~~i~~~~-~~~Ll~~g-s 319 (423)
T KOG0313|consen 254 VTLEGHTEPVSSVVWSDA-TVIYSVSWDHTIKVWDLETGGL----KS---TLTTN----KSLNCISYSP-LSKLLASG-S 319 (423)
T ss_pred EEecccccceeeEEEcCC-CceEeecccceEEEEEeecccc----ee---eeecC----cceeEeeccc-ccceeeec-C
Confidence 334443334478888874 4566777899999999765551 11 11111 2446788886 56666642 2
Q ss_pred CCCCccceEEEEECCCCeEEE-EeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCC
Q 039428 122 VLGNKYSALAAYDLSTWKRLF-LTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEG 184 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g 184 (335)
.. .-+..|||+++.-.. .-.+.+ . .+....+.-.|.. .++++.+..+.+..+|-..
T Consensus 320 sd----r~irl~DPR~~~gs~v~~s~~g--H-~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS 377 (423)
T KOG0313|consen 320 SD----RHIRLWDPRTGDGSVVSQSLIG--H-KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRS 377 (423)
T ss_pred CC----CceeecCCCCCCCceeEEeeec--c-hhhhhheecCCCCceEEEEEecCCeEEEEEecc
Confidence 21 238889998764221 112211 1 3566777778865 6899999988888888653
No 315
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=85.00 E-value=25 Score=34.56 Aligned_cols=100 Identities=11% Similarity=0.194 Sum_probs=62.2
Q ss_pred eeeEEcCCCCEEEEE--ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 52 ETAKWDDVGRRFLVS--FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 52 egia~d~~g~~~~~~--~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
..+.|.++|+-|.+. ....++..+|. .+. ++..+++- .-+-+.++| .|++.+. +..++-+ +.
T Consensus 274 hdv~W~~s~~EF~VvyGfMPAkvtifnl-r~~---------~v~df~eg---pRN~~~fnp-~g~ii~l-AGFGNL~-G~ 337 (566)
T KOG2315|consen 274 HDVTWSPSGREFAVVYGFMPAKVTIFNL-RGK---------PVFDFPEG---PRNTAFFNP-HGNIILL-AGFGNLP-GD 337 (566)
T ss_pred eEEEECCCCCEEEEEEecccceEEEEcC-CCC---------EeEeCCCC---CccceEECC-CCCEEEE-eecCCCC-Cc
Confidence 788999999888887 44578888874 565 13334431 236788887 6777664 4444333 56
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS 174 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~ 174 (335)
+-+||....+.+..... ....=....|||..++|-+..
T Consensus 338 mEvwDv~n~K~i~~~~a-------~~tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 338 MEVWDVPNRKLIAKFKA-------ANTTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred eEEEeccchhhcccccc-------CCceEEEEcCCCcEEEEEecc
Confidence 88999877555422111 111225567999877776543
No 316
>KOG4328 consensus WD40 protein [Function unknown]
Probab=84.98 E-value=38 Score=32.58 Aligned_cols=165 Identities=15% Similarity=0.044 Sum_probs=93.8
Q ss_pred ceeeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~ 128 (335)
--.++++.|....++.+ ..+++.-.||...-.. . -+ +++..-... ...+...++|.+|+|..+..| +
T Consensus 324 KI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~-K--~s--p~lst~~Hr-rsV~sAyFSPs~gtl~TT~~D------~ 391 (498)
T KOG4328|consen 324 KITSVALNPVCPWFLATASLDQTAKIWDLRQLRG-K--AS--PFLSTLPHR-RSVNSAYFSPSGGTLLTTCQD------N 391 (498)
T ss_pred ccceeecCCCCchheeecccCcceeeeehhhhcC-C--CC--cceeccccc-ceeeeeEEcCCCCceEeeccC------C
Confidence 35789999998877777 6677777777432110 0 00 122211111 346788899988885553333 3
Q ss_pred eEEEEECC----CCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEE-EecCCcccccccccc
Q 039428 129 ALAAYDLS----TWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLS-IIRSPLFTAKEWYKN 203 (335)
Q Consensus 129 ~v~~~d~~----~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~-~~~~~~~~~~~~~~~ 203 (335)
.|.+||-. --+....+.-+.....--.|--.+.||+-++++...+...|=+||..|+... .+.++...
T Consensus 392 ~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~------- 464 (498)
T KOG4328|consen 392 EIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS------- 464 (498)
T ss_pred ceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-------
Confidence 59999873 1111111111100001233455778998887777778888999999987633 12222111
Q ss_pred ccccCeEEEccCCe-EEEEECCCCEEEEEeCC
Q 039428 204 VFGLNGIVYHPDGF-LIVIHMCSGNLFKIDIR 234 (335)
Q Consensus 204 ~~~p~Gia~~~dg~-Lyvad~~~~~v~~~d~~ 234 (335)
.-|-=+.+.|-+. +.......|+||+|.-+
T Consensus 465 -tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 465 -TIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred -ccccceeecccccceeccCCccceEEEEecC
Confidence 1133456777664 55555567888887544
No 317
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=84.49 E-value=45 Score=33.11 Aligned_cols=172 Identities=10% Similarity=0.091 Sum_probs=99.9
Q ss_pred eeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCC------cceeee---------------eEEeecCCcCC--------C
Q 039428 52 ETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSP------GTVLEE---------------VKLVKEDDVVG--------N 101 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~------~~v~~~---------------~~~~~~~~~~~--------~ 101 (335)
..|.+++||+.++.+ ....+|.++|..+-... .+++.- -+++.+....| .
T Consensus 55 t~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RIP~ 134 (703)
T KOG2321|consen 55 TRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRIPK 134 (703)
T ss_pred ceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeecCc
Confidence 578899999877777 77788888875422100 000100 00011111111 0
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d 181 (335)
....|..+..+-.||++.+ + ..|++++++-|..+ .++... ....|-+.+.+-..+..+.+..|.|--||
T Consensus 135 ~GRDm~y~~~scDly~~gs--g----~evYRlNLEqGrfL--~P~~~~---~~~lN~v~in~~hgLla~Gt~~g~VEfwD 203 (703)
T KOG2321|consen 135 FGRDMKYHKPSCDLYLVGS--G----SEVYRLNLEQGRFL--NPFETD---SGELNVVSINEEHGLLACGTEDGVVEFWD 203 (703)
T ss_pred CCccccccCCCccEEEeec--C----cceEEEEccccccc--cccccc---cccceeeeecCccceEEecccCceEEEec
Confidence 1245666654566777422 2 35999999877655 222111 24567788888766888888899999999
Q ss_pred cCCcEEE-EecCC-ccc-cccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 182 VEGQLLS-IIRSP-LFT-AKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 182 ~~g~~~~-~~~~~-~~~-~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
+..+... .+.-. ... .| .......+..|.|+.+| ++-| -+.+|+++.+|+...
T Consensus 204 pR~ksrv~~l~~~~~v~s~p-g~~~~~svTal~F~d~gL~~aV-Gts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 204 PRDKSRVGTLDAASSVNSHP-GGDAAPSVTALKFRDDGLHVAV-GTSTGSVLIYDLRAS 260 (703)
T ss_pred chhhhhheeeecccccCCCc-cccccCcceEEEecCCceeEEe-eccCCcEEEEEcccC
Confidence 9754322 11110 000 01 11233458899999888 5554 457889999999987
No 318
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=84.48 E-value=42 Score=34.34 Aligned_cols=75 Identities=16% Similarity=0.084 Sum_probs=52.0
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
..-++++|.-.+.++-+.+..|..|++..+| .++.|+...+. -+.+--+.+||.|.+.++.-....+.+++...+
T Consensus 599 lYDm~Vdp~~k~v~t~cQDrnirif~i~sgK-q~k~FKgs~~~-eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDRNIRIFDIESGK-QVKSFKGSRDH-EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred EEEeeeCCCcceEEEEecccceEEEeccccc-eeeeecccccC-CCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 5678999887777788888889999999886 67777632211 234566788998876665332355777776443
No 319
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.42 E-value=48 Score=33.32 Aligned_cols=157 Identities=10% Similarity=0.072 Sum_probs=96.8
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-.++.++|..-....+..+|.|..|+- +++. .+. -+...+. ....-.+-++.+-+.+ .+|. .+|
T Consensus 16 VKsVd~HPtePw~la~LynG~V~IWny-etqt---mVk---sfeV~~~---PvRa~kfiaRknWiv~-GsDD-----~~I 79 (794)
T KOG0276|consen 16 VKSVDFHPTEPWILAALYNGDVQIWNY-ETQT---MVK---SFEVSEV---PVRAAKFIARKNWIVT-GSDD-----MQI 79 (794)
T ss_pred eeeeecCCCCceEEEeeecCeeEEEec-ccce---eee---eeeeccc---chhhheeeeccceEEE-ecCC-----ceE
Confidence 467888888776666688999999984 3441 111 1111111 1122233333443433 2333 469
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeE
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGI 210 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gi 210 (335)
.+|+..+++.+..... . ..+...+++.|.-=.+++.+..-.|-.+|-+++.... ..|.. .-....-+
T Consensus 80 rVfnynt~ekV~~FeA--H---~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~---qtfeG-----H~HyVMqv 146 (794)
T KOG0276|consen 80 RVFNYNTGEKVKTFEA--H---SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACE---QTFEG-----HEHYVMQV 146 (794)
T ss_pred EEEecccceeeEEeec--c---ccceeeeeecCCCCeEEecCCccEEEEeeccCceeee---eEEcC-----cceEEEEE
Confidence 9999998876533221 1 3566789999988777787777778788877765431 22322 12236789
Q ss_pred EEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 211 VYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 211 a~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
++.|.. +-|++.+-++.|.+......
T Consensus 147 ~fnPkD~ntFaS~sLDrTVKVWslgs~ 173 (794)
T KOG0276|consen 147 AFNPKDPNTFASASLDRTVKVWSLGSP 173 (794)
T ss_pred EecCCCccceeeeeccccEEEEEcCCC
Confidence 999965 89999888887777666554
No 320
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=84.39 E-value=35 Score=31.80 Aligned_cols=148 Identities=20% Similarity=0.177 Sum_probs=78.9
Q ss_pred CcceeeeEEcCCCCEEEEE-ec-C---CeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEe-CCCCeEEEEEec
Q 039428 48 SFLCETAKWDDVGRRFLVS-FL-D---GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVD-RPRNRLLVAFTD 121 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~-~~-~---~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d-~~~g~l~v~~~D 121 (335)
..+-..+.|.++++.+++. .. . -.+..+|...+.. +.......+... .....+.+- ++++.++.. .+
T Consensus 183 ~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~-----~~~~~e~~~~Wv-~~~~~~~~~~~~~~~~l~~-s~ 255 (353)
T PF00930_consen 183 DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET-----RVVLEETSDGWV-DVYDPPHFLGPDGNEFLWI-SE 255 (353)
T ss_dssp SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC-----EEEEEEESSSSS-SSSSEEEE-TTTSSEEEEE-EE
T ss_pred ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce-----eEEEEecCCcce-eeecccccccCCCCEEEEE-EE
Confidence 4455788999998844444 32 2 2577888654442 110001112211 122344443 334443333 33
Q ss_pred CCCCccceEEEEECCCCeEEEEeecCCCccCCCCC-CceeECCCC-cEEEEeCC----CCeEEEEccC-CcEEEEecCCc
Q 039428 122 VLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTA-DDIAVDAEG-NAYVTDVV----SSKIWKVGVE-GQLLSIIRSPL 194 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p-~~~~vd~~G-~lyV~d~~----~~~I~~~d~~-g~~~~~~~~~~ 194 (335)
..+. ..|+.++.+++........ .... .-+.+|+++ .+|++... ...||+++.+ ++..+.+
T Consensus 256 ~~G~--~hly~~~~~~~~~~~lT~G------~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~L---- 323 (353)
T PF00930_consen 256 RDGY--RHLYLYDLDGGKPRQLTSG------DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCL---- 323 (353)
T ss_dssp TTSS--EEEEEEETTSSEEEESS-S------SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEES----
T ss_pred cCCC--cEEEEEcccccceeccccC------ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEec----
Confidence 3233 4699999998875422111 1222 236778875 68887554 5689999999 7666533
Q ss_pred cccccccccccccC-eEEEccCCeEEEE
Q 039428 195 FTAKEWYKNVFGLN-GIVYHPDGFLIVI 221 (335)
Q Consensus 195 ~~~~~~~~~~~~p~-Gia~~~dg~Lyva 221 (335)
+. ..+.+ .+.++|+|..|+-
T Consensus 324 -T~------~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 324 -TC------EDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp -ST------TSSTTEEEEE-TTSSEEEE
T ss_pred -cC------CCCCceEEEECCCCCEEEE
Confidence 21 12244 8999999955543
No 321
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=84.27 E-value=47 Score=33.15 Aligned_cols=112 Identities=15% Similarity=0.189 Sum_probs=66.5
Q ss_pred CCCCCceeECCCCcEEEE---eCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEE
Q 039428 153 KSTADDIAVDAEGNAYVT---DVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNL 228 (335)
Q Consensus 153 ~~~p~~~~vd~~G~lyV~---d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v 228 (335)
+...+.+.-..+|..+.+ ++.+.+|+..+..-...+ .-|.. ....+.-+.|.|.- +|+|+...+ |
T Consensus 521 ~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ----~PF~k-----skG~vq~v~FHPs~p~lfVaTq~~--v 589 (733)
T KOG0650|consen 521 PKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ----SPFRK-----SKGLVQRVKFHPSKPYLFVATQRS--V 589 (733)
T ss_pred CCccceeeeecCCceEEEeccCCCcceEEEEeccccccc----Cchhh-----cCCceeEEEecCCCceEEEEeccc--e
Confidence 345567888888875554 344566666665432222 12321 12347888999987 999996554 5
Q ss_pred EEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEEcC
Q 039428 229 FKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVESS 281 (335)
Q Consensus 229 ~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~~~ 281 (335)
..+|+.... .+..+ +.| ....+.|++++.| +|++.++ .+.+.+++.+
T Consensus 590 RiYdL~kqe-lvKkL-~tg---~kwiS~msihp~GDnli~gs~-d~k~~WfDld 637 (733)
T KOG0650|consen 590 RIYDLSKQE-LVKKL-LTG---SKWISSMSIHPNGDNLILGSY-DKKMCWFDLD 637 (733)
T ss_pred EEEehhHHH-HHHHH-hcC---CeeeeeeeecCCCCeEEEecC-CCeeEEEEcc
Confidence 566766541 11111 123 1336789999988 5666655 3667777765
No 322
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=83.93 E-value=14 Score=34.33 Aligned_cols=142 Identities=18% Similarity=0.161 Sum_probs=82.3
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEE-eecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEe
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFL-TQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSII 190 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~ 190 (335)
..++.|. ... + +.|.+||.++|+.+.. +.- -...-++.|. + ++.|+.+....|.++|.+......+
T Consensus 246 d~rviis--GSS-D--sTvrvWDv~tge~l~tlihH------ceaVLhlrf~-n-g~mvtcSkDrsiaVWdm~sps~it~ 312 (499)
T KOG0281|consen 246 DERVIVS--GSS-D--STVRVWDVNTGEPLNTLIHH------CEAVLHLRFS-N-GYMVTCSKDRSIAVWDMASPTDITL 312 (499)
T ss_pred cceEEEe--cCC-C--ceEEEEeccCCchhhHHhhh------cceeEEEEEe-C-CEEEEecCCceeEEEeccCchHHHH
Confidence 4567773 221 2 5699999999976521 111 0122245553 3 3777878888888888764321111
Q ss_pred cCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc-CCCcEEEEe
Q 039428 191 RSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL-SPTKLVVAG 269 (335)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d-~~g~l~va~ 269 (335)
.. .+. +.....|-+-++ ..++|+.++...|...+..+.. .++.+. | . -.|+|-- =.|++.|++
T Consensus 313 rr-VLv-----GHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~e-fvRtl~--g-H----kRGIAClQYr~rlvVSG 376 (499)
T KOG0281|consen 313 RR-VLV-----GHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCE-FVRTLN--G-H----KRGIACLQYRDRLVVSG 376 (499)
T ss_pred HH-HHh-----hhhhheeeeccc--cceEEEecCCceEEEEecccee-eehhhh--c-c----cccceehhccCeEEEec
Confidence 00 000 122336666666 3477888888888888888753 444333 3 2 3577754 247899987
Q ss_pred cCCCeEEEEEcCC
Q 039428 270 NPYPSARLVESSD 282 (335)
Q Consensus 270 ~~~~~~~v~~~~~ 282 (335)
...+.+++.+..-
T Consensus 377 SSDntIRlwdi~~ 389 (499)
T KOG0281|consen 377 SSDNTIRLWDIEC 389 (499)
T ss_pred CCCceEEEEeccc
Confidence 7667777776543
No 323
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=83.06 E-value=15 Score=37.82 Aligned_cols=116 Identities=10% Similarity=0.086 Sum_probs=74.6
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEE-ecCCCCccce
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAF-TDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~-~D~~~~~~~~ 129 (335)
-.+++|..+|..++.+.+.+-+.+|...+++ ++++ |.+. ....++.+++ ++.+|... +| ++
T Consensus 254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~--------kqfL--PRLg-s~I~~i~vS~-ds~~~sl~~~D------Nq 315 (792)
T KOG1963|consen 254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGK--------KQFL--PRLG-SPILHIVVSP-DSDLYSLVLED------NQ 315 (792)
T ss_pred cceeEEecCCceEeecccceEEEEEeecCCC--------cccc--cccC-CeeEEEEEcC-CCCeEEEEecC------ce
Confidence 3588999999888888888889999754443 1354 4432 3457999997 67777654 33 35
Q ss_pred EEEEECCCCeEEEEee-cCCC-----ccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC
Q 039428 130 LAAYDLSTWKRLFLTQ-LSGK-----SEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG 184 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~-~~~~-----~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g 184 (335)
|..+...+.+....+. +..+ ......+.++.+||.=+.-+-....+.|+-+|+-.
T Consensus 316 I~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~t 376 (792)
T KOG1963|consen 316 IHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYT 376 (792)
T ss_pred EEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccc
Confidence 7777665544432222 1111 11246778899999644555567788999998754
No 324
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=82.88 E-value=12 Score=35.29 Aligned_cols=112 Identities=18% Similarity=0.205 Sum_probs=67.7
Q ss_pred CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECC--------C-----Ce--EEEEeecCCCccCCCCCCceeECCCC
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLS--------T-----WK--RLFLTQLSGKSEEKSTADDIAVDAEG 165 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~--------~-----~~--~~~~~~~~~~~~~~~~p~~~~vd~~G 165 (335)
...+.+.+++ +|.+.+...|. +.|+.|-.. + .+ ++... +.+. ..-+.+++-.+++
T Consensus 66 ~aVN~vRf~p-~gelLASg~D~-----g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~-lr~h---~~diydL~Ws~d~ 135 (434)
T KOG1009|consen 66 RAVNVVRFSP-DGELLASGGDG-----GEVFLWKQGDVRIFDADTEADLNKEKWVVKKV-LRGH---RDDIYDLAWSPDS 135 (434)
T ss_pred ceeEEEEEcC-CcCeeeecCCC-----ceEEEEEecCcCCccccchhhhCccceEEEEE-eccc---ccchhhhhccCCC
Confidence 4578999997 88898865443 235555433 3 11 11111 1111 3457789999999
Q ss_pred cEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEe
Q 039428 166 NAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKID 232 (335)
Q Consensus 166 ~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d 232 (335)
+..++.+..+.++.+|.. |.....+.+ ....++|+|+||-+.-+.+.+...+.+.+.
T Consensus 136 ~~l~s~s~dns~~l~Dv~~G~l~~~~~d----------h~~yvqgvawDpl~qyv~s~s~dr~~~~~~ 193 (434)
T KOG1009|consen 136 NFLVSGSVDNSVRLWDVHAGQLLAILDD----------HEHYVQGVAWDPLNQYVASKSSDRHPEGFS 193 (434)
T ss_pred ceeeeeeccceEEEEEeccceeEeeccc----------cccccceeecchhhhhhhhhccCcccceee
Confidence 999999998999999876 444443221 123488999998764444433333333333
No 325
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=82.64 E-value=6.9 Score=37.51 Aligned_cols=194 Identities=12% Similarity=0.080 Sum_probs=115.9
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.+.|..+.+..+|+.++.....|-|.-+|-.+++ +..|+.+ - .....+.+-. +..+|++ +..
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~----L~~Ei~v---~----Etv~Dv~~LH-neq~~AV-AQK----- 190 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK----LHFEINV---M----ETVRDVTFLH-NEQFFAV-AQK----- 190 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccce----eeeeeeh---h----hhhhhhhhhc-chHHHHh-hhh-----
Confidence 4568889999999999998778889988854443 1111111 1 1334455442 4445543 221
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
.-+++||-.+-++..... ....+-+.|-|-..+.++-+.+|-+.-.|-. |+.+..+ .+. ...
T Consensus 191 ~y~yvYD~~GtElHClk~-------~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~----~t~------~G~ 253 (545)
T KOG1272|consen 191 KYVYVYDNNGTELHCLKR-------HIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI----RTG------AGR 253 (545)
T ss_pred ceEEEecCCCcEEeehhh-------cCchhhhcccchhheeeecccCCceEEEeechhhhhHHH----Hcc------CCc
Confidence 358889877666653321 3344557777888888888888877777754 4433211 111 011
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
..-++-.|-+.+.-.-..+|.|.-..++.....+..+.-.+ ...++|+|++|++.++......+.|.+..
T Consensus 254 ~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g-----~V~siAv~~~G~YMaTtG~Dr~~kIWDlR 323 (545)
T KOG1272|consen 254 TDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG-----PVSSIAVDRGGRYMATTGLDRKVKIWDLR 323 (545)
T ss_pred cchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCC-----CcceEEECCCCcEEeecccccceeEeeec
Confidence 34455555555554555678888777776531223333222 35799999999988886555667777654
No 326
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=82.37 E-value=68 Score=33.58 Aligned_cols=158 Identities=13% Similarity=0.149 Sum_probs=83.7
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCcee---ECCCCcEEEEeCCCCeEEE
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIA---VDAEGNAYVTDVVSSKIWK 179 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~---vd~~G~lyV~d~~~~~I~~ 179 (335)
|.-+-++..+..++. .|.... +.|+++|++.|+++.........+-..+.++=. .++. ..|+. -..+++++
T Consensus 483 P~k~mL~~~d~~mil--~~~~~~--~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e-~tflG-ls~n~lfr 556 (794)
T PF08553_consen 483 PKKAMLHDQDRNMIL--LDPNNP--NKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNE-QTFLG-LSDNSLFR 556 (794)
T ss_pred cchhhhhccccceEe--ecCCCC--CceEEEecCCCcEEEEeecCCCcceeEecccccccccCCC-ceEEE-ECCCceEE
Confidence 444444433444544 233221 569999999999874444321110001111111 1122 36665 44578999
Q ss_pred EccC--CcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeE
Q 039428 180 VGVE--GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGL 257 (335)
Q Consensus 180 ~d~~--g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGi 257 (335)
+||. |..+..-....|. ....-..+|-+.+|++-|+. ..|.|.-||.-+.. ....++.-|+. .-||
T Consensus 557 iDpR~~~~k~v~~~~k~Y~------~~~~Fs~~aTt~~G~iavgs-~~G~IRLyd~~g~~-AKT~lp~lG~p----I~~i 624 (794)
T PF08553_consen 557 IDPRLSGNKLVDSQSKQYS------SKNNFSCFATTEDGYIAVGS-NKGDIRLYDRLGKR-AKTALPGLGDP----IIGI 624 (794)
T ss_pred eccCCCCCceeeccccccc------cCCCceEEEecCCceEEEEe-CCCcEEeecccchh-hhhcCCCCCCC----eeEE
Confidence 9986 3222110111222 22345678888899998886 56778888755431 22334322311 4789
Q ss_pred EEcCCCcEEEEecCCCeEEEEE
Q 039428 258 ALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 258 a~d~~g~l~va~~~~~~~~v~~ 279 (335)
.+..||++.+|--. .-+.+++
T Consensus 625 Dvt~DGkwilaTc~-tyLlLi~ 645 (794)
T PF08553_consen 625 DVTADGKWILATCK-TYLLLID 645 (794)
T ss_pred EecCCCcEEEEeec-ceEEEEE
Confidence 99999997777321 3355544
No 327
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=82.21 E-value=69 Score=33.52 Aligned_cols=163 Identities=16% Similarity=0.050 Sum_probs=84.2
Q ss_pred CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC------CCcceEEEeC----------------CCCeEEE
Q 039428 60 GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG------NATMGIAVDR----------------PRNRLLV 117 (335)
Q Consensus 60 g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~------~~p~Gi~~d~----------------~~g~l~v 117 (335)
++.+|++..++.|+.+|..+|+. .|.-.+.... ..+.|+++.. .+++||+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~--------lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~ 265 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKE--------KWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIIL 265 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcE--------EEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEE
Confidence 45666666678999999776761 1322222110 1234555431 2458888
Q ss_pred EEecCCCCccceEEEEECCCCeEEEEeecCCC----------ccCCCCCC-ceeECCCCcEEEEeC---------CCCeE
Q 039428 118 AFTDVLGNKYSALAAYDLSTWKRLFLTQLSGK----------SEEKSTAD-DIAVDAEGNAYVTDV---------VSSKI 177 (335)
Q Consensus 118 ~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~----------~~~~~~p~-~~~vd~~G~lyV~d~---------~~~~I 177 (335)
.+.| .+|+.+|.++|+..+.....+. ..+..... .-.+ -+|.+||..+ ..+.|
T Consensus 266 ~T~D------g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-~~g~VIvG~~v~d~~~~~~~~G~I 338 (764)
T TIGR03074 266 PTSD------ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-AGTTVVIGGRVADNYSTDEPSGVI 338 (764)
T ss_pred ecCC------CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEE-ECCEEEEEecccccccccCCCcEE
Confidence 6444 3599999999988754321110 00000011 1122 1467887632 25789
Q ss_pred EEEccC-CcEEEEecC--Ccccc---cccccccccc---CeEEEccCC-eEEEEE-----------------CCCCEEEE
Q 039428 178 WKVGVE-GQLLSIIRS--PLFTA---KEWYKNVFGL---NGIVYHPDG-FLIVIH-----------------MCSGNLFK 230 (335)
Q Consensus 178 ~~~d~~-g~~~~~~~~--~~~~~---~~~~~~~~~p---~Gia~~~dg-~Lyvad-----------------~~~~~v~~ 230 (335)
+-+|.+ |+....+.. +.... ++......++ ..+++|++. .+|+.- .-++.|..
T Consensus 339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA 418 (764)
T TIGR03074 339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA 418 (764)
T ss_pred EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence 999986 555443321 11110 0100011123 456888765 666622 12467899
Q ss_pred EeCCCCc
Q 039428 231 IDIRKEE 237 (335)
Q Consensus 231 ~d~~~~~ 237 (335)
+|+++++
T Consensus 419 LD~~TGk 425 (764)
T TIGR03074 419 LDATTGK 425 (764)
T ss_pred EeCCCCc
Confidence 9998874
No 328
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=80.70 E-value=6.4 Score=38.38 Aligned_cols=72 Identities=17% Similarity=0.179 Sum_probs=49.5
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCC
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSD 282 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~ 282 (335)
.+|+++|+|||....+-+.++-+..|+-+..+ + +.+-- ..+++---+.+.|||+++|++....=+.|....+
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e--L--lg~mk-SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e 363 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQE--L--LGVMK-SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE 363 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHH--H--HHHHH-hhccceEEEEEcCCccEEEecCCcceEEEEEecc
Confidence 69999999999777777788888888887751 1 11111 1245566788899999998876545455555443
No 329
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=80.56 E-value=48 Score=30.65 Aligned_cols=67 Identities=13% Similarity=0.215 Sum_probs=34.8
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCe--EEEEeecCCCccCCCCCCceeECCCCcEEEEeCC-----------CCeEE
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWK--RLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVV-----------SSKIW 178 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~-----------~~~I~ 178 (335)
++.|||+.. ... ..++++|++... -....+++ ..+.... .++ --++.|||.... ...++
T Consensus 17 ~~~vyv~GG-~~~---~~~~~~d~~~~~~~W~~l~~~p--~~~R~~~-~~~-~~~~~iYv~GG~~~~~~~~~~~~~~~v~ 88 (346)
T TIGR03547 17 GDKVYVGLG-SAG---TSWYKLDLKKPSKGWQKIADFP--GGPRNQA-VAA-AIDGKLYVFGGIGKANSEGSPQVFDDVY 88 (346)
T ss_pred CCEEEEEcc-ccC---CeeEEEECCCCCCCceECCCCC--CCCcccc-eEE-EECCEEEEEeCCCCCCCCCcceecccEE
Confidence 689999632 211 358899974322 22112221 1101122 222 235789997643 14688
Q ss_pred EEccCCcE
Q 039428 179 KVGVEGQL 186 (335)
Q Consensus 179 ~~d~~g~~ 186 (335)
++|+....
T Consensus 89 ~Yd~~~~~ 96 (346)
T TIGR03547 89 RYDPKKNS 96 (346)
T ss_pred EEECCCCE
Confidence 89987654
No 330
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=80.31 E-value=23 Score=36.10 Aligned_cols=114 Identities=13% Similarity=0.160 Sum_probs=68.8
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEcc
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGV 182 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~ 182 (335)
...|++||..+.+..+..|. .|.+||.++++........ ....+-+--+..||.|...++......+-.+|-
T Consensus 599 lYDm~Vdp~~k~v~t~cQDr------nirif~i~sgKq~k~FKgs--~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 599 LYDMAVDPTSKLVVTVCQDR------NIRIFDIESGKQVKSFKGS--RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDF 670 (1080)
T ss_pred EEEeeeCCCcceEEEEeccc------ceEEEeccccceeeeeccc--ccCCCceEEEEECCCccEEEEeecCCceEEEEe
Confidence 57888888555555443332 4999999988766332221 111355667889999944444445566777775
Q ss_pred CCcE-E-EEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCC
Q 039428 183 EGQL-L-SIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 183 ~g~~-~-~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~ 235 (335)
-... . +.++. .....|+.|.+|=.=+++-++++.|++..+-.
T Consensus 671 ~sgEcvA~m~GH-----------sE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 671 VSGECVAQMTGH-----------SEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccchhhhhhcCc-----------chheeeeeecccchhheeecCCceEEEEECch
Confidence 4322 1 21221 12378999998875455666788777665543
No 331
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=79.64 E-value=49 Score=30.20 Aligned_cols=189 Identities=13% Similarity=0.104 Sum_probs=96.3
Q ss_pred eeeEEcCCCC--EEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 52 ETAKWDDVGR--RFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 52 egia~d~~g~--~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
..+.|-+..+ .++++.++.+|-.||.. ...| +. .+..|+ +...+.+ ....+.|+.++. .
T Consensus 117 kt~~wv~~~~~~cl~TGSWDKTlKfWD~R-~~~p---v~---t~~LPe----RvYa~Dv--~~pm~vVata~r------~ 177 (347)
T KOG0647|consen 117 KTCHWVPGMNYQCLVTGSWDKTLKFWDTR-SSNP---VA---TLQLPE----RVYAADV--LYPMAVVATAER------H 177 (347)
T ss_pred eEEEEecCCCcceeEecccccceeecccC-CCCe---ee---eeeccc----eeeehhc--cCceeEEEecCC------c
Confidence 4555655544 55666889999999853 3211 21 233454 3333333 245555654442 4
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEE--EecCCccccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLS--IIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~--~~~~~~~~~~~~~~~~~~ 206 (335)
|.+|+++.+..++.. ...+- ...-.-+++-+|...|.-.+-.|++.....+- .... .++-..-..+ .......
T Consensus 178 i~vynL~n~~te~k~-~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~-~~~~VYa 253 (347)
T KOG0647|consen 178 IAVYNLENPPTEFKR-IESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNS-VNDDVYA 253 (347)
T ss_pred EEEEEcCCCcchhhh-hcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCC-CCCceEE
Confidence 889998766544221 11111 23334566655554455455566665544332 1110 0110000000 1112445
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
.|+|+|.|-...+++-..+|+..-.|.+... .+...+..+ .. ..-..+..+|.+|+-
T Consensus 254 VNsi~FhP~hgtlvTaGsDGtf~FWDkdar~-kLk~s~~~~---qp-Itcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 254 VNSIAFHPVHGTLVTAGSDGTFSFWDKDART-KLKTSETHP---QP-ITCCSFNRNGSIFAY 310 (347)
T ss_pred ecceEeecccceEEEecCCceEEEecchhhh-hhhccCcCC---Cc-cceeEecCCCCEEEE
Confidence 8999999976677787788887777776642 111111111 11 235667778876654
No 332
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=77.82 E-value=50 Score=29.29 Aligned_cols=204 Identities=11% Similarity=0.085 Sum_probs=101.1
Q ss_pred ceeeeEEcCCCCEEEEEe---cCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCc
Q 039428 50 LCETAKWDDVGRRFLVSF---LDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~---~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
.+..+|++++|+.+.+.. ...+|+... .++.. . .+... .....-.+|+ ++.+|++. + ....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~-~~~~~-----~--~~~~g-----~~l~~PS~d~-~g~~W~v~-~-~~~~ 88 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP-AGGPV-----R--PVLTG-----GSLTRPSWDP-DGWVWTVD-D-GSGG 88 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc-CCCcc-----e--eeccC-----CccccccccC-CCCEEEEE-c-CCCc
Confidence 578999999998665543 346788885 34431 1 12211 2334557887 69999963 2 2221
Q ss_pred cceEEEEECCCCeEE-EEeecCCCccCCCCCCceeECCCCc--EEEE-eCCCCeEEEE----ccCCcEEEEecCCccccc
Q 039428 127 YSALAAYDLSTWKRL-FLTQLSGKSEEKSTADDIAVDAEGN--AYVT-DVVSSKIWKV----GVEGQLLSIIRSPLFTAK 198 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~p~~~~vd~~G~--lyV~-d~~~~~I~~~----d~~g~~~~~~~~~~~~~~ 198 (335)
..+.+ +..+++.. ...+.... ......+.++|||. ++|. +...++|++- +.+| ....+..+.-..
T Consensus 89 -~~~~~-~~~~g~~~~~~v~~~~~---~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g-~~~~l~~~~~~~- 161 (253)
T PF10647_consen 89 -VRVVR-DSASGTGEPVEVDWPGL---RGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG-VPRRLTGPRRVA- 161 (253)
T ss_pred -eEEEE-ecCCCcceeEEeccccc---CCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC-CcceeccceEec-
Confidence 12332 33333222 22333111 11567899999994 4444 3445677653 2234 111111111000
Q ss_pred cccccccccCeEEEccCCeEEEEECCC-CEEEE-EeCCCCceeEEEEeccCCcCCCCCCeEEEcCC-CcEEEEecCCCeE
Q 039428 199 EWYKNVFGLNGIVYHPDGFLIVIHMCS-GNLFK-IDIRKEEEEVKLIELRGGSSLSLGDGLALLSP-TKLVVAGNPYPSA 275 (335)
Q Consensus 199 ~~~~~~~~p~Gia~~~dg~Lyvad~~~-~~v~~-~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~-g~l~va~~~~~~~ 275 (335)
.........+++.+++.|.|..... ..+.. +..++. ....+. .. ...+.-++...+ +.+|+++. +.+
T Consensus 162 --~~~~~~v~~v~W~~~~~L~V~~~~~~~~~~~~v~~dG~--~~~~l~-~~---~~~~~v~a~~~~~~~~~~t~~--~~~ 231 (253)
T PF10647_consen 162 --PPLLSDVTDVAWSDDSTLVVLGRSAGGPVVRLVSVDGG--PSTPLP-SV---NLGVPVVAVAASPSTVYVTDD--GGV 231 (253)
T ss_pred --ccccCcceeeeecCCCEEEEEeCCCCCceeEEEEccCC--cccccC-CC---CCCcceEEeeCCCcEEEEECC--CcE
Confidence 1123347899999999777665543 44555 666654 222221 11 112333444433 45777765 444
Q ss_pred EEEEcCCCcEE
Q 039428 276 RLVESSDGWET 286 (335)
Q Consensus 276 ~v~~~~~~~~~ 286 (335)
+-......|+.
T Consensus 232 ~~~~~~~~W~~ 242 (253)
T PF10647_consen 232 LQSRSGASWRE 242 (253)
T ss_pred EECCCCCcceE
Confidence 32223333653
No 333
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=77.62 E-value=22 Score=35.72 Aligned_cols=69 Identities=17% Similarity=0.166 Sum_probs=46.1
Q ss_pred eeECCC-CcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 159 IAVDAE-GNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 159 ~~vd~~-G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
+.+.|- -++..+.+++-.|-.+|....... ..+.. ...+.-|||++|||++..+-+.+++|.++.+...
T Consensus 683 lRfHPLAadvLa~asyd~Ti~lWDl~~~~~~----~~l~g-----HtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 683 LRFHPLAADVLAVASYDSTIELWDLANAKLY----SRLVG-----HTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred EEecchhhhHhhhhhccceeeeeehhhhhhh----heecc-----CcCceeEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 555553 244445567778888886533221 01111 1224679999999999999999999999999886
No 334
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=77.23 E-value=11 Score=22.70 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=17.4
Q ss_pred eEEEccCCeEEEEECCCCEEEEEeCC
Q 039428 209 GIVYHPDGFLIVIHMCSGNLFKIDIR 234 (335)
Q Consensus 209 Gia~~~dg~Lyvad~~~~~v~~~d~~ 234 (335)
+++++ +|.||+... +++|+.+|++
T Consensus 16 ~~~v~-~g~vyv~~~-dg~l~ald~~ 39 (40)
T PF13570_consen 16 SPAVA-GGRVYVGTG-DGNLYALDAA 39 (40)
T ss_dssp --EEC-TSEEEEE-T-TSEEEEEETT
T ss_pred CCEEE-CCEEEEEcC-CCEEEEEeCC
Confidence 44666 789998875 8899999976
No 335
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=77.18 E-value=53 Score=29.49 Aligned_cols=68 Identities=13% Similarity=0.234 Sum_probs=47.7
Q ss_pred CCCCceeECCCCcEEEEeCCCCeEEEEccCC-cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEE
Q 039428 154 STADDIAVDAEGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKI 231 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~ 231 (335)
...+++.+-+|+.++.+-.-.+||.+++-.. +.+.++ .|.. .+.|.+||+||-.|..+.+.+.+|.-.
T Consensus 252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVL---kyHs-------agvn~vAfspd~~lmAaaskD~rISLW 320 (323)
T KOG0322|consen 252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVL---KYHS-------AGVNAVAFSPDCELMAAASKDARISLW 320 (323)
T ss_pred CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhh---hhhh-------cceeEEEeCCCCchhhhccCCceEEee
Confidence 3457899999999999877778888887553 332222 2322 358999999997777777777766543
No 336
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=77.03 E-value=4.1 Score=38.99 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=31.0
Q ss_pred CCCCCceeECCCCcEEEEeCCCCeEEEEccCCcE
Q 039428 153 KSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQL 186 (335)
Q Consensus 153 ~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~ 186 (335)
+..|.++.+|+||..|++|...+.+.++++.++.
T Consensus 466 fylphgl~~dkdgf~~~tdvash~v~k~k~~~~e 499 (501)
T KOG3567|consen 466 FYLPHGLSIDKDGFYWVTDVASHQVFKLKPNNKE 499 (501)
T ss_pred eecCCcceecCCCcEEeecccchhhhhccccccc
Confidence 7889999999999999999999999999887653
No 337
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=76.86 E-value=3.7 Score=27.33 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=23.7
Q ss_pred CCceeECCCCcEEEEeCC-------CCeEEEEccCCcE
Q 039428 156 ADDIAVDAEGNAYVTDVV-------SSKIWKVGVEGQL 186 (335)
Q Consensus 156 p~~~~vd~~G~lyV~d~~-------~~~I~~~d~~g~~ 186 (335)
.+++++.+||+++++... ...|.|++++|..
T Consensus 3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsL 40 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSL 40 (55)
T ss_pred eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCc
Confidence 357889999999998643 2358899999866
No 338
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=76.83 E-value=69 Score=30.39 Aligned_cols=202 Identities=12% Similarity=0.074 Sum_probs=100.6
Q ss_pred eeeEEcCCCCEEEEE-ecCC----eEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC-
Q 039428 52 ETAKWDDVGRRFLVS-FLDG----GVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN- 125 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~~~----~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~- 125 (335)
.+..++|+|+++..+ ..+| .|+++|..+++ .+.. .+... ...++...+++..+|.+..+....
T Consensus 127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~----~l~d--~i~~~-----~~~~~~W~~d~~~~~y~~~~~~~~~ 195 (414)
T PF02897_consen 127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGK----FLPD--GIENP-----KFSSVSWSDDGKGFFYTRFDEDQRT 195 (414)
T ss_dssp EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTE----EEEE--EEEEE-----ESEEEEECTTSSEEEEEECSTTTSS
T ss_pred eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCc----CcCC--ccccc-----ccceEEEeCCCCEEEEEEeCccccc
Confidence 467889999988887 4444 58999976554 1221 11111 122378876444554433333211
Q ss_pred ----ccceEEEEECCCCeEE--EEeecCCCccCCCCCCceeECCCCc-EEEEe--CCC-CeEEEEccCCc------EEEE
Q 039428 126 ----KYSALAAYDLSTWKRL--FLTQLSGKSEEKSTADDIAVDAEGN-AYVTD--VVS-SKIWKVGVEGQ------LLSI 189 (335)
Q Consensus 126 ----~~~~v~~~d~~~~~~~--~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d--~~~-~~I~~~d~~g~------~~~~ 189 (335)
....|+++...+.... ..... +.. ....-++..++||+ +++.- ... ..++.++.+.. ...+
T Consensus 196 ~~~~~~~~v~~~~~gt~~~~d~lvfe~--~~~-~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l 272 (414)
T PF02897_consen 196 SDSGYPRQVYRHKLGTPQSEDELVFEE--PDE-PFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLL 272 (414)
T ss_dssp -CCGCCEEEEEEETTS-GGG-EEEEC---TTC-TTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEE
T ss_pred ccCCCCcEEEEEECCCChHhCeeEEee--cCC-CcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEE
Confidence 0367999988665321 11221 111 11234688889987 44432 223 67999998753 2221
Q ss_pred ecCCccccccccccccccCeEEEccCCeEEE-EECC--CCEEEEEeCCCCce-eEE-EEeccCCcCCCCCCeEEEcCCCc
Q 039428 190 IRSPLFTAKEWYKNVFGLNGIVYHPDGFLIV-IHMC--SGNLFKIDIRKEEE-EVK-LIELRGGSSLSLGDGLALLSPTK 264 (335)
Q Consensus 190 ~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyv-ad~~--~~~v~~~d~~~~~~-~~~-~~~~~g~~~~~~pdGia~d~~g~ 264 (335)
... ..+....+-...+.+|+ ++.. +++|++++++.... ... .+.-.. . .....++.+.. +.
T Consensus 273 ~~~-----------~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~-~~~l~~~~~~~-~~ 338 (414)
T PF02897_consen 273 SPR-----------EDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-E-DVSLEDVSLFK-DY 338 (414)
T ss_dssp EES-----------SSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-S-SEEEEEEEEET-TE
T ss_pred eCC-----------CCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-C-ceeEEEEEEEC-CE
Confidence 110 01111222222446664 5533 57999999988631 122 222111 1 12346677654 45
Q ss_pred EEEE--ecCCCeEEEEEcC
Q 039428 265 LVVA--GNPYPSARLVESS 281 (335)
Q Consensus 265 l~va--~~~~~~~~v~~~~ 281 (335)
|++. .++...+++++..
T Consensus 339 Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 339 LVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEEETTEEEEEEEETT
T ss_pred EEEEEEECCccEEEEEECC
Confidence 6666 3334567777765
No 339
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=76.20 E-value=56 Score=28.99 Aligned_cols=96 Identities=14% Similarity=0.169 Sum_probs=56.6
Q ss_pred CCCCceeECCCCc-EEEEe--CCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEE
Q 039428 154 STADDIAVDAEGN-AYVTD--VVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFK 230 (335)
Q Consensus 154 ~~p~~~~vd~~G~-lyV~d--~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~ 230 (335)
..+...++.++|. +.+.. .....++....++.....+... ......++++|++|+.+........
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~------------~l~~PS~d~~g~~W~v~~~~~~~~~ 91 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGG------------SLTRPSWDPDGWVWTVDDGSGGVRV 91 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCC------------ccccccccCCCCEEEEEcCCCceEE
Confidence 3677899999986 33333 4567888888776655432111 2344588999999988876654444
Q ss_pred E--eCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc
Q 039428 231 I--DIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK 264 (335)
Q Consensus 231 ~--d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~ 264 (335)
+ +..+.. ....+...+.. .....+.+.+||.
T Consensus 92 ~~~~~~g~~-~~~~v~~~~~~--~~I~~l~vSpDG~ 124 (253)
T PF10647_consen 92 VRDSASGTG-EPVEVDWPGLR--GRITALRVSPDGT 124 (253)
T ss_pred EEecCCCcc-eeEEecccccC--CceEEEEECCCCc
Confidence 3 233321 33334433211 1346788889983
No 340
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=75.80 E-value=57 Score=28.89 Aligned_cols=143 Identities=19% Similarity=0.156 Sum_probs=74.1
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCcc--------CCCCCCceeECCCCc--EEEEeCCCCeE--EE
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSE--------EKSTADDIAVDAEGN--AYVTDVVSSKI--WK 179 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--------~~~~p~~~~vd~~G~--lyV~d~~~~~I--~~ 179 (335)
+|.+|---.++ ..|.+||++++.......++..+- +...=.|+++|..|- +|-+....+.| .+
T Consensus 77 nGs~yynk~~t-----~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~sk 151 (249)
T KOG3545|consen 77 NGSLYYNKAGT-----RNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSK 151 (249)
T ss_pred cceEEeeccCC-----cceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeec
Confidence 56666622222 459999999865543333322111 112227899999993 44455555544 47
Q ss_pred EccCCc-EEEEecCCccccccccccccccCeEEEccCCeEEEEECCC---CEE-EEEeCCCCceeEEEEeccCCcCCCCC
Q 039428 180 VGVEGQ-LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCS---GNL-FKIDIRKEEEEVKLIELRGGSSLSLG 254 (335)
Q Consensus 180 ~d~~g~-~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~---~~v-~~~d~~~~~~~~~~~~~~g~~~~~~p 254 (335)
+|+..- ....+... +.. ....+ +|---|.||+.++.+ .+| +.+|...++ -+.+.++=......-
T Consensus 152 Ldp~tl~~e~tW~T~-~~k------~~~~~--aF~iCGvLY~v~S~~~~~~~i~yaydt~~~~--~~~~~ipf~N~y~~~ 220 (249)
T KOG3545|consen 152 LDPETLEVERTWNTT-LPK------RSAGN--AFMICGVLYVVHSYNCTHTQISYAYDTTTGT--QERIDLPFPNPYSYA 220 (249)
T ss_pred cCHHHhheeeeeccc-cCC------CCcCc--eEEEeeeeEEEeccccCCceEEEEEEcCCCc--eecccccccchhhhh
Confidence 887432 22222111 111 11123 333358999888753 345 788888663 222222111113334
Q ss_pred CeEEEcC-CCcEEEEec
Q 039428 255 DGLALLS-PTKLVVAGN 270 (335)
Q Consensus 255 dGia~d~-~g~l~va~~ 270 (335)
..+...| |..||+=++
T Consensus 221 ~~idYNP~D~~LY~wdn 237 (249)
T KOG3545|consen 221 TMIDYNPRDRRLYAWDN 237 (249)
T ss_pred hccCCCcccceeeEecC
Confidence 5566666 456887776
No 341
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=75.25 E-value=77 Score=30.10 Aligned_cols=117 Identities=15% Similarity=0.239 Sum_probs=65.2
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEE-eecCCCccCCCCCCceeECCCCc-EEEEeCC--------
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFL-TQLSGKSEEKSTADDIAVDAEGN-AYVTDVV-------- 173 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~-~~~~~~~~~~~~p~~~~vd~~G~-lyV~d~~-------- 173 (335)
.++.++| +|+.++...|..|.....|+++|.++|+.+.. ... .....++..++|+ +|.+...
T Consensus 127 ~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~-------~~~~~~~W~~d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 127 GGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN-------PKFSSVSWSDDGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE-------EESEEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred eeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc-------cccceEEEeCCCCEEEEEEeCcccccccC
Confidence 3577887 55555544555544336799999999977622 111 1112288888875 4444321
Q ss_pred --CCeEEEEccCCcE---EEEecCCccccccccccccccCeEEEccCC-eEEEEECC--C-CEEEEEeCCCC
Q 039428 174 --SSKIWKVGVEGQL---LSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMC--S-GNLFKIDIRKE 236 (335)
Q Consensus 174 --~~~I~~~d~~g~~---~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~--~-~~v~~~d~~~~ 236 (335)
...|++...+... ..+++. +. ....-.++..++|+ +|++.... + ..++.++....
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~-----~~---~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEE-----PD---EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC------TT---CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CCCcEEEEEECCCChHhCeeEEee-----cC---CCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 4457887765432 222321 10 00113378889998 66654332 3 57999999874
No 342
>KOG4328 consensus WD40 protein [Function unknown]
Probab=74.39 E-value=64 Score=31.06 Aligned_cols=120 Identities=12% Similarity=0.083 Sum_probs=72.2
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCC--CCCCcceeeeeEEeecCCcCCCC--cceEEEeCCCCeEEEEEecCCCCc
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPD--EYSPGTVLEEVKLVKEDDVVGNA--TMGIAVDRPRNRLLVAFTDVLGNK 126 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~--g~~~~~v~~~~~~~~~~~~~~~~--p~Gi~~d~~~g~l~v~~~D~~~~~ 126 (335)
-.+..++|.|..++++..++.|.+||..- ... +-...+..+...+++ +.--+.+|+..-++| +...
T Consensus 372 V~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~-----~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~v--g~~~--- 441 (498)
T KOG4328|consen 372 VNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKD-----EPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVV--GRYP--- 441 (498)
T ss_pred eeeeEEcCCCCceEeeccCCceEEeecccccccC-----CccceeeccCcccccccchhheeCCCccEEEE--eccC---
Confidence 35778899988877778889999998410 111 101133344333322 455567884444445 3332
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEe-CCCCeEEEEccCC
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTD-VVSSKIWKVGVEG 184 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d-~~~~~I~~~d~~g 184 (335)
..|-+||.++++.+..... |.. ...|.=..+.|-+..+++. ...|.||+|..++
T Consensus 442 -r~IDv~~~~~~q~v~el~~--P~~-~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 442 -RPIDVFDGNGGQMVCELHD--PES-STIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred -cceeEEcCCCCEEeeeccC--ccc-cccccceeecccccceeccCCccceEEEEecCC
Confidence 3588999998886633222 111 3455557788888755554 4578999887765
No 343
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=73.46 E-value=34 Score=34.83 Aligned_cols=182 Identities=12% Similarity=0.134 Sum_probs=94.7
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-+++.++....++..+..+|.|-.||..+++ ++. .+ .+.. -.+..+.++| -+..++ .... + .-+
T Consensus 73 IeSl~f~~~E~LlaagsasgtiK~wDleeAk----~vr---tL--tgh~-~~~~sv~f~P-~~~~~a-~gSt--d--td~ 136 (825)
T KOG0267|consen 73 IESLTFDTSERLLAAGSASGTIKVWDLEEAK----IVR---TL--TGHL-LNITSVDFHP-YGEFFA-SGST--D--TDL 136 (825)
T ss_pred ceeeecCcchhhhcccccCCceeeeehhhhh----hhh---hh--hccc-cCcceeeecc-ceEEec-cccc--c--ccc
Confidence 4899999988777666778999999975443 111 11 1111 1234555665 344332 1111 1 125
Q ss_pred EEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEcc-CCcEEEEecCCccccccccccccccCe
Q 039428 131 AAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGV-EGQLLSIIRSPLFTAKEWYKNVFGLNG 209 (335)
Q Consensus 131 ~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~p~G 209 (335)
-.||.+-.-....... .....+-+.+.|+|++.+.....+.+..+|. .|+... .|..-+ ...+.
T Consensus 137 ~iwD~Rk~Gc~~~~~s-----~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~-----ef~~~e-----~~v~s 201 (825)
T KOG0267|consen 137 KIWDIRKKGCSHTYKS-----HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSK-----EFKSHE-----GKVQS 201 (825)
T ss_pred eehhhhccCceeeecC-----CcceeEEEeecCCCceeeccCCcceeeeeccccccccc-----cccccc-----ccccc
Confidence 5666552212211111 0223444778899966555444577888886 455553 233100 11333
Q ss_pred EEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 210 IVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
+-++|...|..+-...+.|.-+|+. ..+.+.-.+ .....+.+.+++++|....+
T Consensus 202 le~hp~e~Lla~Gs~d~tv~f~dle----tfe~I~s~~-~~~~~v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 202 LEFHPLEVLLAPGSSDRTVRFWDLE----TFEVISSGK-PETDGVRSLAFNPDGKIVLS 255 (825)
T ss_pred cccCchhhhhccCCCCceeeeeccc----eeEEeeccC-CccCCceeeeecCCceeeec
Confidence 4455555555444444555544554 234444222 22455778888888876666
No 344
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=73.42 E-value=97 Score=30.45 Aligned_cols=198 Identities=13% Similarity=0.131 Sum_probs=113.4
Q ss_pred CcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCcc
Q 039428 48 SFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.....++.|+++|+.+.+...+|.|..||..+.+. +. .+... .......++. +..++.+ + ...
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~----~~---~~~~~--h~~rvg~laW---~~~~lss-G-sr~--- 279 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK----TR---TLRGS--HASRVGSLAW---NSSVLSS-G-SRD--- 279 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhccc----cc---cccCC--cCceeEEEec---cCceEEE-e-cCC---
Confidence 45688999999999999998899999999543321 11 11110 0012233333 2444442 2 211
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
..|..+|....+.... ..... ....-+++..+||+...+....+.+..+|........ .+. ......
T Consensus 280 ~~I~~~dvR~~~~~~~-~~~~H---~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~----~~~-----~H~aAV 346 (484)
T KOG0305|consen 280 GKILNHDVRISQHVVS-TLQGH---RQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKF----TFT-----EHTAAV 346 (484)
T ss_pred CcEEEEEEecchhhhh-hhhcc---cceeeeeEECCCCCeeccCCCccceEeccCCCccccE----EEe-----ccceee
Confidence 3488888765543322 12111 3456789999999999888888899999884332111 011 022336
Q ss_pred CeEEEccCC-eEEEEECC-CCEEEEE-eCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEE-ecCCCeEEEEEcC
Q 039428 208 NGIVYHPDG-FLIVIHMC-SGNLFKI-DIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVA-GNPYPSARLVESS 281 (335)
Q Consensus 208 ~Gia~~~dg-~Lyvad~~-~~~v~~~-d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va-~~~~~~~~v~~~~ 281 (335)
-.++++|-. .|+.+-.+ ..+..+| +...++ ....+.... ..-.+.+.+.. .+..+ +...+.+.+.+.+
T Consensus 347 KA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~-~i~~vdtgs-----QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~p 419 (484)
T KOG0305|consen 347 KALAWCPWQSGLLATGGGSADRCIKFWNTNTGA-RIDSVDTGS-----QVCSLIWSKKYKELLSTHGYSENQITLWKYP 419 (484)
T ss_pred eEeeeCCCccCceEEcCCCcccEEEEEEcCCCc-EecccccCC-----ceeeEEEcCCCCEEEEecCCCCCcEEEEecc
Confidence 788999954 56555433 3344444 555553 444454322 24578888775 46666 4444667776654
No 345
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=73.14 E-value=68 Score=30.54 Aligned_cols=106 Identities=20% Similarity=0.251 Sum_probs=57.3
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeEC--CC-CcEEEEeCCCCeEEEEccCCc----EEEEecCCccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVD--AE-GNAYVTDVVSSKIWKVGVEGQ----LLSIIRSPLFTAKEW 200 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd--~~-G~lyV~d~~~~~I~~~d~~g~----~~~~~~~~~~~~~~~ 200 (335)
..+.+|..++++....+++... ...|--+.+- ++ ...|+-...+..|.++-.... ..+++..+...-..+
T Consensus 229 ~~lhvy~w~~~~~~QtidL~~~---gllpleiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~~tws~~~visvp~~kv~~w 305 (476)
T KOG0918|consen 229 SHLHVYQWSPGELKQTIDLGDT---GLLPLEIRFLHNPSKATGFVGCALSSNIFRFFKNSDDTWSAEVVISVPPLKVENW 305 (476)
T ss_pred eeeEEEecCCccceeEEecCCC---CcceEEeeeccCCCcccceeeeeccCCceeeeeccccccceeEEEecCccccccc
Confidence 3577777777777666666432 2233334442 22 235665555666666654322 111121111110000
Q ss_pred -ccccc-ccCeEEEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 201 -YKNVF-GLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 201 -~~~~~-~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
.+... -..-|-++-|. +|||+....|-|+++|+...
T Consensus 306 ~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP 344 (476)
T KOG0918|consen 306 ILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDP 344 (476)
T ss_pred cCcccchhhheeEEeecCcEEEEEeeeecceeeeccCCC
Confidence 01111 14566777766 99999999999999999886
No 346
>KOG3567 consensus Peptidylglycine alpha-amidating monooxygenase [Posttranslational modification, protein turnover, chaperones]
Probab=72.77 E-value=6.5 Score=37.69 Aligned_cols=34 Identities=24% Similarity=0.418 Sum_probs=29.7
Q ss_pred cccccCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 203 NVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
.+.-|.||.+|.||+.|++|-.++++.+.++.+.
T Consensus 465 ~fylphgl~~dkdgf~~~tdvash~v~k~k~~~~ 498 (501)
T KOG3567|consen 465 LFYLPHGLSIDKDGFYWVTDVASHQVFKLKPNNK 498 (501)
T ss_pred ceecCCcceecCCCcEEeecccchhhhhcccccc
Confidence 3455999999999999999999999999888764
No 347
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=72.35 E-value=25 Score=33.26 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=51.9
Q ss_pred CCCCceeECCCCc-EEEEeCCCCeEEEEccCCcE-------------------EEEecCCccc-ccc-----cccccccc
Q 039428 154 STADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQL-------------------LSIIRSPLFT-AKE-----WYKNVFGL 207 (335)
Q Consensus 154 ~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~-------------------~~~~~~~~~~-~~~-----~~~~~~~p 207 (335)
....|+-++=|.| +||+.+..|-|+++|-..-. ++++++.... +++ ...-..+|
T Consensus 312 ~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~kLtgQi~lGG~i~~~s~vkvl~~e~~~~~~ea~~vKGrkl~GGP 391 (476)
T KOG0918|consen 312 GLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNPKLTGQIFLGGSIQKGSPVKVLEEEGLKKQPEALYVKGRKLRGGP 391 (476)
T ss_pred hhhheeEEeecCcEEEEEeeeecceeeeccCCCCCcceEEEEEECcEeecCCceEEeccccccCCCccceecCccccCCc
Confidence 4557777776654 99999999999888854211 1111111011 111 11122469
Q ss_pred CeEEEccCC-eEEEEECC---------------CCEEEEEeCCCC
Q 039428 208 NGIVYHPDG-FLIVIHMC---------------SGNLFKIDIRKE 236 (335)
Q Consensus 208 ~Gia~~~dg-~Lyvad~~---------------~~~v~~~d~~~~ 236 (335)
.=|.++-|| +|||+++- .+++.++|.+..
T Consensus 392 QMlQLSLDGKRLYVt~SLys~WD~QFYPE~v~~G~~miqidvdt~ 436 (476)
T KOG0918|consen 392 QMLQLSLDGKRLYVTNSLYSAWDRQFYPELVSKGSHMIQIDVDTV 436 (476)
T ss_pred eeEEeccCCcEEEEEchhhhhhHhhhCHHHHhcCceEEEEeeecc
Confidence 999999999 99999863 466777777553
No 348
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=72.18 E-value=65 Score=31.94 Aligned_cols=72 Identities=14% Similarity=0.159 Sum_probs=53.9
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d 181 (335)
.+...+.++++..+.++..|. .|..||...+..... .. .-.|+.++..|+|.+++..+..|.|+.||
T Consensus 261 ~v~~ca~sp~E~kLvlGC~Dg------SiiLyD~~~~~t~~~-ka------~~~P~~iaWHp~gai~~V~s~qGelQ~FD 327 (545)
T PF11768_consen 261 QVICCARSPSEDKLVLGCEDG------SIILYDTTRGVTLLA-KA------EFIPTLIAWHPDGAIFVVGSEQGELQCFD 327 (545)
T ss_pred cceEEecCcccceEEEEecCC------eEEEEEcCCCeeeee-ee------cccceEEEEcCCCcEEEEEcCCceEEEEE
Confidence 456677787777787766664 599999877643322 21 35688999999999999989999999999
Q ss_pred cCCcE
Q 039428 182 VEGQL 186 (335)
Q Consensus 182 ~~g~~ 186 (335)
..-..
T Consensus 328 ~ALsp 332 (545)
T PF11768_consen 328 MALSP 332 (545)
T ss_pred eecCc
Confidence 86443
No 349
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.92 E-value=60 Score=32.04 Aligned_cols=121 Identities=12% Similarity=0.199 Sum_probs=69.4
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeEC---------CCCcEEEEeCCCCeEEEEccC--Cc-EEEEecCCcc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVD---------AEGNAYVTDVVSSKIWKVGVE--GQ-LLSIIRSPLF 195 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd---------~~G~lyV~d~~~~~I~~~d~~--g~-~~~~~~~~~~ 195 (335)
+.|+.+|.+.|+++-...+... .+-+.+. +.+. +|. -.+++|+|+||. |+ .+.+.....|
T Consensus 356 ~~l~klDIE~GKIVeEWk~~~d------i~mv~~t~d~K~~Ql~~e~T-lvG-Ls~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 356 DKLYKLDIERGKIVEEWKFEDD------INMVDITPDFKFAQLTSEQT-LVG-LSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred CcceeeecccceeeeEeeccCC------cceeeccCCcchhccccccc-EEe-ecCCceEEecccccCcceeeeeecccc
Confidence 5799999999988744433211 1112222 2332 221 236799999986 44 2222222233
Q ss_pred ccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE
Q 039428 196 TAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA 268 (335)
Q Consensus 196 ~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va 268 (335)
. +..+-+.++-+.+|++.|+. ..|.|.-+|.-+.. ....++.-|+ -.-++.+..+|..+++
T Consensus 428 ~------~k~nFsc~aTT~sG~IvvgS-~~GdIRLYdri~~~-AKTAlPgLG~----~I~hVdvtadGKwil~ 488 (644)
T KOG2395|consen 428 S------TKNNFSCFATTESGYIVVGS-LKGDIRLYDRIGRR-AKTALPGLGD----AIKHVDVTADGKWILA 488 (644)
T ss_pred c------cccccceeeecCCceEEEee-cCCcEEeehhhhhh-hhhcccccCC----ceeeEEeeccCcEEEE
Confidence 3 23456788888889887775 56677777764431 2233433332 2467888889987766
No 350
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=69.88 E-value=90 Score=28.61 Aligned_cols=184 Identities=14% Similarity=0.116 Sum_probs=92.5
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC-eEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW-KRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKV 180 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~ 180 (335)
-..|+.++ .+-.|| +|.. ..++.+|...- ..........+ ..-.+++++..+ +.||++..+| +..+
T Consensus 130 yaygv~vs--Gn~aYV--adld----dgfLivdvsdpssP~lagrya~~---~~d~~~v~ISGn-~AYvA~~d~G-L~iv 196 (370)
T COG5276 130 YAYGVYVS--GNYAYV--ADLD----DGFLIVDVSDPSSPQLAGRYALP---GGDTHDVAISGN-YAYVAWRDGG-LTIV 196 (370)
T ss_pred eEEEEEec--CCEEEE--eecc----CcEEEEECCCCCCceeeeeeccC---CCCceeEEEecC-eEEEEEeCCC-eEEE
Confidence 34677775 688999 4542 24888887542 22211222111 122357888532 5999976654 5555
Q ss_pred ccCCcE-EEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeE--
Q 039428 181 GVEGQL-LSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGL-- 257 (335)
Q Consensus 181 d~~g~~-~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGi-- 257 (335)
|-.... ..++++ +. ...+..++.++ +++.|+++...+ +..+|.++.+ ..+++..- .-..|.++
T Consensus 197 DVSnp~sPvli~~--~n------~g~g~~sv~vs-dnr~y~vvy~eg-vlivd~s~~s-sp~~~gsy---et~~p~~~s~ 262 (370)
T COG5276 197 DVSNPHSPVLIGS--YN------TGPGTYSVSVS-DNRAYLVVYDEG-VLIVDVSGPS-SPTVFGSY---ETSNPVSIST 262 (370)
T ss_pred EccCCCCCeEEEE--Ee------cCCceEEEEec-CCeeEEEEcccc-eEEEecCCCC-CceEeecc---ccCCcccccc
Confidence 533211 111211 11 11135566655 668888887666 6778888864 44555321 12446666
Q ss_pred EEcCCCcEEEEecCCCeEEEEEc-CCCcEEEEEeeeecCCCCCcceEEEEeCCeEEEEec
Q 039428 258 ALLSPTKLVVAGNPYPSARLVES-SDGWETASVVAKFNGPTHRVATAATVKDGRVYLSHL 316 (335)
Q Consensus 258 a~d~~g~l~va~~~~~~~~v~~~-~~~~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV~~~ 316 (335)
..-++...|++++. ..+..++. +... -.+...+..+. -...++..-++.+|++..
T Consensus 263 v~Vs~~~~Yvadga-~gl~~idisnp~s--pfl~ss~~t~g-~~a~gi~ay~~y~yiadk 318 (370)
T COG5276 263 VPVSGEYAYVADGA-KGLPIIDISNPPS--PFLSSSLDTAG-YQAAGIRAYGNYNYIADK 318 (370)
T ss_pred eecccceeeeeccc-cCceeEeccCCCC--CchhccccCCC-ccccceEEecCeeEeccC
Confidence 22245689999663 23334432 2221 11222222121 112345555777777543
No 351
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=68.95 E-value=1.4e+02 Score=30.44 Aligned_cols=107 Identities=17% Similarity=0.195 Sum_probs=65.2
Q ss_pred CCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeC
Q 039428 154 STADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~ 233 (335)
...+.++.-|++ .|||.+....|..+.. ++.++.+ .. ..--..|+++-+++... +-...+.|...+.
T Consensus 141 asVWAv~~l~e~-~~vTgsaDKtIklWk~-~~~l~tf-----~g-----HtD~VRgL~vl~~~~fl-ScsNDg~Ir~w~~ 207 (745)
T KOG0301|consen 141 ASVWAVASLPEN-TYVTGSADKTIKLWKG-GTLLKTF-----SG-----HTDCVRGLAVLDDSHFL-SCSNDGSIRLWDL 207 (745)
T ss_pred hheeeeeecCCC-cEEeccCcceeeeccC-Cchhhhh-----cc-----chhheeeeEEecCCCeE-eecCCceEEEEec
Confidence 445677777887 9999998888888865 4444422 21 11237899999775433 3446778888888
Q ss_pred CCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEE
Q 039428 234 RKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 234 ~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~ 279 (335)
+++ .+... .|-. +.-.-+....++.++|+......+++..
T Consensus 208 ~ge--~l~~~--~ght--n~vYsis~~~~~~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 208 DGE--VLLEM--HGHT--NFVYSISMALSDGLIVSTGEDRTLRIWK 247 (745)
T ss_pred cCc--eeeee--eccc--eEEEEEEecCCCCeEEEecCCceEEEee
Confidence 776 33333 2311 2345566555566777755445566554
No 352
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=68.91 E-value=54 Score=30.92 Aligned_cols=116 Identities=9% Similarity=0.158 Sum_probs=65.1
Q ss_pred CCCCceeECCCCc-EEEEeCCCCe-EEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEE
Q 039428 154 STADDIAVDAEGN-AYVTDVVSSK-IWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFK 230 (335)
Q Consensus 154 ~~p~~~~vd~~G~-lyV~d~~~~~-I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~ 230 (335)
..++.+.+.++|+ ++++++...+ ++-++..-+..+.+. .+. ....|+.|.+..+. ...|++. .|.++.
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~--~~~------v~~~~~ai~~~~~~~sv~v~dk-agD~~~ 133 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLD--VSC------VPKRPTAISFIREDTSVLVADK-AGDVYS 133 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeee--Eee------cccCcceeeeeeccceEEEEee-cCCcee
Confidence 4566777777886 6666655433 333332222112111 111 12358888888766 7888884 455677
Q ss_pred EeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 231 IDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 231 ~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
+|.-... .......-| + +.+-..+++.+|+...++......|||.+.+
T Consensus 134 ~di~s~~-~~~~~~~lG-h-vSml~dVavS~D~~~IitaDRDEkIRvs~yp 181 (390)
T KOG3914|consen 134 FDILSAD-SGRCEPILG-H-VSMLLDVAVSPDDQFIITADRDEKIRVSRYP 181 (390)
T ss_pred eeeeccc-ccCcchhhh-h-hhhhheeeecCCCCEEEEecCCceEEEEecC
Confidence 7665521 001111123 2 4556788998888766664445678888765
No 353
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=68.39 E-value=6.8 Score=21.02 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=14.1
Q ss_pred CCCCceeECCCCcEEEEe
Q 039428 154 STADDIAVDAEGNAYVTD 171 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d 171 (335)
+....+..|++|++||+.
T Consensus 5 n~I~~i~~D~~G~lWigT 22 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWIGT 22 (24)
T ss_dssp SCEEEEEE-TTSCEEEEE
T ss_pred CeEEEEEEcCCcCEEEEe
Confidence 456789999999999974
No 354
>KOG3545 consensus Olfactomedin and related extracellular matrix glycoproteins [Extracellular structures]
Probab=68.27 E-value=87 Score=27.78 Aligned_cols=116 Identities=20% Similarity=0.220 Sum_probs=60.6
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCC---CeE-EE
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVS---SKI-WK 179 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~---~~I-~~ 179 (335)
..+++|. .-|||..+-......-.|.++|+.+-+.+...+..-+. ...-+...+. |.+|+.++.+ ..| +.
T Consensus 125 iD~avDE--~GLWviYat~~~~g~iv~skLdp~tl~~e~tW~T~~~k--~~~~~aF~iC--GvLY~v~S~~~~~~~i~ya 198 (249)
T KOG3545|consen 125 IDLAVDE--NGLWVIYATPENAGTIVLSKLDPETLEVERTWNTTLPK--RSAGNAFMIC--GVLYVVHSYNCTHTQISYA 198 (249)
T ss_pred ccceecc--cceeEEecccccCCcEEeeccCHHHhheeeeeccccCC--CCcCceEEEe--eeeEEEeccccCCceEEEE
Confidence 6788883 55888754222221123478888665555333221111 2233333333 8899988752 344 57
Q ss_pred EccCCcEEEEecCCccccccccccccccCeEEEcc-CCeEEEEECCCCEEEEEeC
Q 039428 180 VGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHP-DGFLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 180 ~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~-dg~Lyvad~~~~~v~~~d~ 233 (335)
+|..+...+...-+ |.. .......|-..| |..||+=| ++.+..+++
T Consensus 199 ydt~~~~~~~~~ip-f~N-----~y~~~~~idYNP~D~~LY~wd--ng~~l~y~l 245 (249)
T KOG3545|consen 199 YDTTTGTQERIDLP-FPN-----PYSYATMIDYNPRDRRLYAWD--NGHQLTYNL 245 (249)
T ss_pred EEcCCCceeccccc-ccc-----hhhhhhccCCCcccceeeEec--CCcEEEEEe
Confidence 77764433322111 221 234577888888 55888775 344444443
No 355
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=68.16 E-value=1.1e+02 Score=28.85 Aligned_cols=95 Identities=17% Similarity=0.215 Sum_probs=46.7
Q ss_pred CCCcEEEEeC-CCCeEEEEccCC---cEEEEecCCccccccccccccccCeEEEccCCeEEEEECC-----------CCE
Q 039428 163 AEGNAYVTDV-VSSKIWKVGVEG---QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC-----------SGN 227 (335)
Q Consensus 163 ~~G~lyV~d~-~~~~I~~~d~~g---~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~-----------~~~ 227 (335)
-++++||... ....++++|.+. +.... +.+.. ....-.+++ .-++.|||.-.. .+.
T Consensus 37 ~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l---~~~p~-----~~r~~~~~v-~~~~~IYV~GG~~~~~~~~~~~~~~~ 107 (376)
T PRK14131 37 DNNTVYVGLGSAGTSWYKLDLNAPSKGWTKI---AAFPG-----GPREQAVAA-FIDGKLYVFGGIGKTNSEGSPQVFDD 107 (376)
T ss_pred ECCEEEEEeCCCCCeEEEEECCCCCCCeEEC---CcCCC-----CCcccceEE-EECCEEEEEcCCCCCCCCCceeEccc
Confidence 3678999643 345688888753 22211 11100 001112233 336789986432 246
Q ss_pred EEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc-CCCcEEEEec
Q 039428 228 LFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL-SPTKLVVAGN 270 (335)
Q Consensus 228 v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d-~~g~l~va~~ 270 (335)
++++|+... ....+.... . ...-...++. -+++||+.+.
T Consensus 108 v~~YD~~~n--~W~~~~~~~-p-~~~~~~~~~~~~~~~IYv~GG 147 (376)
T PRK14131 108 VYKYDPKTN--SWQKLDTRS-P-VGLAGHVAVSLHNGKAYITGG 147 (376)
T ss_pred EEEEeCCCC--EEEeCCCCC-C-CcccceEEEEeeCCEEEEECC
Confidence 899999876 444443111 0 1111112222 4689999944
No 356
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=66.93 E-value=13 Score=21.72 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=22.2
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEe
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKID 232 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d 232 (335)
..+.|+++|++..+++-..++.|..+|
T Consensus 13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cEEEEEEecccccceeeCCCCEEEEEC
Confidence 478999999998877877888887765
No 357
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=66.58 E-value=31 Score=36.67 Aligned_cols=166 Identities=13% Similarity=0.118 Sum_probs=95.5
Q ss_pred eeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcC-CCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 52 ETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVV-GNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~-~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.|+-+.+..+-+..+ ..+|.|+.||..+-+.| +. .+... -.-..-++.+....+|++...+. ++
T Consensus 120 ~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP--------~~-~~~~~~~~eI~~lsWNrkvqhILAS~s~s-----g~ 185 (1049)
T KOG0307|consen 120 LGLDFNPFQGNLLASGADDGEILIWDLNKPETP--------FT-PGSQAPPSEIKCLSWNRKVSHILASGSPS-----GR 185 (1049)
T ss_pred eeeeccccCCceeeccCCCCcEEEeccCCcCCC--------CC-CCCCCCcccceEeccchhhhHHhhccCCC-----CC
Confidence 467777776645555 77889999986433221 11 11110 01234555554445666632211 35
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC--cEEEEeC--CCCeEEEEccC--CcEEEEecCCcccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG--NAYVTDV--VSSKIWKVGVE--GQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G--~lyV~d~--~~~~I~~~d~~--g~~~~~~~~~~~~~~~~~~~ 203 (335)
..+||++..+.+ +.+.... +-...++++.+|++ .++++.. ....|..+|.. ...++.+ . ..
T Consensus 186 ~~iWDlr~~~pi--i~ls~~~-~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~-----~-----~H 252 (1049)
T KOG0307|consen 186 AVIWDLRKKKPI--IKLSDTP-GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKIL-----E-----GH 252 (1049)
T ss_pred ceeccccCCCcc--cccccCC-CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhh-----c-----cc
Confidence 889999877544 2222111 12457789999997 4666632 24566667643 1112211 1 12
Q ss_pred ccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEec
Q 039428 204 VFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIEL 245 (335)
Q Consensus 204 ~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~ 245 (335)
..+.-++.+.+.+ +|.++...+++|+..++++++ .+..+..
T Consensus 253 ~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE-vl~~~p~ 294 (1049)
T KOG0307|consen 253 QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE-VLGELPA 294 (1049)
T ss_pred ccceeeeccCCCCchhhhcccCCCCeeEecCCCce-EeeecCC
Confidence 3457888888876 888888889999999988863 4444444
No 358
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=66.54 E-value=1.5e+02 Score=29.75 Aligned_cols=190 Identities=13% Similarity=0.133 Sum_probs=107.5
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEE-EecCCCCccc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVA-FTDVLGNKYS 128 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~-~~D~~~~~~~ 128 (335)
.-.++++...++.++....+.++.+||..+|.. . ..+ .+ ..-.+-.++- .+.+.+. +.| .
T Consensus 251 ~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C-----~--~~l--~g---h~stv~~~~~-~~~~~~sgs~D------~ 311 (537)
T KOG0274|consen 251 GVWGLAFPSGGDKLVSGSTDKTERVWDCSTGEC-----T--HSL--QG---HTSSVRCLTI-DPFLLVSGSRD------N 311 (537)
T ss_pred CceeEEEecCCCEEEEEecCCcEEeEecCCCcE-----E--EEe--cC---CCceEEEEEc-cCceEeeccCC------c
Confidence 346788877566776667789999999665652 1 122 22 1223445553 3434442 122 4
Q ss_pred eEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCcccccccccccccc
Q 039428 129 ALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 129 ~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
.|.+|+.++++.+..... . ....+.+..+ +.+.|+.+..+.|.++++. ++.+..+.. .....
T Consensus 312 tVkVW~v~n~~~l~l~~~--h---~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g----------H~~~V 374 (537)
T KOG0274|consen 312 TVKVWDVTNGACLNLLRG--H---TGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG----------HTGRV 374 (537)
T ss_pred eEEEEeccCcceEEEecc--c---cccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC----------CcceE
Confidence 699999998876633221 1 2344567666 7788888888899999886 333332221 11125
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCCC-ceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRKE-EEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~~-~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
..+.+++...+| +-.-++.|...|+.+. + -...+. + . -....++.+ .++.++++...+.+++-+..++
T Consensus 375 ~sl~~~~~~~~~-Sgs~D~~IkvWdl~~~~~-c~~tl~--~-h-~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 375 YSLIVDSENRLL-SGSLDTTIKVWDLRTKRK-CIHTLQ--G-H-TSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred EEEEecCcceEE-eeeeccceEeecCCchhh-hhhhhc--C-C-ccccccccc--ccceeEeccccccEEEeecccC
Confidence 566777543444 4444577888888876 2 222222 1 1 112233333 3677777665566777665443
No 359
>PF13970 DUF4221: Domain of unknown function (DUF4221); PDB: 3S9J_A.
Probab=66.02 E-value=1.1e+02 Score=28.22 Aligned_cols=148 Identities=12% Similarity=0.062 Sum_probs=68.3
Q ss_pred ceEEEEECCCCeEEEEeecCCCcc-CCCCCCceeECCCCcEEEEe-CCCCeEEEEccCCcEEEEecC--Ccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSE-EKSTADDIAVDAEGNAYVTD-VVSSKIWKVGVEGQLLSIIRS--PLFTAKEWYKN 203 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~-~~~~p~~~~vd~~G~lyV~d-~~~~~I~~~d~~g~~~~~~~~--~~~~~~~~~~~ 203 (335)
+.|..+|++++++...+++...++ +...+.+.....|. +|+.. ....+|+++|.+|+....+.- ....... ...
T Consensus 67 ~~i~~~Dl~~~~l~~~i~~ekeGpngi~~~~~~~~~~Ds-i~l~~~~~~~~l~~~n~~G~~~~~~~~~~~~~~~~~-~~~ 144 (333)
T PF13970_consen 67 HSIDIYDLDSGKLVKKIPFEKEGPNGIGRPFGFFQNLDS-IFLFNSYAFPKLFLFNSQGEVLKKIDLEEEDLEFEP-SEF 144 (333)
T ss_dssp -EEEEEETTTTEEEEEEE-BSSSTTB-TT---EEESSST-TSEEEEGGGTEEEEE-TT--EEEEEE---TTS--------
T ss_pred ceEEEEECCCCceeeeeeeeeECCCCccccccceEcCCc-eEEEecCCcceEEEEcCCCeEEEEEecccCcccccc-ccc
Confidence 469999999999887777643321 13344445543443 33333 456789999999987765321 1111000 000
Q ss_pred ccccCeEEEccCCeEEEEEC-----------CCCEEEEEeCCCCceeEEEEec--cCCc--------CCCCCCeEEEc-C
Q 039428 204 VFGLNGIVYHPDGFLIVIHM-----------CSGNLFKIDIRKEEEEVKLIEL--RGGS--------SLSLGDGLALL-S 261 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~-----------~~~~v~~~d~~~~~~~~~~~~~--~g~~--------~~~~pdGia~d-~ 261 (335)
....+.++..+++.+|++.. ...-+..+|++.. .+..+++ .... ....+..--.- .
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (333)
T PF13970_consen 145 PSFSNSPIFIKDNKLYFSQPYHYPFNGDFIEKIPVLAIIDLNTK--KVKWLPLPYPDKYQKYNINWDGGMFPSYSYNYFK 222 (333)
T ss_dssp BTTTTB--EEETTEEEEE---SSS--GGGGGGSEEEEEEETTT----EEEEEEE--S------SSEEE---EEEEEET-T
T ss_pred ccccccceEeCCCeEEEeeecccccccccccCceEEEEEECCCC--eEEEEeCCChHHhhhhccccCcceecceeEEEee
Confidence 11125566667887787754 1124678898887 4554443 1100 00011111122 4
Q ss_pred CCcEEEEecCCCeEEEEE
Q 039428 262 PTKLVVAGNPYPSARLVE 279 (335)
Q Consensus 262 ~g~l~va~~~~~~~~v~~ 279 (335)
.++++++...++.+.|.+
T Consensus 223 ~~~~i~s~~~~~~iyv~d 240 (333)
T PF13970_consen 223 GGKIIISFPADSEIYVYD 240 (333)
T ss_dssp TTEEEEEETT-SEEEEES
T ss_pred CCEEEEecCCCceEEEEC
Confidence 467777766566777655
No 360
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=65.38 E-value=1.3e+02 Score=28.86 Aligned_cols=189 Identities=14% Similarity=0.162 Sum_probs=100.7
Q ss_pred eeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEE
Q 039428 53 TAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALA 131 (335)
Q Consensus 53 gia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~ 131 (335)
.++|...-+..+++ ..+.+|..||..+++. . ..+.. .+...+.+.+.+....+.+. ... + ..|.
T Consensus 248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p-----~--~s~~~---~~k~Vq~l~wh~~~p~~LLs--Gs~-D--~~V~ 312 (463)
T KOG0270|consen 248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKP-----K--SSITH---HGKKVQTLEWHPYEPSVLLS--GSY-D--GTVA 312 (463)
T ss_pred HHHhccccceeEEecCCCceEEEEEcCCCCc-----c--eehhh---cCCceeEEEecCCCceEEEe--ccc-c--ceEE
Confidence 45565554444455 7789999999766652 1 12221 22456788898766666663 222 1 3577
Q ss_pred EEECCC-C--eEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccC--CcEEEEecCCcccccccccccc
Q 039428 132 AYDLST-W--KRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVE--GQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 132 ~~d~~~-~--~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~--g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
.+|.+. . ...+.... ...-++.++.- +.+++.+..|.|+-+|.. |+.+..+.. .-.
T Consensus 313 l~D~R~~~~s~~~wk~~g--------~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~A----------Hd~ 374 (463)
T KOG0270|consen 313 LKDCRDPSNSGKEWKFDG--------EVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKA----------HDD 374 (463)
T ss_pred eeeccCccccCceEEecc--------ceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEe----------ccC
Confidence 788652 1 11222221 12236677654 466666778888888864 333332210 111
Q ss_pred ccCeEEEccCC-eEEEEECCCCE--EEEEeCCCCce-eEEEEeccCCcCCCCCCeEEEcCCCcEEEE-ecCCCeEEEEEc
Q 039428 206 GLNGIVYHPDG-FLIVIHMCSGN--LFKIDIRKEEE-EVKLIELRGGSSLSLGDGLALLSPTKLVVA-GNPYPSARLVES 280 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad~~~~~--v~~~d~~~~~~-~~~~~~~~g~~~~~~pdGia~d~~g~l~va-~~~~~~~~v~~~ 280 (335)
...||++++.- .+.++.+..+. +|.++.+..+. ....+. +..-.-++.+++--.+.+ +...+.++|.+.
T Consensus 375 ~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~------~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 375 EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFK------LGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred CcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccc------ccceeecccCCCcceEEEecCccceEEEeec
Confidence 37899999766 78888766664 45555444320 011121 222445677776543334 332233555553
No 361
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=65.24 E-value=14 Score=20.95 Aligned_cols=26 Identities=31% Similarity=0.289 Sum_probs=19.0
Q ss_pred CCeEEEEEecCCCCccceEEEEECCCCeEEEE
Q 039428 112 RNRLLVAFTDVLGNKYSALAAYDLSTWKRLFL 143 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~ 143 (335)
++.+|++..+ ..++.+|.++|+..+.
T Consensus 6 ~~~v~~~~~~------g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 6 DGTVYVGSTD------GTLYALDAKTGEILWT 31 (33)
T ss_pred CCEEEEEcCC------CEEEEEEcccCcEEEE
Confidence 5688885332 3599999999888754
No 362
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=65.15 E-value=1.7e+02 Score=29.94 Aligned_cols=158 Identities=13% Similarity=0.146 Sum_probs=85.2
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCC--cceEEEeCCCCeEEEEEecCCCCcc
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNA--TMGIAVDRPRNRLLVAFTDVLGNKY 127 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~--p~Gi~~d~~~g~l~v~~~D~~~~~~ 127 (335)
.-.++-|+|.+..+..+..+.++..|.+ +.+. + +... ..+..++.|.. -.|.-+.+ +++.+++.+-.
T Consensus 269 WV~sv~W~p~~~~LLSASaDksmiiW~p-d~~t-G-iWv~--~vRlGe~gg~a~GF~g~lw~~-n~~~ii~~g~~----- 337 (764)
T KOG1063|consen 269 WVYSVWWHPEGLDLLSASADKSMIIWKP-DENT-G-IWVD--VVRLGEVGGSAGGFWGGLWSP-NSNVIIAHGRT----- 337 (764)
T ss_pred ceEEEEEccchhhheecccCcceEEEec-CCcc-c-eEEE--EEEeecccccccceeeEEEcC-CCCEEEEeccc-----
Confidence 5678999999977777777888888864 3431 0 1111 22233333211 34555665 66777754322
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
+.++.|.... ...+.......+. .....|++-||.|..+.+-+...+-..|.+-|+.... ..+..|+ -.+.-.
T Consensus 338 Gg~hlWkt~d-~~~w~~~~~iSGH-~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~w---HEiaRPQ--iHGyDl 410 (764)
T KOG1063|consen 338 GGFHLWKTKD-KTFWTQEPVISGH-VDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEW---HEIARPQ--IHGYDL 410 (764)
T ss_pred CcEEEEeccC-ccceeeccccccc-cccceeeeecCCCCEEEEeccccceeeecccccccce---eeecccc--cccccc
Confidence 2355554111 1112111111122 5678899999999999987666555566665554331 1233332 122335
Q ss_pred CeEEEccCCeEEEEECCC
Q 039428 208 NGIVYHPDGFLIVIHMCS 225 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~ 225 (335)
+.+++-+....||+-...
T Consensus 411 ~c~~~vn~~~~FVSgAdE 428 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADE 428 (764)
T ss_pred eeeehccCCceeeecccc
Confidence 667777655666665433
No 363
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=64.83 E-value=27 Score=20.78 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=19.1
Q ss_pred CeEEEEECCCCEEEEEeCCCCceeEEEEe
Q 039428 216 GFLIVIHMCSGNLFKIDIRKEEEEVKLIE 244 (335)
Q Consensus 216 g~Lyvad~~~~~v~~~d~~~~~~~~~~~~ 244 (335)
|.+|+. +.++.|+.+|.+.++ .+-.+.
T Consensus 1 ~~v~~~-~~~g~l~AlD~~TG~-~~W~~~ 27 (38)
T PF01011_consen 1 GRVYVG-TPDGYLYALDAKTGK-VLWKFQ 27 (38)
T ss_dssp TEEEEE-TTTSEEEEEETTTTS-EEEEEE
T ss_pred CEEEEe-CCCCEEEEEECCCCC-EEEeee
Confidence 356777 788889999988875 444444
No 364
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=64.14 E-value=39 Score=32.60 Aligned_cols=139 Identities=19% Similarity=0.195 Sum_probs=85.6
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEc
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d 181 (335)
.|.-+.... +|+-.+. ....+ .|..||..++.+.+-.++. -...|+++-.+-.+|. =....-+|++|
T Consensus 131 GPY~~~ytr-nGrhlll-gGrKG----HlAa~Dw~t~~L~~Ei~v~------Etv~Dv~~LHneq~~A-VAQK~y~yvYD 197 (545)
T KOG1272|consen 131 GPYHLDYTR-NGRHLLL-GGRKG----HLAAFDWVTKKLHFEINVM------ETVRDVTFLHNEQFFA-VAQKKYVYVYD 197 (545)
T ss_pred CCeeeeecC-CccEEEe-cCCcc----ceeeeecccceeeeeeehh------hhhhhhhhhcchHHHH-hhhhceEEEec
Confidence 577788875 6665553 33333 4999999999888666552 2344565554433332 24456677888
Q ss_pred cCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcC
Q 039428 182 VEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLS 261 (335)
Q Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~ 261 (335)
.+|..+--+. .....+-+-|-|-.+|+++-..+|.+.-.|.+.++ .+..+... .+..+-|...|
T Consensus 198 ~~GtElHClk-----------~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gk-lVa~~~t~----~G~~~vm~qNP 261 (545)
T KOG1272|consen 198 NNGTELHCLK-----------RHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGK-LVASIRTG----AGRTDVMKQNP 261 (545)
T ss_pred CCCcEEeehh-----------hcCchhhhcccchhheeeecccCCceEEEeechhh-hhHHHHcc----CCccchhhcCC
Confidence 8776543221 12235667788888999999999999889998874 33333321 12356666666
Q ss_pred CCcEEEEe
Q 039428 262 PTKLVVAG 269 (335)
Q Consensus 262 ~g~l~va~ 269 (335)
-+-+.-.+
T Consensus 262 ~NaVih~G 269 (545)
T KOG1272|consen 262 YNAVIHLG 269 (545)
T ss_pred ccceEEEc
Confidence 55444443
No 365
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.69 E-value=1.6e+02 Score=29.29 Aligned_cols=153 Identities=17% Similarity=0.088 Sum_probs=82.0
Q ss_pred EEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC--CCc--ceEEEeCCCCeEEEEEecCCCCccce
Q 039428 55 KWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG--NAT--MGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 55 a~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~--~~p--~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
....+.++++.+ .....|+.+|-..|+ |+++ |-....... -.| -+-..++ .+.|.=. .| ++
T Consensus 340 L~~~dsnlil~~~~~~~~l~klDIE~GK----IVeE--Wk~~~di~mv~~t~d~K~~Ql~~-e~TlvGL-s~------n~ 405 (644)
T KOG2395|consen 340 LHRADSNLILMDGGEQDKLYKLDIERGK----IVEE--WKFEDDINMVDITPDFKFAQLTS-EQTLVGL-SD------NS 405 (644)
T ss_pred hhccccceEeeCCCCcCcceeeecccce----eeeE--eeccCCcceeeccCCcchhcccc-cccEEee-cC------Cc
Confidence 345567888888 666889999977676 5664 532222110 001 1112232 3444321 22 46
Q ss_pred EEEEECCCC-e-EEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccccc
Q 039428 130 LAAYDLSTW-K-RLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGL 207 (335)
Q Consensus 130 v~~~d~~~~-~-~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p 207 (335)
|.+|||+-. . .+.......-. ..+..+-.+...+|.+.|+ +..|.|..+|.-+.....+- |.+ +...
T Consensus 406 vfriDpRv~~~~kl~~~q~kqy~-~k~nFsc~aTT~sG~Ivvg-S~~GdIRLYdri~~~AKTAl-PgL--------G~~I 474 (644)
T KOG2395|consen 406 VFRIDPRVQGKNKLAVVQSKQYS-TKNNFSCFATTESGYIVVG-SLKGDIRLYDRIGRRAKTAL-PGL--------GDAI 474 (644)
T ss_pred eEEecccccCcceeeeeeccccc-cccccceeeecCCceEEEe-ecCCcEEeehhhhhhhhhcc-ccc--------CCce
Confidence 999999732 1 22122221111 1455666777788877775 67788888887554332100 111 1236
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~ 233 (335)
.+|.++.||.-+++.+.+ .|..+++
T Consensus 475 ~hVdvtadGKwil~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 475 KHVDVTADGKWILATCKT-YLLLIDT 499 (644)
T ss_pred eeEEeeccCcEEEEeccc-EEEEEEE
Confidence 789999999444454443 4555554
No 366
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=63.53 E-value=13 Score=34.71 Aligned_cols=56 Identities=21% Similarity=0.354 Sum_probs=31.8
Q ss_pred ceEEEEECCC-CeEEEEeecCCCccCCCCCCceeECCCC---cEEEEeCCCCeEEEEccCC
Q 039428 128 SALAAYDLST-WKRLFLTQLSGKSEEKSTADDIAVDAEG---NAYVTDVVSSKIWKVGVEG 184 (335)
Q Consensus 128 ~~v~~~d~~~-~~~~~~~~~~~~~~~~~~p~~~~vd~~G---~lyV~d~~~~~I~~~d~~g 184 (335)
..|+++|+++ |+++..+..+....+...|.-+-.|.|| .+|+.|.. |.|||+|..+
T Consensus 181 ~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~vYaGDl~-GnlwR~dl~~ 240 (335)
T PF05567_consen 181 AALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDRVYAGDLG-GNLWRFDLSS 240 (335)
T ss_dssp EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-EEEEEETT-SEEEEEE--T
T ss_pred cEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEEEEEEcCC-CcEEEEECCC
Confidence 6899999999 8877555543211122333323234555 48998864 8999999865
No 367
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=62.52 E-value=1.6e+02 Score=28.93 Aligned_cols=143 Identities=13% Similarity=0.047 Sum_probs=82.3
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-.|+.|.++++.+.....++.+..||. ...-| .. .+.... .....|++.|-...|.+..+ ...+ ..
T Consensus 303 eVCgLkws~d~~~lASGgnDN~~~Iwd~-~~~~p---~~--~~~~H~----aAVKA~awcP~q~~lLAsGG-Gs~D--~~ 369 (484)
T KOG0305|consen 303 EVCGLKWSPDGNQLASGGNDNVVFIWDG-LSPEP---KF--TFTEHT----AAVKALAWCPWQSGLLATGG-GSAD--RC 369 (484)
T ss_pred eeeeeEECCCCCeeccCCCccceEeccC-CCccc---cE--EEeccc----eeeeEeeeCCCccCceEEcC-CCcc--cE
Confidence 4579999999987766688899999984 23211 01 121111 24568888887777877532 2223 46
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCc-EEEEe-CCCC--eEEEEccCCcEEEEecCCcccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGN-AYVTD-VVSS--KIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~-lyV~d-~~~~--~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
|..||..+++.+..++- ....-.+...+..+ +..+- ...+ +||++..-.....+.+ ...
T Consensus 370 i~fwn~~~g~~i~~vdt------gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g-----------H~~ 432 (484)
T KOG0305|consen 370 IKFWNTNTGARIDSVDT------GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLG-----------HTS 432 (484)
T ss_pred EEEEEcCCCcEeccccc------CCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecC-----------Ccc
Confidence 88899998877643332 34455677777764 44442 2234 4555533211111111 112
Q ss_pred ccCeEEEccCC-eEEEEE
Q 039428 206 GLNGIVYHPDG-FLIVIH 222 (335)
Q Consensus 206 ~p~Gia~~~dg-~Lyvad 222 (335)
..--++++||| .+.++.
T Consensus 433 RVl~la~SPdg~~i~t~a 450 (484)
T KOG0305|consen 433 RVLYLALSPDGETIVTGA 450 (484)
T ss_pred eeEEEEECCCCCEEEEec
Confidence 25568999999 555443
No 368
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=62.32 E-value=1.2e+02 Score=30.27 Aligned_cols=165 Identities=13% Similarity=0.121 Sum_probs=86.6
Q ss_pred EcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCC-CCeEEEEEecC
Q 039428 44 YHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRP-RNRLLVAFTDV 122 (335)
Q Consensus 44 ~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~-~g~l~v~~~D~ 122 (335)
+.+-.-.-..+.|..+|.++..+..+-+|.+||+- ..+ .+. .+. .+.. .....+.+-|. ++++.+..
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~-~~K---llh---sI~-TgHt-aNIFsvKFvP~tnnriv~sg--- 113 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPF-EYK---LLH---SIS-TGHT-ANIFSVKFVPYTNNRIVLSG--- 113 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecch-hcc---eee---eee-cccc-cceeEEeeeccCCCeEEEec---
Confidence 34444467899999999988777888899999864 321 111 221 2222 13445566554 45666632
Q ss_pred CCCccceEEEEECCCCeEE---EEeecCC--CccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEEecCCccc
Q 039428 123 LGNKYSALAAYDLSTWKRL---FLTQLSG--KSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFT 196 (335)
Q Consensus 123 ~~~~~~~v~~~d~~~~~~~---~~~~~~~--~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~ 196 (335)
.++ ..|..||++..+-. ....... -.-.....--+++.|+| +.|.+-+..|.|..+|..-.... .+.-.
T Consensus 114 AgD--k~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c---~p~~~ 188 (758)
T KOG1310|consen 114 AGD--KLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC---NPDED 188 (758)
T ss_pred cCc--ceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC---Ccccc
Confidence 233 36889998642110 0000000 00002344457888877 65555577788888876431110 00000
Q ss_pred cc----cccccccccCeEEEccCCeEEEEECCC
Q 039428 197 AK----EWYKNVFGLNGIVYHPDGFLIVIHMCS 225 (335)
Q Consensus 197 ~~----~~~~~~~~p~Gia~~~dg~Lyvad~~~ 225 (335)
.+ ...+++.....++++|...-|.+-.++
T Consensus 189 ~~~~l~ny~~~lielk~ltisp~rp~~laVGgs 221 (758)
T KOG1310|consen 189 CPSILVNYNPQLIELKCLTISPSRPYYLAVGGS 221 (758)
T ss_pred ccHHHHHhchhhheeeeeeecCCCCceEEecCC
Confidence 00 012345567788999877333333333
No 369
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=61.31 E-value=1.3e+02 Score=30.03 Aligned_cols=72 Identities=19% Similarity=0.191 Sum_probs=55.0
Q ss_pred CCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeC
Q 039428 154 STADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 154 ~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~ 233 (335)
..+.-.+.+|+-...|.....+.|..+|...+....... ..-|+-+++.|+|.+++.-...|+|.-||.
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka-----------~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKA-----------EFIPTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeee-----------cccceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 455567778887777777888999999987665443221 134899999999988888888999999998
Q ss_pred CCC
Q 039428 234 RKE 236 (335)
Q Consensus 234 ~~~ 236 (335)
.-.
T Consensus 329 ALs 331 (545)
T PF11768_consen 329 ALS 331 (545)
T ss_pred ecC
Confidence 764
No 370
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=61.24 E-value=1.5e+02 Score=28.05 Aligned_cols=166 Identities=10% Similarity=0.096 Sum_probs=91.5
Q ss_pred EcCCCcceeeeEEcCC--CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEE-Ee
Q 039428 44 YHSPSFLCETAKWDDV--GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVA-FT 120 (335)
Q Consensus 44 ~~~~~~~pegia~d~~--g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~-~~ 120 (335)
+.+.+....++.|+|- |.++ ..--.+.|+.+.+.++.+ .+.++++.. . ..+..+|..+|....+++. ++
T Consensus 207 ~~ghk~EGy~LdWSp~~~g~Ll-sGDc~~~I~lw~~~~g~W---~vd~~Pf~g-H---~~SVEDLqWSptE~~vfaScS~ 278 (440)
T KOG0302|consen 207 FNGHKGEGYGLDWSPIKTGRLL-SGDCVKGIHLWEPSTGSW---KVDQRPFTG-H---TKSVEDLQWSPTEDGVFASCSC 278 (440)
T ss_pred ecccCccceeeecccccccccc-cCccccceEeeeeccCce---eecCccccc-c---ccchhhhccCCccCceEEeeec
Confidence 3333444567788772 3222 221135677776555553 112112211 1 1356788888766667664 33
Q ss_pred cCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC----cEEEEecCCccc
Q 039428 121 DVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG----QLLSIIRSPLFT 196 (335)
Q Consensus 121 D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g----~~~~~~~~~~~~ 196 (335)
| +.|.+||.+.+.....+... .. ..-.|-|...++=.+.++....|.+..+|... +.+. .|.
T Consensus 279 D------gsIrIWDiRs~~~~~~~~~k--Ah-~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA-----~fk 344 (440)
T KOG0302|consen 279 D------GSIRIWDIRSGPKKAAVSTK--AH-NSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVA-----TFK 344 (440)
T ss_pred C------ceEEEEEecCCCccceeEee--cc-CCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcce-----eEE
Confidence 3 35999998877322111111 01 12344455555534777777788888887652 1111 121
Q ss_pred cccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 197 AKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 197 ~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
. ...-...|.+.|.. ..+.+....++|...|+.-.
T Consensus 345 ~-----Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 345 Y-----HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred e-----ccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 1 11126889999965 77777778889888887654
No 371
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=61.18 E-value=71 Score=24.28 Aligned_cols=53 Identities=21% Similarity=0.314 Sum_probs=32.6
Q ss_pred CceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEE
Q 039428 157 DDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNL 228 (335)
Q Consensus 157 ~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v 228 (335)
.-+.++.+|++++.+..+..||.=+... ..++..+.+..||+|.+-+..+..|
T Consensus 56 ~~l~l~~dGnLvl~~~~g~~vW~S~t~~-------------------~~~~~~~~L~ddGnlvl~~~~~~~~ 108 (114)
T smart00108 56 CTLTLQSDGNLVLYDGDGRVVWSSNTTG-------------------ANGNYVLVLLDDGNLVIYDSDGNFL 108 (114)
T ss_pred EEEEEeCCCCEEEEeCCCCEEEEecccC-------------------CCCceEEEEeCCCCEEEECCCCCEE
Confidence 4578888999999877655555433220 0124456777788776665544433
No 372
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=61.00 E-value=1.1e+02 Score=28.57 Aligned_cols=84 Identities=8% Similarity=0.099 Sum_probs=50.8
Q ss_pred CCCCCceeECCCCcEEEEeCCC-----CeEEEEccCCcEEEEecCCcc-ccccccccccccCeEEEccCC--eEEEEECC
Q 039428 153 KSTADDIAVDAEGNAYVTDVVS-----SKIWKVGVEGQLLSIIRSPLF-TAKEWYKNVFGLNGIVYHPDG--FLIVIHMC 224 (335)
Q Consensus 153 ~~~p~~~~vd~~G~lyV~d~~~-----~~I~~~d~~g~~~~~~~~~~~-~~~~~~~~~~~p~Gia~~~dg--~Lyvad~~ 224 (335)
..++..|..-.+|.+|++.-.+ -.||.|+.-....+++.+-.. ..|+......---.+.+|..| ++|+.|..
T Consensus 182 GTf~yNmgAl~nGH~Y~asLSG~~~SPLKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdna 261 (442)
T PF15416_consen 182 GTFSYNMGALVNGHSYLASLSGGKASPLKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNA 261 (442)
T ss_pred cccccchhhhcCCeEEEEeccCCCCCceEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCc
Confidence 5677777766789999986432 378888754443333222100 111111111113456777755 89999988
Q ss_pred CCEEEEEeCCCC
Q 039428 225 SGNLFKIDIRKE 236 (335)
Q Consensus 225 ~~~v~~~d~~~~ 236 (335)
.-.+.|++..+-
T Consensus 262 at~ilR~~vsn~ 273 (442)
T PF15416_consen 262 ATNILRFTVSNY 273 (442)
T ss_pred cceEEEEEccCc
Confidence 899999998875
No 373
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=60.82 E-value=73 Score=24.32 Aligned_cols=55 Identities=18% Similarity=0.317 Sum_probs=31.7
Q ss_pred CCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEE
Q 039428 156 ADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLF 229 (335)
Q Consensus 156 p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~ 229 (335)
+.-+.+..+|++++.|..+..||.=+..+ . .++..+.+..||+|.+-+..+..||
T Consensus 56 ~~~l~l~~dGnLvl~~~~g~~vW~S~~~~-~------------------~~~~~~~L~ddGnlvl~~~~~~~~W 110 (116)
T cd00028 56 SCTLTLQSDGNLVIYDGSGTVVWSSNTTR-V------------------NGNYVLVLLDDGNLVLYDSDGNFLW 110 (116)
T ss_pred CEEEEEecCCCeEEEcCCCcEEEEecccC-C------------------CCceEEEEeCCCCEEEECCCCCEEE
Confidence 34578888899988877655555433321 0 1234556777886665554433333
No 374
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=60.52 E-value=1.3e+02 Score=27.15 Aligned_cols=187 Identities=10% Similarity=0.061 Sum_probs=88.6
Q ss_pred CCCEEEEE-ecC-----CeEEEEECCCCCCCcceeeeeEEeecCCcCC-----CCcceEEEeCCCCeEEEEEecCCCC--
Q 039428 59 VGRRFLVS-FLD-----GGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-----NATMGIAVDRPRNRLLVAFTDVLGN-- 125 (335)
Q Consensus 59 ~g~~~~~~-~~~-----~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-----~~p~Gi~~d~~~g~l~v~~~D~~~~-- 125 (335)
++..|++. ..+ +.++.+|++... |. .|+..| +--+.-.+- ++.+||.. ....+
T Consensus 88 ~d~~yvWGGRND~egaCN~Ly~fDp~t~~----------W~-~p~v~G~vPgaRDGHsAcV~--gn~MyiFG-Gye~~a~ 153 (392)
T KOG4693|consen 88 QDKAYVWGGRNDDEGACNLLYEFDPETNV----------WK-KPEVEGFVPGARDGHSACVW--GNQMYIFG-GYEEDAQ 153 (392)
T ss_pred cceEEEEcCccCcccccceeeeecccccc----------cc-ccceeeecCCccCCceeeEE--CcEEEEec-ChHHHHH
Confidence 55788887 332 579999964333 21 222211 111223332 56777742 11100
Q ss_pred c-cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEe--------------CCCCeEEEEccCCcEEEEe
Q 039428 126 K-YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTD--------------VVSSKIWKVGVEGQLLSII 190 (335)
Q Consensus 126 ~-~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d--------------~~~~~I~~~d~~g~~~~~~ 190 (335)
+ ...+.++|.++.+-...-....|..=-.+-...++ ++++||-. ...++|..+|...+.-.
T Consensus 154 ~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~--~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~-- 229 (392)
T KOG4693|consen 154 RFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVI--DGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWT-- 229 (392)
T ss_pred hhhccceeEeccceeeeehhccCCCchhhhhhhhhhc--cceEEEeccccccCCCccchhhhhcceeEEEeccccccc--
Confidence 0 13488888887644321111111100111122333 37888842 23578888887754321
Q ss_pred cCCccccccccccccccCeEEEccCCeEEEEECC-------CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC
Q 039428 191 RSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMC-------SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT 263 (335)
Q Consensus 191 ~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~-------~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g 263 (335)
+ .+..+ ..|.+...+. +|--+|.+|+--.- -+.+|.||+.+. ...+|...|..+.+.-.-.++-..+
T Consensus 230 -r-~p~~~-~~P~GRRSHS-~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~--~W~~I~~~Gk~P~aRRRqC~~v~g~ 303 (392)
T KOG4693|consen 230 -R-TPENT-MKPGGRRSHS-TFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTS--MWSVISVRGKYPSARRRQCSVVSGG 303 (392)
T ss_pred -c-CCCCC-cCCCcccccc-eEEEcceEEEecccchhhhhhhcceeecccccc--hheeeeccCCCCCcccceeEEEECC
Confidence 1 11110 1112222333 33336777764322 356899999886 6666766553322222345555556
Q ss_pred cEEEEe
Q 039428 264 KLVVAG 269 (335)
Q Consensus 264 ~l~va~ 269 (335)
++|.-+
T Consensus 304 kv~LFG 309 (392)
T KOG4693|consen 304 KVYLFG 309 (392)
T ss_pred EEEEec
Confidence 666653
No 375
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=60.17 E-value=1e+02 Score=29.27 Aligned_cols=123 Identities=5% Similarity=-0.001 Sum_probs=65.8
Q ss_pred CCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEe
Q 039428 153 KSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKID 232 (335)
Q Consensus 153 ~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d 232 (335)
++-.|.+.|..+|+..++....-++.+++.+--..+....+.-.. ..+...+.-.++|+..++-.++-...++|.+-|
T Consensus 56 ~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~--~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HD 133 (609)
T KOG4227|consen 56 TGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVM--EHPHRSNIFSLEFDLENRFLYSGERWGTVIKHD 133 (609)
T ss_pred ccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceec--cCccccceEEEEEccCCeeEecCCCcceeEeee
Confidence 456788999999988887654434444443321111000000000 011223455788987774444555677888888
Q ss_pred CCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 233 IRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 233 ~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
+.+.+ .+.++.-... -+..+||...|-.+.+++....+.+.+++.
T Consensus 134 iEt~q-si~V~~~~~~--~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~ 178 (609)
T KOG4227|consen 134 IETKQ-SIYVANENNN--RGDVYHMDQHPTDNTLIVVTRAKLVSFIDN 178 (609)
T ss_pred cccce-eeeeecccCc--ccceeecccCCCCceEEEEecCceEEEEec
Confidence 88764 4444432211 133678888777666655443344544443
No 376
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=59.81 E-value=1.5e+02 Score=27.61 Aligned_cols=163 Identities=12% Similarity=0.144 Sum_probs=85.6
Q ss_pred ceeeeEEcC--CCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCC-CCeEEEEEecCCCCc
Q 039428 50 LCETAKWDD--VGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRP-RNRLLVAFTDVLGNK 126 (335)
Q Consensus 50 ~pegia~d~--~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~-~g~l~v~~~D~~~~~ 126 (335)
.-.++.+.. ..+..++...+|.|..||.. ... +...+......++. -+.+|.. +++++.+.......
T Consensus 72 ~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R-s~~------e~a~~~~~~~~~~~--f~~ld~nck~~ii~~GtE~~~s- 141 (376)
T KOG1188|consen 72 TTNGVRFISCDSPHGVISCSSDGTVRLWDIR-SQA------ESARISWTQQSGTP--FICLDLNCKKNIIACGTELTRS- 141 (376)
T ss_pred cccceEEecCCCCCeeEEeccCCeEEEEEee-cch------hhhheeccCCCCCc--ceEeeccCcCCeEEeccccccC-
Confidence 346777755 56666666789999999853 321 11122222221112 2334421 67888864322211
Q ss_pred cceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccCCcEEEEecCCcccccccccccc
Q 039428 127 YSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 127 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~ 205 (335)
...|+.||.+..+...+ .+.. .. ..-...+.|.|.. ++.++.+..|-|-.||.++.... +.... ......
T Consensus 142 ~A~v~lwDvR~~qq~l~-~~~e-SH-~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee---DaL~~---viN~~s 212 (376)
T KOG1188|consen 142 DASVVLWDVRSEQQLLR-QLNE-SH-NDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE---DALLH---VINHGS 212 (376)
T ss_pred ceEEEEEEeccccchhh-hhhh-hc-cCcceeEEecCCCCCeEEeecccceEEeeecCCCcch---hhHHH---hhcccc
Confidence 15788999876544211 1110 00 1223447788875 79999999999999998754221 00000 001122
Q ss_pred ccCeEEEccCC--eEE-EEECCCCEEEEE
Q 039428 206 GLNGIVYHPDG--FLI-VIHMCSGNLFKI 231 (335)
Q Consensus 206 ~p~Gia~~~dg--~Ly-vad~~~~~v~~~ 231 (335)
...-+.|..++ ++| ++...+=.+|..
T Consensus 213 SI~~igw~~~~ykrI~clTH~Etf~~~el 241 (376)
T KOG1188|consen 213 SIHLIGWLSKKYKRIMCLTHMETFAIYEL 241 (376)
T ss_pred eeeeeeeecCCcceEEEEEccCceeEEEc
Confidence 35667777777 665 333333344433
No 377
>PF14298 DUF4374: Domain of unknown function (DUF4374)
Probab=56.39 E-value=2e+02 Score=27.91 Aligned_cols=57 Identities=21% Similarity=0.251 Sum_probs=36.3
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeC--C--CCeEEEEccCCcE
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDV--V--SSKIWKVGVEGQL 186 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~--~--~~~I~~~d~~g~~ 186 (335)
.++.++|..++++.+...++.. ......+..-+ .+|.+|+.-. . ...||++|+....
T Consensus 367 ~~laI~d~~~kt~t~V~glP~~-~is~~~~~~~v-e~G~aYi~Vtt~~g~~~~IY~iDp~Tat 427 (435)
T PF14298_consen 367 KKLAIFDVSNKTFTWVTGLPAD-LISGFGNAPYV-ENGKAYIPVTTEDGSDPYIYKIDPATAT 427 (435)
T ss_pred ceEEEEEccCceeEEeccCChh-hccccccceEe-eCCEEEEEEeecCCCceeEEEEcCcccc
Confidence 5688999998888776666432 11123333334 5788888532 2 2689999987544
No 378
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=55.87 E-value=1.5e+02 Score=26.41 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=65.0
Q ss_pred CCCCCceeECCC-CcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeEEEcc-CCeEEEEECCCCEEE
Q 039428 153 KSTADDIAVDAE-GNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHP-DGFLIVIHMCSGNLF 229 (335)
Q Consensus 153 ~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~-dg~Lyvad~~~~~v~ 229 (335)
....|.|.+||. +.++.+. +.+.+|.+|.+ |+..+.+... .-..+.++.-. .+.++ +-..+|.+.
T Consensus 114 vPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGH----------tDYvH~vv~R~~~~qil-sG~EDGtvR 181 (325)
T KOG0649|consen 114 VPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGH----------TDYVHSVVGRNANGQIL-SGAEDGTVR 181 (325)
T ss_pred CCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCC----------cceeeeeeecccCccee-ecCCCccEE
Confidence 456689999986 5677775 78899999986 5555543211 11245555522 33444 455677787
Q ss_pred EEeCCCCceeEEEEeccCCcCCCCCC----eEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 230 KIDIRKEEEEVKLIELRGGSSLSLGD----GLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 230 ~~d~~~~~~~~~~~~~~g~~~~~~pd----Gia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
..|.+..+ .++.+..-.....-.|| =++++-+....|++.+ ....+..+
T Consensus 182 vWd~kt~k-~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG-p~lslwhL 234 (325)
T KOG0649|consen 182 VWDTKTQK-HVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG-PKLSLWHL 234 (325)
T ss_pred EEeccccc-eeEEeccccChhhcCcccCceeEEEeccCceEEecCC-CceeEEec
Confidence 78888765 55555421111122233 2566666666666553 33444443
No 379
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.81 E-value=1.6e+02 Score=26.40 Aligned_cols=156 Identities=11% Similarity=0.101 Sum_probs=88.1
Q ss_pred eeeeEEcCCC-CEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 51 CETAKWDDVG-RRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 51 pegia~d~~g-~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-+++|++.- +.+++...+|++..+|...... ++....+.. +-...+..+..+++.++++ ... ..
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~--------Pi~~~kEH~-~EV~Svdwn~~~r~~~lts--SWD---~T 128 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSK--------PIHKFKEHK-REVYSVDWNTVRRRIFLTS--SWD---GT 128 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCc--------chhHHHhhh-hheEEeccccccceeEEee--ccC---Cc
Confidence 4588998874 4555557899999998432222 122222211 2234454454456666653 221 24
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEc--cCCcEEEEecCCccccccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVG--VEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d--~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
|..||+.-..-+.. +.+ . .......++.|. ++++.+-+..+.+..+| ..|+... +....+ .
T Consensus 129 iKLW~~~r~~Sv~T--f~g--h-~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~-i~ah~~----------E 192 (311)
T KOG0277|consen 129 IKLWDPNRPNSVQT--FNG--H-NSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMS-IEAHNS----------E 192 (311)
T ss_pred eEeecCCCCcceEe--ecC--C-ccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeE-EEeccc----------e
Confidence 77888765443322 211 1 234456777875 78888877776555554 4466544 211111 1
Q ss_pred cCeEEEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 207 LNGIVYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 207 p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
.-..-+++-. ++.++...++.|+..|+..-
T Consensus 193 il~cdw~ky~~~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 193 ILCCDWSKYNHNVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred eEeecccccCCcEEEecCCCceEEEEehhhc
Confidence 2334455533 78888888899999998875
No 380
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=54.47 E-value=1.8e+02 Score=26.75 Aligned_cols=126 Identities=13% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCCCceeECC-CCcEEEEeCCCCeEEEEccCCcE----EEEecCCcc--ccccccccccccCeEEEcc-CCeEEEEECCC
Q 039428 154 STADDIAVDA-EGNAYVTDVVSSKIWKVGVEGQL----LSIIRSPLF--TAKEWYKNVFGLNGIVYHP-DGFLIVIHMCS 225 (335)
Q Consensus 154 ~~p~~~~vd~-~G~lyV~d~~~~~I~~~d~~g~~----~~~~~~~~~--~~~~~~~~~~~p~Gia~~~-dg~Lyvad~~~ 225 (335)
+..|.+.+|+ .|+..++....+.|.++|.+... .-++-.... ..+.......+...+.+-| |.-+|.+.+.+
T Consensus 44 GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFD 123 (397)
T KOG4283|consen 44 GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFD 123 (397)
T ss_pred CccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccccc
Q ss_pred CEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE-ecCCCeEEEEEcCCC
Q 039428 226 GNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA-GNPYPSARLVESSDG 283 (335)
Q Consensus 226 ~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va-~~~~~~~~v~~~~~~ 283 (335)
+.+.+.|.+.-+ +...|..++ .-+-..|.--+-.+-.+| +..+..++.-+...|
T Consensus 124 htlKVWDtnTlQ-~a~~F~me~---~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG 178 (397)
T KOG4283|consen 124 HTLKVWDTNTLQ-EAVDFKMEG---KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG 178 (397)
T ss_pred ceEEEeecccce-eeEEeecCc---eeehhhcChhhhcceEEEEecCCCcEEEEeccCC
No 381
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=53.87 E-value=33 Score=30.73 Aligned_cols=66 Identities=14% Similarity=0.224 Sum_probs=47.6
Q ss_pred ccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEE
Q 039428 206 GLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSAR 276 (335)
Q Consensus 206 ~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~ 276 (335)
+.+|+.+-||+.++.+...++||.+|...+.. .+.++.... ++...+|+.++-.+..+.....+|.
T Consensus 253 Gv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-pLAVLkyHs----agvn~vAfspd~~lmAaaskD~rIS 318 (323)
T KOG0322|consen 253 GVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-PLAVLKYHS----AGVNAVAFSPDCELMAAASKDARIS 318 (323)
T ss_pred CccceEEccCCcEEeecccCCcEEEEEeccCC-chhhhhhhh----cceeEEEeCCCCchhhhccCCceEE
Confidence 58999999999999999999999999888753 333343221 3467899999866666655334443
No 382
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=53.66 E-value=2.4e+02 Score=28.05 Aligned_cols=99 Identities=15% Similarity=0.177 Sum_probs=57.9
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC--CCcEEEEeCCCCeEEEEccCCcE-EEEecCCccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA--EGNAYVTDVVSSKIWKVGVEGQL-LSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~--~G~lyV~d~~~~~I~~~d~~g~~-~~~~~~~~~~~~~~~~~~ 204 (335)
..|+.|+..++++.+..... . ...+-....+. -|.+|-++ ...++..++...+. .+.+.. +.
T Consensus 80 g~v~~ys~~~g~it~~~st~---~-h~~~v~~~~~~~~~~ciyS~~-ad~~v~~~~~~~~~~~~~~~~----------~~ 144 (541)
T KOG4547|consen 80 GSVLLYSVAGGEITAKLSTD---K-HYGNVNEILDAQRLGCIYSVG-ADLKVVYILEKEKVIIRIWKE----------QK 144 (541)
T ss_pred ccEEEEEecCCeEEEEEecC---C-CCCcceeeecccccCceEecC-CceeEEEEecccceeeeeecc----------CC
Confidence 45888998888887443321 1 11222222222 25677553 44566777766433 332211 22
Q ss_pred cccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEe
Q 039428 205 FGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIE 244 (335)
Q Consensus 205 ~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~ 244 (335)
..+..++++|||.+.++ .+++|..+|.+..+ .++.|.
T Consensus 145 ~~~~sl~is~D~~~l~~--as~~ik~~~~~~ke-vv~~ft 181 (541)
T KOG4547|consen 145 PLVSSLCISPDGKILLT--ASRQIKVLDIETKE-VVITFT 181 (541)
T ss_pred CccceEEEcCCCCEEEe--ccceEEEEEccCce-EEEEec
Confidence 35889999999966554 47789999998874 455554
No 383
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=52.27 E-value=2.5e+02 Score=27.94 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=15.1
Q ss_pred eEEcCCCCEEEEEecCCeEEEEE
Q 039428 54 AKWDDVGRRFLVSFLDGGVGQVL 76 (335)
Q Consensus 54 ia~d~~g~~~~~~~~~~~I~~~d 76 (335)
-.|.++|.-++....+|.|-.|+
T Consensus 110 gRW~~dGtgLlt~GEDG~iKiWS 132 (737)
T KOG1524|consen 110 GRWSPDGAGLLTAGEDGVIKIWS 132 (737)
T ss_pred cccCCCCceeeeecCCceEEEEe
Confidence 35677776666666667777775
No 384
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=51.23 E-value=2.3e+02 Score=29.36 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=90.5
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEc
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d 181 (335)
.+.|.+.++...|.++ +... ..|+.+.+.................+...+|+.-..- -++..+-+.+|.|.++|
T Consensus 42 ~nAIs~nr~~~qiv~A-Grs~----lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWd 116 (839)
T KOG0269|consen 42 ANAISVNRDINQIVVA-GRSL----LKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWD 116 (839)
T ss_pred cceEeecCCcceeEEe-cccc----eeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEe
Confidence 3566666544555553 1111 2466666655433322222111112455677776642 45666778899999999
Q ss_pred cCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc
Q 039428 182 VEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL 260 (335)
Q Consensus 182 ~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d 260 (335)
..-.....+ ...|.. .....|-+.|++-. +++++-+.++.|.-+|+...+ ....+.-.. .....+.+.
T Consensus 117 lnk~~rnk~-l~~f~E-----H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~-S~~t~~~nS----ESiRDV~fs 185 (839)
T KOG0269|consen 117 LNKSIRNKL-LTVFNE-----HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK-SKSTFRSNS----ESIRDVKFS 185 (839)
T ss_pred cCccccchh-hhHhhh-----hccceeeeeeccCCccEEEecCCCceEEEEeeeccc-ccccccccc----hhhhceeec
Confidence 764110000 001221 22348999999876 999999999999999998864 333332111 224567776
Q ss_pred CC-CcEEEEecCCCeEEEEEc
Q 039428 261 SP-TKLVVAGNPYPSARLVES 280 (335)
Q Consensus 261 ~~-g~l~va~~~~~~~~v~~~ 280 (335)
+. ++.|++...++-++..+.
T Consensus 186 p~~~~~F~s~~dsG~lqlWDl 206 (839)
T KOG0269|consen 186 PGYGNKFASIHDSGYLQLWDL 206 (839)
T ss_pred cCCCceEEEecCCceEEEeec
Confidence 54 567777443344554443
No 385
>PF08309 LVIVD: LVIVD repeat; InterPro: IPR013211 This repeat is found in bacterial and archaeal cell surface proteins, many of which are hypothetical. The secondary structure corresponding to this repeat is predicted to comprise 4 beta-strands, which may associate to form a beta-propeller. The repeat copy number varies from 2-14. This repeat is sometimes found with the PKD domain IPR000601 from INTERPRO.
Probab=51.05 E-value=58 Score=20.20 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=21.8
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCc
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEE 237 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~ 237 (335)
..++++. .+++|+++..++ +..+|.....
T Consensus 4 a~~v~v~-g~yaYva~~~~G-l~IvDISnPs 32 (42)
T PF08309_consen 4 ARDVAVS-GNYAYVADGNNG-LVIVDISNPS 32 (42)
T ss_pred EEEEEEE-CCEEEEEeCCCC-EEEEECCCCC
Confidence 4567776 669999986655 7889998763
No 386
>PF11161 DUF2944: Protein of unknown function (DUF2946); InterPro: IPR021332 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=50.86 E-value=99 Score=26.10 Aligned_cols=69 Identities=14% Similarity=0.175 Sum_probs=47.6
Q ss_pred cCeEEEccCC--eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 207 LNGIVYHPDG--FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 207 p~Gia~~~dg--~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
..|==|-..| ++||.-..+--|+|+..... ........| ..+..|.++-+|.+|++|.... .++-+++.
T Consensus 64 ~~G~WfFQNGPQRVYV~Le~tP~v~Rl~~~~~--~~~l~thTg-~~~~~~~~~~lDe~G~l~l~t~--~g~glvhd 134 (187)
T PF11161_consen 64 EDGRWFFQNGPQRVYVELEYTPWVWRLQPEGG--DLGLVTHTG-APFEAPRACWLDEQGRLYLATP--LGVGLVHD 134 (187)
T ss_pred CCccEEEecCCEEEEEEeccCceEEEeccCCC--CCceeecCC-CcccchhheeECCCCCEEEecC--CceEEEec
Confidence 3455555566 78988888888999988644 233444344 3355589999999999999955 44555553
No 387
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=50.63 E-value=1.2e+02 Score=27.36 Aligned_cols=36 Identities=19% Similarity=0.341 Sum_probs=28.8
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEe
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIE 244 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~ 244 (335)
=.=++++||+.|++-...+|.|..||+.+. ....++
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~--~lf~I~ 81 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGS--ELFVIP 81 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccc--eeEEcC
Confidence 356899999988877788999999999986 444443
No 388
>TIGR03803 Gloeo_Verruco Gloeo_Verruco repeat. This model describes a rare protein repeat, found so far in two species of Verrucomicrobia (Chthoniobacter flavus and Verrucomicrobium spinosum) and in four different proteins of Gloeobacter violaceus PCC7421. In the Verrucomicrobial species, the repeat region is followed by a PEP-CTERM protein-sorting signal, suggesting an extracellular location.
Probab=50.46 E-value=40 Score=19.98 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=18.4
Q ss_pred CCcEEEEeC-----CCCeEEEEccCCcEE
Q 039428 164 EGNAYVTDV-----VSSKIWKVGVEGQLL 187 (335)
Q Consensus 164 ~G~lyV~d~-----~~~~I~~~d~~g~~~ 187 (335)
||++|-+-+ ..+.|+|++++|...
T Consensus 1 dg~lYGTT~~GG~~~~GTvf~~~~~g~~t 29 (34)
T TIGR03803 1 GGTLYGTTSGGGASGFGTLYRLSTAGGTT 29 (34)
T ss_pred CCcEEEEcccCCCCCceeEEEEcCCCCeE
Confidence 467787654 468999999998873
No 389
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=49.99 E-value=3.1e+02 Score=28.23 Aligned_cols=202 Identities=11% Similarity=0.081 Sum_probs=105.1
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-..+++-|||..+++. .+++++.+|+.+|.- +. .+.... ...+-++.+. +|..|+.. ..+ ..
T Consensus 14 ci~d~afkPDGsqL~lA-Ag~rlliyD~ndG~l----lq---tLKgHK---DtVycVAys~-dGkrFASG---~aD--K~ 76 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA-AGSRLLVYDTSDGTL----LQ---PLKGHK---DTVYCVAYAK-DGKRFASG---SAD--KS 76 (1081)
T ss_pred chheeEECCCCceEEEe-cCCEEEEEeCCCccc----cc---cccccc---ceEEEEEEcc-CCceeccC---CCc--ee
Confidence 45689999999988877 477999999877751 21 221111 2457788874 78888732 222 24
Q ss_pred EEEEECCC-CeEEEE-------eecCC-----------------Ccc-------CCCCCCceeECCCCcEEEEeCCCCeE
Q 039428 130 LAAYDLST-WKRLFL-------TQLSG-----------------KSE-------EKSTADDIAVDAEGNAYVTDVVSSKI 177 (335)
Q Consensus 130 v~~~d~~~-~~~~~~-------~~~~~-----------------~~~-------~~~~p~~~~vd~~G~lyV~d~~~~~I 177 (335)
|..|++.- |.+... ..+++ +.+ ...+.++-+-..||.+++-.-.+|+|
T Consensus 77 VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 77 VIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred EEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceE
Confidence 55565432 111100 00110 000 12445566667788877777788888
Q ss_pred EEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCC-----cCC-
Q 039428 178 WKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGG-----SSL- 251 (335)
Q Consensus 178 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~-----~~~- 251 (335)
..-+..|+....+..+.- .-...-+|+++|... ......+.++|.+. +.....++|. +.+
T Consensus 157 siRNk~gEek~~I~Rpgg-------~Nspiwsi~~~p~sg----~G~~di~aV~DW~q---TLSFy~LsG~~Igk~r~L~ 222 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGG-------SNSPIWSICWNPSSG----EGRNDILAVADWGQ---TLSFYQLSGKQIGKDRALN 222 (1081)
T ss_pred EeecCCCCcceEEeCCCC-------CCCCceEEEecCCCC----CCccceEEEEeccc---eeEEEEecceeecccccCC
Confidence 877777766554433210 011246888887421 11222344444432 1222222221 101
Q ss_pred CCCCeEEEcCCCcEEEEecCCCeEEEEEcCCC
Q 039428 252 SLGDGLALLSPTKLVVAGNPYPSARLVESSDG 283 (335)
Q Consensus 252 ~~pdGia~d~~g~l~va~~~~~~~~v~~~~~~ 283 (335)
-.|--+.+-++|.....+.-...+.. ...+|
T Consensus 223 FdP~CisYf~NGEy~LiGGsdk~L~~-fTR~G 253 (1081)
T KOG1538|consen 223 FDPCCISYFTNGEYILLGGSDKQLSL-FTRDG 253 (1081)
T ss_pred CCchhheeccCCcEEEEccCCCceEE-EeecC
Confidence 13667777778876555432233433 33444
No 390
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=49.45 E-value=1.6e+02 Score=29.44 Aligned_cols=125 Identities=13% Similarity=0.103 Sum_probs=78.0
Q ss_pred CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC--CcEEEEeCCCCeEE
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE--GNAYVTDVVSSKIW 178 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~--G~lyV~d~~~~~I~ 178 (335)
+..+.++... +|.+.+...|. -++.+||+-..+++..+.... ....-.+.|-|. .++.++......|.
T Consensus 51 GCVN~LeWn~-dG~lL~SGSDD-----~r~ivWd~~~~KllhsI~TgH----taNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 51 GCVNCLEWNA-DGELLASGSDD-----TRLIVWDPFEYKLLHSISTGH----TANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred ceecceeecC-CCCEEeecCCc-----ceEEeecchhcceeeeeeccc----ccceeEEeeeccCCCeEEEeccCcceEE
Confidence 3678899985 88888854332 369999998777665554311 122334556564 46888888888999
Q ss_pred EEccCCcEEEEecCCccccc--cccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 179 KVGVEGQLLSIIRSPLFTAK--EWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 179 ~~d~~g~~~~~~~~~~~~~~--~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
.+|.+.....--.. ....+ ...-......-||..|++ +.+.+-+..|.|..+|....
T Consensus 121 lfdl~~~~~~~~d~-~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREp 180 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDH-GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREP 180 (758)
T ss_pred EEeccccccccccc-CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCC
Confidence 99987422110000 00000 000012235568888888 88888889999999998763
No 391
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=49.21 E-value=3.7e+02 Score=28.98 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=63.5
Q ss_pred cceEEEeCCCCeEEEEEecCCCCccceEEEEECCC--CeEEEEeecCCC--ccCCCCCCceeECCCCc-EEEEeCCCCeE
Q 039428 103 TMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLST--WKRLFLTQLSGK--SEEKSTADDIAVDAEGN-AYVTDVVSSKI 177 (335)
Q Consensus 103 p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~--~~~~~~~~~~~~--~~~~~~p~~~~vd~~G~-lyV~d~~~~~I 177 (335)
..+.++|...+.+|++....... ....++... ......+.+..+ ..+....-++..-++.+ ++++ ..+|.|
T Consensus 24 ~~~~~~d~~sd~i~~~~~~~~~~---~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~-~~~Gdi 99 (928)
T PF04762_consen 24 ITATAFDSDSDSIYFVLGPNEID---YVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIA-LASGDI 99 (928)
T ss_pred cceEEEecCCCeEEEEECCCCcc---eEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEE-ECCceE
Confidence 45777887788898875422211 123333221 112222233211 11123444455556643 5554 557888
Q ss_pred EEE----ccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeC
Q 039428 178 WKV----GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDI 233 (335)
Q Consensus 178 ~~~----d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~ 233 (335)
..+ +++....+..+. + ..+..+++|+||+.+.+--++.++|.....
T Consensus 100 ~~~~~~~~~~~~~~E~VG~--v--------d~GI~a~~WSPD~Ella~vT~~~~l~~mt~ 149 (928)
T PF04762_consen 100 ILVREDPDPDEDEIEIVGS--V--------DSGILAASWSPDEELLALVTGEGNLLLMTR 149 (928)
T ss_pred EEEEccCCCCCceeEEEEE--E--------cCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence 888 666665554432 1 235788999999966655556777766644
No 392
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=48.20 E-value=1.6e+02 Score=30.39 Aligned_cols=157 Identities=12% Similarity=0.131 Sum_probs=86.0
Q ss_pred eeeEEcCC-CCEEEEEecCCeEEEEECCCCCCCcceeeeeEEe-ecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 52 ETAKWDDV-GRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLV-KEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 52 egia~d~~-g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~-~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
..+.|..- .+++.+...+|.|.+||.. .. ..+ +.+ .+.+. .+..+-+.+++..-++.+. ..+ + +.
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdln-k~-----~rn-k~l~~f~EH-~Rs~~~ldfh~tep~iliS--GSQ-D--g~ 157 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLN-KS-----IRN-KLLTVFNEH-ERSANKLDFHSTEPNILIS--GSQ-D--GT 157 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecC-cc-----ccc-hhhhHhhhh-ccceeeeeeccCCccEEEe--cCC-C--ce
Confidence 45556522 3455555778999999853 31 000 111 11221 1456788888766677773 221 2 56
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc-c
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG-L 207 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-p 207 (335)
|..||++..+-....... --...|+++.|. ++.|++-..+|.+..+|..--....+ .++. ..+ .
T Consensus 158 vK~~DlR~~~S~~t~~~n-----SESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~---k~~A------H~GpV 223 (839)
T KOG0269|consen 158 VKCWDLRSKKSKSTFRSN-----SESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK---KLTA------HNGPV 223 (839)
T ss_pred EEEEeeeccccccccccc-----chhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH---Hhhc------ccCce
Confidence 999999765433111111 234568999985 89999999999999999752111100 1110 011 2
Q ss_pred CeEEEccCCeEEEEECCCCEEEEEeCCC
Q 039428 208 NGIVYHPDGFLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~~~~v~~~d~~~ 235 (335)
-.+-++|++..+.+-..++.|-..+..+
T Consensus 224 ~c~nwhPnr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 224 LCLNWHPNREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred EEEeecCCCceeeecCCCccEEEEeccC
Confidence 3456677554444444445555555554
No 393
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=47.95 E-value=1.7e+02 Score=25.92 Aligned_cols=77 Identities=19% Similarity=0.366 Sum_probs=44.0
Q ss_pred EEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec---CCCeEEEEEcCC-----CcEEEEEeeeecCCCCCc
Q 039428 229 FKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN---PYPSARLVESSD-----GWETASVVAKFNGPTHRV 300 (335)
Q Consensus 229 ~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~---~~~~~~v~~~~~-----~~~~~~~~~~~~~p~~~~ 300 (335)
..+|+... +.+.+.+..+. .--|-++.+||++++++. +..+++++.... +|... ...+..+ ..+
T Consensus 49 ~~yD~~tn--~~rpl~v~td~---FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~--~~~m~~~-RWY 120 (243)
T PF07250_consen 49 VEYDPNTN--TFRPLTVQTDT---FCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTES--PNDMQSG-RWY 120 (243)
T ss_pred EEEecCCC--cEEeccCCCCC---cccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceEC--cccccCC-Ccc
Confidence 34566665 44444432211 123445678899888833 334577776543 24422 1223333 588
Q ss_pred ceEEEEeCCeEEE
Q 039428 301 ATAATVKDGRVYL 313 (335)
Q Consensus 301 Pt~va~~~g~lyV 313 (335)
||..++.+|++.|
T Consensus 121 pT~~~L~DG~vlI 133 (243)
T PF07250_consen 121 PTATTLPDGRVLI 133 (243)
T ss_pred ccceECCCCCEEE
Confidence 9998888999988
No 394
>PF13964 Kelch_6: Kelch motif
Probab=46.75 E-value=69 Score=20.07 Aligned_cols=30 Identities=17% Similarity=0.016 Sum_probs=19.7
Q ss_pred CCeEEEEEecCC-CCccceEEEEECCCCeEE
Q 039428 112 RNRLLVAFTDVL-GNKYSALAAYDLSTWKRL 141 (335)
Q Consensus 112 ~g~l~v~~~D~~-~~~~~~v~~~d~~~~~~~ 141 (335)
+++|||..+... ....+.+.+||+++++-.
T Consensus 11 ~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~ 41 (50)
T PF13964_consen 11 GGKIYVFGGYDNSGKYSNDVERYDPETNTWE 41 (50)
T ss_pred CCEEEEECCCCCCCCccccEEEEcCCCCcEE
Confidence 689999743322 111357999999987654
No 395
>PF15416 DUF4623: Domain of unknown function (DUF4623)
Probab=46.08 E-value=1.4e+02 Score=27.89 Aligned_cols=82 Identities=11% Similarity=0.103 Sum_probs=45.5
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCe--EEEEeec---CCCccCCCCCCceeECCCCc--EEEEeCCC
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWK--RLFLTQL---SGKSEEKSTADDIAVDAEGN--AYVTDVVS 174 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~--~~~~~~~---~~~~~~~~~p~~~~vd~~G~--lyV~d~~~ 174 (335)
-+.-|..-. +|++|+++-......+-.|+.|+.-+.+ ++..++. ++.+....--..+.+|.+|+ +|+.|...
T Consensus 184 f~yNmgAl~-nGH~Y~asLSG~~~SPLKiY~w~tPts~PevIa~inV~~I~gAg~RhGDn~S~nlD~nGnGyiFFgdnaa 262 (442)
T PF15416_consen 184 FSYNMGALV-NGHSYLASLSGGKASPLKIYYWETPTSAPEVIADINVGDIPGAGNRHGDNFSLNLDENGNGYIFFGDNAA 262 (442)
T ss_pred cccchhhhc-CCeEEEEeccCCCCCceEEEEecCCCCCceEEEeeeeccCcccccccCcceeEEeccCCceEEEecCCcc
Confidence 344555443 8999996532211112357777755544 3333332 22221111122467787765 88888888
Q ss_pred CeEEEEccCC
Q 039428 175 SKIWKVGVEG 184 (335)
Q Consensus 175 ~~I~~~d~~g 184 (335)
..|.|++-.+
T Consensus 263 t~ilR~~vsn 272 (442)
T PF15416_consen 263 TNILRFTVSN 272 (442)
T ss_pred ceEEEEEccC
Confidence 8999998764
No 396
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=44.82 E-value=2.6e+02 Score=25.91 Aligned_cols=155 Identities=14% Similarity=0.082 Sum_probs=85.0
Q ss_pred eeeEEcCCCCEEEEEecCCeEEEEECCCCC-CCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 52 ETAKWDDVGRRFLVSFLDGGVGQVLVPDEY-SPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 52 egia~d~~g~~~~~~~~~~~I~~~d~~~g~-~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
.+-||.+|+..+.++..++.|+.+...... + +....++... ...+||...+..++|.-+..|.. -
T Consensus 14 tchAwn~drt~iAv~~~~~evhiy~~~~~~~w-----~~~htls~Hd---~~vtgvdWap~snrIvtcs~drn------a 79 (361)
T KOG1523|consen 14 TCHAWNSDRTQIAVSPNNHEVHIYSMLGADLW-----EPAHTLSEHD---KIVTGVDWAPKSNRIVTCSHDRN------A 79 (361)
T ss_pred eeeeecCCCceEEeccCCceEEEEEecCCCCc-----eeceehhhhC---cceeEEeecCCCCceeEccCCCC------c
Confidence 466999999998888667777666532222 1 1001222222 35678888887778877655532 3
Q ss_pred EEEEC-CCCeEE---EEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccc
Q 039428 131 AAYDL-STWKRL---FLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFG 206 (335)
Q Consensus 131 ~~~d~-~~~~~~---~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~ 206 (335)
+++.. ++++-. ....++ .....+.-.|..|.|+..+....|-+.--+++.-. +-+....+| -...
T Consensus 80 yVw~~~~~~~WkptlvLlRiN------rAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdW-WVsKhikkP----irSt 148 (361)
T KOG1523|consen 80 YVWTQPSGGTWKPTLVLLRIN------RAATCVKWSPKENKFAVGSGARLISVCYYEQENDW-WVSKHIKKP----IRST 148 (361)
T ss_pred cccccCCCCeeccceeEEEec------cceeeEeecCcCceEEeccCccEEEEEEEecccce-ehhhhhCCc----cccc
Confidence 33444 333321 111221 12335777889999988877666655444332211 000112221 1123
Q ss_pred cCeEEEccCCeEEEEECCCCEEEEE
Q 039428 207 LNGIVYHPDGFLIVIHMCSGNLFKI 231 (335)
Q Consensus 207 p~Gia~~~dg~Lyvad~~~~~v~~~ 231 (335)
...+.+.|.+-|..+-+.+++..+|
T Consensus 149 v~sldWhpnnVLlaaGs~D~k~rVf 173 (361)
T KOG1523|consen 149 VTSLDWHPNNVLLAAGSTDGKCRVF 173 (361)
T ss_pred eeeeeccCCcceecccccCcceeEE
Confidence 4788888888777776666665555
No 397
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=43.47 E-value=3.8e+02 Score=27.50 Aligned_cols=168 Identities=10% Similarity=-0.006 Sum_probs=84.9
Q ss_pred CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC--eEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEE
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW--KRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIW 178 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~--~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~ 178 (335)
.+.+++...|..-.|.-+++|. .++.|.++.. --+-...+...+.......+.-..++++..++....|..+
T Consensus 268 DWV~sv~W~p~~~~LLSASaDk------smiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~h 341 (764)
T KOG1063|consen 268 DWVYSVWWHPEGLDLLSASADK------SMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFH 341 (764)
T ss_pred cceEEEEEccchhhheecccCc------ceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEE
Confidence 4567777776332666655654 4777777654 2222223322221134567788889999999999988888
Q ss_pred EEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEE
Q 039428 179 KVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLA 258 (335)
Q Consensus 179 ~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia 258 (335)
.+....+... -..|...+...+..+|+++|.|.-|.+-..+-.-..|.+-+.+.....+..+.-+. .--.-++
T Consensus 342 lWkt~d~~~w------~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG-yDl~c~~ 414 (764)
T KOG1063|consen 342 LWKTKDKTFW------TQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHG-YDLTCLS 414 (764)
T ss_pred EEeccCccce------eeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccccccc-ccceeee
Confidence 7762221111 11111223445689999999994333332222222233333321222233221010 0122344
Q ss_pred EcCCCcEEEEecCCCeEEEEEcC
Q 039428 259 LLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 259 ~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
+-+...-||++....-+||++.+
T Consensus 415 ~vn~~~~FVSgAdEKVlRvF~aP 437 (764)
T KOG1063|consen 415 FVNEDLQFVSGADEKVLRVFEAP 437 (764)
T ss_pred hccCCceeeecccceeeeeecCc
Confidence 44434567776532334555543
No 398
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=42.86 E-value=2.5e+02 Score=25.47 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=45.7
Q ss_pred EEeCCCCeEEEEEecCCCCccceEEEEECCCCe---EEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC
Q 039428 107 AVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWK---RLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE 183 (335)
Q Consensus 107 ~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~ 183 (335)
++. ++|++.++..|. .+.+.-.... .+....++ .++...-.-++..||+.+.+.-..+|.|..+|.-
T Consensus 4 ~~~-~~Gk~lAi~qd~-------~iEiRsa~Ddf~si~~kcqVp--kD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~ 73 (282)
T PF15492_consen 4 ALS-SDGKLLAILQDQ-------CIEIRSAKDDFSSIIGKCQVP--KDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLM 73 (282)
T ss_pred eec-CCCcEEEEEecc-------EEEEEeccCCchheeEEEecC--CCCCchheEEEECCCCcEEEEEcCCCeEEEEecc
Confidence 444 378888766654 3333322111 12222332 2224455679999999988877788999999999
Q ss_pred CcEEEEe
Q 039428 184 GQLLSII 190 (335)
Q Consensus 184 g~~~~~~ 190 (335)
|.....+
T Consensus 74 g~~lf~I 80 (282)
T PF15492_consen 74 GSELFVI 80 (282)
T ss_pred cceeEEc
Confidence 8766544
No 399
>PRK12690 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=42.45 E-value=1.4e+02 Score=26.33 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=9.4
Q ss_pred CeEEEccCCeEEE
Q 039428 208 NGIVYHPDGFLIV 220 (335)
Q Consensus 208 ~Gia~~~dg~Lyv 220 (335)
..+.+++||.++.
T Consensus 136 ~~~~I~~dG~i~~ 148 (238)
T PRK12690 136 RSVAVGADGTLSA 148 (238)
T ss_pred ceEEECCCCeEEE
Confidence 3678888887754
No 400
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=42.16 E-value=3.4e+02 Score=26.56 Aligned_cols=76 Identities=16% Similarity=0.205 Sum_probs=44.0
Q ss_pred ceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CCcEEEEeCC--C-----C
Q 039428 104 MGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EGNAYVTDVV--S-----S 175 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G~lyV~d~~--~-----~ 175 (335)
..+... +|+||+. .+. +.-+.+|+.+-+.+-..++.+.-......-.-.+|| +|++|--... . =
T Consensus 124 t~v~~~--~g~llAl-~E~-----g~p~~lDp~TLeT~g~~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~ 195 (486)
T PF03055_consen 124 TNVIPH--GGRLLAL-WEG-----GPPYELDPDTLETLGPFDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKL 195 (486)
T ss_dssp SEEEEE--TTEEEEE--TT-----SEEEEEETTTCEEEEEEEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEE
T ss_pred eeeEEE--CCEEEEE-EcC-----CCCEEechhHhhhcCcccccccccCcccccCceEcccCCcEEEEEEEeccCCCCcE
Confidence 344444 6899986 344 358899999887775555543211133344567887 5887765442 1 2
Q ss_pred eEEEEccCCcEE
Q 039428 176 KIWKVGVEGQLL 187 (335)
Q Consensus 176 ~I~~~d~~g~~~ 187 (335)
.+++++++|+.+
T Consensus 196 ~~~~~~~~g~~~ 207 (486)
T PF03055_consen 196 TVYEIDPDGKKI 207 (486)
T ss_dssp EEEEE-TTSEEE
T ss_pred EEEEEcCcccee
Confidence 488999999654
No 401
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=41.74 E-value=2.9e+02 Score=25.69 Aligned_cols=106 Identities=15% Similarity=0.088 Sum_probs=63.7
Q ss_pred CcEEE-EeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEE
Q 039428 165 GNAYV-TDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKL 242 (335)
Q Consensus 165 G~lyV-~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~ 242 (335)
|+-|+ +....|-|+++|+...... ..+. +.+...|-|.+.|+. +|.++-+.+..|...++.... -+-+
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~~----~~~~-----ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~-Cv~V 173 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQCS----KNYR-----GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDV-CVAV 173 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhhc----ccee-----ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCe-EEEE
Confidence 55333 3345688888887643221 1111 123458899999988 999999999988888888762 3333
Q ss_pred EeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 243 IELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 243 ~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
+..-+++ -...-.+.++.+|..+++..+..++.+.+.+
T Consensus 174 fGG~egH-rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 174 FGGVEGH-RDEVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred ecccccc-cCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 3211111 1123346666778866666655667666654
No 402
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=40.06 E-value=2.6e+02 Score=24.53 Aligned_cols=103 Identities=20% Similarity=0.261 Sum_probs=48.8
Q ss_pred CeEEEccCCeEEEEECC---CCEEEEEeCCCCc--eeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecC---CCeEEEEE
Q 039428 208 NGIVYHPDGFLIVIHMC---SGNLFKIDIRKEE--EEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNP---YPSARLVE 279 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad~~---~~~v~~~d~~~~~--~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~---~~~~~v~~ 279 (335)
..++..++|+|++.-.. ....+..-.++++ ...+...++. . ...+. +.-.++|+++++.+. ...+.+..
T Consensus 162 ~~~~~~~dG~l~~~~R~~~~~~~~~~~S~D~G~TWs~~~~~~~~~-~-~~~~~-~~~~~~g~~~~~~~~~~~r~~l~l~~ 238 (275)
T PF13088_consen 162 PSIVELPDGRLLAVFRTEGNDDIYISRSTDGGRTWSPPQPTNLPN-P-NSSIS-LVRLSDGRLLLVYNNPDGRSNLSLYV 238 (275)
T ss_dssp EEEEEETTSEEEEEEEECSSTEEEEEEESSTTSS-EEEEEEECSS-C-CEEEE-EEECTTSEEEEEEECSSTSEEEEEEE
T ss_pred eEEEECCCCcEEEEEEccCCCcEEEEEECCCCCcCCCceecccCc-c-cCCce-EEEcCCCCEEEEEECCCCCCceEEEE
Confidence 34556678977765543 2344444555543 1222222222 1 01111 112357787777331 23455555
Q ss_pred cCCC---cEEEEEeeeecCCCCCcceEEEEeCCeEEE
Q 039428 280 SSDG---WETASVVAKFNGPTHRVATAATVKDGRVYL 313 (335)
Q Consensus 280 ~~~~---~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV 313 (335)
+.++ |.....+..-......+|..+...+|+|||
T Consensus 239 S~D~g~tW~~~~~i~~~~~~~~~Y~~~~~~~dg~l~i 275 (275)
T PF13088_consen 239 SEDGGKTWSRPKTIDDGPNGDSGYPSLTQLPDGKLYI 275 (275)
T ss_dssp ECTTCEEEEEEEEEEEEE-CCEEEEEEEEEETTEEEE
T ss_pred EeCCCCcCCccEEEeCCCCCcEECCeeEEeCCCcCCC
Confidence 5554 544333332211235566655556899997
No 403
>PF05887 Trypan_PARP: Procyclic acidic repetitive protein (PARP); InterPro: IPR008882 This family consists of several Trypanosoma brucei procyclic acidic repetitive protein (PARP) like sequences. The procyclic acidic repetitive protein (parp) genes of T. brucei encode a small family of abundant surface proteins whose expression is restricted to the procyclic form of the parasite. They are found at two unlinked loci, parpA and parpB; transcription of both loci is developmentally regulated [].; GO: 0016020 membrane; PDB: 2X34_B 2X32_B.
Probab=39.31 E-value=9.9 Score=30.02 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHH
Q 039428 4 SLCFTKTLLFFFIISA 19 (335)
Q Consensus 4 ~~~~~~~~~~~~~~~~ 19 (335)
+|||+.+|||.+++++
T Consensus 5 ~l~~LavLL~~A~Lfa 20 (143)
T PF05887_consen 5 HLCLLAVLLFGAALFA 20 (143)
T ss_dssp ----------------
T ss_pred cccccccccccccccc
Confidence 6899999998866543
No 404
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=38.95 E-value=3.5e+02 Score=25.79 Aligned_cols=122 Identities=11% Similarity=0.075 Sum_probs=69.6
Q ss_pred CCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEE---EeecCCCccCCCCCCceeECCCCcEEEEeCCCCeE
Q 039428 101 NATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLF---LTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKI 177 (335)
Q Consensus 101 ~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I 177 (335)
++.+.|.++. +++.++..+| + ..+.+|..+--.... -+.+.+... .....-++|+-..+..++...-++|
T Consensus 57 GCiNAlqFS~-N~~~L~SGGD---D--~~~~~W~~de~~~~k~~KPI~~~~~~H-~SNIF~L~F~~~N~~~~SG~~~~~V 129 (609)
T KOG4227|consen 57 GCINALQFSH-NDRFLASGGD---D--MHGRVWNVDELMVRKTPKPIGVMEHPH-RSNIFSLEFDLENRFLYSGERWGTV 129 (609)
T ss_pred cccceeeecc-CCeEEeecCC---c--ceeeeechHHHHhhcCCCCceeccCcc-ccceEEEEEccCCeeEecCCCccee
Confidence 4678999985 6777774332 2 234455443110000 011111100 1333468888777766677777888
Q ss_pred EEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 178 WKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 178 ~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
.+.|...+..... +... .......|+..+|-.++++..+..++|..+|....
T Consensus 130 I~HDiEt~qsi~V----~~~~---~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 130 IKHDIETKQSIYV----ANEN---NNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDR 181 (609)
T ss_pred Eeeecccceeeee----eccc---CcccceeecccCCCCceEEEEecCceEEEEeccCC
Confidence 8888876654321 1110 01123667888886677777778888988888764
No 405
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=37.33 E-value=3.4e+02 Score=25.07 Aligned_cols=185 Identities=21% Similarity=0.151 Sum_probs=97.0
Q ss_pred EcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEEC
Q 039428 56 WDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDL 135 (335)
Q Consensus 56 ~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~ 135 (335)
|+-.|+..|++-++..+..+|..+-..| .+.- ....++ ...+.++++ .+.-|++ +.. ..+..+|.
T Consensus 134 v~vsGn~aYVadlddgfLivdvsdpssP--~lag--rya~~~---~d~~~v~IS--Gn~AYvA--~~d----~GL~ivDV 198 (370)
T COG5276 134 VYVSGNYAYVADLDDGFLIVDVSDPSSP--QLAG--RYALPG---GDTHDVAIS--GNYAYVA--WRD----GGLTIVDV 198 (370)
T ss_pred EEecCCEEEEeeccCcEEEEECCCCCCc--eeee--eeccCC---CCceeEEEe--cCeEEEE--EeC----CCeEEEEc
Confidence 3445788888865667777775443322 1110 111221 123577886 7889995 332 24888886
Q ss_pred CCC---eEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEE-EEecCCccccccccccccccCeE-
Q 039428 136 STW---KRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLL-SIIRSPLFTAKEWYKNVFGLNGI- 210 (335)
Q Consensus 136 ~~~---~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~-~~~~~~~~~~~~~~~~~~~p~Gi- 210 (335)
... .++-..+.. .....+.+. +.+.|+++... .+..+|.++... ++++. +.. .+|.++
T Consensus 199 Snp~sPvli~~~n~g------~g~~sv~vs-dnr~y~vvy~e-gvlivd~s~~ssp~~~gs--yet-------~~p~~~s 261 (370)
T COG5276 199 SNPHSPVLIGSYNTG------PGTYSVSVS-DNRAYLVVYDE-GVLIVDVSGPSSPTVFGS--YET-------SNPVSIS 261 (370)
T ss_pred cCCCCCeEEEEEecC------CceEEEEec-CCeeEEEEccc-ceEEEecCCCCCceEeec--ccc-------CCccccc
Confidence 532 222223321 123345554 34688887665 466777665432 22322 211 234444
Q ss_pred --EEccCCeEEEEECCCCEEEEEeCCCCce-e-EEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEcC
Q 039428 211 --VYHPDGFLIVIHMCSGNLFKIDIRKEEE-E-VKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVESS 281 (335)
Q Consensus 211 --a~~~dg~Lyvad~~~~~v~~~d~~~~~~-~-~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~~ 281 (335)
.++ +.+.|+++...+ +..+|...+.+ . ...+...| ....|+..- ++-+|+++. +...++...
T Consensus 262 ~v~Vs-~~~~Yvadga~g-l~~idisnp~spfl~ss~~t~g----~~a~gi~ay-~~y~yiadk--n~g~vV~~s 327 (370)
T COG5276 262 TVPVS-GEYAYVADGAKG-LPIIDISNPPSPFLSSSLDTAG----YQAAGIRAY-GNYNYIADK--NTGAVVDAS 327 (370)
T ss_pred ceecc-cceeeeeccccC-ceeEeccCCCCCchhccccCCC----ccccceEEe-cCeeEeccC--CceEEEeCC
Confidence 444 679999997665 55567666421 1 11233333 124677764 457888866 445555543
No 406
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=37.30 E-value=43 Score=31.19 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=18.3
Q ss_pred cCeEEEccCC---eEEEEECCCCEEEEEeCCCC
Q 039428 207 LNGIVYHPDG---FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 207 p~Gia~~~dg---~Lyvad~~~~~v~~~d~~~~ 236 (335)
|..+-.+.|| ++|+.|. .|.|||||+.+.
T Consensus 210 ~~~~D~d~DG~~D~vYaGDl-~GnlwR~dl~~~ 241 (335)
T PF05567_consen 210 PAVVDSDGDGYVDRVYAGDL-GGNLWRFDLSSA 241 (335)
T ss_dssp EEEE-TTSSSEE-EEEEEET-TSEEEEEE--TT
T ss_pred cEEEeccCCCeEEEEEEEcC-CCcEEEEECCCC
Confidence 3333334566 6899885 688999999864
No 407
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=36.47 E-value=4.5e+02 Score=26.23 Aligned_cols=130 Identities=14% Similarity=0.169 Sum_probs=73.9
Q ss_pred ceEEEeCCCCeEEEEEecCCC-----------------CccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECC-CC
Q 039428 104 MGIAVDRPRNRLLVAFTDVLG-----------------NKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDA-EG 165 (335)
Q Consensus 104 ~Gi~~d~~~g~l~v~~~D~~~-----------------~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~-~G 165 (335)
..+.++ .++||++...... .....|++|+.+.+++.......-+ ....|.-++|. +|
T Consensus 209 ~~vY~S--~~~LYia~~~~~~~~~~~~~~~~~~~~~~~~~~T~I~kf~~~~~~~~y~~sg~V~---G~llnqFsmdE~~G 283 (521)
T PF09826_consen 209 GNVYMS--ENNLYIASNRYYYEPYAMMRFEASAEPEESNESTTIYKFALDGGKIEYVGSGSVP---GYLLNQFSMDEYDG 283 (521)
T ss_pred CEEEEe--CCcEEEEEecccccccccchhccccccccCCCceEEEEEEccCCcEEEEEEEEEC---cEEcccccEeccCC
Confidence 456665 4788887543221 1136899999988877644433222 34567788887 57
Q ss_pred cEEEEeCC-----------CCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEE-EEECCCCEEEEEeC
Q 039428 166 NAYVTDVV-----------SSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLI-VIHMCSGNLFKIDI 233 (335)
Q Consensus 166 ~lyV~d~~-----------~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Ly-vad~~~~~v~~~d~ 233 (335)
.+-|+-+. .+.|+++|.+-+.+-.+. .+.+ .....+.-|.-| +.| ||=....-+++||+
T Consensus 284 ~LRvaTT~~~~~~~~~~~s~N~lyVLD~~L~~vG~l~--~la~------gE~IysvRF~Gd-~~Y~VTFrqvDPLfviDL 354 (521)
T PF09826_consen 284 YLRVATTSGNWWWDSEDTSSNNLYVLDEDLKIVGSLE--GLAP------GERIYSVRFMGD-RAYLVTFRQVDPLFVIDL 354 (521)
T ss_pred EEEEEEecCcccccCCCCceEEEEEECCCCcEeEEcc--ccCC------CceEEEEEEeCC-eEEEEEEeecCceEEEEC
Confidence 77776432 467778874433332221 1111 122445555533 444 55556688999999
Q ss_pred CCCc--eeEEEEeccC
Q 039428 234 RKEE--EEVKLIELRG 247 (335)
Q Consensus 234 ~~~~--~~~~~~~~~g 247 (335)
+..+ ..+..++++|
T Consensus 355 sdP~~P~vlGeLKIPG 370 (521)
T PF09826_consen 355 SDPANPKVLGELKIPG 370 (521)
T ss_pred CCCCCCceeeEEECcc
Confidence 8863 1333455555
No 408
>PRK13613 lipoprotein LpqB; Provisional
Probab=36.14 E-value=4.8e+02 Score=26.54 Aligned_cols=213 Identities=11% Similarity=0.025 Sum_probs=99.5
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.+..++++++++...+...+++.+.+.+..+..... .+...+++.. ....-.+|. +|.+|++ |..... .+
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~-~~~~~~~~~~-----~Lt~PS~d~-~g~vWtv--d~~~~~-~~ 433 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIG-VHSWGVTADG-----RLTSPSWDG-RGDLWVV--DRDPAD-PR 433 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccc-cccceeeccC-----cccCCcCcC-CCCEEEe--cCCCCC-ce
Confidence 466788888887655553334333332211110000 0000122222 223445675 6899995 432111 23
Q ss_pred EEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-c-EEEEeCC-CCeEE--EE--ccCCcEEEEecCCccccccccc
Q 039428 130 LAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-N-AYVTDVV-SSKIW--KV--GVEGQLLSIIRSPLFTAKEWYK 202 (335)
Q Consensus 130 v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~-lyV~d~~-~~~I~--~~--d~~g~~~~~~~~~~~~~~~~~~ 202 (335)
++++-..+++... ++... ........+.+.+|| + +.|.+.. .++|+ .+ +.+|. .. +..+.-.. +
T Consensus 434 vl~v~~~~G~~~~-V~~~~--l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~-~~-l~~~~~l~----~ 504 (599)
T PRK13613 434 LLWLLQGDGEPVE-VRTPE--LDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAV-VS-VEEFRSLA----P 504 (599)
T ss_pred EEEEEcCCCcEEE-eeccc--cCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCc-EE-eeccEEec----c
Confidence 4443333555432 22211 111246789999999 4 5555532 23333 22 33454 22 22211011 1
Q ss_pred cccccCeEEEccCCeEEE-EE--CCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCc-EEEEecCCCeEEEE
Q 039428 203 NVFGLNGIVYHPDGFLIV-IH--MCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTK-LVVAGNPYPSARLV 278 (335)
Q Consensus 203 ~~~~p~Gia~~~dg~Lyv-ad--~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~-l~va~~~~~~~~v~ 278 (335)
....+..++|..++.|.| +. .....++++.+++.. ...-.. + .+.....++...+-+ .|+++...+.++..
T Consensus 505 ~l~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~v~vdG~~--~~~~~~-~--~v~~~~~ia~~~~~~~~~v~~~~~~~v~~~ 579 (599)
T PRK13613 505 ELEDVTDMSWAGDSQLVVLGREEGGVQQARYVQVDGST--PPASAP-A--AVTGVESITASEDERLPLVAGTSEDGIVRL 579 (599)
T ss_pred CCCccceeEEcCCCEEEEEeccCCCCcceEEEecCCcC--cccccc-c--CCCCeeEEEecCCCCceEEEEecCCCeEEe
Confidence 233478999998889888 32 235689999998752 111111 1 123344455554433 66662212445434
Q ss_pred EcCCCcEE
Q 039428 279 ESSDGWET 286 (335)
Q Consensus 279 ~~~~~~~~ 286 (335)
.....|..
T Consensus 580 ~~g~~W~~ 587 (599)
T PRK13613 580 SSGLQWQT 587 (599)
T ss_pred cCCCcceE
Confidence 44455764
No 409
>PF12275 DUF3616: Protein of unknown function (DUF3616); InterPro: IPR022060 This family of proteins is found in bacteria. Proteins in this family are typically between 335 and 392 amino acids in length. There is a conserved GLRGPV sequence motif.
Probab=35.85 E-value=87 Score=29.15 Aligned_cols=67 Identities=16% Similarity=0.243 Sum_probs=33.9
Q ss_pred CceeECCCCcEEEEeCCCCeEEEEccCCcE-EEEec-CCccc------cccccccccccCeEEEccCCeEEEEECC
Q 039428 157 DDIAVDAEGNAYVTDVVSSKIWKVGVEGQL-LSIIR-SPLFT------AKEWYKNVFGLNGIVYHPDGFLIVIHMC 224 (335)
Q Consensus 157 ~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~-~~~~~-~~~~~------~~~~~~~~~~p~Gia~~~dg~Lyvad~~ 224 (335)
..+..-+++++||+.-....|.|+...... ...+. ...|. -|.......-..|+++ .+|+||++-+.
T Consensus 3 Sa~~~~~d~~l~va~DE~~~i~rL~~~~~~~~~~~~~~~~~~l~~~~~lp~~~~~e~DiEGla~-~~gyly~igSH 77 (330)
T PF12275_consen 3 SAAVQLPDGRLWVASDETANIERLTLDDAGGEDRFGDHASFPLADFFDLPGPKDKEIDIEGLAY-ADGYLYVIGSH 77 (330)
T ss_pred ccceEcCCCeEEEEecCCCCeeEEEecCCCcccccccccccccccccccCCCCCcccchhhhhc-cCCeEEEEccC
Confidence 346667788888875444444443332111 00111 11111 1111112344789999 58899998653
No 410
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=33.82 E-value=4.5e+02 Score=25.45 Aligned_cols=132 Identities=11% Similarity=0.109 Sum_probs=80.4
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-CcEEEEeCCCCeEEEEccCC--cEEEEecCCccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-GNAYVTDVVSSKIWKVGVEG--QLLSIIRSPLFTAKEWYKNV 204 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G~lyV~d~~~~~I~~~d~~g--~~~~~~~~~~~~~~~~~~~~ 204 (335)
..|..||.++++....... . ....+-+.+.+. ..+.++.++.++|...|-.- .....| .|.
T Consensus 266 ~TV~lWD~~~g~p~~s~~~--~---~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w---k~~-------- 329 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPKSSITH--H---GKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW---KFD-------- 329 (463)
T ss_pred ceEEEEEcCCCCcceehhh--c---CCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE---Eec--------
Confidence 4699999999877643321 1 234556788775 67888888888888887541 111111 011
Q ss_pred cccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEE
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVE 279 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~ 279 (335)
....-+++++.. +.+++.+.+|.|+-+|.+..+..+..+.... ....|+.+.+.- .+.++......+.+..
T Consensus 330 g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd----~~ISgl~~n~~~p~~l~t~s~d~~Vklw~ 402 (463)
T KOG0270|consen 330 GEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHD----DEISGLSVNIQTPGLLSTASTDKVVKLWK 402 (463)
T ss_pred cceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEecc----CCcceEEecCCCCcceeeccccceEEEEe
Confidence 125678888866 7888888999999999988632444443322 225678777653 3444433223344433
No 411
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=33.43 E-value=5.4e+02 Score=26.26 Aligned_cols=167 Identities=13% Similarity=0.118 Sum_probs=84.9
Q ss_pred eeeEEcCCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceE
Q 039428 52 ETAKWDDVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSAL 130 (335)
Q Consensus 52 egia~d~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v 130 (335)
-.+.|-| |...+++ ..+.++..||..+.+ .+.. .+. -+.. ...-.+++.+.+..+|++. ... +.+
T Consensus 104 fDl~wap-ge~~lVsasGDsT~r~Wdvk~s~----l~G~-~~~--~GH~-~SvkS~cf~~~n~~vF~tG--gRD---g~i 169 (720)
T KOG0321|consen 104 FDLKWAP-GESLLVSASGDSTIRPWDVKTSR----LVGG-RLN--LGHT-GSVKSECFMPTNPAVFCTG--GRD---GEI 169 (720)
T ss_pred EeeccCC-CceeEEEccCCceeeeeeeccce----eecc-eee--cccc-cccchhhhccCCCcceeec--cCC---CcE
Confidence 3667878 7777777 677899999865443 1111 011 1111 2445677777677788842 221 458
Q ss_pred EEEECCCCeE---E-E-----EeecC--CCccC---------------CCCCCceeECCCCcEEEE-eCCCCeEEEEccC
Q 039428 131 AAYDLSTWKR---L-F-----LTQLS--GKSEE---------------KSTADDIAVDAEGNAYVT-DVVSSKIWKVGVE 183 (335)
Q Consensus 131 ~~~d~~~~~~---~-~-----~~~~~--~~~~~---------------~~~p~~~~vd~~G~lyV~-d~~~~~I~~~d~~ 183 (335)
+.||..-... . + ...-. .+.++ +.....+.| .|....++ ....+.|-++|..
T Consensus 170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~f-kDe~tlaSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLF-KDESTLASAGAADSTIKVWDLR 248 (720)
T ss_pred EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEE-eccceeeeccCCCcceEEEeec
Confidence 8888653210 0 0 00000 01000 011112222 22223333 2336777788865
Q ss_pred CcEEEEec----CCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCCC
Q 039428 184 GQLLSIIR----SPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 184 g~~~~~~~----~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~ 236 (335)
......-+ ...+.. ......+...+++|..| +|| +++.++.||-+++.+.
T Consensus 249 k~~~~~r~ep~~~~~~~t--~skrs~G~~nL~lDssGt~L~-AsCtD~sIy~ynm~s~ 303 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPT--HSKRSVGQVNLILDSSGTYLF-ASCTDNSIYFYNMRSL 303 (720)
T ss_pred ccccccccCCCcccCccC--cccceeeeEEEEecCCCCeEE-EEecCCcEEEEecccc
Confidence 33221100 001111 12234567889999999 666 4555899999999875
No 412
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=33.30 E-value=4.8e+02 Score=25.63 Aligned_cols=188 Identities=15% Similarity=0.160 Sum_probs=91.4
Q ss_pred CCeEEEEEecCCCCccce--EEEEECCCCeEEEEe-ecCCCccCCCCCCceeECCCCcEEEEeCCC------CeEEEEcc
Q 039428 112 RNRLLVAFTDVLGNKYSA--LAAYDLSTWKRLFLT-QLSGKSEEKSTADDIAVDAEGNAYVTDVVS------SKIWKVGV 182 (335)
Q Consensus 112 ~g~l~v~~~D~~~~~~~~--v~~~d~~~~~~~~~~-~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~------~~I~~~d~ 182 (335)
++.+||.-.....+.... |+++|..+....... ....+ .+...-.-.+++ ..+|+-.... ..|+.+|.
T Consensus 70 ~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p-~~r~g~~~~~~~--~~l~lfGG~~~~~~~~~~l~~~d~ 146 (482)
T KOG0379|consen 70 GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEP-SPRYGHSLSAVG--DKLYLFGGTDKKYRNLNELHSLDL 146 (482)
T ss_pred CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCC-CcccceeEEEEC--CeEEEEccccCCCCChhheEeccC
Confidence 577888533222222234 999998764332111 11111 001111122332 4577754333 38899998
Q ss_pred CCcEEEEecCCccccccccccccccCeEEEccCCeEEEEEC------CCCEEEEEeCCCCceeEEEEeccCCcCC-CCCC
Q 039428 183 EGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHM------CSGNLFKIDIRKEEEEVKLIELRGGSSL-SLGD 255 (335)
Q Consensus 183 ~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~------~~~~v~~~d~~~~~~~~~~~~~~g~~~~-~~pd 255 (335)
....-..+.. ... .|....-+.++.. +.+|||--. ..+.++.+|+... ....+...|..+- ..-.
T Consensus 147 ~t~~W~~l~~--~~~---~P~~r~~Hs~~~~-g~~l~vfGG~~~~~~~~ndl~i~d~~~~--~W~~~~~~g~~P~pR~gH 218 (482)
T KOG0379|consen 147 STRTWSLLSP--TGD---PPPPRAGHSATVV-GTKLVVFGGIGGTGDSLNDLHIYDLETS--TWSELDTQGEAPSPRYGH 218 (482)
T ss_pred CCCcEEEecC--cCC---CCCCcccceEEEE-CCEEEEECCccCcccceeeeeeeccccc--cceecccCCCCCCCCCCc
Confidence 7655443211 111 1112234555555 457777422 2467999999887 5555555443311 1234
Q ss_pred eEEEcCCCcEEEEec------CCCeEEEEEcCCC-cEEEEEeeeecCCCCCcceEEEEeCCeEEE
Q 039428 256 GLALLSPTKLVVAGN------PYPSARLVESSDG-WETASVVAKFNGPTHRVATAATVKDGRVYL 313 (335)
Q Consensus 256 Gia~d~~g~l~va~~------~~~~~~v~~~~~~-~~~~~~~~~~~~p~~~~Pt~va~~~g~lyV 313 (335)
.+++.. +++|+... ..+.++.++.... |+.....+.. |..+.-.+.+..+.++++
T Consensus 219 ~~~~~~-~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~--p~~R~~h~~~~~~~~~~l 280 (482)
T KOG0379|consen 219 AMVVVG-NKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDL--PSPRSGHSLTVSGDHLLL 280 (482)
T ss_pred eEEEEC-CeEEEEeccccCCceecceEeeecccceeeeccccCCC--CCCcceeeeEEECCEEEE
Confidence 566654 46666622 1245667776553 5522222333 332332344455777776
No 413
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=33.20 E-value=6.4e+02 Score=27.04 Aligned_cols=28 Identities=7% Similarity=-0.031 Sum_probs=18.0
Q ss_pred eeeeEEcCCCCEEEE--EecC----CeEEEEECC
Q 039428 51 CETAKWDDVGRRFLV--SFLD----GGVGQVLVP 78 (335)
Q Consensus 51 pegia~d~~g~~~~~--~~~~----~~I~~~d~~ 78 (335)
--.++|+|+|+.+.. +... ..||+-+..
T Consensus 352 i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~ 385 (912)
T TIGR02171 352 VYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLN 385 (912)
T ss_pred eecCcCCCCCCEEEEEEeecCCCCCceEEEEehh
Confidence 357899999985544 3322 358777643
No 414
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=32.99 E-value=3.8e+02 Score=24.35 Aligned_cols=110 Identities=18% Similarity=0.158 Sum_probs=57.3
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCe-EEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCC-eEEE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWK-RLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSS-KIWK 179 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~-~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~-~I~~ 179 (335)
.+..|..- +++|.++.. ..|..|+....+ +........ ......+.+-. ..++|+|...+ .+++
T Consensus 90 ~V~ai~~~--~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~~----~~~i~sl~~~~-~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 90 PVTAICSF--NGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYDS----PFYITSLSVFK-NYILVGDAMKSVSLLR 155 (321)
T ss_dssp -EEEEEEE--TTEEEEEET-------TEEEEEEEETTSSEEEEEEE-B----SSSEEEEEEET-TEEEEEESSSSEEEEE
T ss_pred cceEhhhh--CCEEEEeec-------CEEEEEEccCcccchhhheecc----eEEEEEEeccc-cEEEEEEcccCEEEEE
Confidence 56777766 677777532 357777776665 553333211 23455555543 37999998654 5567
Q ss_pred EccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCC-EEEEEeC
Q 039428 180 VGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSG-NLFKIDI 233 (335)
Q Consensus 180 ~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~-~v~~~d~ 233 (335)
++.++.....+... +. ......+.+-.|+ .++++|...+ .+++++.
T Consensus 156 ~~~~~~~l~~va~d-~~-------~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 156 YDEENNKLILVARD-YQ-------PRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EETTTE-EEEEEEE-SS--------BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred EEccCCEEEEEEec-CC-------CccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 78876644433221 11 1123344444343 6777775544 2344443
No 415
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=32.56 E-value=4.2e+02 Score=24.74 Aligned_cols=106 Identities=11% Similarity=0.146 Sum_probs=60.6
Q ss_pred CCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCC
Q 039428 60 GRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTW 138 (335)
Q Consensus 60 g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~ 138 (335)
++-|.+. ...|-|.++|...++. .. ... .. |+..+.|.+.|.+-+|.++.. . + ..|..|+.++.
T Consensus 104 ~~p~la~~G~~GvIrVid~~~~~~----~~--~~~-gh---G~sINeik~~p~~~qlvls~S--k-D--~svRlwnI~~~ 168 (385)
T KOG1034|consen 104 GNPFLAAGGYLGVIRVIDVVSGQC----SK--NYR-GH---GGSINEIKFHPDRPQLVLSAS--K-D--HSVRLWNIQTD 168 (385)
T ss_pred CCeeEEeecceeEEEEEecchhhh----cc--cee-cc---CccchhhhcCCCCCcEEEEec--C-C--ceEEEEeccCC
Confidence 4555554 5557788888643431 11 121 22 246788899886666666422 1 1 46999999988
Q ss_pred eEEEEee-cCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC
Q 039428 139 KRLFLTQ-LSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE 183 (335)
Q Consensus 139 ~~~~~~~-~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~ 183 (335)
.-+.... +.+ . -...-.+-++.+|.-.++..+.+.|..++.+
T Consensus 169 ~Cv~VfGG~eg--H-rdeVLSvD~~~~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 169 VCVAVFGGVEG--H-RDEVLSVDFSLDGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred eEEEEeccccc--c-cCcEEEEEEcCCCCeeeccCCcceEEEEecC
Confidence 6553322 211 1 2233346667888866666667777666655
No 416
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.38 E-value=3.8e+02 Score=23.95 Aligned_cols=115 Identities=13% Similarity=0.187 Sum_probs=64.8
Q ss_pred eEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeE-EEEeecCCCccCCCCCCceeEC-CC-CcEEEEeCCCCeEEEEc
Q 039428 105 GIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKR-LFLTQLSGKSEEKSTADDIAVD-AE-GNAYVTDVVSSKIWKVG 181 (335)
Q Consensus 105 Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~~~~p~~~~vd-~~-G~lyV~d~~~~~I~~~d 181 (335)
.+..|--+.+|--|+.|. .|.+|..+.+.. .....+.+. ......++.. |. |++..+.++.+.|..+.
T Consensus 16 da~lDyygkrlATcsSD~------tVkIf~v~~n~~s~ll~~L~Gh---~GPVwqv~wahPk~G~iLAScsYDgkVIiWk 86 (299)
T KOG1332|consen 16 DAQLDYYGKRLATCSSDG------TVKIFEVRNNGQSKLLAELTGH---SGPVWKVAWAHPKFGTILASCSYDGKVIIWK 86 (299)
T ss_pred HhhhhhhcceeeeecCCc------cEEEEEEcCCCCceeeeEecCC---CCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence 333443245555544443 366666553321 222344321 1233456654 44 99999999999988887
Q ss_pred cCCc-EEEEecCCccccccccccccccCeEEEccCC--eEEEEECCCCEEEEEeCCCC
Q 039428 182 VEGQ-LLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG--FLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 182 ~~g~-~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg--~Lyvad~~~~~v~~~d~~~~ 236 (335)
-.+. ..+.. .+. ......|.|++.|.+ .++.+-+.+|.|.+++.+..
T Consensus 87 e~~g~w~k~~---e~~-----~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~ 136 (299)
T KOG1332|consen 87 EENGRWTKAY---EHA-----AHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS 136 (299)
T ss_pred cCCCchhhhh---hhh-----hhcccceeecccccccceEEEEeeCCCcEEEEEEcCC
Confidence 6543 22110 111 122458999999975 56677777777766666554
No 417
>PRK12694 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=31.25 E-value=3e+02 Score=24.54 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=11.3
Q ss_pred CCCCCceeECCCCcEEE
Q 039428 153 KSTADDIAVDAEGNAYV 169 (335)
Q Consensus 153 ~~~p~~~~vd~~G~lyV 169 (335)
-..|.|++++.+|-+-|
T Consensus 89 Tg~~lD~AI~G~GfF~V 105 (260)
T PRK12694 89 TGNSKDVAINGQGFFQV 105 (260)
T ss_pred CCCcceEEEcCCcEEEE
Confidence 35778888877774333
No 418
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=31.18 E-value=5.5e+02 Score=25.71 Aligned_cols=176 Identities=18% Similarity=0.129 Sum_probs=93.4
Q ss_pred EEEEecCCeEEEEECCCCCCCcceeeeeEEee-cCCcCCCCcceEEEeCCCCeEEEE-EecCCCCccceEEEEECCCCeE
Q 039428 63 FLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVK-EDDVVGNATMGIAVDRPRNRLLVA-FTDVLGNKYSALAAYDLSTWKR 140 (335)
Q Consensus 63 ~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~-~~~~~~~~p~Gi~~d~~~g~l~v~-~~D~~~~~~~~v~~~d~~~~~~ 140 (335)
++.......|..+|..++. . ... ..+.. ....++++.. .+.+++. ..| ..+.+||..+|+-
T Consensus 221 ~~~~s~~~tl~~~~~~~~~-----~----i~~~l~GH~-g~V~~l~~~~-~~~~lvsgS~D------~t~rvWd~~sg~C 283 (537)
T KOG0274|consen 221 FKSGSDDSTLHLWDLNNGY-----L----ILTRLVGHF-GGVWGLAFPS-GGDKLVSGSTD------KTERVWDCSTGEC 283 (537)
T ss_pred EEecCCCceeEEeecccce-----E----EEeeccCCC-CCceeEEEec-CCCEEEEEecC------CcEEeEecCCCcE
Confidence 3334567788888865443 1 111 11211 3578999985 5556663 223 2599999988876
Q ss_pred EEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccC-CcEEEEecCCccccccccccccccCeEEEccCCeEE
Q 039428 141 LFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVE-GQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLI 219 (335)
Q Consensus 141 ~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~-g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Ly 219 (335)
.....+ ..-..-.++-.+...++.+....|.+++-. +..+.+++. .. ...+.+.++ +.+.
T Consensus 284 ~~~l~g-------h~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~--h~--------~~V~~v~~~--~~~l 344 (537)
T KOG0274|consen 284 THSLQG-------HTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRG--HT--------GPVNCVQLD--EPLL 344 (537)
T ss_pred EEEecC-------CCceEEEEEccCceEeeccCCceEEEEeccCcceEEEecc--cc--------ccEEEEEec--CCEE
Confidence 543322 111123344445566666677777777765 455544431 11 125566665 6566
Q ss_pred EEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCCeEEEEEc
Q 039428 220 VIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 220 vad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~~~~v~~~ 280 (335)
|+-+.++.|.+.++...+ .+..+. | + -.....+.++.. ...+.+.....+++.+.
T Consensus 345 vsgs~d~~v~VW~~~~~~-cl~sl~--g-H-~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl 399 (537)
T KOG0274|consen 345 VSGSYDGTVKVWDPRTGK-CLKSLS--G-H-TGRVYSLIVDSE-NRLLSGSLDTTIKVWDL 399 (537)
T ss_pred EEEecCceEEEEEhhhce-eeeeec--C-C-cceEEEEEecCc-ceEEeeeeccceEeecC
Confidence 666677788888887653 333332 2 2 122455666554 33333222244555544
No 419
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=30.64 E-value=1.5e+02 Score=22.60 Aligned_cols=55 Identities=22% Similarity=0.350 Sum_probs=30.9
Q ss_pred ceeECCCCcEEEEeCCCCeEEEE-ccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEE
Q 039428 158 DIAVDAEGNAYVTDVVSSKIWKV-GVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFK 230 (335)
Q Consensus 158 ~~~vd~~G~lyV~d~~~~~I~~~-d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~ 230 (335)
-+.+..||+|.+.+..+..||.- ...+.. ....-+.+..+|+|.+-+.....||.
T Consensus 22 ~L~l~~dGnLvl~~~~~~~iWss~~t~~~~------------------~~~~~~~L~~~GNlvl~d~~~~~lW~ 77 (114)
T PF01453_consen 22 TLILQSDGNLVLYDSNGSVIWSSNNTSGRG------------------NSGCYLVLQDDGNLVLYDSSGNVLWQ 77 (114)
T ss_dssp EEEEETTSEEEEEETTTEEEEE--S-TTSS-------------------SSEEEEEETTSEEEEEETTSEEEEE
T ss_pred cceECCCCeEEEEcCCCCEEEEecccCCcc------------------ccCeEEEEeCCCCEEEEeecceEEEe
Confidence 36677788888877664444443 111110 01345677778888877764444543
No 420
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=30.35 E-value=1.9e+02 Score=26.92 Aligned_cols=56 Identities=16% Similarity=0.258 Sum_probs=41.2
Q ss_pred cccCeEEEccCC-eEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEE
Q 039428 205 FGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLV 266 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~ 266 (335)
.+...+.++||| ++..+....-+|.+..+.+. ....++.+- .+..|+++.++|+..
T Consensus 92 agls~~~WSPdgrhiL~tseF~lriTVWSL~t~--~~~~~~~pK----~~~kg~~f~~dg~f~ 148 (447)
T KOG4497|consen 92 AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQ--KGYLLPHPK----TNVKGYAFHPDGQFC 148 (447)
T ss_pred CcceeeeECCCcceEeeeecceeEEEEEEeccc--eeEEecccc----cCceeEEECCCCcee
Confidence 346778999999 88888888888888888876 444454332 235799999998743
No 421
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=30.31 E-value=82 Score=18.92 Aligned_cols=20 Identities=45% Similarity=0.642 Sum_probs=14.5
Q ss_pred chhhHHHHHHHHHHHHhhhh
Q 039428 4 SLCFTKTLLFFFIISAIPIA 23 (335)
Q Consensus 4 ~~~~~~~~~~~~~~~~~p~~ 23 (335)
-+|++.++||+.++..+-+-
T Consensus 10 ylc~l~~llflv~imliif~ 29 (43)
T PF11395_consen 10 YLCFLSFLLFLVIIMLIIFW 29 (43)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 47999998888777665443
No 422
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=29.73 E-value=4.6e+02 Score=24.31 Aligned_cols=201 Identities=13% Similarity=0.111 Sum_probs=102.6
Q ss_pred eeeeEEcCCCCEEEEEecCC-eEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCC--CCcc
Q 039428 51 CETAKWDDVGRRFLVSFLDG-GVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVL--GNKY 127 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~-~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~--~~~~ 127 (335)
+-+++|..|-..|.+...+| +||-.||- ++. .++... ..++ ...-|-+ +-++.+..+... ....
T Consensus 8 ~lsvs~NQD~ScFava~~~Gfriyn~~P~-ke~-----~~r~~~-~~G~---~~veMLf---R~N~laLVGGg~~pky~p 74 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTGFRIYNCDPF-KES-----ASRQFI-DGGF---KIVEMLF---RSNYLALVGGGSRPKYPP 74 (346)
T ss_pred eeEEEEccCCceEEEEecCceEEEecCch-hhh-----hhhccc-cCch---hhhhHhh---hhceEEEecCCCCCCCCC
Confidence 34588888888888875555 79999853 331 111121 1111 1111111 122222222211 1224
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCC--cEEEEecCCcccccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEG--QLLSIIRSPLFTAKEWYKNVF 205 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g--~~~~~~~~~~~~~~~~~~~~~ 205 (335)
+.|++||-.-...+....+. ...-++.++++- +.|.- .++|++++-.. +....++ +..
T Consensus 75 NkviIWDD~k~~~i~el~f~------~~I~~V~l~r~r-iVvvl--~~~I~VytF~~n~k~l~~~e-----------t~~ 134 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFN------SEIKAVKLRRDR-IVVVL--ENKIYVYTFPDNPKLLHVIE-----------TRS 134 (346)
T ss_pred ceEEEEecccCcEEEEEEec------cceeeEEEcCCe-EEEEe--cCeEEEEEcCCChhheeeee-----------ccc
Confidence 67999994333332222221 223457776654 55543 35677766432 2332221 345
Q ss_pred ccCeEEEccC--C-eEEE-EECCCCEEEEEeCCCCce-eEEEEeccCCcCCCCCCeEEEcCCCcEEEEecCCC-eEEEEE
Q 039428 206 GLNGIVYHPD--G-FLIV-IHMCSGNLFKIDIRKEEE-EVKLIELRGGSSLSLGDGLALLSPTKLVVAGNPYP-SARLVE 279 (335)
Q Consensus 206 ~p~Gia~~~d--g-~Lyv-ad~~~~~v~~~d~~~~~~-~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~~~~-~~~v~~ 279 (335)
+|+|++...- + .+++ -....|+|...|+...+. ....+.... ..---|++.-+|.+..+....+ =||+++
T Consensus 135 NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~----s~Iacv~Ln~~Gt~vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 135 NPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHD----SDIACVALNLQGTLVATASTKGTLIRIFD 210 (346)
T ss_pred CCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEccc----CceeEEEEcCCccEEEEeccCcEEEEEEE
Confidence 6999876542 2 3333 333468999999887631 124454322 2245788888998887754223 367777
Q ss_pred cCCCcEEEE
Q 039428 280 SSDGWETAS 288 (335)
Q Consensus 280 ~~~~~~~~~ 288 (335)
..+|....|
T Consensus 211 t~~g~~l~E 219 (346)
T KOG2111|consen 211 TEDGTLLQE 219 (346)
T ss_pred cCCCcEeee
Confidence 766644333
No 423
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=28.93 E-value=5.3e+02 Score=24.81 Aligned_cols=118 Identities=11% Similarity=0.113 Sum_probs=73.8
Q ss_pred CcceeeeEEcCCCCEEEEE-ecCCeEEEEECCC-CCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCC
Q 039428 48 SFLCETAKWDDVGRRFLVS-FLDGGVGQVLVPD-EYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGN 125 (335)
Q Consensus 48 ~~~pegia~d~~g~~~~~~-~~~~~I~~~d~~~-g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~ 125 (335)
...-|.++|++...-+|.+ ..++.+..+|... ...+ . .. .... ....+.++++|-++.|+++ ++..
T Consensus 227 ~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~----~--~~--~~ah-~~~vn~~~fnp~~~~ilAT-~S~D-- 294 (422)
T KOG0264|consen 227 EDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKP----S--HS--VKAH-SAEVNCVAFNPFNEFILAT-GSAD-- 294 (422)
T ss_pred CcceehhhccccchhhheeecCCCeEEEEEcCCCCCCC----c--cc--cccc-CCceeEEEeCCCCCceEEe-ccCC--
Confidence 3356889999988878888 7788999998542 1111 0 01 1111 1345789999877767664 3222
Q ss_pred ccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCCC-cEEEEeCCCCeEEEEccC
Q 039428 126 KYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAEG-NAYVTDVVSSKIWKVGVE 183 (335)
Q Consensus 126 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~G-~lyV~d~~~~~I~~~d~~ 183 (335)
..|..||++.-... ...+.+. ......+..+|.- ++..+....+++.++|..
T Consensus 295 --~tV~LwDlRnL~~~-lh~~e~H---~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 295 --KTVALWDLRNLNKP-LHTFEGH---EDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred --CcEEEeechhcccC-ceeccCC---CcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 36999998753221 1122221 2344568888874 688877778899998875
No 424
>PRK12689 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=28.09 E-value=3.3e+02 Score=24.21 Aligned_cols=17 Identities=24% Similarity=0.308 Sum_probs=10.8
Q ss_pred CCCCCceeECCCCcEEE
Q 039428 153 KSTADDIAVDAEGNAYV 169 (335)
Q Consensus 153 ~~~p~~~~vd~~G~lyV 169 (335)
-..|.|+++..+|-+-|
T Consensus 81 Tg~~lDlAI~G~GFF~V 97 (253)
T PRK12689 81 TKNPLDVAIDGDAFLAV 97 (253)
T ss_pred CCCceeEEECCCcEEEE
Confidence 35677888877774333
No 425
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=26.16 E-value=5e+02 Score=27.75 Aligned_cols=89 Identities=9% Similarity=0.132 Sum_probs=45.6
Q ss_pred EEEEeCCCCeEEEEccCCcEEEEe--cCCccccccccccccccCeEEEccCC-eEEE-EECC----CCEEEEEeCCCCce
Q 039428 167 AYVTDVVSSKIWKVGVEGQLLSII--RSPLFTAKEWYKNVFGLNGIVYHPDG-FLIV-IHMC----SGNLFKIDIRKEEE 238 (335)
Q Consensus 167 lyV~d~~~~~I~~~d~~g~~~~~~--~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyv-ad~~----~~~v~~~d~~~~~~ 238 (335)
+||++ .+++|...|.+|...+.+ .+.. -.-.-+++||| +|-+ +... .-.||+-++.....
T Consensus 322 Afv~~-~~~~L~~~D~dG~n~~~ve~~~~~-----------~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~ 389 (912)
T TIGR02171 322 AFRND-VTGNLAYIDYTKGASRAVEIEDTI-----------SVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGS 389 (912)
T ss_pred EEEEc-CCCeEEEEecCCCCceEEEecCCC-----------ceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCC
Confidence 55555 335888888887544432 2111 02233788999 5544 3222 34699988887532
Q ss_pred eEEEEeccCCcCCCCCCeEEEcCCC---cEEEEecC
Q 039428 239 EVKLIELRGGSSLSLGDGLALLSPT---KLVVAGNP 271 (335)
Q Consensus 239 ~~~~~~~~g~~~~~~pdGia~d~~g---~l~va~~~ 271 (335)
.+..+++.. -+.|.==. ..+| -+||++.+
T Consensus 390 ~~vkl~ve~---aaiprwrv-~e~gdt~ivyv~~a~ 421 (912)
T TIGR02171 390 GLVKLPVEN---AAIPRWRV-LENGDTVIVYVSDAS 421 (912)
T ss_pred CceEeeccc---ccccceEe-cCCCCeEEEEEcCCC
Confidence 223333332 23454333 3333 26777543
No 426
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=26.06 E-value=4.3e+02 Score=26.54 Aligned_cols=61 Identities=18% Similarity=0.223 Sum_probs=41.3
Q ss_pred cccCeEEEccCC-eEEEEECC--CCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEEec
Q 039428 205 FGLNGIVYHPDG-FLIVIHMC--SGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVAGN 270 (335)
Q Consensus 205 ~~p~Gia~~~dg-~Lyvad~~--~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va~~ 270 (335)
...|.+-++|.| .+.++.-. .+.+.=+|.+-. ..+...... + ....-+..||.|++++++.
T Consensus 493 ~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a--~~k~~~~~e-h--~~at~veWDPtGRYvvT~s 556 (698)
T KOG2314|consen 493 KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA--DLKDTASPE-H--FAATEVEWDPTGRYVVTSS 556 (698)
T ss_pred cccceEEEcCCCcEEEEEEecccccceEEEecchh--hhhhccCcc-c--cccccceECCCCCEEEEee
Confidence 458999999999 77776654 567787887742 222222211 2 2356789999999888865
No 427
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=25.54 E-value=1.1e+02 Score=15.82 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=18.4
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEE
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQV 75 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~ 75 (335)
...++.|.++++.++....++.+..+
T Consensus 14 ~i~~~~~~~~~~~~~~~~~d~~~~~~ 39 (40)
T smart00320 14 PVTSVAFSPDGKYLASASDDGTIKLW 39 (40)
T ss_pred ceeEEEECCCCCEEEEecCCCeEEEc
Confidence 35678888887766666667777665
No 428
>PRK12817 flgG flagellar basal body rod protein FlgG; Reviewed
Probab=24.83 E-value=4.4e+02 Score=23.45 Aligned_cols=15 Identities=27% Similarity=0.304 Sum_probs=10.3
Q ss_pred CeEEEccCCeEEEEE
Q 039428 208 NGIVYHPDGFLIVIH 222 (335)
Q Consensus 208 ~Gia~~~dg~Lyvad 222 (335)
..+.+++||.+++.+
T Consensus 152 ~~~~i~~dG~i~~~~ 166 (260)
T PRK12817 152 NNFTVDEDGGISVKN 166 (260)
T ss_pred CceEECCCCeEEEec
Confidence 467888888776533
No 429
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=24.57 E-value=7.2e+02 Score=24.89 Aligned_cols=156 Identities=13% Similarity=0.044 Sum_probs=79.9
Q ss_pred cceeeeEEc-CCCCEEEEE-ecCCeEEEEECCCCCCCcceeeeeEEeecCCcCC-CCc----ceEEEeCCCCeEEEEEec
Q 039428 49 FLCETAKWD-DVGRRFLVS-FLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVG-NAT----MGIAVDRPRNRLLVAFTD 121 (335)
Q Consensus 49 ~~pegia~d-~~g~~~~~~-~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~-~~p----~Gi~~d~~~g~l~v~~~D 121 (335)
+-|+-+-.+ .+.+++|.+ ...+.+|..|...|+ |+++ |-......- -.| .-| . +.+.|.- .++
T Consensus 467 idp~K~mlh~~dssli~~dg~~~~kLykmDIErGk----vvee--W~~~ddvvVqy~p~~kf~qm--t-~eqtlvG-lS~ 536 (776)
T COG5167 467 IDPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGK----VVEE--WDLKDDVVVQYNPYFKFQQM--T-DEQTLVG-LSD 536 (776)
T ss_pred CChhhceeecCCcceEEecCCCcccceeeecccce----eeeE--eecCCcceeecCCchhHHhc--C-ccceEEe-ecc
Confidence 356665554 446677777 556789999976665 4554 432211100 000 111 1 1344432 233
Q ss_pred CCCCccceEEEEECCC--CeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCcccccc
Q 039428 122 VLGNKYSALAAYDLST--WKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKE 199 (335)
Q Consensus 122 ~~~~~~~~v~~~d~~~--~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~ 199 (335)
..|+++||+- +++. ......-.. .+..+.+.....|.+-++ +..|-|..+|.=|.....+- |.
T Consensus 537 ------~svFrIDPR~~gNKi~-v~esKdY~t-Kn~Fss~~tTesGyIa~a-s~kGDirLyDRig~rAKtal-P~----- 601 (776)
T COG5167 537 ------YSVFRIDPRARGNKIK-VVESKDYKT-KNKFSSGMTTESGYIAAA-SRKGDIRLYDRIGKRAKTAL-PG----- 601 (776)
T ss_pred ------cceEEecccccCCcee-eeeehhccc-cccccccccccCceEEEe-cCCCceeeehhhcchhhhcC-cc-----
Confidence 3599999963 2332 122211111 333444555567866665 66788888887665433110 11
Q ss_pred ccccccccCeEEEccCC-eEEEEECCCCEEEEEeCC
Q 039428 200 WYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIR 234 (335)
Q Consensus 200 ~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~ 234 (335)
-+...-+|.++.+| +++ +.+ .+.|.-+|+.
T Consensus 602 ---lG~aIk~idvta~Gk~il-aTC-k~yllL~d~~ 632 (776)
T COG5167 602 ---LGDAIKHIDVTANGKHIL-ATC-KNYLLLTDVP 632 (776)
T ss_pred ---cccceeeeEeecCCcEEE-Eee-cceEEEEecc
Confidence 12236789999999 554 333 3345555543
No 430
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=23.89 E-value=3.5e+02 Score=27.77 Aligned_cols=101 Identities=10% Similarity=-0.037 Sum_probs=53.0
Q ss_pred CCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEE
Q 039428 162 DAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVK 241 (335)
Q Consensus 162 d~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~ 241 (335)
|..+....-.+..|.+|.++..++..+.....+ ......-+.++++.++.++-+.+++|.++-.+..+....
T Consensus 42 dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~--------~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 42 DATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEG--------ATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ecCCceEEEecccceEEEEecCchhhhcccccC--------ccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 333433333355667777777666544322211 011234456777778888888999999888776431222
Q ss_pred EEeccCCc-CCCCCCeEEEcCCC-cEEEEec
Q 039428 242 LIELRGGS-SLSLGDGLALLSPT-KLVVAGN 270 (335)
Q Consensus 242 ~~~~~g~~-~~~~pdGia~d~~g-~l~va~~ 270 (335)
.+-.+.+. .-.....+.+++++ ++|..+.
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~ 144 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDS 144 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCC
Confidence 22112211 01224566667776 4665543
No 431
>TIGR02488 flgG_G_neg flagellar basal-body rod protein FlgG, Gram-negative bacteria. This family consists of the FlgG protein of the flagellar apparatus in the Proteobacteria and spirochetes.
Probab=23.57 E-value=4.2e+02 Score=23.53 Aligned_cols=17 Identities=29% Similarity=0.382 Sum_probs=11.0
Q ss_pred CCCCCceeECCCCcEEE
Q 039428 153 KSTADDIAVDAEGNAYV 169 (335)
Q Consensus 153 ~~~p~~~~vd~~G~lyV 169 (335)
-..|.|++++.+|-+-|
T Consensus 87 Tg~~lD~AI~G~GfF~V 103 (259)
T TIGR02488 87 TGNDLDLAIEGEGFFQV 103 (259)
T ss_pred cCCcceEEEcCCcEEEE
Confidence 35677888877774333
No 432
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=23.14 E-value=2.1e+02 Score=18.13 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=23.9
Q ss_pred eeeeEEcCCCCEEEEEecCCeEEEEECCCCC
Q 039428 51 CETAKWDDVGRRFLVSFLDGGVGQVLVPDEY 81 (335)
Q Consensus 51 pegia~d~~g~~~~~~~~~~~I~~~d~~~g~ 81 (335)
-..+.|.|..+++.+...+|+|..+.. +++
T Consensus 14 v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 357899999999999888998887764 343
No 433
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=22.67 E-value=3.5e+02 Score=27.52 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=47.7
Q ss_pred CceeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCC
Q 039428 157 DDIAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 157 ~~~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~ 235 (335)
.|++--|.-..+|+-++..++..+|.++.... +...+.. .....-.+||.+.+ .+|++-..++.|...|..-
T Consensus 104 fDl~wapge~~lVsasGDsT~r~Wdvk~s~l~--G~~~~~G-----H~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 104 FDLKWAPGESLLVSASGDSTIRPWDVKTSRLV--GGRLNLG-----HTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC 176 (720)
T ss_pred EeeccCCCceeEEEccCCceeeeeeeccceee--cceeecc-----cccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence 34554563358888889999999998765443 1101111 22336678999977 8899888888887777654
No 434
>COG4222 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.32 E-value=7e+02 Score=23.89 Aligned_cols=48 Identities=19% Similarity=0.143 Sum_probs=26.1
Q ss_pred EEEECCCCEEEEEeCCCCceeEEEEeccC-----C-----cCCCCCCeEEEcCCC-cEEEE
Q 039428 219 IVIHMCSGNLFKIDIRKEEEEVKLIELRG-----G-----SSLSLGDGLALLSPT-KLVVA 268 (335)
Q Consensus 219 yvad~~~~~v~~~d~~~~~~~~~~~~~~g-----~-----~~~~~pdGia~d~~g-~l~va 268 (335)
|+.+...--|++++.++. .++.+.+.. + +.-.+-.||++.+++ .||.+
T Consensus 159 ~igdefgP~l~~f~~~Gk--~~~~~~~~~~~~~~~~p~g~~~n~gfEglait~d~~~L~~~ 217 (391)
T COG4222 159 WIGDEFGPYLLEFDANGK--LVRVLEVPVRFLPPDNPKGLRNNLGFEGLAITPDGKKLYAL 217 (391)
T ss_pred ccccccCcceEEECCCCc--cccccccccccCcCCCccccccccceeeEEecCCCceEEEE
Confidence 566666667777777754 222221110 0 001245789999987 46655
No 435
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=22.28 E-value=5.6e+02 Score=27.37 Aligned_cols=123 Identities=18% Similarity=0.163 Sum_probs=0.0
Q ss_pred eeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccceEEE
Q 039428 53 TAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSALAA 132 (335)
Q Consensus 53 gia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~ 132 (335)
++.|+|..-++......+.+.++...+.+ ..+.+........++.++++++.+.- .|..+. -.+++
T Consensus 64 SLCWHpe~~vLa~gwe~g~~~v~~~~~~e----------~htv~~th~a~i~~l~wS~~G~~l~t--~d~~g~--v~lwr 129 (1416)
T KOG3617|consen 64 SLCWHPEEFVLAQGWEMGVSDVQKTNTTE----------THTVVETHPAPIQGLDWSHDGTVLMT--LDNPGS--VHLWR 129 (1416)
T ss_pred hhccChHHHHHhhccccceeEEEecCCce----------eeeeccCCCCCceeEEecCCCCeEEE--cCCCce--eEEEE
Q ss_pred EE--------------CCCCeEEEEeecCCCccCCCCCCceeEC--------------------------CCCcEEEEeC
Q 039428 133 YD--------------LSTWKRLFLTQLSGKSEEKSTADDIAVD--------------------------AEGNAYVTDV 172 (335)
Q Consensus 133 ~d--------------~~~~~~~~~~~~~~~~~~~~~p~~~~vd--------------------------~~G~lyV~d~ 172 (335)
+| +...-..+-..++.+.+....+.-.+|. ++|..|+...
T Consensus 130 ~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g~~F~~~~ 209 (1416)
T KOG3617|consen 130 YDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKGTEFLFAG 209 (1416)
T ss_pred eeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCCcEEEEEc
Q ss_pred CCCeEEEEccCCcEEEE
Q 039428 173 VSSKIWKVGVEGQLLSI 189 (335)
Q Consensus 173 ~~~~I~~~d~~g~~~~~ 189 (335)
..|.||-+|.+|+...+
T Consensus 210 ~~GtVyyvdq~g~~~~V 226 (1416)
T KOG3617|consen 210 KSGTVYYVDQNGRQRTV 226 (1416)
T ss_pred CCceEEEEcCCCcEEEE
No 436
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=21.94 E-value=8.1e+02 Score=24.54 Aligned_cols=136 Identities=11% Similarity=0.111 Sum_probs=68.3
Q ss_pred ceEEEEECCCCeEEEEeecCCCccCCCCC-Cce-eECCCCcEEEEeCCCCeEEEEccC--CcEEEEecCCcccccccccc
Q 039428 128 SALAAYDLSTWKRLFLTQLSGKSEEKSTA-DDI-AVDAEGNAYVTDVVSSKIWKVGVE--GQLLSIIRSPLFTAKEWYKN 203 (335)
Q Consensus 128 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~p-~~~-~vd~~G~lyV~d~~~~~I~~~d~~--g~~~~~~~~~~~~~~~~~~~ 203 (335)
+.++++|.+-|+++-...+....--...| +.. ...+.+.+ |. -.+..|+|+||. |..+.+.....+..
T Consensus 490 ~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtl-vG-lS~~svFrIDPR~~gNKi~v~esKdY~t------ 561 (776)
T COG5167 490 DKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTL-VG-LSDYSVFRIDPRARGNKIKVVESKDYKT------ 561 (776)
T ss_pred ccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceE-Ee-ecccceEEecccccCCceeeeeehhccc------
Confidence 57999999988876433332110000011 111 11233432 22 235689999986 54444332222331
Q ss_pred ccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEcCCCcEEEE-ecCCCeEEEEE
Q 039428 204 VFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALLSPTKLVVA-GNPYPSARLVE 279 (335)
Q Consensus 204 ~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d~~g~l~va-~~~~~~~~v~~ 279 (335)
...-+.++-...|++-++. ..|-|.-+|.-+.. ....++.-|+. .-++.+.++|...+| +- +-+..++
T Consensus 562 Kn~Fss~~tTesGyIa~as-~kGDirLyDRig~r-AKtalP~lG~a----Ik~idvta~Gk~ilaTCk--~yllL~d 630 (776)
T COG5167 562 KNKFSSGMTTESGYIAAAS-RKGDIRLYDRIGKR-AKTALPGLGDA----IKHIDVTANGKHILATCK--NYLLLTD 630 (776)
T ss_pred cccccccccccCceEEEec-CCCceeeehhhcch-hhhcCcccccc----eeeeEeecCCcEEEEeec--ceEEEEe
Confidence 2234445556577776654 45556666665531 22233333322 568888888875555 43 3344444
No 437
>PRK12642 flgF flagellar basal body rod protein FlgF; Reviewed
Probab=21.94 E-value=3.1e+02 Score=24.12 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=11.4
Q ss_pred CCCCCceeECCCCcEEE
Q 039428 153 KSTADDIAVDAEGNAYV 169 (335)
Q Consensus 153 ~~~p~~~~vd~~G~lyV 169 (335)
-..|.|+++..+|-+-|
T Consensus 73 Tg~~lDlAI~G~GFF~V 89 (241)
T PRK12642 73 TGNPLDFAVKGDAWFSF 89 (241)
T ss_pred CCCcceEEECCCcEEEE
Confidence 35677888877774444
No 438
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=21.47 E-value=1.7e+02 Score=29.55 Aligned_cols=41 Identities=17% Similarity=0.195 Sum_probs=0.0
Q ss_pred eeEEEcCCCcceeeeEEcCCCCEEEEEecCCeEEEEECCCCC
Q 039428 40 HVYQYHSPSFLCETAKWDDVGRRFLVSFLDGGVGQVLVPDEY 81 (335)
Q Consensus 40 ~~~~~~~~~~~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~ 81 (335)
..+..++.... .+++|.++|+++.+...+|+|.-.|...+.
T Consensus 55 wtip~p~~~v~-~sL~W~~DGkllaVg~kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 55 WTIPIPGENVT-ASLCWRPDGKLLAVGFKDGTIRLHDVEKGG 95 (665)
T ss_pred EeccCCCCccc-eeeeecCCCCEEEEEecCCeEEEEEccCCC
No 439
>PRK13614 lipoprotein LpqB; Provisional
Probab=21.41 E-value=5.2e+02 Score=26.13 Aligned_cols=26 Identities=8% Similarity=0.153 Sum_probs=18.8
Q ss_pred EEEccCCeEEEEECCC-CEEEEEeCCC
Q 039428 210 IVYHPDGFLIVIHMCS-GNLFKIDIRK 235 (335)
Q Consensus 210 ia~~~dg~Lyvad~~~-~~v~~~d~~~ 235 (335)
-.|+++|.+|..+.++ ++|.++...+
T Consensus 388 PS~d~~g~vWtv~~g~~~~vv~~~~~g 414 (573)
T PRK13614 388 PSFSPQDWVWTAGPGGNGRIVAYRPTG 414 (573)
T ss_pred CcccCCCCEEEeeCCCCceEEEEecCC
Confidence 3788888999877544 5788877654
No 440
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=21.36 E-value=1.2e+03 Score=26.16 Aligned_cols=166 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred EEEeCCCCeEEEEEecCCCCccceEEEEECC---CCeEEEEeecCCCccCCCCCCceeECCCCcEEEEeCCCCeEEEEcc
Q 039428 106 IAVDRPRNRLLVAFTDVLGNKYSALAAYDLS---TWKRLFLTQLSGKSEEKSTADDIAVDAEGNAYVTDVVSSKIWKVGV 182 (335)
Q Consensus 106 i~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~---~~~~~~~~~~~~~~~~~~~p~~~~vd~~G~lyV~d~~~~~I~~~d~ 182 (335)
+++.++.+.++|+..|. +.|.+||.. ++.........-... .+...-++.-+.|+-|+..+..|.|..++-
T Consensus 1054 ~a~s~~~~s~FvsgS~D-----GtVKvW~~~k~~~~~~s~rS~ltys~~-~sr~~~vt~~~~~~~~Av~t~DG~v~~~~i 1127 (1431)
T KOG1240|consen 1054 LAVSSEHTSLFVSGSDD-----GTVKVWNLRKLEGEGGSARSELTYSPE-GSRVEKVTMCGNGDQFAVSTKDGSVRVLRI 1127 (1431)
T ss_pred eeecCCCCceEEEecCC-----ceEEEeeehhhhcCcceeeeeEEEecc-CCceEEEEeccCCCeEEEEcCCCeEEEEEc
Q ss_pred CC--cEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCCceeEEEEeccCCcCCCCCCeEEEc
Q 039428 183 EG--QLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKEEEEVKLIELRGGSSLSLGDGLALL 260 (335)
Q Consensus 183 ~g--~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~~~~~~~~~~~g~~~~~~pdGia~d 260 (335)
+- .................+....-++-.....-.+.+.-+..++|.-+|+.... .........++ +...-+++|
T Consensus 1128 d~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~-~~w~lk~~~~h--G~vTSi~id 1204 (1431)
T KOG1240|consen 1128 DHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH-DAWRLKNQLRH--GLVTSIVID 1204 (1431)
T ss_pred cccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh-hHHhhhcCccc--cceeEEEec
Q ss_pred CCCcEEEEecCCCeEEEEEc
Q 039428 261 SPTKLVVAGNPYPSARLVES 280 (335)
Q Consensus 261 ~~g~l~va~~~~~~~~v~~~ 280 (335)
+.+++.+.++..+.+...+.
T Consensus 1205 p~~~WlviGts~G~l~lWDL 1224 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDL 1224 (1431)
T ss_pred CCceEEEEecCCceEEEEEe
No 441
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=20.97 E-value=5.4e+02 Score=26.11 Aligned_cols=68 Identities=10% Similarity=0.141 Sum_probs=40.0
Q ss_pred EEEeccCCcCCCCCCeEEEcCCC-cEEEEecCCCeEEEEEcCCCcEEEEEeeeecCCCCCcceEEEEe-CCeEEE
Q 039428 241 KLIELRGGSSLSLGDGLALLSPT-KLVVAGNPYPSARLVESSDGWETASVVAKFNGPTHRVATAATVK-DGRVYL 313 (335)
Q Consensus 241 ~~~~~~g~~~~~~pdGia~d~~g-~l~va~~~~~~~~v~~~~~~~~~~~~~~~~~~p~~~~Pt~va~~-~g~lyV 313 (335)
+.+.++| .-.||=||+|+.. .+.||.|.-|-+-|+..... ....+-.+.......|.+++|- ++-|.+
T Consensus 331 rKV~IPG---ILvPDliAfn~kaq~VAVASNTcn~ilVYSv~~s--~mPniQqIqLe~~ERPKGiCFltdklLLi 400 (671)
T PF15390_consen 331 RKVSIPG---ILVPDLIAFNPKAQVVAVASNTCNIILVYSVTPS--SMPNIQQIQLESNERPKGICFLTDKLLLI 400 (671)
T ss_pred eeecccc---ccccceeeeCCcCCEEEEEecCCcEEEEEEeccc--cCCCeeEEEcccCCCCceeeEccCCeEEE
Confidence 3455555 3459999999886 56777665566666654321 1111223333445568899995 555554
No 442
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=20.80 E-value=7.9e+02 Score=23.93 Aligned_cols=62 Identities=8% Similarity=-0.022 Sum_probs=30.2
Q ss_pred CCCCCceeECCCCc-EEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCCeEEEEECCCCEEEEE
Q 039428 153 KSTADDIAVDAEGN-AYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKI 231 (335)
Q Consensus 153 ~~~p~~~~vd~~G~-lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~ 231 (335)
..+|..+...|+|+ +.|++ .+....++..+...... ......+|.+++...+-+. +++|..+
T Consensus 32 ~~~p~~ls~npngr~v~V~g--~geY~iyt~~~~r~k~~--------------G~g~~~vw~~~n~yAv~~~-~~~I~I~ 94 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCG--DGEYEIYTALAWRNKAF--------------GSGLSFVWSSRNRYAVLES-SSTIKIY 94 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEE--TTEEEEEETTTTEEEEE--------------EE-SEEEE-TSSEEEEE-T-TS-EEEE
T ss_pred CcCCeeEEECCCCCEEEEEc--CCEEEEEEccCCccccc--------------CceeEEEEecCccEEEEEC-CCeEEEE
Confidence 46799999999997 45543 34444444333222211 1256778887665434443 6666654
No 443
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.70 E-value=7.3e+02 Score=23.50 Aligned_cols=158 Identities=11% Similarity=0.066 Sum_probs=88.8
Q ss_pred ceeeeEEcCCCCEEEEEecCCeEEEEECCCCCCCcceeeeeEEeecCCcCCCCcceEEEeCCCCeEEEEEecCCCCccce
Q 039428 50 LCETAKWDDVGRRFLVSFLDGGVGQVLVPDEYSPGTVLEEVKLVKEDDVVGNATMGIAVDRPRNRLLVAFTDVLGNKYSA 129 (335)
Q Consensus 50 ~pegia~d~~g~~~~~~~~~~~I~~~d~~~g~~~~~v~~~~~~~~~~~~~~~~p~Gi~~d~~~g~l~v~~~D~~~~~~~~ 129 (335)
.-..+++-|.|+.+.....+++|..|+-.++. . +..+++.. .+..-+++.. +|+|+++. +. + ..
T Consensus 195 ~vS~V~f~P~gd~ilS~srD~tik~We~~tg~------c---v~t~~~h~-ewvr~v~v~~-DGti~As~-s~--d--qt 258 (406)
T KOG0295|consen 195 GVSSVFFLPLGDHILSCSRDNTIKAWECDTGY------C---VKTFPGHS-EWVRMVRVNQ-DGTIIASC-SN--D--QT 258 (406)
T ss_pred ceeeEEEEecCCeeeecccccceeEEecccce------e---EEeccCch-HhEEEEEecC-CeeEEEec-CC--C--ce
Confidence 34678888888755555889999999864443 2 11223211 2556777874 78888752 22 2 23
Q ss_pred EEEEECCCCe--EE-E-------EeecCCCccCCCCCC--ceeECC-CCcEEEEeCCCCeEEEEccCC-cEEEEecCCcc
Q 039428 130 LAAYDLSTWK--RL-F-------LTQLSGKSEEKSTAD--DIAVDA-EGNAYVTDVVSSKIWKVGVEG-QLLSIIRSPLF 195 (335)
Q Consensus 130 v~~~d~~~~~--~~-~-------~~~~~~~~~~~~~p~--~~~vd~-~G~lyV~d~~~~~I~~~d~~g-~~~~~~~~~~~ 195 (335)
|.+|=..+++ .+ . -+...+. ..+|+ +.+=.. .|.+.++.+....|..+|... ..+-.+..
T Consensus 259 l~vW~~~t~~~k~~lR~hEh~vEci~wap~---~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~g--- 332 (406)
T KOG0295|consen 259 LRVWVVATKQCKAELREHEHPVECIAWAPE---SSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVG--- 332 (406)
T ss_pred EEEEEeccchhhhhhhccccceEEEEeccc---ccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEec---
Confidence 6666555551 10 0 0111000 11211 111111 234666677777888888653 33222211
Q ss_pred ccccccccccccCeEEEccCCeEEEEECCCCEEEEEeCCCC
Q 039428 196 TAKEWYKNVFGLNGIVYHPDGFLIVIHMCSGNLFKIDIRKE 236 (335)
Q Consensus 196 ~~~~~~~~~~~p~Gia~~~dg~Lyvad~~~~~v~~~d~~~~ 236 (335)
......|++|+|.|.-+++-..++.|...|++..
T Consensus 333 -------hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~ 366 (406)
T KOG0295|consen 333 -------HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL 366 (406)
T ss_pred -------ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc
Confidence 2234789999999966667778888988899876
No 444
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=20.46 E-value=3.4e+02 Score=27.84 Aligned_cols=73 Identities=8% Similarity=0.065 Sum_probs=39.9
Q ss_pred eeECCCCcEEEEeCCCCeEEEEccCCcEEEEecCCccccccccccccccCeEEEccCC-eEEEEECCCCEEEEEeCCC
Q 039428 159 IAVDAEGNAYVTDVVSSKIWKVGVEGQLLSIIRSPLFTAKEWYKNVFGLNGIVYHPDG-FLIVIHMCSGNLFKIDIRK 235 (335)
Q Consensus 159 ~~vd~~G~lyV~d~~~~~I~~~d~~g~~~~~~~~~~~~~~~~~~~~~~p~Gia~~~dg-~Lyvad~~~~~v~~~d~~~ 235 (335)
..+.++..+.++.+.+++|.++-.+..... ...+..+...........++|++++ ++|+.|. .|+|.-..++.
T Consensus 82 ~~vs~~e~lvAagt~~g~V~v~ql~~~~p~---~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~-~Gkv~~~~L~s 155 (726)
T KOG3621|consen 82 RSVSSVEYLVAAGTASGRVSVFQLNKELPR---DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS-QGKVVLTELDS 155 (726)
T ss_pred EEecchhHhhhhhcCCceEEeehhhccCCC---cceeeccccccCCceEEEEEecccccEEeecCC-CceEEEEEech
Confidence 334455556666677777777665421110 0011111111123457899999999 9999885 45555444444
No 445
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.19 E-value=1.5e+02 Score=22.13 Aligned_cols=9 Identities=22% Similarity=0.526 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 039428 9 KTLLFFFII 17 (335)
Q Consensus 9 ~~~~~~~~~ 17 (335)
|++||++++
T Consensus 4 K~~llL~l~ 12 (95)
T PF07172_consen 4 KAFLLLGLL 12 (95)
T ss_pred hHHHHHHHH
Confidence 344444433
No 446
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=20.08 E-value=3.2e+02 Score=24.65 Aligned_cols=77 Identities=13% Similarity=0.217 Sum_probs=48.2
Q ss_pred CcceEEEeCCCCeEEEEEecCCCCccceEEEEECCCCeEEEEeecCCCccCCCCCCceeECCC-C-cEEEEeCCCCeEEE
Q 039428 102 ATMGIAVDRPRNRLLVAFTDVLGNKYSALAAYDLSTWKRLFLTQLSGKSEEKSTADDIAVDAE-G-NAYVTDVVSSKIWK 179 (335)
Q Consensus 102 ~p~Gi~~d~~~g~l~v~~~D~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~p~~~~vd~~-G-~lyV~d~~~~~I~~ 179 (335)
....++.+|.+.++.++..+. ..+..+|.+..... ..-+.. ....-+.+-|.|+ + ++|.+ +..|.+|+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~d-----g~~~l~d~rn~~~p-~S~l~a---hk~~i~eV~FHpk~p~~Lft~-sedGslw~ 250 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDD-----GIVGLWDARNVAMP-VSLLKA---HKAEIWEVHFHPKNPEHLFTC-SEDGSLWH 250 (319)
T ss_pred cchhhhCCcccccEEEEecCC-----CeEEEEEcccccch-HHHHHH---hhhhhhheeccCCCchheeEe-cCCCcEEE
Confidence 356777888778888864433 24778887654211 011111 1244566888886 4 46665 77899999
Q ss_pred EccCCcEEE
Q 039428 180 VGVEGQLLS 188 (335)
Q Consensus 180 ~d~~g~~~~ 188 (335)
+|..++++.
T Consensus 251 wdas~~~l~ 259 (319)
T KOG4714|consen 251 WDASTTFLS 259 (319)
T ss_pred EcCCCceEE
Confidence 999986653
Done!