Query 039430
Match_columns 308
No_of_seqs 256 out of 2202
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 16:22:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 4.1E-39 1.4E-43 308.1 17.1 251 1-267 183-504 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 7.4E-31 2.5E-35 271.9 13.9 226 2-245 179-453 (1249)
3 1vt4_I APAF-1 related killer D 100.0 1.5E-29 5.1E-34 249.4 11.6 205 1-237 179-436 (1221)
4 1z6t_A APAF-1, apoptotic prote 99.9 1.1E-26 3.9E-31 223.9 13.5 222 1-242 177-450 (591)
5 1w5s_A Origin recognition comp 98.6 1.7E-06 5.9E-11 78.8 16.9 198 5-213 89-321 (412)
6 2qen_A Walker-type ATPase; unk 98.3 3.7E-06 1.3E-10 74.6 10.7 123 35-161 111-250 (350)
7 2fna_A Conserved hypothetical 98.0 1.4E-05 4.9E-10 70.9 8.9 162 36-211 123-301 (357)
8 1njg_A DNA polymerase III subu 98.0 3.8E-05 1.3E-09 63.9 10.0 106 50-160 125-231 (250)
9 2v1u_A Cell division control p 97.8 0.0011 3.9E-08 59.2 18.1 193 5-210 81-300 (387)
10 2qby_B CDC6 homolog 3, cell di 97.8 0.00043 1.5E-08 62.1 14.2 194 4-211 83-295 (384)
11 2chg_A Replication factor C sm 97.6 0.0023 7.8E-08 52.2 14.6 147 7-158 42-205 (226)
12 1fnn_A CDC6P, cell division co 97.5 0.0066 2.2E-07 54.3 17.5 199 4-213 75-301 (389)
13 1sxj_B Activator 1 37 kDa subu 97.3 0.0069 2.4E-07 52.7 14.7 147 6-157 45-210 (323)
14 2qby_A CDC6 homolog 1, cell di 97.2 0.0041 1.4E-07 55.5 12.5 194 4-210 78-296 (386)
15 1iqp_A RFCS; clamp loader, ext 96.0 0.032 1.1E-06 48.4 9.7 106 50-160 109-215 (327)
16 1jr3_A DNA polymerase III subu 95.8 0.062 2.1E-06 47.6 10.5 104 50-158 118-222 (373)
17 1a5t_A Delta prime, HOLB; zinc 94.9 1.5 5E-05 38.3 16.2 98 50-157 107-205 (334)
18 2chq_A Replication factor C sm 94.5 0.17 5.9E-06 43.5 9.2 103 50-157 101-204 (319)
19 1hqc_A RUVB; extended AAA-ATPa 94.1 0.29 9.8E-06 42.3 9.9 106 51-160 90-214 (324)
20 1jr3_D DNA polymerase III, del 94.1 0.88 3E-05 39.8 13.0 147 5-156 20-184 (343)
21 1sxj_E Activator 1 40 kDa subu 93.7 0.33 1.1E-05 42.6 9.5 103 51-157 134-237 (354)
22 3bos_A Putative DNA replicatio 93.6 0.17 5.8E-06 41.5 7.1 101 51-157 104-217 (242)
23 3te6_A Regulatory protein SIR3 93.2 3 0.0001 36.3 14.5 122 5-126 83-213 (318)
24 2z4s_A Chromosomal replication 92.5 0.55 1.9E-05 42.9 9.4 101 48-154 191-303 (440)
25 1sxj_D Activator 1 41 kDa subu 90.5 2.1 7.2E-05 37.1 10.7 103 50-157 132-235 (353)
26 3u61_B DNA polymerase accessor 89.4 5.4 0.00018 34.2 12.4 138 13-154 58-213 (324)
27 1d2n_A N-ethylmaleimide-sensit 87.3 9.1 0.00031 31.8 12.1 99 42-148 115-228 (272)
28 1sxj_A Activator 1 95 kDa subu 84.5 1.7 5.9E-05 40.4 6.6 100 50-157 147-253 (516)
29 3h4m_A Proteasome-activating n 82.4 6.2 0.00021 33.0 8.8 107 45-155 104-229 (285)
30 3pfi_A Holliday junction ATP-d 82.1 5.8 0.0002 34.2 8.7 104 50-157 105-227 (338)
31 2qz4_A Paraplegin; AAA+, SPG7, 80.1 23 0.00078 28.9 12.2 113 42-156 89-221 (262)
32 3uk6_A RUVB-like 2; hexameric 79.6 8 0.00027 33.7 8.8 93 53-155 191-301 (368)
33 1l8q_A Chromosomal replication 78.6 8.6 0.0003 32.9 8.6 92 52-151 99-202 (324)
34 3syl_A Protein CBBX; photosynt 77.5 6.1 0.00021 33.5 7.2 74 52-126 131-219 (309)
35 2qp9_X Vacuolar protein sortin 76.7 27 0.00092 30.4 11.3 106 48-157 140-261 (355)
36 1sxj_C Activator 1 40 kDa subu 74.7 18 0.00063 31.1 9.7 102 50-156 109-211 (340)
37 1g5t_A COB(I)alamin adenosyltr 72.5 4.4 0.00015 32.5 4.6 51 41-91 109-163 (196)
38 3pvs_A Replication-associated 72.4 12 0.00042 33.9 8.2 103 49-155 104-213 (447)
39 3eie_A Vacuolar protein sortin 72.4 24 0.00083 30.1 9.8 105 49-157 108-228 (322)
40 3d8b_A Fidgetin-like protein 1 69.6 35 0.0012 29.7 10.3 106 49-158 174-296 (357)
41 1xwi_A SKD1 protein; VPS4B, AA 68.5 37 0.0013 29.1 10.1 110 45-158 99-224 (322)
42 2gno_A DNA polymerase III, gam 65.8 6.7 0.00023 33.7 4.7 86 35-124 62-152 (305)
43 2c9o_A RUVB-like 1; hexameric 64.7 20 0.00069 32.4 7.9 94 53-156 297-409 (456)
44 2zan_A Vacuolar protein sortin 58.9 69 0.0024 28.8 10.4 105 49-157 225-345 (444)
45 3vfd_A Spastin; ATPase, microt 55.6 88 0.003 27.3 10.4 50 104-156 275-325 (389)
46 1jbk_A CLPB protein; beta barr 55.4 11 0.00038 28.7 3.9 68 49-120 113-194 (195)
47 2vda_B Maltoporin; sugar trans 55.0 7.7 0.00026 19.5 1.8 17 147-163 9-25 (28)
48 3lte_A Response regulator; str 52.6 42 0.0014 23.5 6.5 109 10-125 12-124 (132)
49 3b9p_A CG5977-PA, isoform A; A 50.5 1.1E+02 0.0036 25.3 9.9 105 48-156 110-232 (297)
50 3cf0_A Transitional endoplasmi 50.5 1.1E+02 0.0038 25.6 10.2 105 44-152 101-223 (301)
51 3hu3_A Transitional endoplasmi 48.1 69 0.0024 29.3 8.5 112 41-156 287-414 (489)
52 2kjq_A DNAA-related protein; s 46.4 16 0.00056 27.4 3.4 40 51-90 83-124 (149)
53 1ojl_A Transcriptional regulat 45.8 76 0.0026 26.8 8.0 38 53-90 98-146 (304)
54 3ec2_A DNA replication protein 45.5 15 0.00051 28.2 3.2 39 52-90 101-142 (180)
55 2bjv_A PSP operon transcriptio 44.2 45 0.0016 27.2 6.2 39 52-90 101-150 (265)
56 1ye8_A Protein THEP1, hypothet 43.6 62 0.0021 24.9 6.5 67 48-116 96-168 (178)
57 4aby_A DNA repair protein RECN 43.1 42 0.0014 29.6 6.2 44 53-96 317-361 (415)
58 3n70_A Transport activator; si 42.9 28 0.00094 25.7 4.2 38 53-90 78-115 (145)
59 2cx6_A Hypothetical protein YH 36.1 1E+02 0.0034 20.9 7.5 70 6-75 4-73 (90)
60 3co5_A Putative two-component 33.8 38 0.0013 24.8 3.7 39 52-90 76-115 (143)
61 2gkw_B Tumor necrosis factor r 31.5 28 0.00095 17.4 1.6 18 74-91 3-20 (26)
62 4fcw_A Chaperone protein CLPB; 30.8 77 0.0026 26.4 5.6 27 51-77 119-145 (311)
63 3eul_A Possible nitrate/nitrit 29.9 1.5E+02 0.0052 21.1 6.8 110 10-126 21-135 (152)
64 1y0n_A Hypothetical UPF0270 pr 29.3 97 0.0033 20.6 4.5 29 34-62 33-61 (78)
65 3pxi_A Negative regulator of g 28.5 83 0.0028 30.5 6.0 71 53-124 581-675 (758)
66 3hzh_A Chemotaxis response reg 28.4 1.7E+02 0.0057 21.1 7.1 109 10-122 42-153 (157)
67 3hdg_A Uncharacterized protein 26.7 1.6E+02 0.0055 20.4 6.2 108 10-124 13-123 (137)
68 2qxy_A Response regulator; reg 25.9 1.6E+02 0.0054 20.6 6.0 105 10-124 10-119 (142)
69 2ce7_A Cell division protein F 25.5 2.6E+02 0.0088 25.4 8.4 107 40-150 97-221 (476)
70 3ilh_A Two component response 24.9 1.6E+02 0.0056 20.5 5.9 116 10-127 15-140 (146)
71 2r44_A Uncharacterized protein 21.6 3.5E+02 0.012 22.5 8.7 73 53-126 111-200 (331)
72 3v2d_F 50S ribosomal protein L 21.6 2E+02 0.007 22.9 6.1 62 53-115 122-185 (210)
73 2w58_A DNAI, primosome compone 21.4 18 0.00061 28.3 -0.3 37 54-90 118-158 (202)
74 2rdm_A Response regulator rece 20.9 1.5E+02 0.005 20.4 4.8 111 10-125 11-122 (132)
75 3f6p_A Transcriptional regulat 20.2 2.1E+02 0.0071 19.3 7.5 105 10-121 8-114 (120)
76 3grc_A Sensor protein, kinase; 20.1 2.2E+02 0.0077 19.6 7.9 110 10-124 12-125 (140)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=4.1e-39 Score=308.13 Aligned_cols=251 Identities=15% Similarity=0.235 Sum_probs=183.2
Q ss_pred CCCeEEEEEeCCCC--CHHHHHHHHHHHhcCCC-------CCCCCHHHHHHHHHHHcCCc-eEEEEEecCCCCChHHHHH
Q 039430 1 HFELKIWICVSVDF--GERQIMTKIINSITGEN-------QSNLDPDRLQKVLRDSFNGK-RYLLVMDYVWNEDLEAWRK 70 (308)
Q Consensus 1 ~Fd~~~WV~vs~~~--~~~~ll~~il~~l~~~~-------~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~~~~~~~~~ 70 (308)
+|++++||++++.+ ++..++++|+.+++... ....+.+.++..+++.|+++ ||||||||||+.+...|..
T Consensus 183 ~F~~~~wv~vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~ 262 (549)
T 2a5y_B 183 NYDSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ 262 (549)
T ss_dssp TBSEEEEEECCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH
T ss_pred cCCcEEEEEECCCCCCCHHHHHHHHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc
Confidence 69999999999986 89999999999997542 12335677899999999996 9999999999963222321
Q ss_pred HHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCCh
Q 039430 71 FKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGIL 150 (308)
Q Consensus 71 l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glP 150 (308)
.+||+||||||++.++..++.. ..+|+|++|+.+|||+||.+.++... ..+.+++++++|+++|+|+|
T Consensus 263 --------~~gs~ilvTTR~~~v~~~~~~~--~~~~~l~~L~~~ea~~Lf~~~a~~~~--~~~~~~~~~~~I~~~c~GlP 330 (549)
T 2a5y_B 263 --------ELRLRCLVTTRDVEISNAASQT--CEFIEVTSLEIDECYDFLEAYGMPMP--VGEKEEDVLNKTIELSSGNP 330 (549)
T ss_dssp --------HTTCEEEEEESBGGGGGGCCSC--EEEEECCCCCHHHHHHHHHHTSCCCC----CHHHHHHHHHHHHHTTCH
T ss_pred --------cCCCEEEEEcCCHHHHHHcCCC--CeEEECCCCCHHHHHHHHHHHhcCCC--CchhHHHHHHHHHHHhCCCh
Confidence 2799999999999999887521 26799999999999999999987653 24688899999999999999
Q ss_pred HHHHHHhhhhcCCCCHHHHHHHHhhhccccccccCccchhhhhhhcCCChhhhHHHh-----------hhhcCCCCceee
Q 039430 151 LAVKTLGSLLYDSTDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVA-----------YCSIFPKDFEFD 219 (308)
Q Consensus 151 Lai~~ig~~L~~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-----------~~s~fp~~~~i~ 219 (308)
|||+++|+.|+.+ .+. |...+....+.. ....+..++.+||++||+++|.||+ |||+||+++.|+
T Consensus 331 LAl~~~g~~l~~~-~w~-~~~~l~~~l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~ 406 (549)
T 2a5y_B 331 ATLMMFFKSCEPK-TFE-KMAQLNNKLESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP 406 (549)
T ss_dssp HHHHHHHTTCCSS-SHH-HHHHHHHHHHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE
T ss_pred HHHHHHHHHhccc-hHH-HHHHhHHHhhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee
Confidence 9999999999865 322 222222222211 3467999999999999999999999 999999998877
Q ss_pred ----ccc-----------------------c-------------cceeEEchhHHHHHHHHhccccEE----------Ee
Q 039430 220 ----SYS-----------------------L-------------LFYFKMHDLMHDLALLVAKDEFLV----------VN 249 (308)
Q Consensus 220 ----~~~-----------------------l-------------~~~~~mHdlv~~~a~~~~~~e~~~----------~~ 249 (308)
... | ..+|+|||+||++|++++.+++.. ..
T Consensus 407 i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~~~~~~~~~~rl~~ 486 (549)
T 2a5y_B 407 VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTIANGISILEQRLLE 486 (549)
T ss_dssp HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHHHHHHTTSTTTSSC
T ss_pred eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 1 236999999999999998877641 11
Q ss_pred CCCCCCCCCeEEEEEEec
Q 039430 250 SDCQSIPKRVRHLSFAVA 267 (308)
Q Consensus 250 ~~~~~~~~~~r~lsi~~~ 267 (308)
......+...||++.+..
T Consensus 487 ~~~~~~~~~~r~~~~~~~ 504 (549)
T 2a5y_B 487 IGNNNVSVPERHIPSHFQ 504 (549)
T ss_dssp C-----------------
T ss_pred HhcCCCCccchhhhhhhh
Confidence 112334566788877654
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.97 E-value=7.4e-31 Score=271.90 Aligned_cols=226 Identities=23% Similarity=0.312 Sum_probs=176.1
Q ss_pred CCeEEEEEeCCCCC--HHHHHHHHHHHhcCCC----CCCCCHHHHHHHHHHHcCCc--eEEEEEecCCCCChHHHHHHHH
Q 039430 2 FELKIWICVSVDFG--ERQIMTKIINSITGEN----QSNLDPDRLQKVLRDSFNGK--RYLLVMDYVWNEDLEAWRKFKS 73 (308)
Q Consensus 2 Fd~~~WV~vs~~~~--~~~ll~~il~~l~~~~----~~~~~~~~~~~~l~~~L~~k--r~LlVLDdv~~~~~~~~~~l~~ 73 (308)
|+.++||++++..+ ....++.++..+.... ....+.+.+...++..|.++ ||||||||||+. ..|..
T Consensus 179 ~~~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~--- 253 (1249)
T 3sfz_A 179 SGGVHWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA--- 253 (1249)
T ss_dssp TTCEEEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT---
T ss_pred CCeEEEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHh---
Confidence 45788999998654 4556777888776432 23457888999999999987 999999999985 33332
Q ss_pred hhcCCCCCcEEEEEecchHHHhhh-ccCCCCceeecCC-CCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChH
Q 039430 74 LLLGGANGSKILVTTRSRKVASIM-GTKGGSTGYNLQG-LPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILL 151 (308)
Q Consensus 74 ~l~~~~~gs~IlvTTR~~~va~~~-~~~~~~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPL 151 (308)
.++||+||||||++.++..+ +.. ..+.+++ |+.+||++||...++... +.+++++++|+++|+|+||
T Consensus 254 ----~~~~~~ilvTtR~~~~~~~~~~~~---~~~~~~~~l~~~~a~~l~~~~~~~~~----~~~~~~~~~i~~~~~glPL 322 (1249)
T 3sfz_A 254 ----FDNQCQILLTTRDKSVTDSVMGPK---HVVPVESGLGREKGLEILSLFVNMKK----EDLPAEAHSIIKECKGSPL 322 (1249)
T ss_dssp ----TCSSCEEEEEESSTTTTTTCCSCB---CCEECCSSCCHHHHHHHHHHHHTSCS----TTCCTHHHHHHHHTTTCHH
T ss_pred ----hcCCCEEEEEcCCHHHHHhhcCCc---eEEEecCCCCHHHHHHHHHHhhCCCh----hhCcHHHHHHHHHhCCCHH
Confidence 36799999999999998543 333 7889996 999999999999885432 3345679999999999999
Q ss_pred HHHHHhhhhcCCCCHHHHHHHHhhhcccc----cc----ccCccchhhhhhhcCCChhhhHHHhhhhcCCCCceeecccc
Q 039430 152 AVKTLGSLLYDSTDEHFWEYVRDNEIWRL----EQ----KESGILPALRLSYDQLPPHLKQCVAYCSIFPKDFEFDSYSL 223 (308)
Q Consensus 152 ai~~ig~~L~~~~~~~~w~~~~~~~~~~~----~~----~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~~~~l 223 (308)
||+++|++|+.+. ..|+..++...... .. ....+..+|.+||+.||++.|.||+|||+||+++.|+++.+
T Consensus 323 al~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~ 400 (1249)
T 3sfz_A 323 VVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVL 400 (1249)
T ss_dssp HHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHH
T ss_pred HHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHH
Confidence 9999999998764 34665544332211 11 11358899999999999999999999999999999987655
Q ss_pred -------------------------------cceeEEchhHHHHHHHHhcccc
Q 039430 224 -------------------------------LFYFKMHDLMHDLALLVAKDEF 245 (308)
Q Consensus 224 -------------------------------~~~~~mHdlv~~~a~~~~~~e~ 245 (308)
..+|+||++||++|+..+.++.
T Consensus 401 ~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 401 CVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred HHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHHH
Confidence 2259999999999999987773
No 3
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.96 E-value=1.5e-29 Score=249.39 Aligned_cols=205 Identities=19% Similarity=0.250 Sum_probs=157.9
Q ss_pred CCCe-EEEEEeCCCCCHHHHHHHHHHHhcCC---CCC--------CCCHHHHHHHHHHHc---CCceEEEEEecCCCCCh
Q 039430 1 HFEL-KIWICVSVDFGERQIMTKIINSITGE---NQS--------NLDPDRLQKVLRDSF---NGKRYLLVMDYVWNEDL 65 (308)
Q Consensus 1 ~Fd~-~~WV~vs~~~~~~~ll~~il~~l~~~---~~~--------~~~~~~~~~~l~~~L---~~kr~LlVLDdv~~~~~ 65 (308)
+|+. ++||++++.++...++..|++.++.. ... ..+.+.+...+++.| .+||+||||||||+.
T Consensus 179 ~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~-- 256 (1221)
T 1vt4_I 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-- 256 (1221)
T ss_dssp HHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--
T ss_pred hCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--
Confidence 4776 99999999999989888888865311 011 113455677777766 789999999999995
Q ss_pred HHHHHHHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecC------CCCchhhHhHhhhhhcccCCCCCchHHHHH
Q 039430 66 EAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQ------GLPFEDCLSLFMKCACKEERDKHPNLIKIA 139 (308)
Q Consensus 66 ~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~ 139 (308)
+.|+.+ + .||+||||||++.++..+... ..+.++ +|+.+|||+||.+... .. .. ++.
T Consensus 257 eqLe~f----~---pGSRILVTTRd~~Va~~l~g~---~vy~LeL~d~dL~LS~eEA~eLF~~~~g-~~---~e---eL~ 319 (1221)
T 1vt4_I 257 KAWNAF----N---LSCKILLTTRFKQVTDFLSAA---TTTHISLDHHSMTLTPDEVKSLLLKYLD-CR---PQ---DLP 319 (1221)
T ss_dssp HHHHHH----H---SSCCEEEECSCSHHHHHHHHH---SSCEEEECSSSSCCCHHHHHHHHHHHHC-CC---TT---THH
T ss_pred HHHHhh----C---CCeEEEEeccChHHHHhcCCC---eEEEecCccccCCcCHHHHHHHHHHHcC-CC---HH---HHH
Confidence 556654 2 689999999999998755433 456666 9999999999999842 21 11 233
Q ss_pred HHHHHHcCCChHHHHHHhhhhcCCC-CHHHHHHHHhhhccccccccCccchhhhhhhcCCChhh-hHHHhhhhcCCCCce
Q 039430 140 KEIVKKCGGILLAVKTLGSLLYDST-DEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHL-KQCVAYCSIFPKDFE 217 (308)
Q Consensus 140 ~~I~~~c~glPLai~~ig~~L~~~~-~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~~s~fp~~~~ 217 (308)
.+| |+|+||||+++|+.|+.+. +..+|+.. ....+..+|.+||+.||++. |+||+|||+||+++.
T Consensus 320 ~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~ 386 (1221)
T 1vt4_I 320 REV---LTTNPRRLSIIAESIRDGLATWDNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386 (1221)
T ss_dssp HHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSC
T ss_pred HHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCC
Confidence 333 9999999999999999873 67888653 23568899999999999999 999999999999998
Q ss_pred eecccc------------------------------cceeEEchhHHHHH
Q 039430 218 FDSYSL------------------------------LFYFKMHDLMHDLA 237 (308)
Q Consensus 218 i~~~~l------------------------------~~~~~mHdlv~~~a 237 (308)
|+.+.+ ..+|+||||+++++
T Consensus 387 I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp EEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 875432 34799999999965
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=223.91 Aligned_cols=222 Identities=23% Similarity=0.337 Sum_probs=163.1
Q ss_pred CC-CeEEEEEeCCCCCHHHHHHHH---HHHhcCC----CCCCCCHHHHHHHHHHHcCC--ceEEEEEecCCCCChHHHHH
Q 039430 1 HF-ELKIWICVSVDFGERQIMTKI---INSITGE----NQSNLDPDRLQKVLRDSFNG--KRYLLVMDYVWNEDLEAWRK 70 (308)
Q Consensus 1 ~F-d~~~WV~vs~~~~~~~ll~~i---l~~l~~~----~~~~~~~~~~~~~l~~~L~~--kr~LlVLDdv~~~~~~~~~~ 70 (308)
+| +.++||+++.. +...++..+ +..++.. .....+.+.+...+.+.+.+ +++||||||||+. ..+
T Consensus 177 ~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l-- 251 (591)
T 1z6t_A 177 CFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVL-- 251 (591)
T ss_dssp HCTTCEEEEEEESC-CHHHHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHH--
T ss_pred hCCCceEEEECCCC-chHHHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHH--
Confidence 36 47999999876 333344443 4444421 22345677888889888876 7899999999974 222
Q ss_pred HHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeec---CCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcC
Q 039430 71 FKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNL---QGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCG 147 (308)
Q Consensus 71 l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~ 147 (308)
..+ +.|++||||||+..++..+.. ..+.+ ++|+.+|+++||.+.++... ....+.+.+|+++|+
T Consensus 252 --~~l---~~~~~ilvTsR~~~~~~~~~~----~~~~v~~l~~L~~~ea~~L~~~~~~~~~----~~~~~~~~~i~~~~~ 318 (591)
T 1z6t_A 252 --KAF---DSQCQILLTTRDKSVTDSVMG----PKYVVPVESSLGKEKGLEILSLFVNMKK----ADLPEQAHSIIKECK 318 (591)
T ss_dssp --HTT---CSSCEEEEEESCGGGGTTCCS----CEEEEECCSSCCHHHHHHHHHHHHTSCG----GGSCTHHHHHHHHHT
T ss_pred --HHh---cCCCeEEEECCCcHHHHhcCC----CceEeecCCCCCHHHHHHHHHHHhCCCc----ccccHHHHHHHHHhC
Confidence 223 568999999999998776532 34444 58999999999999986421 223457899999999
Q ss_pred CChHHHHHHhhhhcCCCCHHHHHHHHhhhcccc--------ccccCccchhhhhhhcCCChhhhHHHhhhhcCCCCceee
Q 039430 148 GILLAVKTLGSLLYDSTDEHFWEYVRDNEIWRL--------EQKESGILPALRLSYDQLPPHLKQCVAYCSIFPKDFEFD 219 (308)
Q Consensus 148 glPLai~~ig~~L~~~~~~~~w~~~~~~~~~~~--------~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp~~~~i~ 219 (308)
|+||||.++|+.|+... ..|....+...... ......+..++..||+.||++.|.||++||+||+++.|+
T Consensus 319 G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~ 396 (591)
T 1z6t_A 319 GSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVP 396 (591)
T ss_dssp TCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEE
T ss_pred CCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccC
Confidence 99999999999998764 35766554332211 111236788999999999999999999999999998887
Q ss_pred cccc-------------------------------cceeEEchhHHHHHHHHhc
Q 039430 220 SYSL-------------------------------LFYFKMHDLMHDLALLVAK 242 (308)
Q Consensus 220 ~~~l-------------------------------~~~~~mHdlv~~~a~~~~~ 242 (308)
...+ ..+|+||+++|++++....
T Consensus 397 ~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 397 TKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 5433 2379999999999998743
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.60 E-value=1.7e-06 Score=78.76 Aligned_cols=198 Identities=12% Similarity=0.007 Sum_probs=119.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHcC--CceEEEEEecCCCC------ChHHHHHHHHhh
Q 039430 5 KIWICVSVDFGERQIMTKIINSITGENQ-SNLDPDRLQKVLRDSFN--GKRYLLVMDYVWNE------DLEAWRKFKSLL 75 (308)
Q Consensus 5 ~~WV~vs~~~~~~~ll~~il~~l~~~~~-~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~------~~~~~~~l~~~l 75 (308)
++|+......+...++..++.+++.... ...+...+...+.+.+. +++++|||||++.- ..+.+..+...+
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~ 168 (412)
T 1w5s_A 89 QAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVH 168 (412)
T ss_dssp EEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHH
Confidence 5677776778899999999999865422 23455667777777775 67999999999762 123344444444
Q ss_pred cCC---C--CCcEEEEEecchHHHhhhc-------cCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHH
Q 039430 76 LGG---A--NGSKILVTTRSRKVASIMG-------TKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIV 143 (308)
Q Consensus 76 ~~~---~--~gs~IlvTTR~~~va~~~~-------~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~ 143 (308)
... + .+..||+||+...+...+. ... ...+.+.+|+.++++++|...+...... ..--.+....|+
T Consensus 169 ~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~-~~~i~l~~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~ 246 (412)
T 1w5s_A 169 EEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQI-GFKLHLPAYKSRELYTILEQRAELGLRD-TVWEPRHLELIS 246 (412)
T ss_dssp HHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTC-SEEEECCCCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHH
T ss_pred HhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhc-CCeeeeCCCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHH
Confidence 321 2 3445888888665432221 111 1349999999999999997664321110 111235678899
Q ss_pred HHcC------CChHHHHHHhhhhc------CC--CCHHHHHHHHhhhccccccccCccchhhhhhhcCCChhhhHHHhhh
Q 039430 144 KKCG------GILLAVKTLGSLLY------DS--TDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVAYC 209 (308)
Q Consensus 144 ~~c~------glPLai~~ig~~L~------~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~ 209 (308)
+.|+ |.|..+..+..... .. .+...+..+...... ...+.-++..||++.+.++..+
T Consensus 247 ~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~~~~l~ai 317 (412)
T 1w5s_A 247 DVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHELIILRLI 317 (412)
T ss_dssp HHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHHHHHHHHH
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHHHHHHHHH
Confidence 9999 99976655543211 11 123333332221100 2234456788999999998888
Q ss_pred hcCC
Q 039430 210 SIFP 213 (308)
Q Consensus 210 s~fp 213 (308)
+.+.
T Consensus 318 a~l~ 321 (412)
T 1w5s_A 318 AEAT 321 (412)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8653
No 6
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.29 E-value=3.7e-06 Score=74.65 Aligned_cols=123 Identities=12% Similarity=0.021 Sum_probs=79.3
Q ss_pred CCHHHHHHHHHHHcCC-ceEEEEEecCCCCC-------hHHHHHHHHhhcCCCCCcEEEEEecchHHHhhh----c---c
Q 039430 35 LDPDRLQKVLRDSFNG-KRYLLVMDYVWNED-------LEAWRKFKSLLLGGANGSKILVTTRSRKVASIM----G---T 99 (308)
Q Consensus 35 ~~~~~~~~~l~~~L~~-kr~LlVLDdv~~~~-------~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~----~---~ 99 (308)
.+.+++.+.+.+.... ++.+|||||++.-+ ...+..+...+.. ..+.++|+|++...+...+ . .
T Consensus 111 ~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~~~il~g~~~~~l~~~l~~~~~~~~ 189 (350)
T 2qen_A 111 LSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDS-LPNLKIILTGSEVGLLHDFLKITDYESP 189 (350)
T ss_dssp CCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHH-CTTEEEEEEESSHHHHHHHHCTTCTTST
T ss_pred chHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHh-cCCeEEEEECCcHHHHHHHHhhcCCCCc
Confidence 3556666667666643 38999999997632 1223334333332 2477899999876542211 1 0
Q ss_pred C--CCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhhhc
Q 039430 100 K--GGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLY 161 (308)
Q Consensus 100 ~--~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L~ 161 (308)
. .....+.+.+|+.+|+.+++...+...+.... .+.+.+|.+.|+|.|+++..++..+.
T Consensus 190 l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~---~~~~~~i~~~tgG~P~~l~~~~~~~~ 250 (350)
T 2qen_A 190 LYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVP---ENEIEEAVELLDGIPGWLVVFGVEYL 250 (350)
T ss_dssp TTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 0 01147899999999999999875432222111 35678999999999999999987643
No 7
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.03 E-value=1.4e-05 Score=70.91 Aligned_cols=162 Identities=10% Similarity=0.034 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHHcCCceEEEEEecCCCCCh---HHH-HHHHHhhcCCCCCcEEEEEecchHHHhhh----c---cCC--C
Q 039430 36 DPDRLQKVLRDSFNGKRYLLVMDYVWNEDL---EAW-RKFKSLLLGGANGSKILVTTRSRKVASIM----G---TKG--G 102 (308)
Q Consensus 36 ~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~---~~~-~~l~~~l~~~~~gs~IlvTTR~~~va~~~----~---~~~--~ 102 (308)
....+...+.+.-. ++.+|||||++.-+. ..| ..+..... ...+.++|+|++.......+ . ... .
T Consensus 123 ~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~ 200 (357)
T 2fna_A 123 SFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYD-NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRA 200 (357)
T ss_dssp CHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHH-HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCC
T ss_pred hHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHH-cCCCeEEEEEcCchHHHHHHHhccCCCCccccCc
Confidence 45556666655433 499999999976211 122 33333322 22467899999986542211 0 000 1
Q ss_pred CceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhhhcCCCCHHHHH-HHHhhhccccc
Q 039430 103 STGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLLYDSTDEHFWE-YVRDNEIWRLE 181 (308)
Q Consensus 103 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L~~~~~~~~w~-~~~~~~~~~~~ 181 (308)
...+.+.+|+.+|+.+++...+...+..... ...|++.|+|.|+++..++..+....+...|. .+.+...
T Consensus 201 ~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~---- 271 (357)
T 2fna_A 201 FSTVELKPFSREEAIEFLRRGFQEADIDFKD-----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK---- 271 (357)
T ss_dssp CEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----
T ss_pred cceeecCCCCHHHHHHHHHHHHHHcCCCCCc-----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----
Confidence 1478999999999999998755322221111 17899999999999999988765333332231 1111000
Q ss_pred cccCccchhhh-hhh--cCCChhhhHHHhhhhc
Q 039430 182 QKESGILPALR-LSY--DQLPPHLKQCVAYCSI 211 (308)
Q Consensus 182 ~~~~~i~~~l~-~sy--~~L~~~~k~cfl~~s~ 211 (308)
..+..-+. +.+ ..||+..+..+..+|.
T Consensus 272 ---~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 272 ---KLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ---HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 00111111 111 1577888888888887
No 8
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.97 E-value=3.8e-05 Score=63.89 Aligned_cols=106 Identities=13% Similarity=0.135 Sum_probs=77.3
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchHHH-hhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKVA-SIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++.+||+||++.-+...+..+...+.....+..+|+||+..... ...... ...+.+.+++.++..+++...+...+
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r--~~~i~l~~l~~~e~~~~l~~~~~~~~ 202 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR--CLQFHLKALDVEQIRHQLEHILNEEH 202 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHTT
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHH--hhhccCCCCCHHHHHHHHHHHHHhcC
Confidence 467999999998766567788888887666778899988764322 111111 25799999999999999988775433
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHhhhh
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTLGSLL 160 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L 160 (308)
.... .+....|++.|+|.|..+..+...+
T Consensus 203 ~~~~---~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 203 IAHE---PRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CCBC---HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2222 3567889999999999988776543
No 9
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.85 E-value=0.0011 Score=59.19 Aligned_cols=193 Identities=10% Similarity=-0.006 Sum_probs=112.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCC-CCCCCHHHHHHHHHHHcC--CceEEEEEecCCCCChH--HHHHHHHhh---c
Q 039430 5 KIWICVSVDFGERQIMTKIINSITGEN-QSNLDPDRLQKVLRDSFN--GKRYLLVMDYVWNEDLE--AWRKFKSLL---L 76 (308)
Q Consensus 5 ~~WV~vs~~~~~~~ll~~il~~l~~~~-~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~~--~~~~l~~~l---~ 76 (308)
.+|++.....+...++..++.+++... ....+..++...+.+.+. +++.+||||++..-... ..+.+...+ .
T Consensus 81 ~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~ 160 (387)
T 2v1u_A 81 PIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQ 160 (387)
T ss_dssp EEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGG
T ss_pred EEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchh
Confidence 567888888889999999999986432 223446677777777774 46899999999763211 122233222 2
Q ss_pred CC--CCCcEEEEEecchHHH----hhhccCCCCceeecCCCCchhhHhHhhhhhcc--cCCCCCchHHHHHHHHHHHcC-
Q 039430 77 GG--ANGSKILVTTRSRKVA----SIMGTKGGSTGYNLQGLPFEDCLSLFMKCACK--EERDKHPNLIKIAKEIVKKCG- 147 (308)
Q Consensus 77 ~~--~~gs~IlvTTR~~~va----~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~--~~~~~~~~l~~~~~~I~~~c~- 147 (308)
.. ..+..+|.||+..... ...........+.+.+++.++..+++...+.. ......+ +....+++.++
T Consensus 161 ~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 237 (387)
T 2v1u_A 161 ELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAR 237 (387)
T ss_dssp CC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHS
T ss_pred hcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHH
Confidence 21 4456788888765321 11111111147899999999999999887642 1112222 34566777777
Q ss_pred --CChH-HHHHHhhhhc-----C--CCCHHHHHHHHhhhccccccccCccchhhhhhhcCCChhhhHHHhhhh
Q 039430 148 --GILL-AVKTLGSLLY-----D--STDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVAYCS 210 (308)
Q Consensus 148 --glPL-ai~~ig~~L~-----~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s 210 (308)
|.|- ++..+..... . .-+.+.++.+.+... ...+.-++..|+.+.+..+..++
T Consensus 238 ~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~ 300 (387)
T 2v1u_A 238 EHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIM 300 (387)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHH
Confidence 9993 3333322211 1 134555555443321 12344567888888777666555
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.79 E-value=0.00043 Score=62.13 Aligned_cols=194 Identities=12% Similarity=0.034 Sum_probs=117.1
Q ss_pred eEEEEEeCCCC-CHHHHHHHHHHHhcCCCC--CCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHHH-HHhhcCCC
Q 039430 4 LKIWICVSVDF-GERQIMTKIINSITGENQ--SNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKF-KSLLLGGA 79 (308)
Q Consensus 4 ~~~WV~vs~~~-~~~~ll~~il~~l~~~~~--~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l-~~~l~~~~ 79 (308)
..+|++.+... +...++.+++.++.+... ...+...+...+.+.+..++.+|||||++.-....+..+ ...+....
T Consensus 83 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~ 162 (384)
T 2qby_B 83 KQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD 162 (384)
T ss_dssp EEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS
T ss_pred eEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC
Confidence 46677776666 888999999998854322 233456777888888887777999999965311111122 22232222
Q ss_pred CCcEEEEEecchHH----HhhhccCCCCceeecCCCCchhhHhHhhhhhcc--cCCCCCchHHHHHHHHHHHcC---CCh
Q 039430 80 NGSKILVTTRSRKV----ASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACK--EERDKHPNLIKIAKEIVKKCG---GIL 150 (308)
Q Consensus 80 ~gs~IlvTTR~~~v----a~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~--~~~~~~~~l~~~~~~I~~~c~---glP 150 (308)
.+..||+||+.... ......... ..+.+++++.++..+++...+.. ......+ +....|++.|+ |.|
T Consensus 163 ~~~~iI~~t~~~~~~~~l~~~l~sr~~-~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~ 238 (384)
T 2qby_B 163 ANISVIMISNDINVRDYMEPRVLSSLG-PSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDA 238 (384)
T ss_dssp SCEEEEEECSSTTTTTTSCHHHHHTCC-CEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCH
T ss_pred cceEEEEEECCCchHhhhCHHHHhcCC-CeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCH
Confidence 67889999987532 111111111 48999999999999999987642 1112222 44566777777 877
Q ss_pred H-HHHHHhhh--hc---CCCCHHHHHHHHhhhccccccccCccchhhhhhhcCCChhhhHHHhhhhc
Q 039430 151 L-AVKTLGSL--LY---DSTDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVAYCSI 211 (308)
Q Consensus 151 L-ai~~ig~~--L~---~~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~ 211 (308)
- |+..+-.. +. ..-+.+.+..+.+... ...+.-++..|+++.+..+..++.
T Consensus 239 r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~ 295 (384)
T 2qby_B 239 RKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIE 295 (384)
T ss_dssp HHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHH
Confidence 6 43333222 22 1245666665554321 123555678888877777666665
No 11
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.58 E-value=0.0023 Score=52.17 Aligned_cols=147 Identities=7% Similarity=0.062 Sum_probs=92.3
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcC----------CCCCCCCHHHHHHHHHHHcC------CceEEEEEecCCCCChHHHHH
Q 039430 7 WICVSVDFGERQIMTKIINSITG----------ENQSNLDPDRLQKVLRDSFN------GKRYLLVMDYVWNEDLEAWRK 70 (308)
Q Consensus 7 WV~vs~~~~~~~ll~~il~~l~~----------~~~~~~~~~~~~~~l~~~L~------~kr~LlVLDdv~~~~~~~~~~ 70 (308)
.++-.....=..+.+.+++.+.. ........+.+...+..... +++.+||+||++.-.....+.
T Consensus 42 ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~ 121 (226)
T 2chg_A 42 LFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAA 121 (226)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHH
Confidence 34333444445566666665421 11223344555555555442 578999999998866556677
Q ss_pred HHHhhcCCCCCcEEEEEecchHH-HhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCC
Q 039430 71 FKSLLLGGANGSKILVTTRSRKV-ASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGI 149 (308)
Q Consensus 71 l~~~l~~~~~gs~IlvTTR~~~v-a~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~gl 149 (308)
+...+.....+.++|+||+.... ...+... ...+.+.+++.++...++.+.+...+.... .+....|++.++|.
T Consensus 122 l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r--~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~ 196 (226)
T 2chg_A 122 LRRTMEMYSKSCRFILSCNYVSRIIEPIQSR--CAVFRFKPVPKEAMKKRLLEICEKEGVKIT---EDGLEALIYISGGD 196 (226)
T ss_dssp HHHHHHHTTTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCCeEEEEeCChhhcCHHHHHh--CceeecCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcCCC
Confidence 77777666667888988876532 1111111 147899999999999999887754332212 35667888999999
Q ss_pred hHHHHHHhh
Q 039430 150 LLAVKTLGS 158 (308)
Q Consensus 150 PLai~~ig~ 158 (308)
|..+..+..
T Consensus 197 ~r~l~~~l~ 205 (226)
T 2chg_A 197 FRKAINALQ 205 (226)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 987655443
No 12
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.49 E-value=0.0066 Score=54.29 Aligned_cols=199 Identities=12% Similarity=0.025 Sum_probs=118.9
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHcC--CceEEEEEecCCCCChHHHHHHHHhhcCCC-
Q 039430 4 LKIWICVSVDFGERQIMTKIINSITGENQ-SNLDPDRLQKVLRDSFN--GKRYLLVMDYVWNEDLEAWRKFKSLLLGGA- 79 (308)
Q Consensus 4 ~~~WV~vs~~~~~~~ll~~il~~l~~~~~-~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~- 79 (308)
..+|+..+...+...++..++..++.... ...+...+...+.+.+. +++.+||||+++.-+......+...+....
T Consensus 75 ~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~ 154 (389)
T 1fnn_A 75 RFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADK 154 (389)
T ss_dssp EEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHH
T ss_pred eEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCC
Confidence 35677777878888999999998864322 23356666677766664 568999999998766555666666654321
Q ss_pred ---CCcEEEEEecchHHHhhhcc----CCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHc------
Q 039430 80 ---NGSKILVTTRSRKVASIMGT----KGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKC------ 146 (308)
Q Consensus 80 ---~gs~IlvTTR~~~va~~~~~----~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c------ 146 (308)
.+..||++|+.......... ......+.+.+++.++..+++...+...... ..--.+....|++.+
T Consensus 155 ~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 233 (389)
T 1fnn_A 155 LGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE-GSYSEDILQMIADITGAQTPL 233 (389)
T ss_dssp HSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT-TSSCHHHHHHHHHHHSBSSTT
T ss_pred CCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHhhcccC
Confidence 46778888877654332210 0011379999999999999998876431100 111235677888888
Q ss_pred ---CCChHHHHHHhhh-hc-----C--CCCHHHHHHHHhhhccccccccCccchhhhhhhcCCChhhhHHHhhhhcCC
Q 039430 147 ---GGILLAVKTLGSL-LY-----D--STDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVAYCSIFP 213 (308)
Q Consensus 147 ---~glPLai~~ig~~-L~-----~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s~fp 213 (308)
+|.|-.+..+... .. . ..+.+....+..... ...+.-.+..|+.+.+..+..++.+.
T Consensus 234 ~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~ 301 (389)
T 1fnn_A 234 DTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSL 301 (389)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7876544433322 11 1 122332222222110 12233445678888887777666543
No 13
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.28 E-value=0.0069 Score=52.66 Aligned_cols=147 Identities=12% Similarity=0.133 Sum_probs=91.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcC----------CCCCCCCHHHHHHHHHHHc-------CCceEEEEEecCCCCChHHH
Q 039430 6 IWICVSVDFGERQIMTKIINSITG----------ENQSNLDPDRLQKVLRDSF-------NGKRYLLVMDYVWNEDLEAW 68 (308)
Q Consensus 6 ~WV~vs~~~~~~~ll~~il~~l~~----------~~~~~~~~~~~~~~l~~~L-------~~kr~LlVLDdv~~~~~~~~ 68 (308)
+.++-.....-..+.+.+++.+.+ ........+.+.+.+.... .+++.+||+||++.-....+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~ 124 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQ 124 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHH
Confidence 344444444555566666666421 1122234555555555443 45689999999987655566
Q ss_pred HHHHHhhcCCCCCcEEEEEecchH-HHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcC
Q 039430 69 RKFKSLLLGGANGSKILVTTRSRK-VASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCG 147 (308)
Q Consensus 69 ~~l~~~l~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~ 147 (308)
+.+...+.....++++|+||.... +...+... ...+.+.+++.++..+++...+...+.... .+....|++.|+
T Consensus 125 ~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~ 199 (323)
T 1sxj_B 125 QALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ--CAILRYSKLSDEDVLKRLLQIIKLEDVKYT---NDGLEAIIFTAE 199 (323)
T ss_dssp HTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHHTCCBC---HHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCceEEEEeCChhhchhHHHhh--ceEEeecCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHcC
Confidence 667777765566778888886643 22222111 257999999999999999887643322222 356788999999
Q ss_pred CChHH-HHHHh
Q 039430 148 GILLA-VKTLG 157 (308)
Q Consensus 148 glPLa-i~~ig 157 (308)
|.|.. +..+.
T Consensus 200 G~~r~a~~~l~ 210 (323)
T 1sxj_B 200 GDMRQAINNLQ 210 (323)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99954 44443
No 14
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.19 E-value=0.0041 Score=55.45 Aligned_cols=194 Identities=12% Similarity=0.037 Sum_probs=110.7
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHcC--CceEEEEEecCCCCC----hHHHHHHHHhhc
Q 039430 4 LKIWICVSVDFGERQIMTKIINSITGENQ-SNLDPDRLQKVLRDSFN--GKRYLLVMDYVWNED----LEAWRKFKSLLL 76 (308)
Q Consensus 4 ~~~WV~vs~~~~~~~ll~~il~~l~~~~~-~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~----~~~~~~l~~~l~ 76 (308)
..+|+..+...+...++..++.+++.... ...+..++...+.+.+. +++.+||||+++.-. ...+..+...+.
T Consensus 78 ~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~ 157 (386)
T 2qby_A 78 KHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINS 157 (386)
T ss_dssp EEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchh
Confidence 35677766666777888888887753321 23345666666766664 458999999996521 233445544443
Q ss_pred C-CCCCcEEEEEecchHHHhhh----ccCCCCceeecCCCCchhhHhHhhhhhccc--CCCCCchHHHHHHHHHHHcC--
Q 039430 77 G-GANGSKILVTTRSRKVASIM----GTKGGSTGYNLQGLPFEDCLSLFMKCACKE--ERDKHPNLIKIAKEIVKKCG-- 147 (308)
Q Consensus 77 ~-~~~gs~IlvTTR~~~va~~~----~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~--~~~~~~~l~~~~~~I~~~c~-- 147 (308)
. ...+..+|+||+.......+ ........+.+++++.++..+++...+... ..... .++...+++.++
T Consensus 158 ~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 234 (386)
T 2qby_A 158 EVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAARE 234 (386)
T ss_dssp SCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHT
T ss_pred hcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHh
Confidence 2 23455678888765432221 111112479999999999999998865321 11122 345566777776
Q ss_pred -CChHHHHHHhh-hh--c---C--CCCHHHHHHHHhhhccccccccCccchhhhhhhcCCChhhhHHHhhhh
Q 039430 148 -GILLAVKTLGS-LL--Y---D--STDEHFWEYVRDNEIWRLEQKESGILPALRLSYDQLPPHLKQCVAYCS 210 (308)
Q Consensus 148 -glPLai~~ig~-~L--~---~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~s 210 (308)
|.|..+..+.. .. . . .-+.+..+.+.+... ...+.-.+..||...+..+..++
T Consensus 235 ~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~ 296 (386)
T 2qby_A 235 HGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVV 296 (386)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHH
Confidence 98884443322 21 1 1 134444444433211 12345566778877776666555
No 15
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.03 E-value=0.032 Score=48.38 Aligned_cols=106 Identities=8% Similarity=0.000 Sum_probs=73.1
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchHH-HhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRKV-ASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~v-a~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++.+||+|+++.-.....+.+...+.....++++|+||....- ...+... ...+.+.+++.++...++...+...+
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr--~~~~~~~~l~~~~~~~~l~~~~~~~~ 186 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSR--CAIFRFRPLRDEDIAKRLRYIAENEG 186 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHT--EEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhh--CcEEEecCCCHHHHHHHHHHHHHhcC
Confidence 56889999999876656677787777666667888888876432 1111111 14789999999999999988764332
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHhhhh
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTLGSLL 160 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L 160 (308)
.. --.+....|++.++|.|-.+..+...+
T Consensus 187 ~~---~~~~~~~~l~~~~~g~~r~~~~~l~~~ 215 (327)
T 1iqp_A 187 LE---LTEEGLQAILYIAEGDMRRAINILQAA 215 (327)
T ss_dssp CE---ECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC---CCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 21 123567888999999998766554433
No 16
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.77 E-value=0.062 Score=47.59 Aligned_cols=104 Identities=13% Similarity=0.162 Sum_probs=71.9
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchH-HHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRK-VASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++.+||+||+..-+....+.+...+.....+..+|++|.... +...+... ...+.+.+++.++...++.+.+...+
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr--~~~i~~~~l~~~~~~~~l~~~~~~~~ 195 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSR--CLQFHLKALDVEQIRHQLEHILNEEH 195 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhh--eeEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 4678999999987665667778777776666677777776433 22222111 26789999999999999987764322
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHhh
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTLGS 158 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ig~ 158 (308)
.... .+....|++.++|.|..+..+..
T Consensus 196 ~~~~---~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 196 IAHE---PRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp CCBC---HHHHHHHHHHSSSCHHHHHHHHH
T ss_pred CCCC---HHHHHHHHHHCCCCHHHHHHHHH
Confidence 2212 34567899999999998876543
No 17
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.85 E-value=1.5 Score=38.31 Aligned_cols=98 Identities=10% Similarity=-0.019 Sum_probs=69.5
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchH-HHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRK-VASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-++|+|++..-.....+.+...+.....++.+|++|.+.. +...+... ...+++.+++.++..+.+.+.. .
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR--c~~~~~~~~~~~~~~~~L~~~~---~ 181 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR--CRLHYLAPPPEQYAVTWLSREV---T 181 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHHC---C
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc--ceeeeCCCCCHHHHHHHHHHhc---C
Confidence 4678999999987665666778888876666777777776543 33333222 2679999999999999888765 1
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
.. .+.+..+++.++|.|..+..+.
T Consensus 182 --~~---~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 182 --MS---QDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp --CC---HHHHHHHHHHTTTCHHHHHHTT
T ss_pred --CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 11 2455778999999998776544
No 18
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.51 E-value=0.17 Score=43.48 Aligned_cols=103 Identities=8% Similarity=0.057 Sum_probs=69.6
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchH-HHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRK-VASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++.++|+|++..-.....+.+...+.....++++|+||.... +...+... ...+.+.+++.++...++...+...+
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~~~ 178 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR--CAVFRFKPVPKEAMKKRLLEICEKEG 178 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTT--CEEEECCCCCHHHHHHHHHHHHHTTC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhh--CeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5688999999977655555666666666566778888876543 22222221 25799999999999999987764333
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
.... .+....|++.++|.|-.+..+.
T Consensus 179 ~~i~---~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 179 VKIT---EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp CCBC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2222 3556788899999888655443
No 19
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.14 E-value=0.29 Score=42.35 Aligned_cols=106 Identities=13% Similarity=0.005 Sum_probs=67.2
Q ss_pred ceEEEEEecCCCCChHHHHHHHHhhcCCC------------------CCcEEEEEecchH-HHhhhccCCCCceeecCCC
Q 039430 51 KRYLLVMDYVWNEDLEAWRKFKSLLLGGA------------------NGSKILVTTRSRK-VASIMGTKGGSTGYNLQGL 111 (308)
Q Consensus 51 kr~LlVLDdv~~~~~~~~~~l~~~l~~~~------------------~gs~IlvTTR~~~-va~~~~~~~~~~~~~l~~L 111 (308)
+..+|+||++..-.......+...+.... .+.++|.||.... +...+... -..++.+.++
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R-~~~~i~l~~~ 168 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSR-FGIVEHLEYY 168 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTT-CSCEEECCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhc-ccEEEecCCC
Confidence 56799999998765545555655554321 2345666665432 11111111 0157899999
Q ss_pred CchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHhhhh
Q 039430 112 PFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLGSLL 160 (308)
Q Consensus 112 ~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig~~L 160 (308)
+.+|...++.+.+...+.... .+....|++.++|.|-.+..+...+
T Consensus 169 ~~~e~~~~l~~~~~~~~~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 169 TPEELAQGVMRDARLLGVRIT---EEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CHHHHHHHHHHHHHTTTCCCC---HHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 999999999887754332222 3567889999999998887665544
No 20
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.07 E-value=0.88 Score=39.77 Aligned_cols=147 Identities=10% Similarity=-0.043 Sum_probs=93.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCC---------CCCCCCHHHHHHHHHHH-cCCceEEEEEecCCC-CChHHHHHHHH
Q 039430 5 KIWICVSVDFGERQIMTKIINSITGE---------NQSNLDPDRLQKVLRDS-FNGKRYLLVMDYVWN-EDLEAWRKFKS 73 (308)
Q Consensus 5 ~~WV~vs~~~~~~~ll~~il~~l~~~---------~~~~~~~~~~~~~l~~~-L~~kr~LlVLDdv~~-~~~~~~~~l~~ 73 (308)
..-++-.+.+-.....+.|++.+... -....+..++.+.+... +-+++-++|+|++.. -....++.+..
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~ 99 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLT 99 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHH
Confidence 33444444445556666666654211 11235666666655433 567778889999866 44356788888
Q ss_pred hhcCCCCCcEEEEEecc-------hHHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHc
Q 039430 74 LLLGGANGSKILVTTRS-------RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKC 146 (308)
Q Consensus 74 ~l~~~~~gs~IlvTTR~-------~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c 146 (308)
.+..-..++.+|++|.. ..+...+... ..+++..+++.++....+.+.+-..+... -.+.+..+++.+
T Consensus 100 ~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr--~~~~~~~~l~~~~l~~~l~~~~~~~g~~i---~~~a~~~l~~~~ 174 (343)
T 1jr3_D 100 LTGLLHDDLLLIVRGNKLSKAQENAAWFTALANR--SVQVTCQTPEQAQLPRWVAARAKQLNLEL---DDAANQVLCYCY 174 (343)
T ss_dssp HHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTT--CEEEEECCCCTTHHHHHHHHHHHHTTCEE---CHHHHHHHHHSS
T ss_pred HHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhC--ceEEEeeCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHh
Confidence 88766667777776643 2444443332 26789999999999888877764333221 235678889999
Q ss_pred CCChHHHHHH
Q 039430 147 GGILLAVKTL 156 (308)
Q Consensus 147 ~glPLai~~i 156 (308)
+|.+.++...
T Consensus 175 ~gdl~~~~~e 184 (343)
T 1jr3_D 175 EGNLLALAQA 184 (343)
T ss_dssp TTCHHHHHHH
T ss_pred chHHHHHHHH
Confidence 9988877653
No 21
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.69 E-value=0.33 Score=42.61 Aligned_cols=103 Identities=8% Similarity=0.043 Sum_probs=68.7
Q ss_pred ceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecch-HHHhhhccCCCCceeecCCCCchhhHhHhhhhhcccCC
Q 039430 51 KRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSR-KVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEER 129 (308)
Q Consensus 51 kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~ 129 (308)
+.-++|||++..-+......+...+.....++.+|++|... .+...+... ...+++.+++.++....+.+.+...+.
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR--~~~~~~~~~~~~~~~~~l~~~~~~~~~ 211 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQ--CLLIRCPAPSDSEISTILSDVVTNERI 211 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhh--ceEEecCCcCHHHHHHHHHHHHHHcCC
Confidence 55699999998876666667777776545567788777653 232222221 157899999999999999887643322
Q ss_pred CCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 130 DKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 130 ~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
..+ -.+....|++.++|.+-.+..+.
T Consensus 212 ~~~--~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 212 QLE--TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp EEC--CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCC--cHHHHHHHHHHcCCCHHHHHHHH
Confidence 212 02456788999999887665544
No 22
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.62 E-value=0.17 Score=41.46 Aligned_cols=101 Identities=13% Similarity=0.049 Sum_probs=60.4
Q ss_pred ceEEEEEecCCCCChHH--HHHHHHhhcCC-CCCc-EEEEEecch---------HHHhhhccCCCCceeecCCCCchhhH
Q 039430 51 KRYLLVMDYVWNEDLEA--WRKFKSLLLGG-ANGS-KILVTTRSR---------KVASIMGTKGGSTGYNLQGLPFEDCL 117 (308)
Q Consensus 51 kr~LlVLDdv~~~~~~~--~~~l~~~l~~~-~~gs-~IlvTTR~~---------~va~~~~~~~~~~~~~l~~L~~~ea~ 117 (308)
+..+||+||+....... .+.+...+... ..+. ++|+||+.. .+...+... .++.+.+++.++..
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~---~~i~l~~~~~~~~~ 180 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWG---LTYQLQPMMDDEKL 180 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHS---EEEECCCCCGGGHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcC---ceEEeCCCCHHHHH
Confidence 35689999997643222 23343333211 1222 477777632 222222222 57899999999999
Q ss_pred hHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 118 SLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 118 ~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
+++...+...+.... .+....|++.++|.+-.+..+.
T Consensus 181 ~~l~~~~~~~~~~~~---~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 181 AALQRRAAMRGLQLP---EDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp HHHHHHHHHTTCCCC---HHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHHccCCHHHHHHHH
Confidence 999887753332222 3566788899999876665543
No 23
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.16 E-value=3 Score=36.26 Aligned_cols=122 Identities=13% Similarity=0.067 Sum_probs=63.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhcCCCCCCC-CHHHHHHHHHHH--cCCceEEEEEecCCCCC-hHHHHHHHHhhcCCCC
Q 039430 5 KIWICVSVDFGERQIMTKIINSITGENQSNL-DPDRLQKVLRDS--FNGKRYLLVMDYVWNED-LEAWRKFKSLLLGGAN 80 (308)
Q Consensus 5 ~~WV~vs~~~~~~~ll~~il~~l~~~~~~~~-~~~~~~~~l~~~--L~~kr~LlVLDdv~~~~-~~~~~~l~~~l~~~~~ 80 (308)
.+.|+.....+...++..|++++.+...... ..+.+...+... -.+++++++||.+..-. ++-...+.........
T Consensus 83 ~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s 162 (318)
T 3te6_A 83 YIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNS 162 (318)
T ss_dssp EEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSC
T ss_pred EEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCC
Confidence 3455555667888999999999976543222 333343333332 24578999999997642 1222222221111111
Q ss_pred CcEEEEEecchH-----HHhhhccCCCCceeecCCCCchhhHhHhhhhhcc
Q 039430 81 GSKILVTTRSRK-----VASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACK 126 (308)
Q Consensus 81 gs~IlvTTR~~~-----va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 126 (308)
...||.++...+ +...........++.+.+++.+|-.+++...+..
T Consensus 163 ~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 163 KLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp CEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred cEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 122333343321 1111111111146899999999999998877643
No 24
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.53 E-value=0.55 Score=42.90 Aligned_cols=101 Identities=13% Similarity=0.047 Sum_probs=62.7
Q ss_pred cCCceEEEEEecCCCCCh--HHHHHHHHhhcC-CCCCcEEEEEecch---------HHHhhhccCCCCceeecCCCCchh
Q 039430 48 FNGKRYLLVMDYVWNEDL--EAWRKFKSLLLG-GANGSKILVTTRSR---------KVASIMGTKGGSTGYNLQGLPFED 115 (308)
Q Consensus 48 L~~kr~LlVLDdv~~~~~--~~~~~l~~~l~~-~~~gs~IlvTTR~~---------~va~~~~~~~~~~~~~l~~L~~~e 115 (308)
+..+.-+|+|||+..-.. ..-+.+...+.. ...|..||+||.+. .+...+... .++.+++++.++
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g---~~i~l~~p~~e~ 267 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG---LVAKLEPPDEET 267 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSS---BCCBCCCCCHHH
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCC---eEEEeCCCCHHH
Confidence 333567999999965321 222334444321 23567899988762 233333322 578999999999
Q ss_pred hHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHH
Q 039430 116 CLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVK 154 (308)
Q Consensus 116 a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 154 (308)
...++.+.+...+...++ ++...|++.++|.+-.+.
T Consensus 268 r~~iL~~~~~~~~~~i~~---e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 268 RKSIARKMLEIEHGELPE---EVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHHHHHHTCCCCT---THHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCH---HHHHHHHHhcCCCHHHHH
Confidence 999998887533322222 346778888988775544
No 25
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.48 E-value=2.1 Score=37.12 Aligned_cols=103 Identities=9% Similarity=0.069 Sum_probs=67.6
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchH-HHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRK-VASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+++-+|++|++..-.......+...+.......++|++|.... +....... ...+.+.+++.++....+...+...+
T Consensus 132 ~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR--~~~i~~~~~~~~~~~~~l~~~~~~~~ 209 (353)
T 1sxj_D 132 PPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ--CSKFRFKALDASNAIDRLRFISEQEN 209 (353)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH--SEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc--CceEEeCCCCHHHHHHHHHHHHHHhC
Confidence 3556999999977655556667776665555667777765432 22222111 14789999999999999888764333
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
...+ .+....|++.++|.|-.+..+.
T Consensus 210 ~~i~---~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 210 VKCD---DGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp CCCC---HHHHHHHHHHTSSCHHHHHHHH
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 2222 3567889999999988755443
No 26
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.45 E-value=5.4 Score=34.20 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=74.9
Q ss_pred CCCHHHHHHHHHHHhcCC----CCCCCCHHHHHHHHHHHcC-----CceEEEEEecCCCCC-hHHHHHHHHhhcCCCCCc
Q 039430 13 DFGERQIMTKIINSITGE----NQSNLDPDRLQKVLRDSFN-----GKRYLLVMDYVWNED-LEAWRKFKSLLLGGANGS 82 (308)
Q Consensus 13 ~~~~~~ll~~il~~l~~~----~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~-~~~~~~l~~~l~~~~~gs 82 (308)
...-..+.+.+++.++.. +......+.+...+.+... +++.+|++|++..-. .+..+.+...+.....+.
T Consensus 58 G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~ 137 (324)
T 3u61_B 58 GTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNC 137 (324)
T ss_dssp TSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGC
T ss_pred CCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCc
Confidence 334445666666665421 1122335555555554432 378899999998754 445556666555444566
Q ss_pred EEEEEecchH-HHhhhccCCCCceeecCCCCchhhHhHh-------hhhhcccCCCCCchHHHHHHHHHHHcCCChHHHH
Q 039430 83 KILVTTRSRK-VASIMGTKGGSTGYNLQGLPFEDCLSLF-------MKCACKEERDKHPNLIKIAKEIVKKCGGILLAVK 154 (308)
Q Consensus 83 ~IlvTTR~~~-va~~~~~~~~~~~~~l~~L~~~ea~~Lf-------~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~ 154 (308)
++|+||.... +...+... ..++.+.+++.++-.+++ .+.+...+....+ .+....|++.++|.+-.+.
T Consensus 138 ~iI~~~n~~~~l~~~l~sR--~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~--~~~~~~l~~~~~gd~R~a~ 213 (324)
T 3u61_B 138 SIIITANNIDGIIKPLQSR--CRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIAD--MKVVAALVKKNFPDFRKTI 213 (324)
T ss_dssp EEEEEESSGGGSCTTHHHH--SEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSC--HHHHHHHHHHTCSCTTHHH
T ss_pred EEEEEeCCccccCHHHHhh--CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHhCCCCHHHHH
Confidence 7888876543 11111111 147899999988743332 2222222221111 2566778888888665433
No 27
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=87.34 E-value=9.1 Score=31.82 Aligned_cols=99 Identities=18% Similarity=0.138 Sum_probs=53.1
Q ss_pred HHHHHHcCCceEEEEEecCCCC---------ChHHH-HHHHHhhcC---CCCCcEEEEEecchHHHhhhccCCC-Cceee
Q 039430 42 KVLRDSFNGKRYLLVMDYVWNE---------DLEAW-RKFKSLLLG---GANGSKILVTTRSRKVASIMGTKGG-STGYN 107 (308)
Q Consensus 42 ~~l~~~L~~kr~LlVLDdv~~~---------~~~~~-~~l~~~l~~---~~~gs~IlvTTR~~~va~~~~~~~~-~~~~~ 107 (308)
..+......+..+|+||++..- ....+ ..+...+.. .+.+..||.||...+....+..... ...+.
T Consensus 115 ~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~ 194 (272)
T 1d2n_A 115 KIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIH 194 (272)
T ss_dssp HHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEE
T ss_pred HHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEc
Confidence 3344444567899999998531 01122 333343332 2233446777776655433211111 25688
Q ss_pred cCCCCc-hhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCC
Q 039430 108 LQGLPF-EDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGG 148 (308)
Q Consensus 108 l~~L~~-~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~g 148 (308)
+++++. ++...++.+.. . .. .+....|++.+.|
T Consensus 195 ~p~l~~r~~i~~i~~~~~---~--~~---~~~~~~l~~~~~g 228 (272)
T 1d2n_A 195 VPNIATGEQLLEALELLG---N--FK---DKERTTIAQQVKG 228 (272)
T ss_dssp CCCEEEHHHHHHHHHHHT---C--SC---HHHHHHHHHHHTT
T ss_pred CCCccHHHHHHHHHHhcC---C--CC---HHHHHHHHHHhcC
Confidence 888888 66666655431 1 11 3456778888877
No 28
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.52 E-value=1.7 Score=40.44 Aligned_cols=100 Identities=14% Similarity=0.230 Sum_probs=60.1
Q ss_pred CceEEEEEecCCCCC---hHHHHHHHHhhcCCCCCcEEEEEecchH---HHhhhccCCCCceeecCCCCchhhHhHhhhh
Q 039430 50 GKRYLLVMDYVWNED---LEAWRKFKSLLLGGANGSKILVTTRSRK---VASIMGTKGGSTGYNLQGLPFEDCLSLFMKC 123 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~---~~~~~~l~~~l~~~~~gs~IlvTTR~~~---va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 123 (308)
+++.+|++|++..-. ...+..+...+... +..||+++.... +.. ... ....+.+.+++.++..+.+.+.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~--~~~iIli~~~~~~~~l~~-l~~--r~~~i~f~~~~~~~~~~~L~~i 221 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT--STPLILICNERNLPKMRP-FDR--VCLDIQFRRPDANSIKSRLMTI 221 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC--SSCEEEEESCTTSSTTGG-GTT--TSEEEECCCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHhc--CCCEEEEEcCCCCccchh-hHh--ceEEEEeCCCCHHHHHHHHHHH
Confidence 567899999996532 22345555555432 334555554422 211 111 1257899999999999998887
Q ss_pred hcccCCCCCchHHHHHHHHHHHcCC-ChHHHHHHh
Q 039430 124 ACKEERDKHPNLIKIAKEIVKKCGG-ILLAVKTLG 157 (308)
Q Consensus 124 a~~~~~~~~~~l~~~~~~I~~~c~g-lPLai~~ig 157 (308)
+...+....+ +....|++.++| ++-++..+.
T Consensus 222 ~~~~~~~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 222 AIREKFKLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HHHHTCCCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred HHHcCCCCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 7543332233 346788899998 555555553
No 29
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=82.40 E-value=6.2 Score=33.01 Aligned_cols=107 Identities=14% Similarity=0.054 Sum_probs=57.4
Q ss_pred HHHcCCceEEEEEecCCCC-----------ChHHHHHHHH---hhc--CCCCCcEEEEEecchHHHhh-hcc-CCCCcee
Q 039430 45 RDSFNGKRYLLVMDYVWNE-----------DLEAWRKFKS---LLL--GGANGSKILVTTRSRKVASI-MGT-KGGSTGY 106 (308)
Q Consensus 45 ~~~L~~kr~LlVLDdv~~~-----------~~~~~~~l~~---~l~--~~~~gs~IlvTTR~~~va~~-~~~-~~~~~~~ 106 (308)
......+..+|+||++..- .......+.. .+. ....+..||.||...+.... ... ..-...+
T Consensus 104 ~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i 183 (285)
T 3h4m_A 104 KLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRII 183 (285)
T ss_dssp HHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEE
T ss_pred HHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEE
Confidence 3333456689999999541 1111122322 222 22345667777765433211 100 0011468
Q ss_pred ecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCC-ChHHHHH
Q 039430 107 NLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGG-ILLAVKT 155 (308)
Q Consensus 107 ~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~g-lPLai~~ 155 (308)
.+..++.++..+++...+.......... ...+++.+.| .|-.|..
T Consensus 184 ~~~~p~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 184 EVPAPDEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp ECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred EECCCCHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHH
Confidence 9999999999999988775432222222 3566777776 4434443
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=82.07 E-value=5.8 Score=34.17 Aligned_cols=104 Identities=13% Similarity=0.017 Sum_probs=64.2
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCC------------------CCcEEEEEecchHH-HhhhccCCCCceeecCC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGA------------------NGSKILVTTRSRKV-ASIMGTKGGSTGYNLQG 110 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~------------------~gs~IlvTTR~~~v-a~~~~~~~~~~~~~l~~ 110 (308)
.+..+|+||++..-.......+...+.... ++..+|.+|..... ...+... -...+.+.+
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R-~~~~i~l~~ 183 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDR-FGMQFRLEF 183 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTT-CSEEEECCC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhh-cCEEeeCCC
Confidence 356799999998766555566666665432 12455655554322 1111111 125799999
Q ss_pred CCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHHHHHHh
Q 039430 111 LPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLAVKTLG 157 (308)
Q Consensus 111 L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLai~~ig 157 (308)
++.++...++.+.+...+.. --.+....|++.+.|.|-.+..+.
T Consensus 184 ~~~~e~~~il~~~~~~~~~~---~~~~~~~~l~~~~~G~~r~l~~~l 227 (338)
T 3pfi_A 184 YKDSELALILQKAALKLNKT---CEEKAALEIAKRSRSTPRIALRLL 227 (338)
T ss_dssp CCHHHHHHHHHHHHHHTTCE---ECHHHHHHHHHTTTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCC---CCHHHHHHHHHHHCcCHHHHHHHH
Confidence 99999999998877433221 223567788889999985554433
No 31
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.06 E-value=23 Score=28.86 Aligned_cols=113 Identities=5% Similarity=0.040 Sum_probs=59.1
Q ss_pred HHHHHHcCCceEEEEEecCCCC------------C---hHHHHHHHHhhcC--CCCCcEEEEEecchHHHh-hhcc-CCC
Q 039430 42 KVLRDSFNGKRYLLVMDYVWNE------------D---LEAWRKFKSLLLG--GANGSKILVTTRSRKVAS-IMGT-KGG 102 (308)
Q Consensus 42 ~~l~~~L~~kr~LlVLDdv~~~------------~---~~~~~~l~~~l~~--~~~gs~IlvTTR~~~va~-~~~~-~~~ 102 (308)
..+.........+|+||++..- . ......+...+.. ...+..||.||....... .... ..-
T Consensus 89 ~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~ 168 (262)
T 2qz4_A 89 SLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRL 168 (262)
T ss_dssp HHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSC
T ss_pred HHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcC
Confidence 3333334455789999999753 0 0112233333332 223456666665543221 1111 011
Q ss_pred CceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 039430 103 STGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILL-AVKTL 156 (308)
Q Consensus 103 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPL-ai~~i 156 (308)
...+.+...+.++-.+++...+...... .........+++.+.|.+- .|..+
T Consensus 169 ~~~i~i~~p~~~~r~~il~~~~~~~~~~--~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 169 DRHVFIDLPTLQERREIFEQHLKSLKLT--QSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEECCSCCHHHHHHHHHHHHHHTTCC--BTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CeEEEeCCcCHHHHHHHHHHHHHhCCCC--cchhhHHHHHHHHCCCCCHHHHHHH
Confidence 2567899999999999998876443222 1222234778888888754 44433
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=79.57 E-value=8 Score=33.68 Aligned_cols=93 Identities=11% Similarity=0.016 Sum_probs=59.0
Q ss_pred EEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc-----------------hHHHhhhccCCCCceeecCCCCchh
Q 039430 53 YLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS-----------------RKVASIMGTKGGSTGYNLQGLPFED 115 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~-----------------~~va~~~~~~~~~~~~~l~~L~~~e 115 (308)
.+|++|++..-..+....+...+...... .++++|.. ..+...+ ..+.+.+++.++
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~------~~i~~~~~~~~e 263 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL------LIVSTTPYSEKD 263 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE------EEEEECCCCHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc------cEEEecCCCHHH
Confidence 59999999877666667777777554443 34444431 2222222 457999999999
Q ss_pred hHhHhhhhhcccCCCCCchHHHHHHHHHHHcC-CChHHHHH
Q 039430 116 CLSLFMKCACKEERDKHPNLIKIAKEIVKKCG-GILLAVKT 155 (308)
Q Consensus 116 a~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~-glPLai~~ 155 (308)
...++...+...+.... .+....|++.+. |.|-.+..
T Consensus 264 ~~~il~~~~~~~~~~~~---~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 264 TKQILRIRCEEEDVEMS---EDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHHHHHHHHHHTTCCBC---HHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHhcCCCHHHHHH
Confidence 99999887754332222 345677888886 66654443
No 33
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=78.56 E-value=8.6 Score=32.92 Aligned_cols=92 Identities=8% Similarity=-0.014 Sum_probs=54.4
Q ss_pred eEEEEEecCCCCCh--HHHHHHHHhhcC-CCCCcEEEEEecch---------HHHhhhccCCCCceeecCCCCchhhHhH
Q 039430 52 RYLLVMDYVWNEDL--EAWRKFKSLLLG-GANGSKILVTTRSR---------KVASIMGTKGGSTGYNLQGLPFEDCLSL 119 (308)
Q Consensus 52 r~LlVLDdv~~~~~--~~~~~l~~~l~~-~~~gs~IlvTTR~~---------~va~~~~~~~~~~~~~l~~L~~~ea~~L 119 (308)
.-+|+|||+..-.. .....+...+.. ...|..||+||... .+...+... .++.+++ +.++...+
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~---~~i~l~~-~~~e~~~i 174 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGG---ILVEIEL-DNKTRFKI 174 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTS---EEEECCC-CHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCc---eEEEeCC-CHHHHHHH
Confidence 56999999966432 122334443321 12456788887642 222222222 5689999 99999999
Q ss_pred hhhhhcccCCCCCchHHHHHHHHHHHcCCChH
Q 039430 120 FMKCACKEERDKHPNLIKIAKEIVKKCGGILL 151 (308)
Q Consensus 120 f~~~a~~~~~~~~~~l~~~~~~I~~~c~glPL 151 (308)
+...+...+...+ .++...|++.+ |.+-
T Consensus 175 l~~~~~~~~~~l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 175 IKEKLKEFNLELR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHHHTTCCCC---HHHHHHHHHHC-SSHH
T ss_pred HHHHHHhcCCCCC---HHHHHHHHHhC-CCHH
Confidence 9888754333222 34566777777 6543
No 34
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=77.50 E-value=6.1 Score=33.48 Aligned_cols=74 Identities=7% Similarity=0.078 Sum_probs=48.6
Q ss_pred eEEEEEecCCCC---------ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh------hccCCCCceeecCCCCchhh
Q 039430 52 RYLLVMDYVWNE---------DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI------MGTKGGSTGYNLQGLPFEDC 116 (308)
Q Consensus 52 r~LlVLDdv~~~---------~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~------~~~~~~~~~~~l~~L~~~ea 116 (308)
..+|+||++..- .......+...+.....+..||.||........ +.... ...+.+++++.++-
T Consensus 131 ~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~-~~~i~~~~~~~~~~ 209 (309)
T 3syl_A 131 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRI-AHHIEFPDYSDEEL 209 (309)
T ss_dssp TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHE-EEEEEECCCCHHHH
T ss_pred CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhC-CeEEEcCCcCHHHH
Confidence 459999999732 334556677777666667788888865432111 10000 15789999999999
Q ss_pred HhHhhhhhcc
Q 039430 117 LSLFMKCACK 126 (308)
Q Consensus 117 ~~Lf~~~a~~ 126 (308)
..++...+..
T Consensus 210 ~~il~~~l~~ 219 (309)
T 3syl_A 210 FEIAGHMLDD 219 (309)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998877643
No 35
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=76.69 E-value=27 Score=30.42 Aligned_cols=106 Identities=8% Similarity=-0.060 Sum_probs=57.0
Q ss_pred cCCceEEEEEecCCCCChH-----------HHHHHHHhhc---CCCCCcEEEEEecchHH-HhhhccCCCCceeecCCCC
Q 039430 48 FNGKRYLLVMDYVWNEDLE-----------AWRKFKSLLL---GGANGSKILVTTRSRKV-ASIMGTKGGSTGYNLQGLP 112 (308)
Q Consensus 48 L~~kr~LlVLDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~IlvTTR~~~v-a~~~~~~~~~~~~~l~~L~ 112 (308)
-..+..+|+||++..-... ....+...+. ....+..||.||..... ...+... -...+.+...+
T Consensus 140 ~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rR-f~~~i~i~~P~ 218 (355)
T 2qp9_X 140 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR-FERRIYIPLPD 218 (355)
T ss_dssp HHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHT-CCEEEECCCCC
T ss_pred HHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcc-cCEEEEeCCcC
Confidence 3457799999999753210 1223333332 12344556656654321 1111111 11567889999
Q ss_pred chhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCC-hHHHHHHh
Q 039430 113 FEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGI-LLAVKTLG 157 (308)
Q Consensus 113 ~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~gl-PLai~~ig 157 (308)
.++-.+++...+........ ......|++.+.|. |-.|..+.
T Consensus 219 ~~~r~~il~~~l~~~~~~~~---~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 219 LAARTTMFEINVGDTPSVLT---KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp HHHHHHHHHHHHTTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 99999999887643321111 23457788888884 44454443
No 36
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=74.75 E-value=18 Score=31.10 Aligned_cols=102 Identities=13% Similarity=0.125 Sum_probs=63.6
Q ss_pred CceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecchH-HHhhhccCCCCceeecCCCCchhhHhHhhhhhcccC
Q 039430 50 GKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSRK-VASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKEE 128 (308)
Q Consensus 50 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~-va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~ 128 (308)
+.+-++|+|++..-.....+.+...+......+++|++|.... +....... ...+.+.+++.++..+.+.+.+-...
T Consensus 109 ~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR--~~~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ--CTRFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh--ceeEeccCCCHHHHHHHHHHHHHHcC
Confidence 3478899999976555556667666655455667777765432 22222111 14688999999998888876653222
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHH
Q 039430 129 RDKHPNLIKIAKEIVKKCGGILLAVKTL 156 (308)
Q Consensus 129 ~~~~~~l~~~~~~I~~~c~glPLai~~i 156 (308)
.... .+....|++.++|.+--+..+
T Consensus 187 ~~i~---~~~~~~i~~~s~G~~r~~~~~ 211 (340)
T 1sxj_C 187 LKLS---PNAEKALIELSNGDMRRVLNV 211 (340)
T ss_dssp CCBC---HHHHHHHHHHHTTCHHHHHHH
T ss_pred CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 2111 345678889999987754433
No 37
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=72.51 E-value=4.4 Score=32.48 Aligned_cols=51 Identities=14% Similarity=0.104 Sum_probs=33.2
Q ss_pred HHHHHHHcCCceE-EEEEecCCCC---ChHHHHHHHHhhcCCCCCcEEEEEecch
Q 039430 41 QKVLRDSFNGKRY-LLVMDYVWNE---DLEAWRKFKSLLLGGANGSKILVTTRSR 91 (308)
Q Consensus 41 ~~~l~~~L~~kr~-LlVLDdv~~~---~~~~~~~l~~~l~~~~~gs~IlvTTR~~ 91 (308)
....++.+.+.+| |||||.+-.. ..-..+.+...+..-..+.-||+|+|..
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 4445566666555 9999988321 1123455666676655667899999985
No 38
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=72.40 E-value=12 Score=33.92 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=57.1
Q ss_pred CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEE-EecchH--HHhhhccCCCCceeecCCCCchhhHhHhhhhhc
Q 039430 49 NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILV-TTRSRK--VASIMGTKGGSTGYNLQGLPFEDCLSLFMKCAC 125 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~Ilv-TTR~~~--va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 125 (308)
.+++.+|++|++..-.....+.+...+..+ ...+|. ||.+.. +...+... ..++.+.+++.++...++.+.+.
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le~~--~v~lI~att~n~~~~l~~aL~sR--~~v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIEDG--TITFIGATTENPSFELNSALLSR--ARVYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHHTT--SCEEEEEESSCGGGSSCHHHHTT--EEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHhcC--ceEEEecCCCCcccccCHHHhCc--eeEEeeCCcCHHHHHHHHHHHHH
Confidence 467899999999775444445566666542 223333 544432 11111111 15788999999999999887764
Q ss_pred ccCC----CCCchHHHHHHHHHHHcCCChHHHHH
Q 039430 126 KEER----DKHPNLIKIAKEIVKKCGGILLAVKT 155 (308)
Q Consensus 126 ~~~~----~~~~~l~~~~~~I~~~c~glPLai~~ 155 (308)
.... ....--.+....|++.++|.+-.+..
T Consensus 180 ~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 180 DKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp CTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred HHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 3110 11111235567777788886655443
No 39
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=72.36 E-value=24 Score=30.12 Aligned_cols=105 Identities=9% Similarity=-0.065 Sum_probs=58.4
Q ss_pred CCceEEEEEecCCCCCh-----------HHHHHHHHhhc---CCCCCcEEEEEecchHHH-hhhccCCCCceeecCCCCc
Q 039430 49 NGKRYLLVMDYVWNEDL-----------EAWRKFKSLLL---GGANGSKILVTTRSRKVA-SIMGTKGGSTGYNLQGLPF 113 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~~-----------~~~~~l~~~l~---~~~~gs~IlvTTR~~~va-~~~~~~~~~~~~~l~~L~~ 113 (308)
..+..+|+||++..-.. .....+...+. ....+..||.||...... ..+... -...+.+...+.
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~R-f~~~i~~~~p~~ 186 (322)
T 3eie_A 108 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR-FERRIYIPLPDL 186 (322)
T ss_dssp HTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHH-CCEEEECCCCCH
T ss_pred hcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcc-cCeEEEeCCCCH
Confidence 34668999999964210 11233443333 234455566676653221 111111 115678889999
Q ss_pred hhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCC-ChHHHHHHh
Q 039430 114 EDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGG-ILLAVKTLG 157 (308)
Q Consensus 114 ~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~g-lPLai~~ig 157 (308)
++-.+++...+....... -......|++.+.| .+-.|..+.
T Consensus 187 ~~r~~il~~~~~~~~~~~---~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 187 AARTTMFEINVGDTPCVL---TKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp HHHHHHHHHHHTTCCCCC---CHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999988775432111 12356778888887 454554443
No 40
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=69.59 E-value=35 Score=29.68 Aligned_cols=106 Identities=9% Similarity=0.009 Sum_probs=57.3
Q ss_pred CCceEEEEEecCCCC-----------ChHHHHHHHHhhcCC----CCCcEEEEEecchH-HHhhhccCCCCceeecCCCC
Q 039430 49 NGKRYLLVMDYVWNE-----------DLEAWRKFKSLLLGG----ANGSKILVTTRSRK-VASIMGTKGGSTGYNLQGLP 112 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~-----------~~~~~~~l~~~l~~~----~~gs~IlvTTR~~~-va~~~~~~~~~~~~~l~~L~ 112 (308)
..+..+|+||++..- .......+...+... ..+..||.||.... +........ ...+.+...+
T Consensus 174 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf-~~~i~i~~p~ 252 (357)
T 3d8b_A 174 CQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRL-VKRLYIPLPE 252 (357)
T ss_dssp HTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTC-CEEEECCCCC
T ss_pred hcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhC-ceEEEeCCcC
Confidence 356789999999421 001123344444321 23445555665432 211111111 1467888899
Q ss_pred chhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCC-ChHHHHHHhh
Q 039430 113 FEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGG-ILLAVKTLGS 158 (308)
Q Consensus 113 ~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~g-lPLai~~ig~ 158 (308)
.++..+++...+........ .+....|++.+.| .|-+|..+..
T Consensus 253 ~~~r~~il~~~~~~~~~~l~---~~~l~~la~~t~G~s~~dl~~l~~ 296 (357)
T 3d8b_A 253 ASARKQIVINLMSKEQCCLS---EEEIEQIVQQSDAFSGADMTQLCR 296 (357)
T ss_dssp HHHHHHHHHHHHHTSCBCCC---HHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCcc---HHHHHHHHHHcCCCCHHHHHHHHH
Confidence 99988888777643222111 3456788888888 5555655443
No 41
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=68.50 E-value=37 Score=29.08 Aligned_cols=110 Identities=14% Similarity=0.054 Sum_probs=59.1
Q ss_pred HHHcCCceEEEEEecCCCC-------ChHH----HHHHHHhhcC---CCCCcEEEEEecchHHH-hhhccCCCCceeecC
Q 039430 45 RDSFNGKRYLLVMDYVWNE-------DLEA----WRKFKSLLLG---GANGSKILVTTRSRKVA-SIMGTKGGSTGYNLQ 109 (308)
Q Consensus 45 ~~~L~~kr~LlVLDdv~~~-------~~~~----~~~l~~~l~~---~~~gs~IlvTTR~~~va-~~~~~~~~~~~~~l~ 109 (308)
...-..+..+|++|++..- .... ...+...+.. ...+..||.||...... ..+... -...+.+.
T Consensus 99 ~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rR-f~~~i~i~ 177 (322)
T 1xwi_A 99 QLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRR-FEKRIYIP 177 (322)
T ss_dssp HHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHT-CCEEEECC
T ss_pred HHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhh-cCeEEEeC
Confidence 3333457889999999652 0011 1223333332 23344555566443211 111111 11568888
Q ss_pred CCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCC-hHHHHHHhh
Q 039430 110 GLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGI-LLAVKTLGS 158 (308)
Q Consensus 110 ~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~gl-PLai~~ig~ 158 (308)
..+.++-.+++...+....... -......|++.+.|. +-.|..+..
T Consensus 178 ~P~~~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~~ 224 (322)
T 1xwi_A 178 LPEPHARAAMFKLHLGTTQNSL---TEADFRELGRKTDGYSGADISIIVR 224 (322)
T ss_dssp CCCHHHHHHHHHHHHTTCCBCC---CHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 8999999999988764322111 124567888899886 444555443
No 42
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=65.82 E-value=6.7 Score=33.68 Aligned_cols=86 Identities=10% Similarity=-0.003 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHc----CCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecch-HHHhhhccCCCCceeecC
Q 039430 35 LDPDRLQKVLRDSF----NGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRSR-KVASIMGTKGGSTGYNLQ 109 (308)
Q Consensus 35 ~~~~~~~~~l~~~L----~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~~-~va~~~~~~~~~~~~~l~ 109 (308)
...+++.+.+...- .+++-++|+|++..-.....+.|...+......+.+|++|.+. .+...+.. .++++.
T Consensus 62 ~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~S----R~~~f~ 137 (305)
T 2gno_A 62 IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKS----RVFRVV 137 (305)
T ss_dssp BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHT----TSEEEE
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHc----eeEeCC
Confidence 34555544333331 2457799999998877677788888887766777777777553 33333333 289999
Q ss_pred CCCchhhHhHhhhhh
Q 039430 110 GLPFEDCLSLFMKCA 124 (308)
Q Consensus 110 ~L~~~ea~~Lf~~~a 124 (308)
+++.++....+.+.+
T Consensus 138 ~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 138 VNVPKEFRDLVKEKI 152 (305)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999887765
No 43
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=64.65 E-value=20 Score=32.44 Aligned_cols=94 Identities=11% Similarity=0.007 Sum_probs=59.8
Q ss_pred EEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEe----------c----ch----HHHhhhccCCCCceeecCCCCch
Q 039430 53 YLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTT----------R----SR----KVASIMGTKGGSTGYNLQGLPFE 114 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTT----------R----~~----~va~~~~~~~~~~~~~l~~L~~~ 114 (308)
-++++|++..-+.+..+.|...+...... .+|+.| . -. .+...+ ..+.+.+++.+
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~------~~~~~~~~~~~ 369 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV------MIIRTMLYTPQ 369 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE------EEEECCCCCHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc------ceeeCCCCCHH
Confidence 38999999887767788888877765444 344344 2 11 122222 45799999999
Q ss_pred hhHhHhhhhhcccCCCCCchHHHHHHHHHHHc-CCChHHHHHH
Q 039430 115 DCLSLFMKCACKEERDKHPNLIKIAKEIVKKC-GGILLAVKTL 156 (308)
Q Consensus 115 ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c-~glPLai~~i 156 (308)
+..+.+...+-..+.... .+....|++.+ +|.|-....+
T Consensus 370 e~~~iL~~~~~~~~~~~~---~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 370 EMKQIIKIRAQTEGINIS---EEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHHHHHTCCBC---HHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCC---HHHHHHHHHHccCCCHHHHHHH
Confidence 999999877632222112 24566777777 7777655443
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=58.93 E-value=69 Score=28.77 Aligned_cols=105 Identities=13% Similarity=0.048 Sum_probs=56.7
Q ss_pred CCceEEEEEecCCCCC-------hHHH----HHHHHhhcC---CCCCcEEEEEecchHHHh-hhccCCCCceeecCCCCc
Q 039430 49 NGKRYLLVMDYVWNED-------LEAW----RKFKSLLLG---GANGSKILVTTRSRKVAS-IMGTKGGSTGYNLQGLPF 113 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~-------~~~~----~~l~~~l~~---~~~gs~IlvTTR~~~va~-~~~~~~~~~~~~l~~L~~ 113 (308)
..+..+|+||++..-. .... ..+...+.. ...+..||.||....... .+... -...+.+...+.
T Consensus 225 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rR-f~~~i~i~~P~~ 303 (444)
T 2zan_A 225 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRR-FEKRIYIPLPEA 303 (444)
T ss_dssp HSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTT-CCEEEECCCCCH
T ss_pred HcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhh-cceEEEeCCcCH
Confidence 3567899999997530 0111 223333322 234556666665442211 11111 114678888888
Q ss_pred hhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCC-hHHHHHHh
Q 039430 114 EDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGI-LLAVKTLG 157 (308)
Q Consensus 114 ~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~gl-PLai~~ig 157 (308)
++-..+|...+....... -......|++.+.|. +-.|..+.
T Consensus 304 ~~r~~il~~~l~~~~~~l---~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 304 HARAAMFRLHLGSTQNSL---TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp HHHHHHHHHHHTTSCEEC---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 888888888764322111 124457788889884 44555443
No 45
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=55.63 E-value=88 Score=27.34 Aligned_cols=50 Identities=16% Similarity=0.086 Sum_probs=33.5
Q ss_pred ceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 039430 104 TGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILL-AVKTL 156 (308)
Q Consensus 104 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPL-ai~~i 156 (308)
..+.+...+.++...++...+....... ..+....|++.+.|..- +|..+
T Consensus 275 ~~i~i~~p~~~~r~~il~~~~~~~~~~l---~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 275 KRVYVSLPNEETRLLLLKNLLCKQGSPL---TQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp EEEECCCCCHHHHHHHHHHHHTTSCCCS---CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred eEEEcCCcCHHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHcCCCCHHHHHHH
Confidence 4688899999999999987764332221 23456788888888544 55444
No 46
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=55.41 E-value=11 Score=28.70 Aligned_cols=68 Identities=12% Similarity=0.109 Sum_probs=37.4
Q ss_pred CCceEEEEEecCCCCC--------hHHHHHHHHhhcCCCCCcEEEEEecchHHHh------hhccCCCCceeecCCCCch
Q 039430 49 NGKRYLLVMDYVWNED--------LEAWRKFKSLLLGGANGSKILVTTRSRKVAS------IMGTKGGSTGYNLQGLPFE 114 (308)
Q Consensus 49 ~~kr~LlVLDdv~~~~--------~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~------~~~~~~~~~~~~l~~L~~~ 114 (308)
.+++.+|||||+..-. ......+...+.. .+..+|.||....... .+... -..+.+.+++.+
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~l~~r--~~~i~~~~p~~~ 188 (195)
T 1jbk_A 113 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATTLDEYRQYIEKDAALERR--FQKVFVAEPSVE 188 (195)
T ss_dssp STTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEECHHHHHHHTTTCHHHHTT--EEEEECCCCCHH
T ss_pred cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCCHHHHHHHHhcCHHHHHH--hceeecCCCCHH
Confidence 3567899999996531 1112333433332 2345677776554321 11111 135788888888
Q ss_pred hhHhHh
Q 039430 115 DCLSLF 120 (308)
Q Consensus 115 ea~~Lf 120 (308)
+..+++
T Consensus 189 ~~~~il 194 (195)
T 1jbk_A 189 DTIAIL 194 (195)
T ss_dssp HHHTTC
T ss_pred HHHHHh
Confidence 876665
No 47
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=54.98 E-value=7.7 Score=19.51 Aligned_cols=17 Identities=18% Similarity=0.200 Sum_probs=14.3
Q ss_pred CCChHHHHHHhhhhcCC
Q 039430 147 GGILLAVKTLGSLLYDS 163 (308)
Q Consensus 147 ~glPLai~~ig~~L~~~ 163 (308)
.-+|||+.++++.+..+
T Consensus 9 rklplavav~agv~~aq 25 (28)
T 2vda_B 9 RKLPLAVAVAAGVMSAQ 25 (28)
T ss_dssp CCCTHHHHHHHHTTCCC
T ss_pred ccCchHHHHHHHHhHhh
Confidence 46999999999988754
No 48
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=52.59 E-value=42 Score=23.51 Aligned_cols=109 Identities=14% Similarity=0.080 Sum_probs=57.4
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHhhcCCC--CCcEEEEE
Q 039430 10 VSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGA--NGSKILVT 87 (308)
Q Consensus 10 vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~--~gs~IlvT 87 (308)
|.........++.++++.+..-....+.++....+.+ .+--++|+|---.. ...++ +...+.... ....|+++
T Consensus 12 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~---~~~dlii~d~~l~~-~~g~~-~~~~l~~~~~~~~~~ii~~ 86 (132)
T 3lte_A 12 VDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLST---FEPAIMTLDLSMPK-LDGLD-VIRSLRQNKVANQPKILVV 86 (132)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH---TCCSEEEEESCBTT-BCHHH-HHHHHHTTTCSSCCEEEEE
T ss_pred EECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHh---cCCCEEEEecCCCC-CCHHH-HHHHHHhcCccCCCeEEEE
Confidence 5666667788888888754322233445555554443 23447888744322 12233 333343322 45678877
Q ss_pred ecchH-HH-hhhccCCCCceeecCCCCchhhHhHhhhhhc
Q 039430 88 TRSRK-VA-SIMGTKGGSTGYNLQGLPFEDCLSLFMKCAC 125 (308)
Q Consensus 88 TR~~~-va-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 125 (308)
|.... .. ..... +..-|-.++++.++-...+.+...
T Consensus 87 ~~~~~~~~~~~~~~--g~~~~l~kP~~~~~l~~~i~~~~~ 124 (132)
T 3lte_A 87 SGLDKAKLQQAVTE--GADDYLEKPFDNDALLDRIHDLVN 124 (132)
T ss_dssp CCSCSHHHHHHHHH--TCCEEECSSCCHHHHHHHHHHHHC
T ss_pred eCCChHHHHHHHHh--ChHHHhhCCCCHHHHHHHHHHHcC
Confidence 76432 21 11111 124577778887777666666553
No 49
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=50.55 E-value=1.1e+02 Score=25.35 Aligned_cols=105 Identities=10% Similarity=-0.017 Sum_probs=54.5
Q ss_pred cCCceEEEEEecCCCCC-----------hHHHHHHHHhh---cCC--CCCcEEEEEecchHH-HhhhccCCCCceeecCC
Q 039430 48 FNGKRYLLVMDYVWNED-----------LEAWRKFKSLL---LGG--ANGSKILVTTRSRKV-ASIMGTKGGSTGYNLQG 110 (308)
Q Consensus 48 L~~kr~LlVLDdv~~~~-----------~~~~~~l~~~l---~~~--~~gs~IlvTTR~~~v-a~~~~~~~~~~~~~l~~ 110 (308)
...+..+|+||++..-. ......+...+ +.. +.+..||.||..... ........ ...+.+..
T Consensus 110 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~-~~~i~~~~ 188 (297)
T 3b9p_A 110 RHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRF-TKRVYVSL 188 (297)
T ss_dssp HHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHC-CEEEECCC
T ss_pred HHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhC-CeEEEeCC
Confidence 34567899999995421 11112232222 221 134556667765321 11111010 14677888
Q ss_pred CCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 039430 111 LPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILL-AVKTL 156 (308)
Q Consensus 111 L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPL-ai~~i 156 (308)
.+.++...++...+........ .+....|++.+.|.+- ++..+
T Consensus 189 p~~~~r~~il~~~~~~~~~~~~---~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 189 PDEQTRELLLNRLLQKQGSPLD---TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CCHHHHHHHHHHHHGGGSCCSC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 8888888888776643221111 2456778888988775 55443
No 50
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=50.54 E-value=1.1e+02 Score=25.56 Aligned_cols=105 Identities=10% Similarity=0.001 Sum_probs=55.6
Q ss_pred HHHHcCCceEEEEEecCCCCC--------------hHHHHHHHHhhcC--CCCCcEEEEEecchHHHhh-h-ccCCCCce
Q 039430 44 LRDSFNGKRYLLVMDYVWNED--------------LEAWRKFKSLLLG--GANGSKILVTTRSRKVASI-M-GTKGGSTG 105 (308)
Q Consensus 44 l~~~L~~kr~LlVLDdv~~~~--------------~~~~~~l~~~l~~--~~~gs~IlvTTR~~~va~~-~-~~~~~~~~ 105 (308)
+.........+|+||++..-. ......+...+.. ...+..||.||...+.... . ....-...
T Consensus 101 f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~ 180 (301)
T 3cf0_A 101 FDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQL 180 (301)
T ss_dssp HHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEE
T ss_pred HHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceE
Confidence 333334567999999996310 0112344444432 2334567777765533221 1 11011256
Q ss_pred eecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCChHH
Q 039430 106 YNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGILLA 152 (308)
Q Consensus 106 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glPLa 152 (308)
+.+...+.++-.+++...+..........+ ..+++.+.|.|-+
T Consensus 181 i~i~~p~~~~r~~il~~~l~~~~~~~~~~~----~~la~~~~g~sg~ 223 (301)
T 3cf0_A 181 IYIPLPDEKSRVAILKANLRKSPVAKDVDL----EFLAKMTNGFSGA 223 (301)
T ss_dssp EECCCCCHHHHHHHHHHHHTTSCBCSSCCH----HHHHHTCSSCCHH
T ss_pred EecCCcCHHHHHHHHHHHHccCCCCccchH----HHHHHHcCCCCHH
Confidence 889999999988888776643221111222 3455667776643
No 51
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=48.06 E-value=69 Score=29.32 Aligned_cols=112 Identities=7% Similarity=0.038 Sum_probs=58.5
Q ss_pred HHHHHHHcCCceEEEEEecCCCC--------C---hHHHHHHHHhhcC--CCCCcEEEEEecchHH-Hhhhcc-CCCCce
Q 039430 41 QKVLRDSFNGKRYLLVMDYVWNE--------D---LEAWRKFKSLLLG--GANGSKILVTTRSRKV-ASIMGT-KGGSTG 105 (308)
Q Consensus 41 ~~~l~~~L~~kr~LlVLDdv~~~--------~---~~~~~~l~~~l~~--~~~gs~IlvTTR~~~v-a~~~~~-~~~~~~ 105 (308)
...+.....++..+|+||++..- . ......|...+.. ...+..||.||...+. ...+.. ..-...
T Consensus 287 ~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~ 366 (489)
T 3hu3_A 287 RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDRE 366 (489)
T ss_dssp HHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEE
T ss_pred HHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceE
Confidence 33444444567789999999321 1 0112334444432 2234455556654432 222211 011246
Q ss_pred eecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCC-hHHHHHH
Q 039430 106 YNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGI-LLAVKTL 156 (308)
Q Consensus 106 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~gl-PLai~~i 156 (308)
+.+...+.++-.+++...+.......... ..++++.+.|. +-.+..+
T Consensus 367 i~i~~P~~~eR~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 367 VDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EECCCCCHHHHHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 88999999999999988764332222222 24566677764 4444433
No 52
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=46.36 E-value=16 Score=27.37 Aligned_cols=40 Identities=18% Similarity=0.096 Sum_probs=21.8
Q ss_pred ceEEEEEecCCCCChHHHHHHHHhhcC-CCCCc-EEEEEecc
Q 039430 51 KRYLLVMDYVWNEDLEAWRKFKSLLLG-GANGS-KILVTTRS 90 (308)
Q Consensus 51 kr~LlVLDdv~~~~~~~~~~l~~~l~~-~~~gs-~IlvTTR~ 90 (308)
+.-+|||||+.......-+.+...+.. ...|. +||+||+.
T Consensus 83 ~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred CCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 455889999976543332333333321 11233 48888874
No 53
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=45.79 E-value=76 Score=26.77 Aligned_cols=38 Identities=8% Similarity=0.017 Sum_probs=25.7
Q ss_pred EEEEEecCCCCChHHHHHHHHhhcCCC-----------CCcEEEEEecc
Q 039430 53 YLLVMDYVWNEDLEAWRKFKSLLLGGA-----------NGSKILVTTRS 90 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~gs~IlvTTR~ 90 (308)
-.|+||++..-.......+...+.... ...+||.||..
T Consensus 98 g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~ 146 (304)
T 1ojl_A 98 GTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHR 146 (304)
T ss_dssp SEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESS
T ss_pred CEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCc
Confidence 479999998876555566666665431 34678777765
No 54
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=45.54 E-value=15 Score=28.23 Aligned_cols=39 Identities=23% Similarity=0.289 Sum_probs=22.6
Q ss_pred eEEEEEecCCCCChHHHH--HHHHhhcC-CCCCcEEEEEecc
Q 039430 52 RYLLVMDYVWNEDLEAWR--KFKSLLLG-GANGSKILVTTRS 90 (308)
Q Consensus 52 r~LlVLDdv~~~~~~~~~--~l~~~l~~-~~~gs~IlvTTR~ 90 (308)
.-+|||||+.....+.|. .+...+.. ...|..||+||..
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 458999999843223343 23333322 1246778888863
No 55
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=44.24 E-value=45 Score=27.23 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=25.5
Q ss_pred eEEEEEecCCCCChHHHHHHHHhhcCC-----------CCCcEEEEEecc
Q 039430 52 RYLLVMDYVWNEDLEAWRKFKSLLLGG-----------ANGSKILVTTRS 90 (308)
Q Consensus 52 r~LlVLDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IlvTTR~ 90 (308)
.-+|+||++..-.......+...+..+ ..+.+||.||..
T Consensus 101 ~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~ 150 (265)
T 2bjv_A 101 GGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNA 150 (265)
T ss_dssp TSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESS
T ss_pred CcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCc
Confidence 358999999886655555666655432 134578887765
No 56
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=43.58 E-value=62 Score=24.91 Aligned_cols=67 Identities=7% Similarity=0.071 Sum_probs=38.1
Q ss_pred cCCceEEEEEecC--CC-CChHHHHHHHHhhcCCCCCcEEEEEe---cchHHHhhhccCCCCceeecCCCCchhh
Q 039430 48 FNGKRYLLVMDYV--WN-EDLEAWRKFKSLLLGGANGSKILVTT---RSRKVASIMGTKGGSTGYNLQGLPFEDC 116 (308)
Q Consensus 48 L~~kr~LlVLDdv--~~-~~~~~~~~l~~~l~~~~~gs~IlvTT---R~~~va~~~~~~~~~~~~~l~~L~~~ea 116 (308)
+..+.-+|+||.+ -+ .+...-..+...+.. .+..+|++| .+...+..+.....+.++.+...+.++.
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~ 168 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVI 168 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHH
Confidence 5566679999994 22 222334456666654 344466666 3555555554433346788776665444
No 57
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=43.06 E-value=42 Score=29.58 Aligned_cols=44 Identities=23% Similarity=0.068 Sum_probs=28.4
Q ss_pred EEEEEecCCCC-ChHHHHHHHHhhcCCCCCcEEEEEecchHHHhh
Q 039430 53 YLLVMDYVWNE-DLEAWRKFKSLLLGGANGSKILVTTRSRKVASI 96 (308)
Q Consensus 53 ~LlVLDdv~~~-~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~ 96 (308)
-+|+||++-+. +......+...+..-..|..||++|-+..++..
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~ 361 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAAR 361 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhh
Confidence 68999999653 333344455544432246778888888888754
No 58
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=42.89 E-value=28 Score=25.69 Aligned_cols=38 Identities=11% Similarity=-0.073 Sum_probs=27.4
Q ss_pred EEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEecc
Q 039430 53 YLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTRS 90 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR~ 90 (308)
..|+||++..-.......+...+.......+||.||..
T Consensus 78 g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 47899999887665666777777555556678777764
No 59
>2cx6_A Hypothetical protein YHCO; barstar, ribonuclease inhibitor, RSGI, structural genomics; 2.43A {Escherichia coli} SCOP: c.9.1.1
Probab=36.10 E-value=1e+02 Score=20.91 Aligned_cols=70 Identities=9% Similarity=-0.040 Sum_probs=51.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHhh
Q 039430 6 IWICVSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLL 75 (308)
Q Consensus 6 ~WV~vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l 75 (308)
+-+..+.-.+..++++.+.++++.+..-..+.+.+-+.|...+....+.|++-+........+..+...+
T Consensus 4 ~~iD~~~i~~~~~f~~~~~~~~~~p~~fG~NlDAL~D~Lt~~~~~~P~~i~~~~~~~~~~~~~~~ll~vf 73 (90)
T 2cx6_A 4 YTFDFDEIESQEDFYRDFSQTFGLAKDKVRDLDSLWDVLMNDVLPLPLEIEFVHLGEKTRRRFGALILLF 73 (90)
T ss_dssp EEEETTSCCSHHHHHHHHHHHTTCCTTSCSSHHHHHHHHHTTCSCSSEEEEEESCCHHHHHHTHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCCchhhCCCHHHHHHHHccCCCCCCEEEEEEeCchhhHHHHHHHHHHH
Confidence 4466778888999999999999877766789999998888766466799999998432223344454444
No 60
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=33.76 E-value=38 Score=24.82 Aligned_cols=39 Identities=3% Similarity=-0.060 Sum_probs=25.9
Q ss_pred eEEEEEecCCCCChHHHHHHHHhhcCC-CCCcEEEEEecc
Q 039430 52 RYLLVMDYVWNEDLEAWRKFKSLLLGG-ANGSKILVTTRS 90 (308)
Q Consensus 52 r~LlVLDdv~~~~~~~~~~l~~~l~~~-~~gs~IlvTTR~ 90 (308)
.-.|+||++..-..+....+...+... ..+.+||.||..
T Consensus 76 ~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 76 GGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp TSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred CCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 357899999887655556666665543 345678887753
No 61
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=31.46 E-value=28 Score=17.38 Aligned_cols=18 Identities=33% Similarity=0.294 Sum_probs=13.5
Q ss_pred hhcCCCCCcEEEEEecch
Q 039430 74 LLLGGANGSKILVTTRSR 91 (308)
Q Consensus 74 ~l~~~~~gs~IlvTTR~~ 91 (308)
++|....|+.++|||...
T Consensus 3 PlPa~eeGaT~lVtTKT~ 20 (26)
T 2gkw_B 3 PVPATELGSTELVTTKTA 20 (26)
T ss_pred cccccccCceEEEEeccC
Confidence 356667799999999743
No 62
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=30.78 E-value=77 Score=26.36 Aligned_cols=27 Identities=7% Similarity=0.144 Sum_probs=19.7
Q ss_pred ceEEEEEecCCCCChHHHHHHHHhhcC
Q 039430 51 KRYLLVMDYVWNEDLEAWRKFKSLLLG 77 (308)
Q Consensus 51 kr~LlVLDdv~~~~~~~~~~l~~~l~~ 77 (308)
...+|+||++..-.......+...+..
T Consensus 119 ~~~vl~lDEi~~l~~~~~~~Ll~~le~ 145 (311)
T 4fcw_A 119 PYSVILFDAIEKAHPDVFNILLQMLDD 145 (311)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHH
T ss_pred CCeEEEEeChhhcCHHHHHHHHHHHhc
Confidence 347999999987766666777776643
No 63
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=29.89 E-value=1.5e+02 Score=21.10 Aligned_cols=110 Identities=9% Similarity=0.105 Sum_probs=58.3
Q ss_pred eCCCCCHHHHHHHHHHHhcCC--CCCCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEE
Q 039430 10 VSVDFGERQIMTKIINSITGE--NQSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVT 87 (308)
Q Consensus 10 vs~~~~~~~ll~~il~~l~~~--~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvT 87 (308)
+.......+.++.++++.+.. -....+.++..+.+.+. +-=++|+|--... .+.++ +...+........||+.
T Consensus 21 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~---~~dlii~d~~l~~-~~g~~-~~~~l~~~~~~~~ii~~ 95 (152)
T 3eul_A 21 GDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH---LPDVALLDYRMPG-MDGAQ-VAAAVRSYELPTRVLLI 95 (152)
T ss_dssp ECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH---CCSEEEEETTCSS-SCHHH-HHHHHHHTTCSCEEEEE
T ss_pred EcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc---CCCEEEEeCCCCC-CCHHH-HHHHHHhcCCCCeEEEE
Confidence 556666778888888876522 11344566666655543 3348888844322 12222 33333333445566665
Q ss_pred ecchHH--H-hhhccCCCCceeecCCCCchhhHhHhhhhhcc
Q 039430 88 TRSRKV--A-SIMGTKGGSTGYNLQGLPFEDCLSLFMKCACK 126 (308)
Q Consensus 88 TR~~~v--a-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~ 126 (308)
|-..+. . ..+.. +..-|-.++++.++-...+.+.+.+
T Consensus 96 s~~~~~~~~~~~~~~--g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 96 SAHDEPAIVYQALQQ--GAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp ESCCCHHHHHHHHHT--TCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred EccCCHHHHHHHHHc--CCCEEEecCCCHHHHHHHHHHHHcC
Confidence 543221 1 11111 1245677788887777766665543
No 64
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=29.29 E-value=97 Score=20.56 Aligned_cols=29 Identities=10% Similarity=0.040 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHcCCceEEEEEecCCC
Q 039430 34 NLDPDRLQKVLRDSFNGKRYLLVMDYVWN 62 (308)
Q Consensus 34 ~~~~~~~~~~l~~~L~~kr~LlVLDdv~~ 62 (308)
..+.++.+..+++.|+....+||+|...+
T Consensus 33 E~sL~~kv~qv~~qL~~GeavIvfse~~E 61 (78)
T 1y0n_A 33 ETPLDVRVERARHALRRGEAVILFDPESQ 61 (78)
T ss_dssp -CCHHHHHHHHHHHHHTTSEEEEECTTTC
T ss_pred cccHHHHHHHHHHHHHcCCEEEEECCCCC
Confidence 67788888999999999999999997744
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=28.54 E-value=83 Score=30.46 Aligned_cols=71 Identities=10% Similarity=0.137 Sum_probs=42.0
Q ss_pred EEEEEecCCCCChHHHHHHHHhhcCC-----------CCCcEEEEEecc-----hHH----Hhhhc----cCCCCceeec
Q 039430 53 YLLVMDYVWNEDLEAWRKFKSLLLGG-----------ANGSKILVTTRS-----RKV----ASIMG----TKGGSTGYNL 108 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IlvTTR~-----~~v----a~~~~----~~~~~~~~~l 108 (308)
.+|+||++.....+....|...+..+ ....+||+||.. ..+ ..... .. -+.++.+
T Consensus 581 ~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~R-l~~~i~~ 659 (758)
T 3pxi_A 581 SVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINR-IDEIIVF 659 (758)
T ss_dssp SEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTT-SSEEEEC
T ss_pred eEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhh-CCeEEec
Confidence 48999999887766667777766542 134578888872 111 11110 11 0146788
Q ss_pred CCCCchhhHhHhhhhh
Q 039430 109 QGLPFEDCLSLFMKCA 124 (308)
Q Consensus 109 ~~L~~~ea~~Lf~~~a 124 (308)
.+++.++-..++...+
T Consensus 660 ~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 660 HSLEKKHLTEIVSLMS 675 (758)
T ss_dssp C--CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 8888888777776544
No 66
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=28.37 E-value=1.7e+02 Score=21.12 Aligned_cols=109 Identities=10% Similarity=0.097 Sum_probs=52.8
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCC-CCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEe
Q 039430 10 VSVDFGERQIMTKIINSITGENQ-SNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTT 88 (308)
Q Consensus 10 vs~~~~~~~ll~~il~~l~~~~~-~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTT 88 (308)
+.........++.++++.+.... ...+.++....+.+.- .+--|+|+|---.. ...++ +...+........||+.|
T Consensus 42 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~-~~~dliilD~~l~~-~~g~~-~~~~lr~~~~~~~ii~ls 118 (157)
T 3hzh_A 42 VDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHY-PNIDIVTLXITMPK-MDGIT-CLSNIMEFDKNARVIMIS 118 (157)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHG-GGCCEEEECSSCSS-SCHHH-HHHHHHHHCTTCCEEEEE
T ss_pred EeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcC-CCCCEEEEeccCCC-ccHHH-HHHHHHhhCCCCcEEEEe
Confidence 45556677788888887643322 3445666665555431 02348888743221 12222 222222222445566555
Q ss_pred cc--hHHHhhhccCCCCceeecCCCCchhhHhHhhh
Q 039430 89 RS--RKVASIMGTKGGSTGYNLQGLPFEDCLSLFMK 122 (308)
Q Consensus 89 R~--~~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~ 122 (308)
-. ......+-.. +..-|-.++++.++-...+.+
T Consensus 119 ~~~~~~~~~~~~~~-g~~~~l~KP~~~~~l~~~i~~ 153 (157)
T 3hzh_A 119 ALGKEQLVKDCLIK-GAKTFIVKPLDRAKVLQRVMS 153 (157)
T ss_dssp SCCCHHHHHHHHHT-TCSEEEESSCCHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHc-CCCEEEeCCCCHHHHHHHHHH
Confidence 43 2222111111 124566677777766555544
No 67
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=26.71 E-value=1.6e+02 Score=20.38 Aligned_cols=108 Identities=12% Similarity=0.097 Sum_probs=54.3
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEec
Q 039430 10 VSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTR 89 (308)
Q Consensus 10 vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR 89 (308)
+.........++.++++.+..-....+.++....+.+. .--++|+|---.. ...++ +...+........||+.|-
T Consensus 13 vdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~---~~dlvi~d~~l~~-~~g~~-~~~~l~~~~~~~~ii~~s~ 87 (137)
T 3hdg_A 13 VEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLH---APDVIITDIRMPK-LGGLE-MLDRIKAGGAKPYVIVISA 87 (137)
T ss_dssp ECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHH---CCSEEEECSSCSS-SCHHH-HHHHHHHTTCCCEEEECCC
T ss_pred EeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhcc---CCCEEEEeCCCCC-CCHHH-HHHHHHhcCCCCcEEEEec
Confidence 45555667777888876332222334556665555543 3347888743222 12233 3333333345666776665
Q ss_pred chH--H-HhhhccCCCCceeecCCCCchhhHhHhhhhh
Q 039430 90 SRK--V-ASIMGTKGGSTGYNLQGLPFEDCLSLFMKCA 124 (308)
Q Consensus 90 ~~~--v-a~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 124 (308)
..+ . ...... +..-|-.++++.++-...+.+..
T Consensus 88 ~~~~~~~~~~~~~--g~~~~l~kP~~~~~l~~~i~~~~ 123 (137)
T 3hdg_A 88 FSEMKYFIKAIEL--GVHLFLPKPIEPGRLMETLEDFR 123 (137)
T ss_dssp CCCHHHHHHHHHH--CCSEECCSSCCHHHHHHHHHHHH
T ss_pred CcChHHHHHHHhC--CcceeEcCCCCHHHHHHHHHHHH
Confidence 432 1 111111 11346667777776655554443
No 68
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=25.89 E-value=1.6e+02 Score=20.59 Aligned_cols=105 Identities=14% Similarity=0.053 Sum_probs=51.5
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEec
Q 039430 10 VSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTR 89 (308)
Q Consensus 10 vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR 89 (308)
+.........++.+++..+-.-....+..+....+. ..+--++|+|- - .+...++ +...+.....+..||+.|.
T Consensus 10 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~---~~~~dlvi~d~-~-~~~~g~~-~~~~l~~~~~~~pii~ls~ 83 (142)
T 2qxy_A 10 VDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLR---REKIDLVFVDV-F-EGEESLN-LIRRIREEFPDTKVAVLSA 83 (142)
T ss_dssp ECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHT---TSCCSEEEEEC-T-TTHHHHH-HHHHHHHHCTTCEEEEEES
T ss_pred EeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHh---ccCCCEEEEeC-C-CCCcHHH-HHHHHHHHCCCCCEEEEEC
Confidence 456666677778887765322222233443333332 23456888886 3 2323332 3333333234566666654
Q ss_pred chHH---Hh--hhccCCCCceeecCCCCchhhHhHhhhhh
Q 039430 90 SRKV---AS--IMGTKGGSTGYNLQGLPFEDCLSLFMKCA 124 (308)
Q Consensus 90 ~~~v---a~--~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a 124 (308)
..+. .. ..+. .-|-.++++.++-...+.+..
T Consensus 84 ~~~~~~~~~~~~~g~----~~~l~kP~~~~~l~~~i~~~~ 119 (142)
T 2qxy_A 84 YVDKDLIINSVKAGA----VDYILKPFRLDYLLERVKKII 119 (142)
T ss_dssp CCCHHHHHHHHHHTC----SCEEESSCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCc----ceeEeCCCCHHHHHHHHHHHH
Confidence 4222 11 2222 345566777776655555444
No 69
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=25.51 E-value=2.6e+02 Score=25.40 Aligned_cols=107 Identities=7% Similarity=0.068 Sum_probs=56.8
Q ss_pred HHHHHHHHcCCceEEEEEecCCCCCh--------------HHHHHHHHhhcC--CCCCcEEEEEecchHHHhh--hccCC
Q 039430 40 LQKVLRDSFNGKRYLLVMDYVWNEDL--------------EAWRKFKSLLLG--GANGSKILVTTRSRKVASI--MGTKG 101 (308)
Q Consensus 40 ~~~~l~~~L~~kr~LlVLDdv~~~~~--------------~~~~~l~~~l~~--~~~gs~IlvTTR~~~va~~--~~~~~ 101 (308)
+...+.........+|+||++..-.. ....++...+.. ...+..||.||...+.... .....
T Consensus 97 ~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gR 176 (476)
T 2ce7_A 97 VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGR 176 (476)
T ss_dssp HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTS
T ss_pred HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCc
Confidence 33444445556789999999954210 122333333321 2345567777766554322 11111
Q ss_pred CCceeecCCCCchhhHhHhhhhhcccCCCCCchHHHHHHHHHHHcCCCh
Q 039430 102 GSTGYNLQGLPFEDCLSLFMKCACKEERDKHPNLIKIAKEIVKKCGGIL 150 (308)
Q Consensus 102 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~l~~~~~~I~~~c~glP 150 (308)
-...+.+...+.++-.+++..++.......... ...|++.+.|..
T Consensus 177 Fd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 177 FDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp SCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred ceeEeecCCCCHHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCc
Confidence 124778888888887788876653322111111 244777787766
No 70
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=24.92 E-value=1.6e+02 Score=20.48 Aligned_cols=116 Identities=16% Similarity=0.090 Sum_probs=60.6
Q ss_pred eCCCCCHHHHHHHHHHHhcC--CCCCCCCHHHHHHHHHHHcC--CceEEEEEecCCCCChHHHHHHHHhhcC----CCCC
Q 039430 10 VSVDFGERQIMTKIINSITG--ENQSNLDPDRLQKVLRDSFN--GKRYLLVMDYVWNEDLEAWRKFKSLLLG----GANG 81 (308)
Q Consensus 10 vs~~~~~~~ll~~il~~l~~--~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~~~~~~l~~~l~~----~~~g 81 (308)
|.........+..+++..+. .-....+.++....+.+... ..--++|+|---.. .+.++.+ ..+.. ....
T Consensus 15 vdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~-~~g~~~~-~~l~~~~~~~~~~ 92 (146)
T 3ilh_A 15 IDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPG-INGWELI-DLFKQHFQPMKNK 92 (146)
T ss_dssp ECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSS-SCHHHHH-HHHHHHCGGGTTT
T ss_pred EeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCC-CCHHHHH-HHHHHhhhhccCC
Confidence 55556667788888887654 22234466666666655332 23357777743221 1223222 22222 3345
Q ss_pred cEEEEEecch--HHHhhhccCCCCceeecCCCCchhhHhHhhhhhccc
Q 039430 82 SKILVTTRSR--KVASIMGTKGGSTGYNLQGLPFEDCLSLFMKCACKE 127 (308)
Q Consensus 82 s~IlvTTR~~--~va~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~ 127 (308)
..||+.|-.. .........++..-|-.++++.++-...+.+...+.
T Consensus 93 ~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~ 140 (146)
T 3ilh_A 93 SIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEG 140 (146)
T ss_dssp CEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC-
T ss_pred CeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhc
Confidence 5566555432 222221111112557888999988888887776443
No 71
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=21.58 E-value=3.5e+02 Score=22.48 Aligned_cols=73 Identities=12% Similarity=0.035 Sum_probs=42.3
Q ss_pred EEEEEecCCCCChHHHHHHHHhhcCC-----------CCCcEEEEEecchH------HHhhhccCCCCceeecCCCCchh
Q 039430 53 YLLVMDYVWNEDLEAWRKFKSLLLGG-----------ANGSKILVTTRSRK------VASIMGTKGGSTGYNLQGLPFED 115 (308)
Q Consensus 53 ~LlVLDdv~~~~~~~~~~l~~~l~~~-----------~~gs~IlvTTR~~~------va~~~~~~~~~~~~~l~~L~~~e 115 (308)
.+|++|++..........+...+... .....|+.|+.... +....-... ...+.+..++.++
T Consensus 111 ~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf-~~~i~i~~p~~~~ 189 (331)
T 2r44_A 111 NFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRF-MMKIHLTYLDKES 189 (331)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTS-SEEEECCCCCHHH
T ss_pred cEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHhhe-eEEEEcCCCCHHH
Confidence 48999999876655555565555421 23445555554211 111111110 1358899999999
Q ss_pred hHhHhhhhhcc
Q 039430 116 CLSLFMKCACK 126 (308)
Q Consensus 116 a~~Lf~~~a~~ 126 (308)
-.+++.+.+..
T Consensus 190 ~~~il~~~~~~ 200 (331)
T 2r44_A 190 ELEVMRRVSNM 200 (331)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHhcccc
Confidence 88888877643
No 72
>3v2d_F 50S ribosomal protein L4; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_F 2hgj_F 2hgu_F 2j03_F 2jl6_F 2jl8_F 2v47_F 2v49_F 2wdi_F 2wdj_F 2wdl_F 2wdn_F 2wh2_F 2wh4_F 2wrj_F 2wrl_F 2wro_F 2wrr_F 2x9s_F 2x9u_F ...
Probab=21.58 E-value=2e+02 Score=22.94 Aligned_cols=62 Identities=16% Similarity=0.064 Sum_probs=34.2
Q ss_pred EEEEEecCCC--CChHHHHHHHHhhcCCCCCcEEEEEecchHHHhhhccCCCCceeecCCCCchh
Q 039430 53 YLLVMDYVWN--EDLEAWRKFKSLLLGGANGSKILVTTRSRKVASIMGTKGGSTGYNLQGLPFED 115 (308)
Q Consensus 53 ~LlVLDdv~~--~~~~~~~~l~~~l~~~~~gs~IlvTTR~~~va~~~~~~~~~~~~~l~~L~~~e 115 (308)
-|+|+||+.- ........+...+......+..||+. ++.+......-++..+.....|+..+
T Consensus 122 ~l~Vvd~~~~~~~KTK~~~~~L~~lg~~~~~~~LiV~~-~~~~~~a~RNip~v~v~~~~~lnv~d 185 (210)
T 3v2d_F 122 KLLLVEAFAGVNGKTKEFLAWAKEAGLDGSESVLLVTG-NELVRRAARNLPWVVTLAPEGLNVYD 185 (210)
T ss_dssp CEEEESCCTTCSSCHHHHHHHHHHTTCCSSSCEEEECS-CHHHHHHHTTCTTEEEECGGGCCHHH
T ss_pred CEEEecccccCCccHHHHHHHHHHcCCCCCCceEEEeC-ChhHHHHHhCcCCceEEeeCCccHHH
Confidence 4788999752 22233334444443322345677777 77777666555444556666665443
No 73
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=21.39 E-value=18 Score=28.28 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=18.6
Q ss_pred EEEEecCCCCChHHHHH--HHH-hhcCC-CCCcEEEEEecc
Q 039430 54 LLVMDYVWNEDLEAWRK--FKS-LLLGG-ANGSKILVTTRS 90 (308)
Q Consensus 54 LlVLDdv~~~~~~~~~~--l~~-~l~~~-~~gs~IlvTTR~ 90 (308)
+|||||++......|.+ +.. .+... ..+.++|+||..
T Consensus 118 ~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 118 VLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp EEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 99999996643222221 221 22111 234568888874
No 74
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=20.93 E-value=1.5e+02 Score=20.38 Aligned_cols=111 Identities=5% Similarity=-0.057 Sum_probs=50.7
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEec
Q 039430 10 VSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTR 89 (308)
Q Consensus 10 vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR 89 (308)
+.........++.+++..+..-....+.++....+.+. .+--++|+|---......++.+ ..+.....+..||+.|.
T Consensus 11 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~~dlvi~d~~l~~~~~g~~~~-~~l~~~~~~~~ii~~s~ 87 (132)
T 2rdm_A 11 ADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG--AAIDGVVTDIRFCQPPDGWQVA-RVAREIDPNMPIVYISG 87 (132)
T ss_dssp ECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT--CCCCEEEEESCCSSSSCHHHHH-HHHHHHCTTCCEEEEES
T ss_pred EcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC--CCCCEEEEeeeCCCCCCHHHHH-HHHHhcCCCCCEEEEeC
Confidence 45555667777888876543222233444444444321 1445777874322101223222 22222223455555554
Q ss_pred chHHH-hhhccCCCCceeecCCCCchhhHhHhhhhhc
Q 039430 90 SRKVA-SIMGTKGGSTGYNLQGLPFEDCLSLFMKCAC 125 (308)
Q Consensus 90 ~~~va-~~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~ 125 (308)
..+.. ...+.. . .-|-.++++.++-...+.+...
T Consensus 88 ~~~~~~~~~~~~-~-~~~l~kP~~~~~l~~~i~~~~~ 122 (132)
T 2rdm_A 88 HAALEWASNGVP-D-SIILEKPFTSAQLITAVSQLLN 122 (132)
T ss_dssp SCCTTHHHHSCT-T-CEEEESSCCHHHHHHHHHHHHH
T ss_pred CccHHHHHhhcC-C-cceEeCCCCHHHHHHHHHHHHh
Confidence 32211 111111 0 1366677777776666655543
No 75
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=20.21 E-value=2.1e+02 Score=19.32 Aligned_cols=105 Identities=10% Similarity=0.090 Sum_probs=50.2
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHhhcCCCCCcEEEEEec
Q 039430 10 VSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLGGANGSKILVTTR 89 (308)
Q Consensus 10 vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~gs~IlvTTR 89 (308)
|.........++.++++.+-.-....+.++..+.+. ..+-=++++|---. +.+.++-+ ..+.....--.|++|+.
T Consensus 8 vdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~---~~~~dlii~D~~~p-~~~g~~~~-~~lr~~~~~~ii~~t~~ 82 (120)
T 3f6p_A 8 VDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVE---ELQPDLILLDIMLP-NKDGVEVC-REVRKKYDMPIIMLTAK 82 (120)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH---TTCCSEEEEETTST-TTHHHHHH-HHHHTTCCSCEEEEEES
T ss_pred EECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHh---hCCCCEEEEeCCCC-CCCHHHHH-HHHHhcCCCCEEEEECC
Confidence 556666778888888775432222334444444333 23445888874432 22334333 33333322234455554
Q ss_pred chHHH--hhhccCCCCceeecCCCCchhhHhHhh
Q 039430 90 SRKVA--SIMGTKGGSTGYNLQGLPFEDCLSLFM 121 (308)
Q Consensus 90 ~~~va--~~~~~~~~~~~~~l~~L~~~ea~~Lf~ 121 (308)
..... ..... +..-|-.+|.+.++-...+.
T Consensus 83 ~~~~~~~~~~~~--ga~~~l~KP~~~~~l~~~i~ 114 (120)
T 3f6p_A 83 DSEIDKVIGLEI--GADDYVTKPFSTRELLARVK 114 (120)
T ss_dssp SCHHHHHHHHHT--TCCEEEEESCCHHHHHHHHH
T ss_pred CChHHHHHHHhC--CcceeEcCCCCHHHHHHHHH
Confidence 43321 11111 12456667777766554443
No 76
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=20.08 E-value=2.2e+02 Score=19.65 Aligned_cols=110 Identities=5% Similarity=-0.018 Sum_probs=56.5
Q ss_pred eCCCCCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHcCCceEEEEEecCCCCChHHHHHHHHhhcC--CCCCcEEEEE
Q 039430 10 VSVDFGERQIMTKIINSITGENQSNLDPDRLQKVLRDSFNGKRYLLVMDYVWNEDLEAWRKFKSLLLG--GANGSKILVT 87 (308)
Q Consensus 10 vs~~~~~~~ll~~il~~l~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~--~~~gs~IlvT 87 (308)
+.........++.+++..+..-....+.++..+.+.+ .+-=++|+|---.. .+.++ +...+.. ......||+.
T Consensus 12 vdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~---~~~dlvi~d~~l~~-~~g~~-~~~~l~~~~~~~~~~ii~~ 86 (140)
T 3grc_A 12 CEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVAR---RPYAAMTVDLNLPD-QDGVS-LIRALRRDSRTRDLAIVVV 86 (140)
T ss_dssp ECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHH---SCCSEEEECSCCSS-SCHHH-HHHHHHTSGGGTTCEEEEE
T ss_pred EcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHh---CCCCEEEEeCCCCC-CCHHH-HHHHHHhCcccCCCCEEEE
Confidence 5666667788888888754332233445555554433 23347888743221 12233 3333333 3355677777
Q ss_pred ecchHHHhhh--ccCCCCceeecCCCCchhhHhHhhhhh
Q 039430 88 TRSRKVASIM--GTKGGSTGYNLQGLPFEDCLSLFMKCA 124 (308)
Q Consensus 88 TR~~~va~~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~a 124 (308)
|-..+..... ....+..-|-.++++.++-...+.+.+
T Consensus 87 s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l 125 (140)
T 3grc_A 87 SANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAI 125 (140)
T ss_dssp CTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHH
T ss_pred ecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHH
Confidence 7654432221 111122456777777776655554443
Done!