BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039432
(598 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1
SV=1
Length = 578
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 75/164 (45%), Gaps = 13/164 (7%)
Query: 217 SLNCSSHINDLIAMKSEQLGVSELKDKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNL 276
SL S + L+ EQ+ V L K + L S P ++ + + Y+ +K
Sbjct: 18 SLLSSPARDFLVRNDGEQVKVDSLLGKKIGLYFSAAWCGPCQRFTPQLVEVYNELSSKV- 76
Query: 277 EESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNSAVVNLIKQEWNFKEE 336
++IV+V D +E +F + +PW +V +S + + + + +
Sbjct: 77 --GFEIVFVS-------GDEDEESFGDYFRKMPWLAV---PFTDSETRDRLDELFKVRGI 124
Query: 337 PIMVVLDSQGMVTNSNALDMVLIWGARGYPFSVTREIELWQEED 380
P +V++D G + N N + ++ +GA YPF+ + E+ ++ED
Sbjct: 125 PNLVMVDDHGKLVNENGVGVIRSYGADAYPFTPEKMKEIKEDED 168
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 75/175 (42%), Gaps = 28/175 (16%)
Query: 217 SLNCSSHINDLIAMKSEQLGVSELKDKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNL 276
SL S +N ++ ++ VS+L K +++ S P + + Y +N
Sbjct: 338 SLLVSGDLNYVLGKDGAKVLVSDLVGKTILMYFSAHWCPPCRAFTPKLVEVYKQIKERN- 396
Query: 277 EESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSV-----RQPQLLNSAVVNLIKQEW 331
E+++++++ +D ++ +F+ + +PW ++ R+ L + V I
Sbjct: 397 -EAFELIFIS-------SDRDQESFDEYYSQMPWLALPFGDPRKASLAKTFKVGGI---- 444
Query: 332 NFKEEPIMVVLDSQGMVTNSNALDMVLIWGARGYPFSVTR--EIELWQEE---DW 381
P++ L G A D+V+ GA YPF+ R EIE +E DW
Sbjct: 445 -----PMLAALGPTGQTVTKEARDLVVAHGADAYPFTEERLKEIEAKYDEIAKDW 494
>sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2
SV=1
Length = 392
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 294 TDVEERNFELFSCSLPWYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNSNA 353
TD + R F + ++PW ++ + + +N K P +V++ + +NA
Sbjct: 247 TDRDSREFNINMTNMPWLAIPYEDRTRQDLCRI----FNVKLIPALVIIGPEEKTVTTNA 302
Query: 354 LDMVLIWGARGYPFSVTREIEL 375
+MV ++G+R +PF+ +R +EL
Sbjct: 303 REMVSLYGSRSFPFTESRIVEL 324
>sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica
GN=Os01g0794400 PE=2 SV=1
Length = 394
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 69/157 (43%), Gaps = 20/157 (12%)
Query: 227 LIAMKSEQLGVSELKDKVVILLVSK---PELLPL-EKLFLLVHQTYDHPHNKNLEESYKI 282
LI+ ++ +SEL+ K++ L + P+ L HQ +H +++
Sbjct: 26 LISPTGNEVQISELEGKIIGLYFAANWYPKCEAFTPALTAAYHQLKEH------GAGFEV 79
Query: 283 VWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVL 342
++V D +FE F ++PW +V + + + + + P +VVL
Sbjct: 80 IFVS-------CDENRPSFERFHRAMPWPAV---PFGDIGCKKRLSERFQVEGIPRLVVL 129
Query: 343 DSQGMVTNSNALDMVLIWGARGYPFSVTREIELWQEE 379
G V +A+++V +G R +PF+ R EL +E
Sbjct: 130 APNGEVVQPDAVELVHRYGDRAFPFTSARVAELEADE 166
>sp|Q7XPE8|NRX3_ORYSJ Probable nucleoredoxin 3 OS=Oryza sativa subsp. japonica
GN=Os04g0608600 PE=2 SV=2
Length = 471
Score = 37.7 bits (86), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 7/81 (8%)
Query: 298 ERNFELFSCSL---PWYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNSNAL 354
+RN E F SL PW+++ + V + + + K P +++L G V ++
Sbjct: 249 DRNEEEFQASLSAMPWFAI----PYSDTTVQELSRIFTIKGIPTLLILGPDGKVFKTDGR 304
Query: 355 DMVLIWGARGYPFSVTREIEL 375
++ +GA +PF+ +R EL
Sbjct: 305 RIISKYGAMAFPFTESRAYEL 325
>sp|Q91YX0|THMS2_MOUSE Protein THEMIS2 OS=Mus musculus GN=Themis2 PE=1 SV=2
Length = 663
Score = 33.1 bits (74), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 64/139 (46%), Gaps = 24/139 (17%)
Query: 299 RNFELFSCSLPWYSV-RQPQLLNSAVVNL----IKQEWNFKEEPIMVVLDSQGM-VTNSN 352
++ L SLPW SV +PQ + A++++ +K + E V SQ +
Sbjct: 187 KDLTLSCPSLPWNSVILKPQYMLQAIMHMRSSIVKIPSTLEVEVEDVTASSQHIHFFKPL 246
Query: 353 ALDMVLIWGARGYPFSVTREIELWQEEDWTLPLMIDEIHPL-LNKWV---QEGRNICLYG 408
L VL A G PF +T EI L + E P+ L+ WV ++G+ +C+YG
Sbjct: 247 RLSEVL---AGGGPFPLTTEI-----------LEVPEGPPVFLSPWVSFLRKGQRLCIYG 292
Query: 409 SENKDWIIEFNAKMMEIRR 427
+ W + ++K ++ R
Sbjct: 293 PASPSWRVVASSKSRKVPR 311
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 215,927,869
Number of Sequences: 539616
Number of extensions: 8923544
Number of successful extensions: 20162
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 20156
Number of HSP's gapped (non-prelim): 11
length of query: 598
length of database: 191,569,459
effective HSP length: 123
effective length of query: 475
effective length of database: 125,196,691
effective search space: 59468428225
effective search space used: 59468428225
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 64 (29.3 bits)