Query 039430
Match_columns 308
No_of_seqs 256 out of 2202
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 09:36:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 9.9E-54 2.2E-58 421.0 24.2 296 1-304 209-570 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 4.2E-38 9E-43 278.8 7.5 229 1-233 48-282 (287)
3 PLN03210 Resistant to P. syrin 100.0 9E-32 2E-36 276.8 22.8 239 42-290 287-566 (1153)
4 PRK04841 transcriptional regul 98.9 6.9E-08 1.5E-12 98.6 17.2 225 2-241 56-332 (903)
5 TIGR03015 pepcterm_ATPase puta 98.0 0.00092 2E-08 58.4 17.5 148 11-160 79-242 (269)
6 COG2909 MalT ATP-dependent tra 97.7 0.00068 1.5E-08 66.5 12.5 228 4-244 66-341 (894)
7 PF05729 NACHT: NACHT domain 97.3 0.0018 3.9E-08 51.8 9.2 76 49-124 79-163 (166)
8 PRK00411 cdc6 cell division co 97.3 0.036 7.8E-07 51.3 19.0 195 5-210 88-306 (394)
9 PRK06893 DNA replication initi 96.9 0.0056 1.2E-07 52.3 8.3 100 53-158 93-205 (229)
10 PF01637 Arch_ATPase: Archaeal 96.7 0.015 3.3E-07 49.0 10.1 102 51-155 118-233 (234)
11 TIGR02928 orc1/cdc6 family rep 96.6 0.45 9.8E-06 43.4 19.4 148 5-152 77-242 (365)
12 PF13401 AAA_22: AAA domain; P 96.2 0.014 3E-07 44.8 6.1 85 4-90 39-125 (131)
13 COG3903 Predicted ATPase [Gene 96.1 0.0031 6.7E-08 57.3 1.8 173 39-219 76-258 (414)
14 PRK05564 DNA polymerase III su 96.0 0.15 3.2E-06 45.7 12.5 98 49-155 91-189 (313)
15 TIGR00678 holB DNA polymerase 95.9 0.62 1.3E-05 38.2 15.0 91 50-151 95-186 (188)
16 PRK07471 DNA polymerase III su 95.5 0.19 4.2E-06 46.0 11.3 99 50-157 140-239 (365)
17 PRK00080 ruvB Holliday junctio 95.4 0.028 6.1E-07 50.8 5.5 130 81-222 151-281 (328)
18 PRK13342 recombination factor 95.3 1.6 3.4E-05 40.8 17.0 106 49-159 90-199 (413)
19 TIGR00635 ruvB Holliday juncti 95.1 0.15 3.3E-06 45.4 9.2 104 51-158 81-203 (305)
20 PRK06645 DNA polymerase III su 94.9 0.52 1.1E-05 45.1 12.5 100 49-153 126-226 (507)
21 PRK09087 hypothetical protein; 94.5 0.41 8.9E-06 40.8 9.8 96 53-156 89-195 (226)
22 TIGR03420 DnaA_homol_Hda DnaA 94.2 0.26 5.7E-06 41.6 8.1 101 53-159 92-204 (226)
23 TIGR02397 dnaX_nterm DNA polym 94.1 2.9 6.4E-05 37.9 15.4 104 50-158 116-220 (355)
24 PRK09112 DNA polymerase III su 94.1 0.41 9E-06 43.6 9.4 101 50-157 140-241 (351)
25 PF13173 AAA_14: AAA domain 94.0 0.17 3.6E-06 38.8 5.8 109 6-116 5-127 (128)
26 PRK08727 hypothetical protein; 93.5 1.9 4.1E-05 36.8 12.0 133 15-153 53-201 (233)
27 PRK12323 DNA polymerase III su 93.4 1.5 3.3E-05 43.1 12.3 115 37-156 106-225 (700)
28 PRK05707 DNA polymerase III su 92.7 1.2 2.6E-05 40.3 10.0 98 50-156 105-203 (328)
29 PRK07003 DNA polymerase III su 92.7 2 4.3E-05 43.0 12.0 101 50-155 118-220 (830)
30 PRK14963 DNA polymerase III su 92.5 1.8 3.9E-05 41.5 11.4 99 50-153 115-214 (504)
31 PRK12402 replication factor C 92.4 1.3 2.8E-05 39.9 10.1 101 50-155 124-225 (337)
32 TIGR02903 spore_lon_C ATP-depe 92.4 0.77 1.7E-05 45.2 9.1 116 39-159 280-398 (615)
33 PLN03025 replication factor C 92.3 8 0.00017 34.7 15.7 99 50-153 98-197 (319)
34 PRK00440 rfc replication facto 92.2 8.1 0.00017 34.3 16.7 144 6-154 41-201 (319)
35 PRK14961 DNA polymerase III su 92.0 1.5 3.3E-05 40.2 10.0 101 50-155 118-219 (363)
36 PRK14955 DNA polymerase III su 91.6 2.4 5.2E-05 39.4 11.0 101 50-155 126-227 (397)
37 PRK08691 DNA polymerase III su 91.6 2.9 6.3E-05 41.5 11.8 102 50-156 118-220 (709)
38 PTZ00112 origin recognition co 91.5 5.1 0.00011 41.0 13.4 156 5-160 819-986 (1164)
39 PRK08903 DnaA regulatory inact 91.0 6.2 0.00013 33.3 12.2 105 53-160 92-203 (227)
40 PRK14960 DNA polymerase III su 90.9 5.1 0.00011 39.6 12.5 101 49-154 116-217 (702)
41 PRK08084 DNA replication initi 90.8 1.8 3.8E-05 37.1 8.7 98 54-157 100-210 (235)
42 PF05621 TniB: Bacterial TniB 90.6 7.8 0.00017 34.4 12.5 151 5-155 98-260 (302)
43 PRK07940 DNA polymerase III su 90.5 2 4.4E-05 39.8 9.3 97 50-156 116-213 (394)
44 PRK14954 DNA polymerase III su 90.3 5.3 0.00011 39.4 12.3 98 49-151 125-223 (620)
45 PF00308 Bac_DnaA: Bacterial d 90.1 1.8 3.9E-05 36.7 7.9 143 6-155 37-207 (219)
46 PRK14959 DNA polymerase III su 89.7 2.5 5.3E-05 41.5 9.4 107 49-160 117-225 (624)
47 PRK14970 DNA polymerase III su 89.6 16 0.00035 33.3 16.2 99 50-153 107-206 (367)
48 PRK14087 dnaA chromosomal repl 89.5 6.1 0.00013 37.4 11.8 102 53-158 208-321 (450)
49 PRK14971 DNA polymerase III su 89.3 7.7 0.00017 38.3 12.6 100 50-154 120-220 (614)
50 PRK08451 DNA polymerase III su 88.9 23 0.00051 34.3 17.4 115 37-156 99-218 (535)
51 cd01128 rho_factor Transcripti 88.9 0.44 9.5E-06 41.2 3.4 61 1-61 44-113 (249)
52 PRK14964 DNA polymerase III su 88.7 8.4 0.00018 36.8 12.1 101 50-155 115-216 (491)
53 PRK06620 hypothetical protein; 88.5 6.6 0.00014 33.0 10.3 93 53-153 87-186 (214)
54 PRK05642 DNA replication initi 88.4 3 6.4E-05 35.7 8.2 102 54-158 100-210 (234)
55 PRK14957 DNA polymerase III su 88.1 8.5 0.00018 37.3 11.8 103 49-156 117-221 (546)
56 PRK06305 DNA polymerase III su 87.9 9 0.00019 36.3 11.8 102 50-156 120-223 (451)
57 PRK06871 DNA polymerase III su 87.9 10 0.00022 34.2 11.5 94 50-153 106-200 (325)
58 PRK14086 dnaA chromosomal repl 87.8 9.5 0.00021 37.4 11.9 90 54-149 380-481 (617)
59 PRK07764 DNA polymerase III su 87.4 4.7 0.0001 41.1 10.1 101 49-154 118-219 (824)
60 PRK13341 recombination factor 87.3 4.4 9.5E-05 40.7 9.7 95 50-149 108-210 (725)
61 PRK14962 DNA polymerase III su 87.1 4.8 0.0001 38.3 9.4 118 50-172 116-238 (472)
62 PRK07133 DNA polymerase III su 87.0 7.6 0.00017 38.9 11.0 100 50-154 117-217 (725)
63 PRK14951 DNA polymerase III su 86.4 7.4 0.00016 38.3 10.5 102 50-156 123-225 (618)
64 PRK08769 DNA polymerase III su 86.2 5.7 0.00012 35.7 9.0 97 50-157 112-209 (319)
65 PRK14956 DNA polymerase III su 86.0 12 0.00026 35.7 11.3 100 49-153 119-219 (484)
66 PRK09111 DNA polymerase III su 86.0 15 0.00032 36.2 12.3 103 50-157 131-234 (598)
67 PRK07994 DNA polymerase III su 85.9 9.1 0.0002 37.9 10.8 103 49-156 117-220 (647)
68 PRK14949 DNA polymerase III su 85.8 12 0.00026 38.4 11.7 103 49-156 117-220 (944)
69 PRK14969 DNA polymerase III su 85.8 7.3 0.00016 37.7 10.1 97 50-151 118-215 (527)
70 PRK07399 DNA polymerase III su 85.7 7.2 0.00016 35.0 9.4 101 49-157 122-222 (314)
71 PRK05896 DNA polymerase III su 85.4 8 0.00017 37.9 10.0 103 50-157 118-222 (605)
72 PRK05629 hypothetical protein; 85.1 28 0.0006 31.2 13.1 149 2-155 5-167 (318)
73 PRK04195 replication factor C 84.9 37 0.0008 32.4 14.5 100 51-157 98-203 (482)
74 COG1373 Predicted ATPase (AAA+ 84.8 6.1 0.00013 36.7 8.8 66 51-119 94-162 (398)
75 COG2256 MGS1 ATPase related to 84.8 3.5 7.5E-05 38.0 6.8 99 48-149 101-205 (436)
76 PRK04132 replication factor C 84.2 21 0.00046 36.6 12.7 116 36-156 609-731 (846)
77 PRK07993 DNA polymerase III su 83.9 13 0.00028 33.7 10.2 95 50-154 107-202 (334)
78 PRK14953 DNA polymerase III su 83.9 16 0.00035 34.9 11.3 104 49-157 117-221 (486)
79 PRK14950 DNA polymerase III su 83.7 47 0.001 32.7 17.3 103 50-157 119-222 (585)
80 COG3899 Predicted ATPase [Gene 83.3 5.6 0.00012 40.8 8.5 168 43-216 145-324 (849)
81 PRK06090 DNA polymerase III su 83.2 13 0.00028 33.5 9.8 94 50-156 107-201 (319)
82 PRK06964 DNA polymerase III su 83.2 13 0.00028 33.8 9.9 95 50-157 131-226 (342)
83 KOG0989 Replication factor C, 83.1 6.4 0.00014 35.0 7.5 92 53-149 131-223 (346)
84 COG1474 CDC6 Cdc6-related prot 83.0 38 0.00083 31.1 13.9 151 5-155 75-237 (366)
85 PRK14958 DNA polymerase III su 82.2 12 0.00027 36.0 9.9 101 50-155 118-219 (509)
86 PRK09376 rho transcription ter 80.7 3.7 8E-05 38.0 5.4 61 1-61 197-266 (416)
87 TIGR00767 rho transcription te 79.9 5.9 0.00013 36.7 6.6 61 1-61 196-265 (415)
88 TIGR01242 26Sp45 26S proteasom 79.7 8.9 0.00019 35.1 7.8 97 50-150 214-328 (364)
89 PF14516 AAA_35: AAA-like doma 79.5 38 0.00083 30.6 11.7 53 104-163 194-246 (331)
90 PF02463 SMC_N: RecF/RecN/SMC 77.3 4.4 9.5E-05 34.0 4.7 48 51-98 158-206 (220)
91 PRK14952 DNA polymerase III su 77.2 25 0.00055 34.4 10.4 97 50-151 117-214 (584)
92 cd00009 AAA The AAA+ (ATPases 77.0 16 0.00036 27.3 7.7 45 48-92 81-131 (151)
93 PRK14948 DNA polymerase III su 76.9 31 0.00066 34.2 10.9 103 50-157 120-223 (620)
94 TIGR02880 cbbX_cfxQ probable R 76.2 18 0.0004 31.8 8.5 75 52-126 122-210 (284)
95 TIGR00362 DnaA chromosomal rep 76.2 13 0.00027 34.6 7.8 96 54-152 202-306 (405)
96 PF06144 DNA_pol3_delta: DNA p 75.1 24 0.00052 28.0 8.3 100 50-154 56-164 (172)
97 COG3267 ExeA Type II secretory 75.0 56 0.0012 28.4 11.5 145 12-158 88-247 (269)
98 PRK06647 DNA polymerase III su 74.7 89 0.0019 30.6 17.1 102 49-155 117-219 (563)
99 cd00561 CobA_CobO_BtuR ATP:cor 74.2 8.9 0.00019 30.7 5.4 50 43-92 86-139 (159)
100 PRK12422 chromosomal replicati 74.1 42 0.00092 31.7 10.8 93 53-148 204-305 (445)
101 PRK08058 DNA polymerase III su 71.6 77 0.0017 28.5 15.6 72 49-122 108-180 (329)
102 PRK05563 DNA polymerase III su 71.5 38 0.00083 33.1 10.1 101 49-154 117-218 (559)
103 TIGR01128 holA DNA polymerase 70.0 76 0.0016 27.8 11.4 117 35-154 29-151 (302)
104 PRK00149 dnaA chromosomal repl 67.3 27 0.00058 33.0 7.9 97 53-152 213-318 (450)
105 PRK07132 DNA polymerase III su 67.0 94 0.002 27.7 15.9 138 8-156 23-185 (299)
106 PRK14965 DNA polymerase III su 66.6 1.4E+02 0.003 29.4 15.6 102 50-156 118-221 (576)
107 CHL00181 cbbX CbbX; Provisiona 65.1 56 0.0012 28.8 9.1 75 52-127 123-212 (287)
108 KOG2543 Origin recognition com 63.2 58 0.0012 30.1 8.6 150 5-159 58-229 (438)
109 PRK08699 DNA polymerase III su 62.2 60 0.0013 29.3 8.8 72 50-123 112-184 (325)
110 PF13177 DNA_pol3_delta2: DNA 60.8 20 0.00044 28.6 5.0 74 36-112 83-162 (162)
111 PRK03992 proteasome-activating 59.7 52 0.0011 30.5 8.2 96 50-149 223-336 (389)
112 PHA02544 44 clamp loader, smal 59.5 1.3E+02 0.0027 26.7 14.1 71 50-122 99-171 (316)
113 PRK07914 hypothetical protein; 58.9 1.3E+02 0.0029 26.8 13.2 150 2-155 4-169 (320)
114 TIGR02881 spore_V_K stage V sp 58.4 1.1E+02 0.0024 26.3 9.7 75 52-127 106-194 (261)
115 PF00488 MutS_V: MutS domain V 58.0 41 0.0009 28.7 6.7 104 50-161 121-229 (235)
116 KOG2227 Pre-initiation complex 58.0 80 0.0017 30.0 8.8 113 15-127 218-341 (529)
117 PRK08487 DNA polymerase III su 57.6 1.4E+02 0.0031 26.7 14.2 150 2-155 15-176 (328)
118 PRK14088 dnaA chromosomal repl 57.6 1E+02 0.0022 29.1 9.9 96 51-149 194-298 (440)
119 PRK05986 cob(I)alamin adenolsy 57.5 34 0.00073 28.3 5.8 51 41-91 104-158 (191)
120 PF05496 RuvB_N: Holliday junc 57.2 1E+02 0.0022 26.3 8.7 118 37-160 89-225 (233)
121 cd05141 Barstar_evA4336-like B 56.5 64 0.0014 22.4 7.3 68 8-75 3-75 (81)
122 PF02572 CobA_CobO_BtuR: ATP:c 56.3 21 0.00046 28.9 4.4 52 41-92 85-140 (172)
123 PRK07414 cob(I)yrinic acid a,c 56.2 33 0.00071 28.0 5.5 50 42-91 105-158 (178)
124 PF12799 LRR_4: Leucine Rich r 56.1 21 0.00045 21.5 3.4 35 258-294 2-36 (44)
125 COG0593 DnaA ATPase involved i 54.3 54 0.0012 30.6 7.2 76 53-131 177-264 (408)
126 TIGR00708 cobA cob(I)alamin ad 53.8 35 0.00075 27.7 5.2 51 41-91 86-140 (173)
127 cd03285 ABC_MSH2_euk MutS2 hom 52.1 59 0.0013 27.5 6.7 104 50-162 108-219 (222)
128 smart00534 MUTSac ATPase domai 51.9 98 0.0021 25.1 7.8 107 44-158 69-182 (185)
129 cd03286 ABC_MSH6_euk MutS6 hom 50.7 28 0.00061 29.4 4.5 50 50-100 108-162 (218)
130 PRK05399 DNA mismatch repair p 50.5 44 0.00094 34.5 6.5 104 50-162 685-794 (854)
131 TIGR01070 mutS1 DNA mismatch r 49.1 60 0.0013 33.5 7.2 104 50-161 670-778 (840)
132 PRK08485 DNA polymerase III su 47.7 1.7E+02 0.0036 24.5 11.6 106 15-122 12-137 (206)
133 PF02562 PhoH: PhoH-like prote 47.5 26 0.00057 29.3 3.7 44 47-93 112-158 (205)
134 PF00004 AAA: ATPase family as 44.8 77 0.0017 23.4 5.8 51 40-90 46-111 (132)
135 TIGR01241 FtsH_fam ATP-depende 44.1 2.5E+02 0.0055 26.8 10.4 112 40-155 136-266 (495)
136 PRK08116 hypothetical protein; 43.5 19 0.00041 31.5 2.4 38 54-91 181-221 (268)
137 PF01695 IstB_IS21: IstB-like 43.4 11 0.00024 30.6 0.9 38 53-91 110-150 (178)
138 KOG2035 Replication factor C, 43.2 1.9E+02 0.004 25.8 8.2 121 52-178 127-260 (351)
139 TIGR00611 recf recF protein. A 43.1 52 0.0011 30.2 5.3 45 49-95 300-345 (365)
140 PRK00304 hypothetical protein; 43.0 83 0.0018 21.7 4.9 30 33-62 30-59 (75)
141 PRK07276 DNA polymerase III su 42.2 1.8E+02 0.004 25.7 8.4 70 49-121 102-172 (290)
142 PRK08181 transposase; Validate 42.2 1E+02 0.0022 27.0 6.7 38 53-91 169-209 (269)
143 PRK07452 DNA polymerase III su 41.6 2.5E+02 0.0055 24.9 12.1 102 49-155 59-171 (326)
144 PRK06585 holA DNA polymerase I 41.5 2.6E+02 0.0057 25.0 14.9 145 5-155 22-183 (343)
145 CHL00176 ftsH cell division pr 40.9 2.7E+02 0.0057 27.9 10.1 105 40-148 264-386 (638)
146 PTZ00454 26S protease regulato 40.5 1.3E+02 0.0029 27.9 7.6 100 46-149 233-350 (398)
147 PRK14700 recombination factor 39.6 57 0.0012 29.0 4.7 70 79-148 5-79 (300)
148 PRK13539 cytochrome c biogenes 39.1 1.1E+02 0.0023 25.3 6.3 63 44-112 138-202 (207)
149 PRK10536 hypothetical protein; 38.0 56 0.0012 28.5 4.4 42 47-91 169-213 (262)
150 COG2109 BtuR ATP:corrinoid ade 37.5 77 0.0017 26.2 4.8 50 42-91 112-165 (198)
151 COG1875 NYN ribonuclease and A 37.4 39 0.00085 31.0 3.4 37 52-91 352-388 (436)
152 PRK09162 hypoxanthine-guanine 36.6 59 0.0013 26.5 4.2 31 48-80 95-125 (181)
153 KOG2028 ATPase related to the 36.5 98 0.0021 28.6 5.7 85 36-123 205-293 (554)
154 TIGR00340 zpr1_rel ZPR1-relate 36.0 90 0.002 25.1 5.0 48 15-62 95-149 (163)
155 COG0249 MutS Mismatch repair A 35.0 1.6E+02 0.0034 30.5 7.6 103 50-161 685-793 (843)
156 PRK00409 recombination and DNA 34.0 2E+02 0.0043 29.6 8.2 102 50-162 406-512 (782)
157 PRK08939 primosomal protein Dn 33.6 37 0.00081 30.3 2.7 39 52-90 218-260 (306)
158 PRK13695 putative NTPase; Prov 33.4 1.9E+02 0.0042 22.9 6.8 42 51-95 96-140 (174)
159 cd03284 ABC_MutS1 MutS1 homolo 33.2 1.7E+02 0.0036 24.5 6.5 102 50-159 108-214 (216)
160 TIGR01069 mutS2 MutS2 family p 32.2 2.2E+02 0.0047 29.2 8.2 102 50-162 401-507 (771)
161 cd03228 ABCC_MRP_Like The MRP 32.0 2.6E+02 0.0056 22.1 7.3 53 44-96 107-160 (171)
162 PTZ00361 26 proteosome regulat 31.8 1.4E+02 0.003 28.2 6.3 80 47-126 272-369 (438)
163 cd03249 ABC_MTABC3_MDL1_MDL2 M 30.8 2.3E+02 0.0051 23.7 7.2 52 44-95 150-202 (238)
164 CHL00195 ycf46 Ycf46; Provisio 30.5 5E+02 0.011 25.0 10.9 144 4-152 16-180 (489)
165 cd03247 ABCC_cytochrome_bd The 30.5 2E+02 0.0043 22.9 6.4 53 43-95 108-161 (178)
166 PRK11608 pspF phage shock prot 30.1 2.5E+02 0.0054 25.2 7.5 38 53-90 102-150 (326)
167 cd03251 ABCC_MsbA MsbA is an e 29.8 2.4E+02 0.0051 23.6 7.0 54 43-96 148-202 (234)
168 cd03253 ABCC_ATM1_transporter 29.1 2.4E+02 0.0052 23.6 7.0 54 43-96 147-201 (236)
169 PRK06921 hypothetical protein; 29.1 46 0.00099 29.0 2.5 39 52-90 178-224 (266)
170 PRK07413 hypothetical protein; 28.9 1.5E+02 0.0032 27.5 5.7 68 43-113 116-187 (382)
171 TIGR02324 CP_lyasePhnL phospho 28.7 1.8E+02 0.004 24.1 6.1 55 44-98 160-216 (224)
172 PF14532 Sigma54_activ_2: Sigm 28.0 1.1E+02 0.0023 23.4 4.2 40 51-90 69-109 (138)
173 cd03244 ABCC_MRP_domain2 Domai 27.9 2.2E+02 0.0048 23.5 6.5 53 44-96 150-203 (221)
174 TIGR03411 urea_trans_UrtD urea 27.7 2E+02 0.0044 24.2 6.3 55 43-97 153-208 (242)
175 cd03216 ABC_Carb_Monos_I This 27.7 2.5E+02 0.0054 22.1 6.4 53 44-96 93-147 (163)
176 PRK14253 phosphate ABC transpo 27.6 2E+02 0.0044 24.3 6.3 54 44-97 156-210 (249)
177 COG1121 ZnuC ABC-type Mn/Zn tr 27.3 4.2E+02 0.009 23.0 8.5 78 17-96 117-204 (254)
178 COG0396 sufC Cysteine desulfur 27.2 2.7E+02 0.0058 24.0 6.5 62 39-100 150-213 (251)
179 PRK14247 phosphate ABC transpo 26.6 2.1E+02 0.0046 24.2 6.3 53 44-96 157-210 (250)
180 PRK07413 hypothetical protein; 26.6 1.2E+02 0.0026 28.1 4.7 50 41-90 294-347 (382)
181 PF13304 AAA_21: AAA domain; P 26.2 1.5E+02 0.0032 24.4 5.2 41 53-93 259-301 (303)
182 PRK14249 phosphate ABC transpo 26.0 2.4E+02 0.0052 23.9 6.5 55 43-97 157-212 (251)
183 PRK10923 glnG nitrogen regulat 25.9 3.2E+02 0.007 25.7 7.9 37 54-90 235-282 (469)
184 COG2884 FtsE Predicted ATPase 25.8 2.6E+02 0.0057 23.4 6.1 62 38-99 142-205 (223)
185 cd03215 ABC_Carb_Monos_II This 25.8 2.6E+02 0.0056 22.4 6.3 54 43-96 114-169 (182)
186 cd03263 ABC_subfamily_A The AB 25.2 2.4E+02 0.0051 23.3 6.2 54 44-97 144-198 (220)
187 cd03252 ABCC_Hemolysin The ABC 25.2 2.6E+02 0.0056 23.4 6.5 53 44-96 149-202 (237)
188 PRK10869 recombination and rep 25.1 3.8E+02 0.0082 26.2 8.2 45 52-96 453-498 (553)
189 PRK06835 DNA replication prote 25.0 58 0.0013 29.4 2.5 38 53-90 248-288 (329)
190 PRK14246 phosphate ABC transpo 24.9 2.4E+02 0.0053 24.2 6.3 55 43-97 163-218 (257)
191 PRK14272 phosphate ABC transpo 24.6 2.5E+02 0.0054 23.8 6.3 53 44-96 159-212 (252)
192 PRK14245 phosphate ABC transpo 24.6 2.5E+02 0.0053 23.9 6.3 53 44-96 157-210 (250)
193 PRK14258 phosphate ABC transpo 24.5 2.8E+02 0.0061 23.7 6.7 56 43-98 160-218 (261)
194 cd03369 ABCC_NFT1 Domain 2 of 24.3 2.7E+02 0.0057 22.8 6.2 53 44-96 136-189 (207)
195 PRK13540 cytochrome c biogenes 24.0 1.7E+02 0.0037 23.9 5.0 55 43-97 137-193 (200)
196 PRK14244 phosphate ABC transpo 23.7 2.5E+02 0.0053 23.9 6.1 53 44-96 160-213 (251)
197 PRK14266 phosphate ABC transpo 23.7 2.6E+02 0.0056 23.7 6.2 53 44-96 157-210 (250)
198 PRK14269 phosphate ABC transpo 23.7 2.7E+02 0.0059 23.5 6.4 55 42-96 151-206 (246)
199 PRK14235 phosphate transporter 23.5 2.7E+02 0.0058 24.0 6.3 54 44-97 174-228 (267)
200 cd03241 ABC_RecN RecN ATPase i 23.5 2.9E+02 0.0063 24.0 6.6 46 51-96 192-238 (276)
201 TIGR03740 galliderm_ABC gallid 23.4 2.2E+02 0.0049 23.6 5.7 54 44-97 135-190 (223)
202 PRK14265 phosphate ABC transpo 23.3 2.8E+02 0.006 24.0 6.4 63 43-109 171-234 (274)
203 smart00709 Zpr1 Duplicated dom 23.2 2.2E+02 0.0047 22.8 5.1 48 15-62 97-154 (160)
204 KOG0927 Predicted transporter 23.2 2.4E+02 0.0051 27.6 6.0 61 38-99 226-287 (614)
205 PF10236 DAP3: Mitochondrial r 23.1 1.7E+02 0.0038 26.0 5.1 49 105-153 258-306 (309)
206 PRK10744 pstB phosphate transp 23.0 2.8E+02 0.006 23.7 6.3 54 43-96 166-220 (260)
207 cd03300 ABC_PotA_N PotA is an 23.0 2.1E+02 0.0045 24.0 5.4 54 43-96 140-196 (232)
208 cd03214 ABC_Iron-Siderophores_ 22.8 2.5E+02 0.0054 22.4 5.7 55 43-97 107-164 (180)
209 PRK14268 phosphate ABC transpo 22.8 2.8E+02 0.006 23.7 6.3 54 44-97 165-219 (258)
210 TIGR01818 ntrC nitrogen regula 22.4 2.4E+02 0.0051 26.5 6.2 40 52-91 229-279 (463)
211 PRK14236 phosphate transporter 22.4 2.6E+02 0.0056 24.2 6.0 54 43-96 178-232 (272)
212 PRK10820 DNA-binding transcrip 22.4 3.7E+02 0.0081 26.0 7.6 39 53-91 300-349 (520)
213 cd03257 ABC_NikE_OppD_transpor 22.3 2.3E+02 0.0051 23.4 5.6 54 44-97 156-212 (228)
214 PRK06526 transposase; Provisio 22.3 64 0.0014 27.9 2.1 39 52-91 160-201 (254)
215 PRK14237 phosphate transporter 22.2 2.8E+02 0.0061 23.8 6.2 53 44-96 174-227 (267)
216 PRK14267 phosphate ABC transpo 22.2 2.8E+02 0.0061 23.5 6.2 53 44-96 160-213 (253)
217 cd03254 ABCC_Glucan_exporter_l 21.8 3.4E+02 0.0075 22.5 6.5 54 43-96 149-203 (229)
218 PRK14273 phosphate ABC transpo 21.8 3.1E+02 0.0068 23.3 6.4 54 44-97 161-215 (254)
219 PRK14274 phosphate ABC transpo 21.4 3E+02 0.0064 23.5 6.2 53 44-96 166-219 (259)
220 PRK12377 putative replication 21.4 83 0.0018 27.1 2.6 38 53-90 165-205 (248)
221 PRK14242 phosphate transporter 21.4 3E+02 0.0066 23.3 6.2 53 44-96 160-213 (253)
222 COG0470 HolB ATPase involved i 21.4 4.9E+02 0.011 22.7 7.8 59 50-110 108-167 (325)
223 cd03225 ABC_cobalt_CbiO_domain 21.4 2.7E+02 0.0058 22.8 5.7 54 44-97 145-200 (211)
224 PF07034 ORC3_N: Origin recogn 21.3 6.1E+02 0.013 22.8 8.9 72 5-76 121-224 (330)
225 TIGR00634 recN DNA repair prot 21.3 4.5E+02 0.0097 25.7 7.9 45 52-96 463-508 (563)
226 PF01337 Barstar: Barstar (bar 21.3 2.9E+02 0.0064 19.2 5.8 53 8-60 3-57 (90)
227 PF06794 UPF0270: Uncharacteri 21.2 2.7E+02 0.0059 18.9 4.5 29 33-61 31-59 (70)
228 PRK09183 transposase/IS protei 21.1 67 0.0015 27.8 2.0 39 51-90 164-205 (259)
229 PF07693 KAP_NTPase: KAP famil 20.7 5.8E+02 0.013 22.4 10.8 62 36-97 155-220 (325)
230 TIGR00602 rad24 checkpoint pro 20.7 5.8E+02 0.013 25.5 8.5 46 104-149 267-316 (637)
231 KOG0741 AAA+-type ATPase [Post 20.7 4.4E+02 0.0096 25.9 7.2 96 45-146 592-704 (744)
232 PRK14251 phosphate ABC transpo 20.6 2.9E+02 0.0062 23.4 5.9 53 44-96 158-211 (251)
233 COG0497 RecN ATPase involved i 20.6 4.5E+02 0.0097 25.7 7.5 46 54-99 456-502 (557)
234 cd03245 ABCC_bacteriocin_expor 20.5 3.6E+02 0.0077 22.2 6.3 52 44-95 151-203 (220)
235 cd03267 ABC_NatA_like Similar 20.5 3.1E+02 0.0068 23.0 6.0 55 43-97 163-220 (236)
236 PF03861 ANTAR: ANTAR domain; 20.5 1.1E+02 0.0024 19.4 2.4 34 106-143 23-56 (56)
237 cd03235 ABC_Metallic_Cations A 20.5 3.3E+02 0.0071 22.3 6.1 54 44-97 143-198 (213)
238 cd03230 ABC_DR_subfamily_A Thi 20.3 3.6E+02 0.0078 21.3 6.1 55 43-97 105-161 (173)
239 COG2204 AtoC Response regulato 20.3 4.4E+02 0.0095 25.2 7.3 114 5-124 6-120 (464)
240 PRK05022 anaerobic nitric oxid 20.3 4.9E+02 0.011 25.0 7.9 37 54-90 284-331 (509)
241 PRK14262 phosphate ABC transpo 20.3 3.5E+02 0.0076 22.8 6.4 54 43-96 156-210 (250)
242 PRK04966 hypothetical protein; 20.2 2.1E+02 0.0045 19.6 3.8 30 33-62 31-60 (72)
243 TIGR00960 3a0501s02 Type II (G 20.2 3.9E+02 0.0084 21.9 6.5 55 43-97 148-204 (216)
244 PRK13543 cytochrome c biogenes 20.2 3.3E+02 0.0071 22.4 6.0 57 43-99 147-205 (214)
245 cd03226 ABC_cobalt_CbiO_domain 20.2 3.4E+02 0.0073 22.1 6.0 54 44-97 137-192 (205)
246 cd03264 ABC_drug_resistance_li 20.1 3.6E+02 0.0079 22.0 6.2 55 43-97 140-195 (211)
247 TIGR03346 chaperone_ClpB ATP-d 20.0 1.7E+02 0.0037 30.3 5.0 39 52-90 668-717 (852)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-54 Score=420.95 Aligned_cols=296 Identities=32% Similarity=0.538 Sum_probs=256.5
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCC--CCCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHhhcCC
Q 039430 1 HFELKIWICVSVDFGERQIMTKIINSITGEN--QSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGG 78 (308)
Q Consensus 1 ~Fd~~~WV~vs~~~~~~~ll~~il~~l~~~~--~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~ 78 (308)
+||.++||+||+.++..+++++|++.++... ....+.++++..+.+.|++|||||||||||+. .+|+.+..++|..
T Consensus 209 ~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~ 286 (889)
T KOG4658|consen 209 HFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSR 286 (889)
T ss_pred cCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCc
Confidence 6999999999999999999999999987533 33334578999999999999999999999998 6699999999999
Q ss_pred CCCcEEEEEecchHHHhh-hccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 79 ANGSKILVTTRSRKVASI-MGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 79 ~~gs~IlvTTR~~~va~~-~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
.+||||++|||++.|+.. +++. ..++++.|+++|||+||++.+|......++.++++|++|+++|+|+|||+.++|
T Consensus 287 ~~g~KvvlTTRs~~V~~~~m~~~---~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG 363 (889)
T KOG4658|consen 287 ENGSKVVLTTRSEEVCGRAMGVD---YPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLG 363 (889)
T ss_pred cCCeEEEEEeccHhhhhccccCC---ccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHH
Confidence 999999999999999998 7765 889999999999999999999987555566799999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHhhhccccc----cccCccchhhhhhhcCCChhhhHHHhhhhcCCCCceeecccc----------
Q 039430 158 SLLYDSTDEHFWEYVRDNEIWRLE----QKESGILPALRLSYDQLPPHLKQCVAYCSIFPKDFEFDSYSL---------- 223 (308)
Q Consensus 158 ~~L~~~~~~~~w~~~~~~~~~~~~----~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~l---------- 223 (308)
+.|+.+.+..+|+++.+...+... +..+.+++++++||+.||+++|.||+|||+||+||.|+.+.|
T Consensus 364 ~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi 443 (889)
T KOG4658|consen 364 GLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFI 443 (889)
T ss_pred HHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCc
Confidence 999999999999999987766532 224678999999999999999999999999999999998877
Q ss_pred ----------------------------------cceeEEchhHHHHHHHHhc-----cccEEEeCCC-------CCCCC
Q 039430 224 ----------------------------------LFYFKMHDLMHDLALLVAK-----DEFLVVNSDC-------QSIPK 257 (308)
Q Consensus 224 ----------------------------------~~~~~mHdlv~~~a~~~~~-----~e~~~~~~~~-------~~~~~ 257 (308)
...|+|||+|||+|.++|+ +|++++..+. ...+.
T Consensus 444 ~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~ 523 (889)
T KOG4658|consen 444 DPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWN 523 (889)
T ss_pred CccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchh
Confidence 1689999999999999999 7777776541 12235
Q ss_pred CeEEEEEEecCCCccccccccCCCCCcceEEEcCCC--CC-CcHHHHHHh
Q 039430 258 RVRHLSFAVANASRNDFSSLLSDLGRVRTIFFSTDD--EK-TSQSFIESC 304 (308)
Q Consensus 258 ~~r~lsi~~~~~~~~~~~~~~~~~~~lRtL~~~~~~--~~-~~~~~~~~~ 304 (308)
.+||+|+++++... ......+++||||+++.+. .. ++..||..|
T Consensus 524 ~~rr~s~~~~~~~~---~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m 570 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEH---IAGSSENPKLRTLLLQRNSDWLLEISGEFFRSL 570 (889)
T ss_pred heeEEEEeccchhh---ccCCCCCCccceEEEeecchhhhhcCHHHHhhC
Confidence 78999999986544 2256778899999998864 33 889998866
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=4.2e-38 Score=278.80 Aligned_cols=229 Identities=34% Similarity=0.551 Sum_probs=181.1
Q ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC---CCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHhhcC
Q 039430 1 HFELKIWICVSVDFGERQIMTKIINSITGENQ---SNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLG 77 (308)
Q Consensus 1 ~Fd~~~WV~vs~~~~~~~ll~~il~~l~~~~~---~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~ 77 (308)
+|+.++||.++...+..+++.+|+++++.... ...+.+++...+++.|+++++||||||||+. ..|+.+...++.
T Consensus 48 ~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~ 125 (287)
T PF00931_consen 48 RFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPS 125 (287)
T ss_dssp CCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HC
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccchhhhccccceeeeeeeccc--cccccccccccc
Confidence 69999999999999999999999999976532 5678888999999999999999999999987 579999888888
Q ss_pred CCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 78 GANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 78 ~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
...||+||||||+..++..++.. ...+++++|+++||++||++.++.......+.+++.+++|+++|+|+||||+++|
T Consensus 126 ~~~~~kilvTTR~~~v~~~~~~~--~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a 203 (287)
T PF00931_consen 126 FSSGSKILVTTRDRSVAGSLGGT--DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIA 203 (287)
T ss_dssp HHSS-EEEEEESCGGGGTTHHSC--EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHH
T ss_pred ccccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88899999999999998877641 2789999999999999999999876522344566789999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHhhhccccc---cccCccchhhhhhhcCCChhhhHHHhhhhcCCCCceeecccccceeEEchhH
Q 039430 158 SLLYDSTDEHFWEYVRDNEIWRLE---QKESGILPALRLSYDQLPPHLKQCVAYCSIFPKDFEFDSYSLLFYFKMHDLM 233 (308)
Q Consensus 158 ~~L~~~~~~~~w~~~~~~~~~~~~---~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~l~~~~~mHdlv 233 (308)
++|+.+.+..+|+.+.+....... .....+..++.+||+.||+++|+||+|||+||+++.|+++.+...|..++++
T Consensus 204 ~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i 282 (287)
T PF00931_consen 204 SYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFI 282 (287)
T ss_dssp HHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHT
T ss_pred ccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCC
Confidence 999776677889988876554432 2346789999999999999999999999999999999999887666665554
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=9e-32 Score=276.77 Aligned_cols=239 Identities=17% Similarity=0.250 Sum_probs=188.0
Q ss_pred HHHHHHcCCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchhhHhHhh
Q 039430 42 KVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFM 121 (308)
Q Consensus 42 ~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~ 121 (308)
..+++.|+++|+||||||||+. ..|+.+.......++||+||||||+..++..++.. ++|+++.|+.++||+||+
T Consensus 287 ~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~---~~~~v~~l~~~ea~~LF~ 361 (1153)
T PLN03210 287 GAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGID---HIYEVCLPSNELALEMFC 361 (1153)
T ss_pred HHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCC---eEEEecCCCHHHHHHHHH
Confidence 4577889999999999999987 56888887766678999999999999999877665 899999999999999999
Q ss_pred hhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhhhcCCCCHHHHHHHHhhhccccccccCccchhhhhhhcCCCh-
Q 039430 122 KCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPP- 200 (308)
Q Consensus 122 ~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~- 200 (308)
+.||+.... ...+.+++++|+++|+|+||||+++|+.|+.+ +..+|+.+++..... .+..+..+|++||+.|++
T Consensus 362 ~~Af~~~~~-~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~---~~~~I~~~L~~SYd~L~~~ 436 (1153)
T PLN03210 362 RSAFKKNSP-PDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNG---LDGKIEKTLRVSYDGLNNK 436 (1153)
T ss_pred HHhcCCCCC-cHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhC---ccHHHHHHHHHhhhccCcc
Confidence 999976432 35688999999999999999999999999974 789999998765442 235799999999999987
Q ss_pred hhhHHHhhhhcCCCCceeecccc-------------------------cceeEEchhHHHHHHHHhcccc-------EEE
Q 039430 201 HLKQCVAYCSIFPKDFEFDSYSL-------------------------LFYFKMHDLMHDLALLVAKDEF-------LVV 248 (308)
Q Consensus 201 ~~k~cfl~~s~fp~~~~i~~~~l-------------------------~~~~~mHdlv~~~a~~~~~~e~-------~~~ 248 (308)
..|.||+++|.||.+..++.... ...++||||+|++|+++++++. +..
T Consensus 437 ~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~ 516 (1153)
T PLN03210 437 KDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLV 516 (1153)
T ss_pred chhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEe
Confidence 59999999999998866543211 3579999999999999987663 222
Q ss_pred eCC-------CCCCCCCeEEEEEEecCCCcccc-ccccCCCCCcceEEEc
Q 039430 249 NSD-------CQSIPKRVRHLSFAVANASRNDF-SSLLSDLGRVRTIFFS 290 (308)
Q Consensus 249 ~~~-------~~~~~~~~r~lsi~~~~~~~~~~-~~~~~~~~~lRtL~~~ 290 (308)
... ....+.+++++++..+......+ ......+++||.|-+.
T Consensus 517 ~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~ 566 (1153)
T PLN03210 517 DAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFY 566 (1153)
T ss_pred CHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEe
Confidence 211 12334678999888664432111 1235567788877663
No 4
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.88 E-value=6.9e-08 Score=98.63 Aligned_cols=225 Identities=11% Similarity=0.092 Sum_probs=135.7
Q ss_pred CCeEEEEEeCC-CCCHHHHHHHHHHHhcCCCC-------------CCCCHHHHHHHHHHHcC--CceEEEEEecCCCCCh
Q 039430 2 FELKIWICVSV-DFGERQIMTKIINSITGENQ-------------SNLDPDRLQKVLRDSFN--GKRYLLVMDYVWNEDL 65 (308)
Q Consensus 2 Fd~~~WV~vs~-~~~~~~ll~~il~~l~~~~~-------------~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~ 65 (308)
++.++|+++.. .-+...+...++..+..... ...+...+...+...+. +.+++|||||+...+.
T Consensus 56 ~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~ 135 (903)
T PRK04841 56 KNNLGWYSLDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITN 135 (903)
T ss_pred CCCeEEEecCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCC
Confidence 34588999964 44666777777777741110 11223334444444443 5789999999976543
Q ss_pred HHHH-HHHHhhcCCCCCcEEEEEecchHHH--hhhccCCCCceeecC----CCCchhhHhHhhhhhcccCCCCCchHHHH
Q 039430 66 EAWR-KFKSLLLGGANGSKILVTTRSRKVA--SIMGTKGGSTGYNLQ----GLPFEDCLSLFMKCACKEERDKHPNLIKI 138 (308)
Q Consensus 66 ~~~~-~l~~~l~~~~~gs~IlvTTR~~~va--~~~~~~~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~ 138 (308)
.... .+...+.....+.++|||||...-. ...... +....+. +|+.+|+..||....+.. --.+.
T Consensus 136 ~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~--~~~~~l~~~~l~f~~~e~~~ll~~~~~~~------~~~~~ 207 (903)
T PRK04841 136 PEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVR--DQLLEIGSQQLAFDHQEAQQFFDQRLSSP------IEAAE 207 (903)
T ss_pred hHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhc--CcceecCHHhCCCCHHHHHHHHHhccCCC------CCHHH
Confidence 3333 3444444455667888999984211 111111 1344555 999999999998766322 12345
Q ss_pred HHHHHHHcCCChHHHHHHhhhhcCCCCHHHHHHHHhhhcccccc-ccCccchhhhh-hhcCCChhhhHHHhhhhcCCCCc
Q 039430 139 AKEIVKKCGGILLAVKTLGSLLYDSTDEHFWEYVRDNEIWRLEQ-KESGILPALRL-SYDQLPPHLKQCVAYCSIFPKDF 216 (308)
Q Consensus 139 ~~~I~~~c~glPLai~~ig~~L~~~~~~~~w~~~~~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~cfl~~s~fp~~~ 216 (308)
+.+|.+.|+|.|+++..++..++....... ... ..+.. ....+...+.- -++.||++.+..+...|+++. +
T Consensus 208 ~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~-~ 280 (903)
T PRK04841 208 SSRLCDDVEGWATALQLIALSARQNNSSLH--DSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRS-M 280 (903)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCCchh--hhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhccccc-C
Confidence 788999999999999999887754322100 000 11111 12234443333 378999999999999999873 1
Q ss_pred eee-------cc------------cc--------cceeEEchhHHHHHHHHh
Q 039430 217 EFD-------SY------------SL--------LFYFKMHDLMHDLALLVA 241 (308)
Q Consensus 217 ~i~-------~~------------~l--------~~~~~mHdlv~~~a~~~~ 241 (308)
... .. .+ ...|+.|++++++++...
T Consensus 281 ~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 281 NDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred CHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 110 00 00 236899999999998765
No 5
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.96 E-value=0.00092 Score=58.41 Aligned_cols=148 Identities=17% Similarity=0.108 Sum_probs=92.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHH----H-cCCceEEEEEecCCCCChHHHHHHHHhhcC---CCCCc
Q 039430 11 SVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRD----S-FNGKRYLLVMDYVWNEDLEAWRKFKSLLLG---GANGS 82 (308)
Q Consensus 11 s~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~----~-L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~---~~~gs 82 (308)
....+..+++..|+..++... ...+...+...+.+ . ..+++.+||+||++.-....++.+...... +....
T Consensus 79 ~~~~~~~~~l~~i~~~lG~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~ 157 (269)
T TIGR03015 79 NTRVDAEDLLRMVAADFGLET-EGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLL 157 (269)
T ss_pred CCCCCHHHHHHHHHHHcCCCC-CCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeE
Confidence 345677889999998886432 22333333333333 2 267889999999998766666666543321 12223
Q ss_pred EEEEEecchHHHhhhccC-------CCCceeecCCCCchhhHhHhhhhhcccCCCCC-chHHHHHHHHHHHcCCChHHHH
Q 039430 83 KILVTTRSRKVASIMGTK-------GGSTGYNLQGLPFEDCLSLFMKCACKEERDKH-PNLIKIAKEIVKKCGGILLAVK 154 (308)
Q Consensus 83 ~IlvTTR~~~va~~~~~~-------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~-~~l~~~~~~I~~~c~glPLai~ 154 (308)
.|++|.... ....+... .....+++++++.+|..+++...+...+.... .-..+..+.|++.++|.|..|.
T Consensus 158 ~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~ 236 (269)
T TIGR03015 158 QIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLIN 236 (269)
T ss_pred EEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHH
Confidence 455655432 22111100 00146789999999999998877653321111 1234788999999999999999
Q ss_pred HHhhhh
Q 039430 155 TLGSLL 160 (308)
Q Consensus 155 ~ig~~L 160 (308)
.++..+
T Consensus 237 ~l~~~~ 242 (269)
T TIGR03015 237 ILCDRL 242 (269)
T ss_pred HHHHHH
Confidence 988876
No 6
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.67 E-value=0.00068 Score=66.50 Aligned_cols=228 Identities=14% Similarity=0.150 Sum_probs=140.7
Q ss_pred eEEEEEeCCC-CCHHHHHHHHHHHhcCCC-------------CCCCCHHHHHHHHHHHcCC--ceEEEEEecCCCCChHH
Q 039430 4 LKIWICVSVD-FGERQIMTKIINSITGEN-------------QSNLDPDRLQKVLRDSFNG--KRYLLVMDYVWNEDLEA 67 (308)
Q Consensus 4 ~~~WV~vs~~-~~~~~ll~~il~~l~~~~-------------~~~~~~~~~~~~l~~~L~~--kr~LlVLDdv~~~~~~~ 67 (308)
.+.|.+.+.. -+....+..++..++... ....+...+.+.+...|.. +...+||||.--.....
T Consensus 66 ~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~ 145 (894)
T COG2909 66 AVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPA 145 (894)
T ss_pred ceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCccc
Confidence 4789998765 467788888888876321 2233455566777766654 68999999975432222
Q ss_pred H-HHHHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecC----CCCchhhHhHhhhhhcccCCCCCchHHHHHHHH
Q 039430 68 W-RKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQ----GLPFEDCLSLFMKCACKEERDKHPNLIKIAKEI 142 (308)
Q Consensus 68 ~-~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I 142 (308)
. ..+...+.....+-..|||||+..-.....-.-.+...++. .++.+|+-++|....+. +--...++.+
T Consensus 146 l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l------~Ld~~~~~~L 219 (894)
T COG2909 146 LHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL------PLDAADLKAL 219 (894)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC------CCChHHHHHH
Confidence 2 23444455566788899999986443221111011233333 67899999999876521 2223457889
Q ss_pred HHHcCCChHHHHHHhhhhcCCCCHHHHHHHHhhhccccccccCccch-hhhhhhcCCChhhhHHHhhhhcCCCCc-----
Q 039430 143 VKKCGGILLAVKTLGSLLYDSTDEHFWEYVRDNEIWRLEQKESGILP-ALRLSYDQLPPHLKQCVAYCSIFPKDF----- 216 (308)
Q Consensus 143 ~~~c~glPLai~~ig~~L~~~~~~~~w~~~~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cfl~~s~fp~~~----- 216 (308)
.+..+|-+-|+..++=.++.+.+.+.--..+.. ....+.. ...--++.||+++|..++-||+++.=.
T Consensus 220 ~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG-------~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f~~eL~~ 292 (894)
T COG2909 220 YDRTEGWAAALQLIALALRNNTSAEQSLRGLSG-------AASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRFNDELCN 292 (894)
T ss_pred HhhcccHHHHHHHHHHHccCCCcHHHHhhhccc-------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHhhHHHHH
Confidence 999999999999999888844433322111110 0001111 122236789999999999999986311
Q ss_pred ---------------------eeecccccceeEEchhHHHHHHHHhccc
Q 039430 217 ---------------------EFDSYSLLFYFKMHDLMHDLALLVAKDE 244 (308)
Q Consensus 217 ---------------------~i~~~~l~~~~~mHdlv~~~a~~~~~~e 244 (308)
.++-+.-...|+.|.|..||.+.....+
T Consensus 293 ~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~~ 341 (894)
T COG2909 293 ALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQRE 341 (894)
T ss_pred HHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhccc
Confidence 1111111678999999999998766543
No 7
>PF05729 NACHT: NACHT domain
Probab=97.33 E-value=0.0018 Score=51.76 Aligned_cols=76 Identities=21% Similarity=0.218 Sum_probs=51.0
Q ss_pred CCceEEEEEecCCCCChH-------HHHHHH-HhhcC-CCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchhhHhH
Q 039430 49 NGKRYLLVMDYVWNEDLE-------AWRKFK-SLLLG-GANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSL 119 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~-------~~~~l~-~~l~~-~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~L 119 (308)
..++++||||++++-... .+..+. ..++. ...+++++||+|................+.+.+|++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 568999999999764321 133333 33333 357899999999877733221111125799999999999999
Q ss_pred hhhhh
Q 039430 120 FMKCA 124 (308)
Q Consensus 120 f~~~a 124 (308)
+.+..
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 97765
No 8
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=97.32 E-value=0.036 Score=51.27 Aligned_cols=195 Identities=12% Similarity=0.086 Sum_probs=109.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCC--CCCCCHHHHHHHHHHHcC--CceEEEEEecCCCCC----hHHHHHHHHhhc
Q 039430 5 KIWICVSVDFGERQIMTKIINSITGEN--QSNLDPDRLQKVLRDSFN--GKRYLLVMDYVWNED----LEAWRKFKSLLL 76 (308)
Q Consensus 5 ~~WV~vs~~~~~~~ll~~il~~l~~~~--~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~----~~~~~~l~~~l~ 76 (308)
.++|+.....+...++.+|++++.+.. ....+.+++...+.+.+. ++..+||||+++.-. .+.+..+...+.
T Consensus 88 ~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~ 167 (394)
T PRK00411 88 YVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHE 167 (394)
T ss_pred EEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhh
Confidence 456666666778899999999997532 233456777788888775 456899999997631 122333333332
Q ss_pred CCCCCcE--EEEEecchHHHhhhc----cCCCCceeecCCCCchhhHhHhhhhhccc--CCCCCc-hHHHHHHHHHHHcC
Q 039430 77 GGANGSK--ILVTTRSRKVASIMG----TKGGSTGYNLQGLPFEDCLSLFMKCACKE--ERDKHP-NLIKIAKEIVKKCG 147 (308)
Q Consensus 77 ~~~~gs~--IlvTTR~~~va~~~~----~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~--~~~~~~-~l~~~~~~I~~~c~ 147 (308)
.. .+++ +|.++....+..... .......+.+.+++.++..+++...+... .....+ .++.+++......|
T Consensus 168 ~~-~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 246 (394)
T PRK00411 168 EY-PGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHG 246 (394)
T ss_pred cc-CCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcC
Confidence 22 2333 566666544333221 11112568999999999999998876322 111122 23333333333356
Q ss_pred CChHHHHHHhhhh--c--C---CCCHHHHHHHHhhhccccccccCccchhhhhhhcCCChhhhHHHhhhh
Q 039430 148 GILLAVKTLGSLL--Y--D---STDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVAYCS 210 (308)
Q Consensus 148 glPLai~~ig~~L--~--~---~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s 210 (308)
..+.|+.++-... + . .-+.+..+.+.+... .....-.+..||.+.|..+..++
T Consensus 247 d~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~----------~~~~~~~~~~L~~~~k~~L~ai~ 306 (394)
T PRK00411 247 DARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE----------IVHLSEVLRTLPLHEKLLLRAIV 306 (394)
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH----------HHHHHHHHhcCCHHHHHHHHHHH
Confidence 6888877764322 1 1 123444444433220 12233457788888777655444
No 9
>PRK06893 DNA replication initiation factor; Validated
Probab=96.87 E-value=0.0056 Score=52.31 Aligned_cols=100 Identities=16% Similarity=0.145 Sum_probs=65.2
Q ss_pred EEEEEecCCCCC-hHHHHH-HHHhhcCC-CCCcEEEE-Eecc---------hHHHhhhccCCCCceeecCCCCchhhHhH
Q 039430 53 YLLVMDYVWNED-LEAWRK-FKSLLLGG-ANGSKILV-TTRS---------RKVASIMGTKGGSTGYNLQGLPFEDCLSL 119 (308)
Q Consensus 53 ~LlVLDdv~~~~-~~~~~~-l~~~l~~~-~~gs~Ilv-TTR~---------~~va~~~~~~~~~~~~~l~~L~~~ea~~L 119 (308)
-+|||||+|... ...|.. +...+... ..|+.+|| |+.. +++...+... .++++++++.++.+++
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g---~~~~l~~pd~e~~~~i 169 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWG---EIYQLNDLTDEQKIIV 169 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcC---CeeeCCCCCHHHHHHH
Confidence 499999998732 245653 44444322 24555655 4443 3566555443 7899999999999999
Q ss_pred hhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhh
Q 039430 120 FMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGS 158 (308)
Q Consensus 120 f~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~ 158 (308)
+++.+...+...+ +++..-|++.+.|..-++..+-.
T Consensus 170 L~~~a~~~~l~l~---~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 170 LQRNAYQRGIELS---DEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HHHHHHHcCCCCC---HHHHHHHHHhccCCHHHHHHHHH
Confidence 9999875543322 36678899999877655554433
No 10
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.75 E-value=0.015 Score=49.05 Aligned_cols=102 Identities=20% Similarity=0.150 Sum_probs=54.4
Q ss_pred ceEEEEEecCCCCC------hHHHHHHHHhhcC---CCCCcEEEEEecchHHHhh-hc----cCCCCceeecCCCCchhh
Q 039430 51 KRYLLVMDYVWNED------LEAWRKFKSLLLG---GANGSKILVTTRSRKVASI-MG----TKGGSTGYNLQGLPFEDC 116 (308)
Q Consensus 51 kr~LlVLDdv~~~~------~~~~~~l~~~l~~---~~~gs~IlvTTR~~~va~~-~~----~~~~~~~~~l~~L~~~ea 116 (308)
++.+||+||+..-. ..-...+...+.. ..+.+ +++++.+..+... .. .......+.+++|+.+++
T Consensus 118 ~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~ 196 (234)
T PF01637_consen 118 KKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS-IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEA 196 (234)
T ss_dssp CCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE-EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHH
T ss_pred CcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce-EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHH
Confidence 45999999996643 1122333343333 33344 4555554444433 10 001114599999999999
Q ss_pred HhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 039430 117 LSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKT 155 (308)
Q Consensus 117 ~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 155 (308)
++++...+-.. ... +.-.+...+|...+||.|..|..
T Consensus 197 ~~~~~~~~~~~-~~~-~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 197 REFLKELFKEL-IKL-PFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp HHHHHHHHHCC--------HHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHh-hcc-cCCHHHHHHHHHHhCCCHHHHhc
Confidence 99999876433 111 22345669999999999988764
No 11
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.60 E-value=0.45 Score=43.43 Aligned_cols=148 Identities=11% Similarity=0.118 Sum_probs=84.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhc--CCC--CCCCCHHHHHHHHHHHcC--CceEEEEEecCCCCC---hHHHHHHHHhh
Q 039430 5 KIWICVSVDFGERQIMTKIINSIT--GEN--QSNLDPDRLQKVLRDSFN--GKRYLLVMDYVWNED---LEAWRKFKSLL 75 (308)
Q Consensus 5 ~~WV~vs~~~~~~~ll~~il~~l~--~~~--~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~---~~~~~~l~~~l 75 (308)
.+||......+...++..|++++. +.. ....+..++...+.+.+. +++++||||+++.-. .+....+....
T Consensus 77 ~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~ 156 (365)
T TIGR02928 77 TVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRAR 156 (365)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccc
Confidence 567777777778899999999984 221 122345556666666664 568899999997641 11122222221
Q ss_pred -cCCC--CCcEEEEEecchHHHhhh----ccCCCCceeecCCCCchhhHhHhhhhhccc--CCCCCchHHHHHHHHHHHc
Q 039430 76 -LGGA--NGSKILVTTRSRKVASIM----GTKGGSTGYNLQGLPFEDCLSLFMKCACKE--ERDKHPNLIKIAKEIVKKC 146 (308)
Q Consensus 76 -~~~~--~gs~IlvTTR~~~va~~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~--~~~~~~~l~~~~~~I~~~c 146 (308)
.... ....+|.+|........+ ........+.+.+++.++..+++...+... .....++..+.+.+++...
T Consensus 157 ~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~ 236 (365)
T TIGR02928 157 SNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQE 236 (365)
T ss_pred cccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHh
Confidence 1111 223445555444332211 111112468999999999999998876421 1112233344556677777
Q ss_pred CCChHH
Q 039430 147 GGILLA 152 (308)
Q Consensus 147 ~glPLa 152 (308)
.|.|-.
T Consensus 237 ~Gd~R~ 242 (365)
T TIGR02928 237 HGDARK 242 (365)
T ss_pred cCCHHH
Confidence 787743
No 12
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.23 E-value=0.014 Score=44.75 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=61.8
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCce-EEEEEecCCCC-ChHHHHHHHHhhcCCCCC
Q 039430 4 LKIWICVSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGKR-YLLVMDYVWNE-DLEAWRKFKSLLLGGANG 81 (308)
Q Consensus 4 ~~~WV~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~-~~~~~~~l~~~l~~~~~g 81 (308)
.++|+.++...+...+...|+++++.......+.+++.+.+.+.+...+ .+||+|++..- +...++.+..... ..+
T Consensus 39 ~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~ 116 (131)
T PF13401_consen 39 DVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESN 116 (131)
T ss_dssp EEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCB
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCC
Confidence 4679998888899999999999998665555678888888888887654 59999999665 4444455544333 566
Q ss_pred cEEEEEecc
Q 039430 82 SKILVTTRS 90 (308)
Q Consensus 82 s~IlvTTR~ 90 (308)
.+||+..+.
T Consensus 117 ~~vvl~G~~ 125 (131)
T PF13401_consen 117 IKVVLVGTP 125 (131)
T ss_dssp EEEEEEESS
T ss_pred CeEEEEECh
Confidence 677777654
No 13
>COG3903 Predicted ATPase [General function prediction only]
Probab=96.06 E-value=0.0031 Score=57.28 Aligned_cols=173 Identities=17% Similarity=0.185 Sum_probs=114.0
Q ss_pred HHHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCch-hhH
Q 039430 39 RLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFE-DCL 117 (308)
Q Consensus 39 ~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~-ea~ 117 (308)
.....+.....++|.++|+||...-- +.-..+...+-.+...-.|+.|+|....... .....+..|+.. ++-
T Consensus 76 ~~~~~~~~~~~~rr~llvldncehl~-~~~a~~i~all~~~~~~~~~atsre~~l~~g------e~~~~~~~L~~~d~a~ 148 (414)
T COG3903 76 SAVDTLVRRIGDRRALLVLDNCEHLL-DACAALIVALLGACPRLAILATSREAILVAG------EVHRRVPSLSLFDEAI 148 (414)
T ss_pred HHHHHHHHHHhhhhHHHHhcCcHHHH-HHHHHHHHHHHccchhhhhHHHhHhhhcccc------cccccCCccccCCchh
Confidence 34557788889999999999984321 2223344455555666678889887644322 156788888876 688
Q ss_pred hHhhhhhccc--CCCCCchHHHHHHHHHHHcCCChHHHHHHhhhhcCCCCHH-------HHHHHHhhhccccccccCccc
Q 039430 118 SLFMKCACKE--ERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEH-------FWEYVRDNEIWRLEQKESGIL 188 (308)
Q Consensus 118 ~Lf~~~a~~~--~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L~~~~~~~-------~w~~~~~~~~~~~~~~~~~i~ 188 (308)
++|...+... ...........+.+|.++..|.|++|...++..+.-.... .|..+.+- ............
T Consensus 149 ~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~ 227 (414)
T COG3903 149 ELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLR 227 (414)
T ss_pred HHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhcc
Confidence 8887766433 1111223456789999999999999999999887643222 22222111 111111224577
Q ss_pred hhhhhhhcCCChhhhHHHhhhhcCCCCceee
Q 039430 189 PALRLSYDQLPPHLKQCVAYCSIFPKDFEFD 219 (308)
Q Consensus 189 ~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~ 219 (308)
..+.+||.-|..-.+-.|.-++.|...+.-.
T Consensus 228 asl~ws~~lLtgwe~~~~~rLa~~~g~f~~~ 258 (414)
T COG3903 228 ASLDWSYALLTGWERALFGRLAVFVGGFDLG 258 (414)
T ss_pred chhhhhhHhhhhHHHHHhcchhhhhhhhccc
Confidence 8999999999998888898888887665543
No 14
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.01 E-value=0.15 Score=45.70 Aligned_cols=98 Identities=13% Similarity=0.095 Sum_probs=69.1
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchHHH-hhhccCCCCceeecCCCCchhhHhHhhhhhccc
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVA-SIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKE 127 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 127 (308)
.+++-++|+|++...+...++.+...+.....++.+|++|.+.+.. ...... ...+.+.++++++....+.+...+
T Consensus 91 ~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SR--c~~~~~~~~~~~~~~~~l~~~~~~- 167 (313)
T PRK05564 91 EGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSR--CQIYKLNRLSKEEIEKFISYKYND- 167 (313)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhh--ceeeeCCCcCHHHHHHHHHHHhcC-
Confidence 3456678888877666678999999999888899999888765432 222221 268999999999998888665411
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHHH
Q 039430 128 ERDKHPNLIKIAKEIVKKCGGILLAVKT 155 (308)
Q Consensus 128 ~~~~~~~l~~~~~~I~~~c~glPLai~~ 155 (308)
.-.+.+..++..++|.|.-+..
T Consensus 168 ------~~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 168 ------IKEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred ------CCHHHHHHHHHHcCCCHHHHHH
Confidence 1123467889999998875543
No 15
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.93 E-value=0.62 Score=38.22 Aligned_cols=91 Identities=13% Similarity=0.098 Sum_probs=65.1
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecch-HHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSR-KVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+.+-++|+|++..-.....+.+...+......+.+|++|++. .+...+... ..++.+.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr--~~~~~~~~~~~~~~~~~l~~~--g-- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSR--CQVLPFPPLSEEALLQWLIRQ--G-- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhh--cEEeeCCCCCHHHHHHHHHHc--C--
Confidence 467799999997766566778888887666666777777653 333322221 268999999999998888776 1
Q ss_pred CCCCchHHHHHHHHHHHcCCChH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILL 151 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPL 151 (308)
. . .+.+..|++.++|.|.
T Consensus 169 i--~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 I--S---EEAAELLLALAGGSPG 186 (188)
T ss_pred C--C---HHHHHHHHHHcCCCcc
Confidence 1 1 3568899999999885
No 16
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=95.53 E-value=0.19 Score=46.00 Aligned_cols=99 Identities=13% Similarity=0.115 Sum_probs=69.7
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchH-HHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRK-VASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+.+-++|+|++...+......|...+..-..++.+|++|.+.. +...... ....+.+.+++.++..+++.+.....
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~~~~~- 216 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRS--RCRKLRLRPLAPEDVIDALAAAGPDL- 216 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhc--cceEEECCCCCHHHHHHHHHHhcccC-
Confidence 4567999999988877778888888877666677777776653 3322222 22689999999999999998764211
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
+ .+....++..++|.|+....+.
T Consensus 217 ----~--~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 217 ----P--DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred ----C--HHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1122678999999998665543
No 17
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.44 E-value=0.028 Score=50.75 Aligned_cols=130 Identities=14% Similarity=0.006 Sum_probs=73.5
Q ss_pred CcEEEEEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhhh
Q 039430 81 GSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLL 160 (308)
Q Consensus 81 gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L 160 (308)
.+-|..||+...+........ ...+.+++++.++..+++.+.+...+.... .+.+..|++.|+|.|-.+..+...+
T Consensus 151 ~~li~at~~~~~l~~~L~sRf-~~~~~l~~~~~~e~~~il~~~~~~~~~~~~---~~~~~~ia~~~~G~pR~a~~~l~~~ 226 (328)
T PRK00080 151 FTLIGATTRAGLLTSPLRDRF-GIVQRLEFYTVEELEKIVKRSARILGVEID---EEGALEIARRSRGTPRIANRLLRRV 226 (328)
T ss_pred ceEEeecCCcccCCHHHHHhc-CeeeecCCCCHHHHHHHHHHHHHHcCCCcC---HHHHHHHHHHcCCCchHHHHHHHHH
Confidence 345666777554443322211 156899999999999999988865443322 3568899999999995444444322
Q ss_pred cCCCCHHHHHHHHhhhccccccccCccchhhhhhhcCCChhhhHHHh-hhhcCCCCceeeccc
Q 039430 161 YDSTDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVA-YCSIFPKDFEFDSYS 222 (308)
Q Consensus 161 ~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-~~s~fp~~~~i~~~~ 222 (308)
. .|....+.. .-....-......+...+..|++..+..+. ....|+.+ .+..+.
T Consensus 227 ~------~~a~~~~~~-~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~ 281 (328)
T PRK00080 227 R------DFAQVKGDG-VITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDT 281 (328)
T ss_pred H------HHHHHcCCC-CCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHH
Confidence 1 222111000 000000012234456677788877766664 66677655 344433
No 18
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.34 E-value=1.6 Score=40.82 Aligned_cols=106 Identities=17% Similarity=0.167 Sum_probs=65.9
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEE--EecchHHH--hhhccCCCCceeecCCCCchhhHhHhhhhh
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILV--TTRSRKVA--SIMGTKGGSTGYNLQGLPFEDCLSLFMKCA 124 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv--TTR~~~va--~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 124 (308)
.+++.+|++|+++.-.....+.+...+.. |..+++ ||.+.... ..+... ..++.+.+++.++...++.+.+
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le~---~~iilI~att~n~~~~l~~aL~SR--~~~~~~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVED---GTITLIGATTENPSFEVNPALLSR--AQVFELKPLSEEDIEQLLKRAL 164 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhhc---CcEEEEEeCCCChhhhccHHHhcc--ceeeEeCCCCHHHHHHHHHHHH
Confidence 45788999999987655555666665543 444554 34443221 111111 2678999999999999998865
Q ss_pred cccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhh
Q 039430 125 CKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSL 159 (308)
Q Consensus 125 ~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~ 159 (308)
.........-..+....|++.|+|.|..+..+...
T Consensus 165 ~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~ 199 (413)
T PRK13342 165 EDKERGLVELDDEALDALARLANGDARRALNLLEL 199 (413)
T ss_pred HHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33211000222456788999999998776554433
No 19
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.15 E-value=0.15 Score=45.37 Aligned_cols=104 Identities=13% Similarity=0.027 Sum_probs=63.6
Q ss_pred ceEEEEEecCCCCChHHHHHHHHhhcC-------------------CCCCcEEEEEecchHHHhhhccCCCCceeecCCC
Q 039430 51 KRYLLVMDYVWNEDLEAWRKFKSLLLG-------------------GANGSKILVTTRSRKVASIMGTKGGSTGYNLQGL 111 (308)
Q Consensus 51 kr~LlVLDdv~~~~~~~~~~l~~~l~~-------------------~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L 111 (308)
...+|++|++..-.....+.+...+.. ..+.+-|..||+...+........ ...+.++++
T Consensus 81 ~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~-~~~~~l~~l 159 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRF-GIILRLEFY 159 (305)
T ss_pred cCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhc-ceEEEeCCC
Confidence 456889998865433223333333211 112445566777654443322211 156899999
Q ss_pred CchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhh
Q 039430 112 PFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGS 158 (308)
Q Consensus 112 ~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~ 158 (308)
+.++..+++.+.+...+...+ .+....|++.|+|.|-.+..++.
T Consensus 160 ~~~e~~~il~~~~~~~~~~~~---~~al~~ia~~~~G~pR~~~~ll~ 203 (305)
T TIGR00635 160 TVEELAEIVSRSAGLLNVEIE---PEAALEIARRSRGTPRIANRLLR 203 (305)
T ss_pred CHHHHHHHHHHHHHHhCCCcC---HHHHHHHHHHhCCCcchHHHHHH
Confidence 999999999988864433222 35678899999999966655544
No 20
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=94.92 E-value=0.52 Score=45.13 Aligned_cols=100 Identities=20% Similarity=0.246 Sum_probs=70.8
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEE-EEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhccc
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKIL-VTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKE 127 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Il-vTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 127 (308)
.+++-++|+|+++.-....++.|...+......+.+| +||+...+...+... ...+++.+++.++....+.+.+...
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SR--c~~~ef~~ls~~el~~~L~~i~~~e 203 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISR--CQRYDLRRLSFEEIFKLLEYITKQE 203 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhc--ceEEEccCCCHHHHHHHHHHHHHHc
Confidence 4567799999998876677888888887665666655 455556665544332 2679999999999999999888543
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHH
Q 039430 128 ERDKHPNLIKIAKEIVKKCGGILLAV 153 (308)
Q Consensus 128 ~~~~~~~l~~~~~~I~~~c~glPLai 153 (308)
+... ..+....|++.++|.+--+
T Consensus 204 gi~i---e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 204 NLKT---DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred CCCC---CHHHHHHHHHHcCCCHHHH
Confidence 3222 2345677999999977444
No 21
>PRK09087 hypothetical protein; Validated
Probab=94.51 E-value=0.41 Score=40.77 Aligned_cols=96 Identities=13% Similarity=0.076 Sum_probs=62.3
Q ss_pred EEEEEecCCCC--ChHHHHHHHHhhcCCCCCcEEEEEecc---------hHHHhhhccCCCCceeecCCCCchhhHhHhh
Q 039430 53 YLLVMDYVWNE--DLEAWRKFKSLLLGGANGSKILVTTRS---------RKVASIMGTKGGSTGYNLQGLPFEDCLSLFM 121 (308)
Q Consensus 53 ~LlVLDdv~~~--~~~~~~~l~~~l~~~~~gs~IlvTTR~---------~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~ 121 (308)
-+|++||+... +.+.+-.+...+. ..|..||+|++. +++...+... .++++++++.++-..+++
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~g---l~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAA---TVVEIGEPDDALLSQVIF 163 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCC---ceeecCCCCHHHHHHHHH
Confidence 37888999542 2233333333333 236679998873 3343444433 789999999999999999
Q ss_pred hhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 039430 122 KCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTL 156 (308)
Q Consensus 122 ~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~i 156 (308)
+.+-..+...+ +++..-|++.+.|..-++..+
T Consensus 164 ~~~~~~~~~l~---~ev~~~La~~~~r~~~~l~~~ 195 (226)
T PRK09087 164 KLFADRQLYVD---PHVVYYLVSRMERSLFAAQTI 195 (226)
T ss_pred HHHHHcCCCCC---HHHHHHHHHHhhhhHHHHHHH
Confidence 88854433222 467788888888877666643
No 22
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.22 E-value=0.26 Score=41.61 Aligned_cols=101 Identities=14% Similarity=0.154 Sum_probs=60.9
Q ss_pred EEEEEecCCCCChH-HH-HHHHHhhcC-CCCCcEEEEEecchH---------HHhhhccCCCCceeecCCCCchhhHhHh
Q 039430 53 YLLVMDYVWNEDLE-AW-RKFKSLLLG-GANGSKILVTTRSRK---------VASIMGTKGGSTGYNLQGLPFEDCLSLF 120 (308)
Q Consensus 53 ~LlVLDdv~~~~~~-~~-~~l~~~l~~-~~~gs~IlvTTR~~~---------va~~~~~~~~~~~~~l~~L~~~ea~~Lf 120 (308)
-+||+||+..-... .| +.+...+.. ...+.++|+||+... +...+.. ...+.+.+++.++...++
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~---~~~i~l~~l~~~e~~~~l 168 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAW---GLVFQLPPLSDEEKIAAL 168 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhc---CeeEecCCCCHHHHHHHH
Confidence 38999999764321 23 345444432 123447888887532 1222221 257899999999989988
Q ss_pred hhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhh
Q 039430 121 MKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSL 159 (308)
Q Consensus 121 ~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~ 159 (308)
...+-...... -.+....|++.++|.|..+..+-..
T Consensus 169 ~~~~~~~~~~~---~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 169 QSRAARRGLQL---PDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhccCCHHHHHHHHHH
Confidence 77553222221 2355677788888888777665443
No 23
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.15 E-value=2.9 Score=37.85 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=68.9
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchH-HHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRK-VASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-.......+...+......+.+|++|.+.. +...+... ...+++.++++++....+...+-..+
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr--~~~~~~~~~~~~~l~~~l~~~~~~~g 193 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSR--CQRFDFKRIPLEDIVERLKKILDKEG 193 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhh--eeEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4556899999876554567777777766556677667765443 33332221 25788999999998888887664333
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHhh
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTLGS 158 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ig~ 158 (308)
...+ .+.+..+++.++|.|..+.....
T Consensus 194 ~~i~---~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 194 IKIE---DEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred CCCC---HHHHHHHHHHcCCChHHHHHHHH
Confidence 2222 35678889999998876655443
No 24
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.07 E-value=0.41 Score=43.62 Aligned_cols=101 Identities=10% Similarity=0.114 Sum_probs=68.4
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEE-EEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKIL-VTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Il-vTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-+....+.|...+.....+..+| +|++-..+....... ...+++.+++.++...++.+.....+
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSR--c~~i~l~pl~~~~~~~~L~~~~~~~~ 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSR--CQPISLKPLDDDELKKALSHLGSSQG 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhh--ccEEEecCCCHHHHHHHHHHhhcccC
Confidence 466799999998877777777888887654455544 444444443333222 26899999999999999987431111
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
-..+.+..|++.++|.|.....+.
T Consensus 218 -----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 218 -----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred -----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 113456789999999998665544
No 25
>PF13173 AAA_14: AAA domain
Probab=93.95 E-value=0.17 Score=38.85 Aligned_cols=109 Identities=15% Similarity=0.220 Sum_probs=64.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhc--CC--CCCCCCHHH-------HHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHh
Q 039430 6 IWICVSVDFGERQIMTKIINSIT--GE--NQSNLDPDR-------LQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSL 74 (308)
Q Consensus 6 ~WV~vs~~~~~~~ll~~il~~l~--~~--~~~~~~~~~-------~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~ 74 (308)
+.+.-.+...=..+++++++.+. .. ...-.+... +.+.+.+....++.+|+||++... .+|......
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~--~~~~~~lk~ 82 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL--PDWEDALKF 82 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh--ccHHHHHHH
Confidence 33444445555667777777654 11 001111111 234444444457889999999876 457776666
Q ss_pred hcCCCCCcEEEEEecchHHHhh-hccCCC--CceeecCCCCchhh
Q 039430 75 LLGGANGSKILVTTRSRKVASI-MGTKGG--STGYNLQGLPFEDC 116 (308)
Q Consensus 75 l~~~~~gs~IlvTTR~~~va~~-~~~~~~--~~~~~l~~L~~~ea 116 (308)
+.+.....+|++|+.+...... ...... ...++|.||+..|-
T Consensus 83 l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 83 LVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred HHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 6665567899999998777643 111111 14578899987763
No 26
>PRK08727 hypothetical protein; Validated
Probab=93.46 E-value=1.9 Score=36.85 Aligned_cols=133 Identities=14% Similarity=0.061 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHcCC--ceEEEEEecCCCCC-hHHHHH-HHHhhcC-CCCCcEEEEE
Q 039430 15 GERQIMTKIINSITGENQ--SNLDPDRLQKVLRDSFNG--KRYLLVMDYVWNED-LEAWRK-FKSLLLG-GANGSKILVT 87 (308)
Q Consensus 15 ~~~~ll~~il~~l~~~~~--~~~~~~~~~~~l~~~L~~--kr~LlVLDdv~~~~-~~~~~~-l~~~l~~-~~~gs~IlvT 87 (308)
.=..+++.+..++..... .-.+..+....+.+.+.. +--+||+||+.... ...|.. +...+.. ..+|..||+|
T Consensus 53 GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~t 132 (233)
T PRK08727 53 GKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALEALEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYT 132 (233)
T ss_pred CHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHHHHhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEE
Confidence 334466666555432211 111233333333333222 33599999996432 123432 3333221 1346679999
Q ss_pred ecch---------HHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHH
Q 039430 88 TRSR---------KVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAV 153 (308)
Q Consensus 88 TR~~---------~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai 153 (308)
|+.. ++...+... .++++++++.++-..++.+.+...+... -+++..-|++.++|-.-++
T Consensus 133 s~~~p~~l~~~~~dL~SRl~~~---~~~~l~~~~~e~~~~iL~~~a~~~~l~l---~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 133 ARQMPDGLALVLPDLRSRLAQC---IRIGLPVLDDVARAAVLRERAQRRGLAL---DEAAIDWLLTHGERELAGL 201 (233)
T ss_pred CCCChhhhhhhhHHHHHHHhcC---ceEEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHhCCCCHHHH
Confidence 9852 222222222 6899999999999999998775433222 2356778888888755544
No 27
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.40 E-value=1.5 Score=43.09 Aligned_cols=115 Identities=16% Similarity=0.195 Sum_probs=75.4
Q ss_pred HHHHHHHHHHH----cCCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEE-EEecchHHHhhhccCCCCceeecCCC
Q 039430 37 PDRLQKVLRDS----FNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKIL-VTTRSRKVASIMGTKGGSTGYNLQGL 111 (308)
Q Consensus 37 ~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Il-vTTR~~~va~~~~~~~~~~~~~l~~L 111 (308)
.+++.+.+.+. ..++.-++|+|++..-+...++.|+..+..-..++++| +||....+...+... ...+.+..+
T Consensus 106 VDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSR--Cq~f~f~~l 183 (700)
T PRK12323 106 VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR--CLQFNLKQM 183 (700)
T ss_pred HHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHH--HHhcccCCC
Confidence 44444444332 23566799999998877777888888887655555554 555555554433221 167999999
Q ss_pred CchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 039430 112 PFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTL 156 (308)
Q Consensus 112 ~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~i 156 (308)
+.++..+.+.+.+...+... ..+..+.|++.++|.|.....+
T Consensus 184 s~eei~~~L~~Il~~Egi~~---d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 184 PPGHIVSHLDAILGEEGIAH---EVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred ChHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999887764332221 2345678999999988655444
No 28
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=92.70 E-value=1.2 Score=40.28 Aligned_cols=98 Identities=12% Similarity=0.116 Sum_probs=68.1
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecch-HHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSR-KVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-+....+.+...+..-..++.+|+||.+. .+....... ...+.+.+++.+++.+.+.+....
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SR--c~~~~~~~~~~~~~~~~L~~~~~~-- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSR--CQQQACPLPSNEESLQWLQQALPE-- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhh--ceeeeCCCcCHHHHHHHHHHhccc--
Confidence 344456779998887778888888887766677777777765 333333221 267999999999999888765311
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTL 156 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~i 156 (308)
...+.+..++..++|.|+....+
T Consensus 181 -----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 -----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred -----CChHHHHHHHHHcCCCHHHHHHH
Confidence 11234567789999999865544
No 29
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=92.65 E-value=2 Score=43.01 Aligned_cols=101 Identities=14% Similarity=0.138 Sum_probs=70.3
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecch-HHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSR-KVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
++.-++|||++..-+...++.|+..+..-....++|+||.+. .+...+... ...++++.++.++..+.+.+.+...+
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSR--Cq~f~Fk~Ls~eeIv~~L~~Il~~Eg 195 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSR--CLQFNLKQMPAGHIVSHLERILGEER 195 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhh--eEEEecCCcCHHHHHHHHHHHHHHcC
Confidence 455688999998877677888888887766677877777764 333222221 26799999999999999988774433
Q ss_pred CCCCchHHHHHHHHHHHcCCCh-HHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGIL-LAVKT 155 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glP-Lai~~ 155 (308)
... ..+..+.|++.++|.. -|+..
T Consensus 196 I~i---d~eAL~lIA~~A~GsmRdALsL 220 (830)
T PRK07003 196 IAF---EPQALRLLARAAQGSMRDALSL 220 (830)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 222 2356788999998854 45544
No 30
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.47 E-value=1.8 Score=41.50 Aligned_cols=99 Identities=12% Similarity=0.165 Sum_probs=68.4
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEec-chHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTR-SRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR-~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|+++......++.|...+........+|++|. ...+...+... ...+++.+++.++....+.+.+-..+
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SR--c~~~~f~~ls~~el~~~L~~i~~~eg 192 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSR--TQHFRFRRLTEEEIAGKLRRLLEAEG 192 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcc--eEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4667999999987766678888888876555555555554 34443333221 26799999999999999988775443
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAV 153 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai 153 (308)
... -.+....|++.++|.+--+
T Consensus 193 i~i---~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 193 REA---EPEALQLVARLADGAMRDA 214 (504)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHH
Confidence 222 2356788999999987544
No 31
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=92.44 E-value=1.3 Score=39.85 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=64.9
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchH-HHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRK-VASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+.+-+||+||+..-.......+...+.....++++|+||.+.. +...+... ...+.+.+++.++...++.+.+...+
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr--~~~v~~~~~~~~~~~~~l~~~~~~~~ 201 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSR--CLPLFFRAPTDDELVDVLESIAEAEG 201 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCC--ceEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3455899999976554445566666655555677888775432 22222221 25788999999999888888764433
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKT 155 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ 155 (308)
... -.+....+++.++|.+-.+..
T Consensus 202 ~~~---~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 202 VDY---DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 222 235678888999886655444
No 32
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=92.42 E-value=0.77 Score=45.22 Aligned_cols=116 Identities=21% Similarity=0.171 Sum_probs=75.2
Q ss_pred HHHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEE--EecchHH-HhhhccCCCCceeecCCCCchh
Q 039430 39 RLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILV--TTRSRKV-ASIMGTKGGSTGYNLQGLPFED 115 (308)
Q Consensus 39 ~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv--TTR~~~v-a~~~~~~~~~~~~~l~~L~~~e 115 (308)
..+..+.+.+.+++++++-|+.|..+...|+.+...+..+.+...|++ ||++... ...+... ...+.+.+++.+|
T Consensus 280 ~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR--~~~i~~~pls~ed 357 (615)
T TIGR02903 280 LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSR--CAEVFFEPLTPED 357 (615)
T ss_pred HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhc--eeEEEeCCCCHHH
Confidence 367888999999999999888887665678888877776666665666 5665432 2222111 1467899999999
Q ss_pred hHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhh
Q 039430 116 CLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSL 159 (308)
Q Consensus 116 a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~ 159 (308)
.+.++.+.+...+.... .++...|.+.+..-+-|+..++..
T Consensus 358 i~~Il~~~a~~~~v~ls---~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 358 IALIVLNAAEKINVHLA---AGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHCCCcHHHHHHHHHHH
Confidence 99999987753322111 234444555444446666655443
No 33
>PLN03025 replication factor C subunit; Provisional
Probab=92.35 E-value=8 Score=34.67 Aligned_cols=99 Identities=12% Similarity=0.120 Sum_probs=64.3
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
++.-++|||++..-.......+...+......+++++++.. ..+....... ...+++.+++.++....+.+.+-..+
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SR--c~~i~f~~l~~~~l~~~L~~i~~~eg 175 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSR--CAIVRFSRLSDQEILGRLMKVVEAEK 175 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHh--hhcccCCCCCHHHHHHHHHHHHHHcC
Confidence 35679999999876555555566666554556777776644 2222222211 15789999999999999888774433
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAV 153 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai 153 (308)
.... .+....|++.++|-.-.+
T Consensus 176 i~i~---~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 176 VPYV---PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHH
Confidence 3222 356788999999865433
No 34
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=92.15 E-value=8.1 Score=34.29 Aligned_cols=144 Identities=10% Similarity=0.085 Sum_probs=83.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCC----------CCCCHHHHHHHHHHHc-----C-CceEEEEEecCCCCChHHHH
Q 039430 6 IWICVSVDFGERQIMTKIINSITGENQ----------SNLDPDRLQKVLRDSF-----N-GKRYLLVMDYVWNEDLEAWR 69 (308)
Q Consensus 6 ~WV~vs~~~~~~~ll~~il~~l~~~~~----------~~~~~~~~~~~l~~~L-----~-~kr~LlVLDdv~~~~~~~~~ 69 (308)
+.++-.+...-..+.+.+++.+.+... .....+.+...+.+.. . ..+-++++|++..-..+...
T Consensus 41 ~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~ 120 (319)
T PRK00440 41 LLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQ 120 (319)
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHH
Confidence 344445555556667777776643211 1112222223333322 1 34668999998765545566
Q ss_pred HHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCC
Q 039430 70 KFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGG 148 (308)
Q Consensus 70 ~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~g 148 (308)
.+...+......+++|+++.. ..+....... ...+++.+++.++....+.+.+...+.... ++....+++.++|
T Consensus 121 ~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr--~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~---~~al~~l~~~~~g 195 (319)
T PRK00440 121 ALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR--CAVFRFSPLKKEAVAERLRYIAENEGIEIT---DDALEAIYYVSEG 195 (319)
T ss_pred HHHHHHhcCCCCCeEEEEeCCccccchhHHHH--hheeeeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCC
Confidence 677776655556777777643 2222211111 156899999999998888887754333222 3567888999998
Q ss_pred ChHHHH
Q 039430 149 ILLAVK 154 (308)
Q Consensus 149 lPLai~ 154 (308)
.+--+.
T Consensus 196 d~r~~~ 201 (319)
T PRK00440 196 DMRKAI 201 (319)
T ss_pred CHHHHH
Confidence 766543
No 35
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.99 E-value=1.5 Score=40.16 Aligned_cols=101 Identities=14% Similarity=0.116 Sum_probs=68.2
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-....++.+...+.......++|++|.+ ..+....... ...+++.+++.++..+.+.+.+...+
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SR--c~~~~~~~l~~~el~~~L~~~~~~~g 195 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSR--CLQFKLKIISEEKIFNFLKYILIKES 195 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhh--ceEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 45669999999877656677888888766666777776654 3343333211 26799999999999888887664332
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKT 155 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ 155 (308)
... -++.+..|++.++|.|-.+..
T Consensus 196 ~~i---~~~al~~ia~~s~G~~R~al~ 219 (363)
T PRK14961 196 IDT---DEYALKLIAYHAHGSMRDALN 219 (363)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 211 235667899999998864433
No 36
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.63 E-value=2.4 Score=39.40 Aligned_cols=101 Identities=15% Similarity=0.226 Sum_probs=68.1
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEe-cchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTT-RSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTT-R~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-....++.+...+......+.+|++| +...+....... ..++++.+++.++....+...+-..+
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR--~~~v~f~~l~~~ei~~~l~~~~~~~g 203 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASR--CQRFNFKRIPLEEIQQQLQGICEAEG 203 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHH--HHHhhcCCCCHHHHHHHHHHHHHHcC
Confidence 456789999998766567888888887666666665554 445554433211 15788999999998888877663322
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKT 155 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ 155 (308)
.. --.+.+..|++.++|.+--+..
T Consensus 204 ~~---i~~~al~~l~~~s~g~lr~a~~ 227 (397)
T PRK14955 204 IS---VDADALQLIGRKAQGSMRDAQS 227 (397)
T ss_pred CC---CCHHHHHHHHHHcCCCHHHHHH
Confidence 21 1235678899999997754433
No 37
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=91.62 E-value=2.9 Score=41.46 Aligned_cols=102 Identities=14% Similarity=0.132 Sum_probs=66.6
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-+......|...+..-...+++|++|.+ ..+...+... ...+.+.+++.++....+.+.+-..+
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSR--C~~f~f~~Ls~eeI~~~L~~Il~kEg 195 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSR--CLQFVLRNMTAQQVADHLAHVLDSEK 195 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHH--HhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 56679999999776555566777777654455667766654 3333222111 15688889999999998887774433
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTL 156 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~i 156 (308)
... ..+....|++.++|.+--+..+
T Consensus 196 i~i---d~eAL~~Ia~~A~GslRdAlnL 220 (709)
T PRK08691 196 IAY---EPPALQLLGRAAAGSMRDALSL 220 (709)
T ss_pred CCc---CHHHHHHHHHHhCCCHHHHHHH
Confidence 222 2356788999999987544433
No 38
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=91.51 E-value=5.1 Score=41.01 Aligned_cols=156 Identities=8% Similarity=-0.010 Sum_probs=80.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCC-CCCCCHHHHHHHHHHHcCC---ceEEEEEecCCCCChHHHHHHHHhhcC-CC
Q 039430 5 KIWICVSVDFGERQIMTKIINSITGEN-QSNLDPDRLQKVLRDSFNG---KRYLLVMDYVWNEDLEAWRKFKSLLLG-GA 79 (308)
Q Consensus 5 ~~WV~vs~~~~~~~ll~~il~~l~~~~-~~~~~~~~~~~~l~~~L~~---kr~LlVLDdv~~~~~~~~~~l~~~l~~-~~ 79 (308)
++.|....-.+...++..|++++.+.. .......+....+.+.+.. ...+||||++..-....=+.|...+.. ..
T Consensus 819 vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~ 898 (1164)
T PTZ00112 819 VFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK 898 (1164)
T ss_pred EEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc
Confidence 345655555678888999999885433 2233344455555555522 245899999964211011122222221 22
Q ss_pred CCcEEEE--EecchHH----HhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCc-hHHHHHHHHHHHcCCChHH
Q 039430 80 NGSKILV--TTRSRKV----ASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHP-NLIKIAKEIVKKCGGILLA 152 (308)
Q Consensus 80 ~gs~Ilv--TTR~~~v----a~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~-~l~~~~~~I~~~c~glPLa 152 (308)
.+++|++ .|...+. ...+........+...+++.++-.+++...+........+ .++-+|+.++..-|..=.|
T Consensus 899 s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKA 978 (1164)
T PTZ00112 899 INSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKA 978 (1164)
T ss_pred cCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHH
Confidence 4555554 3322111 1122221111346779999999999999887543211222 3334444444444445555
Q ss_pred HHHHhhhh
Q 039430 153 VKTLGSLL 160 (308)
Q Consensus 153 i~~ig~~L 160 (308)
|.++-...
T Consensus 979 LDILRrAg 986 (1164)
T PTZ00112 979 LQICRKAF 986 (1164)
T ss_pred HHHHHHHH
Confidence 55544433
No 39
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=91.02 E-value=6.2 Score=33.29 Aligned_cols=105 Identities=17% Similarity=0.107 Sum_probs=59.6
Q ss_pred EEEEEecCCCCChHHHHHHHHhhcC-CCCCc-EEEEEecchHHHhhhc-----cCCCCceeecCCCCchhhHhHhhhhhc
Q 039430 53 YLLVMDYVWNEDLEAWRKFKSLLLG-GANGS-KILVTTRSRKVASIMG-----TKGGSTGYNLQGLPFEDCLSLFMKCAC 125 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~~~l~~~l~~-~~~gs-~IlvTTR~~~va~~~~-----~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 125 (308)
-+||+||+...+...-..+...+.. ...|. .||+|++......... .......+.+.+++.++-..++.+.+-
T Consensus 92 ~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~ 171 (227)
T PRK08903 92 ELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAA 171 (227)
T ss_pred CEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHH
Confidence 4789999965432222334444432 12333 4677766543222110 000126789999999877777765443
Q ss_pred ccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhhh
Q 039430 126 KEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLL 160 (308)
Q Consensus 126 ~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L 160 (308)
..+... -++....+++.+.|.+..+..+-..|
T Consensus 172 ~~~v~l---~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 172 ERGLQL---ADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HcCCCC---CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 222222 23567778888999988887766655
No 40
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.88 E-value=5.1 Score=39.65 Aligned_cols=101 Identities=15% Similarity=0.114 Sum_probs=68.5
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecch-HHHhhhccCCCCceeecCCCCchhhHhHhhhhhccc
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSR-KVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKE 127 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 127 (308)
.+++-++|+|+|..-+......|...+.....+.++|++|.+. .+...... ....+++++++.++....+.+.+...
T Consensus 116 ~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlS--RCq~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVIS--RCLQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHH--hhheeeccCCCHHHHHHHHHHHHHHc
Confidence 3566799999998766566777888887666667777777653 33222211 12689999999999999888777443
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHH
Q 039430 128 ERDKHPNLIKIAKEIVKKCGGILLAVK 154 (308)
Q Consensus 128 ~~~~~~~l~~~~~~I~~~c~glPLai~ 154 (308)
+.. --.+....|++.++|.+-.+.
T Consensus 194 gI~---id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 194 QIA---ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred CCC---CCHHHHHHHHHHcCCCHHHHH
Confidence 322 223456788999998774443
No 41
>PRK08084 DNA replication initiation factor; Provisional
Probab=90.85 E-value=1.8 Score=37.08 Aligned_cols=98 Identities=18% Similarity=0.136 Sum_probs=60.2
Q ss_pred EEEEecCCCCC-hHHHHH-HHHhhcC-CCCC-cEEEEEecch---------HHHhhhccCCCCceeecCCCCchhhHhHh
Q 039430 54 LLVMDYVWNED-LEAWRK-FKSLLLG-GANG-SKILVTTRSR---------KVASIMGTKGGSTGYNLQGLPFEDCLSLF 120 (308)
Q Consensus 54 LlVLDdv~~~~-~~~~~~-l~~~l~~-~~~g-s~IlvTTR~~---------~va~~~~~~~~~~~~~l~~L~~~ea~~Lf 120 (308)
+|++||+.... ...|+. +...+.. -..| .++|+||+.. ++...+... .++.+++++.++-.+++
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g---~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWG---QIYKLQPLSDEEKLQAL 176 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCC---ceeeecCCCHHHHHHHH
Confidence 78999996532 134543 3333321 1123 3699999754 333333333 78999999999999999
Q ss_pred hhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 121 MKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 121 ~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
.+.+...+... -+++..-|++.+.|..-++..+-
T Consensus 177 ~~~a~~~~~~l---~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 177 QLRARLRGFEL---PEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHHcCCCC---CHHHHHHHHHhhcCCHHHHHHHH
Confidence 88664433222 24677888888887655554433
No 42
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=90.62 E-value=7.8 Score=34.40 Aligned_cols=151 Identities=11% Similarity=0.129 Sum_probs=89.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCC-ceEEEEEecCCCC---C---hHHHHHHHHhhcC
Q 039430 5 KIWICVSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNG-KRYLLVMDYVWNE---D---LEAWRKFKSLLLG 77 (308)
Q Consensus 5 ~~WV~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~~---~---~~~~~~l~~~l~~ 77 (308)
++-|.+...++...+...|+.+++-......+...+.......|+. +--+||+|.+-+- . +...-.....+.+
T Consensus 98 Vv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N 177 (302)
T PF05621_consen 98 VVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN 177 (302)
T ss_pred EEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh
Confidence 5667888999999999999999986654555666666666677765 4568899998652 1 1112222333434
Q ss_pred CCCCcEEEEEecchHHHhhhccCC--CCceeecCCCCchhhHhHhhhhhccc---CCCCCchHHHHHHHHHHHcCCChHH
Q 039430 78 GANGSKILVTTRSRKVASIMGTKG--GSTGYNLQGLPFEDCLSLFMKCACKE---ERDKHPNLIKIAKEIVKKCGGILLA 152 (308)
Q Consensus 78 ~~~gs~IlvTTR~~~va~~~~~~~--~~~~~~l~~L~~~ea~~Lf~~~a~~~---~~~~~~~l~~~~~~I~~~c~glPLa 152 (308)
.-.=+-|.+-|+..--+-....+- .-..+.+..-..++-+.-|-...... .....-...+++..|...++|+.--
T Consensus 178 eL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 178 ELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred ccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHH
Confidence 344456677776544432221110 01456666666555443333222111 2222234568899999999998654
Q ss_pred HHH
Q 039430 153 VKT 155 (308)
Q Consensus 153 i~~ 155 (308)
+..
T Consensus 258 l~~ 260 (302)
T PF05621_consen 258 LSR 260 (302)
T ss_pred HHH
Confidence 443
No 43
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=90.49 E-value=2 Score=39.79 Aligned_cols=97 Identities=11% Similarity=0.105 Sum_probs=66.7
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-+......+...+.....+..+|++|.+ ..+...+... ...+.+.+++.++....+.+..+
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSR--c~~i~f~~~~~~~i~~~L~~~~~--- 190 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSR--CRHVALRTPSVEAVAEVLVRRDG--- 190 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhh--CeEEECCCCCHHHHHHHHHHhcC---
Confidence 45568888999887666667788877766666767666665 3444333222 26899999999999888875431
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTL 156 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~i 156 (308)
.. .+.+..++..++|.|.....+
T Consensus 191 --~~---~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 191 --VD---PETARRAARASQGHIGRARRL 213 (394)
T ss_pred --CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 11 245778999999999755443
No 44
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.27 E-value=5.3 Score=39.38 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=65.4
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEE-EecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhccc
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILV-TTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKE 127 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 127 (308)
.+.+-++|+|++..-.....+.|...+..-...+.+|+ |++...+...+... ..++++.+++.++....+.+.+-..
T Consensus 125 ~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SR--c~~vef~~l~~~ei~~~L~~i~~~e 202 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASR--CQRFNFKRIPLDEIQSQLQMICRAE 202 (620)
T ss_pred cCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh--ceEEecCCCCHHHHHHHHHHHHHHc
Confidence 34566899999977666667788888876555565554 54445554433221 2689999999999888887765432
Q ss_pred CCCCCchHHHHHHHHHHHcCCChH
Q 039430 128 ERDKHPNLIKIAKEIVKKCGGILL 151 (308)
Q Consensus 128 ~~~~~~~l~~~~~~I~~~c~glPL 151 (308)
+... -.+.+..|++.++|..-
T Consensus 203 gi~I---~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 203 GIQI---DADALQLIARKAQGSMR 223 (620)
T ss_pred CCCC---CHHHHHHHHHHhCCCHH
Confidence 2211 23567889999999554
No 45
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=90.06 E-value=1.8 Score=36.65 Aligned_cols=143 Identities=13% Similarity=0.150 Sum_probs=77.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCC----CCCCHHHHHHHHH------------HHcCCceEEEEEecCCCCCh-HHH
Q 039430 6 IWICVSVDFGERQIMTKIINSITGENQ----SNLDPDRLQKVLR------------DSFNGKRYLLVMDYVWNEDL-EAW 68 (308)
Q Consensus 6 ~WV~vs~~~~~~~ll~~il~~l~~~~~----~~~~~~~~~~~l~------------~~L~~kr~LlVLDdv~~~~~-~~~ 68 (308)
++++-.....=..+++.|...+..... --.+.++....+. +.+++ -=+|++||+..-.. ..|
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~DlL~iDDi~~l~~~~~~ 115 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRS-ADLLIIDDIQFLAGKQRT 115 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCT-SSEEEEETGGGGTTHHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhc-CCEEEEecchhhcCchHH
Confidence 466666666777788888776642111 1123333333333 33332 23889999976432 234
Q ss_pred HH-HHHhhcC-CCCCcEEEEEecch---------HHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHH
Q 039430 69 RK-FKSLLLG-GANGSKILVTTRSR---------KVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIK 137 (308)
Q Consensus 69 ~~-l~~~l~~-~~~gs~IlvTTR~~---------~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~ 137 (308)
.. +...+.. ...|.+||+|+... ++...+.. +.++++++++.++-..++.+.+...+...+ ++
T Consensus 116 q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~---Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~---~~ 189 (219)
T PF00308_consen 116 QEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSW---GLVVELQPPDDEDRRRILQKKAKERGIELP---EE 189 (219)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHC---SEEEEE----HHHHHHHHHHHHHHTT--S----HH
T ss_pred HHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhh---cchhhcCCCCHHHHHHHHHHHHHHhCCCCc---HH
Confidence 33 3332221 13467899999553 22222222 268999999999999999998866544322 35
Q ss_pred HHHHHHHHcCCChHHHHH
Q 039430 138 IAKEIVKKCGGILLAVKT 155 (308)
Q Consensus 138 ~~~~I~~~c~glPLai~~ 155 (308)
++.-|++.+.+..-.+..
T Consensus 190 v~~~l~~~~~~~~r~L~~ 207 (219)
T PF00308_consen 190 VIEYLARRFRRDVRELEG 207 (219)
T ss_dssp HHHHHHHHTTSSHHHHHH
T ss_pred HHHHHHHhhcCCHHHHHH
Confidence 677777777665544443
No 46
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.72 E-value=2.5 Score=41.51 Aligned_cols=107 Identities=15% Similarity=0.177 Sum_probs=71.0
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhccc
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKE 127 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 127 (308)
.+++-++|+|++..-.....+.|...+..-.....+|++|.+ ..+...+... ...+++.+++.++....+.+.+...
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SR--cq~i~F~pLs~~eL~~~L~~il~~e 194 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSR--CQHFTFTRLSEAGLEAHLTKVLGRE 194 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhh--hhccccCCCCHHHHHHHHHHHHHHc
Confidence 356679999999877666777888887654445556555544 4444333211 1578999999999998888766443
Q ss_pred CCCCCchHHHHHHHHHHHcCCC-hHHHHHHhhhh
Q 039430 128 ERDKHPNLIKIAKEIVKKCGGI-LLAVKTLGSLL 160 (308)
Q Consensus 128 ~~~~~~~l~~~~~~I~~~c~gl-PLai~~ig~~L 160 (308)
+... ..+.+..|++.++|. -.|+..+...+
T Consensus 195 gi~i---d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 195 GVDY---DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred CCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3222 235678888999985 46777765444
No 47
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.56 E-value=16 Score=33.32 Aligned_cols=99 Identities=17% Similarity=0.198 Sum_probs=63.3
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEe-cchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTT-RSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTT-R~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-....+..+...+......+.+|++| ....+....... ...++..++++++....+.+.+...+
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr--~~~v~~~~~~~~~l~~~l~~~~~~~g 184 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSR--CQIFDFKRITIKDIKEHLAGIAVKEG 184 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhc--ceeEecCCccHHHHHHHHHHHHHHcC
Confidence 456689999997655455777777665544455555555 433333332211 25789999999999988888775433
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAV 153 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai 153 (308)
.... .+.+..|++.++|.+-.+
T Consensus 185 ~~i~---~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 185 IKFE---DDALHIIAQKADGALRDA 206 (367)
T ss_pred CCCC---HHHHHHHHHhCCCCHHHH
Confidence 3222 356788888899865533
No 48
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=89.48 E-value=6.1 Score=37.38 Aligned_cols=102 Identities=12% Similarity=0.065 Sum_probs=62.8
Q ss_pred EEEEEecCCCCCh-HHH-HHHHHhhcC-CCCCcEEEEEecch---------HHHhhhccCCCCceeecCCCCchhhHhHh
Q 039430 53 YLLVMDYVWNEDL-EAW-RKFKSLLLG-GANGSKILVTTRSR---------KVASIMGTKGGSTGYNLQGLPFEDCLSLF 120 (308)
Q Consensus 53 ~LlVLDdv~~~~~-~~~-~~l~~~l~~-~~~gs~IlvTTR~~---------~va~~~~~~~~~~~~~l~~L~~~ea~~Lf 120 (308)
-+||+||+..... ..+ +.+...+.. ...|..||+|+... .+...+.. +.++.+++++.++-..++
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~---Gl~~~L~~pd~e~r~~iL 284 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNM---GLSIAIQKLDNKTATAII 284 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhC---CceeccCCcCHHHHHHHH
Confidence 3899999965321 122 334333321 13445688886643 22222222 267889999999999999
Q ss_pred hhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhh
Q 039430 121 MKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGS 158 (308)
Q Consensus 121 ~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~ 158 (308)
.+.+-..+.. ..--+++..-|++.++|.|-.+..+..
T Consensus 285 ~~~~~~~gl~-~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 285 KKEIKNQNIK-QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHHhcCCC-CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 9888543211 012246788899999998877665543
No 49
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.29 E-value=7.7 Score=38.29 Aligned_cols=100 Identities=17% Similarity=0.186 Sum_probs=68.9
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEE-EecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILV-TTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-....++.|...+..-..++.+|+ ||....+...+... ..++++.+++.++....+.+.+...+
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SR--c~iv~f~~ls~~ei~~~L~~ia~~eg 197 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSR--CQIFDFNRIQVADIVNHLQYVASKEG 197 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhh--hheeecCCCCHHHHHHHHHHHHHHcC
Confidence 4566889999987766778888888877666666655 44555555443322 26799999999999988887664433
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVK 154 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~ 154 (308)
... -.+.+..|++.++|..--+.
T Consensus 198 i~i---~~~al~~La~~s~gdlr~al 220 (614)
T PRK14971 198 ITA---EPEALNVIAQKADGGMRDAL 220 (614)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHH
Confidence 222 23467889999999665443
No 50
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=88.93 E-value=23 Score=34.26 Aligned_cols=115 Identities=15% Similarity=0.182 Sum_probs=74.8
Q ss_pred HHHHHHHHHHH----cCCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecch-HHHhhhccCCCCceeecCCC
Q 039430 37 PDRLQKVLRDS----FNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSR-KVASIMGTKGGSTGYNLQGL 111 (308)
Q Consensus 37 ~~~~~~~l~~~----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~va~~~~~~~~~~~~~l~~L 111 (308)
.+++.+.+... ..+++-++|+|++..-..+..+.|...+..-...+++|++|.+. .+....... ...+++.++
T Consensus 99 Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SR--c~~~~F~~L 176 (535)
T PRK08451 99 IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSR--TQHFRFKQI 176 (535)
T ss_pred HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhh--ceeEEcCCC
Confidence 45555544331 12456799999998777677778888887666667777666553 332222221 267999999
Q ss_pred CchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 039430 112 PFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTL 156 (308)
Q Consensus 112 ~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~i 156 (308)
+.++....+.+.+...+... -++.+..|++.++|.+--+..+
T Consensus 177 s~~ei~~~L~~Il~~EGi~i---~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 177 PQNSIISHLKTILEKEGVSY---EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCcHHHHHHH
Confidence 99999888877664333222 2356788999999988554443
No 51
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=88.90 E-value=0.44 Score=41.23 Aligned_cols=61 Identities=8% Similarity=0.117 Sum_probs=37.3
Q ss_pred CCCeEEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCCCH------HHHHHHHHHH-cCCceEEEEEecCC
Q 039430 1 HFELKIWICVSVD--FGERQIMTKIINSITGENQSNLDP------DRLQKVLRDS-FNGKRYLLVMDYVW 61 (308)
Q Consensus 1 ~Fd~~~WV~vs~~--~~~~~ll~~il~~l~~~~~~~~~~------~~~~~~l~~~-L~~kr~LlVLDdv~ 61 (308)
||+.++||+++.+ +++.++++.+...+-......... .......... -.+++.+|++|++.
T Consensus 44 ~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 44 HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Confidence 6899999998777 799999999944332111111111 1122222222 24789999999984
No 52
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.74 E-value=8.4 Score=36.82 Aligned_cols=101 Identities=18% Similarity=0.198 Sum_probs=69.5
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEe-cchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTT-RSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTT-R~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-+....+.|...+..-...+++|++| ....+...+... ...+++.+++.++....+.+.+...+
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SR--c~~~~f~~l~~~el~~~L~~ia~~Eg 192 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISR--CQRFDLQKIPTDKLVEHLVDIAKKEN 192 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHh--heeeecccccHHHHHHHHHHHHHHcC
Confidence 466789999997766566778888887666666666555 445555443322 26799999999999999988775433
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKT 155 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ 155 (308)
... -.+....|++.++|.+-.+..
T Consensus 193 i~i---~~eAL~lIa~~s~GslR~als 216 (491)
T PRK14964 193 IEH---DEESLKLIAENSSGSMRNALF 216 (491)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 222 234567889999987754433
No 53
>PRK06620 hypothetical protein; Validated
Probab=88.55 E-value=6.6 Score=33.04 Aligned_cols=93 Identities=11% Similarity=0.012 Sum_probs=54.9
Q ss_pred EEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchH-------HHhhhccCCCCceeecCCCCchhhHhHhhhhhc
Q 039430 53 YLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRK-------VASIMGTKGGSTGYNLQGLPFEDCLSLFMKCAC 125 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-------va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 125 (308)
-+|++||+..-+....-.+...+. ..|..||+|++... ....+.. +.++.+++++.++-..++++.+.
T Consensus 87 d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~---gl~~~l~~pd~~~~~~~l~k~~~ 161 (214)
T PRK06620 87 NAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKS---VLSILLNSPDDELIKILIFKHFS 161 (214)
T ss_pred CEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhC---CceEeeCCCCHHHHHHHHHHHHH
Confidence 478899996322111112222222 34668999987432 2222322 26899999999998888888764
Q ss_pred ccCCCCCchHHHHHHHHHHHcCCChHHH
Q 039430 126 KEERDKHPNLIKIAKEIVKKCGGILLAV 153 (308)
Q Consensus 126 ~~~~~~~~~l~~~~~~I~~~c~glPLai 153 (308)
..+... -+++..-|++.+.|.--.+
T Consensus 162 ~~~l~l---~~ev~~~L~~~~~~d~r~l 186 (214)
T PRK06620 162 ISSVTI---SRQIIDFLLVNLPREYSKI 186 (214)
T ss_pred HcCCCC---CHHHHHHHHHHccCCHHHH
Confidence 332222 2466777888887654333
No 54
>PRK05642 DNA replication initiation factor; Validated
Probab=88.44 E-value=3 Score=35.68 Aligned_cols=102 Identities=15% Similarity=0.140 Sum_probs=60.2
Q ss_pred EEEEecCCCCC-hHHHHH-HHHhhcC-CCCCcEEEEEecchHHHhhh-----cc-CCCCceeecCCCCchhhHhHhhhhh
Q 039430 54 LLVMDYVWNED-LEAWRK-FKSLLLG-GANGSKILVTTRSRKVASIM-----GT-KGGSTGYNLQGLPFEDCLSLFMKCA 124 (308)
Q Consensus 54 LlVLDdv~~~~-~~~~~~-l~~~l~~-~~~gs~IlvTTR~~~va~~~-----~~-~~~~~~~~l~~L~~~ea~~Lf~~~a 124 (308)
+||+||+.... ...|.. +...+.. ..+|..||+|++...-.-.. .. ...+.++.+++++.++-..++++++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 68899996421 134543 4444432 23466799988753321111 00 0012578899999999999998666
Q ss_pred cccCCCCCchHHHHHHHHHHHcCCChHHHHHHhh
Q 039430 125 CKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGS 158 (308)
Q Consensus 125 ~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~ 158 (308)
...+...+ +++..-|++.+.|..-.+..+-.
T Consensus 180 ~~~~~~l~---~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 180 SRRGLHLT---DEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHcCCCCC---HHHHHHHHHhcCCCHHHHHHHHH
Confidence 44332222 46778888888877555544333
No 55
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.05 E-value=8.5 Score=37.33 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=67.7
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEE-EecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhccc
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILV-TTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKE 127 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 127 (308)
.+++-++|+|++..-+....+.|...+......+.+|+ ||....+...+... ...+++.+++.++....+.+.+-..
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SR--c~~~~f~~Ls~~eI~~~L~~il~~e 194 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSR--CIQLHLKHISQADIKDQLKIILAKE 194 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHh--eeeEEeCCCCHHHHHHHHHHHHHHc
Confidence 35677999999987666677888888877655665654 54444444332221 2689999999999888887755332
Q ss_pred CCCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 039430 128 ERDKHPNLIKIAKEIVKKCGGILL-AVKTL 156 (308)
Q Consensus 128 ~~~~~~~l~~~~~~I~~~c~glPL-ai~~i 156 (308)
+.. -.++....|++.++|.+- |+..+
T Consensus 195 gi~---~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 195 NIN---SDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred CCC---CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 222 223456778899999664 44443
No 56
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=87.92 E-value=9 Score=36.28 Aligned_cols=102 Identities=17% Similarity=0.167 Sum_probs=65.1
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEec-chHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTR-SRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR-~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-.....+.|...+.....+..+|++|. ...+...+... ...+++.++++++....+.+.+-..+
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sR--c~~v~f~~l~~~el~~~L~~~~~~eg 197 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSR--CQKMHLKRIPEETIIDKLALIAKQEG 197 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHh--ceEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 5677899999976554556677777766555666666653 33333332211 26789999999998888877664322
Q ss_pred CCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILL-AVKTL 156 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPL-ai~~i 156 (308)
... -.+.+..|++.++|.+- |+..+
T Consensus 198 ~~i---~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 198 IET---SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 221 23567888999998654 44433
No 57
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=87.90 E-value=10 Score=34.21 Aligned_cols=94 Identities=7% Similarity=-0.024 Sum_probs=67.3
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecch-HHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSR-KVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++=++|+|++...+......+...+..-..++.+|++|.+. .+....... ...+.+.+++.++..+.+......
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SR--C~~~~~~~~~~~~~~~~L~~~~~~-- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSR--CQTWLIHPPEEQQALDWLQAQSSA-- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhh--ceEEeCCCCCHHHHHHHHHHHhcc--
Confidence 566788899998887778888999898777777777777664 444343221 267999999999999888775411
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAV 153 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai 153 (308)
.. ..+...+..++|.|+.+
T Consensus 182 ---~~---~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 182 ---EI---SEILTALRINYGRPLLA 200 (325)
T ss_pred ---Ch---HHHHHHHHHcCCCHHHH
Confidence 11 12556788899999644
No 58
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=87.77 E-value=9.5 Score=37.43 Aligned_cols=90 Identities=12% Similarity=0.120 Sum_probs=54.8
Q ss_pred EEEEecCCCCCh-HHHH-HHHHhhcC-CCCCcEEEEEecch---------HHHhhhccCCCCceeecCCCCchhhHhHhh
Q 039430 54 LLVMDYVWNEDL-EAWR-KFKSLLLG-GANGSKILVTTRSR---------KVASIMGTKGGSTGYNLQGLPFEDCLSLFM 121 (308)
Q Consensus 54 LlVLDdv~~~~~-~~~~-~l~~~l~~-~~~gs~IlvTTR~~---------~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~ 121 (308)
+|||||+..... +.|. .+...+.. ...|..||+||... .+...+.. +.++.+...+.+.-..+++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~---GLvv~I~~PD~EtR~aIL~ 456 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEW---GLITDVQPPELETRIAILR 456 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhc---CceEEcCCCCHHHHHHHHH
Confidence 899999975421 2232 23333321 12355688888762 12222222 3689999999999999999
Q ss_pred hhhcccCCCCCchHHHHHHHHHHHcCCC
Q 039430 122 KCACKEERDKHPNLIKIAKEIVKKCGGI 149 (308)
Q Consensus 122 ~~a~~~~~~~~~~l~~~~~~I~~~c~gl 149 (308)
+++...+...+ .++..-|++.+.+.
T Consensus 457 kka~~r~l~l~---~eVi~yLa~r~~rn 481 (617)
T PRK14086 457 KKAVQEQLNAP---PEVLEFIASRISRN 481 (617)
T ss_pred HHHHhcCCCCC---HHHHHHHHHhccCC
Confidence 88855443322 35666677776654
No 59
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=87.40 E-value=4.7 Score=41.10 Aligned_cols=101 Identities=11% Similarity=0.159 Sum_probs=68.9
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEec-chHHHhhhccCCCCceeecCCCCchhhHhHhhhhhccc
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTR-SRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKE 127 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR-~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 127 (308)
.+++-++|||++........+.|+..+..-...+.+|++|. ...+...+... ...|.+..++.++...++.+.+-..
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSR--c~~v~F~~l~~~~l~~~L~~il~~E 195 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSR--THHYPFRLVPPEVMRGYLERICAQE 195 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhh--eeEEEeeCCCHHHHHHHHHHHHHHc
Confidence 35666899999988777788888888887666666665554 44454443322 2679999999999888887765332
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHH
Q 039430 128 ERDKHPNLIKIAKEIVKKCGGILLAVK 154 (308)
Q Consensus 128 ~~~~~~~l~~~~~~I~~~c~glPLai~ 154 (308)
+... -.+....|++.++|.+..+.
T Consensus 196 Gv~i---d~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 196 GVPV---EPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred CCCC---CHHHHHHHHHHcCCCHHHHH
Confidence 2221 23456788999999884443
No 60
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=87.33 E-value=4.4 Score=40.73 Aligned_cols=95 Identities=22% Similarity=0.224 Sum_probs=55.8
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEE--ecchH--HHhhhccCCCCceeecCCCCchhhHhHhhhhhc
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVT--TRSRK--VASIMGTKGGSTGYNLQGLPFEDCLSLFMKCAC 125 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvT--TR~~~--va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 125 (308)
+++.+|||||++.-+...++.+...+. .|+.++++ |.+.. +....... ..++.+++|+.++...++.+.+-
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR--~~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSR--SRLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhcc--ccceecCCCCHHHHHHHHHHHHH
Confidence 467799999997655455566665543 35555553 34321 22222111 26799999999999999987664
Q ss_pred cc----CCCCCchHHHHHHHHHHHcCCC
Q 039430 126 KE----ERDKHPNLIKIAKEIVKKCGGI 149 (308)
Q Consensus 126 ~~----~~~~~~~l~~~~~~I~~~c~gl 149 (308)
.. +.....--.+....|++.+.|.
T Consensus 183 ~~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 183 DKERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred HHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 10 0000111234567777777774
No 61
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.13 E-value=4.8 Score=38.33 Aligned_cols=118 Identities=15% Similarity=0.108 Sum_probs=71.5
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-.....+.+...+........+|++|.+ ..+...+... ..++.+.+++.++....+.+.+...+
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR--~~vv~f~~l~~~el~~~L~~i~~~eg 193 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISR--CQVIEFRNISDELIIKRLQEVAEAEG 193 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcC--cEEEEECCccHHHHHHHHHHHHHHcC
Confidence 46679999999654434456666666654444544444443 4444433322 26789999999999888888774333
Q ss_pred CCCCchHHHHHHHHHHHcCC-ChHHHHHHhhhhc---CCCCHHHHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGG-ILLAVKTLGSLLY---DSTDEHFWEYV 172 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~g-lPLai~~ig~~L~---~~~~~~~w~~~ 172 (308)
.... .+....|++.++| ++.|+..+-.+.. ..-+.+..+.+
T Consensus 194 i~i~---~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~ 238 (472)
T PRK14962 194 IEID---REALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEA 238 (472)
T ss_pred CCCC---HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 2222 3566778887864 5777776655332 12345544443
No 62
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=87.05 E-value=7.6 Score=38.87 Aligned_cols=100 Identities=18% Similarity=0.125 Sum_probs=66.2
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEE-EEEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKI-LVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~I-lvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-....+..|...+........+ ++||+...+....... ...+++.+++.++....+...+-..+
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SR--cq~ieF~~L~~eeI~~~L~~il~keg 194 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSR--VQRFNFRRISEDEIVSRLEFILEKEN 194 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhh--ceeEEccCCCHHHHHHHHHHHHHHcC
Confidence 56679999999776666778888877665445554 4555555554433222 26899999999999888877653322
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVK 154 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~ 154 (308)
... ..+.+..|++.++|.+--+.
T Consensus 195 I~i---d~eAl~~LA~lS~GslR~Al 217 (725)
T PRK07133 195 ISY---EKNALKLIAKLSSGSLRDAL 217 (725)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHH
Confidence 221 13457789999988664333
No 63
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.42 E-value=7.4 Score=38.34 Aligned_cols=102 Identities=16% Similarity=0.172 Sum_probs=69.0
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEe-cchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTT-RSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTT-R~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
++.-++|+|+|..-+...++.+...+..-....++|++| ....+....... ...+++++++.++....+.+.+...+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSR--c~~~~f~~Ls~eei~~~L~~i~~~eg 200 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSR--CLQFNLRPMAPETVLEHLTQVLAAEN 200 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHh--ceeeecCCCCHHHHHHHHHHHHHHcC
Confidence 345689999998877677888888887655566666555 444444332221 26899999999999999888764433
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTL 156 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~i 156 (308)
... ..+....|++.++|.+--+..+
T Consensus 201 i~i---e~~AL~~La~~s~GslR~al~l 225 (618)
T PRK14951 201 VPA---EPQALRLLARAARGSMRDALSL 225 (618)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 222 2356788899999877544443
No 64
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=86.22 E-value=5.7 Score=35.74 Aligned_cols=97 Identities=10% Similarity=0.108 Sum_probs=67.6
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++...+...-..|...+..-..++.+|++|.+ ..+...+... ...+.+.+++.+++...+.+.-
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSR--Cq~i~~~~~~~~~~~~~L~~~~---- 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSR--CQRLEFKLPPAHEALAWLLAQG---- 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhh--heEeeCCCcCHHHHHHHHHHcC----
Confidence 45679999999877666677788888776667777777765 4444443322 2678899999999988886531
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
. . ...+..++..++|.|+......
T Consensus 186 ~--~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 V--S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C--C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 1 1236678999999998765543
No 65
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.04 E-value=12 Score=35.66 Aligned_cols=100 Identities=15% Similarity=0.085 Sum_probs=67.2
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEE-EEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhccc
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKIL-VTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKE 127 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Il-vTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 127 (308)
.++.-++|+|++..-....++.|...+........+| .||....+....... ...|.+.+++.++....+.+.+...
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SR--Cq~~~f~~ls~~~i~~~L~~i~~~E 196 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSR--CQDFIFKKVPLSVLQDYSEKLCKIE 196 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhh--hheeeecCCCHHHHHHHHHHHHHHc
Confidence 3566799999998877677888888776544455544 455545554433322 1579999999999888888776433
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHH
Q 039430 128 ERDKHPNLIKIAKEIVKKCGGILLAV 153 (308)
Q Consensus 128 ~~~~~~~l~~~~~~I~~~c~glPLai 153 (308)
+... ..+....|++.++|.+--.
T Consensus 197 gi~~---e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 197 NVQY---DQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred CCCC---CHHHHHHHHHHcCChHHHH
Confidence 3221 2356788999999987443
No 66
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=86.01 E-value=15 Score=36.19 Aligned_cols=103 Identities=16% Similarity=0.138 Sum_probs=69.8
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEe-cchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTT-RSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTT-R~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-.....+.|...+..-..++++|++| ....+...+... ...+++..++.++....+.+.+-..+
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SR--cq~~~f~~l~~~el~~~L~~i~~keg 208 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSR--CQRFDLRRIEADVLAAHLSRIAAKEG 208 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhh--eeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 456689999997766566777888887665666666554 444444333222 26799999999999999988774333
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
.... .+....|++.++|.+.-+...-
T Consensus 209 i~i~---~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 209 VEVE---DEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2222 2567888999999886655443
No 67
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=85.91 E-value=9.1 Score=37.89 Aligned_cols=103 Identities=14% Similarity=0.154 Sum_probs=68.6
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhccc
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKE 127 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 127 (308)
.+++-++|+|++..-+....+.|+..+..-....++|++|.+ ..+...+... ...+++.+|+.++....+.+.+-..
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SR--C~~~~f~~Ls~~ei~~~L~~il~~e 194 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR--CLQFHLKALDVEQIRQQLEHILQAE 194 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhh--heEeeCCCCCHHHHHHHHHHHHHHc
Confidence 456679999999887767788888888765555555555544 4444332221 2679999999999998888766322
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 039430 128 ERDKHPNLIKIAKEIVKKCGGILLAVKTL 156 (308)
Q Consensus 128 ~~~~~~~l~~~~~~I~~~c~glPLai~~i 156 (308)
+.. ...+....|++.++|.|-.+..+
T Consensus 195 ~i~---~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 195 QIP---FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred CCC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 221 12345678899999977644433
No 68
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.77 E-value=12 Score=38.41 Aligned_cols=103 Identities=16% Similarity=0.190 Sum_probs=70.1
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhccc
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKE 127 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 127 (308)
.+++-++|+|++..-.....+.|+..+..-....++|++|.+ ..+...+-.. ...+++.+|+.++....+.+.+...
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSR--Cq~f~fkpLs~eEI~~~L~~il~~E 194 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSR--CLQFNLKSLTQDEIGTQLNHILTQE 194 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHh--heEEeCCCCCHHHHHHHHHHHHHHc
Confidence 356779999999887767788888888765556666665554 4444332211 1689999999999998888766332
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 039430 128 ERDKHPNLIKIAKEIVKKCGGILLAVKTL 156 (308)
Q Consensus 128 ~~~~~~~l~~~~~~I~~~c~glPLai~~i 156 (308)
+. .-..+....|++.++|.|--+..+
T Consensus 195 gI---~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 195 QL---PFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred CC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 21 122356788999999988544433
No 69
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.75 E-value=7.3 Score=37.66 Aligned_cols=97 Identities=14% Similarity=0.158 Sum_probs=64.0
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-.....+.+...+......+.+|++|.+ +.+...+... ...+++.+++.++....+.+.+...+
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SR--c~~~~f~~l~~~~i~~~L~~il~~eg 195 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSR--CLQFNLKQMPPPLIVSHLQHILEQEN 195 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHH--HHHHhcCCCCHHHHHHHHHHHHHHcC
Confidence 56679999999876656677788888765556666665544 3333221111 15789999999999888877664322
Q ss_pred CCCCchHHHHHHHHHHHcCCChH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILL 151 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPL 151 (308)
.. -..+....|++.++|.+-
T Consensus 196 i~---~~~~al~~la~~s~Gslr 215 (527)
T PRK14969 196 IP---FDATALQLLARAAAGSMR 215 (527)
T ss_pred CC---CCHHHHHHHHHHcCCCHH
Confidence 22 123456778889999775
No 70
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=85.68 E-value=7.2 Score=34.99 Aligned_cols=101 Identities=15% Similarity=0.055 Sum_probs=67.2
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
.+++-++|+|++...+......|...+..-.++.=|++|+.-..+...+... ...+.+.+++.++..+.+.+......
T Consensus 122 ~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fILi~~~~~~Ll~TI~SR--cq~i~f~~l~~~~~~~~L~~~~~~~~ 199 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLILIAPSPESLLPTIVSR--CQIIPFYRLSDEQLEQVLKRLGDEEI 199 (314)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEEEEECChHhCcHHHHhh--ceEEecCCCCHHHHHHHHHHhhcccc
Confidence 3567799999998777677888888886555443344444444444444332 26899999999999999987642111
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
.......++...+|.|..+..+.
T Consensus 200 ------~~~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 200 ------LNINFPELLALAQGSPGAAIANI 222 (314)
T ss_pred ------chhHHHHHHHHcCCCHHHHHHHH
Confidence 11113578899999997665533
No 71
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=85.35 E-value=8 Score=37.87 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=67.0
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEE-EecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILV-TTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-....+..|...+........+|+ |+....+....... ...+++.+++.++....+.+.+...+
T Consensus 118 ~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SR--cq~ieF~~Ls~~eL~~~L~~il~keg 195 (605)
T PRK05896 118 FKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISR--CQRYNFKKLNNSELQELLKSIAKKEK 195 (605)
T ss_pred CCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhh--hhhcccCCCCHHHHHHHHHHHHHHcC
Confidence 3455799999987665677888888876555555554 44444444333221 26799999999999988887764333
Q ss_pred CCCCchHHHHHHHHHHHcCCChH-HHHHHh
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILL-AVKTLG 157 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPL-ai~~ig 157 (308)
.... .+.+..+++.++|.+- |+..+-
T Consensus 196 i~Is---~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 196 IKIE---DNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred CCCC---HHHHHHHHHHcCCcHHHHHHHHH
Confidence 2222 3457789999999654 444433
No 72
>PRK05629 hypothetical protein; Validated
Probab=85.14 E-value=28 Score=31.17 Aligned_cols=149 Identities=11% Similarity=0.080 Sum_probs=82.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhcCCCC----------CCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHHH
Q 039430 2 FELKIWICVSVDFGERQIMTKIINSITGENQ----------SNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKF 71 (308)
Q Consensus 2 Fd~~~WV~vs~~~~~~~ll~~il~~l~~~~~----------~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l 71 (308)
+..+..+...+.+-..+....|...+..... .+.+.+++.....--+-+.|-+++++|.........+.+
T Consensus 5 l~~vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~~~~l~~~~t~slF~~~rlV~v~~~~~~~~~~~~~l 84 (318)
T PRK05629 5 QPPVHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVSQGELLDALSPSLFGEDRVIVLTNMEQAGKEPTDLA 84 (318)
T ss_pred CCceEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCCHHHHHHhhCcCccCCceEEEEeChHhcChhHHHHH
Confidence 3445566666666566666666666532211 223445555432111335667788887643322335566
Q ss_pred HHhhcCCCCCcEEEEEe----cchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcC
Q 039430 72 KSLLLGGANGSKILVTT----RSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCG 147 (308)
Q Consensus 72 ~~~l~~~~~gs~IlvTT----R~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~ 147 (308)
...+....+.+.+|+.+ +...+.+.+... +.+++..++.+.+...+..+.+-..+.... .+.+..+++.+|
T Consensus 85 ~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~--~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~---~~A~~~L~~~~g 159 (318)
T PRK05629 85 LSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKI--AVVHEAAKLKPRERPGWVTQEFKNHGVRPT---PDVVHALLEGVG 159 (318)
T ss_pred HHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhc--ceEeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHC
Confidence 66666555555555444 222222223221 255677778888877888777755443332 245677888888
Q ss_pred CChHHHHH
Q 039430 148 GILLAVKT 155 (308)
Q Consensus 148 glPLai~~ 155 (308)
+...++..
T Consensus 160 ~dl~~l~~ 167 (318)
T PRK05629 160 SDLRELAS 167 (318)
T ss_pred ccHHHHHH
Confidence 87777665
No 73
>PRK04195 replication factor C large subunit; Provisional
Probab=84.87 E-value=37 Score=32.42 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=61.6
Q ss_pred ceEEEEEecCCCCCh----HHHHHHHHhhcCCCCCcEEEEEecch-HHHh-hhccCCCCceeecCCCCchhhHhHhhhhh
Q 039430 51 KRYLLVMDYVWNEDL----EAWRKFKSLLLGGANGSKILVTTRSR-KVAS-IMGTKGGSTGYNLQGLPFEDCLSLFMKCA 124 (308)
Q Consensus 51 kr~LlVLDdv~~~~~----~~~~~l~~~l~~~~~gs~IlvTTR~~-~va~-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 124 (308)
++-+||+|++..-.. .....+...+.. .+..||+|+.+. .... .... ....+.+.+++.++....+.+.+
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lrs--r~~~I~f~~~~~~~i~~~L~~i~ 173 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELRN--ACLMIEFKRLSTRSIVPVLKRIC 173 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHhc--cceEEEecCCCHHHHHHHHHHHH
Confidence 678999999976421 335566666653 234466666432 1111 1111 12678999999999998888877
Q ss_pred cccCCCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 125 CKEERDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 125 ~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
...+...+ .++...|++.++|-.-.+....
T Consensus 174 ~~egi~i~---~eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 174 RKEGIECD---DEALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred HHcCCCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 54433322 3567889999998665554433
No 74
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=84.80 E-value=6.1 Score=36.74 Aligned_cols=66 Identities=23% Similarity=0.352 Sum_probs=47.8
Q ss_pred ceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhh-cc--CCCCceeecCCCCchhhHhH
Q 039430 51 KRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIM-GT--KGGSTGYNLQGLPFEDCLSL 119 (308)
Q Consensus 51 kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~-~~--~~~~~~~~l~~L~~~ea~~L 119 (308)
++.+|+||.|... .+|......+.+.++. +|++|+-+......- .. .+....+.+-||+..|-..+
T Consensus 94 ~~~yifLDEIq~v--~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 94 EKSYIFLDEIQNV--PDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CCceEEEecccCc--hhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 6789999999887 6799888888776666 888888876554221 11 11236789999999998654
No 75
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=84.80 E-value=3.5 Score=37.95 Aligned_cols=99 Identities=21% Similarity=0.206 Sum_probs=58.3
Q ss_pred cCCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEE--EecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhc
Q 039430 48 FNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILV--TTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCAC 125 (308)
Q Consensus 48 L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv--TTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 125 (308)
..++|.+|++|.|-.-+-.+ -...||.-.+|.-|+| ||-++.-.-...-.+...++.+++|+.+|-..++++-+.
T Consensus 101 ~~gr~tiLflDEIHRfnK~Q---QD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~ 177 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQ---QDALLPHVENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALL 177 (436)
T ss_pred hcCCceEEEEehhhhcChhh---hhhhhhhhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHh
Confidence 45789999999996432211 2334555567877776 565543321111111227899999999999999988442
Q ss_pred cc--CCC-CCchH-HHHHHHHHHHcCCC
Q 039430 126 KE--ERD-KHPNL-IKIAKEIVKKCGGI 149 (308)
Q Consensus 126 ~~--~~~-~~~~l-~~~~~~I~~~c~gl 149 (308)
.. ... ....+ ++.-.-++..++|-
T Consensus 178 ~~~rgl~~~~~~i~~~a~~~l~~~s~GD 205 (436)
T COG2256 178 DEERGLGGQIIVLDEEALDYLVRLSNGD 205 (436)
T ss_pred hhhcCCCcccccCCHHHHHHHHHhcCch
Confidence 21 111 01112 23556677777774
No 76
>PRK04132 replication factor C small subunit; Provisional
Probab=84.22 E-value=21 Score=36.57 Aligned_cols=116 Identities=9% Similarity=0.073 Sum_probs=75.5
Q ss_pred CHHHHHHHHHHHcC-----C-ceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeec
Q 039430 36 DPDRLQKVLRDSFN-----G-KRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNL 108 (308)
Q Consensus 36 ~~~~~~~~l~~~L~-----~-kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l 108 (308)
..+.+.+.+.+... + +.-++|+|++..-+......|...+..-...+++|++|.+ ..+....... ...+.+
T Consensus 609 gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSR--C~~i~F 686 (846)
T PRK04132 609 GINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR--CAIFRF 686 (846)
T ss_pred cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhh--ceEEeC
Confidence 45556555554332 1 3479999999887767778888888765556666665554 4443333222 268999
Q ss_pred CCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 039430 109 QGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTL 156 (308)
Q Consensus 109 ~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~i 156 (308)
.+++.++-...+...+-..+... -.+....|++.++|.+-.+..+
T Consensus 687 ~~ls~~~i~~~L~~I~~~Egi~i---~~e~L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 687 RPLRDEDIAKRLRYIAENEGLEL---TEEGLQAILYIAEGDMRRAINI 731 (846)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCHHHHHHH
Confidence 99999998888877653222221 1356789999999988544433
No 77
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=83.90 E-value=13 Score=33.73 Aligned_cols=95 Identities=9% Similarity=-0.002 Sum_probs=67.9
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++...+...-..|...+..-..++.+|++|.+ ..+...+... ...+.+.+++.+++...+.+..+
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR--Cq~~~~~~~~~~~~~~~L~~~~~--- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR--CRLHYLAPPPEQYALTWLSREVT--- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc--cccccCCCCCHHHHHHHHHHccC---
Confidence 56779999999887777788888888877777777777766 4455444322 15689999999999888865421
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVK 154 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~ 154 (308)
.+ .+.+..++..++|.|....
T Consensus 182 --~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 182 --MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred --CC---HHHHHHHHHHcCCCHHHHH
Confidence 11 1236788999999996443
No 78
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.86 E-value=16 Score=34.95 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=66.3
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEe-cchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhccc
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTT-RSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKE 127 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTT-R~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 127 (308)
.+++-++|+|++..-.....+.+...+........+|++| +...+....... ...+.+.+++.++....+.+.+-..
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SR--c~~i~f~~ls~~el~~~L~~i~k~e 194 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSR--CQRFIFSKPTKEQIKEYLKRICNEE 194 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHh--ceEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567799999997665556677777776655455555544 444444332221 2578999999999888888766433
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 128 ERDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 128 ~~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
+... -.+.+..|++.++|.+-.+....
T Consensus 195 gi~i---d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 195 KIEY---EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred CCCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 3222 23556778888999766544443
No 79
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.75 E-value=47 Score=32.67 Aligned_cols=103 Identities=14% Similarity=0.156 Sum_probs=68.8
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-.....+.|...+......+.+|++|.+ ..+....... ...+.+..++.++....+.+.+...+
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR--~~~i~f~~l~~~el~~~L~~~a~~eg 196 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSR--CQRFDFHRHSVADMAAHLRKIAAAEG 196 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhc--cceeeCCCCCHHHHHHHHHHHHHHcC
Confidence 45679999999766556677787777665556666665543 4444333221 25788999999998888887765433
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
.... .+.+..|++.++|.+-.+...-
T Consensus 197 l~i~---~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 197 INLE---PGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2222 3567889999999886555443
No 80
>COG3899 Predicted ATPase [General function prediction only]
Probab=83.32 E-value=5.6 Score=40.82 Aligned_cols=168 Identities=14% Similarity=0.148 Sum_probs=94.3
Q ss_pred HHHHHcC-CceEEEEEecCCCCChHHHHHHHHhhcCCC----CCcEEEEEecchHH-HhhhccCCCCceeecCCCCchhh
Q 039430 43 VLRDSFN-GKRYLLVMDYVWNEDLEAWRKFKSLLLGGA----NGSKILVTTRSRKV-ASIMGTKGGSTGYNLQGLPFEDC 116 (308)
Q Consensus 43 ~l~~~L~-~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~----~gs~IlvTTR~~~v-a~~~~~~~~~~~~~l~~L~~~ea 116 (308)
.+..... .|+..+|+||+.-.+....+-|........ .-..|..+...... ............+.|.||+..+.
T Consensus 145 ~i~~~~~~~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~ 224 (849)
T COG3899 145 FIQVFTAEEHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADT 224 (849)
T ss_pred HHHHHHhccCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhH
Confidence 3333343 459999999995544333333322222211 11133333333222 22112222337899999999999
Q ss_pred HhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhhhcCC------CCHHHHHHHHhhhccccccccCccchh
Q 039430 117 LSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDS------TDEHFWEYVRDNEIWRLEQKESGILPA 190 (308)
Q Consensus 117 ~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L~~~------~~~~~w~~~~~~~~~~~~~~~~~i~~~ 190 (308)
-.|......... ....+....|+++-.|.|+-+..+-..|..+ .+...|..=... ... ....+.+...
T Consensus 225 ~~lV~~~l~~~~----~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~-~~~~~~vv~~ 298 (849)
T COG3899 225 NQLVAATLGCTK----LLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGI-LATTDAVVEF 298 (849)
T ss_pred HHHHHHHhCCcc----cccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCC-chhhHHHHHH
Confidence 999988875432 2233568899999999999999888877663 223333210000 000 0111123345
Q ss_pred hhhhhcCCChhhhHHHhhhhcCCCCc
Q 039430 191 LRLSYDQLPPHLKQCVAYCSIFPKDF 216 (308)
Q Consensus 191 l~~sy~~L~~~~k~cfl~~s~fp~~~ 216 (308)
+..-.+.||...|.-+-..|++...+
T Consensus 299 l~~rl~kL~~~t~~Vl~~AA~iG~~F 324 (849)
T COG3899 299 LAARLQKLPGTTREVLKAAACIGNRF 324 (849)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhCccC
Confidence 66677888888877777777765443
No 81
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=83.23 E-value=13 Score=33.50 Aligned_cols=94 Identities=11% Similarity=0.060 Sum_probs=68.0
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-.+|+|++...+......+...+..-..++.+|++|.+ ..+...+... -..+.+.+++.+++.+.+...-
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SR--Cq~~~~~~~~~~~~~~~L~~~~---- 180 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSR--CQQWVVTPPSTAQAMQWLKGQG---- 180 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc--ceeEeCCCCCHHHHHHHHHHcC----
Confidence 45568899999887777888899988876677777766665 4455444332 2678999999999988886531
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTL 156 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~i 156 (308)
. . .+..++..++|.|+....+
T Consensus 181 ~---~----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 181 I---T----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred C---c----hHHHHHHHcCCCHHHHHHH
Confidence 1 1 1356789999999977654
No 82
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=83.17 E-value=13 Score=33.83 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=66.6
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++...+...+..+...+..-..++.+|++|.+ ..+...+... -..+.+.+++.++..+.+...-
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SR--cq~i~~~~~~~~~~~~~L~~~~---- 204 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSR--CRQFPMTVPAPEAAAAWLAAQG---- 204 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhc--CEEEEecCCCHHHHHHHHHHcC----
Confidence 45668889999988888899999999877777766666655 4444443322 1679999999999998887641
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
. .+ ...++..++|.|+....+.
T Consensus 205 ~--~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 205 V--AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred C--Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 1 11 1235778899997554443
No 83
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=83.07 E-value=6.4 Score=34.97 Aligned_cols=92 Identities=15% Similarity=0.139 Sum_probs=63.9
Q ss_pred EEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEE-EecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCC
Q 039430 53 YLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILV-TTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDK 131 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 131 (308)
=.+|||++.....+.|..+...+......++.++ |+--..+...+... -.-+..++|..++...-++..+-..+...
T Consensus 131 KiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SR--C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~ 208 (346)
T KOG0989|consen 131 KIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSR--CQKFRFKKLKDEDIVDRLEKIASKEGVDI 208 (346)
T ss_pred eEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhh--HHHhcCCCcchHHHHHHHHHHHHHhCCCC
Confidence 3788999999888999999999988666666544 44333333332221 14588999999998888888875443322
Q ss_pred CchHHHHHHHHHHHcCCC
Q 039430 132 HPNLIKIAKEIVKKCGGI 149 (308)
Q Consensus 132 ~~~l~~~~~~I~~~c~gl 149 (308)
..+..+.|++.++|.
T Consensus 209 ---d~~al~~I~~~S~Gd 223 (346)
T KOG0989|consen 209 ---DDDALKLIAKISDGD 223 (346)
T ss_pred ---CHHHHHHHHHHcCCc
Confidence 235678899999884
No 84
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=82.97 E-value=38 Score=31.11 Aligned_cols=151 Identities=15% Similarity=0.102 Sum_probs=87.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCC--ceEEEEEecCCCCChHHHHHHHHhhcCCCC-C
Q 039430 5 KIWICVSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNG--KRYLLVMDYVWNEDLEAWRKFKSLLLGGAN-G 81 (308)
Q Consensus 5 ~~WV~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~L~~--kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~-g 81 (308)
++.|+.-...+..+++.+|+++++..........+..+.+.+.+.. +.+++|||++..-....-+.+...+..... .
T Consensus 75 ~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~ 154 (366)
T COG1474 75 VVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENK 154 (366)
T ss_pred eEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccc
Confidence 4667777788899999999999976555566677788888888754 789999999965311100223333332222 3
Q ss_pred cEEE--EEecchHHHhhh----ccCCCCceeecCCCCchhhHhHhhhhhccc--CCCCCc-hHHHHHHHHHHHcCCChHH
Q 039430 82 SKIL--VTTRSRKVASIM----GTKGGSTGYNLQGLPFEDCLSLFMKCACKE--ERDKHP-NLIKIAKEIVKKCGGILLA 152 (308)
Q Consensus 82 s~Il--vTTR~~~va~~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~--~~~~~~-~l~~~~~~I~~~c~glPLa 152 (308)
++|+ ..+-+......+ ....+...+...+.+.+|-.+.+...+-.. +....+ .++-++...++..|-.=.|
T Consensus 155 ~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~a 234 (366)
T COG1474 155 VKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKA 234 (366)
T ss_pred eeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHH
Confidence 4433 333333322222 111122447888999999999888777432 222223 3334444444444444444
Q ss_pred HHH
Q 039430 153 VKT 155 (308)
Q Consensus 153 i~~ 155 (308)
|..
T Consensus 235 idi 237 (366)
T COG1474 235 IDI 237 (366)
T ss_pred HHH
Confidence 444
No 85
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.17 E-value=12 Score=35.97 Aligned_cols=101 Identities=12% Similarity=0.103 Sum_probs=65.3
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
++.-++|+|+|..-.....+.+...+..-...+++|++|.+ ..+....... ...+++++++.++....+.+.+-..+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SR--c~~~~f~~l~~~~i~~~l~~il~~eg 195 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSR--CLQFHLAQLPPLQIAAHCQHLLKEEN 195 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHH--hhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 46668999999876666777788888766566766665543 3443332211 25788999999988777666653332
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKT 155 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ 155 (308)
... ..+....|++.++|.+-.+..
T Consensus 196 i~~---~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 196 VEF---ENAALDLLARAANGSVRDALS 219 (509)
T ss_pred CCC---CHHHHHHHHHHcCCcHHHHHH
Confidence 221 224467788888887755443
No 86
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=80.67 E-value=3.7 Score=37.97 Aligned_cols=61 Identities=8% Similarity=0.116 Sum_probs=37.2
Q ss_pred CCCeEEEEEeCCCC--CHHHHHHHHHHHhcCCCCCCCCHHH-----HHHHHHHH--cCCceEEEEEecCC
Q 039430 1 HFELKIWICVSVDF--GERQIMTKIINSITGENQSNLDPDR-----LQKVLRDS--FNGKRYLLVMDYVW 61 (308)
Q Consensus 1 ~Fd~~~WV~vs~~~--~~~~ll~~il~~l~~~~~~~~~~~~-----~~~~l~~~--L~~kr~LlVLDdv~ 61 (308)
||++++||.+++.. .+.+++++|...+-....+...... ..-...+. -.+++.||++|++-
T Consensus 197 hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 197 HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 69999999999888 7888888887432211111111111 11111122 36799999999983
No 87
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=79.93 E-value=5.9 Score=36.72 Aligned_cols=61 Identities=7% Similarity=0.089 Sum_probs=38.0
Q ss_pred CCCeEEEEEeCCC--CCHHHHHHHHHHHhcCCCCCCCCH--HHH----HHHHHHH-cCCceEEEEEecCC
Q 039430 1 HFELKIWICVSVD--FGERQIMTKIINSITGENQSNLDP--DRL----QKVLRDS-FNGKRYLLVMDYVW 61 (308)
Q Consensus 1 ~Fd~~~WV~vs~~--~~~~~ll~~il~~l~~~~~~~~~~--~~~----~~~l~~~-L~~kr~LlVLDdv~ 61 (308)
||+..+||.++.. .++.++++.|+..+-....+.... -.+ .+..... -.+++.+|++|.+.
T Consensus 196 hfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 196 HPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred CCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChh
Confidence 5899999999866 789999999965443222211111 111 1122222 35799999999984
No 88
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=79.70 E-value=8.9 Score=35.07 Aligned_cols=97 Identities=16% Similarity=0.114 Sum_probs=55.1
Q ss_pred CceEEEEEecCCCC-----------ChHHHHHHHHhh---cC--CCCCcEEEEEecchHHHhhh--ccCCCCceeecCCC
Q 039430 50 GKRYLLVMDYVWNE-----------DLEAWRKFKSLL---LG--GANGSKILVTTRSRKVASIM--GTKGGSTGYNLQGL 111 (308)
Q Consensus 50 ~kr~LlVLDdv~~~-----------~~~~~~~l~~~l---~~--~~~gs~IlvTTR~~~va~~~--~~~~~~~~~~l~~L 111 (308)
....+|+||+++.- +.+....+...+ .. ...+.+||.||...+..... ....-+..+.+...
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCc
Confidence 35689999998642 111122233332 21 23466788888764432211 11011267899999
Q ss_pred CchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCCh
Q 039430 112 PFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGIL 150 (308)
Q Consensus 112 ~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glP 150 (308)
+.++..++|...+.......... ...+++.+.|..
T Consensus 294 ~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 294 DFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 99999999998875443221112 356777777754
No 89
>PF14516 AAA_35: AAA-like domain
Probab=79.52 E-value=38 Score=30.55 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=42.5
Q ss_pred ceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhhhcCC
Q 039430 104 TGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDS 163 (308)
Q Consensus 104 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L~~~ 163 (308)
..+.|++++.+|...|..+.-.. ..+ +..++|...+||.|.-+..++..+...
T Consensus 194 ~~i~L~~Ft~~ev~~L~~~~~~~----~~~---~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 194 QPIELPDFTPEEVQELAQRYGLE----FSQ---EQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cceeCCCCCHHHHHHHHHhhhcc----CCH---HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 57899999999999998876321 112 228999999999999999999999764
No 90
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=77.33 E-value=4.4 Score=34.00 Aligned_cols=48 Identities=19% Similarity=0.219 Sum_probs=32.2
Q ss_pred ceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhhc
Q 039430 51 KRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMG 98 (308)
Q Consensus 51 kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~ 98 (308)
.--++|||||... +......+...+.....++.+||||..+.+...+.
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~ 206 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDAD 206 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-S
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4458999999763 33456667777776666789999999999887764
No 91
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.22 E-value=25 Score=34.44 Aligned_cols=97 Identities=12% Similarity=0.142 Sum_probs=65.6
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEE-EecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILV-TTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-.....+.|...+..-.....+|+ ||....+...+... ...+++..++.++..+.+.+.+...+
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SR--c~~~~F~~l~~~~i~~~L~~i~~~eg 194 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSR--THHYPFRLLPPRTMRALIARICEQEG 194 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHh--ceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 4566899999987766777888888876655665555 54445554443322 26899999999998888877664333
Q ss_pred CCCCchHHHHHHHHHHHcCCChH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILL 151 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPL 151 (308)
... -.+....|++..+|.+-
T Consensus 195 i~i---~~~al~~Ia~~s~GdlR 214 (584)
T PRK14952 195 VVV---DDAVYPLVIRAGGGSPR 214 (584)
T ss_pred CCC---CHHHHHHHHHHcCCCHH
Confidence 221 13456778888888764
No 92
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=77.02 E-value=16 Score=27.33 Aligned_cols=45 Identities=13% Similarity=0.014 Sum_probs=27.5
Q ss_pred cCCceEEEEEecCCCCChHHHHHHHHhhcCC------CCCcEEEEEecchH
Q 039430 48 FNGKRYLLVMDYVWNEDLEAWRKFKSLLLGG------ANGSKILVTTRSRK 92 (308)
Q Consensus 48 L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~------~~gs~IlvTTR~~~ 92 (308)
...+..+||+||++.........+...+... ..+..||+||....
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3456789999999854222233344433332 36778888887653
No 93
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=76.91 E-value=31 Score=34.20 Aligned_cols=103 Identities=14% Similarity=0.177 Sum_probs=66.5
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-..+.++.|...+..-.....+|++|.+ ..+...+... ...+++..++.++....+.+.+...+
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSR--c~~~~f~~l~~~ei~~~L~~ia~keg 197 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISR--CQRFDFRRIPLEAMVQHLSEIAEKES 197 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhh--eeEEEecCCCHHHHHHHHHHHHHHhC
Confidence 45668999999876666788888888765555555555543 3333333221 15788889999888887777664322
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
.... .+.+..|++.++|.+..+...-
T Consensus 198 i~is---~~al~~La~~s~G~lr~A~~lL 223 (620)
T PRK14948 198 IEIE---PEALTLVAQRSQGGLRDAESLL 223 (620)
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2222 2457889999999876554443
No 94
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=76.20 E-value=18 Score=31.81 Aligned_cols=75 Identities=8% Similarity=0.052 Sum_probs=45.5
Q ss_pred eEEEEEecCCCC---------ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhhccC-----CCCceeecCCCCchhhH
Q 039430 52 RYLLVMDYVWNE---------DLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTK-----GGSTGYNLQGLPFEDCL 117 (308)
Q Consensus 52 r~LlVLDdv~~~---------~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~-----~~~~~~~l~~L~~~ea~ 117 (308)
.-+|+||++..- ..+....+...+.....+.+||++|............ .-...+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 469999999621 1223455666666555566777776543322211100 00156899999999999
Q ss_pred hHhhhhhcc
Q 039430 118 SLFMKCACK 126 (308)
Q Consensus 118 ~Lf~~~a~~ 126 (308)
.++...+-.
T Consensus 202 ~I~~~~l~~ 210 (284)
T TIGR02880 202 VIAGLMLKE 210 (284)
T ss_pred HHHHHHHHH
Confidence 998887643
No 95
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=76.16 E-value=13 Score=34.65 Aligned_cols=96 Identities=17% Similarity=0.122 Sum_probs=55.2
Q ss_pred EEEEecCCCCChH-HH-HHHHHhhcC-CCCCcEEEEEecch-HHHh----hhccC-CCCceeecCCCCchhhHhHhhhhh
Q 039430 54 LLVMDYVWNEDLE-AW-RKFKSLLLG-GANGSKILVTTRSR-KVAS----IMGTK-GGSTGYNLQGLPFEDCLSLFMKCA 124 (308)
Q Consensus 54 LlVLDdv~~~~~~-~~-~~l~~~l~~-~~~gs~IlvTTR~~-~va~----~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 124 (308)
+|||||+...... .+ +.+...+.. ...|..+|+||... .... .+... ..+.++.+++.+.++-..++.+.+
T Consensus 202 lLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~ 281 (405)
T TIGR00362 202 LLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKA 281 (405)
T ss_pred EEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 8999999753211 11 223333321 12355688887642 1111 11111 112578999999999999999888
Q ss_pred cccCCCCCchHHHHHHHHHHHcCCChHH
Q 039430 125 CKEERDKHPNLIKIAKEIVKKCGGILLA 152 (308)
Q Consensus 125 ~~~~~~~~~~l~~~~~~I~~~c~glPLa 152 (308)
...+...+ +++...|++.+.|.+-.
T Consensus 282 ~~~~~~l~---~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 282 EEEGLELP---DEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHcCCCCC---HHHHHHHHHhcCCCHHH
Confidence 55433222 46677788888876543
No 96
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=75.08 E-value=24 Score=28.04 Aligned_cols=100 Identities=8% Similarity=0.056 Sum_probs=56.6
Q ss_pred CceEEEEEecC----CCCChHHHHHHHHhhcCCCCCcEEEEEec-chH----HHhhhccCCCCceeecCCCCchhhHhHh
Q 039430 50 GKRYLLVMDYV----WNEDLEAWRKFKSLLLGGANGSKILVTTR-SRK----VASIMGTKGGSTGYNLQGLPFEDCLSLF 120 (308)
Q Consensus 50 ~kr~LlVLDdv----~~~~~~~~~~l~~~l~~~~~gs~IlvTTR-~~~----va~~~~~~~~~~~~~l~~L~~~ea~~Lf 120 (308)
+.+-++|+.+. .......++.+...+.....++.+|+.+. ..+ ....+... ..++...++...+.....
T Consensus 56 ~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~--~~~~~~~~~~~~~~~~~i 133 (172)
T PF06144_consen 56 GDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQ--AIVIECKKPKEQELPRWI 133 (172)
T ss_dssp SSEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTT--EEEEEE----TTTHHHHH
T ss_pred CCCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcc--cceEEecCCCHHHHHHHH
Confidence 46677777776 22223568889998888778888888877 322 22233221 256778888888888888
Q ss_pred hhhhcccCCCCCchHHHHHHHHHHHcCCChHHHH
Q 039430 121 MKCACKEERDKHPNLIKIAKEIVKKCGGILLAVK 154 (308)
Q Consensus 121 ~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 154 (308)
...+-..+.. --.+.+..+++..++.+.++.
T Consensus 134 ~~~~~~~g~~---i~~~a~~~L~~~~~~d~~~l~ 164 (172)
T PF06144_consen 134 KERAKKNGLK---IDPDAAQYLIERVGNDLSLLQ 164 (172)
T ss_dssp HHHHHHTT-E---E-HHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHcCCC---CCHHHHHHHHHHhChHHHHHH
Confidence 7777544332 233567788888888776664
No 97
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=75.02 E-value=56 Score=28.40 Aligned_cols=145 Identities=13% Similarity=0.104 Sum_probs=82.2
Q ss_pred CCCCHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHHHc-CCce-EEEEEecCCCCChHHHHHHHHhhcCCCCCc---EE
Q 039430 12 VDFGERQIMTKIINSITGENQS--NLDPDRLQKVLRDSF-NGKR-YLLVMDYVWNEDLEAWRKFKSLLLGGANGS---KI 84 (308)
Q Consensus 12 ~~~~~~~ll~~il~~l~~~~~~--~~~~~~~~~~l~~~L-~~kr-~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs---~I 84 (308)
+..+...+...|+..+..+... ..-.+++...|.... +++| ..+++|+..+...+..+.++-.......++ +|
T Consensus 88 ~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~i 167 (269)
T COG3267 88 PTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSI 167 (269)
T ss_pred cchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceee
Confidence 3456677888888877653211 112333444444444 4677 899999998766556666554433222222 23
Q ss_pred EEEecc---h----HHHhhhccCCCCce-eecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 039430 85 LVTTRS---R----KVASIMGTKGGSTG-YNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTL 156 (308)
Q Consensus 85 lvTTR~---~----~va~~~~~~~~~~~-~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~i 156 (308)
+..-.- . .+....+.. ..+ |.+.|++.++.-..+.....+.....+--..+....|.....|.|.+|..+
T Consensus 168 vL~Gqp~L~~~lr~~~l~e~~~R--~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~ 245 (269)
T COG3267 168 VLIGQPKLRPRLRLPVLRELEQR--IDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNL 245 (269)
T ss_pred eecCCcccchhhchHHHHhhhhe--EEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHH
Confidence 322211 1 011111111 123 899999999888877777665532222223456678889999999999877
Q ss_pred hh
Q 039430 157 GS 158 (308)
Q Consensus 157 g~ 158 (308)
+.
T Consensus 246 ~~ 247 (269)
T COG3267 246 AT 247 (269)
T ss_pred HH
Confidence 64
No 98
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=74.73 E-value=89 Score=30.61 Aligned_cols=102 Identities=14% Similarity=0.138 Sum_probs=67.5
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEec-chHHHhhhccCCCCceeecCCCCchhhHhHhhhhhccc
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTR-SRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKE 127 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR-~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 127 (308)
.+++-++|+|++..-+...++.|...+......+.+|.+|. ...+...+... ...+++.+++.++....+.+.+...
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SR--c~~~~f~~l~~~el~~~L~~i~~~e 194 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSR--CQHFNFRLLSLEKIYNMLKKVCLED 194 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHh--ceEEEecCCCHHHHHHHHHHHHHHc
Confidence 35667899999987666677788888776555666665554 34444333221 2578999999999888888766433
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHHH
Q 039430 128 ERDKHPNLIKIAKEIVKKCGGILLAVKT 155 (308)
Q Consensus 128 ~~~~~~~l~~~~~~I~~~c~glPLai~~ 155 (308)
+... -.+.+..|++.++|.+-.+..
T Consensus 195 gi~i---d~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 195 QIKY---EDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred CCCC---CHHHHHHHHHHcCCCHHHHHH
Confidence 3222 235667788899997754433
No 99
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=74.20 E-value=8.9 Score=30.68 Aligned_cols=50 Identities=14% Similarity=0.213 Sum_probs=32.8
Q ss_pred HHHHHcCCce-EEEEEecCCCC---ChHHHHHHHHhhcCCCCCcEEEEEecchH
Q 039430 43 VLRDSFNGKR-YLLVMDYVWNE---DLEAWRKFKSLLLGGANGSKILVTTRSRK 92 (308)
Q Consensus 43 ~l~~~L~~kr-~LlVLDdv~~~---~~~~~~~l~~~l~~~~~gs~IlvTTR~~~ 92 (308)
..++.+.... =|||||.+-.. ..-..+.+...+.....+.-||+|.|+..
T Consensus 86 ~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 86 FAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 3444454444 59999998542 12234567777776666778999999854
No 100
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=74.13 E-value=42 Score=31.73 Aligned_cols=93 Identities=10% Similarity=0.018 Sum_probs=51.1
Q ss_pred EEEEEecCCCCChHHH--HHHHHhhcC-CCCCcEEEEEecch-H----HHhhhccC-CCCceeecCCCCchhhHhHhhhh
Q 039430 53 YLLVMDYVWNEDLEAW--RKFKSLLLG-GANGSKILVTTRSR-K----VASIMGTK-GGSTGYNLQGLPFEDCLSLFMKC 123 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~--~~l~~~l~~-~~~gs~IlvTTR~~-~----va~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 123 (308)
-+|++||+.......+ +.+...+.. ...|..||+||... . +...+... ..+.++.+.+++.++-..++.+.
T Consensus 204 dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k 283 (445)
T PRK12422 204 DALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERK 283 (445)
T ss_pred CEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHH
Confidence 4888999865321111 223333211 12355688888542 1 11222111 12368899999999999999888
Q ss_pred hcccCCCCCchHHHHHHHHHHHcCC
Q 039430 124 ACKEERDKHPNLIKIAKEIVKKCGG 148 (308)
Q Consensus 124 a~~~~~~~~~~l~~~~~~I~~~c~g 148 (308)
+-..+...+ .++..-|++.+.|
T Consensus 284 ~~~~~~~l~---~evl~~la~~~~~ 305 (445)
T PRK12422 284 AEALSIRIE---ETALDFLIEALSS 305 (445)
T ss_pred HHHcCCCCC---HHHHHHHHHhcCC
Confidence 754432222 2445556666654
No 101
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=71.59 E-value=77 Score=28.54 Aligned_cols=72 Identities=10% Similarity=0.184 Sum_probs=51.8
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecch-HHHhhhccCCCCceeecCCCCchhhHhHhhh
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSR-KVASIMGTKGGSTGYNLQGLPFEDCLSLFMK 122 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 122 (308)
.+.+=++|+|++..-+...-+.|...+..-..++.+|++|.+. .+...+... ...+++.+++.++..+.+.+
T Consensus 108 ~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSR--c~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 108 ESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSR--CQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhh--ceeeeCCCCCHHHHHHHHHH
Confidence 3456689999997776667778888888767777777777653 333333222 26799999999998877765
No 102
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=71.52 E-value=38 Score=33.07 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=64.9
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEE-EecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhccc
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILV-TTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKE 127 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 127 (308)
.+++-++|+|++..-....+..|...+..-.....+|+ ||....+...+... ...+.+.+++.++....+...+-..
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SR--c~~~~f~~~~~~ei~~~L~~i~~~e 194 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSR--CQRFDFKRISVEDIVERLKYILDKE 194 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhH--heEEecCCCCHHHHHHHHHHHHHHc
Confidence 45677889999987665677788877765544555554 44444444333211 1568899999999888888776433
Q ss_pred CCCCCchHHHHHHHHHHHcCCChHHHH
Q 039430 128 ERDKHPNLIKIAKEIVKKCGGILLAVK 154 (308)
Q Consensus 128 ~~~~~~~l~~~~~~I~~~c~glPLai~ 154 (308)
+.... .+.+..|++.++|.+..+.
T Consensus 195 gi~i~---~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 195 GIEYE---DEALRLIARAAEGGMRDAL 218 (559)
T ss_pred CCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 32222 3556778888888765443
No 103
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=70.03 E-value=76 Score=27.78 Aligned_cols=117 Identities=9% Similarity=0.028 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHH-cCCceEEEEEecCCCCC-hHHHHHHHHhhcCCCCCcEEEEEecchHHH----hhhccCCCCceeec
Q 039430 35 LDPDRLQKVLRDS-FNGKRYLLVMDYVWNED-LEAWRKFKSLLLGGANGSKILVTTRSRKVA----SIMGTKGGSTGYNL 108 (308)
Q Consensus 35 ~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~-~~~~~~l~~~l~~~~~gs~IlvTTR~~~va----~~~~~~~~~~~~~l 108 (308)
.+.+++...+... |-+.+-++|+++..... ...++.+...+.....+..+|+++-..+.. ..........++..
T Consensus 29 ~~~~~l~~~~~~~slf~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~ 108 (302)
T TIGR01128 29 FDWNQLLEEAQTLPLFSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVEC 108 (302)
T ss_pred CCHHHHHHHhhccCcccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEe
Confidence 4555555555443 55677889999986632 245788888887766666667666432111 11111011267788
Q ss_pred CCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHH
Q 039430 109 QGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVK 154 (308)
Q Consensus 109 ~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 154 (308)
.+++..+-.....+.+-..+.... .+.+..|++.++|-...+.
T Consensus 109 ~~~~~~~~~~~i~~~~~~~g~~i~---~~a~~~l~~~~~~d~~~l~ 151 (302)
T TIGR01128 109 KTPKEQELPRWIQARLKKLGLRID---PDAVQLLAELVEGNLLAIA 151 (302)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCcHHHHHH
Confidence 888888888887777654433222 2456777778877665554
No 104
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=67.27 E-value=27 Score=33.04 Aligned_cols=97 Identities=14% Similarity=0.110 Sum_probs=55.7
Q ss_pred EEEEEecCCCCCh-HHH-HHHHHhhcC-CCCCcEEEEEecchH--HH---hhhccC-CCCceeecCCCCchhhHhHhhhh
Q 039430 53 YLLVMDYVWNEDL-EAW-RKFKSLLLG-GANGSKILVTTRSRK--VA---SIMGTK-GGSTGYNLQGLPFEDCLSLFMKC 123 (308)
Q Consensus 53 ~LlVLDdv~~~~~-~~~-~~l~~~l~~-~~~gs~IlvTTR~~~--va---~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~ 123 (308)
-+|||||+..... ..+ +.+...+.. ...|..||+||.... +. ..+... ..+.++.+++++.++-..++.+.
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 3899999965311 111 233332221 123455888876532 11 111111 12267999999999999999998
Q ss_pred hcccCCCCCchHHHHHHHHHHHcCCChHH
Q 039430 124 ACKEERDKHPNLIKIAKEIVKKCGGILLA 152 (308)
Q Consensus 124 a~~~~~~~~~~l~~~~~~I~~~c~glPLa 152 (308)
+...+...+ +++...|++.++|..-.
T Consensus 293 ~~~~~~~l~---~e~l~~ia~~~~~~~R~ 318 (450)
T PRK00149 293 AEEEGIDLP---DEVLEFIAKNITSNVRE 318 (450)
T ss_pred HHHcCCCCC---HHHHHHHHcCcCCCHHH
Confidence 854332222 35677888888876543
No 105
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=66.99 E-value=94 Score=27.69 Aligned_cols=138 Identities=9% Similarity=0.128 Sum_probs=84.2
Q ss_pred EEeCCCCCHHHHHHHHHHHhcC--------CC-----------CCCCCHHHHHHHHHHH-c-C---CceEEEEEecCCCC
Q 039430 8 ICVSVDFGERQIMTKIINSITG--------EN-----------QSNLDPDRLQKVLRDS-F-N---GKRYLLVMDYVWNE 63 (308)
Q Consensus 8 V~vs~~~~~~~ll~~il~~l~~--------~~-----------~~~~~~~~~~~~l~~~-L-~---~kr~LlVLDdv~~~ 63 (308)
.+..+..........+++.+-+ .. ......+++.+...+. . . +.+-++|+|++...
T Consensus 23 f~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m 102 (299)
T PRK07132 23 LKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKT 102 (299)
T ss_pred EeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEEeccccc
Confidence 4555667777788888887721 10 1123345555444433 1 1 47788999999777
Q ss_pred ChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHH
Q 039430 64 DLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEI 142 (308)
Q Consensus 64 ~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I 142 (308)
+......+...+..-..++.+|++|.+ ..+....... ..++++.++++++....+... . . ++ +.+..+
T Consensus 103 ~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SR--c~~~~f~~l~~~~l~~~l~~~-~---~--~~---~~a~~~ 171 (299)
T PRK07132 103 SNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSR--CQVFNVKEPDQQKILAKLLSK-N---K--EK---EYNWFY 171 (299)
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhC--eEEEECCCCCHHHHHHHHHHc-C---C--Ch---hHHHHH
Confidence 666777888888877777777766644 4444333221 278999999999988777653 1 1 11 235555
Q ss_pred HHHcCCChHHHHHH
Q 039430 143 VKKCGGILLAVKTL 156 (308)
Q Consensus 143 ~~~c~glPLai~~i 156 (308)
+...+|.=-|+..+
T Consensus 172 a~~~~~~~~a~~~~ 185 (299)
T PRK07132 172 AYIFSNFEQAEKYI 185 (299)
T ss_pred HHHcCCHHHHHHHH
Confidence 65666633455443
No 106
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.57 E-value=1.4e+02 Score=29.42 Aligned_cols=102 Identities=16% Similarity=0.191 Sum_probs=65.5
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEE-EecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILV-TTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv-TTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-+....+.|...+..-...+.+|+ ||....+...+... ...+++.+++.++....+...+...+
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SR--c~~~~f~~l~~~~i~~~L~~i~~~eg 195 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSR--CQRFDFRRIPLQKIVDRLRYIADQEG 195 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHh--hhhhhcCCCCHHHHHHHHHHHHHHhC
Confidence 4556899999977665667778888876555565554 55555555443322 25788999999998888776653332
Q ss_pred CCCCchHHHHHHHHHHHcCCCh-HHHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGIL-LAVKTL 156 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glP-Lai~~i 156 (308)
... -.+....|++.++|.. .|+..+
T Consensus 196 i~i---~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 196 ISI---SDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred CCC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence 221 2345677888888855 444433
No 107
>CHL00181 cbbX CbbX; Provisional
Probab=65.09 E-value=56 Score=28.83 Aligned_cols=75 Identities=8% Similarity=0.077 Sum_probs=45.9
Q ss_pred eEEEEEecCCCC---------ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhh------ccCCCCceeecCCCCchhh
Q 039430 52 RYLLVMDYVWNE---------DLEAWRKFKSLLLGGANGSKILVTTRSRKVASIM------GTKGGSTGYNLQGLPFEDC 116 (308)
Q Consensus 52 r~LlVLDdv~~~---------~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~------~~~~~~~~~~l~~L~~~ea 116 (308)
.-+|++|++..- ..+.-..|...+.....+.+||+++....+.... ... -...+.+++++.+|.
T Consensus 123 ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR-~~~~i~F~~~t~~el 201 (287)
T CHL00181 123 GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSR-IANHVDFPDYTPEEL 201 (287)
T ss_pred CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHh-CCceEEcCCcCHHHH
Confidence 359999999541 1122334455555555566777777654442211 111 115789999999999
Q ss_pred HhHhhhhhccc
Q 039430 117 LSLFMKCACKE 127 (308)
Q Consensus 117 ~~Lf~~~a~~~ 127 (308)
.+++...+-..
T Consensus 202 ~~I~~~~l~~~ 212 (287)
T CHL00181 202 LQIAKIMLEEQ 212 (287)
T ss_pred HHHHHHHHHHh
Confidence 99988877543
No 108
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=63.19 E-value=58 Score=30.12 Aligned_cols=150 Identities=12% Similarity=0.155 Sum_probs=77.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCCCCC-------CCHHHHHHHHHH--HcC--CceEEEEEecCCCCChHHHHH-HH
Q 039430 5 KIWICVSVDFGERQIMTKIINSITGENQSN-------LDPDRLQKVLRD--SFN--GKRYLLVMDYVWNEDLEAWRK-FK 72 (308)
Q Consensus 5 ~~WV~vs~~~~~~~ll~~il~~l~~~~~~~-------~~~~~~~~~l~~--~L~--~kr~LlVLDdv~~~~~~~~~~-l~ 72 (308)
-+|+++-+.++.+.++..|+.+++..+..+ ....+....+.+ ... ++.++||||++..-. +.+. +.
T Consensus 58 ~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr--D~~a~ll 135 (438)
T KOG2543|consen 58 NVWLNCVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR--DMDAILL 135 (438)
T ss_pred ceeeehHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh--ccchHHH
Confidence 479999999999999999999985221111 122233444444 222 358999999996532 1111 11
Q ss_pred Hhh---c--CCCCCcEEEEEecc--hHHH-hhhccCCCCceeecCCCCchhhHhHhhhhhcccCC-CCCchHHH-HHHHH
Q 039430 73 SLL---L--GGANGSKILVTTRS--RKVA-SIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEER-DKHPNLIK-IAKEI 142 (308)
Q Consensus 73 ~~l---~--~~~~gs~IlvTTR~--~~va-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~l~~-~~~~I 142 (308)
..+ + -+.+.. +|+++-- +... ..+++. ...++.....+.+|-..++.+.--+... ......-. +..-.
T Consensus 136 ~~l~~L~el~~~~~i-~iils~~~~e~~y~~n~g~~-~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF 213 (438)
T KOG2543|consen 136 QCLFRLYELLNEPTI-VIILSAPSCEKQYLINTGTL-EIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVF 213 (438)
T ss_pred HHHHHHHHHhCCCce-EEEEeccccHHHhhcccCCC-CceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHH
Confidence 111 1 122333 3333332 2221 113443 2256778888999988888765321100 00011222 23334
Q ss_pred HHHcCCChHHHHHHhhh
Q 039430 143 VKKCGGILLAVKTLGSL 159 (308)
Q Consensus 143 ~~~c~glPLai~~ig~~ 159 (308)
..-|+ -+-++..++..
T Consensus 214 ~~~cr-d~~eL~~~~~~ 229 (438)
T KOG2543|consen 214 YMACR-DVNELRSLISL 229 (438)
T ss_pred HHHhC-CHHHHHHHHHH
Confidence 45565 55566655543
No 109
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=62.17 E-value=60 Score=29.28 Aligned_cols=72 Identities=13% Similarity=0.156 Sum_probs=47.1
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchH-HHhhhccCCCCceeecCCCCchhhHhHhhhh
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRK-VASIMGTKGGSTGYNLQGLPFEDCLSLFMKC 123 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 123 (308)
+++-++|+|++..-+...-..+...+.....++.+|++|.+.. +...+... ...+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SR--c~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSR--CRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHH--hhhhcCCCCCHHHHHHHHHhc
Confidence 3444556688877666666677777765445566777777644 44333221 267899999999998888653
No 110
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=60.76 E-value=20 Score=28.56 Aligned_cols=74 Identities=12% Similarity=0.171 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHcC-----CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchH-HHhhhccCCCCceeecC
Q 039430 36 DPDRLQKVLRDSFN-----GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRK-VASIMGTKGGSTGYNLQ 109 (308)
Q Consensus 36 ~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~~l~ 109 (308)
..+++. .+.+.+. +++=++|+||+.....+....|+..+..-..++.+|++|++.+ +....... ...+.+.
T Consensus 83 ~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SR--c~~i~~~ 159 (162)
T PF13177_consen 83 KIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSR--CQVIRFR 159 (162)
T ss_dssp SHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTT--SEEEEE-
T ss_pred hHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhh--ceEEecC
Confidence 455555 4555443 3567999999998888889999999988888899988888754 33333221 1456665
Q ss_pred CCC
Q 039430 110 GLP 112 (308)
Q Consensus 110 ~L~ 112 (308)
+|+
T Consensus 160 ~ls 162 (162)
T PF13177_consen 160 PLS 162 (162)
T ss_dssp ---
T ss_pred CCC
Confidence 553
No 111
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=59.66 E-value=52 Score=30.46 Aligned_cols=96 Identities=15% Similarity=0.062 Sum_probs=53.1
Q ss_pred CceEEEEEecCCCC-----------ChHHHHHHHHhhcC-----CCCCcEEEEEecchHHHhhh--ccCCCCceeecCCC
Q 039430 50 GKRYLLVMDYVWNE-----------DLEAWRKFKSLLLG-----GANGSKILVTTRSRKVASIM--GTKGGSTGYNLQGL 111 (308)
Q Consensus 50 ~kr~LlVLDdv~~~-----------~~~~~~~l~~~l~~-----~~~gs~IlvTTR~~~va~~~--~~~~~~~~~~l~~L 111 (308)
....+|+||++..- +.+....+...+.. ...+..||.||...+..... ....-+..+.++..
T Consensus 223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P 302 (389)
T PRK03992 223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP 302 (389)
T ss_pred cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence 45689999999642 11112223333321 12355677777665433221 11111267999999
Q ss_pred CchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCC
Q 039430 112 PFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGI 149 (308)
Q Consensus 112 ~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~gl 149 (308)
+.++-.++|+.++.......... ...+++.+.|.
T Consensus 303 ~~~~R~~Il~~~~~~~~~~~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 303 DEEGRLEILKIHTRKMNLADDVD----LEELAELTEGA 336 (389)
T ss_pred CHHHHHHHHHHHhccCCCCCcCC----HHHHHHHcCCC
Confidence 99999999988765432221122 35566666664
No 112
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=59.55 E-value=1.3e+02 Score=26.66 Aligned_cols=71 Identities=10% Similarity=0.188 Sum_probs=42.0
Q ss_pred CceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchH-HHhhhccCCCCceeecCCCCchhhHhHhhh
Q 039430 50 GKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRK-VASIMGTKGGSTGYNLQGLPFEDCLSLFMK 122 (308)
Q Consensus 50 ~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 122 (308)
+.+-+||+|++... ..+....+...+.....++++|+||.... +...+... ...+.+...+.++...++..
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR--~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR--CRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh--ceEEEeCCCCHHHHHHHHHH
Confidence 34568999999754 22233445555655566788888886533 22222221 14677777788877666543
No 113
>PRK07914 hypothetical protein; Reviewed
Probab=58.90 E-value=1.3e+02 Score=26.78 Aligned_cols=150 Identities=10% Similarity=0.066 Sum_probs=80.2
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhcCC-CC----------CCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHH
Q 039430 2 FELKIWICVSVDFGERQIMTKIINSITGE-NQ----------SNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRK 70 (308)
Q Consensus 2 Fd~~~WV~vs~~~~~~~ll~~il~~l~~~-~~----------~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~ 70 (308)
|..+..+.-.+++-+.+..+.|...+... .. .+.+.+++.+...--+-+.|-+++++|.........+.
T Consensus 4 l~~iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~n~~~~d~~~~~~~~i~~~~t~plF~~rRlV~v~~~~~~~~~~~~~ 83 (320)
T PRK07914 4 PAPLHLVLGDEELLVERAVAAVLRSARQRAGTADVPVSRMRAGDVSTYELAELLSPSLFAEERVVVLEAAAEAGKDAAAL 83 (320)
T ss_pred CCceEEEEecHHHHHHHHHHHHHHHHhcCcCCCCCceEEeccccCCHHHHHHhcCCCCCCCceEEEEeChHhccHHHHHH
Confidence 45566777777777778888887765321 11 12233333222111134566677788764332223455
Q ss_pred HHHhhcCCCCCcEEEEEe----cchHHHhhhccCCCCceeecCCC-CchhhHhHhhhhhcccCCCCCchHHHHHHHHHHH
Q 039430 71 FKSLLLGGANGSKILVTT----RSRKVASIMGTKGGSTGYNLQGL-PFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKK 145 (308)
Q Consensus 71 l~~~l~~~~~gs~IlvTT----R~~~va~~~~~~~~~~~~~l~~L-~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~ 145 (308)
+...+......+.+|+++ +...+.+.+... +..++...++ +..+.-.+..+.+-..+.... .+.+..+++.
T Consensus 84 l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~-g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~---~~A~~~L~~~ 159 (320)
T PRK07914 84 ILSAAADLPPGTVLVVVHSGGGRAKALANQLRKL-GAEVHPCARITKAAERADFVRKEFRSLRVKVD---DDTVTALLDA 159 (320)
T ss_pred HHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHC-CCEEEecCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Confidence 666666555545555543 222222222221 1135677777 777777777777754433322 2456667777
Q ss_pred cCCChHHHHH
Q 039430 146 CGGILLAVKT 155 (308)
Q Consensus 146 c~glPLai~~ 155 (308)
+||...++..
T Consensus 160 ~g~dl~~l~~ 169 (320)
T PRK07914 160 VGSDLRELAS 169 (320)
T ss_pred HCccHHHHHH
Confidence 7776666554
No 114
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=58.35 E-value=1.1e+02 Score=26.30 Aligned_cols=75 Identities=9% Similarity=0.084 Sum_probs=42.0
Q ss_pred eEEEEEecCCCCC--------hHHHHHHHHhhcCCCCCcEEEEEecchHHHh------hhccCCCCceeecCCCCchhhH
Q 039430 52 RYLLVMDYVWNED--------LEAWRKFKSLLLGGANGSKILVTTRSRKVAS------IMGTKGGSTGYNLQGLPFEDCL 117 (308)
Q Consensus 52 r~LlVLDdv~~~~--------~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~------~~~~~~~~~~~~l~~L~~~ea~ 117 (308)
..+|++|++..-. .+..+.+...+........+++++...+... ...... ...+.+++++.++-.
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf-~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRF-PISIDFPDYTVEELM 184 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhcc-ceEEEECCCCHHHHH
Confidence 3589999996411 1223344444444433445566654433211 111111 146889999999999
Q ss_pred hHhhhhhccc
Q 039430 118 SLFMKCACKE 127 (308)
Q Consensus 118 ~Lf~~~a~~~ 127 (308)
+++.+.+...
T Consensus 185 ~Il~~~~~~~ 194 (261)
T TIGR02881 185 EIAERMVKER 194 (261)
T ss_pred HHHHHHHHHc
Confidence 9998777443
No 115
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=58.00 E-value=41 Score=28.71 Aligned_cols=104 Identities=16% Similarity=0.163 Sum_probs=51.6
Q ss_pred CceEEEEEecCCCCC-hHH----HHHHHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhh
Q 039430 50 GKRYLLVMDYVWNED-LEA----WRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCA 124 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~-~~~----~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 124 (308)
+++-|+++|.+.... ..+ -..+...|.. ..++.+|+||...+++...........++++....++......+..
T Consensus 121 ~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~-~~~~~~i~~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~~~f~Ykl~ 199 (235)
T PF00488_consen 121 TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLE-KSGCFVIIATHFHELAELLERNPNVQNYHMEVEEDNDSLTFTYKLK 199 (235)
T ss_dssp -TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHH-TTT-EEEEEES-GGGGGHHHHSTTEEEEEEEEEEETTEEEEEEEEE
T ss_pred ccceeeecccccCCCChhHHHHHHHHHHHHHHH-hccccEEEEeccchhHHHhhhCccccccceeeeeeccccceeEEEe
Confidence 478899999997642 111 1112333332 2578999999999998775443222234444443333332222222
Q ss_pred cccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhhhc
Q 039430 125 CKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLY 161 (308)
Q Consensus 125 ~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L~ 161 (308)
-|... ...|-++++++ |+|-.+..-|..+.
T Consensus 200 ~G~~~------~S~ai~iA~~~-g~p~~II~rA~~i~ 229 (235)
T PF00488_consen 200 EGICS------SSYAIEIAKLA-GLPEEIIERAKEIL 229 (235)
T ss_dssp ES--S------STCHHHHHHHT-T--HHHHHHHHHHH
T ss_pred ECCCC------CcHHHHHHHHh-CcCHHHHHHHHHHH
Confidence 11111 12366777766 77877776665543
No 116
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=57.96 E-value=80 Score=30.04 Aligned_cols=113 Identities=12% Similarity=0.042 Sum_probs=58.0
Q ss_pred CHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCc--eEEEEEecCCCCChHHHHHHHHhhcC-CCCCcEEEEEecch
Q 039430 15 GERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGK--RYLLVMDYVWNEDLEAWRKFKSLLLG-GANGSKILVTTRSR 91 (308)
Q Consensus 15 ~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~L~~k--r~LlVLDdv~~~~~~~~~~l~~~l~~-~~~gs~IlvTTR~~ 91 (308)
....++..|...+-..........+.++.+.+...+. -+|+|||..+.-.-..-..+...|.+ .-.++++|+.---.
T Consensus 218 ~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiAN 297 (529)
T KOG2227|consen 218 EASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIAN 297 (529)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehh
Confidence 4566777777776221111222255667777777664 48999997743100000011111211 22455555432211
Q ss_pred HH--H----hhhcc--CCCCceeecCCCCchhhHhHhhhhhccc
Q 039430 92 KV--A----SIMGT--KGGSTGYNLQGLPFEDCLSLFMKCACKE 127 (308)
Q Consensus 92 ~v--a----~~~~~--~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 127 (308)
.+ . ..+.. .-...++...+.+.++-.++|+..+-..
T Consensus 298 slDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 298 SLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred hhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 10 0 01111 1122678899999999999999887543
No 117
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=57.60 E-value=1.4e+02 Score=26.71 Aligned_cols=150 Identities=12% Similarity=0.080 Sum_probs=83.8
Q ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhcCCC------CCCCCHHHHHHHHHHH-cCCceEEEEEecCCCCChHHHHHHHHh
Q 039430 2 FELKIWICVSVDFGERQIMTKIINSITGEN------QSNLDPDRLQKVLRDS-FNGKRYLLVMDYVWNEDLEAWRKFKSL 74 (308)
Q Consensus 2 Fd~~~WV~vs~~~~~~~ll~~il~~l~~~~------~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~~~~~~~~~l~~~ 74 (308)
|..+..+...+.+=+.+..+.|...+.... .+..+.+++...+... +=+.|-++|+.|........++.+...
T Consensus 15 l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~plF~~~rlViv~~~~~~~~~~~~~L~~~ 94 (328)
T PRK08487 15 LPNAFLLYGEDEFQIELYAKKISEKFKPENELKTLYFDEYDFEQAKDFLSQSSLFGGKNLLIIKLDKKIPKKELKLLIEL 94 (328)
T ss_pred CCceEEEecCchhHHHHHHHHHHHHhcCchHhhhhchhhccHHHHHHHHhcccccCCceEEEEecccccCHHHHHHHHHH
Confidence 455666667777778888888887764321 1223445555555443 334445555555432222456777777
Q ss_pred hcCCCCCcEEEEE-ecch----HHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCC
Q 039430 75 LLGGANGSKILVT-TRSR----KVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGI 149 (308)
Q Consensus 75 l~~~~~gs~IlvT-TR~~----~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~gl 149 (308)
+.... .+.+||. .... .+.+.......+..+...++++.+...+..+.+-..+.... .+.+..++..+||.
T Consensus 95 l~~~~-~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~---~~a~~~L~~~~g~d 170 (328)
T PRK08487 95 CEKNS-DNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQERAKELGLDID---QNALNHLYFIHNED 170 (328)
T ss_pred HhcCC-CCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHhCcH
Confidence 75543 4556554 3222 12222222111246777778887777777777754443322 35677788888876
Q ss_pred hHHHHH
Q 039430 150 LLAVKT 155 (308)
Q Consensus 150 PLai~~ 155 (308)
-.++..
T Consensus 171 l~~l~~ 176 (328)
T PRK08487 171 LALAAN 176 (328)
T ss_pred HHHHHH
Confidence 665543
No 118
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=57.57 E-value=1e+02 Score=29.08 Aligned_cols=96 Identities=11% Similarity=-0.013 Sum_probs=53.7
Q ss_pred ceEEEEEecCCCCC-hHHH-HHHHHhhcC-CCCCcEEEEEec-chHHHh----hhccC-CCCceeecCCCCchhhHhHhh
Q 039430 51 KRYLLVMDYVWNED-LEAW-RKFKSLLLG-GANGSKILVTTR-SRKVAS----IMGTK-GGSTGYNLQGLPFEDCLSLFM 121 (308)
Q Consensus 51 kr~LlVLDdv~~~~-~~~~-~~l~~~l~~-~~~gs~IlvTTR-~~~va~----~~~~~-~~~~~~~l~~L~~~ea~~Lf~ 121 (308)
+.-+|++||+.... ...+ +.+...+.. ...|..||+||. ...-.. .+... ..+.++.+++.+.+.-..+++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 34589999997421 0112 223333221 123456888874 322221 11111 112578999999999999999
Q ss_pred hhhcccCCCCCchHHHHHHHHHHHcCCC
Q 039430 122 KCACKEERDKHPNLIKIAKEIVKKCGGI 149 (308)
Q Consensus 122 ~~a~~~~~~~~~~l~~~~~~I~~~c~gl 149 (308)
+.+...+...+ .++...|++.+.|.
T Consensus 274 ~~~~~~~~~l~---~ev~~~Ia~~~~~~ 298 (440)
T PRK14088 274 KMLEIEHGELP---EEVLNFVAENVDDN 298 (440)
T ss_pred HHHHhcCCCCC---HHHHHHHHhccccC
Confidence 88754332222 35677788777764
No 119
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=57.50 E-value=34 Score=28.32 Aligned_cols=51 Identities=12% Similarity=0.085 Sum_probs=34.0
Q ss_pred HHHHHHHcCCce-EEEEEecCCCC---ChHHHHHHHHhhcCCCCCcEEEEEecch
Q 039430 41 QKVLRDSFNGKR-YLLVMDYVWNE---DLEAWRKFKSLLLGGANGSKILVTTRSR 91 (308)
Q Consensus 41 ~~~l~~~L~~kr-~LlVLDdv~~~---~~~~~~~l~~~l~~~~~gs~IlvTTR~~ 91 (308)
.+..++.+...+ =|+|||.+-.. ..-..+.+...+.....+.-||+|-|+.
T Consensus 104 ~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 104 WEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 344455555544 59999988431 1223566777777666778999999985
No 120
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=57.17 E-value=1e+02 Score=26.35 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHhhcCC--------CCC-----------cEEEEEecchHHHhhh
Q 039430 37 PDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGG--------ANG-----------SKILVTTRSRKVASIM 97 (308)
Q Consensus 37 ~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~--------~~g-----------s~IlvTTR~~~va~~~ 97 (308)
..+++..+.. ++ ++-+|.+|.+-.-+...-+.|..++.++ +.+ +-|=.|||...+...+
T Consensus 89 ~~dl~~il~~-l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pL 166 (233)
T PF05496_consen 89 AGDLAAILTN-LK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPL 166 (233)
T ss_dssp CHHHHHHHHT----TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCC
T ss_pred HHHHHHHHHh-cC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhH
Confidence 3445544433 33 4568888999765433344455554432 111 2355688887776666
Q ss_pred ccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhhh
Q 039430 98 GTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLL 160 (308)
Q Consensus 98 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L 160 (308)
...++ .+.+++..+.+|-..+..+.+..-+. +-..+.+.+|+++|.|-|--..-+-...
T Consensus 167 rdRFg-i~~~l~~Y~~~el~~Iv~r~a~~l~i---~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 167 RDRFG-IVLRLEFYSEEELAKIVKRSARILNI---EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp CTTSS-EEEE----THHHHHHHHHHCCHCTT----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred Hhhcc-eecchhcCCHHHHHHHHHHHHHHhCC---CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 55432 45689999999999999887744332 2335778999999999996554444333
No 121
>cd05141 Barstar_evA4336-like Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp. EvN1. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=56.53 E-value=64 Score=22.36 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=49.4
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHc--CCceEEEEEecCCC---CChHHHHHHHHhh
Q 039430 8 ICVSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSF--NGKRYLLVMDYVWN---EDLEAWRKFKSLL 75 (308)
Q Consensus 8 V~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~---~~~~~~~~l~~~l 75 (308)
+..+.-.+...+++.+.+.++.+..=..+.+.+...|...- .+++..|++.+... ...+.++.+...|
T Consensus 3 idg~~i~~~~~~~~~l~~~l~fP~yfG~NlDAl~DcL~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~vl 75 (81)
T cd05141 3 LDLSGIADKAALLDALAAALDFPSWFGHNWDALADCLTDLSWWPAEGYVLVLRDGDALRAADPEDFATLLEIL 75 (81)
T ss_pred EecccCCCHHHHHHHHHHHcCCCccccCCHHHHHHHHcCcccCCCCCeEEEEeCcHHhhhcCHHHHHHHHHHH
Confidence 45667778889999999999766666678888888887763 56778888888752 3345566665554
No 122
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=56.35 E-value=21 Score=28.95 Aligned_cols=52 Identities=15% Similarity=0.242 Sum_probs=30.6
Q ss_pred HHHHHHHcCCceE-EEEEecCCC---CChHHHHHHHHhhcCCCCCcEEEEEecchH
Q 039430 41 QKVLRDSFNGKRY-LLVMDYVWN---EDLEAWRKFKSLLLGGANGSKILVTTRSRK 92 (308)
Q Consensus 41 ~~~l~~~L~~kr~-LlVLDdv~~---~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~ 92 (308)
.+..++.+...+| |||||.+-. ...-..+.+...+.....+.-||+|-|+..
T Consensus 85 ~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 85 LEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAP 140 (172)
T ss_dssp HHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--
T ss_pred HHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCC
Confidence 3445556655554 999998743 122345677777777778889999999864
No 123
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=56.17 E-value=33 Score=28.00 Aligned_cols=50 Identities=12% Similarity=0.089 Sum_probs=33.6
Q ss_pred HHHHHHcCC-ceEEEEEecCCCC---ChHHHHHHHHhhcCCCCCcEEEEEecch
Q 039430 42 KVLRDSFNG-KRYLLVMDYVWNE---DLEAWRKFKSLLLGGANGSKILVTTRSR 91 (308)
Q Consensus 42 ~~l~~~L~~-kr~LlVLDdv~~~---~~~~~~~l~~~l~~~~~gs~IlvTTR~~ 91 (308)
+..++.+.. +-=|||||.+-.. ..-+.+.+...+.....+.-||+|-|+.
T Consensus 105 ~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~~rp~~~evILTGR~~ 158 (178)
T PRK07414 105 QYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLEKRPSHVDVILTGPEM 158 (178)
T ss_pred HHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEECCCC
Confidence 444455544 4459999988431 2234566777777777778899999974
No 124
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=56.08 E-value=21 Score=21.55 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=25.0
Q ss_pred CeEEEEEEecCCCccccccccCCCCCcceEEEcCCCC
Q 039430 258 RVRHLSFAVANASRNDFSSLLSDLGRVRTIFFSTDDE 294 (308)
Q Consensus 258 ~~r~lsi~~~~~~~~~~~~~~~~~~~lRtL~~~~~~~ 294 (308)
+.++|.+..+.... ++.....+++|++|.+.+...
T Consensus 2 ~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCC
Confidence 46788888887654 553478999999999976554
No 125
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=54.30 E-value=54 Score=30.57 Aligned_cols=76 Identities=18% Similarity=0.103 Sum_probs=46.6
Q ss_pred EEEEEecCCCCCh-HHHH-HHHHhhcC-CCCCcEEEEEecc---------hHHHhhhccCCCCceeecCCCCchhhHhHh
Q 039430 53 YLLVMDYVWNEDL-EAWR-KFKSLLLG-GANGSKILVTTRS---------RKVASIMGTKGGSTGYNLQGLPFEDCLSLF 120 (308)
Q Consensus 53 ~LlVLDdv~~~~~-~~~~-~l~~~l~~-~~~gs~IlvTTR~---------~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf 120 (308)
=++++||++.-.. +.|+ .+...+.. ...|..||+|++. +++...+... -++.+.+++.+....++
T Consensus 177 dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~G---l~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 177 DLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWG---LVVEIEPPDDETRLAIL 253 (408)
T ss_pred CeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhce---eEEeeCCCCHHHHHHHH
Confidence 3899999976211 1232 23333321 1234479999954 2333333333 78999999999999999
Q ss_pred hhhhcccCCCC
Q 039430 121 MKCACKEERDK 131 (308)
Q Consensus 121 ~~~a~~~~~~~ 131 (308)
.+.+...+...
T Consensus 254 ~kka~~~~~~i 264 (408)
T COG0593 254 RKKAEDRGIEI 264 (408)
T ss_pred HHHHHhcCCCC
Confidence 99775554433
No 126
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=53.80 E-value=35 Score=27.75 Aligned_cols=51 Identities=10% Similarity=0.101 Sum_probs=33.2
Q ss_pred HHHHHHHcCCce-EEEEEecCCCC---ChHHHHHHHHhhcCCCCCcEEEEEecch
Q 039430 41 QKVLRDSFNGKR-YLLVMDYVWNE---DLEAWRKFKSLLLGGANGSKILVTTRSR 91 (308)
Q Consensus 41 ~~~l~~~L~~kr-~LlVLDdv~~~---~~~~~~~l~~~l~~~~~gs~IlvTTR~~ 91 (308)
.+..++.+...+ =|+|||.+-.. ..-+.+.+...+.....+.-||+|-|+.
T Consensus 86 ~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 86 WQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 344455555544 49999988431 1123456677776666777899999985
No 127
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=52.06 E-value=59 Score=27.45 Aligned_cols=104 Identities=11% Similarity=0.052 Sum_probs=52.6
Q ss_pred CceEEEEEecCCC---C-C--hHHHHHHHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCch--hhHhHhh
Q 039430 50 GKRYLLVMDYVWN---E-D--LEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFE--DCLSLFM 121 (308)
Q Consensus 50 ~kr~LlVLDdv~~---~-~--~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~--ea~~Lf~ 121 (308)
..+-|++||..-. . + ...|..+ ..+.. ..|+.+|+||-..++...+.......-.++.....+ +... |.
T Consensus 108 ~~~sLvLLDEp~~gT~~lD~~~~~~~il-~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~~~~~~~~-~~ 184 (222)
T cd03285 108 TENSLIIIDELGRGTSTYDGFGLAWAIA-EYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTDDASRTLT-ML 184 (222)
T ss_pred CCCeEEEEecCcCCCChHHHHHHHHHHH-HHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEeCCCCcEe-EE
Confidence 5678999999832 1 1 1112222 33332 347789999998777765432210011222211111 2111 22
Q ss_pred hhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhhhcC
Q 039430 122 KCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYD 162 (308)
Q Consensus 122 ~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L~~ 162 (308)
..+..+ .. -...|-.+++++ |+|-.+..-|..+..
T Consensus 185 Y~l~~G-~~----~~s~a~~~a~~~-g~p~~vi~~A~~~~~ 219 (222)
T cd03285 185 YKVEKG-AC----DQSFGIHVAELA-NFPKEVIEMAKQKAL 219 (222)
T ss_pred EEEeeC-CC----CCcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 222111 11 123577777776 999988888776653
No 128
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=51.89 E-value=98 Score=25.08 Aligned_cols=107 Identities=12% Similarity=0.071 Sum_probs=53.8
Q ss_pred HHHHcCC--ceEEEEEecCCCCC-hHHHH----HHHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchhh
Q 039430 44 LRDSFNG--KRYLLVMDYVWNED-LEAWR----KFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDC 116 (308)
Q Consensus 44 l~~~L~~--kr~LlVLDdv~~~~-~~~~~----~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea 116 (308)
+...+.. ++-|+++|..-..- ...-. .+...+.. ..|+.+|++|...++...+.......-+++....+.+.
T Consensus 69 l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~~~~~v~~~~~~~~~~~~~ 147 (185)
T smart00534 69 TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLADEHPGVRNLHMSADEETEN 147 (185)
T ss_pred HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhhcCccceEEEEEEEEecCc
Confidence 4444444 78899999886531 11111 22222322 23678999999988877654321112233332222211
Q ss_pred HhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhh
Q 039430 117 LSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGS 158 (308)
Q Consensus 117 ~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~ 158 (308)
-.|...+..+ . .-...|..+++++ |+|-.+..-|.
T Consensus 148 -~~~~Y~l~~G-~----~~~s~a~~~a~~~-g~~~~i~~~a~ 182 (185)
T smart00534 148 -LTFLYKLTPG-V----AGKSYGIEVAKLA-GLPKEVIERAK 182 (185)
T ss_pred -eeEEEEEeEC-C----CCCcHHHHHHHHh-CCCHHHHHHHH
Confidence 1121122111 1 1123677787777 68877766554
No 129
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=50.66 E-value=28 Score=29.37 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=31.3
Q ss_pred CceEEEEEecCCCCC-hHH----HHHHHHhhcCCCCCcEEEEEecchHHHhhhccC
Q 039430 50 GKRYLLVMDYVWNED-LEA----WRKFKSLLLGGANGSKILVTTRSRKVASIMGTK 100 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~-~~~----~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~ 100 (308)
.++-|++||..-... ..+ -..+...+.. ..|+.+|++|-+.+++......
T Consensus 108 ~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~-~~~~~~i~~TH~~el~~~~~~~ 162 (218)
T cd03286 108 TPDSLVILDELGRGTSTHDGYAIAHAVLEYLVK-KVKCLTLFSTHYHSLCDEFHEH 162 (218)
T ss_pred CCCeEEEEecccCCCCchHHHHHHHHHHHHHHH-hcCCcEEEEeccHHHHHHhhcC
Confidence 578899999984321 011 1122333432 2488999999999998876543
No 130
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=50.50 E-value=44 Score=34.55 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=60.0
Q ss_pred CceEEEEEecCCCCC--hH----HHHHHHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhh
Q 039430 50 GKRYLLVMDYVWNED--LE----AWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKC 123 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~--~~----~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 123 (308)
..+-|+|+|.+.... .+ .|. +...+.. ..|+++|++|-..++............+++.....++...++.+.
T Consensus 685 t~~sLvllDE~GrGTs~~dg~aia~a-ile~l~~-~~~~~~l~aTH~~el~~l~~~~~~v~n~~m~~~~~~~~l~flYkl 762 (854)
T PRK05399 685 TERSLVLLDEIGRGTSTYDGLSIAWA-VAEYLHD-KIGAKTLFATHYHELTELEEKLPGVKNVHVAVKEHGGDIVFLHKV 762 (854)
T ss_pred CCCcEEEEecCCCCCCcchhHHHHHH-HHHHHHh-cCCceEEEEechHHHHHHhhhcCCeEEEEEEEEEeCCeEEEEEEe
Confidence 478999999984321 11 222 2233332 236899999999888776543322344555544333333333333
Q ss_pred hcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhhhcC
Q 039430 124 ACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYD 162 (308)
Q Consensus 124 a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L~~ 162 (308)
.-|.. -...|-.+++.+ |+|-.+..-|..+..
T Consensus 763 ~~G~~------~~SyGi~VA~la-GlP~~VI~rA~~i~~ 794 (854)
T PRK05399 763 VPGAA------DKSYGIHVAKLA-GLPASVIKRAREILA 794 (854)
T ss_pred CcCCC------CCcHHHHHHHHc-CCCHHHHHHHHHHHH
Confidence 32221 124677777765 899999888876653
No 131
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=49.05 E-value=60 Score=33.47 Aligned_cols=104 Identities=10% Similarity=0.057 Sum_probs=60.6
Q ss_pred CceEEEEEecCCCCC-hHH----HHHHHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhh
Q 039430 50 GKRYLLVMDYVWNED-LEA----WRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCA 124 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~-~~~----~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 124 (308)
+++-|+++|.+.... ..+ ...+...+.. ..|+++++||-..++............+++.....++...+..+..
T Consensus 670 t~~sLvllDE~GrGT~~~dg~aia~ai~e~l~~-~~~~~~~~~TH~~eL~~l~~~~~~v~n~~~~~~~~~~~l~flYkl~ 748 (840)
T TIGR01070 670 TENSLVLFDEIGRGTSTYDGLALAWAIAEYLHE-HIRAKTLFATHYFELTALEESLPGLKNVHVAALEHNGTIVFLHQVL 748 (840)
T ss_pred CCCEEEEEccCCCCCChhHHHHHHHHHHHHHHh-cCCCEEEEEcCchHHHHHhhhCCCeEEEEEEEEEECCcEEEEEEEC
Confidence 578999999996431 011 1223333433 2678999999999887765433222345555443333333333332
Q ss_pred cccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhhhc
Q 039430 125 CKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLY 161 (308)
Q Consensus 125 ~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L~ 161 (308)
-|.. -...|-++++.+ |+|-.+..-|..+.
T Consensus 749 ~G~~------~~Sygi~VA~la-GlP~~VI~rA~~il 778 (840)
T TIGR01070 749 PGPA------SKSYGLAVAALA-GLPKEVIARARQIL 778 (840)
T ss_pred CCCC------CCcHHHHHHHHc-CCCHHHHHHHHHHH
Confidence 2211 124677888776 89999988777664
No 132
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=47.68 E-value=1.7e+02 Score=24.53 Aligned_cols=106 Identities=10% Similarity=0.188 Sum_probs=65.4
Q ss_pred CHHHHHHHHHHHhcCCC-----CCCCCHHHHHHHHHHHc---CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEE
Q 039430 15 GERQIMTKIINSITGEN-----QSNLDPDRLQKVLRDSF---NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILV 86 (308)
Q Consensus 15 ~~~~ll~~il~~l~~~~-----~~~~~~~~~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv 86 (308)
|+.....++...++... .+....+++.+.+.+.- ...|+ |+|++..-.......+...+..-..++.+|+
T Consensus 12 d~e~~~~~l~~~~~~~~~~~f~~~~i~Vd~iReii~~~~~~~~~~k~--iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL 89 (206)
T PRK08485 12 DFEESKEELINEFGKKNLRFFIKEEFKIEDAKEVIAEAYIAESEEKI--IVIAAPSYGIEAQNALLKILEEPPKNICFII 89 (206)
T ss_pred CHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHhhCCCCcEE--EEEchHhhCHHHHHHHHHHhcCCCCCeEEEE
Confidence 56666777777766442 23456666665554432 23454 5678877666778888888876666666666
Q ss_pred Eecc-hHHHhhhccCCC-----------CceeecCCCCchhhHhHhhh
Q 039430 87 TTRS-RKVASIMGTKGG-----------STGYNLQGLPFEDCLSLFMK 122 (308)
Q Consensus 87 TTR~-~~va~~~~~~~~-----------~~~~~l~~L~~~ea~~Lf~~ 122 (308)
.|.+ ..+......... ...+.+++|+.++..+.+.+
T Consensus 90 ~t~~~~~llpTI~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 90 VAKSKNLLLPTIRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred EeCChHhCchHHHhhheeccccccccccccccccCCCCHHHHHHHHHH
Confidence 5555 334433322110 02377999999999999987
No 133
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=47.55 E-value=26 Score=29.29 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=24.4
Q ss_pred HcCCc---eEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchHH
Q 039430 47 SFNGK---RYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKV 93 (308)
Q Consensus 47 ~L~~k---r~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v 93 (308)
.++|+ ..+||+|.+.+... .++...+...+.|||||++-=..++
T Consensus 112 ~iRGrt~~~~~iIvDEaQN~t~---~~~k~ilTR~g~~skii~~GD~~Q~ 158 (205)
T PF02562_consen 112 FIRGRTFDNAFIIVDEAQNLTP---EELKMILTRIGEGSKIIITGDPSQI 158 (205)
T ss_dssp GGTT--B-SEEEEE-SGGG--H---HHHHHHHTTB-TT-EEEEEE-----
T ss_pred hhcCccccceEEEEecccCCCH---HHHHHHHcccCCCcEEEEecCceee
Confidence 45564 46999999988655 4455556666889999998754433
No 134
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=44.83 E-value=77 Score=23.38 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=27.6
Q ss_pred HHHHHHHHcCCc-eEEEEEecCCCCChHH-----------HHHHHHhhcCCC---CCcEEEEEecc
Q 039430 40 LQKVLRDSFNGK-RYLLVMDYVWNEDLEA-----------WRKFKSLLLGGA---NGSKILVTTRS 90 (308)
Q Consensus 40 ~~~~l~~~L~~k-r~LlVLDdv~~~~~~~-----------~~~l~~~l~~~~---~gs~IlvTTR~ 90 (308)
+...+.+.-... +.+|++||+..-.... ...+...+.... .+..||.||..
T Consensus 46 i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 46 IRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp HHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred cccccccccccccceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 333344432333 7999999997643222 344455554432 23566666665
No 135
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=44.11 E-value=2.5e+02 Score=26.83 Aligned_cols=112 Identities=7% Similarity=0.028 Sum_probs=57.6
Q ss_pred HHHHHHHHcCCceEEEEEecCCCC----------ChHHHHHH----HHhhc--CCCCCcEEEEEecchHHHhh-h-ccCC
Q 039430 40 LQKVLRDSFNGKRYLLVMDYVWNE----------DLEAWRKF----KSLLL--GGANGSKILVTTRSRKVASI-M-GTKG 101 (308)
Q Consensus 40 ~~~~l~~~L~~kr~LlVLDdv~~~----------~~~~~~~l----~~~l~--~~~~gs~IlvTTR~~~va~~-~-~~~~ 101 (308)
+...+.........+|++|++..- ....+... ...+. ....+-.||.||...+.... + ....
T Consensus 136 l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gR 215 (495)
T TIGR01241 136 VRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGR 215 (495)
T ss_pred HHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCc
Confidence 333444444556789999999541 01122222 22221 12234456666655432221 1 1111
Q ss_pred CCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCC-ChHHHHH
Q 039430 102 GSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGG-ILLAVKT 155 (308)
Q Consensus 102 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~g-lPLai~~ 155 (308)
-+..+.+...+.++-.++|...+........ .....+++.+.| .+-.|..
T Consensus 216 fd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~----~~l~~la~~t~G~sgadl~~ 266 (495)
T TIGR01241 216 FDRQVVVDLPDIKGREEILKVHAKNKKLAPD----VDLKAVARRTPGFSGADLAN 266 (495)
T ss_pred ceEEEEcCCCCHHHHHHHHHHHHhcCCCCcc----hhHHHHHHhCCCCCHHHHHH
Confidence 1267889999998889998877643321111 123477777777 3344443
No 136
>PRK08116 hypothetical protein; Validated
Probab=43.55 E-value=19 Score=31.48 Aligned_cols=38 Identities=24% Similarity=0.338 Sum_probs=22.6
Q ss_pred EEEEecCCCCChHHHHH--HHHhhcC-CCCCcEEEEEecch
Q 039430 54 LLVMDYVWNEDLEAWRK--FKSLLLG-GANGSKILVTTRSR 91 (308)
Q Consensus 54 LlVLDdv~~~~~~~~~~--l~~~l~~-~~~gs~IlvTTR~~ 91 (308)
||||||+......+|.. +...+.. -.+|..+|+||...
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 89999996443344543 4433322 13456799998643
No 137
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=43.45 E-value=11 Score=30.63 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=19.3
Q ss_pred EEEEEecCCCCChHHHHH--HHHhhcC-CCCCcEEEEEecch
Q 039430 53 YLLVMDYVWNEDLEAWRK--FKSLLLG-GANGSKILVTTRSR 91 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~~~--l~~~l~~-~~~gs~IlvTTR~~ 91 (308)
=||||||+-......|.. +...+.. -.++ .+|+||...
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred cEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 388899998765555543 2222221 1223 588888753
No 138
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=43.20 E-value=1.9e+02 Score=25.81 Aligned_cols=121 Identities=12% Similarity=0.110 Sum_probs=67.7
Q ss_pred eE-EEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCC
Q 039430 52 RY-LLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEER 129 (308)
Q Consensus 52 r~-LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 129 (308)
.| ++|+-.+.+-..+.-..++.....-.+.+|+|+.--+ ..+....... --.+++...+++|....+++.+-..+.
T Consensus 127 ~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrSR--Cl~iRvpaps~eeI~~vl~~v~~kE~l 204 (351)
T KOG2035|consen 127 PFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRSR--CLFIRVPAPSDEEITSVLSKVLKKEGL 204 (351)
T ss_pred ceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhhh--eeEEeCCCCCHHHHHHHHHHHHHHhcc
Confidence 44 4455555443333334455555554566777764332 1122222111 146889999999999999988855443
Q ss_pred CCCchHHHHHHHHHHHcCCC-hHHHHHHhhhhcC-C---------CCHHHHHHHHhhhcc
Q 039430 130 DKHPNLIKIAKEIVKKCGGI-LLAVKTLGSLLYD-S---------TDEHFWEYVRDNEIW 178 (308)
Q Consensus 130 ~~~~~l~~~~~~I~~~c~gl-PLai~~ig~~L~~-~---------~~~~~w~~~~~~~~~ 178 (308)
..+ .+++++|+++++|. --||-++-. ++- + ....+|+........
T Consensus 205 ~lp---~~~l~rIa~kS~~nLRrAllmlE~-~~~~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 205 QLP---KELLKRIAEKSNRNLRRALLMLEA-VRVNNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred cCc---HHHHHHHHHHhcccHHHHHHHHHH-HHhccccccccCCCCCCccHHHHHHHHHH
Confidence 322 57899999999884 444443322 221 1 124578876554433
No 139
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.06 E-value=52 Score=30.21 Aligned_cols=45 Identities=29% Similarity=0.310 Sum_probs=30.1
Q ss_pred CCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHh
Q 039430 49 NGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVAS 95 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~ 95 (308)
.++.-+|+|||+-.+ +......+...+... |..|++||.+.+...
T Consensus 300 ~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 300 GGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred cCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 456789999999764 223345566666543 567999998765433
No 140
>PRK00304 hypothetical protein; Provisional
Probab=43.02 E-value=83 Score=21.66 Aligned_cols=30 Identities=7% Similarity=0.058 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHHcCCceEEEEEecCCC
Q 039430 33 SNLDPDRLQKVLRDSFNGKRYLLVMDYVWN 62 (308)
Q Consensus 33 ~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~ 62 (308)
...+.++.+..+++.|+..+.+||+|....
T Consensus 30 ~E~sL~~kv~qv~~qL~~G~~vIvfse~~e 59 (75)
T PRK00304 30 DETPLETRVLRVRQALTKGQAVILFDPESQ 59 (75)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 455778888889999999999999997743
No 141
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=42.20 E-value=1.8e+02 Score=25.72 Aligned_cols=70 Identities=11% Similarity=0.153 Sum_probs=47.4
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCCCCchhhHhHhh
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQGLPFEDCLSLFM 121 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~ 121 (308)
.+++-++|+||+.......+..+...+..-..++.+|++|.+ ..+...+... ...+.+.+ +.++..+.+.
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SR--cq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSR--TQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHc--ceeeeCCC-cHHHHHHHHH
Confidence 356779999999888878889999999876666767776655 4555554332 14566655 5555555554
No 142
>PRK08181 transposase; Validated
Probab=42.18 E-value=1e+02 Score=27.00 Aligned_cols=38 Identities=18% Similarity=0.175 Sum_probs=21.4
Q ss_pred EEEEEecCCCCChHHHH--HHHHhhcCC-CCCcEEEEEecch
Q 039430 53 YLLVMDYVWNEDLEAWR--KFKSLLLGG-ANGSKILVTTRSR 91 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~~--~l~~~l~~~-~~gs~IlvTTR~~ 91 (308)
=||||||+.......|. .+...+..- ..+ .+||||...
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~-s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELISARYERR-SILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHhCC-CEEEEcCCC
Confidence 39999999654332332 344444321 223 588888754
No 143
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=41.62 E-value=2.5e+02 Score=24.90 Aligned_cols=102 Identities=11% Similarity=0.015 Sum_probs=53.5
Q ss_pred CCceEEEEEecCCC---CChHHHHHHHHhhcCCCCCcEEEEEecch-----HHHhhhccCCCCceeecCCC---CchhhH
Q 039430 49 NGKRYLLVMDYVWN---EDLEAWRKFKSLLLGGANGSKILVTTRSR-----KVASIMGTKGGSTGYNLQGL---PFEDCL 117 (308)
Q Consensus 49 ~~kr~LlVLDdv~~---~~~~~~~~l~~~l~~~~~gs~IlvTTR~~-----~va~~~~~~~~~~~~~l~~L---~~~ea~ 117 (308)
-+.+-++|++|... .....++.+...+......+.+|+++... ......... ..+.....+ +.++-.
T Consensus 59 f~~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~--~~~~~~~~~~~~~~~~l~ 136 (326)
T PRK07452 59 GSGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKL--AEEKEFSLIPPWDTEGLK 136 (326)
T ss_pred CCCceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHc--eeEEEecCCCcccHHHHH
Confidence 34566777777621 12245667888877656667777754321 122222111 123333333 334444
Q ss_pred hHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 039430 118 SLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKT 155 (308)
Q Consensus 118 ~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ 155 (308)
.+..+.+-..+.... .+.+..+++.+||.+.++..
T Consensus 137 ~~i~~~~~~~g~~i~---~~a~~~L~~~~g~dl~~l~~ 171 (326)
T PRK07452 137 QLVERTAQELGVKLT---PEAAELLAEAVGNDSRRLYN 171 (326)
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHHhCccHHHHHH
Confidence 555555533333222 35677888888887776654
No 144
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=41.47 E-value=2.6e+02 Score=25.04 Aligned_cols=145 Identities=15% Similarity=0.096 Sum_probs=79.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCCCC-----CCC-------HHHHHHHHHHH-cCCceEEEEEecCCCCChHHHHHH
Q 039430 5 KIWICVSVDFGERQIMTKIINSITGENQS-----NLD-------PDRLQKVLRDS-FNGKRYLLVMDYVWNEDLEAWRKF 71 (308)
Q Consensus 5 ~~WV~vs~~~~~~~ll~~il~~l~~~~~~-----~~~-------~~~~~~~l~~~-L~~kr~LlVLDdv~~~~~~~~~~l 71 (308)
+.-+...+.+-+.+..+.+.+.+...... ..+ .+++...+... |-+.+-+||+.+... ..++.+
T Consensus 22 ~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~~~~~~~~~~~~t~slF~~~rlViv~~~~~---~~~~~L 98 (343)
T PRK06585 22 AVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLDADPARLEDEANAISLFGGRRLIWVRAGSK---NLAAAL 98 (343)
T ss_pred EEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhhcCHHHHHHHHhCCCCCCCceEEEEECCch---hHHHHH
Confidence 34444556666677777777776432211 111 23333333332 334555777776532 346677
Q ss_pred HHhhcCCCCCcEEEEEecc----hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcC
Q 039430 72 KSLLLGGANGSKILVTTRS----RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCG 147 (308)
Q Consensus 72 ~~~l~~~~~gs~IlvTTR~----~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~ 147 (308)
...+......+.+|++.-. ....+.+........+...+++..+...+..+.+-..+.... .+.+..+++.+|
T Consensus 99 ~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~~~~~g~~i~---~~a~~~L~~~~g 175 (343)
T PRK06585 99 KALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDELAEAGLRIT---PDARALLVALLG 175 (343)
T ss_pred HHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHhC
Confidence 7777665666777776322 112222221111234555667777777777777644443322 356778888888
Q ss_pred CChHHHHH
Q 039430 148 GILLAVKT 155 (308)
Q Consensus 148 glPLai~~ 155 (308)
|...++..
T Consensus 176 ~dl~~l~~ 183 (343)
T PRK06585 176 GDRLASRN 183 (343)
T ss_pred CCHHHHHH
Confidence 87766654
No 145
>CHL00176 ftsH cell division protein; Validated
Probab=40.93 E-value=2.7e+02 Score=27.86 Aligned_cols=105 Identities=10% Similarity=0.106 Sum_probs=58.6
Q ss_pred HHHHHHHHcCCceEEEEEecCCCC----------ChHHHHH----HHHhhcC--CCCCcEEEEEecchHHHhh-h-ccCC
Q 039430 40 LQKVLRDSFNGKRYLLVMDYVWNE----------DLEAWRK----FKSLLLG--GANGSKILVTTRSRKVASI-M-GTKG 101 (308)
Q Consensus 40 ~~~~l~~~L~~kr~LlVLDdv~~~----------~~~~~~~----l~~~l~~--~~~gs~IlvTTR~~~va~~-~-~~~~ 101 (308)
+...+.+......++|++|++..- ....+.. +...+.. ...|-.||.||...+.... + ....
T Consensus 264 vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGR 343 (638)
T CHL00176 264 VRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGR 343 (638)
T ss_pred HHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhcccc
Confidence 334445555677899999999532 0112222 2222221 2345567777766544332 1 1111
Q ss_pred CCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCC
Q 039430 102 GSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGG 148 (308)
Q Consensus 102 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~g 148 (308)
-+..+.++..+.++-.++++.++..... ........+++.+.|
T Consensus 344 Fd~~I~v~lPd~~~R~~IL~~~l~~~~~----~~d~~l~~lA~~t~G 386 (638)
T CHL00176 344 FDRQITVSLPDREGRLDILKVHARNKKL----SPDVSLELIARRTPG 386 (638)
T ss_pred CceEEEECCCCHHHHHHHHHHHHhhccc----chhHHHHHHHhcCCC
Confidence 1267889999999999999887743211 112334667777777
No 146
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=40.48 E-value=1.3e+02 Score=27.94 Aligned_cols=100 Identities=11% Similarity=0.047 Sum_probs=53.5
Q ss_pred HHcCCceEEEEEecCCCC-----------ChH---HHHHHHHhhcC--CCCCcEEEEEecchHHHhhh--ccCCCCceee
Q 039430 46 DSFNGKRYLLVMDYVWNE-----------DLE---AWRKFKSLLLG--GANGSKILVTTRSRKVASIM--GTKGGSTGYN 107 (308)
Q Consensus 46 ~~L~~kr~LlVLDdv~~~-----------~~~---~~~~l~~~l~~--~~~gs~IlvTTR~~~va~~~--~~~~~~~~~~ 107 (308)
........+|++|++..- +.. .+..+...+.. ...+..||+||...+..... ....-+..+.
T Consensus 233 ~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~ 312 (398)
T PTZ00454 233 LARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIE 312 (398)
T ss_pred HHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEE
Confidence 334557899999997531 001 11222222221 23456788888765544321 1111125688
Q ss_pred cCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCC
Q 039430 108 LQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGI 149 (308)
Q Consensus 108 l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~gl 149 (308)
+...+.++...+|+............. ..++++...|.
T Consensus 313 ~~~P~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~ 350 (398)
T PTZ00454 313 FPLPDRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKI 350 (398)
T ss_pred eCCcCHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCC
Confidence 999999988888886654322222222 34555666554
No 147
>PRK14700 recombination factor protein RarA; Provisional
Probab=39.62 E-value=57 Score=29.00 Aligned_cols=70 Identities=16% Similarity=0.070 Sum_probs=42.2
Q ss_pred CCCcEEEE--EecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhccc---CCCCCchHHHHHHHHHHHcCC
Q 039430 79 ANGSKILV--TTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKE---ERDKHPNLIKIAKEIVKKCGG 148 (308)
Q Consensus 79 ~~gs~Ilv--TTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~---~~~~~~~l~~~~~~I~~~c~g 148 (308)
.+|.-++| ||.++...-.-.-.....++.+++|+.++...++.+..-.. ......-..+....|++.|+|
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~G 79 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEG 79 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCC
Confidence 45665554 66665433221111123789999999999999998876421 100111234667788888888
No 148
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=39.11 E-value=1.1e+02 Score=25.29 Aligned_cols=63 Identities=17% Similarity=0.134 Sum_probs=38.6
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcC-CCCCcEEEEEecchHHHhhhccCCCCceeecCCCC
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLG-GANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLP 112 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~ 112 (308)
+...+..+.-+|+||..-.. +......+...+.. ...|..||++|.+...... . +++.++...
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~---~~~~~~~~~ 202 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---A---RELDLGPFA 202 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---C---cEEeecCcc
Confidence 45566667789999977542 22334445554442 2346678999888766544 3 677776643
No 149
>PRK10536 hypothetical protein; Provisional
Probab=38.03 E-value=56 Score=28.47 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=29.6
Q ss_pred HcCCceE---EEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecch
Q 039430 47 SFNGKRY---LLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSR 91 (308)
Q Consensus 47 ~L~~kr~---LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~ 91 (308)
+++++.+ +||+|.+.+.+. ..+...+...+.||++|+|-=..
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~---~~~k~~ltR~g~~sk~v~~GD~~ 213 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTA---AQMKMFLTRLGENVTVIVNGDIT 213 (262)
T ss_pred HhcCCcccCCEEEEechhcCCH---HHHHHHHhhcCCCCEEEEeCChh
Confidence 5666544 999999988765 44455555557899999987543
No 150
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=37.47 E-value=77 Score=26.22 Aligned_cols=50 Identities=16% Similarity=0.337 Sum_probs=34.1
Q ss_pred HHHHHHcCCceE-EEEEecCCCC---ChHHHHHHHHhhcCCCCCcEEEEEecch
Q 039430 42 KVLRDSFNGKRY-LLVMDYVWNE---DLEAWRKFKSLLLGGANGSKILVTTRSR 91 (308)
Q Consensus 42 ~~l~~~L~~kr~-LlVLDdv~~~---~~~~~~~l~~~l~~~~~gs~IlvTTR~~ 91 (308)
+...+.+.+.+| |+|||.+.-. ..-.++.+...+.......-||+|-|..
T Consensus 112 ~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~~kP~~~~vIiTGr~a 165 (198)
T COG2109 112 EHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLKARPEHTHVIITGRGA 165 (198)
T ss_pred HHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHhcCCCCcEEEEECCCC
Confidence 344455666555 9999988421 1234677788887766778899999973
No 151
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=37.42 E-value=39 Score=31.02 Aligned_cols=37 Identities=24% Similarity=0.377 Sum_probs=29.2
Q ss_pred eEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecch
Q 039430 52 RYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSR 91 (308)
Q Consensus 52 r~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~ 91 (308)
+-+||+|...+-.. .+++..+...+.||||+.|.--.
T Consensus 352 ~~FiIIDEaQNLTp---heikTiltR~G~GsKIVl~gd~a 388 (436)
T COG1875 352 DSFIIIDEAQNLTP---HELKTILTRAGEGSKIVLTGDPA 388 (436)
T ss_pred cceEEEehhhccCH---HHHHHHHHhccCCCEEEEcCCHH
Confidence 45999999987543 66778888889999999987433
No 152
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=36.60 E-value=59 Score=26.46 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=19.7
Q ss_pred cCCceEEEEEecCCCCChHHHHHHHHhhcCCCC
Q 039430 48 FNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGAN 80 (308)
Q Consensus 48 L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~ 80 (308)
+++|++||| |||-+.. .........+...+.
T Consensus 95 v~gk~VLIV-DDIidTG-~Tl~~~~~~Lk~~Ga 125 (181)
T PRK09162 95 LKGRTVLVV-DDILDEG-HTLAAIRDRCLEMGA 125 (181)
T ss_pred CCCCEEEEE-ccccCcH-HHHHHHHHHHHhCCC
Confidence 555565554 9998754 456666777765443
No 153
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=36.47 E-value=98 Score=28.62 Aligned_cols=85 Identities=16% Similarity=0.252 Sum_probs=51.4
Q ss_pred CHHHHHHHHHH--HcCCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEE--EecchHHHhhhccCCCCceeecCCC
Q 039430 36 DPDRLQKVLRD--SFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILV--TTRSRKVASIMGTKGGSTGYNLQGL 111 (308)
Q Consensus 36 ~~~~~~~~l~~--~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv--TTR~~~va~~~~~~~~~~~~~l~~L 111 (308)
+...+.+.-++ .+.++|.+|.+|.|-.-+ -.+-...||.-.+|+-++| ||.+....-...-.....++-|++|
T Consensus 205 dvR~ife~aq~~~~l~krkTilFiDEiHRFN---ksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL 281 (554)
T KOG2028|consen 205 DVRDIFEQAQNEKSLTKRKTILFIDEIHRFN---KSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKL 281 (554)
T ss_pred HHHHHHHHHHHHHhhhcceeEEEeHHhhhhh---hhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccC
Confidence 33344444333 356789999999984321 1122445676677886665 6666543221111111278999999
Q ss_pred CchhhHhHhhhh
Q 039430 112 PFEDCLSLFMKC 123 (308)
Q Consensus 112 ~~~ea~~Lf~~~ 123 (308)
+.++-..++.+-
T Consensus 282 ~~n~v~~iL~ra 293 (554)
T KOG2028|consen 282 PVNAVVTILMRA 293 (554)
T ss_pred CHHHHHHHHHHH
Confidence 999999988873
No 154
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=36.02 E-value=90 Score=25.08 Aligned_cols=48 Identities=10% Similarity=0.319 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHhcCCCCCCC------CHHHHHHHHHHHcCC-ceEEEEEecCCC
Q 039430 15 GERQIMTKIINSITGENQSNL------DPDRLQKVLRDSFNG-KRYLLVMDYVWN 62 (308)
Q Consensus 15 ~~~~ll~~il~~l~~~~~~~~------~~~~~~~~l~~~L~~-kr~LlVLDdv~~ 62 (308)
+++.++.++.+.+........ ..+++.++|++...+ ..|=|||||--.
T Consensus 95 TVEGlL~~i~~~L~~~~~~~~~~e~~~k~~~~l~kL~~~~~g~~pfTlIldDP~G 149 (163)
T TIGR00340 95 NIEGVLERIEEVLDTASDDDEDDEAVKKCEEILKRIREVIEGKFKFTLIIEDPFG 149 (163)
T ss_pred ehHhHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHhCCCCeEEEEECCCC
Confidence 578899999888763321111 134566777777776 579999999843
No 155
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=34.95 E-value=1.6e+02 Score=30.51 Aligned_cols=103 Identities=14% Similarity=0.137 Sum_probs=59.7
Q ss_pred CceEEEEEecCCCCC--h----HHHHHHHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhh
Q 039430 50 GKRYLLVMDYVWNED--L----EAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKC 123 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~--~----~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 123 (308)
.++-|+|||.+-... . -.|.. ...+... .+|+.|..|-..+............-+++......+-. .|...
T Consensus 685 T~~SLvilDEiGRGTsT~DGlaIA~Av-~eyL~~~-~~~~tLFATHy~ELt~l~~~~~~v~N~h~~~~e~~~~i-~Fl~k 761 (843)
T COG0249 685 TERSLVILDEIGRGTSTYDGLAIAWAV-LEYLHEK-IGCRTLFATHYHELTELEEKLPQVKNYHMSAVEEGGDI-TFLYK 761 (843)
T ss_pred CCCcEEEEecccCCCCcchhHHHHHHH-HHHHHhc-cCceEEEeccHHHHHHhhhcccccceeEEEEEEcCCce-EEEEE
Confidence 355699999997532 0 12333 3333332 69999999999888877655322244555533333332 23332
Q ss_pred hcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhhhc
Q 039430 124 ACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLY 161 (308)
Q Consensus 124 a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L~ 161 (308)
+-. .+.-...|..+++.+ |+|-.+...|....
T Consensus 762 v~~-----G~a~~SyGi~VAkla-GlP~~Vi~rA~~il 793 (843)
T COG0249 762 VKP-----GIADKSYGIHVAKLA-GLPEEVIERAREIL 793 (843)
T ss_pred ecc-----CCCCccHHHHHHHHh-CCCHHHHHHHHHHH
Confidence 211 222334677777765 78988888776544
No 156
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=33.99 E-value=2e+02 Score=29.56 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=54.5
Q ss_pred CceEEEEEecCCCC-ChHHHHHH----HHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhh
Q 039430 50 GKRYLLVMDYVWNE-DLEAWRKF----KSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCA 124 (308)
Q Consensus 50 ~kr~LlVLDdv~~~-~~~~~~~l----~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 124 (308)
..+-|++||..-.. +...-..+ ...+. ..|+.+|+||...+++.............+.. + .+......+..
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~-d-~~~l~~~Ykl~ 481 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEF-D-EETLRPTYRLL 481 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEE-e-cCcCcEEEEEe
Confidence 46789999998753 22222223 23332 34789999999988887654431111112211 1 11111111111
Q ss_pred cccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhhhcC
Q 039430 125 CKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYD 162 (308)
Q Consensus 125 ~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L~~ 162 (308)
.|.. -...|-+|++++ |+|-.+.--|..+..
T Consensus 482 ~G~~------g~S~a~~iA~~~-Glp~~ii~~A~~~~~ 512 (782)
T PRK00409 482 IGIP------GKSNAFEIAKRL-GLPENIIEEAKKLIG 512 (782)
T ss_pred eCCC------CCcHHHHHHHHh-CcCHHHHHHHHHHHh
Confidence 1111 123577888877 888888888876654
No 157
>PRK08939 primosomal protein DnaI; Reviewed
Probab=33.63 E-value=37 Score=30.32 Aligned_cols=39 Identities=13% Similarity=0.235 Sum_probs=24.7
Q ss_pred eEEEEEecCCCCChHHHHH--HHHhh-cCC-CCCcEEEEEecc
Q 039430 52 RYLLVMDYVWNEDLEAWRK--FKSLL-LGG-ANGSKILVTTRS 90 (308)
Q Consensus 52 r~LlVLDdv~~~~~~~~~~--l~~~l-~~~-~~gs~IlvTTR~ 90 (308)
-=||||||+..+....|.. +...+ ..- ..+-.+|+||-.
T Consensus 218 ~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 218 APVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred CCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 3489999998776667864 44443 221 234558888863
No 158
>PRK13695 putative NTPase; Provisional
Probab=33.44 E-value=1.9e+02 Score=22.91 Aligned_cols=42 Identities=14% Similarity=0.294 Sum_probs=23.6
Q ss_pred ceEEEEEecCCCCCh--HHHH-HHHHhhcCCCCCcEEEEEecchHHHh
Q 039430 51 KRYLLVMDYVWNEDL--EAWR-KFKSLLLGGANGSKILVTTRSRKVAS 95 (308)
Q Consensus 51 kr~LlVLDdv~~~~~--~~~~-~l~~~l~~~~~gs~IlvTTR~~~va~ 95 (308)
+.-+||+|.++..+. ..+. .+...+ ..|..+|+|+....+..
T Consensus 96 ~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~ 140 (174)
T PRK13695 96 EADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHP 140 (174)
T ss_pred CCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHH
Confidence 455689998765321 1222 233333 23456888888765543
No 159
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=33.16 E-value=1.7e+02 Score=24.53 Aligned_cols=102 Identities=14% Similarity=0.082 Sum_probs=49.2
Q ss_pred CceEEEEEecCCCCC-hHH----HHHHHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhh
Q 039430 50 GKRYLLVMDYVWNED-LEA----WRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCA 124 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~-~~~----~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 124 (308)
.++-|++||...... ..+ ...+...+... .++.+|+||...++............+++..- .+.-++...+-
T Consensus 108 ~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~--~~~~~l~~~yk 184 (216)
T cd03284 108 TERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVK--EKGGGVVFLHK 184 (216)
T ss_pred CCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEE--eeCCeEEEEEE
Confidence 578899999973211 011 12233444322 36779999999877665432211112222211 11111211111
Q ss_pred cccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhh
Q 039430 125 CKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSL 159 (308)
Q Consensus 125 ~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~ 159 (308)
.... ..-...|-.+++++ |+|-.+..-|..
T Consensus 185 l~~G----~~~~s~a~~~a~~~-g~~~~ii~rA~~ 214 (216)
T cd03284 185 IVEG----AADKSYGIEVARLA-GLPEEVIERARE 214 (216)
T ss_pred ECcC----CCCCcHHHHHHHHh-CcCHHHHHHHHH
Confidence 1111 11124577777776 788877766553
No 160
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.19 E-value=2.2e+02 Score=29.17 Aligned_cols=102 Identities=19% Similarity=0.192 Sum_probs=53.7
Q ss_pred CceEEEEEecCCCC-ChHHHHHH----HHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhh
Q 039430 50 GKRYLLVMDYVWNE-DLEAWRKF----KSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCA 124 (308)
Q Consensus 50 ~kr~LlVLDdv~~~-~~~~~~~l----~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 124 (308)
..+-|++||..-.. +...-..+ ...+. ..|+.+|+||-..++........+.....+. ++. +... +....
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~-~~l~-p~Ykl 475 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDE-ETLS-PTYKL 475 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcC-CCCc-eEEEE
Confidence 47899999998763 22222223 22332 3578899999998886554322111111221 111 1111 11111
Q ss_pred cccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhhhcC
Q 039430 125 CKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYD 162 (308)
Q Consensus 125 ~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L~~ 162 (308)
..+ .+ . ...|-+|++++ |+|-.+.--|..+..
T Consensus 476 ~~G-~~--g--~S~a~~iA~~~-Glp~~ii~~A~~~~~ 507 (771)
T TIGR01069 476 LKG-IP--G--ESYAFEIAQRY-GIPHFIIEQAKTFYG 507 (771)
T ss_pred CCC-CC--C--CcHHHHHHHHh-CcCHHHHHHHHHHHH
Confidence 111 11 0 23577888877 888888888876654
No 161
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.00 E-value=2.6e+02 Score=22.13 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=32.5
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
+...+..+.-+|+||+.... +......+...+..-..+..||++|.+.+....
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 45566667779999987642 223334444444332235678888888777654
No 162
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=31.78 E-value=1.4e+02 Score=28.24 Aligned_cols=80 Identities=10% Similarity=0.013 Sum_probs=46.1
Q ss_pred HcCCceEEEEEecCCCC-----------ChH---HHHHHHHhhcC--CCCCcEEEEEecchHHHhhhcc--CCCCceeec
Q 039430 47 SFNGKRYLLVMDYVWNE-----------DLE---AWRKFKSLLLG--GANGSKILVTTRSRKVASIMGT--KGGSTGYNL 108 (308)
Q Consensus 47 ~L~~kr~LlVLDdv~~~-----------~~~---~~~~l~~~l~~--~~~gs~IlvTTR~~~va~~~~~--~~~~~~~~l 108 (308)
...+...+|+||++... +.+ ....+...+.. ...+.+||+||...+.....-. ..-...+.+
T Consensus 272 A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~ 351 (438)
T PTZ00361 272 AEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEF 351 (438)
T ss_pred HHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEe
Confidence 33457789999997431 000 01112222221 2345678888876555443211 111267899
Q ss_pred CCCCchhhHhHhhhhhcc
Q 039430 109 QGLPFEDCLSLFMKCACK 126 (308)
Q Consensus 109 ~~L~~~ea~~Lf~~~a~~ 126 (308)
...+.++..++|..++..
T Consensus 352 ~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 352 PNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999877643
No 163
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=30.81 E-value=2.3e+02 Score=23.71 Aligned_cols=52 Identities=13% Similarity=0.155 Sum_probs=32.4
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVAS 95 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~ 95 (308)
+...|..+.=+|+||+.... +......+...+..-..|..||++|.+.+...
T Consensus 150 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 150 IARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 45556666678999988653 33334445555443225667888888877665
No 164
>CHL00195 ycf46 Ycf46; Provisional
Probab=30.52 E-value=5e+02 Score=24.99 Aligned_cols=144 Identities=12% Similarity=0.072 Sum_probs=79.3
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhcCC---------------C---CCCCCHHHHHHHHHHHcCCceEEEEEecCCCC--
Q 039430 4 LKIWICVSVDFGERQIMTKIINSITGE---------------N---QSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNE-- 63 (308)
Q Consensus 4 ~~~WV~vs~~~~~~~ll~~il~~l~~~---------------~---~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~-- 63 (308)
..+|+.-.+.-.+..+++.++.+.... . ....+..+..+.+.+.-....-++||-|...-
T Consensus 16 p~i~i~t~ee~r~~~~~~~~~~~~~~~~~~~W~~~~G~~~~~~~~~~~~~~p~~al~~i~~~~~~~~~~~vl~d~h~~~~ 95 (489)
T CHL00195 16 PIIYINTIEEDRLEYIIRKSIKLNLNRSIYSWDFVDGYTNNPNDNGFAKRNPLQALEFIEKLTPETPALFLLKDFNRFLN 95 (489)
T ss_pred CEEEEecCCHHHHHHHHHHHHHhcCCCceEEEeccCCCccCCCccCcccccHHHHHHHHHhcCCCCCcEEEEecchhhhc
Confidence 357887777777788888888765311 0 01123344444443333334678888887321
Q ss_pred ChHHHHHHHHhhc-CCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHH
Q 039430 64 DLEAWRKFKSLLL-GGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEI 142 (308)
Q Consensus 64 ~~~~~~~l~~~l~-~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I 142 (308)
+...-..+..... ....+..||+.+-...+....... ..++.++.-+.+|-..++...+...... .-.+..+++
T Consensus 96 ~~~~~r~l~~l~~~~~~~~~~~i~~~~~~~~p~el~~~--~~~~~~~lP~~~ei~~~l~~~~~~~~~~---~~~~~~~~l 170 (489)
T CHL00195 96 DISISRKLRNLSRILKTQPKTIIIIASELNIPKELKDL--ITVLEFPLPTESEIKKELTRLIKSLNIK---IDSELLENL 170 (489)
T ss_pred chHHHHHHHHHHHHHHhCCCEEEEEcCCCCCCHHHHhc--eeEEeecCcCHHHHHHHHHHHHHhcCCC---CCHHHHHHH
Confidence 1111122222111 112344566666665555544432 2456788788888888886665322221 223456889
Q ss_pred HHHcCCChHH
Q 039430 143 VKKCGGILLA 152 (308)
Q Consensus 143 ~~~c~glPLa 152 (308)
++.|.|+++.
T Consensus 171 ~~~~~gls~~ 180 (489)
T CHL00195 171 TRACQGLSLE 180 (489)
T ss_pred HHHhCCCCHH
Confidence 9999999887
No 165
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=30.46 E-value=2e+02 Score=22.95 Aligned_cols=53 Identities=13% Similarity=0.048 Sum_probs=32.9
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVAS 95 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~ 95 (308)
.+.+.+-.+.=+++||..... +....+.+...+..-..|..||++|.+.+...
T Consensus 108 ~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 345666677788899987653 22333444444433234677888888877664
No 166
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=30.05 E-value=2.5e+02 Score=25.21 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=26.1
Q ss_pred EEEEEecCCCCChHHHHHHHHhhcCCC-----------CCcEEEEEecc
Q 039430 53 YLLVMDYVWNEDLEAWRKFKSLLLGGA-----------NGSKILVTTRS 90 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTTR~ 90 (308)
-.|+||+|..-.......|...+..+. ...+||.||..
T Consensus 102 GtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~ 150 (326)
T PRK11608 102 GTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (326)
T ss_pred CeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCch
Confidence 458899998877666777777775432 13578887754
No 167
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.79 E-value=2.4e+02 Score=23.57 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=32.8
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
.+...|..+.=+++||+.-.. +......+...+..-..|..||++|.+......
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 345556666678899987542 333444455555433346678888888766644
No 168
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.14 E-value=2.4e+02 Score=23.56 Aligned_cols=54 Identities=13% Similarity=0.140 Sum_probs=34.0
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
.+...|..+.=+|+||..... +......+...+..-..|..||++|.+......
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 201 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh
Confidence 355667778889999988653 233344455555432236678888888776644
No 169
>PRK06921 hypothetical protein; Provisional
Probab=29.07 E-value=46 Score=29.03 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=20.7
Q ss_pred eEEEEEecCCC-----CChHHHHH--HHHhhcC-CCCCcEEEEEecc
Q 039430 52 RYLLVMDYVWN-----EDLEAWRK--FKSLLLG-GANGSKILVTTRS 90 (308)
Q Consensus 52 r~LlVLDdv~~-----~~~~~~~~--l~~~l~~-~~~gs~IlvTTR~ 90 (308)
-=||||||+.. +....|.. +...+.. -..+..+||||-.
T Consensus 178 ~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 178 VEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 35999999932 22234543 4443322 1234458888853
No 170
>PRK07413 hypothetical protein; Validated
Probab=28.88 E-value=1.5e+02 Score=27.49 Aligned_cols=68 Identities=12% Similarity=0.090 Sum_probs=40.0
Q ss_pred HHHHHcCCce-EEEEEecCCCC---ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCc
Q 039430 43 VLRDSFNGKR-YLLVMDYVWNE---DLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPF 113 (308)
Q Consensus 43 ~l~~~L~~kr-~LlVLDdv~~~---~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~ 113 (308)
..++.+.+.. =|||||.+-.. ..-+-+.+...+.....+.-||+|-|+..-.-.--++ .+-+|.....
T Consensus 116 ~a~~~i~sg~ydlvILDEi~~Al~~gll~~eevl~~L~~rP~~~evVLTGR~ap~~Lie~AD---lVTEm~~iKH 187 (382)
T PRK07413 116 IAKGAIASGLYSVVVLDELNPVLDLGLLPVDEVVNTLKSRPEGLEIIITGRAAPQSLLDIAD---LHSEMRPHRR 187 (382)
T ss_pred HHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCCCCHHHHHhCC---eeEEeceecC
Confidence 4444555544 49999988431 1123456677777667778999999984433222222 4555554433
No 171
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=28.68 E-value=1.8e+02 Score=24.08 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=32.8
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcC-CCCCcEEEEEecchHHHhhhc
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLG-GANGSKILVTTRSRKVASIMG 98 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~IlvTTR~~~va~~~~ 98 (308)
+...|-...-+++||..-.. +......+...+.. ...|..||++|.+...+..+.
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~ 216 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVA 216 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhc
Confidence 44555556679999977542 22334444444433 124667899998877765443
No 172
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=27.98 E-value=1.1e+02 Score=23.36 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=28.6
Q ss_pred ceEEEEEecCCCCChHHHHHHHHhhcCC-CCCcEEEEEecc
Q 039430 51 KRYLLVMDYVWNEDLEAWRKFKSLLLGG-ANGSKILVTTRS 90 (308)
Q Consensus 51 kr~LlVLDdv~~~~~~~~~~l~~~l~~~-~~gs~IlvTTR~ 90 (308)
+.--|+|+|+..-+.+....+...+... ....|+|.||+.
T Consensus 69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 4556789999877666666777777643 567899999874
No 173
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=27.91 E-value=2.2e+02 Score=23.48 Aligned_cols=53 Identities=15% Similarity=0.085 Sum_probs=31.0
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
+.+.+..+.=+|+||+.... +......+...+..-..+..||++|.+......
T Consensus 150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 150 LARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 44556666678999988653 223334444444432334568888877666544
No 174
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=27.74 E-value=2e+02 Score=24.16 Aligned_cols=55 Identities=16% Similarity=0.066 Sum_probs=32.1
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~ 97 (308)
.+...+-.+.=+|+||+.-.. +......+...+..-..+..||++|.+.+.+..+
T Consensus 153 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 208 (242)
T TIGR03411 153 EIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSI 208 (242)
T ss_pred HHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 345566666679999987542 2333344444443222245688888887766543
No 175
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=27.73 E-value=2.5e+02 Score=22.10 Aligned_cols=53 Identities=9% Similarity=0.084 Sum_probs=31.9
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCC-CCCcEEEEEecchHHHhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGG-ANGSKILVTTRSRKVASI 96 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~gs~IlvTTR~~~va~~ 96 (308)
+.+.+-.+.-+|+||+.-.. +......+...+..- ..|..||++|.+......
T Consensus 93 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 44556667788899987542 333344454444322 346678888888765444
No 176
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.57 E-value=2e+02 Score=24.32 Aligned_cols=54 Identities=19% Similarity=0.149 Sum_probs=31.2
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~ 97 (308)
+...|..+.-+|+||+.-.. +......+...+..-..+..||++|.+.+....+
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~ 210 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRI 210 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHh
Confidence 45556666779999987542 2233344444444322345688888877665543
No 177
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=27.27 E-value=4.2e+02 Score=23.04 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCC-----CCCCCCHHHHHH-HHHHHcCCceEEEEEecCCC----CChHHHHHHHHhhcCCCCCcEEEE
Q 039430 17 RQIMTKIINSITGE-----NQSNLDPDRLQK-VLRDSFNGKRYLLVMDYVWN----EDLEAWRKFKSLLLGGANGSKILV 86 (308)
Q Consensus 17 ~~ll~~il~~l~~~-----~~~~~~~~~~~~-~l~~~L~~kr~LlVLDdv~~----~~~~~~~~l~~~l~~~~~gs~Ilv 86 (308)
++...+.+++++.. .....+-.+.++ .+.+.|..+.=||+||.--. ......-.+...+... |+-||+
T Consensus 117 ~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e--g~tIl~ 194 (254)
T COG1121 117 KEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE--GKTVLM 194 (254)
T ss_pred HHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--CCEEEE
Confidence 35566666666532 223333344444 45788999999999995432 2223333444444443 888999
Q ss_pred EecchHHHhh
Q 039430 87 TTRSRKVASI 96 (308)
Q Consensus 87 TTR~~~va~~ 96 (308)
.|-+-.....
T Consensus 195 vtHDL~~v~~ 204 (254)
T COG1121 195 VTHDLGLVMA 204 (254)
T ss_pred EeCCcHHhHh
Confidence 9998666544
No 178
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.17 E-value=2.7e+02 Score=24.02 Aligned_cols=62 Identities=11% Similarity=0.152 Sum_probs=40.1
Q ss_pred HHHHHHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcC-CCCCcEEEEEecchHHHhhhccC
Q 039430 39 RLQKVLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLG-GANGSKILVTTRSRKVASIMGTK 100 (308)
Q Consensus 39 ~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~IlvTTR~~~va~~~~~~ 100 (308)
.-...+.+.+--+.=|.|||..++. +.+..+.+...+.. ...|+-+|+.|-.+.++.....+
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD 213 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPD 213 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCC
Confidence 3445566666667779999988774 33444444333321 23466789999999999888655
No 179
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.58 E-value=2.1e+02 Score=24.20 Aligned_cols=53 Identities=21% Similarity=0.146 Sum_probs=31.5
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
+...|..+.-+++||..-.. +...-..+...+..-..|..||++|.+......
T Consensus 157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 210 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAAR 210 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 44556667789999987542 223334444444332235678888888776544
No 180
>PRK07413 hypothetical protein; Validated
Probab=26.57 E-value=1.2e+02 Score=28.09 Aligned_cols=50 Identities=14% Similarity=0.220 Sum_probs=33.2
Q ss_pred HHHHHHHcCCc-eEEEEEecCCCC---ChHHHHHHHHhhcCCCCCcEEEEEecc
Q 039430 41 QKVLRDSFNGK-RYLLVMDYVWNE---DLEAWRKFKSLLLGGANGSKILVTTRS 90 (308)
Q Consensus 41 ~~~l~~~L~~k-r~LlVLDdv~~~---~~~~~~~l~~~l~~~~~gs~IlvTTR~ 90 (308)
.+..++.+... -=|||||.+-.. ..-..+.+...+.....+.-||+|-|+
T Consensus 294 ~~~a~~~i~~g~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVLTGR~ 347 (382)
T PRK07413 294 WEIARAAIASGLYKTIILDELNPTVDLELLPVEPIVQTLLRKPRDTEVIITGRC 347 (382)
T ss_pred HHHHHHHHhCCCCCEEEEechHHHHHCCCccHHHHHHHHHhCCCCCEEEEeCCC
Confidence 44445555544 349999988431 222345677777766777889999998
No 181
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=26.22 E-value=1.5e+02 Score=24.40 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=26.8
Q ss_pred EEEEEecCCCCChHHH-HHHHHhhcCCC-CCcEEEEEecchHH
Q 039430 53 YLLVMDYVWNEDLEAW-RKFKSLLLGGA-NGSKILVTTRSRKV 93 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~-~~l~~~l~~~~-~gs~IlvTTR~~~v 93 (308)
.++++|.....=.-.| ..+...+.... .+..||+||-+..+
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~i 301 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFI 301 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchh
Confidence 7899999976422334 34555554443 48899999988754
No 182
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.00 E-value=2.4e+02 Score=23.92 Aligned_cols=55 Identities=13% Similarity=0.096 Sum_probs=32.1
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~ 97 (308)
.+.+.|-.+.=+|+||..-.. +......+...+..-..|..||++|.+......+
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~ 212 (251)
T PRK14249 157 CIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARA 212 (251)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhh
Confidence 345566667789999977542 2233333434333222356788888877666554
No 183
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=25.91 E-value=3.2e+02 Score=25.68 Aligned_cols=37 Identities=19% Similarity=0.308 Sum_probs=25.6
Q ss_pred EEEEecCCCCChHHHHHHHHhhcCCC-----------CCcEEEEEecc
Q 039430 54 LLVMDYVWNEDLEAWRKFKSLLLGGA-----------NGSKILVTTRS 90 (308)
Q Consensus 54 LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTTR~ 90 (308)
-|+||+|..-.......|...+..+. ...+||+||..
T Consensus 235 tl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~ 282 (469)
T PRK10923 235 TLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQ 282 (469)
T ss_pred EEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCC
Confidence 57889998876666677777775432 12388888864
No 184
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=25.84 E-value=2.6e+02 Score=23.41 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCceEEEEEecCCC-CCh-HHHHHHHHhhcCCCCCcEEEEEecchHHHhhhcc
Q 039430 38 DRLQKVLRDSFNGKRYLLVMDYVWN-EDL-EAWRKFKSLLLGGANGSKILVTTRSRKVASIMGT 99 (308)
Q Consensus 38 ~~~~~~l~~~L~~kr~LlVLDdv~~-~~~-~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~ 99 (308)
++..-.+.+.+-++.-+|+=|.--- -+. ..|+.+.-.-.-+..|..||++|-+..+...+..
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~ 205 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRH 205 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccC
Confidence 3344457778888888888884311 111 3454433332346789999999999999888754
No 185
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=25.80 E-value=2.6e+02 Score=22.37 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=32.9
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCC-CCCcEEEEEecchHHHhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGG-ANGSKILVTTRSRKVASI 96 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~gs~IlvTTR~~~va~~ 96 (308)
.+...+-.+.-+|+||+.-.. +......+...+..- ..|..||++|.+......
T Consensus 114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 355666677789999987542 223344444444321 236678999988765544
No 186
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=25.18 E-value=2.4e+02 Score=23.29 Aligned_cols=54 Identities=26% Similarity=0.281 Sum_probs=32.9
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~ 97 (308)
+...+..+.-+|+||..-.. +......+...+..-..+..||++|.+.+.+..+
T Consensus 144 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~ 198 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEAL 198 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 45566677789999987553 2233444444444322345688888887766543
No 187
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=25.15 E-value=2.6e+02 Score=23.40 Aligned_cols=53 Identities=9% Similarity=0.125 Sum_probs=33.0
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
+...+-.+.=+|+||+.... +......+...+..-..|..||++|.+.+....
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 202 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKN 202 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHh
Confidence 44555566679999988653 333344455544432346778899888877643
No 188
>PRK10869 recombination and repair protein; Provisional
Probab=25.07 E-value=3.8e+02 Score=26.20 Aligned_cols=45 Identities=18% Similarity=0.066 Sum_probs=29.3
Q ss_pred eEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 52 RYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 52 r~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
.=++|||.+... +......+...+..-..+..||+.|-...++..
T Consensus 453 ~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ 498 (553)
T PRK10869 453 TPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGC 498 (553)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 458899998763 223344455555443345779999999988854
No 189
>PRK06835 DNA replication protein DnaC; Validated
Probab=24.97 E-value=58 Score=29.42 Aligned_cols=38 Identities=18% Similarity=0.285 Sum_probs=22.0
Q ss_pred EEEEEecCCCCChHHHH--HHHHhhcC-CCCCcEEEEEecc
Q 039430 53 YLLVMDYVWNEDLEAWR--KFKSLLLG-GANGSKILVTTRS 90 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~~--~l~~~l~~-~~~gs~IlvTTR~ 90 (308)
=||||||+.......|. .+...+.. -..+..+||||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 38999999665333343 34444332 1234568888864
No 190
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.92 E-value=2.4e+02 Score=24.16 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=32.9
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~ 97 (308)
.+.+.+-.+.=+++||+--.. +......+...+..-..++.||++|.+...+..+
T Consensus 163 ~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~ 218 (257)
T PRK14246 163 TIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARV 218 (257)
T ss_pred HHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHh
Confidence 344556666678899977542 2233444544444322356788899887776543
No 191
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.61 E-value=2.5e+02 Score=23.81 Aligned_cols=53 Identities=15% Similarity=0.169 Sum_probs=30.4
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
+...+..+.=+|+||..-.. +......+...+.....+..||++|.+......
T Consensus 159 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 212 (252)
T PRK14272 159 IARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAAR 212 (252)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 34555556679999987542 223334444444332234668888887766554
No 192
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.58 E-value=2.5e+02 Score=23.85 Aligned_cols=53 Identities=17% Similarity=0.127 Sum_probs=30.2
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
+...|..+.=+|+||..-.. +......+...+..-..|..||++|.+......
T Consensus 157 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~ 210 (250)
T PRK14245 157 IARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAAR 210 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh
Confidence 44556666679999977542 223334444444332234567888877665543
No 193
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.51 E-value=2.8e+02 Score=23.73 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=33.1
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcC--CCCCcEEEEEecchHHHhhhc
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLG--GANGSKILVTTRSRKVASIMG 98 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~gs~IlvTTR~~~va~~~~ 98 (308)
.+...|..+.-+++||..-.. +......+...+.. ...|..||++|.+...+..+.
T Consensus 160 ~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~ 218 (261)
T PRK14258 160 CIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLS 218 (261)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhc
Confidence 344556666778899977542 23344445554443 123567888888777665543
No 194
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=24.32 E-value=2.7e+02 Score=22.79 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=32.2
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
+.+.+-.+.=+++||+.... +....+.+...+.....|..||++|.+...+..
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 44555667778889987642 233344455555433346678888887776543
No 195
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=24.00 E-value=1.7e+02 Score=23.87 Aligned_cols=55 Identities=16% Similarity=0.113 Sum_probs=33.2
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcC-CCCCcEEEEEecchHHHhhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLG-GANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~IlvTTR~~~va~~~ 97 (308)
.+...+..+.=+|+||..-.. +...-+.+...+.. ...|..||++|.+......+
T Consensus 137 ~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~ 193 (200)
T PRK13540 137 ALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKA 193 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcccc
Confidence 345566667778999987543 22223334444432 13467799999887766554
No 196
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.72 E-value=2.5e+02 Score=23.86 Aligned_cols=53 Identities=25% Similarity=0.184 Sum_probs=30.4
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
+...+..+.-+|+||+.-.. +......+...+..-..|..||++|.+......
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~ 213 (251)
T PRK14244 160 IARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKK 213 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHh
Confidence 44555566678899977542 223334444444322235668888887766544
No 197
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.69 E-value=2.6e+02 Score=23.71 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=30.7
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
+...|..+.-+|+||+.-.. +......+...+..-..|..||++|.+......
T Consensus 157 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~ 210 (250)
T PRK14266 157 IARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATR 210 (250)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHh
Confidence 45566667779999987652 223344454444432235567777776655444
No 198
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.65 E-value=2.7e+02 Score=23.51 Aligned_cols=55 Identities=15% Similarity=0.090 Sum_probs=32.5
Q ss_pred HHHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 42 KVLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 42 ~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
-.+.+.+..+.=+++||+.-.. +...-..+...+.....|..||++|.+.+....
T Consensus 151 v~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~ 206 (246)
T PRK14269 151 LCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKR 206 (246)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 3455667777788999987542 222233344444332236678888888775544
No 199
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=23.52 E-value=2.7e+02 Score=24.01 Aligned_cols=54 Identities=19% Similarity=0.137 Sum_probs=31.3
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~ 97 (308)
+...|-.+.-+|+||..-.. +......+...+..-..+..||++|.+.+.+...
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~ 228 (267)
T PRK14235 174 IARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARV 228 (267)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhh
Confidence 45566667779999987542 2233344444443322245688888876665443
No 200
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=23.49 E-value=2.9e+02 Score=23.97 Aligned_cols=46 Identities=17% Similarity=0.097 Sum_probs=29.0
Q ss_pred ceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 51 KRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 51 kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
+.-++++|..-.. +......+...+.....+..||++|.+..+...
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~ 238 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAM 238 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHh
Confidence 7778889987543 223334444444433346679999999887543
No 201
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=23.37 E-value=2.2e+02 Score=23.57 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=33.2
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCC-CCCcEEEEEecchHHHhhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGG-ANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~gs~IlvTTR~~~va~~~ 97 (308)
+...+-...-+++||+.-.. +....+.+...+..- ..|..||++|.+.+.+...
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~ 190 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQL 190 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence 45566667788999987543 233344444444321 2466799999988776543
No 202
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.27 E-value=2.8e+02 Score=24.05 Aligned_cols=63 Identities=19% Similarity=0.126 Sum_probs=37.5
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecC
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQ 109 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~ 109 (308)
.+...|..+.=+|+||..-.. +....+.+...+..-..+..||++|.+......+.. +++.+.
T Consensus 171 ~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d----~i~~l~ 234 (274)
T PRK14265 171 CIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVAD----WTAFFN 234 (274)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC----EEEEEe
Confidence 345556667779999977542 223344444444432235678999988877665433 455554
No 203
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=23.20 E-value=2.2e+02 Score=22.79 Aligned_cols=48 Identities=10% Similarity=0.293 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHhcCC-CC--CC------CCHHHHHHHHHHHcCC-ceEEEEEecCCC
Q 039430 15 GERQIMTKIINSITGE-NQ--SN------LDPDRLQKVLRDSFNG-KRYLLVMDYVWN 62 (308)
Q Consensus 15 ~~~~ll~~il~~l~~~-~~--~~------~~~~~~~~~l~~~L~~-kr~LlVLDdv~~ 62 (308)
++..++.++.+.+... .. .. ...+++.++|.+.+.+ ..|=|||||--.
T Consensus 97 TVEGlL~~i~~~L~~~~~~~~~~~~~e~~~k~~~~~~~L~~~~~g~~~fTliidDP~G 154 (160)
T smart00709 97 TVEGLLSRVREVLSQAIQETRDDSDPETKEKIDEFLEKLKELIEGKEPFTLILDDPAG 154 (160)
T ss_pred ehHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 5788999999888643 11 11 1234455666667766 579999999743
No 204
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=23.17 E-value=2.4e+02 Score=27.57 Aligned_cols=61 Identities=23% Similarity=0.176 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhhcc
Q 039430 38 DRLQKVLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGT 99 (308)
Q Consensus 38 ~~~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~ 99 (308)
....-.|.+.|--+.-||.||+--+- +.+...-|...|....++ .++|++|+++-....++
T Consensus 226 wrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT 287 (614)
T KOG0927|consen 226 WRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCT 287 (614)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhh
Confidence 34556677778888999999987542 222222234445444444 69999999998887766
No 205
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=23.13 E-value=1.7e+02 Score=26.04 Aligned_cols=49 Identities=12% Similarity=0.006 Sum_probs=33.2
Q ss_pred eeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHH
Q 039430 105 GYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAV 153 (308)
Q Consensus 105 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai 153 (308)
++++++++.+|+..++....-..-.......+...+++.-..+|.|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 7899999999999999887754421111233445666666678888543
No 206
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=22.97 E-value=2.8e+02 Score=23.73 Aligned_cols=54 Identities=11% Similarity=0.124 Sum_probs=30.8
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
.+...|....=+|+||+.-.. +...-..+...+..-..|..||++|.+.+....
T Consensus 166 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~ 220 (260)
T PRK10744 166 CIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAAR 220 (260)
T ss_pred HHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 345566667779999987542 222333344444322234567788777666544
No 207
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=22.96 E-value=2.1e+02 Score=24.00 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=32.4
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCC--CCCcEEEEEecchHHHhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGG--ANGSKILVTTRSRKVASI 96 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~--~~gs~IlvTTR~~~va~~ 96 (308)
.+.+.+..+.=+++||..-.. +......+...+..- ..|..||++|.+......
T Consensus 140 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~ 196 (232)
T cd03300 140 AIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALT 196 (232)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 345666667778899987553 333444455444432 236678888887765443
No 208
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=22.82 E-value=2.5e+02 Score=22.43 Aligned_cols=55 Identities=15% Similarity=0.192 Sum_probs=33.1
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCC-CC-CcEEEEEecchHHHhhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGG-AN-GSKILVTTRSRKVASIM 97 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~-gs~IlvTTR~~~va~~~ 97 (308)
.+.+.+....-+++||..-.. +......+...+..- .. |..||++|.+.+....+
T Consensus 107 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~ 164 (180)
T cd03214 107 LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARY 164 (180)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 345666677789999987542 223344454444432 22 66788888887765443
No 209
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.78 E-value=2.8e+02 Score=23.71 Aligned_cols=54 Identities=13% Similarity=0.186 Sum_probs=31.1
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~ 97 (308)
+...|-...-+|+||..-.. +......+...+..-..|..||++|.+...+...
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~ 219 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARI 219 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHh
Confidence 44556666779999977542 2233344444443222356688888877665443
No 210
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=22.41 E-value=2.4e+02 Score=26.50 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=27.7
Q ss_pred eEEEEEecCCCCChHHHHHHHHhhcCCC-----------CCcEEEEEecch
Q 039430 52 RYLLVMDYVWNEDLEAWRKFKSLLLGGA-----------NGSKILVTTRSR 91 (308)
Q Consensus 52 r~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTTR~~ 91 (308)
.-.|+||+|..-.......+...+..+. .+.+||+||...
T Consensus 229 ~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 229 GGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQN 279 (463)
T ss_pred CCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCC
Confidence 3458999998877667777877776432 245788888643
No 211
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=22.38 E-value=2.6e+02 Score=24.16 Aligned_cols=54 Identities=17% Similarity=0.120 Sum_probs=30.8
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
.+...+-.+.-+|+||..-.. +......+...+.....+..||++|.+.+.+..
T Consensus 178 ~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~ 232 (272)
T PRK14236 178 VIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAAR 232 (272)
T ss_pred HHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHh
Confidence 345556667778999977542 222333344444322224568888887766544
No 212
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=22.38 E-value=3.7e+02 Score=25.96 Aligned_cols=39 Identities=13% Similarity=0.161 Sum_probs=25.9
Q ss_pred EEEEEecCCCCChHHHHHHHHhhcCCC-----------CCcEEEEEecch
Q 039430 53 YLLVMDYVWNEDLEAWRKFKSLLLGGA-----------NGSKILVTTRSR 91 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTTR~~ 91 (308)
-.|+||+|..-....-..|...+..+. ...|||.||...
T Consensus 300 GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 300 GSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKN 349 (520)
T ss_pred CEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCC
Confidence 458999998876656667777775431 124788877653
No 213
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=22.34 E-value=2.3e+02 Score=23.43 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=32.5
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCC--CCCcEEEEEecchHHHhhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGG--ANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~--~~gs~IlvTTR~~~va~~~ 97 (308)
+...|-.+.=+|+||..-.. +......+...+..- ..|..||++|.+.+.+...
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 212 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKI 212 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 44556667779999987542 223344454444332 2266788888887766543
No 214
>PRK06526 transposase; Provisional
Probab=22.32 E-value=64 Score=27.91 Aligned_cols=39 Identities=26% Similarity=0.197 Sum_probs=21.3
Q ss_pred eEEEEEecCCCCChHHHH--HHHHhhcC-CCCCcEEEEEecch
Q 039430 52 RYLLVMDYVWNEDLEAWR--KFKSLLLG-GANGSKILVTTRSR 91 (308)
Q Consensus 52 r~LlVLDdv~~~~~~~~~--~l~~~l~~-~~~gs~IlvTTR~~ 91 (308)
.-|||+||+.......+. .+...+.. ..+++ +|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 358999999754322222 24444322 12344 88888754
No 215
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=22.22 E-value=2.8e+02 Score=23.85 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=29.6
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
+.+.+..+.=+|+||..-.. +......+...+....+|..||++|.+......
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~ 227 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAAR 227 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHH
Confidence 45556666668889987542 222333444443322234567888877665443
No 216
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.16 E-value=2.8e+02 Score=23.51 Aligned_cols=53 Identities=23% Similarity=0.177 Sum_probs=30.2
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
+...|..+.-+|+||..-.. +...-..+...+.....+..||++|.+.+....
T Consensus 160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~ 213 (253)
T PRK14267 160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAAR 213 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHh
Confidence 44556667778999977542 223333444444322224568888888766544
No 217
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.81 E-value=3.4e+02 Score=22.47 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=32.9
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
.|...|-.+.=+|+||..... +....+.+...+..-..|..||++|.+......
T Consensus 149 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN 203 (229)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 345666777789999987642 223344444444332236678888888776643
No 218
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.75 E-value=3.1e+02 Score=23.27 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=30.0
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~ 97 (308)
+.+.|-.+.=+|+||..-.. +...-..+...+..-..+..||++|.+.+.+..+
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~ 215 (254)
T PRK14273 161 IARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRI 215 (254)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 34555556669999977542 2222223333333222356688888887766543
No 219
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.45 E-value=3e+02 Score=23.51 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=29.6
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
+...+-.+.-+++||..-.. +......+...+..-..+..||++|.+.+....
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~ 219 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAAR 219 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHH
Confidence 45556666779999987542 223334444444332224557777777655443
No 220
>PRK12377 putative replication protein; Provisional
Probab=21.40 E-value=83 Score=27.15 Aligned_cols=38 Identities=16% Similarity=0.072 Sum_probs=20.9
Q ss_pred EEEEEecCCCCChHHHHH--HHHhhcC-CCCCcEEEEEecc
Q 039430 53 YLLVMDYVWNEDLEAWRK--FKSLLLG-GANGSKILVTTRS 90 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~~~--l~~~l~~-~~~gs~IlvTTR~ 90 (308)
=||||||+.......|.. +...+.. -.++--+||||-.
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 489999995544344543 3333332 1222347888753
No 221
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=21.39 E-value=3e+02 Score=23.30 Aligned_cols=53 Identities=19% Similarity=0.151 Sum_probs=30.3
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
+...|..+.-+|+||..-.. +......+...+..-..|..||++|.+.+....
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~ 213 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAAR 213 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHH
Confidence 45556666779999977542 223333444444332234567888877665544
No 222
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=21.38 E-value=4.9e+02 Score=22.70 Aligned_cols=59 Identities=10% Similarity=0.153 Sum_probs=37.7
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-hHHHhhhccCCCCceeecCC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-RKVASIMGTKGGSTGYNLQG 110 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-~~va~~~~~~~~~~~~~l~~ 110 (308)
++.-++++|++.....+.-..+...+......+.+|++|.. ..+....... ...+.+.+
T Consensus 108 ~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SR--c~~i~f~~ 167 (325)
T COG0470 108 GGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSR--CQRIRFKP 167 (325)
T ss_pred CCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhc--ceeeecCC
Confidence 56789999999876655556677777766777888888873 3333333221 14455555
No 223
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=21.37 E-value=2.7e+02 Score=22.79 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=31.6
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCC-CCCcEEEEEecchHHHhhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGG-ANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~gs~IlvTTR~~~va~~~ 97 (308)
+...|..+.=+|+||..-+. +......+...+..- ..|..||++|.+...+...
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~ 200 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL 200 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 44556666678999977542 223334444444321 2366788888887766553
No 224
>PF07034 ORC3_N: Origin recognition complex (ORC) subunit 3 N-terminus; InterPro: IPR020795 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. ; GO: 0003677 DNA binding, 0006260 DNA replication, 0005664 nuclear origin of replication recognition complex
Probab=21.29 E-value=6.1e+02 Score=22.81 Aligned_cols=72 Identities=10% Similarity=0.147 Sum_probs=44.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCCCCC---------------CCHHHHHHHHH------------HHcC-----Cce
Q 039430 5 KIWICVSVDFGERQIMTKIINSITGENQSN---------------LDPDRLQKVLR------------DSFN-----GKR 52 (308)
Q Consensus 5 ~~WV~vs~~~~~~~ll~~il~~l~~~~~~~---------------~~~~~~~~~l~------------~~L~-----~kr 52 (308)
++=+...+..+++..++.|++++....... .+.+.+..... +... .++
T Consensus 121 vv~L~S~dc~~lk~~lk~iv~ql~~~~~~~~~~~~~~~~~~~~~~yd~~~L~~wy~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (330)
T PF07034_consen 121 VVRLNSKDCSNLKSALKSIVRQLMSDKSDVDEDEEEEEKGQRRLNYDMDILAAWYQNNTKKNDSPSKQKNFSSSRDKSPP 200 (330)
T ss_pred EEEEecccchHHHHHHHHHHHHHHhcccccccccchhhcccCcCCCCHHHHHHHHHhhhccccchhhhcccccccccCCC
Confidence 344444566689999999999986432211 24555554444 1111 248
Q ss_pred EEEEEecCCCCChHHHHHHHHhhc
Q 039430 53 YLLVMDYVWNEDLEAWRKFKSLLL 76 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~~~l~~~l~ 76 (308)
..|||.|...-+..-..++...+.
T Consensus 201 lVIi~eD~EsF~~~VL~dlI~ils 224 (330)
T PF07034_consen 201 LVIIFEDFESFDSQVLQDLILILS 224 (330)
T ss_pred EEEEEcccccCCHHHHHHHHHHHH
Confidence 999999997766556666666654
No 225
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=21.27 E-value=4.5e+02 Score=25.70 Aligned_cols=45 Identities=20% Similarity=0.078 Sum_probs=28.2
Q ss_pred eEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 52 RYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 52 r~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
.=++|||.+... +......+...+..-..|..||++|-...++..
T Consensus 463 ~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ 508 (563)
T TIGR00634 463 VTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAH 508 (563)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHh
Confidence 359999997553 223333444444432346779999999888863
No 226
>PF01337 Barstar: Barstar (barnase inhibitor); InterPro: IPR000468 Barstar is a small single chain protein. Barnase is the extracellular ribonuclease IPR001887 from INTERPRO of Bacillus amyloliquefaciens, and barstar its specific intracellular inhibitor [, ]. Expression of barstar is necessary to counter the lethal effect of expressed active barnase. The structure of the barnase-barstar complex is known [].; PDB: 2CX6_A 1B2U_F 1A19_A 1X1U_F 1B27_E 1X1W_F 1BGS_E 1X1Y_D 1B3S_D 1B2S_D ....
Probab=21.26 E-value=2.9e+02 Score=19.18 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=34.7
Q ss_pred EEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH--cCCceEEEEEecC
Q 039430 8 ICVSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDS--FNGKRYLLVMDYV 60 (308)
Q Consensus 8 V~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~--L~~kr~LlVLDdv 60 (308)
+..+.-.+..++++.+.+.++.+..-..+.+.+-+.|... ..++++.|++.+.
T Consensus 3 idg~~i~~~~~~~~~l~~~l~fP~yfG~NlDAl~D~L~d~~~~~~~~~~i~~~~~ 57 (90)
T PF01337_consen 3 IDGRKIRDKEDFYDALAEALDFPDYFGRNLDALWDCLTDLSWIPEEPIVIIWENA 57 (90)
T ss_dssp EECCC-SSHHHHHHHHHHHTT--TTSSSSHHHHHHHHHCT---S-SSEEEEEETH
T ss_pred EeCCCCCCHHHHHHHHHHHcCCCchhcCCHHHHHHHhcCcccCCCCCEEEEEcCc
Confidence 3455667788899999999976665566777777666655 4456777777665
No 227
>PF06794 UPF0270: Uncharacterised protein family (UPF0270); InterPro: IPR010648 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Y0N_A.
Probab=21.22 E-value=2.7e+02 Score=18.86 Aligned_cols=29 Identities=7% Similarity=0.195 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHHHHcCCceEEEEEecCC
Q 039430 33 SNLDPDRLQKVLRDSFNGKRYLLVMDYVW 61 (308)
Q Consensus 33 ~~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 61 (308)
...+.++....+++.|+..+.+|++|...
T Consensus 31 ~E~sL~~kv~qv~~qL~~G~avI~~se~~ 59 (70)
T PF06794_consen 31 QELSLEEKVEQVKQQLKSGEAVIVFSELH 59 (70)
T ss_dssp ----HHHHHHHHHHHHHTTSEEEEE-TTT
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 45678888899999999999999999764
No 228
>PRK09183 transposase/IS protein; Provisional
Probab=21.07 E-value=67 Score=27.84 Aligned_cols=39 Identities=18% Similarity=0.205 Sum_probs=21.9
Q ss_pred ceEEEEEecCCCCChHHHH--HHHHhhcC-CCCCcEEEEEecc
Q 039430 51 KRYLLVMDYVWNEDLEAWR--KFKSLLLG-GANGSKILVTTRS 90 (308)
Q Consensus 51 kr~LlVLDdv~~~~~~~~~--~l~~~l~~-~~~gs~IlvTTR~ 90 (308)
+.-++|+||+.......+. .+...+.. -.+++ +|+||..
T Consensus 164 ~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 164 APRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 3459999999754333333 34444322 12344 8888864
No 229
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=20.72 E-value=5.8e+02 Score=22.36 Aligned_cols=62 Identities=8% Similarity=0.106 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHHcC--CceEEEEEecCCCCChHHHHHHHHhhcC--CCCCcEEEEEecchHHHhhh
Q 039430 36 DPDRLQKVLRDSFN--GKRYLLVMDYVWNEDLEAWRKFKSLLLG--GANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 36 ~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~~~~~~l~~~l~~--~~~gs~IlvTTR~~~va~~~ 97 (308)
+.++....+.+.|. ++|.++|+||++.-+.+.-..+...+.. ..++..+|+..-.+.+....
T Consensus 155 ~~~~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~~l~~ai 220 (325)
T PF07693_consen 155 EVEELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPEILEKAI 220 (325)
T ss_pred HHHHHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHHHHHHHH
Confidence 34445666666664 4899999999976443333333333221 23677677766655555544
No 230
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=20.66 E-value=5.8e+02 Score=25.54 Aligned_cols=46 Identities=7% Similarity=0.088 Sum_probs=27.1
Q ss_pred ceeecCCCCchhhHhHhhhhhcccCCCCCc----hHHHHHHHHHHHcCCC
Q 039430 104 TGYNLQGLPFEDCLSLFMKCACKEERDKHP----NLIKIAKEIVKKCGGI 149 (308)
Q Consensus 104 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~----~l~~~~~~I~~~c~gl 149 (308)
.++.+.+++..+-...+.+.+-........ .-.+....|+..++|-
T Consensus 267 ~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GD 316 (637)
T TIGR00602 267 SNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGD 316 (637)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCCh
Confidence 468899999999766666655321110001 1134566777777773
No 231
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=20.65 E-value=4.4e+02 Score=25.86 Aligned_cols=96 Identities=20% Similarity=0.185 Sum_probs=55.7
Q ss_pred HHHcCCceEEEEEecCCCCChHHHH------------HHHHhhc---CCCCCcEEEEEecchHHHhhhccCC-CCceeec
Q 039430 45 RDSFNGKRYLLVMDYVWNEDLEAWR------------KFKSLLL---GGANGSKILVTTRSRKVASIMGTKG-GSTGYNL 108 (308)
Q Consensus 45 ~~~L~~kr~LlVLDdv~~~~~~~~~------------~l~~~l~---~~~~gs~IlvTTR~~~va~~~~~~~-~~~~~~l 108 (308)
.+.-+..--.||+||+..- -+|- .|+-.+. ..++.--|+-||....+...|+-.. -+..|++
T Consensus 592 ~DAYkS~lsiivvDdiErL--iD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~V 669 (744)
T KOG0741|consen 592 EDAYKSPLSIIVVDDIERL--LDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHV 669 (744)
T ss_pred HHhhcCcceEEEEcchhhh--hcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeec
Confidence 3444556689999999532 2222 2222332 2233334566777788888875321 1267899
Q ss_pred CCCCc-hhhHhHhhhhhcccCCCCCchHHHHHHHHHHHc
Q 039430 109 QGLPF-EDCLSLFMKCACKEERDKHPNLIKIAKEIVKKC 146 (308)
Q Consensus 109 ~~L~~-~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c 146 (308)
+.++. ++..+.++..-. -.+.+.+.++.+...+|
T Consensus 670 pnl~~~~~~~~vl~~~n~----fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 670 PNLTTGEQLLEVLEELNI----FSDDEVRAIAEQLLSKK 704 (744)
T ss_pred CccCchHHHHHHHHHccC----CCcchhHHHHHHHhccc
Confidence 99987 667777665431 11234556667777766
No 232
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.63 E-value=2.9e+02 Score=23.42 Aligned_cols=53 Identities=9% Similarity=0.088 Sum_probs=29.9
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
+...+..+.=+|+||..-+. +......+...+..-..+..||++|.+......
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~ 211 (251)
T PRK14251 158 IARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGR 211 (251)
T ss_pred HHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHh
Confidence 44555566678999977542 223334444444322224567777777665544
No 233
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=20.62 E-value=4.5e+02 Score=25.75 Aligned_cols=46 Identities=20% Similarity=0.123 Sum_probs=33.0
Q ss_pred EEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhhcc
Q 039430 54 LLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGT 99 (308)
Q Consensus 54 LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~ 99 (308)
-||||.|+.. ....-..+...+..-+.++.||+-|-.+.||.....
T Consensus 456 tlIFDEVD~GIsG~~A~aVg~~L~~Ls~~~QVl~VTHlPQVAa~ad~ 502 (557)
T COG0497 456 TLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVTHLPQVAAMADT 502 (557)
T ss_pred eEEEecccCCCChHHHHHHHHHHHHHhcCceEEEEecHHHHHhhhcc
Confidence 8999999763 112234456666666678889999999999987543
No 234
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=20.53 E-value=3.6e+02 Score=22.21 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=30.7
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVAS 95 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~ 95 (308)
+...+-.+.-+|+||..-.. +......+...+..-..+..||++|.+.+...
T Consensus 151 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~ 203 (220)
T cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD 203 (220)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH
Confidence 44555566679999977542 22334444454443222356888888877653
No 235
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=20.53 E-value=3.1e+02 Score=23.02 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=34.0
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcC--CCCCcEEEEEecchHHHhhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLG--GANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~--~~~gs~IlvTTR~~~va~~~ 97 (308)
.+...+..+.=+|+||..-.. +...-..+...+.. ...|..||++|.+.+.+..+
T Consensus 163 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 220 (236)
T cd03267 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEAL 220 (236)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHh
Confidence 355566667779999987553 23334445554443 22366799999988766554
No 236
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=20.52 E-value=1.1e+02 Score=19.42 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=22.2
Q ss_pred eecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHH
Q 039430 106 YNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIV 143 (308)
Q Consensus 106 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~ 143 (308)
....++++++|+.++.+.+...+ ..+.++|..|+
T Consensus 23 m~~~g~~e~~A~~~Lr~~Am~~~----~~l~~vA~~ii 56 (56)
T PF03861_consen 23 MARYGLSEDEAYRLLRRQAMRRR----RSLADVAEEII 56 (56)
T ss_dssp HHHHT--HHHHHHHHHHHHHHCT----S-HHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHcC----CCHHHHHHHHC
Confidence 44567899999999999986543 34566776664
No 237
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=20.49 E-value=3.3e+02 Score=22.33 Aligned_cols=54 Identities=22% Similarity=0.196 Sum_probs=31.7
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCC-CCCcEEEEEecchHHHhhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGG-ANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~gs~IlvTTR~~~va~~~ 97 (308)
+...|..+.=+|+||..-.. +......+...+..- ..|..||++|.+.+.+..+
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~ 198 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEY 198 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 44556667778999977542 223334444444321 2466688888877665543
No 238
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.31 E-value=3.6e+02 Score=21.31 Aligned_cols=55 Identities=25% Similarity=0.277 Sum_probs=34.0
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCC-CCCcEEEEEecchHHHhhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGG-ANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~gs~IlvTTR~~~va~~~ 97 (308)
.+...|..+.=++++|+.-.. +......+...+..- ..|..||++|.+......+
T Consensus 105 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~ 161 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL 161 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 456677778889999987553 223334444444321 2366788998887766543
No 239
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=20.30 E-value=4.4e+02 Score=25.19 Aligned_cols=114 Identities=11% Similarity=0.140 Sum_probs=70.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEE
Q 039430 5 KIWICVSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKI 84 (308)
Q Consensus 5 ~~WV~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~I 84 (308)
.+|| |.+..++..++..+++..+.......+..+....+. ...+=+|+-|+|-.+.+..+-+ ..+.....+..|
T Consensus 6 ~iLv-VDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~----~~~~~lvl~Di~mp~~~Gl~ll-~~i~~~~~~~pV 79 (464)
T COG2204 6 RILV-VDDDPDIRELLEQALELAGYEVVTAESAEEALEALS----ESPFDLVLLDIRMPGMDGLELL-KEIKSRDPDLPV 79 (464)
T ss_pred CEEE-EeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh----cCCCCEEEEecCCCCCchHHHH-HHHHhhCCCCCE
Confidence 3555 788889999999999987644334445554444333 3357778888887654434333 334444466777
Q ss_pred EEEecchHHHhhhccC-CCCceeecCCCCchhhHhHhhhhh
Q 039430 85 LVTTRSRKVASIMGTK-GGSTGYNLQGLPFEDCLSLFMKCA 124 (308)
Q Consensus 85 lvTTR~~~va~~~~~~-~~~~~~~l~~L~~~ea~~Lf~~~a 124 (308)
|+-|=..++....... .+.+-|-.+|++.+.......+..
T Consensus 80 I~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral 120 (464)
T COG2204 80 IVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERAL 120 (464)
T ss_pred EEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHH
Confidence 7777666654332211 122567888998888777765554
No 240
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=20.29 E-value=4.9e+02 Score=25.03 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=26.4
Q ss_pred EEEEecCCCCChHHHHHHHHhhcCCC-----------CCcEEEEEecc
Q 039430 54 LLVMDYVWNEDLEAWRKFKSLLLGGA-----------NGSKILVTTRS 90 (308)
Q Consensus 54 LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTTR~ 90 (308)
-|+||+|..-......+|...+..+. ...|||.||..
T Consensus 284 tL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 331 (509)
T PRK05022 284 TLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNR 331 (509)
T ss_pred EEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCC
Confidence 47999998877666777877775432 24588888864
No 241
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.28 E-value=3.5e+02 Score=22.84 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=30.0
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
.+...+-.+.=+|+||+.-.. +......+...+..-..+..||++|.+.+.+..
T Consensus 156 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~ 210 (250)
T PRK14262 156 CIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIR 210 (250)
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence 344555666779999987542 222233344433322234568888887765443
No 242
>PRK04966 hypothetical protein; Provisional
Probab=20.25 E-value=2.1e+02 Score=19.59 Aligned_cols=30 Identities=7% Similarity=0.075 Sum_probs=25.6
Q ss_pred CCCCHHHHHHHHHHHcCCceEEEEEecCCC
Q 039430 33 SNLDPDRLQKVLRDSFNGKRYLLVMDYVWN 62 (308)
Q Consensus 33 ~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~ 62 (308)
...+.++.+..++..|+..+.+||+|...+
T Consensus 31 ~E~sl~~kv~qv~~qL~~G~~viv~se~~E 60 (72)
T PRK04966 31 HERSLEQKVADVKRQLQSGEAVLVWSELHE 60 (72)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEECCCCC
Confidence 456788889999999999999999997743
No 243
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=20.22 E-value=3.9e+02 Score=21.93 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=32.4
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcC-CCCCcEEEEEecchHHHhhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLG-GANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~IlvTTR~~~va~~~ 97 (308)
.+...|..+.=+|+||..-+. +......+...+.. ...|..||++|.+.+....+
T Consensus 148 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~ 204 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETY 204 (216)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 345666677779999977542 22333344444432 12366688888887765543
No 244
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=20.21 E-value=3.3e+02 Score=22.45 Aligned_cols=57 Identities=23% Similarity=0.232 Sum_probs=32.6
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcC-CCCCcEEEEEecchHHHhhhcc
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLG-GANGSKILVTTRSRKVASIMGT 99 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~-~~~gs~IlvTTR~~~va~~~~~ 99 (308)
.+.+.+-.+.=+++||..-+. +......+...+.. ...|..||++|.+...+.....
T Consensus 147 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~ 205 (214)
T PRK13543 147 ALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRT 205 (214)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcc
Confidence 344555556668899977542 22333444444432 2235678889988777665443
No 245
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=20.17 E-value=3.4e+02 Score=22.12 Aligned_cols=54 Identities=17% Similarity=0.234 Sum_probs=32.1
Q ss_pred HHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCC-CCCcEEEEEecchHHHhhh
Q 039430 44 LRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGG-ANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~gs~IlvTTR~~~va~~~ 97 (308)
+...|-.+.=+|+||..-.. +......+...+..- ..|..||++|.+.+.+..+
T Consensus 137 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~ 192 (205)
T cd03226 137 IAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV 192 (205)
T ss_pred HHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 44556667779999977542 223334444444321 3466688888887665543
No 246
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.05 E-value=3.6e+02 Score=22.01 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=31.9
Q ss_pred HHHHHcCCceEEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhh
Q 039430 43 VLRDSFNGKRYLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASIM 97 (308)
Q Consensus 43 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~ 97 (308)
.+...+..+.=+|+||+--.. +...-..+...+.....+..||++|.+.+.....
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~ 195 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESL 195 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHh
Confidence 345666777788999977542 2233334444443322235688888877765443
No 247
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=20.02 E-value=1.7e+02 Score=30.28 Aligned_cols=39 Identities=15% Similarity=0.236 Sum_probs=28.3
Q ss_pred eEEEEEecCCCCChHHHHHHHHhhcCCC-----------CCcEEEEEecc
Q 039430 52 RYLLVMDYVWNEDLEAWRKFKSLLLGGA-----------NGSKILVTTRS 90 (308)
Q Consensus 52 r~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTTR~ 90 (308)
..+|+||++.....+.+..|...+..+. ..+-||+||..
T Consensus 668 ~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 668 YSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred CcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCc
Confidence 3599999999888788888888876541 23447777764
Done!