Query 039432
Match_columns 598
No_of_seqs 137 out of 180
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 09:37:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14577 SEO_C: Sieve element 100.0 5.3E-92 1.1E-96 698.5 17.7 228 369-598 1-231 (235)
2 PF14576 SEO_N: Sieve element 100.0 4.5E-82 9.8E-87 643.6 12.1 213 16-228 1-228 (286)
3 KOG2501 Thioredoxin, nucleored 99.9 3.6E-25 7.7E-30 209.6 9.6 132 226-378 16-151 (157)
4 cd03009 TryX_like_TryX_NRX Try 99.8 5.3E-21 1.2E-25 172.0 11.3 130 225-367 1-131 (131)
5 cd03008 TryX_like_RdCVF Trypar 99.8 3.1E-20 6.8E-25 174.7 9.1 128 226-365 2-142 (146)
6 cd02964 TryX_like_family Trypa 99.7 1.8E-17 4E-22 150.2 11.3 122 233-367 8-132 (132)
7 PF13905 Thioredoxin_8: Thiore 99.5 5E-14 1.1E-18 119.7 9.1 92 242-348 1-95 (95)
8 cd03012 TlpA_like_DipZ_like Tl 98.7 5.4E-08 1.2E-12 87.6 8.5 107 231-351 12-121 (126)
9 cd02967 mauD Methylamine utili 98.7 7.2E-08 1.6E-12 84.2 8.1 103 230-352 8-112 (114)
10 cd02968 SCO SCO (an acronym fo 98.6 1.1E-07 2.4E-12 85.9 8.6 112 230-350 10-138 (142)
11 cd02966 TlpA_like_family TlpA- 98.6 1.9E-07 4E-12 78.7 8.1 106 230-351 7-113 (116)
12 PRK03147 thiol-disulfide oxido 98.4 7.2E-07 1.6E-11 83.4 7.5 105 230-351 49-154 (173)
13 PRK14018 trifunctional thiored 98.3 1.7E-06 3.7E-11 96.7 9.2 109 229-351 45-155 (521)
14 PF00578 AhpC-TSA: AhpC/TSA fa 98.3 2.7E-06 5.8E-11 74.9 8.6 103 230-350 13-123 (124)
15 PF08534 Redoxin: Redoxin; In 98.3 2.5E-06 5.3E-11 78.0 8.3 105 230-352 16-131 (146)
16 cd03010 TlpA_like_DsbE TlpA-li 98.3 2.9E-06 6.3E-11 75.9 7.9 98 233-351 16-116 (127)
17 cd02969 PRX_like1 Peroxiredoxi 98.2 3.3E-06 7.1E-11 79.9 8.2 109 230-351 12-125 (171)
18 cd03015 PRX_Typ2cys Peroxiredo 98.2 6.4E-06 1.4E-10 78.4 10.1 103 233-352 20-136 (173)
19 PLN02412 probable glutathione 98.2 6.6E-06 1.4E-10 78.5 9.9 117 230-352 17-147 (167)
20 cd00340 GSH_Peroxidase Glutath 98.2 1.9E-06 4E-11 80.4 5.9 116 230-351 10-138 (152)
21 cd02971 PRX_family Peroxiredox 98.1 1.7E-05 3.7E-10 71.4 10.2 105 230-351 10-125 (140)
22 cd03017 PRX_BCP Peroxiredoxin 98.1 5.2E-06 1.1E-10 74.9 6.6 104 230-351 11-125 (140)
23 TIGR02661 MauD methylamine deh 98.1 1.4E-05 3E-10 77.8 9.8 99 230-351 60-162 (189)
24 PTZ00256 glutathione peroxidas 98.1 2E-05 4.4E-10 76.2 10.9 116 230-351 28-163 (183)
25 cd03011 TlpA_like_ScsD_MtbDsbE 98.1 7.2E-06 1.6E-10 72.5 7.0 98 230-349 8-106 (123)
26 PRK15412 thiol:disulfide inter 98.1 8.4E-06 1.8E-10 78.8 7.3 100 232-351 57-158 (185)
27 KOG2501 Thioredoxin, nucleored 98.0 3.3E-06 7.1E-11 81.1 3.3 47 398-446 30-83 (157)
28 PRK09437 bcp thioredoxin-depen 98.0 1E-05 2.2E-10 75.0 6.2 104 230-351 18-135 (154)
29 TIGR00385 dsbE periplasmic pro 98.0 1.3E-05 2.8E-10 76.5 6.8 98 234-351 54-153 (173)
30 PLN02919 haloacid dehalogenase 98.0 3E-05 6.6E-10 93.3 11.2 105 231-350 408-517 (1057)
31 cd03018 PRX_AhpE_like Peroxire 98.0 2.1E-05 4.6E-10 71.8 7.8 106 230-351 15-129 (149)
32 PLN02399 phospholipid hydroper 98.0 4.7E-05 1E-09 77.6 10.6 117 230-351 87-216 (236)
33 TIGR02540 gpx7 putative glutat 97.9 7E-05 1.5E-09 69.8 10.2 113 230-351 10-135 (153)
34 PRK10382 alkyl hydroperoxide r 97.9 3.5E-05 7.5E-10 75.7 8.4 104 234-351 23-134 (187)
35 TIGR03137 AhpC peroxiredoxin. 97.9 3.2E-05 6.9E-10 75.2 7.5 102 234-352 23-135 (187)
36 cd03014 PRX_Atyp2cys Peroxired 97.9 4.9E-05 1.1E-09 69.4 7.9 105 230-352 14-126 (143)
37 PTZ00056 glutathione peroxidas 97.9 6.6E-05 1.4E-09 74.1 9.4 113 230-350 27-159 (199)
38 PRK00522 tpx lipid hydroperoxi 97.7 0.00031 6.6E-09 67.1 11.1 105 230-352 32-147 (167)
39 cd02970 PRX_like2 Peroxiredoxi 97.7 8.3E-05 1.8E-09 67.3 6.6 103 230-350 10-144 (149)
40 PRK13190 putative peroxiredoxi 97.6 0.00015 3.1E-09 71.7 7.2 100 234-350 19-131 (202)
41 cd02950 TxlA TRX-like protein 97.6 0.00019 4E-09 67.2 6.8 74 240-351 18-92 (142)
42 PTZ00253 tryparedoxin peroxida 97.5 0.00022 4.8E-09 69.9 7.5 108 231-350 25-141 (199)
43 PF02630 SCO1-SenC: SCO1/SenC; 97.4 0.00061 1.3E-08 65.8 9.0 111 229-350 39-169 (174)
44 PTZ00137 2-Cys peroxiredoxin; 97.4 0.00041 8.8E-09 71.8 7.9 102 234-352 89-204 (261)
45 TIGR02740 TraF-like TraF-like 97.4 0.00025 5.5E-09 73.4 6.1 87 234-351 158-245 (271)
46 TIGR02738 TrbB type-F conjugat 97.4 0.00039 8.5E-09 66.4 6.7 85 237-350 45-133 (153)
47 PRK13728 conjugal transfer pro 97.4 0.00044 9.6E-09 68.1 6.9 87 230-350 61-151 (181)
48 cd02955 SSP411 TRX domain, SSP 97.3 0.00031 6.7E-09 65.0 5.5 83 241-352 14-97 (124)
49 cd03016 PRX_1cys Peroxiredoxin 97.3 0.00066 1.4E-08 66.9 8.1 106 233-351 15-132 (203)
50 PRK15000 peroxidase; Provision 97.3 0.00076 1.6E-08 66.7 8.0 103 232-351 20-140 (200)
51 PF13098 Thioredoxin_2: Thiore 97.3 0.00032 6.9E-09 61.2 4.4 94 241-350 4-97 (112)
52 cd02953 DsbDgamma DsbD gamma f 97.1 0.0011 2.5E-08 57.4 6.6 74 241-349 10-87 (104)
53 TIGR01626 ytfJ_HI0045 conserve 97.1 0.0017 3.7E-08 64.1 7.6 102 234-351 51-162 (184)
54 PRK10606 btuE putative glutath 97.0 0.0065 1.4E-07 59.7 11.1 124 230-368 13-170 (183)
55 cd02985 TRX_CDSP32 TRX family, 96.9 0.0028 6.1E-08 55.6 7.2 71 240-349 13-84 (103)
56 PRK13599 putative peroxiredoxi 96.9 0.0019 4.1E-08 64.8 6.7 109 231-351 17-134 (215)
57 PRK13191 putative peroxiredoxi 96.9 0.0024 5.3E-08 64.0 7.1 102 233-351 23-139 (215)
58 cd02951 SoxW SoxW family; SoxW 96.9 0.0012 2.7E-08 59.2 4.5 83 241-350 12-100 (125)
59 PRK13189 peroxiredoxin; Provis 96.8 0.0034 7.4E-08 63.1 7.5 101 234-351 26-141 (222)
60 cd02956 ybbN ybbN protein fami 96.6 0.0049 1.1E-07 52.3 5.7 68 241-349 11-79 (96)
61 cd02959 ERp19 Endoplasmic reti 96.5 0.0032 6.9E-08 57.2 4.6 74 240-351 17-92 (117)
62 cd02999 PDI_a_ERp44_like PDIa 96.5 0.003 6.4E-08 55.5 4.2 68 238-345 14-82 (100)
63 cd02952 TRP14_like Human TRX-r 96.3 0.013 2.7E-07 54.2 7.0 81 240-353 19-108 (119)
64 PTZ00051 thioredoxin; Provisio 96.2 0.009 2E-07 50.8 5.4 67 241-349 17-84 (98)
65 cd02949 TRX_NTR TRX domain, no 96.2 0.017 3.6E-07 49.8 7.0 68 241-349 12-80 (97)
66 PRK10996 thioredoxin 2; Provis 96.1 0.015 3.3E-07 54.1 6.6 70 241-351 51-121 (139)
67 cd02948 TRX_NDPK TRX domain, T 95.9 0.029 6.3E-07 49.0 7.0 68 241-349 16-84 (102)
68 TIGR01126 pdi_dom protein disu 95.8 0.033 7.1E-07 47.0 6.8 70 241-348 12-82 (102)
69 cd02963 TRX_DnaJ TRX domain, D 95.7 0.027 5.8E-07 50.1 6.1 73 239-351 21-94 (111)
70 cd03005 PDI_a_ERp46 PDIa famil 95.6 0.016 3.5E-07 49.3 4.3 68 244-349 18-86 (102)
71 PF13905 Thioredoxin_8: Thiore 95.6 0.021 4.6E-07 48.3 5.0 53 401-453 1-57 (95)
72 COG1225 Bcp Peroxiredoxin [Pos 95.5 0.06 1.3E-06 52.2 8.2 103 230-350 18-134 (157)
73 COG1999 Uncharacterized protei 95.4 0.054 1.2E-06 54.2 8.0 113 228-350 53-185 (207)
74 cd02984 TRX_PICOT TRX domain, 95.3 0.037 8.1E-07 46.8 5.6 68 242-350 14-82 (97)
75 cd03002 PDI_a_MPD1_like PDI fa 95.3 0.045 9.9E-07 47.3 6.2 69 241-347 17-86 (109)
76 PRK09381 trxA thioredoxin; Pro 95.2 0.06 1.3E-06 46.9 6.6 68 242-350 21-89 (109)
77 cd03000 PDI_a_TMX3 PDIa family 95.0 0.033 7.1E-07 48.5 4.5 67 240-343 13-80 (104)
78 cd02960 AGR Anterior Gradient 94.8 0.022 4.9E-07 53.5 3.1 95 241-377 22-117 (130)
79 cd02993 PDI_a_APS_reductase PD 94.8 0.089 1.9E-06 46.4 6.7 70 241-347 20-90 (109)
80 cd02994 PDI_a_TMX PDIa family, 94.7 0.094 2E-06 45.0 6.4 68 240-348 15-83 (101)
81 TIGR01068 thioredoxin thioredo 94.7 0.1 2.2E-06 43.6 6.5 67 242-349 14-81 (101)
82 PHA02278 thioredoxin-like prot 94.6 0.12 2.6E-06 46.2 6.9 73 241-349 13-85 (103)
83 cd02998 PDI_a_ERp38 PDIa famil 94.3 0.078 1.7E-06 44.9 4.9 69 242-347 18-87 (105)
84 cd02996 PDI_a_ERp44 PDIa famil 94.1 0.084 1.8E-06 46.1 4.9 72 242-348 18-90 (108)
85 PTZ00062 glutaredoxin; Provisi 94.0 0.33 7.1E-06 48.9 9.5 126 243-440 18-153 (204)
86 cd03003 PDI_a_ERdj5_N PDIa fam 94.0 0.2 4.2E-06 43.2 6.9 68 240-348 16-84 (101)
87 TIGR01295 PedC_BrcD bacterioci 93.9 0.19 4.1E-06 46.1 7.1 78 242-350 23-104 (122)
88 cd03008 TryX_like_RdCVF Trypar 93.9 0.083 1.8E-06 50.4 4.8 51 400-450 24-84 (146)
89 cd02961 PDI_a_family Protein D 93.9 0.25 5.4E-06 40.7 7.2 68 241-346 14-82 (101)
90 PRK00293 dipZ thiol:disulfide 93.5 0.19 4.2E-06 57.4 7.7 74 241-350 473-549 (571)
91 cd02958 UAS UAS family; UAS is 93.4 0.37 8E-06 42.8 7.8 25 326-350 67-92 (114)
92 PTZ00102 disulphide isomerase; 93.4 0.16 3.5E-06 55.3 6.6 70 241-348 374-444 (477)
93 cd02997 PDI_a_PDIR PDIa family 92.9 0.27 5.8E-06 41.8 5.9 72 241-349 16-88 (104)
94 cd02975 PfPDO_like_N Pyrococcu 92.7 0.45 9.7E-06 42.8 7.4 64 242-345 22-85 (113)
95 TIGR02187 GlrX_arch Glutaredox 92.5 1.4 3.1E-05 43.7 11.3 47 399-446 132-179 (215)
96 cd03004 PDI_a_ERdj5_C PDIa fam 92.3 0.53 1.2E-05 40.5 7.0 68 241-348 18-86 (104)
97 cd02947 TRX_family TRX family; 92.2 0.55 1.2E-05 37.7 6.6 63 243-347 11-74 (93)
98 cd03001 PDI_a_P5 PDIa family, 92.2 0.52 1.1E-05 40.0 6.7 64 242-345 18-82 (103)
99 cd02954 DIM1 Dim1 family; Dim1 91.3 0.43 9.3E-06 44.0 5.6 71 241-351 13-83 (114)
100 cd03013 PRX5_like Peroxiredoxi 90.6 1.5 3.3E-05 41.6 8.9 103 232-351 18-136 (155)
101 PF00085 Thioredoxin: Thioredo 90.2 0.24 5.2E-06 41.7 2.7 68 241-348 16-84 (103)
102 PTZ00443 Thioredoxin domain-co 90.1 0.6 1.3E-05 47.6 5.9 67 242-349 52-119 (224)
103 cd02957 Phd_like Phosducin (Ph 90.1 1.2 2.5E-05 39.6 7.2 87 242-374 24-110 (113)
104 cd02992 PDI_a_QSOX PDIa family 89.7 1.1 2.3E-05 40.3 6.6 77 242-354 19-96 (114)
105 cd02962 TMX2 TMX2 family; comp 89.6 0.88 1.9E-05 43.7 6.4 30 241-271 46-76 (152)
106 TIGR00411 redox_disulf_1 small 89.2 1.4 3.1E-05 35.9 6.6 36 247-287 4-39 (82)
107 cd02989 Phd_like_TxnDC9 Phosdu 89.2 0.77 1.7E-05 41.3 5.4 69 241-350 21-89 (113)
108 COG0450 AhpC Peroxiredoxin [Po 87.5 1.6 3.4E-05 43.9 6.7 102 234-349 25-137 (194)
109 cd02965 HyaE HyaE family; HyaE 86.8 2.5 5.4E-05 38.9 7.1 69 242-350 27-97 (111)
110 PF00255 GSHPx: Glutathione pe 85.6 2.7 5.8E-05 38.5 6.6 67 230-301 9-78 (108)
111 KOG0907 Thioredoxin [Posttrans 85.4 1.9 4E-05 39.1 5.5 73 242-354 21-96 (106)
112 cd01659 TRX_superfamily Thiore 85.4 3.5 7.7E-05 29.5 6.2 61 247-345 2-63 (69)
113 cd03006 PDI_a_EFP1_N PDIa fami 85.2 1.7 3.7E-05 39.5 5.2 68 240-347 27-95 (113)
114 cd02987 Phd_like_Phd Phosducin 84.9 2.3 5E-05 41.5 6.4 87 242-375 83-170 (175)
115 smart00834 CxxC_CXXC_SSSS Puta 84.9 0.54 1.2E-05 34.6 1.5 31 564-595 10-40 (41)
116 cd02995 PDI_a_PDI_a'_C PDIa fa 84.8 2.1 4.6E-05 36.1 5.4 40 242-287 18-58 (104)
117 PTZ00102 disulphide isomerase; 84.2 1.2 2.6E-05 48.5 4.5 71 241-348 48-119 (477)
118 cd02964 TryX_like_family Trypa 84.1 2 4.4E-05 39.0 5.2 48 400-449 16-70 (132)
119 TIGR01130 ER_PDI_fam protein d 84.1 1.3 2.8E-05 47.6 4.6 68 241-345 17-85 (462)
120 cd02982 PDI_b'_family Protein 83.2 4.6 0.0001 34.3 6.8 64 242-344 12-77 (103)
121 cd03009 TryX_like_TryX_NRX Try 82.8 2.6 5.6E-05 37.9 5.3 50 400-449 17-71 (131)
122 smart00594 UAS UAS domain. 82.8 5.1 0.00011 36.4 7.3 22 325-346 76-97 (122)
123 TIGR01295 PedC_BrcD bacterioci 81.9 1.6 3.4E-05 40.1 3.7 43 397-441 19-63 (122)
124 TIGR01130 ER_PDI_fam protein d 81.9 3.5 7.6E-05 44.3 6.9 69 241-348 363-432 (462)
125 KOG2792 Putative cytochrome C 80.9 2.4 5.1E-05 44.6 4.8 62 226-289 123-186 (280)
126 PF09723 Zn-ribbon_8: Zinc rib 79.6 1.1 2.4E-05 34.1 1.6 32 564-596 10-42 (42)
127 cd03026 AhpF_NTD_C TRX-GRX-lik 79.5 9.3 0.0002 33.2 7.5 26 237-262 7-32 (89)
128 TIGR00424 APS_reduc 5'-adenyly 77.5 5.1 0.00011 45.2 6.6 68 241-345 370-438 (463)
129 PF14595 Thioredoxin_9: Thiore 77.1 3.8 8.1E-05 38.3 4.6 77 236-350 35-112 (129)
130 TIGR00412 redox_disulf_2 small 71.7 16 0.00036 30.4 6.7 17 330-349 44-60 (76)
131 PF13728 TraF: F plasmid trans 70.1 9.2 0.0002 38.7 5.7 87 234-351 112-199 (215)
132 PRK11657 dsbG disulfide isomer 69.1 45 0.00097 34.4 10.6 100 241-348 116-232 (251)
133 PF13899 Thioredoxin_7: Thiore 68.9 3.3 7.2E-05 34.7 2.0 20 241-260 16-35 (82)
134 cd02955 SSP411 TRX domain, SSP 68.9 11 0.00024 34.9 5.6 44 398-441 12-60 (124)
135 KOG0852 Alkyl hydroperoxide re 67.8 5.6 0.00012 39.8 3.5 123 234-375 25-170 (196)
136 cd03010 TlpA_like_DsbE TlpA-li 67.4 11 0.00023 33.6 5.1 47 400-450 24-74 (127)
137 cd03065 PDI_b_Calsequestrin_N 67.0 10 0.00022 35.1 4.9 24 326-350 78-101 (120)
138 PLN02309 5'-adenylylsulfate re 66.9 15 0.00032 41.6 7.0 69 241-346 364-433 (457)
139 TIGR02605 CxxC_CxxC_SSSS putat 66.1 4.2 9.2E-05 31.7 1.9 31 564-595 10-41 (52)
140 cd02986 DLP Dim1 family, Dim1- 64.8 17 0.00037 33.8 5.9 40 241-287 13-52 (114)
141 PF08209 Sgf11: Sgf11 (transcr 64.5 3.4 7.5E-05 30.5 1.0 13 580-592 3-15 (33)
142 PF02591 DUF164: Putative zinc 62.1 4 8.6E-05 32.7 1.1 27 564-591 26-56 (56)
143 cd02950 TxlA TRX-like protein 61.9 17 0.00037 34.0 5.5 44 398-441 17-62 (142)
144 cd02953 DsbDgamma DsbD gamma f 61.7 20 0.00043 30.8 5.5 43 398-440 8-55 (104)
145 cd02967 mauD Methylamine utili 61.7 17 0.00037 31.4 5.1 52 400-452 20-73 (114)
146 TIGR00385 dsbE periplasmic pro 61.7 14 0.00031 35.3 5.0 48 399-448 61-109 (173)
147 PRK03147 thiol-disulfide oxido 60.9 23 0.00051 33.0 6.2 51 400-450 60-113 (173)
148 TIGR02180 GRX_euk Glutaredoxin 60.0 43 0.00092 27.2 7.0 59 247-341 2-60 (84)
149 cd02988 Phd_like_VIAF Phosduci 60.0 24 0.00051 35.1 6.3 85 242-375 102-187 (192)
150 PHA02125 thioredoxin-like prot 58.9 26 0.00056 29.0 5.5 15 326-340 37-51 (75)
151 PF00085 Thioredoxin: Thioredo 58.7 18 0.0004 30.1 4.7 47 398-444 13-62 (103)
152 PRK10996 thioredoxin 2; Provis 58.4 16 0.00035 33.9 4.7 44 397-440 48-93 (139)
153 TIGR01206 lysW lysine biosynth 57.8 8.5 0.00019 31.3 2.3 29 564-594 7-35 (54)
154 cd03020 DsbA_DsbC_DsbG DsbA fa 57.5 92 0.002 30.3 10.0 96 242-349 77-184 (197)
155 cd02949 TRX_NTR TRX domain, no 57.4 31 0.00066 29.5 5.9 45 399-443 11-57 (97)
156 PF13098 Thioredoxin_2: Thiore 56.6 16 0.00034 31.6 4.0 48 399-446 3-55 (112)
157 cd02947 TRX_family TRX family; 55.5 27 0.00057 27.8 4.9 43 398-441 7-51 (93)
158 PRK15412 thiol:disulfide inter 55.2 21 0.00045 34.6 5.0 50 400-451 67-117 (185)
159 cd02966 TlpA_like_family TlpA- 55.2 27 0.00058 28.9 5.1 54 400-453 18-75 (116)
160 TIGR02187 GlrX_arch Glutaredox 55.0 32 0.00069 34.2 6.4 24 239-262 130-153 (215)
161 KOG0910 Thioredoxin-like prote 54.3 26 0.00056 34.2 5.3 67 242-349 61-128 (150)
162 COG2143 Thioredoxin-related pr 53.6 13 0.00028 36.8 3.2 88 240-349 40-129 (182)
163 TIGR02661 MauD methylamine deh 53.5 23 0.00049 34.6 5.0 42 398-441 71-114 (189)
164 PF06110 DUF953: Eukaryotic pr 53.3 18 0.00038 33.8 3.9 81 241-353 18-107 (119)
165 COG3118 Thioredoxin domain-con 52.5 20 0.00044 38.5 4.7 90 234-363 35-132 (304)
166 cd02956 ybbN ybbN protein fami 49.9 32 0.0007 28.9 4.8 42 400-441 11-54 (96)
167 PLN00410 U5 snRNP protein, DIM 48.7 41 0.0009 32.2 5.7 70 241-349 22-91 (142)
168 cd03003 PDI_a_ERdj5_N PDIa fam 48.7 34 0.00073 29.3 4.8 45 398-442 15-61 (101)
169 cd02961 PDI_a_family Protein D 48.5 41 0.0009 27.3 5.1 43 398-440 12-58 (101)
170 cd02948 TRX_NDPK TRX domain, T 48.3 34 0.00073 29.7 4.8 43 398-440 14-59 (102)
171 cd03012 TlpA_like_DipZ_like Tl 47.6 38 0.00082 30.3 5.1 40 400-439 22-64 (126)
172 PF13408 Zn_ribbon_recom: Reco 47.3 8.6 0.00019 29.9 0.8 14 580-593 4-17 (58)
173 PF13899 Thioredoxin_7: Thiore 45.9 24 0.00052 29.5 3.3 47 398-444 14-65 (82)
174 PF13913 zf-C2HC_2: zinc-finge 44.0 10 0.00022 26.0 0.6 13 580-592 1-13 (25)
175 TIGR02739 TraF type-F conjugat 43.7 25 0.00055 36.8 3.8 89 234-354 142-232 (256)
176 COG0386 BtuE Glutathione perox 43.4 43 0.00092 33.1 4.9 53 230-287 13-65 (162)
177 TIGR01068 thioredoxin thioredo 42.6 36 0.00078 28.2 3.9 43 400-442 13-57 (101)
178 cd02954 DIM1 Dim1 family; Dim1 39.7 56 0.0012 30.2 5.0 45 400-444 13-59 (114)
179 cd02959 ERp19 Endoplasmic reti 38.7 39 0.00084 30.7 3.7 28 398-425 16-44 (117)
180 COG3024 Uncharacterized protei 38.2 14 0.0003 31.3 0.7 15 579-593 5-19 (65)
181 PHA02278 thioredoxin-like prot 37.7 44 0.00095 29.9 3.8 43 398-440 11-55 (103)
182 KOG1088 Uncharacterized conser 37.3 16 0.00035 34.3 1.0 14 578-591 95-108 (124)
183 PF00462 Glutaredoxin: Glutare 36.8 76 0.0016 24.7 4.7 33 404-440 1-34 (60)
184 cd03001 PDI_a_P5 PDIa family, 36.6 80 0.0017 26.5 5.2 42 400-441 17-60 (103)
185 PF14803 Nudix_N_2: Nudix N-te 36.3 23 0.0005 26.2 1.5 27 564-590 5-31 (34)
186 PRK00398 rpoP DNA-directed RNA 36.0 25 0.00054 27.0 1.7 25 564-592 8-32 (46)
187 KOG3425 Uncharacterized conser 35.8 52 0.0011 31.3 4.1 43 398-440 22-76 (128)
188 cd02951 SoxW SoxW family; SoxW 35.2 47 0.001 29.6 3.7 45 397-441 9-59 (125)
189 PTZ00051 thioredoxin; Provisio 35.0 60 0.0013 27.3 4.1 30 398-427 15-46 (98)
190 cd02968 SCO SCO (an acronym fo 34.6 66 0.0014 28.8 4.6 43 400-442 21-70 (142)
191 PRK13703 conjugal pilus assemb 34.4 34 0.00075 35.7 3.0 123 191-354 102-225 (248)
192 cd03011 TlpA_like_ScsD_MtbDsbE 33.8 54 0.0012 28.7 3.8 48 399-450 18-68 (123)
193 PF03190 Thioredox_DsbH: Prote 33.7 62 0.0013 31.9 4.5 74 241-350 36-117 (163)
194 cd02963 TRX_DnaJ TRX domain, D 33.2 67 0.0015 28.4 4.3 40 400-441 23-67 (111)
195 PF13453 zf-TFIIB: Transcripti 32.8 21 0.00045 26.9 0.8 12 583-594 1-12 (41)
196 PF11023 DUF2614: Protein of u 32.6 21 0.00045 33.3 1.0 10 581-590 69-78 (114)
197 cd02975 PfPDO_like_N Pyrococcu 32.5 91 0.002 27.9 5.1 45 398-443 19-65 (113)
198 TIGR01126 pdi_dom protein disu 31.8 59 0.0013 27.0 3.6 41 398-440 10-56 (102)
199 cd03004 PDI_a_ERdj5_C PDIa fam 31.7 82 0.0018 26.9 4.5 41 400-440 18-60 (104)
200 PF13248 zf-ribbon_3: zinc-rib 31.7 19 0.00042 24.7 0.5 11 582-592 3-13 (26)
201 cd03002 PDI_a_MPD1_like PDI fa 31.1 68 0.0015 27.4 3.9 42 400-441 17-60 (109)
202 TIGR02098 MJ0042_CXXC MJ0042 f 31.0 22 0.00048 25.9 0.7 30 564-593 7-37 (38)
203 cd03000 PDI_a_TMX3 PDIa family 30.9 66 0.0014 27.7 3.8 43 398-440 12-59 (104)
204 cd02972 DsbA_family DsbA famil 30.5 2E+02 0.0044 23.0 6.5 19 325-343 73-91 (98)
205 TIGR00411 redox_disulf_1 small 30.4 1.3E+02 0.0029 24.1 5.4 44 403-446 2-46 (82)
206 COG1579 Zn-ribbon protein, pos 30.4 18 0.00039 37.6 0.2 25 566-591 203-231 (239)
207 PF01396 zf-C4_Topoisom: Topoi 30.2 22 0.00047 26.8 0.6 12 582-593 2-13 (39)
208 cd02984 TRX_PICOT TRX domain, 30.2 1.4E+02 0.0031 24.8 5.7 40 401-440 14-55 (97)
209 PF04423 Rad50_zn_hook: Rad50 29.8 21 0.00046 28.2 0.5 10 583-592 22-31 (54)
210 PF09237 GAGA: GAGA factor; I 29.5 22 0.00047 29.1 0.5 14 580-593 23-36 (54)
211 PF13778 DUF4174: Domain of un 29.3 3E+02 0.0065 25.2 8.0 91 236-351 2-94 (118)
212 PRK09381 trxA thioredoxin; Pro 29.0 93 0.002 26.8 4.4 42 400-441 20-63 (109)
213 KOG1651 Glutathione peroxidase 28.9 52 0.0011 32.7 3.1 53 230-287 22-75 (171)
214 PF06073 DUF934: Bacterial pro 28.9 1.7E+02 0.0036 27.2 6.1 81 283-376 2-85 (110)
215 cd02999 PDI_a_ERp44_like PDIa 28.6 82 0.0018 27.5 4.0 39 399-440 16-58 (100)
216 cd02985 TRX_CDSP32 TRX family, 28.5 75 0.0016 27.7 3.7 40 400-440 14-55 (103)
217 PF14369 zf-RING_3: zinc-finge 27.8 41 0.0009 24.9 1.7 24 563-589 6-29 (35)
218 PF13717 zinc_ribbon_4: zinc-r 27.4 30 0.00065 25.7 0.9 25 564-590 7-34 (36)
219 smart00659 RPOLCX RNA polymera 27.0 42 0.00092 26.1 1.7 22 564-590 7-28 (44)
220 TIGR02740 TraF-like TraF-like 26.2 68 0.0015 33.6 3.6 40 400-441 165-206 (271)
221 PF10013 DUF2256: Uncharacteri 26.0 29 0.00064 27.1 0.6 11 582-592 9-19 (42)
222 PRK10877 protein disulfide iso 25.8 3.2E+02 0.007 27.8 8.3 95 241-349 106-214 (232)
223 PF03884 DUF329: Domain of unk 25.5 34 0.00074 28.3 1.0 14 580-593 1-14 (57)
224 cd02970 PRX_like2 Peroxiredoxi 25.3 1.9E+02 0.0041 25.8 5.9 62 400-465 23-89 (149)
225 cd02996 PDI_a_ERp44 PDIa famil 25.2 1.1E+02 0.0023 26.5 4.1 45 398-442 15-67 (108)
226 PF14026 DUF4242: Protein of u 24.9 1E+02 0.0022 26.5 3.8 34 395-435 38-74 (77)
227 cd03005 PDI_a_ERp46 PDIa famil 24.7 96 0.0021 26.0 3.6 42 398-440 14-60 (102)
228 PF13240 zinc_ribbon_2: zinc-r 23.8 34 0.00073 23.1 0.5 8 583-590 15-22 (23)
229 TIGR01031 rpmF_bact ribosomal 23.5 44 0.00095 27.2 1.2 14 578-591 23-36 (55)
230 cd02998 PDI_a_ERp38 PDIa famil 23.1 1.2E+02 0.0025 25.4 3.9 42 400-441 17-62 (105)
231 cd02960 AGR Anterior Gradient 22.8 1.2E+02 0.0027 28.6 4.3 25 398-422 20-45 (130)
232 PRK02935 hypothetical protein; 22.7 38 0.00082 31.4 0.8 12 581-592 70-81 (110)
233 COG1088 RfbB dTDP-D-glucose 4, 22.4 76 0.0017 34.6 3.1 163 256-458 94-267 (340)
234 cd02989 Phd_like_TxnDC9 Phosdu 22.3 1.3E+02 0.0028 27.0 4.2 45 398-443 19-65 (113)
235 TIGR03143 AhpF_homolog putativ 22.2 5.8E+02 0.013 29.2 10.3 158 258-440 351-518 (555)
236 PF07754 DUF1610: Domain of un 22.1 40 0.00086 23.4 0.6 10 580-589 15-24 (24)
237 cd02995 PDI_a_PDI_a'_C PDIa fa 21.1 1.8E+02 0.004 24.2 4.7 41 400-440 17-61 (104)
238 COG0526 TrxA Thiol-disulfide i 21.0 1.5E+02 0.0032 23.7 3.9 46 236-287 26-72 (127)
239 cd02993 PDI_a_APS_reductase PD 20.9 1.4E+02 0.0031 26.0 4.1 42 399-440 19-63 (109)
240 smart00661 RPOL9 RNA polymeras 20.4 95 0.0021 23.8 2.5 15 580-594 19-33 (52)
241 PF07191 zinc-ribbons_6: zinc- 20.2 47 0.001 28.6 0.8 18 577-594 26-43 (70)
242 PF08271 TF_Zn_Ribbon: TFIIB z 20.1 57 0.0012 24.7 1.2 15 580-594 18-32 (43)
No 1
>PF14577 SEO_C: Sieve element occlusion C-terminus
Probab=100.00 E-value=5.3e-92 Score=698.53 Aligned_cols=228 Identities=35% Similarity=0.693 Sum_probs=225.2
Q ss_pred chhHHhhhcccccccccccccCCcccccccccCcEEEEEcCCChhHHHHHHHHHHHH-HhcCceeeEEEeccCCchhhHH
Q 039432 369 VTREIELWQEEDWTLPLMIDEIHPLLNKWVQEGRNICLYGSENKDWIIEFNAKMMEI-RRLGLQVDMVFVGVKNPSEQVR 447 (598)
Q Consensus 369 ~~r~e~L~~~e~w~lelLvd~id~~I~~~i~egK~I~LYgg~d~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~~~e~v~ 447 (598)
++|+++||++|+|+|++|+|++||.|.+||+||||||||||+|++|||+||.++++| +++++++||+||||+||||+||
T Consensus 1 ~sree~Lw~e~~W~l~lL~d~Idp~i~~wi~e~kyI~iYGG~D~eWIq~Ft~~a~~va~~a~i~LEm~yvGKsn~~e~v~ 80 (235)
T PF14577_consen 1 KSREESLWKEETWFLELLVDGIDPTILNWIKEGKYIFIYGGEDMEWIQEFTKAARKVAKAADIQLEMVYVGKSNPREQVR 80 (235)
T ss_pred CchHHHhhhhhhHHHHHHHcccCHhHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHHHHhcCCceEEEEecCCChHHHHH
Confidence 479999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHhhhhccccccccC-CcchhhHHHHHHHHHHHHHHhcCCCCCCChhHHHHHHHhcCCCCCCcEEEEecCCccccccccc
Q 039432 448 NVLATINQEMHTTLL-SFTEIQFFWYRLESIRKSKLRLGKVADTDHTLREVSALLNTEDSDNGWAVFGKGWPPDIVRLQG 526 (598)
Q Consensus 448 ~~~~~i~~e~ls~~~-d~~~v~~FW~rlESm~~sK~q~g~~~~~d~i~~ei~~lLs~~~~~~GWavlskGs~~~~~~g~G 526 (598)
+++++|+.|||||+| |||+|||||+|||||++||+|+|+++++|++||||++||||||+++|||||||||+ +|++|||
T Consensus 81 ~~~~~i~~e~ls~~~~d~t~v~~FW~rlESm~~SK~qlg~~~~~D~i~qEV~~LLs~d~~~~GWavlskGs~-v~~~ghG 159 (235)
T PF14577_consen 81 KIIATITSEKLSHSWEDPTMVWFFWTRLESMLFSKIQLGKTDENDPIMQEVKKLLSYDQDEQGWAVLSKGSN-VMVKGHG 159 (235)
T ss_pred HHhhhhhhcccccccCCcchhHHHHHHHHHHHHHHHhcCCCccccHHHHHHHHHhCCCCCCCceEEEecCCc-eeeeccc
Confidence 999999999999999 99999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhHHHHhhccCCccccccccchHHHHHHHhhccC-CCCCCcccccccCCCCCccceeecCCCCccceeeeecC
Q 039432 527 MQLMECLNLFPDWGGNVARRGLVGAIRNALGLAV-SSEPCSHPNVLHYAEGSREGIVVCEKCKRLLKMFVVYE 598 (598)
Q Consensus 527 ~~~l~~l~~f~~Wk~~v~~kGF~~Af~~y~~~~~-~~~~C~~~~~~p~~~g~ip~~i~CpeC~R~ME~~v~Y~ 598 (598)
++|++||++|+.||++|+++||++||+|||++++ +|||||| +++|+++|+||++|+||||||+||+||+||
T Consensus 160 ~~~l~tl~~f~~Wk~~v~~~GF~~Af~e~~~~~~~~~~~C~~-~~~p~~~g~ipe~i~CpeC~R~MEk~v~Yk 231 (235)
T PF14577_consen 160 ETMLQTLAEFDEWKENVPEKGFDPAFKEYYEKLHDTPHHCNR-LEFPNSAGRIPETIVCPECGRPMEKFVMYK 231 (235)
T ss_pred ccHHHHHHHhhHhhccCcccCHHHHHHHHHhccCCCCCCCee-EeccCcccCCCceeECCCCCCchhhceeee
Confidence 9999999999999999999999999999999988 5999999 999999999999999999999999999997
No 2
>PF14576 SEO_N: Sieve element occlusion N-terminus
Probab=100.00 E-value=4.5e-82 Score=643.59 Aligned_cols=213 Identities=46% Similarity=0.699 Sum_probs=197.7
Q ss_pred CCCcHHHHHHHhhhcCCCCCcCChHHHHHHHHHHHhhhcccccCcC-cc--cchhhhhcccCccccccccCccccccccc
Q 039432 16 SMQDDVLIKELFLSHDPDGRRLDSEQVLRAMENIMCYATASEVPVS-DE--YGDAFAMNNASNIEVVGSQEPLGHTICKI 92 (598)
Q Consensus 16 ~sdd~~i~~~I~~TH~~d~~~~Dv~~L~~~venIl~~a~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~l~~~i~~i 92 (598)
+|||++||||||+||+||||+|||++||++||||++||+++++... .. .+....+++..++++.++|||++++|+||
T Consensus 1 ~~~D~~ilk~I~~TH~pd~~~~Dv~~Ll~~venIl~~at~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~l~~~i~rI 80 (286)
T PF14576_consen 1 TSDDDQILKQIYATHVPDGRKFDVEPLLHLVENILKRATPIVGDSIDTVVQKHPEALEDKDYQIEPIASFEPLFYTIKRI 80 (286)
T ss_pred CCcHHHHHHHHHHhcCCCCCcccHHHHHHHHHHHHHHhhhhhcchhhhhhhcchhhhhhhhcccchHhhcCchhHHHHHH
Confidence 4688889999999999999999999999999999999998773211 11 11222335777888999999999999999
Q ss_pred cc---------cchhHhHHHHHHhhcCCcchhHHHHHHHHHHHhhhhhhhhhhcCCCChHHHHHHHHcCCCccc---ccc
Q 039432 93 AR---------EGIYTRTMIVFDLVGNYRWDAKVVLVLAAFATSYGEFWLIMQLYPRNLLAVSVAMLKQLPCNV---SML 160 (598)
Q Consensus 93 sc---------~~aH~tTm~il~~L~~YsWdAK~vLtLAAFAl~YGefwlL~q~~~~n~LakSlA~Lkqlp~i~---~~~ 160 (598)
|| ++||+|||+|||+||+|||||||||||||||+||||||||+|+|++||||||||+|||||+|+ +.+
T Consensus 81 Scem~ck~~g~~~aH~TTm~Il~~Ls~YsWDAK~VLtLAAFAl~YGeFwlLaq~~~~n~LakSlA~LkqlP~i~~~~~~l 160 (286)
T PF14576_consen 81 SCEMSCKCSGEEDAHQTTMSILNMLSSYSWDAKAVLTLAAFALEYGEFWLLAQIYPTNPLAKSLAILKQLPDILEHSDSL 160 (286)
T ss_pred HHHheecCCCCchHhHHHHHHHHHhhcCCcHHHHHHHHHHHHHHhhhHHHHhhhcccCHHHHHHHHHhcchhhhhhhhcc
Confidence 99 999999999999999999999999999999999999999999999999999999999999999 789
Q ss_pred chhhHHHhHHHHHHHHHHHHhHhccCCcccccccccchhHHHhhhhhhhhhhhHHHhhhccccccccc
Q 039432 161 KPRFKALSLLVKAMVEVTKCIIEFEGLPIAHLMMDKEMISTTKSHIFIAAYWVIRSSLNCSSHINDLI 228 (598)
Q Consensus 161 k~~~~~ln~Lvk~m~~V~~cIief~~L~~~y~~~dvp~l~~a~~~Ip~~vYW~I~Siva~~s~id~L~ 228 (598)
||||+++|+|||+||||++||+||++||++||++|||+|++|++|||++|||+|+|+|||++||++|+
T Consensus 161 k~r~~~ln~LVk~mldV~~cIief~~L~~~y~~~Dvpal~~a~~~IPvavYWtI~siVAc~sqI~~lt 228 (286)
T PF14576_consen 161 KPRFDALNNLVKAMLDVTKCIIEFEELPSQYITKDVPALSTALAHIPVAVYWTIRSIVACASQITGLT 228 (286)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHcChhhccccchhHHHHHHhCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999996
No 3
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.92 E-value=3.6e-25 Score=209.62 Aligned_cols=132 Identities=19% Similarity=0.286 Sum_probs=114.9
Q ss_pred cccccCCceeecc-eecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHH
Q 039432 226 DLIAMKSEQLGVS-ELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFEL 303 (598)
Q Consensus 226 ~L~~~~~~kV~Is-~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~ 303 (598)
.|...+|..|.++ .|+||.|+|||||+|| ||++|+|+ |.++|++++ +.+.+|||||||. |+++++|++
T Consensus 16 ~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~-Lk~fYe~l~--~~~~~fEVvfVS~-------D~~~~~~~~ 85 (157)
T KOG2501|consen 16 RLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPI-LKDFYEELK--DNAAPFEVVFVSS-------DRDEESLDE 85 (157)
T ss_pred eeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCch-HHHHHHHHH--hcCCceEEEEEec-------CCCHHHHHH
Confidence 3434566689998 6999999999999998 56677777 999999995 3455999999997 889999999
Q ss_pred hhcC--CCeeeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceechhHHHHHHHhCcCccCCCchhHHhhhcc
Q 039432 304 FSCS--LPWYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNSNALDMVLIWGARGYPFSVTREIELWQE 378 (598)
Q Consensus 304 ~~~~--MPWyAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AfPFT~~r~e~L~~~ 378 (598)
|+.+ |||++|||.+ +.++.+.++|.+++||.|++++|+|.+++.||+.+|..+|. .+-.+++++
T Consensus 86 y~~~~~~~W~~iPf~d----~~~~~l~~ky~v~~iP~l~i~~~dG~~v~~d~r~~v~~~g~-------~~~~a~~~e 151 (157)
T KOG2501|consen 86 YMLEHHGDWLAIPFGD----DLIQKLSEKYEVKGIPALVILKPDGTVVTEDARLLVQLGGS-------ADPKALVDE 151 (157)
T ss_pred HHHhcCCCeEEecCCC----HHHHHHHHhcccCcCceeEEecCCCCEehHhhHHHHHhhcc-------cCHHHHHHH
Confidence 9985 9999999987 88999999999999999999999999999999999999998 555666655
No 4
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.85 E-value=5.3e-21 Score=171.99 Aligned_cols=130 Identities=22% Similarity=0.400 Sum_probs=114.7
Q ss_pred ccccccCCceeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHH
Q 039432 225 NDLIAMKSEQLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFEL 303 (598)
Q Consensus 225 d~L~~~~~~kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~ 303 (598)
|||+..+|..|++++++||.|+|+|.+.|| +|..+.+. |.++|++++ ..+.+++|++|++ |.+++.|..
T Consensus 1 ~~l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~-l~~~~~~~~--~~~~~~~vv~is~-------d~~~~~~~~ 70 (131)
T cd03009 1 DFLLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPK-LVEFYEKLK--ESGKNFEIVFISW-------DRDEESFND 70 (131)
T ss_pred CcccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHH-HHHHHHHHH--hcCCCEEEEEEEC-------CCCHHHHHH
Confidence 466667888999999999999999999997 56677777 999999984 2345799999998 566789999
Q ss_pred hhcCCCeeeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceechhHHHHHHHhCcCccCC
Q 039432 304 FSCSLPWYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNSNALDMVLIWGARGYPF 367 (598)
Q Consensus 304 ~~~~MPWyAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AfPF 367 (598)
+.+++||+.+||++ ....+.+.+.|++.++|+++++|++|+++..||++|+.+||.+||||
T Consensus 71 ~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~P~~~lid~~G~i~~~~~~~~~~~~~~~~~~~ 131 (131)
T cd03009 71 YFSKMPWLAVPFSD---RERRSRLNRTFKIEGIPTLIILDADGEVVTTDARELVLEYGADAFPF 131 (131)
T ss_pred HHHcCCeeEcccCC---HHHHHHHHHHcCCCCCCEEEEECCCCCEEcccHHHHHhhcccccCCC
Confidence 99999999999964 45567888999999999999999999999999999999999999998
No 5
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.82 E-value=3.1e-20 Score=174.70 Aligned_cols=128 Identities=21% Similarity=0.302 Sum_probs=109.1
Q ss_pred cccccCCceee-------cceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCC---CCCCeEEEEEEcCCCCCCC
Q 039432 226 DLIAMKSEQLG-------VSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKN---LEESYKIVWVPISSSETWT 294 (598)
Q Consensus 226 ~L~~~~~~kV~-------Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~---~~~~fEIVwIpid~~~~W~ 294 (598)
+|++++++|+. ++.|+||.|+|+|.|.|| +|..+++. |.++|+++..+. .+.+||||.|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~-L~~ly~~~~~~~~~~~~~~~~vV~Vs~------- 73 (146)
T cd03008 2 VLIKNNSDRDELDTEREIVARLENRVLLLFFGAVVSPQCQLFAPK-LKDFFVRLTDEFYVDRSAQLALVYVSM------- 73 (146)
T ss_pred eeeccCccccchhcccccHHHhCCCEEEEEEECCCChhHHHHHHH-HHHHHHHHHhhcccccCCCEEEEEEEC-------
Confidence 56788888554 588999999999999997 56678888 999999884321 345799999998
Q ss_pred hHhHHHHHHhhcCCC--eeeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceechhHHHHHHHhCcCcc
Q 039432 295 DVEERNFELFSCSLP--WYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNSNALDMVLIWGARGY 365 (598)
Q Consensus 295 D~de~~Fe~~~~~MP--WyAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~Af 365 (598)
|++++.+..+.++|+ |+++|+.+ .....+.+.|++.++|+++++||+|+|+..|++..|..+|.+||
T Consensus 74 D~~~~~~~~f~~~~~~~~~~~p~~~----~~~~~l~~~y~v~~iPt~vlId~~G~Vv~~~~~~~i~~~g~~~~ 142 (146)
T cd03008 74 DQSEQQQESFLKDMPKKWLFLPFED----EFRRELEAQFSVEELPTVVVLKPDGDVLAANAVDEILRLGPACF 142 (146)
T ss_pred CCCHHHHHHHHHHCCCCceeecccc----hHHHHHHHHcCCCCCCEEEEECCCCcEEeeChHHHHHHHHHHHH
Confidence 666778999999998 99999975 33457888899999999999999999999999999999999987
No 6
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.73 E-value=1.8e-17 Score=150.20 Aligned_cols=122 Identities=25% Similarity=0.358 Sum_probs=106.5
Q ss_pred ceeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCC-Ce
Q 039432 233 EQLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSL-PW 310 (598)
Q Consensus 233 ~kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~M-PW 310 (598)
..|+++.++||.|+|+|.+.|| +|.++.+. |.++|++++. ...+++|++|++ |++.+.++.+..++ +|
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~-l~~l~~~~~~--~~~~v~vi~Vs~-------d~~~~~~~~~~~~~~~~ 77 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPPCRAFTPK-LVEFYEKLKE--EGKNFEIVFVSR-------DRSEESFNEYFSEMPPW 77 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCchHHHHHHH-HHHHHHHHhh--cCCCeEEEEEec-------CCCHHHHHHHHhcCCCe
Confidence 5899999999999999999997 56677787 9999999841 225799999998 55567788888888 89
Q ss_pred eeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceechhHHHHHHH-hCcCccCC
Q 039432 311 YSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNSNALDMVLI-WGARGYPF 367 (598)
Q Consensus 311 yAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~-wG~~AfPF 367 (598)
+.+++.+ ......+.+.|++.++|+.+++|++|++++.++..++.. ||+.||||
T Consensus 78 ~~~~~~d---~~~~~~~~~~~~v~~iPt~~lid~~G~iv~~~~~~~~~~~~~~~~~~~ 132 (132)
T cd02964 78 LAVPFED---EELRELLEKQFKVEGIPTLVVLKPDGDVVTTNARDEVEEDPGACAFPW 132 (132)
T ss_pred EeeccCc---HHHHHHHHHHcCCCCCCEEEEECCCCCEEchhHHHHHHhCcccccCCC
Confidence 9999953 456678999999999999999999999999999999998 99999998
No 7
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.51 E-value=5e-14 Score=119.68 Aligned_cols=92 Identities=21% Similarity=0.366 Sum_probs=79.3
Q ss_pred CcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCC--CeeeeecCCc
Q 039432 242 DKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSL--PWYSVRQPQL 318 (598)
Q Consensus 242 gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~M--PWyAVp~~~~ 318 (598)
||.++|+|.+.|| +|..+++. |.++|++.. + +.+++||+||+ |++++.++++..++ ||+.+|+.+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~-l~~l~~~~~--~-~~~v~~v~Vs~-------d~~~~~~~~~~~~~~~~~~~~~~~~- 68 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPK-LKELYKKYK--K-KDDVEFVFVSL-------DEDEEEWKKFLKKNNFPWYNVPFDD- 68 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHH-HHHHHHHHT--T-TTTEEEEEEE--------SSSHHHHHHHHHTCTTSSEEEETTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHH-HHHHHHHhC--C-CCCEEEEEEEe-------CCCHHHHHHHHHhcCCCceEEeeCc-
Confidence 8999999999997 56677888 999999984 2 78999999998 67788999998888 999999976
Q ss_pred ccHHHHHHHHHhhccCCccEEEEeCCCCce
Q 039432 319 LNSAVVNLIKQEWNFKEEPIMVVLDSQGMV 348 (598)
Q Consensus 319 i~~~~~r~ike~~~~~~iP~LVvL~pqGkv 348 (598)
.....+.+.|++.++|++++|||+|+|
T Consensus 69 ---~~~~~l~~~~~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 69 ---DNNSELLKKYGINGIPTLVLLDPDGKI 95 (95)
T ss_dssp ---HHHHHHHHHTT-TSSSEEEEEETTSBE
T ss_pred ---chHHHHHHHCCCCcCCEEEEECCCCCC
Confidence 447789999999999999999999986
No 8
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.70 E-value=5.4e-08 Score=87.55 Aligned_cols=107 Identities=13% Similarity=0.116 Sum_probs=74.4
Q ss_pred CCceeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhc--C
Q 039432 231 KSEQLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSC--S 307 (598)
Q Consensus 231 ~~~kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~--~ 307 (598)
.|..|++++++||.|+|+|-+.|| +|..+++. |.++|++.. ..+++||.|+.+... .+++.+....+.. .
T Consensus 12 ~~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~-l~~l~~~~~----~~~~~vi~i~~~~~~--~~~~~~~~~~~~~~~~ 84 (126)
T cd03012 12 TDKPLSLAQLRGKVVLLDFWTYCCINCLHTLPY-LTDLEQKYK----DDGLVVIGVHSPEFA--FERDLANVKSAVLRYG 84 (126)
T ss_pred CCCccCHHHhCCCEEEEEEECCCCccHHHHHHH-HHHHHHHcC----cCCeEEEEeccCccc--cccCHHHHHHHHHHcC
Confidence 356799999999999999999997 56788888 999999983 257999998861111 0222333333322 3
Q ss_pred CCeeeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceech
Q 039432 308 LPWYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 308 MPWyAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 351 (598)
++|..+- |. ...+.+.|++.+.|..+|+|++|+++..
T Consensus 85 ~~~p~~~-----D~--~~~~~~~~~v~~~P~~~vid~~G~v~~~ 121 (126)
T cd03012 85 ITYPVAN-----DN--DYATWRAYGNQYWPALYLIDPTGNVRHV 121 (126)
T ss_pred CCCCEEE-----CC--chHHHHHhCCCcCCeEEEECCCCcEEEE
Confidence 4443222 22 2344567899999999999999999854
No 9
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.67 E-value=7.2e-08 Score=84.18 Aligned_cols=103 Identities=12% Similarity=0.194 Sum_probs=71.3
Q ss_pred cCCceeecceec-CcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcC
Q 039432 230 MKSEQLGVSELK-DKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCS 307 (598)
Q Consensus 230 ~~~~kV~Is~L~-gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~ 307 (598)
.+|+.+.++.++ ||.|+|+|-+.|| +|..+++. |.++|++. +.++.|+-|+- .+.+..+.+...
T Consensus 8 ~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~-l~~~~~~~-----~~~~~vi~v~~--------~~~~~~~~~~~~ 73 (114)
T cd02967 8 IDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPV-IRSIARAE-----ADWLDVVLASD--------GEKAEHQRFLKK 73 (114)
T ss_pred CCCCEEEcccccCCCeEEEEEECCCCcchHhHhHH-HHHHHHHh-----cCCcEEEEEeC--------CCHHHHHHHHHH
Confidence 467789999998 9999999999997 56677777 88888774 23477776542 223344444443
Q ss_pred CCeeeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceechh
Q 039432 308 LPWYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNSN 352 (598)
Q Consensus 308 MPWyAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n 352 (598)
++.-..|+ ..+. .+.+.|++.++|+.+++|++|+++..+
T Consensus 74 ~~~~~~p~--~~~~----~~~~~~~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 74 HGLEAFPY--VLSA----ELGMAYQVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred hCCCCCcE--EecH----HHHhhcCCCCcCeEEEECCCCeEEecc
Confidence 33222222 1122 256789999999999999999998654
No 10
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.64 E-value=1.1e-07 Score=85.94 Aligned_cols=112 Identities=11% Similarity=0.174 Sum_probs=79.1
Q ss_pred cCCceeecceecCcEEEEEEecCCCC--ChhhhhHHHHHHhcCcCCCCCC-CCeEEEEEEcCCCCCCChHhHHHHHHhhc
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPELL--PLEKLFLLVHQTYDHPHNKNLE-ESYKIVWVPISSSETWTDVEERNFELFSC 306 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~~~--~~~~~~~~L~~iY~~l~~~~~~-~~fEIVwIpid~~~~W~D~de~~Fe~~~~ 306 (598)
.+|..++++.++||.++|+|.+.||+ |..+++. |.++|+++. +.+ ++++||+|++|.... +.+..++|-+-+.
T Consensus 10 ~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~-l~~~~~~~~--~~~~~~v~~v~vs~d~~~d-~~~~~~~~~~~~~ 85 (142)
T cd02968 10 QDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLAN-LAQALKQLG--ADGGDDVQVVFISVDPERD-TPEVLKAYAKAFG 85 (142)
T ss_pred CCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHH-HHHHHHHhh--HhhcCceEEEEEEECCCCC-CHHHHHHHHHHhC
Confidence 46668999999999999999999984 6678888 999999984 122 579999999842100 0122333433332
Q ss_pred CCCeeeeecCCcccHHHHHHHHHhhccCC--------------ccEEEEeCCCCceec
Q 039432 307 SLPWYSVRQPQLLNSAVVNLIKQEWNFKE--------------EPIMVVLDSQGMVTN 350 (598)
Q Consensus 307 ~MPWyAVp~~~~i~~~~~r~ike~~~~~~--------------iP~LVvL~pqGkv~~ 350 (598)
.+|..+..++ +..+.+.+.|++.. .|..+|+||+|+++.
T Consensus 86 -~~~~~l~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~ 138 (142)
T cd02968 86 -PGWIGLTGTP----EEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVR 138 (142)
T ss_pred -CCcEEEECCH----HHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEE
Confidence 5788887753 34556667777654 357999999999975
No 11
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.59 E-value=1.9e-07 Score=78.69 Aligned_cols=106 Identities=11% Similarity=0.145 Sum_probs=74.8
Q ss_pred cCCceeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCC
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSL 308 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~M 308 (598)
.+|..+..++++||.++|+|.+.|| .|...++. |.++++++. +.++.++.|++|. .+.+.-+.|-.-+. -
T Consensus 7 ~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~-l~~~~~~~~----~~~~~~~~v~~d~---~~~~~~~~~~~~~~-~ 77 (116)
T cd02966 7 LDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPE-LEALAKEYK----DDGVEVVGVNVDD---DDPAAVKAFLKKYG-I 77 (116)
T ss_pred CCCCEeehHHcCCCEEEEEeecccChhHHHHhHH-HHHHHHHhC----CCCeEEEEEECCC---CCHHHHHHHHHHcC-C
Confidence 4567899999999999999999997 45566666 888888862 4568899999732 12333333333222 3
Q ss_pred CeeeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceech
Q 039432 309 PWYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 309 PWyAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 351 (598)
||.-+. +. .+.+.+.|++.+.|.++++||+|+++..
T Consensus 78 ~~~~~~-----~~--~~~~~~~~~~~~~P~~~l~d~~g~v~~~ 113 (116)
T cd02966 78 TFPVLL-----DP--DGELAKAYGVRGLPTTFLIDRDGRIRAR 113 (116)
T ss_pred CcceEE-----cC--cchHHHhcCcCccceEEEECCCCcEEEE
Confidence 333222 22 3567889999999999999999999853
No 12
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.40 E-value=7.2e-07 Score=83.41 Aligned_cols=105 Identities=16% Similarity=0.219 Sum_probs=75.6
Q ss_pred cCCceeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCC
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSL 308 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~M 308 (598)
.+|..+++++++||.++|+|-+.|| +|..+.+. |.+++++.. +.++++|-|+. |.+.+...++...+
T Consensus 49 ~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~-l~~~~~~~~----~~~~~vi~i~~-------d~~~~~~~~~~~~~ 116 (173)
T PRK03147 49 LEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPY-MNELYPKYK----EKGVEIIAVNV-------DETELAVKNFVNRY 116 (173)
T ss_pred CCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHH-HHHHHHHhh----cCCeEEEEEEc-------CCCHHHHHHHHHHh
Confidence 4566899999999999999999997 46666777 899999873 34689999997 33344444444443
Q ss_pred CeeeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceech
Q 039432 309 PWYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 309 PWyAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 351 (598)
+ ++|+-.+|. .+.+.+.|++++.|+.+++|++|+++..
T Consensus 117 ~---~~~~~~~d~--~~~~~~~~~v~~~P~~~lid~~g~i~~~ 154 (173)
T PRK03147 117 G---LTFPVAIDK--GRQVIDAYGVGPLPTTFLIDKDGKVVKV 154 (173)
T ss_pred C---CCceEEECC--cchHHHHcCCCCcCeEEEECCCCcEEEE
Confidence 2 233322222 2456667899999999999999999843
No 13
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.31 E-value=1.7e-06 Score=96.71 Aligned_cols=109 Identities=14% Similarity=0.143 Sum_probs=81.8
Q ss_pred ccCCceeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCC-hHhHHHHHHhhc
Q 039432 229 AMKSEQLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWT-DVEERNFELFSC 306 (598)
Q Consensus 229 ~~~~~kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~-D~de~~Fe~~~~ 306 (598)
-.+|.++.++ +||.|+|+|-|.|| +|..+++. |.++|++.. ..+++||-|.++ .++ +.+.+.|.++..
T Consensus 45 D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~-L~eL~~e~k----~~~v~VI~Vs~~---~~~~e~~~~~~~~~~~ 114 (521)
T PRK14018 45 DNRPASVYLK--KDKPTLIKFWASWCPLCLSELGE-TEKWAQDAK----FSSANLITVASP---GFLHEKKDGDFQKWYA 114 (521)
T ss_pred cCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHH-HHHHHHHhc----cCCeEEEEEecc---cccccccHHHHHHHHH
Confidence 3566677777 99999999999998 67788888 999999862 346899988862 232 445678888887
Q ss_pred CCCeeeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceech
Q 039432 307 SLPWYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 307 ~MPWyAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 351 (598)
.+.|..+|.-- |. -..+.+.|+++++|++++||++|+++..
T Consensus 115 ~~~y~~~pV~~--D~--~~~lak~fgV~giPTt~IIDkdGkIV~~ 155 (521)
T PRK14018 115 GLDYPKLPVLT--DN--GGTLAQSLNISVYPSWAIIGKDGDVQRI 155 (521)
T ss_pred hCCCcccceec--cc--cHHHHHHcCCCCcCeEEEEcCCCeEEEE
Confidence 77665444311 22 2346678899999999999999999854
No 14
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.31 E-value=2.7e-06 Score=74.86 Aligned_cols=103 Identities=16% Similarity=0.280 Sum_probs=74.6
Q ss_pred cCCceeecceecCcEEEEEEecC-CC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcC
Q 039432 230 MKSEQLGVSELKDKVVILLVSKP-EL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCS 307 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal-~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~ 307 (598)
.+|.++++++|+||.++|+|-+. || .|..++.. |.+.|++++ ..+..|+.|+.|. .++.++|.+...
T Consensus 13 ~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~-l~~~~~~~~----~~~~~vi~is~d~-----~~~~~~~~~~~~- 81 (124)
T PF00578_consen 13 SDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPE-LNELYKKYK----DKGVQVIGISTDD-----PEEIKQFLEEYG- 81 (124)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHH-HHHHHHHHH----TTTEEEEEEESSS-----HHHHHHHHHHHT-
T ss_pred CCCCEEEHHHHCCCcEEEEEeCccCccccccchhH-HHHHhhhhc----cceEEeeeccccc-----ccchhhhhhhhc-
Confidence 45779999999999999999888 87 56677777 999999883 3479999999832 223455554443
Q ss_pred CCeeeeecCCcccHHHHHHHHHhhccC------CccEEEEeCCCCceec
Q 039432 308 LPWYSVRQPQLLNSAVVNLIKQEWNFK------EEPIMVVLDSQGMVTN 350 (598)
Q Consensus 308 MPWyAVp~~~~i~~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~ 350 (598)
+||-.+.-++ ..+.+.|+.. ..|...++||+|+++.
T Consensus 82 ~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 82 LPFPVLSDPD-------GELAKAFGIEDEKDTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp CSSEEEEETT-------SHHHHHTTCEETTTSEESEEEEEEETTSBEEE
T ss_pred cccccccCcc-------hHHHHHcCCccccCCceEeEEEEECCCCEEEe
Confidence 3333333222 3455666777 9999999999999874
No 15
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.29 E-value=2.5e-06 Score=78.00 Aligned_cols=105 Identities=14% Similarity=0.208 Sum_probs=77.6
Q ss_pred cCCceeecceecCcEEEEEEecC-CC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcC
Q 039432 230 MKSEQLGVSELKDKVVILLVSKP-EL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCS 307 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal-~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~ 307 (598)
.+|..+++++++||.|+|.|-+. || +|..+++. |.++|++.+ +.++++|.|..+. |....+|-.- ..
T Consensus 16 ~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~-l~~l~~~~~----~~~v~~v~v~~~~-----~~~~~~~~~~-~~ 84 (146)
T PF08534_consen 16 LDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPY-LNELQEKYK----DKGVDVVGVSSDD-----DPPVREFLKK-YG 84 (146)
T ss_dssp TTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHH-HHHHHHHHH----TTTCEEEEEEESS-----SHHHHHHHHH-TT
T ss_pred CCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhh-HHhhhhhhc----cCceEEEEecccC-----CHHHHHHHHh-hC
Confidence 67889999999999999999999 98 56788887 899988752 3469999999832 3334455443 44
Q ss_pred CCeeeeecCCcccHHHHHHHHHhhccC---------CccEEEEeCCCCceechh
Q 039432 308 LPWYSVRQPQLLNSAVVNLIKQEWNFK---------EEPIMVVLDSQGMVTNSN 352 (598)
Q Consensus 308 MPWyAVp~~~~i~~~~~r~ike~~~~~---------~iP~LVvL~pqGkv~~~n 352 (598)
.+|..+--++ ..+.+.|++. +.|..+++|++|+|+...
T Consensus 85 ~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~ 131 (146)
T PF08534_consen 85 INFPVLSDPD-------GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRH 131 (146)
T ss_dssp TTSEEEEETT-------SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEE
T ss_pred CCceEEechH-------HHHHHHhCCccccccccCCeecEEEEEECCCEEEEEE
Confidence 5555543322 3455566877 999999999999998653
No 16
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.26 E-value=2.9e-06 Score=75.89 Aligned_cols=98 Identities=14% Similarity=0.087 Sum_probs=70.0
Q ss_pred ceeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhh--cCCC
Q 039432 233 EQLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFS--CSLP 309 (598)
Q Consensus 233 ~kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~--~~MP 309 (598)
..++.++++||.|+|+|-+.|| +|..+.+. |.+++++. +++||-|+. |...+...++. ...|
T Consensus 16 ~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~-l~~l~~~~-------~~~vv~v~~-------~~~~~~~~~~~~~~~~~ 80 (127)
T cd03010 16 KTLTSADLKGKPYLLNVWASWCAPCREEHPV-LMALARQG-------RVPIYGINY-------KDNPENALAWLARHGNP 80 (127)
T ss_pred ccccHHHcCCCEEEEEEEcCcCHHHHHHHHH-HHHHHHhc-------CcEEEEEEC-------CCCHHHHHHHHHhcCCC
Confidence 5788899999999999999998 46677777 88776542 388888887 22233333332 3347
Q ss_pred eeeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceech
Q 039432 310 WYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 310 WyAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 351 (598)
|..+-... . ..+.+.|++.++|+.++||++|+++..
T Consensus 81 ~~~~~~D~----~--~~~~~~~~v~~~P~~~~ld~~G~v~~~ 116 (127)
T cd03010 81 YAAVGFDP----D--GRVGIDLGVYGVPETFLIDGDGIIRYK 116 (127)
T ss_pred CceEEECC----c--chHHHhcCCCCCCeEEEECCCceEEEE
Confidence 76554422 2 346677899999999999999998843
No 17
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.24 E-value=3.3e-06 Score=79.86 Aligned_cols=109 Identities=8% Similarity=0.102 Sum_probs=76.0
Q ss_pred cCCceeeccee-cCcEEEEEEecCCCCC-hhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCC-CCCChHhHHHHHHhhc
Q 039432 230 MKSEQLGVSEL-KDKVVILLVSKPELLP-LEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSS-ETWTDVEERNFELFSC 306 (598)
Q Consensus 230 ~~~~kV~Is~L-~gK~VlLyfSal~~~~-~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~-~~W~D~de~~Fe~~~~ 306 (598)
.+|+.|.++.+ +||.|+|||=+.||++ ..+++. |.+++++.. +.+++||-|++|.. ..+.| +.+....+..
T Consensus 12 ~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~-l~~l~~~~~----~~~v~~v~is~d~~~~~~~d-~~~~~~~~~~ 85 (171)
T cd02969 12 TDGKTYSLADFADGKALVVMFICNHCPYVKAIEDR-LNRLAKEYG----AKGVAVVAINSNDIEAYPED-SPENMKAKAK 85 (171)
T ss_pred CCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHH-HHHHHHHHh----hCCeEEEEEecCcccccccc-CHHHHHHHHH
Confidence 45678999998 9999999999999754 456666 899999873 35799999998432 11211 3344444333
Q ss_pred --CCCeeeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceech
Q 039432 307 --SLPWYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 307 --~MPWyAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 351 (598)
..||-.+ .|.. +.+.+.|++.+.|..+++||+|+++-.
T Consensus 86 ~~~~~~~~l-----~D~~--~~~~~~~~v~~~P~~~lid~~G~v~~~ 125 (171)
T cd02969 86 EHGYPFPYL-----LDET--QEVAKAYGAACTPDFFLFDPDGKLVYR 125 (171)
T ss_pred HCCCCceEE-----ECCc--hHHHHHcCCCcCCcEEEECCCCeEEEe
Confidence 3443222 2322 356678899999999999999999854
No 18
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.24 E-value=6.4e-06 Score=78.43 Aligned_cols=103 Identities=11% Similarity=0.211 Sum_probs=74.9
Q ss_pred ceeecceecCcEEEEEEe-cCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhh-----
Q 039432 233 EQLGVSELKDKVVILLVS-KPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFS----- 305 (598)
Q Consensus 233 ~kV~Is~L~gK~VlLyfS-al~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~----- 305 (598)
..+++++++||.|+|+|- +.|| +|..+++. |.+.|+++. ..++.||.|+.|. ....+.|....
T Consensus 20 ~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~-l~~~~~~~~----~~~v~vv~Is~d~-----~~~~~~~~~~~~~~~~ 89 (173)
T cd03015 20 KEISLSDYKGKWVVLFFYPLDFTFVCPTEIIA-FSDRYEEFK----KLNAEVLGVSTDS-----HFSHLAWRNTPRKEGG 89 (173)
T ss_pred eEEehHHhCCCEEEEEEECCCCCCcCHHHHHH-HHHHHHHHH----HCCCEEEEEecCC-----HHHHHHHHHhhhhhCC
Confidence 589999999999999987 7886 67788888 999999984 2569999999832 22334565543
Q ss_pred -cCCCeeeeecCCcccHHHHHHHHHhhccC------CccEEEEeCCCCceechh
Q 039432 306 -CSLPWYSVRQPQLLNSAVVNLIKQEWNFK------EEPIMVVLDSQGMVTNSN 352 (598)
Q Consensus 306 -~~MPWyAVp~~~~i~~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~n 352 (598)
...||-.+.-++ .+.. +.|++. .+|+.+|||++|+++..+
T Consensus 90 ~~~~~f~~l~D~~---~~~~----~~~gv~~~~~~~~~p~~~lID~~G~I~~~~ 136 (173)
T cd03015 90 LGKINFPLLADPK---KKIS----RDYGVLDEEEGVALRGTFIIDPEGIIRHIT 136 (173)
T ss_pred ccCcceeEEECCc---hhHH----HHhCCccccCCceeeEEEEECCCCeEEEEE
Confidence 356776665432 2333 345664 578999999999998766
No 19
>PLN02412 probable glutathione peroxidase
Probab=98.22 E-value=6.6e-06 Score=78.55 Aligned_cols=117 Identities=12% Similarity=0.223 Sum_probs=81.0
Q ss_pred cCCceeecceecCcEEEEEEecCCCCChh-hhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCC---CCCh-HhHHHH-HH
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPELLPLE-KLFLLVHQTYDHPHNKNLEESYKIVWVPISSSE---TWTD-VEERNF-EL 303 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~~~~~~-~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~---~W~D-~de~~F-e~ 303 (598)
.+|.++.++.++||.|+|+|-+.||+|+. +.+. |.+.|++.+ +.+++||=||.|... .-+. +-.+.| +.
T Consensus 17 ~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~-l~~l~~~~~----~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~ 91 (167)
T PLN02412 17 IGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKE-LNVLYEKYK----EQGFEILAFPCNQFLGQEPGSNEEIQQTVCTR 91 (167)
T ss_pred CCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHH-HHHHHHHHh----hCCcEEEEecccccccCCCCCHHHHHHHHHHc
Confidence 56778999999999999999999986664 7888 999999984 346999999973211 1222 224445 55
Q ss_pred hhcCCCeeee--ecCCcccHHHHHHHHHh----hc--cCCccEEEEeCCCCceechh
Q 039432 304 FSCSLPWYSV--RQPQLLNSAVVNLIKQE----WN--FKEEPIMVVLDSQGMVTNSN 352 (598)
Q Consensus 304 ~~~~MPWyAV--p~~~~i~~~~~r~ike~----~~--~~~iP~LVvL~pqGkv~~~n 352 (598)
+.-+.|+++- +.... .....++++.. +. ++..|+-.++|++|+++..-
T Consensus 92 ~~~~fpvl~~~d~~g~~-~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~ 147 (167)
T PLN02412 92 FKAEFPIFDKVDVNGKN-TAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRY 147 (167)
T ss_pred cCCCCceEeEEeeCCCC-CCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEE
Confidence 5667788752 22111 23445555543 12 56679999999999999754
No 20
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.22 E-value=1.9e-06 Score=80.41 Aligned_cols=116 Identities=14% Similarity=0.185 Sum_probs=71.7
Q ss_pred cCCceeecceecCcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCC--C-CChHhHHHHHHh--
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSE--T-WTDVEERNFELF-- 304 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~--~-W~D~de~~Fe~~-- 304 (598)
.+|..+.++.++||.|+|+|-+.||+|..+++. |+++|++.. +.+++||-|++|... + =+.++-++|-.-
T Consensus 10 ~~G~~v~l~~~~Gk~vvl~fwatwC~C~~e~p~-l~~l~~~~~----~~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~ 84 (152)
T cd00340 10 IDGEPVSLSKYKGKVLLIVNVASKCGFTPQYEG-LEALYEKYK----DRGLVVLGFPCNQFGGQEPGSNEEIKEFCETNY 84 (152)
T ss_pred CCCCEEeHHHhCCCEEEEEEEcCCCCchHHHHH-HHHHHHHhc----CCCEEEEEeccCccccCCCCCHHHHHHHHHHhc
Confidence 467789999999999999999999889999998 999999973 245999999873210 0 011234455432
Q ss_pred hcCCCeeeee--cCCcccHHHHHHHHHhh------ccCCccEEEEeCCCCceech
Q 039432 305 SCSLPWYSVR--QPQLLNSAVVNLIKQEW------NFKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 305 ~~~MPWyAVp--~~~~i~~~~~r~ike~~------~~~~iP~LVvL~pqGkv~~~ 351 (598)
.-+.|.++-+ ..... ....+++.+.. ..+..|+.+++|++|+++..
T Consensus 85 ~~~fp~~~d~d~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~ 138 (152)
T cd00340 85 GVTFPMFAKIDVNGENA-HPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKR 138 (152)
T ss_pred CCCceeeeeEeccCCCC-ChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEE
Confidence 2234544321 11100 11112211111 12223389999999999864
No 21
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.14 E-value=1.7e-05 Score=71.40 Aligned_cols=105 Identities=12% Similarity=0.170 Sum_probs=75.9
Q ss_pred cCCceeecceecCcEEEEEEe-cCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcC
Q 039432 230 MKSEQLGVSELKDKVVILLVS-KPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCS 307 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfS-al~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~ 307 (598)
.+|+.+++++++||.++|+|- +.|| .|..+++. |.+.|+++. ..+++||.|+.|. ....+.|-+-...
T Consensus 10 ~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~-l~~~~~~~~----~~~~~~i~is~d~-----~~~~~~~~~~~~~ 79 (140)
T cd02971 10 TDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCA-FRDLAEEFA----KGGAEVLGVSVDS-----PFSHKAWAEKEGG 79 (140)
T ss_pred CCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHH-HHHHHHHHH----HCCCEEEEEeCCC-----HHHHHHHHhcccC
Confidence 457789999999998888877 7886 57788888 999999983 3469999999721 2334455544435
Q ss_pred CCeeeeecCCcccHHHHHHHHHhhccCCcc---------EEEEeCCCCceech
Q 039432 308 LPWYSVRQPQLLNSAVVNLIKQEWNFKEEP---------IMVVLDSQGMVTNS 351 (598)
Q Consensus 308 MPWyAVp~~~~i~~~~~r~ike~~~~~~iP---------~LVvL~pqGkv~~~ 351 (598)
.+|-.+-- .. ..+.+.|++...| ..+|+|++|+++..
T Consensus 80 ~~~~~l~D-----~~--~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~ 125 (140)
T cd02971 80 LNFPLLSD-----PD--GEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYV 125 (140)
T ss_pred CCceEEEC-----CC--hHHHHHcCCccccccccCceeEEEEEECCCCcEEEE
Confidence 56655432 22 2566778887665 89999999999865
No 22
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.13 E-value=5.2e-06 Score=74.89 Aligned_cols=104 Identities=15% Similarity=0.199 Sum_probs=74.4
Q ss_pred cCCceeecceecCcEEEEEEe-cCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcC
Q 039432 230 MKSEQLGVSELKDKVVILLVS-KPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCS 307 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfS-al~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~ 307 (598)
.+|..+.+++++||.++|+|- +.||+ |..+++. |.+.|+++. +.+++||.|+.|. .+.-.+|-..+ .
T Consensus 11 ~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~-l~~~~~~~~----~~~~~vv~is~d~-----~~~~~~~~~~~-~ 79 (140)
T cd03017 11 QDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACD-FRDLYEEFK----ALGAVVIGVSPDS-----VESHAKFAEKY-G 79 (140)
T ss_pred CCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHH-HHHHHHHHH----HCCCEEEEEcCCC-----HHHHHHHHHHh-C
Confidence 467789999999999999987 56764 6678888 899999883 2468999999731 33334444332 3
Q ss_pred CCeeeeecCCcccHHHHHHHHHhhccCCc---------cEEEEeCCCCceech
Q 039432 308 LPWYSVRQPQLLNSAVVNLIKQEWNFKEE---------PIMVVLDSQGMVTNS 351 (598)
Q Consensus 308 MPWyAVp~~~~i~~~~~r~ike~~~~~~i---------P~LVvL~pqGkv~~~ 351 (598)
++|-.+- |.. +.+.+.|++... |+.+++|++|+++..
T Consensus 80 ~~~~~l~-----D~~--~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~ 125 (140)
T cd03017 80 LPFPLLS-----DPD--GKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKV 125 (140)
T ss_pred CCceEEE-----CCc--cHHHHHhCCccccccccCCcceeEEEECCCCEEEEE
Confidence 5554432 222 346677898887 999999999999854
No 23
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.12 E-value=1.4e-05 Score=77.79 Aligned_cols=99 Identities=16% Similarity=0.214 Sum_probs=69.4
Q ss_pred cCCceeec--ceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHH-hh
Q 039432 230 MKSEQLGV--SELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFEL-FS 305 (598)
Q Consensus 230 ~~~~kV~I--s~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~-~~ 305 (598)
.+|..+.+ +.++||.|.|+|.+.|| +|+.+++. +.++|++. ++++++|+.| ++++.++|-. +.
T Consensus 60 ~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~-l~~~~~~~-------~~~vv~Is~~-----~~~~~~~~~~~~~ 126 (189)
T TIGR02661 60 FDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPI-IKSIARAE-------ETDVVMISDG-----TPAEHRRFLKDHE 126 (189)
T ss_pred CCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHH-HHHHHHhc-------CCcEEEEeCC-----CHHHHHHHHHhcC
Confidence 45678888 46899999999999998 56677777 88888652 4778999852 1333444443 22
Q ss_pred cCCCeeeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceech
Q 039432 306 CSLPWYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 306 ~~MPWyAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 351 (598)
-+.|.|. . + ..+.+.|++.++|..+++|++|++...
T Consensus 127 ~~~~~~~--~----~----~~i~~~y~v~~~P~~~lID~~G~I~~~ 162 (189)
T TIGR02661 127 LGGERYV--V----S----AEIGMAFQVGKIPYGVLLDQDGKIRAK 162 (189)
T ss_pred CCcceee--c----h----hHHHHhccCCccceEEEECCCCeEEEc
Confidence 2344443 1 1 234567899999999999999999863
No 24
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.12 E-value=2e-05 Score=76.16 Aligned_cols=116 Identities=16% Similarity=0.326 Sum_probs=75.4
Q ss_pred cCCceeecceecCcEE-EEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCC---CCCCChHhHHHHH--
Q 039432 230 MKSEQLGVSELKDKVV-ILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISS---SETWTDVEERNFE-- 302 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~V-lLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~---~~~W~D~de~~Fe-- 302 (598)
.+|..|++++++||.| ++++-+.|| +|.++++. |.++|++.+ +.+++||-||.|. .+.++.++-.+|-
T Consensus 28 ~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~-l~~l~~~~~----~~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~ 102 (183)
T PTZ00256 28 IDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQ-LVELYKQYK----SQGLEILAFPCNQFMEQEPWDEPEIKEYVQK 102 (183)
T ss_pred CCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHH-HHHHHHHHh----hCCcEEEEEecccccccCCCCHHHHHHHHHH
Confidence 5677899999999965 445579997 56688998 999999973 3469999999731 1234444444553
Q ss_pred HhhcCCCeeee--ecCCcccHHHHHHHHHhh--------ccCCccE---EEEeCCCCceech
Q 039432 303 LFSCSLPWYSV--RQPQLLNSAVVNLIKQEW--------NFKEEPI---MVVLDSQGMVTNS 351 (598)
Q Consensus 303 ~~~~~MPWyAV--p~~~~i~~~~~r~ike~~--------~~~~iP~---LVvL~pqGkv~~~ 351 (598)
.+.-+.|=++- +-.. ...+..+++++.. .+.++|. .+++|++|+++..
T Consensus 103 ~~~~~fpv~~d~d~~g~-~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~ 163 (183)
T PTZ00256 103 KFNVDFPLFQKIEVNGE-NTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKY 163 (183)
T ss_pred hcCCCCCCceEEecCCC-CCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEE
Confidence 22222332211 1111 1134666777665 4678995 6999999999864
No 25
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.11 E-value=7.2e-06 Score=72.53 Aligned_cols=98 Identities=20% Similarity=0.294 Sum_probs=67.7
Q ss_pred cCCceeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCC
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSL 308 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~M 308 (598)
.+|..+..+.++||.++|+|-+.|| +|....+. |.++|++ ++++-|+.|. + +.+.-+.|-..+ .+
T Consensus 8 ~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~-l~~~~~~---------~~~i~i~~~~-~--~~~~~~~~~~~~-~~ 73 (123)
T cd03011 8 LDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPT-VNQLAAD---------YPVVSVALRS-G--DDGAVARFMQKK-GY 73 (123)
T ss_pred CCCCEeeHHHhCCCEEEEEEECCcChhhhhhChH-HHHHHhh---------CCEEEEEccC-C--CHHHHHHHHHHc-CC
Confidence 4567899999999999999999998 45566667 8888866 6678888621 0 123333444333 25
Q ss_pred CeeeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 309 PWYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 309 PWyAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
||-.+.-+ . ..+.+.|++.+.|+++++|++| +.
T Consensus 74 ~~~~~~d~-----~--~~~~~~~~i~~~P~~~vid~~g-i~ 106 (123)
T cd03011 74 GFPVINDP-----D--GVISARWGVSVTPAIVIVDPGG-IV 106 (123)
T ss_pred CccEEECC-----C--cHHHHhCCCCcccEEEEEcCCC-eE
Confidence 55444322 1 3466788999999999999998 44
No 26
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.08 E-value=8.4e-06 Score=78.83 Aligned_cols=100 Identities=11% Similarity=0.071 Sum_probs=67.5
Q ss_pred Cceeeccee-cCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCC
Q 039432 232 SEQLGVSEL-KDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLP 309 (598)
Q Consensus 232 ~~kV~Is~L-~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MP 309 (598)
|..+..+.+ +||.|+|+|-+.|| +|.++.+. |.+++++ +++|+.|+.|. +.++-.+|-.- ..+|
T Consensus 57 g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~-l~~l~~~--------~~~vi~v~~~~----~~~~~~~~~~~-~~~~ 122 (185)
T PRK15412 57 GQFYQADVLTQGKPVLLNVWATWCPTCRAEHQY-LNQLSAQ--------GIRVVGMNYKD----DRQKAISWLKE-LGNP 122 (185)
T ss_pred CccccHHHhcCCCEEEEEEECCCCHHHHHHHHH-HHHHHHc--------CCEEEEEECCC----CHHHHHHHHHH-cCCC
Confidence 345566665 79999999999998 56677888 8777542 58999998721 11223334322 2456
Q ss_pred eeeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceech
Q 039432 310 WYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 310 WyAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 351 (598)
|..+.+.. . ..+.+.|++.++|+.+++|++|+++..
T Consensus 123 ~~~~~~D~----~--~~~~~~~gv~~~P~t~vid~~G~i~~~ 158 (185)
T PRK15412 123 YALSLFDG----D--GMLGLDLGVYGAPETFLIDGNGIIRYR 158 (185)
T ss_pred CceEEEcC----C--ccHHHhcCCCcCCeEEEECCCceEEEE
Confidence 66444422 1 234567899999999999999998754
No 27
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.02 E-value=3.3e-06 Score=81.13 Aligned_cols=47 Identities=21% Similarity=0.442 Sum_probs=39.8
Q ss_pred cccCcEEEEEcCCChhHH---HHHHHHHHHH-Hh---cCceeeEEEeccCCchhhH
Q 039432 398 VQEGRNICLYGSENKDWI---IEFNAKMMEI-RR---LGLQVDMVFVGVKNPSEQV 446 (598)
Q Consensus 398 i~egK~I~LYgg~d~~Wi---r~FT~~l~~i-~~---~~~~~E~v~Vgkd~~~e~v 446 (598)
-.+||.|+||||+ +|| |+||+.++++ ++ .+.+||+||||+|+..+..
T Consensus 30 ~l~gKvV~lyFsA--~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~ 83 (157)
T KOG2501|consen 30 ALQGKVVGLYFSA--HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESL 83 (157)
T ss_pred hhCCcEEEEEEEE--EECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHH
Confidence 3599999999999 776 9999999888 54 5568999999999766653
No 28
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.01 E-value=1e-05 Score=75.04 Aligned_cols=104 Identities=10% Similarity=0.155 Sum_probs=71.3
Q ss_pred cCCceeecceecCcEEEEEEecCC-CC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcC
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPE-LL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCS 307 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~-~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~ 307 (598)
.+|..+++++++||.++|+|=+.| |+ |..++.. |.+.|+++. +.++++|-|++| +.+.-++|-.-+ .
T Consensus 18 ~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~-l~~~~~~~~----~~~v~vi~Is~d-----~~~~~~~~~~~~-~ 86 (154)
T PRK09437 18 QDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACG-LRDNMDELK----KAGVVVLGISTD-----KPEKLSRFAEKE-L 86 (154)
T ss_pred CCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHH-HHHHHHHHH----HCCCEEEEEcCC-----CHHHHHHHHHHh-C
Confidence 456689999999999999998765 54 6677777 899999983 345889988873 233444444333 4
Q ss_pred CCeeeeecCCcccHHHHHHHHHhhccCCc------------cEEEEeCCCCceech
Q 039432 308 LPWYSVRQPQLLNSAVVNLIKQEWNFKEE------------PIMVVLDSQGMVTNS 351 (598)
Q Consensus 308 MPWyAVp~~~~i~~~~~r~ike~~~~~~i------------P~LVvL~pqGkv~~~ 351 (598)
.||-.+.-+ . +.+.+.|++... |+.+++||+|+++..
T Consensus 87 ~~~~~l~D~-----~--~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~ 135 (154)
T PRK09437 87 LNFTLLSDE-----D--HQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHV 135 (154)
T ss_pred CCCeEEECC-----C--chHHHHhCCCcccccccccccCcceEEEEECCCCEEEEE
Confidence 566554322 1 234455676543 678999999999854
No 29
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=97.99 E-value=1.3e-05 Score=76.51 Aligned_cols=98 Identities=12% Similarity=0.074 Sum_probs=65.3
Q ss_pred eeeccee-cCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCee
Q 039432 234 QLGVSEL-KDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWY 311 (598)
Q Consensus 234 kV~Is~L-~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWy 311 (598)
.+..+.+ +||.|+|+|.+.|| +|..+.+. |.+++++ +++|+.|+.|. ..++..+|-+- ..+||.
T Consensus 54 ~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~-l~~l~~~--------~~~vi~V~~~~----~~~~~~~~~~~-~~~~f~ 119 (173)
T TIGR00385 54 AYTPEAFIQGKPVLLNVWASWCPPCRAEHPY-LNELAKD--------GLPIVGVDYKD----QSQNALKFLKE-LGNPYQ 119 (173)
T ss_pred ccCHHHhcCCCEEEEEEECCcCHHHHHHHHH-HHHHHHc--------CCEEEEEECCC----ChHHHHHHHHH-cCCCCc
Confidence 4554565 79999999999998 45566676 7776642 48999998721 01222334322 246766
Q ss_pred eeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceech
Q 039432 312 SVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 312 AVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 351 (598)
.+.+.. . ..+.+.|++.+.|..+++|++|+++..
T Consensus 120 ~v~~D~----~--~~~~~~~~v~~~P~~~~id~~G~i~~~ 153 (173)
T TIGR00385 120 AILIDP----N--GKLGLDLGVYGAPETFLVDGNGVILYR 153 (173)
T ss_pred eEEECC----C--CchHHhcCCeeCCeEEEEcCCceEEEE
Confidence 554422 1 235567899999999999999998854
No 30
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=97.98 E-value=3e-05 Score=93.32 Aligned_cols=105 Identities=16% Similarity=0.143 Sum_probs=74.4
Q ss_pred CCceeec-ceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHH---HHHHhh
Q 039432 231 KSEQLGV-SELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEER---NFELFS 305 (598)
Q Consensus 231 ~~~kV~I-s~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~---~Fe~~~ 305 (598)
+|..+.+ ++++||.|+|.|.|.|| +|..+.+. |+++|++.+ +..|+||-|+.+..+. +++.+ +|- ..
T Consensus 408 ~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~-L~~l~~~y~----~~~~~vvgV~~~~~D~--~~~~~~~~~~~-~~ 479 (1057)
T PLN02919 408 NTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPD-LEFLEKKYK----DQPFTVVGVHSAKFDN--EKDLEAIRNAV-LR 479 (1057)
T ss_pred CCccccchhhcCCCEEEEEEECCcChhHHhHhHH-HHHHHHHcC----CCCeEEEEEecccccc--cccHHHHHHHH-HH
Confidence 4556766 57999999999999998 67788888 999999873 3469999998521111 12222 332 24
Q ss_pred cCCCeeeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceec
Q 039432 306 CSLPWYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTN 350 (598)
Q Consensus 306 ~~MPWyAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 350 (598)
..++|..+.-.. . .+-+.|+++++|+.+++|++|+++.
T Consensus 480 ~~i~~pvv~D~~---~----~~~~~~~V~~iPt~ilid~~G~iv~ 517 (1057)
T PLN02919 480 YNISHPVVNDGD---M----YLWRELGVSSWPTFAVVSPNGKLIA 517 (1057)
T ss_pred hCCCccEEECCc---h----HHHHhcCCCccceEEEECCCCeEEE
Confidence 566776554321 2 3456789999999999999999974
No 31
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.98 E-value=2.1e-05 Score=71.76 Aligned_cols=106 Identities=11% Similarity=0.181 Sum_probs=71.2
Q ss_pred cCCceeecceecC-cEEEEEE-ecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhc
Q 039432 230 MKSEQLGVSELKD-KVVILLV-SKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSC 306 (598)
Q Consensus 230 ~~~~kV~Is~L~g-K~VlLyf-Sal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~ 306 (598)
.+|..+++++++| |.+.|+| .+.|| +|...++. |.++|+++. +.++.+|.|+.|. .+..++|-.-+
T Consensus 15 ~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~-l~~~~~~~~----~~~v~vi~vs~d~-----~~~~~~~~~~~- 83 (149)
T cd03018 15 QNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCA-LRDSLELFE----AAGAEVLGISVDS-----PFSLRAWAEEN- 83 (149)
T ss_pred CCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHH-HHHHHHHHH----hCCCEEEEecCCC-----HHHHHHHHHhc-
Confidence 4577899999999 8777666 48997 56677888 999999983 3468899999731 22344454332
Q ss_pred CCCeeeeecCCcccHHHHHHHHHhhccC----Cc--cEEEEeCCCCceech
Q 039432 307 SLPWYSVRQPQLLNSAVVNLIKQEWNFK----EE--PIMVVLDSQGMVTNS 351 (598)
Q Consensus 307 ~MPWyAVp~~~~i~~~~~r~ike~~~~~----~i--P~LVvL~pqGkv~~~ 351 (598)
..+|..+- |....+.+.+.|++. ++ |+.+++|++|+++-.
T Consensus 84 ~~~~~~~~-----D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~ 129 (149)
T cd03018 84 GLTFPLLS-----DFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYA 129 (149)
T ss_pred CCCceEec-----CCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEE
Confidence 34554332 221124455667776 33 389999999998865
No 32
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.96 E-value=4.7e-05 Score=77.56 Aligned_cols=117 Identities=15% Similarity=0.271 Sum_probs=75.5
Q ss_pred cCCceeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCC-CC--ChHhHHHHH--H
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSE-TW--TDVEERNFE--L 303 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~-~W--~D~de~~Fe--~ 303 (598)
.+|..|.+++++||.|+|.|-+.|| +|..+++. |+++|++.+ +.+++||-|+.|... .- +.++.++|- .
T Consensus 87 ~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~-L~~L~~~~~----~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~ 161 (236)
T PLN02399 87 IDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSE-LSHLYEKYK----TQGFEILAFPCNQFGGQEPGSNPEIKQFACTR 161 (236)
T ss_pred CCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHH-HHHHHHHHh----cCCcEEEEEecccccccCCCCHHHHHHHHHHh
Confidence 4677899999999999999999998 56678888 999999873 346999999973111 11 123345552 3
Q ss_pred hhcCCCeeeeecCC-cccHHHHHHHHHhhc------cCCccEEEEeCCCCceech
Q 039432 304 FSCSLPWYSVRQPQ-LLNSAVVNLIKQEWN------FKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 304 ~~~~MPWyAVp~~~-~i~~~~~r~ike~~~------~~~iP~LVvL~pqGkv~~~ 351 (598)
+....|-++=.-.. ..-.+..++++..+. ++..|+-+++|++|+++..
T Consensus 162 ~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~ 216 (236)
T PLN02399 162 FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVER 216 (236)
T ss_pred cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEE
Confidence 33344432100000 001123455544332 3567999999999999964
No 33
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.92 E-value=7e-05 Score=69.84 Aligned_cols=113 Identities=12% Similarity=0.197 Sum_probs=72.9
Q ss_pred cCCceeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCC---CCCCChHhHHHHHHhh
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISS---SETWTDVEERNFELFS 305 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~---~~~W~D~de~~Fe~~~ 305 (598)
.+|..+.+++++||.|+|+|-+.|| +|..+++. |.++|++.. ..+++||-||.+. +++=+.++.++|-+-.
T Consensus 10 ~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~-l~~l~~~~~----~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~ 84 (153)
T TIGR02540 10 ARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRA-LQELHRELG----PSHFNVLAFPCNQFGESEPDSSKEIESFARRN 84 (153)
T ss_pred CCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHH-HHHHHHHHh----hCCeEEEEEeccccccCCCCCHHHHHHHHHHh
Confidence 4677999999999999999999998 56688888 999999983 3469999998511 1100122344554321
Q ss_pred cCCCeeeee-----cCCcccHHHHHHHHHhhccCCccE----EEEeCCCCceech
Q 039432 306 CSLPWYSVR-----QPQLLNSAVVNLIKQEWNFKEEPI----MVVLDSQGMVTNS 351 (598)
Q Consensus 306 ~~MPWyAVp-----~~~~i~~~~~r~ike~~~~~~iP~----LVvL~pqGkv~~~ 351 (598)
...++..+. -++ -....+++.+ +..+.|. ..++|++|+++..
T Consensus 85 ~~~~fp~~~d~~~~~~~--~~~~~~~~~~--~~~~~p~~~~~tflID~~G~v~~~ 135 (153)
T TIGR02540 85 YGVTFPMFSKIKILGSE--AEPAFRFLVD--SSKKEPRWNFWKYLVNPEGQVVKF 135 (153)
T ss_pred cCCCCCccceEecCCCC--CCcHHHHHHh--cCCCCCCCccEEEEEcCCCcEEEE
Confidence 233332221 111 1123455543 3456898 9999999999863
No 34
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.92 E-value=3.5e-05 Score=75.68 Aligned_cols=104 Identities=9% Similarity=0.139 Sum_probs=74.7
Q ss_pred eeecceecCcEEEEEEe-cCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCee
Q 039432 234 QLGVSELKDKVVILLVS-KPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWY 311 (598)
Q Consensus 234 kV~Is~L~gK~VlLyfS-al~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWy 311 (598)
.+.+++++||.|.|+|= +.|| +|..++.. |.+.|+++. +.+.+|+-||.|. -...+.|-+-...+ .
T Consensus 23 ~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~-l~~~~~~f~----~~g~~vigIS~D~-----~~~~~a~~~~~~~~--~ 90 (187)
T PRK10382 23 EVTEKDTEGRWSVFFFYPADFTFVCPTELGD-VADHYEELQ----KLGVDVYSVSTDT-----HFTHKAWHSSSETI--A 90 (187)
T ss_pred EEEHHHhCCCeEEEEEECCCCCCcCHHHHHH-HHHHHHHHH----hCCCEEEEEeCCC-----HHHHHHHHHhhccc--c
Confidence 67888999999999887 8885 68899999 999999983 3469999999842 23455565433222 2
Q ss_pred eeecCCcccHHHHHHHHHhhcc----CCc--cEEEEeCCCCceech
Q 039432 312 SVRQPQLLNSAVVNLIKQEWNF----KEE--PIMVVLDSQGMVTNS 351 (598)
Q Consensus 312 AVp~~~~i~~~~~r~ike~~~~----~~i--P~LVvL~pqGkv~~~ 351 (598)
.++||=+.|. -+.+.+.|++ .+. |..+|+||+|++...
T Consensus 91 ~l~fpllsD~--~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~ 134 (187)
T PRK10382 91 KIKYAMIGDP--TGALTRNFDNMREDEGLADRATFVVDPQGIIQAI 134 (187)
T ss_pred CCceeEEEcC--chHHHHHcCCCcccCCceeeEEEEECCCCEEEEE
Confidence 3455433332 4567777787 466 999999999998654
No 35
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.89 E-value=3.2e-05 Score=75.16 Aligned_cols=102 Identities=9% Similarity=0.142 Sum_probs=71.7
Q ss_pred eeecceecCcEEEEEEe-cCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhh---cCC
Q 039432 234 QLGVSELKDKVVILLVS-KPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFS---CSL 308 (598)
Q Consensus 234 kV~Is~L~gK~VlLyfS-al~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~---~~M 308 (598)
.+..++++||.|+|+|= +.|| +|..+++. |.+.|+++. +.+++||.||.|. ....+.|.... ..+
T Consensus 23 ~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~-l~~~~~~~~----~~gv~vi~VS~D~-----~~~~~~~~~~~~~~~~l 92 (187)
T TIGR03137 23 EVTDEDVKGKWSVFFFYPADFTFVCPTELED-LADKYAELK----KLGVEVYSVSTDT-----HFVHKAWHDTSEAIGKI 92 (187)
T ss_pred EecHHHHCCCEEEEEEECCCcCCcCHHHHHH-HHHHHHHHH----hcCCcEEEEeCCC-----HHHHHHHHhhhhhccCc
Confidence 57788999999999998 8886 67889999 999999984 3478999999832 22344554322 244
Q ss_pred CeeeeecCCcccHHHHHHHHHhhccC------CccEEEEeCCCCceechh
Q 039432 309 PWYSVRQPQLLNSAVVNLIKQEWNFK------EEPIMVVLDSQGMVTNSN 352 (598)
Q Consensus 309 PWyAVp~~~~i~~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~n 352 (598)
|+..+ .|. -..+.+.|++. ..|...|+|++|++....
T Consensus 93 ~fpll-----sD~--~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~ 135 (187)
T TIGR03137 93 TYPML-----GDP--TGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVE 135 (187)
T ss_pred ceeEE-----ECC--ccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEE
Confidence 43222 232 24555666765 369999999999998653
No 36
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.86 E-value=4.9e-05 Score=69.37 Aligned_cols=105 Identities=8% Similarity=0.048 Sum_probs=70.1
Q ss_pred cCCceeecceecCcEEEEEEecCC-C-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcC
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPE-L-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCS 307 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~-~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~ 307 (598)
.+|+.+++++++||.|.|+|=+.| | +|..+++. |.+.|++. .+++||-|+.|. ....++|.+-.
T Consensus 14 ~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~-l~~~~~~~------~~~~vi~Is~d~-----~~~~~~~~~~~-- 79 (143)
T cd03014 14 SDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKR-FNKEAAKL------DNTVVLTISADL-----PFAQKRWCGAE-- 79 (143)
T ss_pred CCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHH-HHHHHHhc------CCCEEEEEECCC-----HHHHHHHHHhc--
Confidence 456789999999999999999988 5 47788888 99999985 158888888721 22334554433
Q ss_pred CCeeeeecCCcccHHHHHHHHHhhccCC------ccEEEEeCCCCceechh
Q 039432 308 LPWYSVRQPQLLNSAVVNLIKQEWNFKE------EPIMVVLDSQGMVTNSN 352 (598)
Q Consensus 308 MPWyAVp~~~~i~~~~~r~ike~~~~~~------iP~LVvL~pqGkv~~~n 352 (598)
....+|.-+ |.. .+.+.+.|++.. .|...++|++|+++...
T Consensus 80 -~~~~~~~l~--D~~-~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~ 126 (143)
T cd03014 80 -GVDNVTTLS--DFR-DHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVE 126 (143)
T ss_pred -CCCCceEee--cCc-ccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEE
Confidence 221122211 211 133445556643 68999999999998654
No 37
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.86 E-value=6.6e-05 Score=74.06 Aligned_cols=113 Identities=13% Similarity=0.169 Sum_probs=73.7
Q ss_pred cCCceeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCC-CC-CCC-hHhHHHHHHhh
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISS-SE-TWT-DVEERNFELFS 305 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~-~~-~W~-D~de~~Fe~~~ 305 (598)
.+|..|.++.++||.|+|.|=+.|| +|..+.+. |.++|++.. +.+++||-||+|. .+ +.. .++-++|-. .
T Consensus 27 ~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~-L~~l~~~~~----~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~-~ 100 (199)
T PTZ00056 27 LEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQ-MNRLHSVFN----PLGLEILAFPTSQFLNQEFPNTKDIRKFND-K 100 (199)
T ss_pred CCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHH-HHHHHHHHh----cCceEEEEecchhccCCCCCCHHHHHHHHH-H
Confidence 4677999999999999999999998 55578888 999999973 3469999999721 11 111 233444543 2
Q ss_pred cCCCeeeee-----cCCcccHHHHHHHHH----hhccCCc-------cEEEEeCCCCceec
Q 039432 306 CSLPWYSVR-----QPQLLNSAVVNLIKQ----EWNFKEE-------PIMVVLDSQGMVTN 350 (598)
Q Consensus 306 ~~MPWyAVp-----~~~~i~~~~~r~ike----~~~~~~i-------P~LVvL~pqGkv~~ 350 (598)
..++|..+- -.. ..++.+++++ .++..+. |+-+++|++|+++.
T Consensus 101 ~~~~fpvl~d~~v~g~~--~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~ 159 (199)
T PTZ00056 101 NKIKYNFFEPIEVNGEN--THELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVA 159 (199)
T ss_pred cCCCceeeeeeeccCCc--cCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEE
Confidence 345554321 001 1245555553 2333333 37899999999984
No 38
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.72 E-value=0.00031 Score=67.09 Aligned_cols=105 Identities=11% Similarity=0.070 Sum_probs=74.5
Q ss_pred cCCceeecceecCcEEEEEEecCC-C-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcC
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPE-L-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCS 307 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~-~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~ 307 (598)
.+|..|.+++++||.|.|+|=+.| | +|..+++. |.+.|+++ .+++||=||.|. ....++|-+-..
T Consensus 32 ~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~-l~~~~~~~------~~~~vv~vs~D~-----~~~~~~f~~~~~- 98 (167)
T PRK00522 32 NDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRK-FNQEAAEL------DNTVVLCISADL-----PFAQKRFCGAEG- 98 (167)
T ss_pred CCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHH-HHHHHHHc------CCcEEEEEeCCC-----HHHHHHHHHhCC-
Confidence 456689999999999999999999 6 58899998 99999886 268999998732 234566665432
Q ss_pred CCeeeeecCCcccHHHHHHHHHhhccCCcc---------EEEEeCCCCceechh
Q 039432 308 LPWYSVRQPQLLNSAVVNLIKQEWNFKEEP---------IMVVLDSQGMVTNSN 352 (598)
Q Consensus 308 MPWyAVp~~~~i~~~~~r~ike~~~~~~iP---------~LVvL~pqGkv~~~n 352 (598)
.+- .|. +.|. .-+.+.+.|++.+.| ...++|++|+++...
T Consensus 99 ~~~--~~~--lsD~-~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~ 147 (167)
T PRK00522 99 LEN--VIT--LSDF-RDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSE 147 (167)
T ss_pred CCC--ceE--eecC-CccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEE
Confidence 331 111 1121 123455677887777 999999999998655
No 39
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.70 E-value=8.3e-05 Score=67.32 Aligned_cols=103 Identities=16% Similarity=0.112 Sum_probs=66.5
Q ss_pred cCCceeecceec--CcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhc
Q 039432 230 MKSEQLGVSELK--DKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSC 306 (598)
Q Consensus 230 ~~~~kV~Is~L~--gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~ 306 (598)
.+|..++++++. +++|++||-+.|| +|.++++. |.+.|+++. +.+++||-|+.|. ......|-+- .
T Consensus 10 ~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~-l~~~~~~~~----~~~v~vv~V~~~~-----~~~~~~~~~~-~ 78 (149)
T cd02970 10 AGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRA-LSKLLPELD----ALGVELVAVGPES-----PEKLEAFDKG-K 78 (149)
T ss_pred CCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHH-HHHHHHHHH----hcCeEEEEEeCCC-----HHHHHHHHHh-c
Confidence 456789998875 3455666678997 56788888 999999983 3469999999731 1122233321 1
Q ss_pred CCCeeeeecCCcccHHHHHHHHHhhccC-----------------------------CccEEEEeCCCCceec
Q 039432 307 SLPWYSVRQPQLLNSAVVNLIKQEWNFK-----------------------------EEPIMVVLDSQGMVTN 350 (598)
Q Consensus 307 ~MPWyAVp~~~~i~~~~~r~ike~~~~~-----------------------------~iP~LVvL~pqGkv~~ 350 (598)
..||.. ..|.. +.+.+.|++. ..|..+|+|++|++.-
T Consensus 79 ~~~~p~-----~~D~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~ 144 (149)
T cd02970 79 FLPFPV-----YADPD--RKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILF 144 (149)
T ss_pred CCCCeE-----EECCc--hhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEE
Confidence 223322 22322 3344555663 7999999999999874
No 40
>PRK13190 putative peroxiredoxin; Provisional
Probab=97.60 E-value=0.00015 Score=71.66 Aligned_cols=100 Identities=14% Similarity=0.169 Sum_probs=68.9
Q ss_pred eeecceecCcEEEE-EEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHH----HHHhhc-
Q 039432 234 QLGVSELKDKVVIL-LVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERN----FELFSC- 306 (598)
Q Consensus 234 kV~Is~L~gK~VlL-yfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~----Fe~~~~- 306 (598)
.+++++++||.|.| +|-+.|| +|..++.. |.+.|++++ +.+++||-||.|. ...... |.+-..
T Consensus 19 ~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~-l~~~~~~f~----~~~~~vi~vS~D~-----~~~~~~w~~~~~~~~g~ 88 (202)
T PRK13190 19 PIDLSKYKGKWVLLFSHPADFTPVCTTEFIA-FSRRYEDFK----KLGVELVGLSVDS-----IYSHIAWLRDIEERFGI 88 (202)
T ss_pred cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHH-HHHHHHHHH----HCCCEEEEEeCCC-----HHHHHHHHHhHHHhcCC
Confidence 68999999998777 5788886 67899998 999999984 3469999999832 112222 222222
Q ss_pred CCCeeeeecCCcccHHHHHHHHHhhccC------CccEEEEeCCCCceec
Q 039432 307 SLPWYSVRQPQLLNSAVVNLIKQEWNFK------EEPIMVVLDSQGMVTN 350 (598)
Q Consensus 307 ~MPWyAVp~~~~i~~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~ 350 (598)
.+|+-.+- |.. +.+.+.|++. ..|..+++||+|++..
T Consensus 89 ~~~fPll~-----D~~--~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~ 131 (202)
T PRK13190 89 KIPFPVIA-----DID--KELAREYNLIDENSGATVRGVFIIDPNQIVRW 131 (202)
T ss_pred CceEEEEE-----CCC--hHHHHHcCCccccCCcEEeEEEEECCCCEEEE
Confidence 23443332 322 3455667774 4899999999999874
No 41
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.55 E-value=0.00019 Score=67.18 Aligned_cols=74 Identities=14% Similarity=0.068 Sum_probs=54.3
Q ss_pred ecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCc
Q 039432 240 LKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQL 318 (598)
Q Consensus 240 L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~ 318 (598)
-+||.|+|+|.+.|| +|..+.+. |.+++++.. +.+.++.|-+ |.++ +
T Consensus 18 ~~gk~vvV~F~A~WC~~C~~~~p~-l~~l~~~~~-----~~~~~v~v~v-------d~~~--~----------------- 65 (142)
T cd02950 18 SNGKPTLVEFYADWCTVCQEMAPD-VAKLKQKYG-----DQVNFVMLNV-------DNPK--W----------------- 65 (142)
T ss_pred hCCCEEEEEEECCcCHHHHHhHHH-HHHHHHHhc-----cCeeEEEEEc-------CCcc--c-----------------
Confidence 468999999999998 45566666 888887752 3477788776 2111 1
Q ss_pred ccHHHHHHHHHhhccCCccEEEEeCCCCceech
Q 039432 319 LNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 319 i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 351 (598)
..+.+.|+++++|++++++++|+++..
T Consensus 66 ------~~~~~~~~V~~iPt~v~~~~~G~~v~~ 92 (142)
T cd02950 66 ------LPEIDRYRVDGIPHFVFLDREGNEEGQ 92 (142)
T ss_pred ------HHHHHHcCCCCCCEEEEECCCCCEEEE
Confidence 013467899999999999999998853
No 42
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.54 E-value=0.00022 Score=69.86 Aligned_cols=108 Identities=13% Similarity=0.182 Sum_probs=69.9
Q ss_pred CCceeecceecCcEEEEEEecCC-C-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHH-hhcC
Q 039432 231 KSEQLGVSELKDKVVILLVSKPE-L-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFEL-FSCS 307 (598)
Q Consensus 231 ~~~kV~Is~L~gK~VlLyfSal~-~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~-~~~~ 307 (598)
++.++.+++++||.|+|+|-..+ | +|..++.. |.+.|+++. +.+++||.||.|. ......+.. ....
T Consensus 25 ~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~-l~~~~~~f~----~~g~~vv~IS~d~-----~~~~~~~~~~~~~~ 94 (199)
T PTZ00253 25 SFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQ-FSDSVKRFN----ELNCEVLACSMDS-----EYAHLQWTLQERKK 94 (199)
T ss_pred CCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHH-HHHHHHHHH----HcCCEEEEEeCCC-----HHHHHHHHhChHhh
Confidence 34589999999999999998755 5 67788877 999999984 3579999999832 222222211 1110
Q ss_pred CCeeeeecCCcccHHHHHHHHHhhccC----C--ccEEEEeCCCCceec
Q 039432 308 LPWYSVRQPQLLNSAVVNLIKQEWNFK----E--EPIMVVLDSQGMVTN 350 (598)
Q Consensus 308 MPWyAVp~~~~i~~~~~r~ike~~~~~----~--iP~LVvL~pqGkv~~ 350 (598)
.=.-.++||-..|. .+.+.+.|++. + .|..+||||+|++..
T Consensus 95 ~~~~~~~fpll~D~--~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~ 141 (199)
T PTZ00253 95 GGLGTMAIPMLADK--TKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQ 141 (199)
T ss_pred CCccccccceEECc--HhHHHHHcCCcccCCCceEEEEEEECCCCEEEE
Confidence 00112344333332 34555666764 3 589999999999775
No 43
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=97.44 E-value=0.00061 Score=65.80 Aligned_cols=111 Identities=9% Similarity=0.169 Sum_probs=77.4
Q ss_pred ccCCceeecceecCcEEEEEEecCCC--CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCCh--HhHHHHHHh
Q 039432 229 AMKSEQLGVSELKDKVVILLVSKPEL--LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTD--VEERNFELF 304 (598)
Q Consensus 229 ~~~~~kV~Is~L~gK~VlLyfSal~~--~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D--~de~~Fe~~ 304 (598)
..+|..|..++|+||.++++|--..| .|+..+.. |.++.+++.. .+.++++|+||+|+ ..| +.-++|-..
T Consensus 39 d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~-l~~~~~~l~~--~~~~v~~v~ISvDP---~~DTp~~L~~Y~~~ 112 (174)
T PF02630_consen 39 DQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLAN-LSQLQKQLGE--EGKDVQFVFISVDP---ERDTPEVLKKYAKK 112 (174)
T ss_dssp ETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHH-HHHHHHHHHH--TTTTEEEEEEESST---TTC-HHHHHHHHHC
T ss_pred cCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHH-HHHHHHHhhh--ccCceEEEEEEeCC---CCCCHHHHHHHHHh
Confidence 46777899999999999999988886 35555666 8999999942 26789999999843 434 335566665
Q ss_pred hcCCCeeeeecCCcccHHHHHHHHHhhccC----------------CccEEEEeCCCCceec
Q 039432 305 SCSLPWYSVRQPQLLNSAVVNLIKQEWNFK----------------EEPIMVVLDSQGMVTN 350 (598)
Q Consensus 305 ~~~MPWyAVp~~~~i~~~~~r~ike~~~~~----------------~iP~LVvL~pqGkv~~ 350 (598)
+.. .|..+-+ +.+.++.+.+.|++. .-..+.++||+|++..
T Consensus 113 ~~~-~~~~ltg----~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~ 169 (174)
T PF02630_consen 113 FGP-DFIGLTG----SREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRA 169 (174)
T ss_dssp HTT-TCEEEEE----EHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEE
T ss_pred cCC-CcceeEe----CHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEE
Confidence 543 5666665 245566666666542 2347889999999874
No 44
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=97.41 E-value=0.00041 Score=71.81 Aligned_cols=102 Identities=15% Similarity=0.207 Sum_probs=71.0
Q ss_pred eeeccee-cCcEEEEEEe-cCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHh-h----
Q 039432 234 QLGVSEL-KDKVVILLVS-KPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELF-S---- 305 (598)
Q Consensus 234 kV~Is~L-~gK~VlLyfS-al~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~-~---- 305 (598)
+++++++ +||.|.|||= +.|| +|..+++. |.+.|++.+ +.++||+-||+|. -...+.|.+. .
T Consensus 89 ~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~-l~~~~~ef~----~~gv~VigIS~Ds-----~~~h~aw~~~~~~~~g 158 (261)
T PTZ00137 89 QFNSSDYFKDSYGLLVFYPLDFTFVCPSELLG-FSERLKEFE----ERGVKVLGVSVDS-----PFSHKAWKELDVRQGG 158 (261)
T ss_pred EEeHHHHcCCCeEEEEEECCCCCCCCHHHHHH-HHHHHHHHH----HCCCEEEEEECCC-----HHHHHHHHhhhhhhcc
Confidence 6899997 8988777776 7775 78899999 999999983 3469999999832 1234455442 1
Q ss_pred -cCCCeeeeecCCcccHHHHHHHHHhhccC-----CccEEEEeCCCCceechh
Q 039432 306 -CSLPWYSVRQPQLLNSAVVNLIKQEWNFK-----EEPIMVVLDSQGMVTNSN 352 (598)
Q Consensus 306 -~~MPWyAVp~~~~i~~~~~r~ike~~~~~-----~iP~LVvL~pqGkv~~~n 352 (598)
..+|+.-+- |.. +.+.+.|++. ..|...|+||+|++....
T Consensus 159 ~~~l~fPlLs-----D~~--~~iakayGv~~~~g~a~R~tFIID~dG~I~~~~ 204 (261)
T PTZ00137 159 VSPLKFPLFS-----DIS--REVSKSFGLLRDEGFSHRASVLVDKAGVVKHVA 204 (261)
T ss_pred ccCcceEEEE-----cCC--hHHHHHcCCCCcCCceecEEEEECCCCEEEEEE
Confidence 234433322 222 4566677774 489999999999987643
No 45
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=97.39 E-value=0.00025 Score=73.39 Aligned_cols=87 Identities=11% Similarity=0.129 Sum_probs=62.5
Q ss_pred eeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeee
Q 039432 234 QLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYS 312 (598)
Q Consensus 234 kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyA 312 (598)
...++.|+||.++++|.+.|| +|+.+.+. |.+++++- .++|+.|++|. +.. ..+|-+
T Consensus 158 ~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~-L~~la~~y-------g~~Vi~VsvD~-------~~~------~~fp~~- 215 (271)
T TIGR02740 158 DRVMKDLAKKSGLFFFFKSDCPYCHQQAPI-LQAFEDRY-------GIEVLPVSVDG-------GPL------PGFPNA- 215 (271)
T ss_pred HHHHHHhcCCeEEEEEECCCCccHHHHhHH-HHHHHHHc-------CcEEEEEeCCC-------Ccc------ccCCcc-
Confidence 578889999999999999998 56677777 88888774 28999999832 211 112221
Q ss_pred eecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceech
Q 039432 313 VRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 313 Vp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 351 (598)
-. + +.+.+.|+++++|++++++++|+.+..
T Consensus 216 --~~---d----~~la~~~gV~~vPtl~Lv~~~~~~v~~ 245 (271)
T TIGR02740 216 --RP---D----AGQAQQLKIRTVPAVFLADPDPNQFTP 245 (271)
T ss_pred --cC---C----HHHHHHcCCCcCCeEEEEECCCCEEEE
Confidence 11 1 235678899999999999997655443
No 46
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=97.37 E-value=0.00039 Score=66.37 Aligned_cols=85 Identities=6% Similarity=0.060 Sum_probs=56.2
Q ss_pred cceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeec
Q 039432 237 VSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQ 315 (598)
Q Consensus 237 Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~ 315 (598)
-....++.++|+|-+.|| +|+.+.+. |.++|++. .++|+.|++|. ...+.| | +.+
T Consensus 45 ~~~~l~~~~lvnFWAsWCppCr~e~P~-L~~l~~~~-------~~~Vi~Vs~d~------~~~~~f-------p---~~~ 100 (153)
T TIGR02738 45 RHANQDDYALVFFYQSTCPYCHQFAPV-LKRFSQQF-------GLPVYAFSLDG------QGLTGF-------P---DPL 100 (153)
T ss_pred hhhhcCCCEEEEEECCCChhHHHHHHH-HHHHHHHc-------CCcEEEEEeCC------Cccccc-------c---ccc
Confidence 333445667999999998 67788888 99999874 38899999831 111111 1 222
Q ss_pred CCcccHHHHHHHHHhh---ccCCccEEEEeCCCCceec
Q 039432 316 PQLLNSAVVNLIKQEW---NFKEEPIMVVLDSQGMVTN 350 (598)
Q Consensus 316 ~~~i~~~~~r~ike~~---~~~~iP~LVvL~pqGkv~~ 350 (598)
+. +. ..+...+ ++.++|+.+++|++|+++-
T Consensus 101 ~~--~~---~~~~~~~~~~~v~~iPTt~LID~~G~~i~ 133 (153)
T TIGR02738 101 PA--TP---EVMQTFFPNPRPVVTPATFLVNVNTRKAY 133 (153)
T ss_pred CC--ch---HHHHHHhccCCCCCCCeEEEEeCCCCEEE
Confidence 21 11 1233445 7899999999999988643
No 47
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=97.35 E-value=0.00044 Score=68.09 Aligned_cols=87 Identities=8% Similarity=0.121 Sum_probs=64.0
Q ss_pred cCCceeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCC
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSL 308 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~M 308 (598)
.+|..+.++.++ +++|-+.|| +|..+.+. |+++|++. .|+|+-|++| .+.+
T Consensus 61 ~dG~~v~lsd~~----lV~FwaswCp~C~~e~P~-L~~l~~~~-------g~~Vi~Vs~D-------~~~~--------- 112 (181)
T PRK13728 61 SNGRQVNLADWK----VVLFMQGHCPYCHQFDPV-LKQLAQQY-------GFSVFPYTLD-------GQGD--------- 112 (181)
T ss_pred CCCCEeehhHce----EEEEECCCCHhHHHHHHH-HHHHHHHc-------CCEEEEEEeC-------CCCC---------
Confidence 577799999997 667888998 56788888 99999985 2899999982 1211
Q ss_pred CeeeeecCCccc-HHHHHHHHHhhcc--CCccEEEEeCCCCceec
Q 039432 309 PWYSVRQPQLLN-SAVVNLIKQEWNF--KEEPIMVVLDSQGMVTN 350 (598)
Q Consensus 309 PWyAVp~~~~i~-~~~~r~ike~~~~--~~iP~LVvL~pqGkv~~ 350 (598)
+.||-.++ .. ..+.+.|+. .++|+.+++|++|+++-
T Consensus 113 ----~~fPv~~dd~~--~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 113 ----TAFPEALPAPP--DVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred ----CCCceEecCch--hHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 34554442 22 345667784 69999999999999863
No 48
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=97.35 E-value=0.00031 Score=64.96 Aligned_cols=83 Identities=12% Similarity=0.103 Sum_probs=50.1
Q ss_pred cCcEEEEEEecCCCCChhhhhHHHHHHhcCcCC-CCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPELLPLEKLFLLVHQTYDHPHN-KNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~-~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
++|.|+|+|++.||+.|..+-. .+|...+- ....++| |+|-+|. |+.. + +
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~---~~f~~~~V~~~l~~~f--v~VkvD~-----~~~~------------------~-~ 64 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEH---ESFEDEEVAAILNENF--VPIKVDR-----EERP------------------D-V 64 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHH---HccCCHHHHHHHhCCE--EEEEEeC-----CcCc------------------H-H
Confidence 5899999999999865553322 23333200 0112345 4444532 1111 0 0
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCceechh
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNSN 352 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n 352 (598)
.....++....+++.|.|++|+|+|+|++++..
T Consensus 65 ~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 65 DKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred HHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 112344555678999999999999999999776
No 49
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=97.34 E-value=0.00066 Score=66.92 Aligned_cols=106 Identities=6% Similarity=-0.013 Sum_probs=70.1
Q ss_pred ceeecceecC-cEEE-EEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHH-hhcCC
Q 039432 233 EQLGVSELKD-KVVI-LLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFEL-FSCSL 308 (598)
Q Consensus 233 ~kV~Is~L~g-K~Vl-LyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~-~~~~M 308 (598)
+++.+++++| |.|. ++|-+.|| .|..++.. |.+.|++++ +.+.+|+-||+|. ....++|-+ ..+.+
T Consensus 15 g~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~-l~~~~~~f~----~~gv~vigvS~D~-----~~~~~~~~~~i~~~~ 84 (203)
T cd03016 15 GPIKFHDYLGDSWGILFSHPADFTPVCTTELGA-FAKLAPEFK----KRNVKLIGLSVDS-----VESHIKWIEDIEEYT 84 (203)
T ss_pred CcEeHHHHcCCCEEEEEEecCCCCCcCHHHHHH-HHHHHHHHH----HcCCEEEEEECCC-----HHHHHHHHhhHHHhc
Confidence 3688999998 6554 46777786 57788888 999999984 3468999999832 222333432 22222
Q ss_pred CeeeeecCCcccHHHHHHHHHhhccC----Cc----cEEEEeCCCCceech
Q 039432 309 PWYSVRQPQLLNSAVVNLIKQEWNFK----EE----PIMVVLDSQGMVTNS 351 (598)
Q Consensus 309 PWyAVp~~~~i~~~~~r~ike~~~~~----~i----P~LVvL~pqGkv~~~ 351 (598)
. +.++||-..|.. +.+.+.|++. +. |..+|+||+|++...
T Consensus 85 ~-~~~~fpil~D~~--~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~ 132 (203)
T cd03016 85 G-VEIPFPIIADPD--REVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLI 132 (203)
T ss_pred C-CCCceeEEECch--HHHHHHcCCccccCCCCceeeEEEEECCCCeEEEE
Confidence 3 456665443433 4566677764 33 469999999998743
No 50
>PRK15000 peroxidase; Provisional
Probab=97.30 E-value=0.00076 Score=66.73 Aligned_cols=103 Identities=13% Similarity=0.182 Sum_probs=69.6
Q ss_pred Cceeeccee----cCcEEEEEEecC-CC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHH-h
Q 039432 232 SEQLGVSEL----KDKVVILLVSKP-EL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFEL-F 304 (598)
Q Consensus 232 ~~kV~Is~L----~gK~VlLyfSal-~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~-~ 304 (598)
|..+....| +||.|.|+|=.. || +|..+++. |.+.|++++ +.+++|+=||.|. ....+.|.+ +
T Consensus 20 g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~-l~~~~~~f~----~~g~~vigvS~D~-----~~~~~~w~~~~ 89 (200)
T PRK15000 20 GEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIA-FDKRYEEFQ----KRGVEVVGVSFDS-----EFVHNAWRNTP 89 (200)
T ss_pred CceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHH-HHHHHHHHH----HCCCEEEEEECCC-----HHHHHHHHhhH
Confidence 444444444 799999999987 45 68899999 999999984 3469999999831 222344432 1
Q ss_pred ---hc--CCCeeeeecCCcccHHHHHHHHHhhccC------CccEEEEeCCCCceech
Q 039432 305 ---SC--SLPWYSVRQPQLLNSAVVNLIKQEWNFK------EEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 305 ---~~--~MPWyAVp~~~~i~~~~~r~ike~~~~~------~iP~LVvL~pqGkv~~~ 351 (598)
.. .+|+..+-- .. +.+.+.|++. ..|..+++||+|++...
T Consensus 90 ~~~~g~~~i~fpllsD-----~~--~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~ 140 (200)
T PRK15000 90 VDKGGIGPVKYAMVAD-----VK--REIQKAYGIEHPDEGVALRGSFLIDANGIVRHQ 140 (200)
T ss_pred HHhCCccccCceEEEC-----CC--cHHHHHcCCccCCCCcEEeEEEEECCCCEEEEE
Confidence 11 234443332 22 4566677876 69999999999998864
No 51
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.27 E-value=0.00032 Score=61.17 Aligned_cols=94 Identities=15% Similarity=0.273 Sum_probs=52.7
Q ss_pred cCcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCccc
Q 039432 241 KDKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLN 320 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~ 320 (598)
+||+++++|++.||+-|..+...+.+.-+ +. ...++++.++.+.++ .++ ...+.-+...=+ +++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~----~~~---- 67 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDND-VA-RYLKDDFQVIFVNID-----DSR-DESEAVLDFDGQ----KNV---- 67 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHH-HH-CEEHCECEEEECESH-----SHH-HHHHHHHSHTCH----SSC----
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHH-HH-HHhhcCeEEEEEecC-----Ccc-cccccccccccc----hhh----
Confidence 58999999999998655544332433222 21 012346888888871 122 122221110000 111
Q ss_pred HHHHHHHHHhhccCCccEEEEeCCCCceec
Q 039432 321 SAVVNLIKQEWNFKEEPIMVVLDSQGMVTN 350 (598)
Q Consensus 321 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 350 (598)
....+.+.+.|++++-|+++++|++|+++.
T Consensus 68 ~~~~~~l~~~~~v~gtPt~~~~d~~G~~v~ 97 (112)
T PF13098_consen 68 RLSNKELAQRYGVNGTPTIVFLDKDGKIVY 97 (112)
T ss_dssp HHHHHHHHHHTT--SSSEEEECTTTSCEEE
T ss_pred hHHHHHHHHHcCCCccCEEEEEcCCCCEEE
Confidence 234557889999999999999999999763
No 52
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.15 E-value=0.0011 Score=57.43 Aligned_cols=74 Identities=5% Similarity=0.001 Sum_probs=48.4
Q ss_pred cCcEEEEEEecCCCCChhhhhHHH---HHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCC
Q 039432 241 KDKVVILLVSKPELLPLEKLFLLV---HQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQ 317 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~~~~~~~L---~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~ 317 (598)
+||.|+++|++.||++|..+...+ .++.+.+. +++.++.|-. ++++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-----~~~~~~~vd~-------~~~~------------------- 58 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALK-----KDVVLLRADW-------TKND------------------- 58 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh-----CCeEEEEEec-------CCCC-------------------
Confidence 589999999999985555443213 35555542 2455555543 1111
Q ss_pred cccHHHHHHHHHhhccCCccEEEEeCC-CCcee
Q 039432 318 LLNSAVVNLIKQEWNFKEEPIMVVLDS-QGMVT 349 (598)
Q Consensus 318 ~i~~~~~r~ike~~~~~~iP~LVvL~p-qGkv~ 349 (598)
.....+.+.|+++++|+++++++ +|+++
T Consensus 59 ----~~~~~~~~~~~i~~~Pti~~~~~~~g~~~ 87 (104)
T cd02953 59 ----PEITALLKRFGVFGPPTYLFYGPGGEPEP 87 (104)
T ss_pred ----HHHHHHHHHcCCCCCCEEEEECCCCCCCC
Confidence 11345667789999999999999 89876
No 53
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.06 E-value=0.0017 Score=64.11 Aligned_cols=102 Identities=17% Similarity=0.182 Sum_probs=70.8
Q ss_pred eeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEE------EEEEcCCCCCCChHh--HHHHHHh
Q 039432 234 QLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKI------VWVPISSSETWTDVE--ERNFELF 304 (598)
Q Consensus 234 kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEI------VwIpid~~~~W~D~d--e~~Fe~~ 304 (598)
.++.+.|+||.+++-|-|.|| +|+.+.|. |..+= ..+|.+ +=|..|. ..|.... ++..++.
T Consensus 51 ~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~-l~~l~--------~~~~~~~~y~~t~~IN~dd-~~~~~~~fVk~fie~~ 120 (184)
T TIGR01626 51 PWGSAELAGKVRVVHHIAGRTSAKEXNASL-IDAIK--------AAKFPPVKYQTTTIINADD-AIVGTGMFVKSSAKKG 120 (184)
T ss_pred eccHHHcCCCEEEEEEEecCCChhhccchH-HHHHH--------HcCCCcccccceEEEECcc-chhhHHHHHHHHHHHh
Confidence 688899999999999999998 77788888 88871 123666 7777621 1122111 1222445
Q ss_pred hcCCCeeeeecCCcccHHHHHHHHHhhccCCccEE-EEeCCCCceech
Q 039432 305 SCSLPWYSVRQPQLLNSAVVNLIKQEWNFKEEPIM-VVLDSQGMVTNS 351 (598)
Q Consensus 305 ~~~MPWyAVp~~~~i~~~~~r~ike~~~~~~iP~L-VvL~pqGkv~~~ 351 (598)
...-||-.+-. |..+ .+...|++.++|.- +|+|++|+++..
T Consensus 121 ~~~~P~~~vll----D~~g--~v~~~~gv~~~P~T~fVIDk~GkVv~~ 162 (184)
T TIGR01626 121 KKENPWSQVVL----DDKG--AVKNAWQLNSEDSAIIVLDKTGKVKFV 162 (184)
T ss_pred cccCCcceEEE----CCcc--hHHHhcCCCCCCceEEEECCCCcEEEE
Confidence 66789876655 3332 34568999999888 799999998853
No 54
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=97.00 E-value=0.0065 Score=59.74 Aligned_cols=124 Identities=10% Similarity=0.160 Sum_probs=80.5
Q ss_pred cCCceeecceecCcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCC---CCCChHhHHHHHH--h
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSS---ETWTDVEERNFEL--F 304 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~---~~W~D~de~~Fe~--~ 304 (598)
.+|..|++++++||.|++.|-|.||+|+.+++. |+++|++.. +..++|+-||.+.. ++=+.++-+.|-. +
T Consensus 13 ~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~q~~~-L~~L~~~y~----~~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~ 87 (183)
T PRK10606 13 IDGEVTTLEKYAGNVLLIVNVASKCGLTPQYEQ-LENIQKAWA----DQGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTW 87 (183)
T ss_pred CCCCEEeHHHhCCCEEEEEEEeCCCCCcHHHHH-HHHHHHHHh----hCCeEEEEeeccccccCCCCCHHHHHHHHHHcc
Confidence 466789999999999999999999877778888 999999973 34699999998210 1112333444532 2
Q ss_pred hcCCCeee---eecCCcccHHHHHHHHHhhccCCc----------------cE----------EEEeCCCCceechhHHH
Q 039432 305 SCSLPWYS---VRQPQLLNSAVVNLIKQEWNFKEE----------------PI----------MVVLDSQGMVTNSNALD 355 (598)
Q Consensus 305 ~~~MPWyA---Vp~~~~i~~~~~r~ike~~~~~~i----------------P~----------LVvL~pqGkv~~~nA~~ 355 (598)
--+.|=++ |.-+. ..++-+||++....... |. =-++|++|+|+..
T Consensus 88 g~~Fpv~~k~dvnG~~--~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r---- 161 (183)
T PRK10606 88 GVTFPMFSKIEVNGEG--RHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQR---- 161 (183)
T ss_pred CCCceeEEEEccCCCC--CCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEE----
Confidence 22233221 11111 23588999876543211 11 4678999999754
Q ss_pred HHHHhCcCccCCC
Q 039432 356 MVLIWGARGYPFS 368 (598)
Q Consensus 356 mI~~wG~~AfPFT 368 (598)
|+...-|-+
T Consensus 162 ----~~~~~~p~~ 170 (183)
T PRK10606 162 ----FSPDMTPED 170 (183)
T ss_pred ----ECCCCCCCH
Confidence 777777743
No 55
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.95 E-value=0.0028 Score=55.58 Aligned_cols=71 Identities=11% Similarity=0.125 Sum_probs=49.0
Q ss_pred ecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCc
Q 039432 240 LKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQL 318 (598)
Q Consensus 240 L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~ 318 (598)
-+||.|+|.|.+.|| +|....+. |.++.++. .+ ++|+-+|. |++.
T Consensus 13 ~~~k~vvv~F~a~wC~~C~~~~p~-l~~la~~~------~~--v~~~~vd~-----d~~~-------------------- 58 (103)
T cd02985 13 AKGRLVVLEFALKHSGPSVKIYPT-MVKLSRTC------ND--VVFLLVNG-----DEND-------------------- 58 (103)
T ss_pred cCCCEEEEEEECCCCHhHHHHhHH-HHHHHHHC------CC--CEEEEEEC-----CCCh--------------------
Confidence 358999999999998 55556666 78877764 12 45666621 2111
Q ss_pred ccHHHHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 319 LNSAVVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 319 i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
..+.+.+.|++++.|+++++ .+|+++
T Consensus 59 ----~~~~l~~~~~V~~~Pt~~~~-~~G~~v 84 (103)
T cd02985 59 ----STMELCRREKIIEVPHFLFY-KDGEKI 84 (103)
T ss_pred ----HHHHHHHHcCCCcCCEEEEE-eCCeEE
Confidence 12345677899999998777 789876
No 56
>PRK13599 putative peroxiredoxin; Provisional
Probab=96.92 E-value=0.0019 Score=64.81 Aligned_cols=109 Identities=5% Similarity=0.042 Sum_probs=71.1
Q ss_pred CCceeecceecCcEE-EEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCC
Q 039432 231 KSEQLGVSELKDKVV-ILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSL 308 (598)
Q Consensus 231 ~~~kV~Is~L~gK~V-lLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~M 308 (598)
.|..+..+.++||.| +++|=+.|| +|..++.. |.+.|++.+ +.+++||=||.|. ......|.+....+
T Consensus 17 ~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~-l~~~~~~f~----~~gv~vigIS~D~-----~~~~~~w~~~i~~~ 86 (215)
T PRK13599 17 QGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVE-FARKANDFK----ELNTELIGLSVDQ-----VFSHIKWVEWIKDN 86 (215)
T ss_pred CCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHH-HHHHHHHHH----HCCCEEEEEeCCC-----HHHHHHHHHhHHHh
Confidence 455566688999975 667788886 68899998 999999984 3458999999842 23345554432211
Q ss_pred CeeeeecCCcccHHHHHHHHHhhcc-------CCccEEEEeCCCCceech
Q 039432 309 PWYSVRQPQLLNSAVVNLIKQEWNF-------KEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 309 PWyAVp~~~~i~~~~~r~ike~~~~-------~~iP~LVvL~pqGkv~~~ 351 (598)
-=+.++||=..|.. +.+.+.|++ ...|...|+||+|++...
T Consensus 87 ~~~~i~fPil~D~~--~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~ 134 (215)
T PRK13599 87 TNIAIPFPVIADDL--GKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLI 134 (215)
T ss_pred cCCCCceeEEECCC--chHHHHcCCCccCCCCceeeEEEEECCCCEEEEE
Confidence 00124444322321 234555665 357999999999999765
No 57
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.88 E-value=0.0024 Score=63.95 Aligned_cols=102 Identities=9% Similarity=0.238 Sum_probs=67.9
Q ss_pred ceeec-ceecCcEEEE-EEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhh----
Q 039432 233 EQLGV-SELKDKVVIL-LVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFS---- 305 (598)
Q Consensus 233 ~kV~I-s~L~gK~VlL-yfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~---- 305 (598)
+++.. +.++||.|.| +|=+.|| +|..++.. |.+.|++++ +.+.+|+-||+|. ....+.|.+..
T Consensus 23 G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~-l~~~~~ef~----~~g~~VigvS~Ds-----~~~h~aw~~~~~~~~ 92 (215)
T PRK13191 23 GKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYS-FAKKYEEFK----KLNTELIGLSVDS-----NISHIEWVMWIEKNL 92 (215)
T ss_pred CCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHH-HHHHHHHHH----HCCCEEEEEECCC-----HHHHHHHHhhHHHhc
Confidence 35666 4489997666 6678885 78899999 999999984 3469999999842 22333443322
Q ss_pred -cCCCeeeeecCCcccHHHHHHHHHhhccC-------CccEEEEeCCCCceech
Q 039432 306 -CSLPWYSVRQPQLLNSAVVNLIKQEWNFK-------EEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 306 -~~MPWyAVp~~~~i~~~~~r~ike~~~~~-------~iP~LVvL~pqGkv~~~ 351 (598)
...|+..+--+ . +.+.+.|++- ..|...|+||+|++...
T Consensus 93 ~~~i~fPllsD~-----~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 139 (215)
T PRK13191 93 KVEVPFPIIADP-----M--GNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLI 139 (215)
T ss_pred CCCCceEEEECC-----c--hHHHHHcCCcccccCCceeEEEEEECCCCEEEEE
Confidence 13444433322 2 4455566652 37999999999998764
No 58
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=96.87 E-value=0.0012 Score=59.16 Aligned_cols=83 Identities=16% Similarity=0.221 Sum_probs=51.2
Q ss_pred cC-cEEEEEEecCCCCChhhh-hHHHH---HHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeec
Q 039432 241 KD-KVVILLVSKPELLPLEKL-FLLVH---QTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQ 315 (598)
Q Consensus 241 ~g-K~VlLyfSal~~~~~~~~-~~~L~---~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~ 315 (598)
+| |.|+++|++.||+.|..+ +. +. .+.+.+ +++|.++-|.+| .+....+ |
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~-~~~~~~~~~~~-----~~~~~~~~i~~d-------~~~~~~~------------~ 66 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRD-YLNDPAVQAYI-----RAHFVVVYINID-------GDKEVTD------------F 66 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHH-hcCcHHHHHHH-----HhheEEEEEEcc-------CCceeec------------c
Confidence 46 899999999998544433 33 32 333333 135777777762 1111110 1
Q ss_pred CCcccHHHHHHHHHhhccCCccEEEEeCCC-Cceec
Q 039432 316 PQLLNSAVVNLIKQEWNFKEEPIMVVLDSQ-GMVTN 350 (598)
Q Consensus 316 ~~~i~~~~~r~ike~~~~~~iP~LVvL~pq-Gkv~~ 350 (598)
.. .....+.+.+.|++++.|++++++++ |+++.
T Consensus 67 ~~--~~~~~~~l~~~~~v~~~Pt~~~~~~~gg~~~~ 100 (125)
T cd02951 67 DG--EALSEKELARKYRVRFTPTVIFLDPEGGKEIA 100 (125)
T ss_pred CC--CCccHHHHHHHcCCccccEEEEEcCCCCceeE
Confidence 11 01124567788899999999999999 88774
No 59
>PRK13189 peroxiredoxin; Provisional
Probab=96.80 E-value=0.0034 Score=63.14 Aligned_cols=101 Identities=10% Similarity=0.172 Sum_probs=65.0
Q ss_pred eeecce-ecCcEEEE-EEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHH-hhc---
Q 039432 234 QLGVSE-LKDKVVIL-LVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFEL-FSC--- 306 (598)
Q Consensus 234 kV~Is~-L~gK~VlL-yfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~-~~~--- 306 (598)
++.+++ ++||.|.| +|=+.|| .|..++.. |.+.|++.+ +.+.+|+-||.|. ......|-+ +..
T Consensus 26 ~~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~-l~~~~~ef~----~~~v~VigvS~D~-----~~~h~aw~~~~~~~~g 95 (222)
T PRK13189 26 PIKLPDDYKGKWFVLFSHPADFTPVCTTEFVA-FQKRYDEFR----ELNTELIGLSIDQ-----VFSHIKWVEWIKEKLG 95 (222)
T ss_pred CEeeHHHhCCCeEEEEEeCCCCCCCCHHHHHH-HHHHHHHHH----HcCCEEEEEECCC-----HHHHHHHHHhHHHhcC
Confidence 566665 69996655 6677786 67789999 999999983 3568999999842 222333332 111
Q ss_pred -CCCeeeeecCCcccHHHHHHHHHhhccC-------CccEEEEeCCCCceech
Q 039432 307 -SLPWYSVRQPQLLNSAVVNLIKQEWNFK-------EEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 307 -~MPWyAVp~~~~i~~~~~r~ike~~~~~-------~iP~LVvL~pqGkv~~~ 351 (598)
.+|+--+- |.. +.+.+.|++. ..|..+++||+|++...
T Consensus 96 ~~i~fPlls-----D~~--~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~ 141 (222)
T PRK13189 96 VEIEFPIIA-----DDR--GEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAI 141 (222)
T ss_pred cCcceeEEE-----cCc--cHHHHHhCCCccccCCCceeEEEEECCCCeEEEE
Confidence 23432222 222 3455566654 46999999999998543
No 60
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=96.56 E-value=0.0049 Score=52.33 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=48.4
Q ss_pred cCcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
+||.|+++|.+.||+ |....+. |.++++... +. +.++-+ |.++.
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~-~~~~~~~~~-----~~--~~~~~v-------d~~~~-------------------- 55 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPL-LERLAEEYQ-----GQ--FVLAKV-------NCDAQ-------------------- 55 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHH-HHHHHHHhC-----Cc--EEEEEE-------eccCC--------------------
Confidence 478999999999984 5555555 788887752 22 556666 22211
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
+.+.+.|++++.|++++++ +|+.+
T Consensus 56 -----~~l~~~~~i~~~Pt~~~~~-~g~~~ 79 (96)
T cd02956 56 -----PQIAQQFGVQALPTVYLFA-AGQPV 79 (96)
T ss_pred -----HHHHHHcCCCCCCEEEEEe-CCEEe
Confidence 2356778999999999997 89875
No 61
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=96.53 E-value=0.0032 Score=57.16 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=43.2
Q ss_pred ecCcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 240 LKDKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 240 L~gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
-+||.|+|.|++.||++|..+-..+.+..+.. .. +-.+|.|-+ |.+++..
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~---~~--~~~fv~v~v-------d~~~~~~------------------ 66 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEIS---EL--SHNFVMVNL-------EDDEEPK------------------ 66 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHH---hh--cCcEEEEEe-------cCCCCch------------------
Confidence 35899999999999855554433244432221 11 123455554 2111110
Q ss_pred cHHHHHHHHHhhccCC--ccEEEEeCCCCceech
Q 039432 320 NSAVVNLIKQEWNFKE--EPIMVVLDSQGMVTNS 351 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~--iP~LVvL~pqGkv~~~ 351 (598)
.+.|++.+ +|++++++|+|+++..
T Consensus 67 --------~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 67 --------DEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred --------hhhcccCCCccceEEEECCCCCCchh
Confidence 12345554 8999999999999753
No 62
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=96.51 E-value=0.003 Score=55.50 Aligned_cols=68 Identities=7% Similarity=0.003 Sum_probs=48.2
Q ss_pred ceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecC
Q 039432 238 SELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQP 316 (598)
Q Consensus 238 s~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~ 316 (598)
+.++||.|++.|.+.|| +|+...+. |.++.++.. + +.++-+| .+. .+
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~-l~~la~~~~------~--~~~~~vd-------~~~---------------~~- 61 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPH-FNALSSMFP------Q--IRHLAIE-------ESS---------------IK- 61 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHH-HHHHHHHhc------c--CceEEEE-------CCC---------------CC-
Confidence 35799999999999998 46666677 888887752 1 3455552 121 01
Q ss_pred CcccHHHHHHHHHhhccCCccEEEEeCCC
Q 039432 317 QLLNSAVVNLIKQEWNFKEEPIMVVLDSQ 345 (598)
Q Consensus 317 ~~i~~~~~r~ike~~~~~~iP~LVvL~pq 345 (598)
..+.+.|++++.|+++++++.
T Consensus 62 --------~~l~~~~~V~~~PT~~lf~~g 82 (100)
T cd02999 62 --------PSLLSRYGVVGFPTILLFNST 82 (100)
T ss_pred --------HHHHHhcCCeecCEEEEEcCC
Confidence 145678899999999999854
No 63
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=96.28 E-value=0.013 Score=54.17 Aligned_cols=81 Identities=10% Similarity=0.188 Sum_probs=54.6
Q ss_pred ecCcEEEEEEec-------CCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCee
Q 039432 240 LKDKVVILLVSK-------PELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWY 311 (598)
Q Consensus 240 L~gK~VlLyfSa-------l~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWy 311 (598)
-+||.|.++|+| .||+ |+..-+. |.++.++.. ++..++.|=+|....|.|..
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~-l~~l~~~~~-----~~v~fv~Vdvd~~~~w~d~~-------------- 78 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPV-VREALKAAP-----EDCVFIYCDVGDRPYWRDPN-------------- 78 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchh-HHHHHHHCC-----CCCEEEEEEcCCcccccCcc--------------
Confidence 368999999999 9985 4455566 888888752 23555555543222233211
Q ss_pred eeecCCcccHHHHHHHHHhhccC-CccEEEEeCCCCceechhH
Q 039432 312 SVRQPQLLNSAVVNLIKQEWNFK-EEPIMVVLDSQGMVTNSNA 353 (598)
Q Consensus 312 AVp~~~~i~~~~~r~ike~~~~~-~iP~LVvL~pqGkv~~~nA 353 (598)
..++..++++ ++|+++++...++++.++-
T Consensus 79 -------------~~~~~~~~I~~~iPT~~~~~~~~~l~~~~c 108 (119)
T cd02952 79 -------------NPFRTDPKLTTGVPTLLRWKTPQRLVEDEC 108 (119)
T ss_pred -------------hhhHhccCcccCCCEEEEEcCCceecchhh
Confidence 2344567888 9999999998888887663
No 64
>PTZ00051 thioredoxin; Provisional
Probab=96.21 E-value=0.009 Score=50.79 Aligned_cols=67 Identities=19% Similarity=0.224 Sum_probs=47.2
Q ss_pred cCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
.+|.|+|+|.+.|| +|+.+.+. |.++.++. -++.|+.+ |.++
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~-l~~l~~~~--------~~~~~~~v-------d~~~--------------------- 59 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPF-YEECSKEY--------TKMVFVKV-------DVDE--------------------- 59 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHH-HHHHHHHc--------CCcEEEEE-------ECcc---------------------
Confidence 36899999999997 45555555 77777653 13677887 2211
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
...+.+.|++++.|+++++ .+|+++
T Consensus 60 ----~~~~~~~~~v~~~Pt~~~~-~~g~~~ 84 (98)
T PTZ00051 60 ----LSEVAEKENITSMPTFKVF-KNGSVV 84 (98)
T ss_pred ----hHHHHHHCCCceeeEEEEE-eCCeEE
Confidence 1245677899999998877 688876
No 65
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.20 E-value=0.017 Score=49.77 Aligned_cols=68 Identities=15% Similarity=0.244 Sum_probs=46.7
Q ss_pred cCcEEEEEEecCCCCC-hhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPELLP-LEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~-~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
.+|.|+++|++.||+. ....+. |.++.+++. +++.++.|-+ |++.
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~-l~~l~~~~~-----~~v~~~~id~-------d~~~--------------------- 57 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPI-LNKVIDEFD-----GAVHFVEIDI-------DEDQ--------------------- 57 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHH-HHHHHHHhC-----CceEEEEEEC-------CCCH---------------------
Confidence 4689999999999854 455555 888887752 2344444443 2111
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
-+.+.+++.+.|+++++. +|+++
T Consensus 58 ------~l~~~~~v~~vPt~~i~~-~g~~v 80 (97)
T cd02949 58 ------EIAEAAGIMGTPTVQFFK-DKELV 80 (97)
T ss_pred ------HHHHHCCCeeccEEEEEE-CCeEE
Confidence 144577899999999995 78887
No 66
>PRK10996 thioredoxin 2; Provisional
Probab=96.08 E-value=0.015 Score=54.08 Aligned_cols=70 Identities=11% Similarity=0.194 Sum_probs=49.0
Q ss_pred cCcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
++|.|+|+|.+.||+ |....+. |.+++++.. ++ +.|+-+|. |+.
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~-l~~l~~~~~-----~~--v~~~~vd~-----~~~---------------------- 95 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPI-FEDVAAERS-----GK--VRFVKVNT-----EAE---------------------- 95 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHH-HHHHHHHhC-----CC--eEEEEEeC-----CCC----------------------
Confidence 489999999999974 4455565 888887752 22 56666621 110
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCceech
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 351 (598)
..+.+.|++++.|++++++ +|+++..
T Consensus 96 -----~~l~~~~~V~~~Ptlii~~-~G~~v~~ 121 (139)
T PRK10996 96 -----RELSARFRIRSIPTIMIFK-NGQVVDM 121 (139)
T ss_pred -----HHHHHhcCCCccCEEEEEE-CCEEEEE
Confidence 1356788999999999885 8987743
No 67
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=95.86 E-value=0.029 Score=48.99 Aligned_cols=68 Identities=12% Similarity=0.156 Sum_probs=45.8
Q ss_pred cCcEEEEEEecCCCCCh-hhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPELLPL-EKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~-~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
.||.|.|+|.+.||++| ...+. |.+++++.. +.. +.|+-+|. | . +
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~-l~~~~~~~~----~~~--~~~~~vd~-----d--~-----------------~--- 61 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSL-FKKIKNELG----DDL--LHFATAEA-----D--T-----------------I--- 61 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHH-HHHHHHHcC----CCc--EEEEEEeC-----C--C-----------------H---
Confidence 58999999999998544 55566 888888762 122 44555411 2 1 0
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
+ +.+.|++++.|+++++. +|+.+
T Consensus 62 --~----~~~~~~v~~~Pt~~~~~-~g~~~ 84 (102)
T cd02948 62 --D----TLKRYRGKCEPTFLFYK-NGELV 84 (102)
T ss_pred --H----HHHHcCCCcCcEEEEEE-CCEEE
Confidence 1 23778999999999885 77655
No 68
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=95.77 E-value=0.033 Score=47.01 Aligned_cols=70 Identities=9% Similarity=-0.035 Sum_probs=48.6
Q ss_pred cCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
++|.+.++|.+.|| .|+.+.+. +.++.+..+ .+.++.+..+.. |+.
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~-~~~~~~~~~---~~~~~~~~~~d~-------~~~---------------------- 58 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPE-YEKLAKELK---GDPDIVLAKVDA-------TAE---------------------- 58 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChH-HHHHHHHhc---cCCceEEEEEEc-------cch----------------------
Confidence 78999999999997 45555566 778777763 122444444443 211
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCce
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGMV 348 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv 348 (598)
..+.+.+++++.|++++++++|++
T Consensus 59 -----~~~~~~~~i~~~P~~~~~~~~~~~ 82 (102)
T TIGR01126 59 -----KDLASRFGVSGFPTIKFFPKGKKP 82 (102)
T ss_pred -----HHHHHhCCCCcCCEEEEecCCCcc
Confidence 235577899999999999988864
No 69
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=95.66 E-value=0.027 Score=50.14 Aligned_cols=73 Identities=8% Similarity=0.023 Sum_probs=50.0
Q ss_pred eecCcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCC
Q 039432 239 ELKDKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQ 317 (598)
Q Consensus 239 ~L~gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~ 317 (598)
...||.|+++|.+.||+ |....+. +.++.+++. +. ++.+.-+| .++
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~-~~~l~~~~~----~~--~v~~~~vd-------~d~------------------- 67 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPV-WKEVIQELE----PL--GVGIATVN-------AGH------------------- 67 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHH-HHHHHHHHH----hc--CceEEEEe-------ccc-------------------
Confidence 34789999999999984 4455566 788888763 11 34455552 111
Q ss_pred cccHHHHHHHHHhhccCCccEEEEeCCCCceech
Q 039432 318 LLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 318 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 351 (598)
-+.+.+.|++++.|+++++ ++|+.+..
T Consensus 68 ------~~~l~~~~~V~~~Pt~~i~-~~g~~~~~ 94 (111)
T cd02963 68 ------ERRLARKLGAHSVPAIVGI-INGQVTFY 94 (111)
T ss_pred ------cHHHHHHcCCccCCEEEEE-ECCEEEEE
Confidence 0235677899999999999 48887643
No 70
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=95.59 E-value=0.016 Score=49.27 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=45.3
Q ss_pred EEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcccHH
Q 039432 244 VVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNSA 322 (598)
Q Consensus 244 ~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~~~ 322 (598)
.|+|+|.+.|| +|+.+.+. +.+++++... ...+ +.++-+ |.+. .
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~-~~~~~~~~~~--~~~~--~~~~~v-------d~~~----------------~------- 62 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPT-WEQLAKKFNN--ENPS--VKIAKV-------DCTQ----------------H------- 62 (102)
T ss_pred CEEEEEECCCCHHHHHhCHH-HHHHHHHHhc--cCCc--EEEEEE-------ECCC----------------C-------
Confidence 49999999998 46666677 8899888731 1223 444555 2111 0
Q ss_pred HHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 323 VVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 323 ~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
..+.+.|++++.|+++++ ++|+.+
T Consensus 63 --~~~~~~~~v~~~Pt~~~~-~~g~~~ 86 (102)
T cd03005 63 --RELCSEFQVRGYPTLLLF-KDGEKV 86 (102)
T ss_pred --hhhHhhcCCCcCCEEEEE-eCCCee
Confidence 134566899999999999 677754
No 71
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=95.58 E-value=0.021 Score=48.34 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=39.6
Q ss_pred CcEEEEEcCCC-hhHHHHHHHHHHHH-Hhc--CceeeEEEeccCCchhhHHHHhhhh
Q 039432 401 GRNICLYGSEN-KDWIIEFNAKMMEI-RRL--GLQVDMVFVGVKNPSEQVRNVLATI 453 (598)
Q Consensus 401 gK~I~LYgg~d-~~Wir~FT~~l~~i-~~~--~~~~E~v~Vgkd~~~e~v~~~~~~i 453 (598)
||+++|||.+. ...|+++.+.+.++ +.- +..+++|+|+.|...+..++.++..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~ 57 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKN 57 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTC
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhc
Confidence 89999999884 24469999999999 543 5999999999997667665555443
No 72
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.49 E-value=0.06 Score=52.23 Aligned_cols=103 Identities=14% Similarity=0.142 Sum_probs=71.1
Q ss_pred cCCceeecceecCcEEEEEEecCC--CCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcC
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPE--LLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCS 307 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~--~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~ 307 (598)
.+|+.|.++.++||.|.|||=--+ +.|..|.-- +..-|.+++ +-+.+|+=||.|. -...++|-+-++
T Consensus 18 ~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~-Frd~~~ef~----~~~a~V~GIS~Ds-----~~~~~~F~~k~~- 86 (157)
T COG1225 18 QDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACD-FRDLLEEFE----KLGAVVLGISPDS-----PKSHKKFAEKHG- 86 (157)
T ss_pred CCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHH-HHHHHHHHH----hCCCEEEEEeCCC-----HHHHHHHHHHhC-
Confidence 456689999999999999997776 356677766 778888873 3479999999854 556788876432
Q ss_pred CCeeeeecCCcccHHHHHHHHHhhccC------------CccEEEEeCCCCceec
Q 039432 308 LPWYSVRQPQLLNSAVVNLIKQEWNFK------------EEPIMVVLDSQGMVTN 350 (598)
Q Consensus 308 MPWyAVp~~~~i~~~~~r~ike~~~~~------------~iP~LVvL~pqGkv~~ 350 (598)
++|+=+-|.. +.+.+.|++- -+++-.|||++|++..
T Consensus 87 -----L~f~LLSD~~--~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~ 134 (157)
T COG1225 87 -----LTFPLLSDED--GEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRY 134 (157)
T ss_pred -----CCceeeECCc--HHHHHHhCcccccccCccccccccceEEEECCCCeEEE
Confidence 2332111222 1255555652 3578899999999875
No 73
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=95.43 E-value=0.054 Score=54.18 Aligned_cols=113 Identities=8% Similarity=0.179 Sum_probs=75.7
Q ss_pred cccCCceeecceecCcEEEEEEecCCC--CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhh
Q 039432 228 IAMKSEQLGVSELKDKVVILLVSKPEL--LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFS 305 (598)
Q Consensus 228 ~~~~~~kV~Is~L~gK~VlLyfSal~~--~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~ 305 (598)
+-.+|.++....|+||.+++||.=--| .|+-.+.. |.++.++|.. ..+.++.+|+|++| ++.|. .+.-++|-
T Consensus 53 ~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~-l~~~~~~l~~-~~~~~v~vv~itvD---PerDt-p~~lk~Y~ 126 (207)
T COG1999 53 TDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAE-LKALLKKLGE-GEGDDVQVVFITVD---PERDT-PEVLKKYA 126 (207)
T ss_pred ecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHH-HHHHHHHhcc-ccCCCEEEEEEEEC---CCCCC-HHHHHHHh
Confidence 356777899999999999999996665 57788887 8999999953 56889999999984 44443 33444444
Q ss_pred c--CC-CeeeeecCCcccHHHHHHHHHhhcc---------------CCccEEEEeCCCCceec
Q 039432 306 C--SL-PWYSVRQPQLLNSAVVNLIKQEWNF---------------KEEPIMVVLDSQGMVTN 350 (598)
Q Consensus 306 ~--~M-PWyAVp~~~~i~~~~~r~ike~~~~---------------~~iP~LVvL~pqGkv~~ 350 (598)
. -= +|--+--+ .+.++.+...|++ .+-..+.++||+|++..
T Consensus 127 ~~~~~~~~~~ltg~----~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~ 185 (207)
T COG1999 127 ELNFDPRWIGLTGT----PEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLG 185 (207)
T ss_pred cccCCCCeeeeeCC----HHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEE
Confidence 4 11 25444442 2333434333333 33456788899998864
No 74
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=95.32 E-value=0.037 Score=46.79 Aligned_cols=68 Identities=15% Similarity=0.261 Sum_probs=47.2
Q ss_pred CcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCccc
Q 039432 242 DKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLN 320 (598)
Q Consensus 242 gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~ 320 (598)
+|.|+++|.+.||. |+...+. |.++.+++ .-.+.|+-+ |.++
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~-l~~l~~~~-------~~~i~~~~v-------d~~~---------------------- 56 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQV-FEELAKEA-------FPSVLFLSI-------EAEE---------------------- 56 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHH-HHHHHHHh-------CCceEEEEE-------cccc----------------------
Confidence 69999999999974 4444455 66666664 135777777 3211
Q ss_pred HHHHHHHHHhhccCCccEEEEeCCCCceec
Q 039432 321 SAVVNLIKQEWNFKEEPIMVVLDSQGMVTN 350 (598)
Q Consensus 321 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 350 (598)
...+.+.|++++.|+++++. +|+.+.
T Consensus 57 ---~~~~~~~~~i~~~Pt~~~~~-~g~~~~ 82 (97)
T cd02984 57 ---LPEISEKFEITAVPTFVFFR-NGTIVD 82 (97)
T ss_pred ---CHHHHHhcCCccccEEEEEE-CCEEEE
Confidence 12355778999999999995 888763
No 75
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=95.31 E-value=0.045 Score=47.26 Aligned_cols=69 Identities=7% Similarity=-0.030 Sum_probs=48.1
Q ss_pred cCcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
.||.|+|+|.+.||+ |....+. +.++.+++. +.+.++.|-. |.++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~-~~~~a~~~~-----~~~~~~~v~~-------~~~~--------------------- 62 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPE-YAKAAKELD-----GLVQVAAVDC-------DEDK--------------------- 62 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChH-HHHHHHHhc-----CCceEEEEec-------Cccc---------------------
Confidence 378899999999984 5555555 778777652 3466666665 2111
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCc
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGM 347 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGk 347 (598)
.+.+.+.|++++.|+++++++.|+
T Consensus 63 ----~~~~~~~~~i~~~Pt~~~~~~~~~ 86 (109)
T cd03002 63 ----NKPLCGKYGVQGFPTLKVFRPPKK 86 (109)
T ss_pred ----cHHHHHHcCCCcCCEEEEEeCCCc
Confidence 123556789999999999998874
No 76
>PRK09381 trxA thioredoxin; Provisional
Probab=95.18 E-value=0.06 Score=46.94 Aligned_cols=68 Identities=10% Similarity=0.092 Sum_probs=47.2
Q ss_pred CcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCccc
Q 039432 242 DKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLN 320 (598)
Q Consensus 242 gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~ 320 (598)
+|.|+++|.+.||+ |....+. |.++.++.. +++.+.-|-. |...
T Consensus 21 ~~~vvv~f~~~~C~~C~~~~p~-~~~l~~~~~-----~~~~~~~vd~-------~~~~---------------------- 65 (109)
T PRK09381 21 DGAILVDFWAEWCGPCKMIAPI-LDEIADEYQ-----GKLTVAKLNI-------DQNP---------------------- 65 (109)
T ss_pred CCeEEEEEECCCCHHHHHHhHH-HHHHHHHhC-----CCcEEEEEEC-------CCCh----------------------
Confidence 78999999999985 5555666 888888762 2344444433 2111
Q ss_pred HHHHHHHHHhhccCCccEEEEeCCCCceec
Q 039432 321 SAVVNLIKQEWNFKEEPIMVVLDSQGMVTN 350 (598)
Q Consensus 321 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 350 (598)
.+.+.|++++.|+++++ ++|+++.
T Consensus 66 -----~~~~~~~v~~~Pt~~~~-~~G~~~~ 89 (109)
T PRK09381 66 -----GTAPKYGIRGIPTLLLF-KNGEVAA 89 (109)
T ss_pred -----hHHHhCCCCcCCEEEEE-eCCeEEE
Confidence 13467899999999999 6898763
No 77
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=95.02 E-value=0.033 Score=48.46 Aligned_cols=67 Identities=10% Similarity=0.039 Sum_probs=45.6
Q ss_pred ecCcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCc
Q 039432 240 LKDKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQL 318 (598)
Q Consensus 240 L~gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~ 318 (598)
.+++.|+++|.+.||+ |+...+. |.+++++.+. ....+.+..+ |.+. +
T Consensus 13 ~~~~~vlv~f~a~wC~~C~~~~p~-l~~l~~~~~~----~~~~~~~~~v-------d~~~----------------~--- 61 (104)
T cd03000 13 RKEDIWLVDFYAPWCGHCKKLEPV-WNEVGAELKS----SGSPVRVGKL-------DATA----------------Y--- 61 (104)
T ss_pred ccCCeEEEEEECCCCHHHHhhChH-HHHHHHHHHh----cCCcEEEEEE-------ECcc----------------C---
Confidence 4568999999999984 5555566 8888887631 1234666665 2111 1
Q ss_pred ccHHHHHHHHHhhccCCccEEEEeC
Q 039432 319 LNSAVVNLIKQEWNFKEEPIMVVLD 343 (598)
Q Consensus 319 i~~~~~r~ike~~~~~~iP~LVvL~ 343 (598)
..+.+.|++++.|+++++.
T Consensus 62 ------~~~~~~~~I~~~Pt~~l~~ 80 (104)
T cd03000 62 ------SSIASEFGVRGYPTIKLLK 80 (104)
T ss_pred ------HhHHhhcCCccccEEEEEc
Confidence 1346678999999999994
No 78
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=94.83 E-value=0.022 Score=53.47 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=59.1
Q ss_pred cCcEEEEEEecCCCCChhhhhHHHHHHhcCcCC-CCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPELLPLEKLFLLVHQTYDHPHN-KNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~-~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
+||.|+|+|.+.||+.|..+-. .++...+- +...++| |.|.++. +++|.... ++
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k---~~f~~~eV~~~l~~~F--v~V~l~~--d~td~~~~----------------~~-- 76 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKK---AFAEHKEIQKLAQEDF--IMLNLVH--ETTDKNLS----------------PD-- 76 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHH---HhhCCHHHHHHHHhCe--EEEEEEe--ccCCCCcC----------------cc--
Confidence 5899999999999866654433 33333200 0112355 6666621 12221000 01
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCceechhHHHHHHHhCcCccCCCchhHHhhhc
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNSNALDMVLIWGARGYPFSVTREIELWQ 377 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AfPFT~~r~e~L~~ 377 (598)
+ .+.|+++++||+|+++.+ +.--++...|-+.+++++.|.+
T Consensus 77 ------------g-~~vPtivFld~~g~vi~~----i~Gy~~~~~~~y~~~~~~~~~~ 117 (130)
T cd02960 77 ------------G-QYVPRIMFVDPSLTVRAD----ITGRYSNRLYTYEPADIPLLIE 117 (130)
T ss_pred ------------C-cccCeEEEECCCCCCccc----ccccccCccceeCcCcHHHHHH
Confidence 1 368999999999999854 3567788889888998887754
No 79
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=94.80 E-value=0.089 Score=46.42 Aligned_cols=70 Identities=11% Similarity=0.117 Sum_probs=45.9
Q ss_pred cCcEEEEEEecCCCCCh-hhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPELLPL-EKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~-~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
+||.|++.|.+.||++| ...+. +.++.+++. +.++.+.-|-+ |.+.
T Consensus 20 ~~k~vlv~f~a~wC~~C~~~~~~-~~~la~~~~----~~~~~~~~vd~-------d~~~--------------------- 66 (109)
T cd02993 20 RNQSTLVVLYAPWCPFCQAMEAS-YEELAEKLA----GSNVKVAKFNA-------DGEQ--------------------- 66 (109)
T ss_pred cCCCEEEEEECCCCHHHHHHhHH-HHHHHHHhc----cCCeEEEEEEC-------Cccc---------------------
Confidence 57999999999998544 44455 777777652 23455555444 2110
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCc
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGM 347 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGk 347 (598)
....++.+++++.|+++++++.|+
T Consensus 67 ----~~~~~~~~~v~~~Pti~~f~~~~~ 90 (109)
T cd02993 67 ----REFAKEELQLKSFPTILFFPKNSR 90 (109)
T ss_pred ----hhhHHhhcCCCcCCEEEEEcCCCC
Confidence 112244579999999999988764
No 80
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=94.70 E-value=0.094 Score=44.98 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=43.8
Q ss_pred ecCcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCc
Q 039432 240 LKDKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQL 318 (598)
Q Consensus 240 L~gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~ 318 (598)
++|+ ++|+|.+.||+ |....+. +.++.+... + ..|.+..+|. |++.
T Consensus 15 ~~~~-~lv~f~a~wC~~C~~~~p~-~~~l~~~~~----~--~~v~~~~vd~-----~~~~-------------------- 61 (101)
T cd02994 15 LEGE-WMIEFYAPWCPACQQLQPE-WEEFADWSD----D--LGINVAKVDV-----TQEP-------------------- 61 (101)
T ss_pred hCCC-EEEEEECCCCHHHHHHhHH-HHHHHHhhc----c--CCeEEEEEEc-----cCCH--------------------
Confidence 5676 67999999984 5555566 777776542 2 2345555511 1111
Q ss_pred ccHHHHHHHHHhhccCCccEEEEeCCCCce
Q 039432 319 LNSAVVNLIKQEWNFKEEPIMVVLDSQGMV 348 (598)
Q Consensus 319 i~~~~~r~ike~~~~~~iP~LVvL~pqGkv 348 (598)
.+.+.|++++.|+++++ ++|++
T Consensus 62 -------~~~~~~~i~~~Pt~~~~-~~g~~ 83 (101)
T cd02994 62 -------GLSGRFFVTALPTIYHA-KDGVF 83 (101)
T ss_pred -------hHHHHcCCcccCEEEEe-CCCCE
Confidence 14567899999999886 88875
No 81
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=94.69 E-value=0.1 Score=43.63 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=45.0
Q ss_pred CcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCccc
Q 039432 242 DKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLN 320 (598)
Q Consensus 242 gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~ 320 (598)
+|.|.|+|.+.||+ |....+. |.++.++.. ++..++.|-. |.+
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~-l~~~~~~~~-----~~~~~~~vd~-------~~~----------------------- 57 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPI-LEELAKEYE-----GKVKFVKLNV-------DEN----------------------- 57 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHH-HHHHHHHhc-----CCeEEEEEEC-------CCC-----------------------
Confidence 57999999999974 4555555 777766642 2355555443 211
Q ss_pred HHHHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 321 SAVVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 321 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
+.+.+.|++++.|+++++ ++|+++
T Consensus 58 ----~~~~~~~~v~~~P~~~~~-~~g~~~ 81 (101)
T TIGR01068 58 ----PDIAAKYGIRSIPTLLLF-KNGKEV 81 (101)
T ss_pred ----HHHHHHcCCCcCCEEEEE-eCCcEe
Confidence 124466799999999999 678754
No 82
>PHA02278 thioredoxin-like protein
Probab=94.55 E-value=0.12 Score=46.24 Aligned_cols=73 Identities=14% Similarity=0.227 Sum_probs=45.6
Q ss_pred cCcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCccc
Q 039432 241 KDKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLN 320 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~ 320 (598)
+++.|+++|.|.||.||+.+.+.+.++-++. ..+.+++.|=+ |.+ .+ +
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~-----~~~~~~~~vdv-------d~~--~~------------------d 60 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESG-----DIKKPILTLNL-------DAE--DV------------------D 60 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhh-----cCCceEEEEEC-------Ccc--cc------------------c
Confidence 6899999999999855554433266654432 12244555555 211 10 0
Q ss_pred HHHHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 321 SAVVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 321 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
...+.+.|+++++|+++++. +|+.+
T Consensus 61 ---~~~l~~~~~I~~iPT~i~fk-~G~~v 85 (103)
T PHA02278 61 ---REKAVKLFDIMSTPVLIGYK-DGQLV 85 (103)
T ss_pred ---cHHHHHHCCCccccEEEEEE-CCEEE
Confidence 12266788999999999996 46655
No 83
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=94.27 E-value=0.078 Score=44.92 Aligned_cols=69 Identities=10% Similarity=0.030 Sum_probs=46.8
Q ss_pred CcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCccc
Q 039432 242 DKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLN 320 (598)
Q Consensus 242 gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~ 320 (598)
+|.|+++|.+.||+ |+++.+. +.++.+++. ... .++++.+| .+++ +
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~-~~~~~~~~~---~~~--~~~~~~id-------~~~~---------------~----- 64 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPE-YEKLAAVFA---NED--DVVIAKVD-------ADEA---------------N----- 64 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChH-HHHHHHHhC---CCC--CEEEEEEE-------CCCc---------------c-----
Confidence 57899999999974 5555566 788887763 112 35666662 1221 1
Q ss_pred HHHHHHHHHhhccCCccEEEEeCCCCc
Q 039432 321 SAVVNLIKQEWNFKEEPIMVVLDSQGM 347 (598)
Q Consensus 321 ~~~~r~ike~~~~~~iP~LVvL~pqGk 347 (598)
..+.+.|++++.|+++++++.|+
T Consensus 65 ----~~~~~~~~i~~~P~~~~~~~~~~ 87 (105)
T cd02998 65 ----KDLAKKYGVSGFPTLKFFPKGST 87 (105)
T ss_pred ----hhhHHhCCCCCcCEEEEEeCCCC
Confidence 23456679999999999998764
No 84
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=94.11 E-value=0.084 Score=46.13 Aligned_cols=72 Identities=13% Similarity=0.243 Sum_probs=47.8
Q ss_pred CcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCccc
Q 039432 242 DKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLN 320 (598)
Q Consensus 242 gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~ 320 (598)
++.|+++|.+.||+ |....+. +.++++++++. ..+.-.++|..+ |.++
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~-~~~~a~~~~~~-~~~~~~~~~~~v-------d~d~---------------------- 66 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPI-FEEAAAKIKEE-FPDAGKVVWGKV-------DCDK---------------------- 66 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHH-HHHHHHHHhhc-cCCCCcEEEEEE-------ECCC----------------------
Confidence 57899999999984 5555566 77777766311 111123677776 2211
Q ss_pred HHHHHHHHHhhccCCccEEEEeCCCCce
Q 039432 321 SAVVNLIKQEWNFKEEPIMVVLDSQGMV 348 (598)
Q Consensus 321 ~~~~r~ike~~~~~~iP~LVvL~pqGkv 348 (598)
-+.+.+.+++++.|+++++ ++|+.
T Consensus 67 ---~~~l~~~~~v~~~Ptl~~~-~~g~~ 90 (108)
T cd02996 67 ---ESDIADRYRINKYPTLKLF-RNGMM 90 (108)
T ss_pred ---CHHHHHhCCCCcCCEEEEE-eCCcC
Confidence 0235677899999999999 67874
No 85
>PTZ00062 glutaredoxin; Provisional
Probab=94.03 E-value=0.33 Score=48.86 Aligned_cols=126 Identities=11% Similarity=0.196 Sum_probs=73.2
Q ss_pred cEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcccHH
Q 039432 243 KVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNSA 322 (598)
Q Consensus 243 K~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~~~ 322 (598)
+.+.|||.+.||++|+.+.. +.++|.. +--+|.|+.+ |++
T Consensus 18 g~~vl~f~a~w~~~C~~m~~----vl~~l~~----~~~~~~F~~V-------~~d------------------------- 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMD----VCNALVE----DFPSLEFYVV-------NLA------------------------- 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHH----HHHHHHH----HCCCcEEEEE-------ccc-------------------------
Confidence 56799999999877765444 3444420 1124788888 322
Q ss_pred HHHHHHHhhccCCccEEEEeCCCCcee----chhHHHHH---HHhCcCccCCCchhHHhhhcccccccccccccCCcccc
Q 039432 323 VVNLIKQEWNFKEEPIMVVLDSQGMVT----NSNALDMV---LIWGARGYPFSVTREIELWQEEDWTLPLMIDEIHPLLN 395 (598)
Q Consensus 323 ~~r~ike~~~~~~iP~LVvL~pqGkv~----~~nA~~mI---~~wG~~AfPFT~~r~e~L~~~e~w~lelLvd~id~~I~ 395 (598)
|++.++|++|++. +|+.+ ..|+..+. ..|-.. .. .+ .+...+.
T Consensus 58 --------~~V~~vPtfv~~~-~g~~i~r~~G~~~~~~~~~~~~~~~~-----~~-~~---------------~~~~~v~ 107 (204)
T PTZ00062 58 --------DANNEYGVFEFYQ-NSQLINSLEGCNTSTLVSFIRGWAQK-----GS-SE---------------DTVEKIE 107 (204)
T ss_pred --------cCcccceEEEEEE-CCEEEeeeeCCCHHHHHHHHHHHcCC-----CC-HH---------------HHHHHHH
Confidence 6899999999995 55554 44554432 222110 00 00 0111222
Q ss_pred cccccCcEEEEE--cCCChhHHHHHHHHHHHH-HhcCceeeEEEeccC
Q 039432 396 KWVQEGRNICLY--GSENKDWIIEFNAKMMEI-RRLGLQVDMVFVGVK 440 (598)
Q Consensus 396 ~~i~egK~I~LY--gg~d~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd 440 (598)
+.|+. +-|.|| |.....|| .|..++..+ ++.+++++.+-|.+|
T Consensus 108 ~li~~-~~Vvvf~Kg~~~~p~C-~~C~~~k~~L~~~~i~y~~~DI~~d 153 (204)
T PTZ00062 108 RLIRN-HKILLFMKGSKTFPFC-RFSNAVVNMLNSSGVKYETYNIFED 153 (204)
T ss_pred HHHhc-CCEEEEEccCCCCCCC-hhHHHHHHHHHHcCCCEEEEEcCCC
Confidence 23333 334444 43444567 566778888 888999999888865
No 86
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=94.00 E-value=0.2 Score=43.19 Aligned_cols=68 Identities=9% Similarity=0.053 Sum_probs=44.8
Q ss_pred ecCcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCc
Q 039432 240 LKDKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQL 318 (598)
Q Consensus 240 L~gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~ 318 (598)
-++|.|+++|.+.||+ |....+. +.++-+++. +. +.+.-+ |.++.
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~-~~~~a~~~~-----~~--~~~~~v-------d~~~~------------------- 61 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPT-WREFAKEMD-----GV--IRIGAV-------NCGDD------------------- 61 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHH-HHHHHHHhc-----Cc--eEEEEE-------eCCcc-------------------
Confidence 3568999999999974 4444455 666666652 23 455555 21110
Q ss_pred ccHHHHHHHHHhhccCCccEEEEeCCCCce
Q 039432 319 LNSAVVNLIKQEWNFKEEPIMVVLDSQGMV 348 (598)
Q Consensus 319 i~~~~~r~ike~~~~~~iP~LVvL~pqGkv 348 (598)
+.+.+.+++++.|+++++ ++|+.
T Consensus 62 ------~~~~~~~~v~~~Pt~~~~-~~g~~ 84 (101)
T cd03003 62 ------RMLCRSQGVNSYPSLYVF-PSGMN 84 (101)
T ss_pred ------HHHHHHcCCCccCEEEEE-cCCCC
Confidence 124567799999999999 77874
No 87
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=93.95 E-value=0.19 Score=46.11 Aligned_cols=78 Identities=8% Similarity=0.139 Sum_probs=47.9
Q ss_pred CcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcccH
Q 039432 242 DKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNS 321 (598)
Q Consensus 242 gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~~ 321 (598)
|+++.+||.+.|||+|+.+.+.|.++=++ .+.+|.+|-+ |.+.. .+..+.
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-------~~~~~y~vdv-------d~~~~----------------~~~~~~ 72 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQ-------TKAPIYYIDS-------ENNGS----------------FEMSSL 72 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHh-------cCCcEEEEEC-------CCccC----------------cCcccH
Confidence 78899999999986666655547766444 3366888887 32211 011112
Q ss_pred HHHHHHHHhh----ccCCccEEEEeCCCCceec
Q 039432 322 AVVNLIKQEW----NFKEEPIMVVLDSQGMVTN 350 (598)
Q Consensus 322 ~~~r~ike~~----~~~~iP~LVvL~pqGkv~~ 350 (598)
+-.+.+.+.| ++.++|++|++. +||.+.
T Consensus 73 ~~~~~~~~~~~i~~~i~~~PT~v~~k-~Gk~v~ 104 (122)
T TIGR01295 73 NDLTAFRSRFGIPTSFMGTPTFVHIT-DGKQVS 104 (122)
T ss_pred HHHHHHHHHcCCcccCCCCCEEEEEe-CCeEEE
Confidence 2233344444 466799999775 677664
No 88
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=93.93 E-value=0.083 Score=50.40 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=39.2
Q ss_pred cCcEEEEEcCCCh-hHHHHHHHHHHHH-Hh--------cCceeeEEEeccCCchhhHHHHh
Q 039432 400 EGRNICLYGSENK-DWIIEFNAKMMEI-RR--------LGLQVDMVFVGVKNPSEQVRNVL 450 (598)
Q Consensus 400 egK~I~LYgg~d~-~Wir~FT~~l~~i-~~--------~~~~~E~v~Vgkd~~~e~v~~~~ 450 (598)
.||.++|||.+.+ .-|++|++.|.++ ++ .+..||+++|+.|...+.+++.+
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~ 84 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFL 84 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHH
Confidence 7999999999942 3359999999987 42 23469999999987666665554
No 89
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=93.92 E-value=0.25 Score=40.72 Aligned_cols=68 Identities=12% Similarity=0.043 Sum_probs=45.2
Q ss_pred cCcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
+++.++++|.+.||+ |....+. +.++.+.++ .+++ +.++.+ |.++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~-~~~~~~~~~---~~~~--~~~~~v-------~~~~--------------------- 59 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPE-YEKLAKELK---GDGK--VVVAKV-------DCTA--------------------- 59 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHH-HHHHHHHhc---cCCc--eEEEEe-------eccc---------------------
Confidence 456899999999974 4455555 778777763 1233 445554 1111
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCC
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQG 346 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqG 346 (598)
...+.+.+++++.|++++++++|
T Consensus 60 ----~~~~~~~~~i~~~Pt~~~~~~~~ 82 (101)
T cd02961 60 ----NNDLCSEYGVRGYPTIKLFPNGS 82 (101)
T ss_pred ----hHHHHHhCCCCCCCEEEEEcCCC
Confidence 12445677999999999999886
No 90
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=93.48 E-value=0.19 Score=57.35 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=47.9
Q ss_pred cCcEEEEEEecCCCCChhhhhHHH---HHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCC
Q 039432 241 KDKVVILLVSKPELLPLEKLFLLV---HQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQ 317 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~~~~~~~L---~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~ 317 (598)
+||.|++.|.+.||++|+..-... .++.++++ + ++++-+| |++.++
T Consensus 473 ~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~------~--~~~v~vD----vt~~~~------------------- 521 (571)
T PRK00293 473 KGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA------D--TVLLQAD----VTANNA------------------- 521 (571)
T ss_pred cCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc------C--CEEEEEE----CCCCCh-------------------
Confidence 489999999999986555442201 34444431 2 3566663 222111
Q ss_pred cccHHHHHHHHHhhccCCccEEEEeCCCCceec
Q 039432 318 LLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTN 350 (598)
Q Consensus 318 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 350 (598)
..+.+.++|++.+.|+++++|++|+.++
T Consensus 522 -----~~~~l~~~~~v~g~Pt~~~~~~~G~~i~ 549 (571)
T PRK00293 522 -----EDVALLKHYNVLGLPTILFFDAQGQEIP 549 (571)
T ss_pred -----hhHHHHHHcCCCCCCEEEEECCCCCCcc
Confidence 1234667789999999999999999853
No 91
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=93.42 E-value=0.37 Score=42.84 Aligned_cols=25 Identities=20% Similarity=0.403 Sum_probs=20.8
Q ss_pred HHHHhhccCCccEEEEeCC-CCceec
Q 039432 326 LIKQEWNFKEEPIMVVLDS-QGMVTN 350 (598)
Q Consensus 326 ~ike~~~~~~iP~LVvL~p-qGkv~~ 350 (598)
.+.+.+++++.|+++++|| +|+++.
T Consensus 67 ~~~~~~~~~~~P~~~~i~~~~g~~l~ 92 (114)
T cd02958 67 RFLQSYKVDKYPHIAIIDPRTGEVLK 92 (114)
T ss_pred HHHHHhCccCCCeEEEEeCccCcEeE
Confidence 3456678999999999999 798875
No 92
>PTZ00102 disulphide isomerase; Provisional
Probab=93.40 E-value=0.16 Score=55.26 Aligned_cols=70 Identities=13% Similarity=0.068 Sum_probs=46.4
Q ss_pred cCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
.||.|+|+|.+.|| +|....+. +.++-++.+ ..+.+-+.+|-. |..+
T Consensus 374 ~~k~vlv~f~a~wC~~C~~~~p~-~~~~a~~~~---~~~~v~~~~id~-------~~~~--------------------- 421 (477)
T PTZ00102 374 SDKDVLLEIYAPWCGHCKNLEPV-YNELGEKYK---DNDSIIVAKMNG-------TANE--------------------- 421 (477)
T ss_pred CCCCEEEEEECCCCHHHHHHHHH-HHHHHHHhc---cCCcEEEEEEEC-------CCCc---------------------
Confidence 48999999999998 45555555 777665542 123455555543 2111
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCce
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGMV 348 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv 348 (598)
.+.+.|++++.|+++++++.|++
T Consensus 422 ------~~~~~~~v~~~Pt~~~~~~~~~~ 444 (477)
T PTZ00102 422 ------TPLEEFSWSAFPTILFVKAGERT 444 (477)
T ss_pred ------cchhcCCCcccCeEEEEECCCcc
Confidence 02346688999999999987775
No 93
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=92.87 E-value=0.27 Score=41.78 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=46.2
Q ss_pred cCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
+++.++++|.+.|| +|....+. +.++.+++.. .. .++++-+| .+++. +
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~-~~~~~~~~~~---~~--~~~~~~id-------~~~~~--------------~---- 64 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPE-FTKAATELKE---DG--KGVLAAVD-------CTKPE--------------H---- 64 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHH-HHHHHHHHhh---CC--ceEEEEEE-------CCCCc--------------c----
Confidence 46799999999998 45666666 7888877631 12 35555552 11100 0
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
..+.+.+++++.|+++++. +|+++
T Consensus 65 -----~~~~~~~~i~~~Pt~~~~~-~g~~~ 88 (104)
T cd02997 65 -----DALKEEYNVKGFPTFKYFE-NGKFV 88 (104)
T ss_pred -----HHHHHhCCCccccEEEEEe-CCCee
Confidence 1245667999999987764 67754
No 94
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=92.74 E-value=0.45 Score=42.76 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=40.1
Q ss_pred CcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcccH
Q 039432 242 DKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNS 321 (598)
Q Consensus 242 gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~~ 321 (598)
++.|.++|++.||++|..+...|.++-.+. +..+++.|-+ |+.
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~------~~i~~~~vd~-------d~~------------------------ 64 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS------DKLKLEIYDF-------DED------------------------ 64 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc------CceEEEEEeC-------CcC------------------------
Confidence 566889999999866654433255543321 2344444443 211
Q ss_pred HHHHHHHHhhccCCccEEEEeCCC
Q 039432 322 AVVNLIKQEWNFKEEPIMVVLDSQ 345 (598)
Q Consensus 322 ~~~r~ike~~~~~~iP~LVvL~pq 345 (598)
+.+.+.|++++.|++++++..
T Consensus 65 ---~~l~~~~~v~~vPt~~i~~~g 85 (113)
T cd02975 65 ---KEKAEKYGVERVPTTIFLQDG 85 (113)
T ss_pred ---HHHHHHcCCCcCCEEEEEeCC
Confidence 135677899999999999753
No 95
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=92.51 E-value=1.4 Score=43.73 Aligned_cols=47 Identities=4% Similarity=-0.070 Sum_probs=30.0
Q ss_pred ccCcEEEEEcCCChhHHHHHHHHHHHH-HhcCceeeEEEeccCCchhhH
Q 039432 399 QEGRNICLYGSENKDWIIEFNAKMMEI-RRLGLQVDMVFVGVKNPSEQV 446 (598)
Q Consensus 399 ~egK~I~LYgg~d~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~~~e~v 446 (598)
..+..|-+|......+|+..-+.+.++ .+ ...+.++.|..+...+.+
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~~~~~~~ 179 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEANENPDLA 179 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCCCCHHHH
Confidence 355566767666667788887888888 44 335555566666545544
No 96
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=92.27 E-value=0.53 Score=40.52 Aligned_cols=68 Identities=9% Similarity=0.013 Sum_probs=43.2
Q ss_pred cCcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
.+|.|+++|.+.||+ |....+. +.++-++.. +. +.+.-+ |.++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~-~~~~~~~~~-----~~--~~~~~v-------d~~~--------------------- 61 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPE-LRKAARALK-----GK--VKVGSV-------DCQK--------------------- 61 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHH-HHHHHHHhc-----CC--cEEEEE-------ECCc---------------------
Confidence 367999999999974 4444454 666555531 22 444444 2111
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCce
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGMV 348 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv 348 (598)
.+.+.+.+++++.|+++++.+.|+.
T Consensus 62 ----~~~~~~~~~i~~~Pt~~~~~~g~~~ 86 (104)
T cd03004 62 ----YESLCQQANIRAYPTIRLYPGNASK 86 (104)
T ss_pred ----hHHHHHHcCCCcccEEEEEcCCCCC
Confidence 1235567899999999999876443
No 97
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=92.16 E-value=0.55 Score=37.70 Aligned_cols=63 Identities=17% Similarity=0.202 Sum_probs=40.9
Q ss_pred cEEEEEEecCCCCCh-hhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcccH
Q 039432 243 KVVILLVSKPELLPL-EKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNS 321 (598)
Q Consensus 243 K~VlLyfSal~~~~~-~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~~ 321 (598)
|.++|+|.+.||+.| ...+. |.++.++ ..++.++.|.. +.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~-~~~~~~~------~~~~~~~~i~~-------~~------------------------- 51 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPV-LEELAEE------YPKVKFVKVDV-------DE------------------------- 51 (93)
T ss_pred CcEEEEEECCCChhHHHhhHH-HHHHHHH------CCCceEEEEEC-------CC-------------------------
Confidence 889999999997444 44444 6665544 34566666665 21
Q ss_pred HHHHHHHHhhccCCccEEEEeCCCCc
Q 039432 322 AVVNLIKQEWNFKEEPIMVVLDSQGM 347 (598)
Q Consensus 322 ~~~r~ike~~~~~~iP~LVvL~pqGk 347 (598)
.+.+.+.|++.+.|+++++. +|+
T Consensus 52 --~~~~~~~~~v~~~P~~~~~~-~g~ 74 (93)
T cd02947 52 --NPELAEEYGVRSIPTFLFFK-NGK 74 (93)
T ss_pred --ChhHHHhcCcccccEEEEEE-CCE
Confidence 11234567899999999995 455
No 98
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=92.16 E-value=0.52 Score=40.05 Aligned_cols=64 Identities=11% Similarity=0.025 Sum_probs=41.6
Q ss_pred CcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCccc
Q 039432 242 DKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLN 320 (598)
Q Consensus 242 gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~ 320 (598)
++.|+|+|.+.|| +|+.+.+. +.++.++.. +.+ .++-+ |.++
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~-~~~~~~~~~-----~~~--~~~~i-------d~~~---------------------- 60 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPE-WKKAAKALK-----GIV--KVGAV-------DADV---------------------- 60 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHH-HHHHHHHhc-----CCc--eEEEE-------ECcc----------------------
Confidence 5669999999997 45555566 777776652 223 33333 1111
Q ss_pred HHHHHHHHHhhccCCccEEEEeCCC
Q 039432 321 SAVVNLIKQEWNFKEEPIMVVLDSQ 345 (598)
Q Consensus 321 ~~~~r~ike~~~~~~iP~LVvL~pq 345 (598)
...+.+.|++++.|+++++++.
T Consensus 61 ---~~~~~~~~~i~~~P~~~~~~~~ 82 (103)
T cd03001 61 ---HQSLAQQYGVRGFPTIKVFGAG 82 (103)
T ss_pred ---hHHHHHHCCCCccCEEEEECCC
Confidence 1234567899999999999754
No 99
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=91.34 E-value=0.43 Score=43.98 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=45.4
Q ss_pred cCcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCccc
Q 039432 241 KDKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLN 320 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~ 320 (598)
.+|.|.+.|+|.||+||+.+.+.|.++=++. .+. +.|+-+ |.|+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~-----~~~--v~f~kV-------DvD~---------------------- 56 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDV-----SNF--AVIYLV-------DIDE---------------------- 56 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHc-----cCc--eEEEEE-------ECCC----------------------
Confidence 4678999999999866665433244444432 122 345555 2222
Q ss_pred HHHHHHHHHhhccCCccEEEEeCCCCceech
Q 039432 321 SAVVNLIKQEWNFKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 321 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 351 (598)
..-+.+.|+++++|+++++- +|+.+..
T Consensus 57 ---~~~la~~~~V~~iPTf~~fk-~G~~v~~ 83 (114)
T cd02954 57 ---VPDFNKMYELYDPPTVMFFF-RNKHMKI 83 (114)
T ss_pred ---CHHHHHHcCCCCCCEEEEEE-CCEEEEE
Confidence 11356778999999999997 6777644
No 100
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=90.65 E-value=1.5 Score=41.56 Aligned_cols=103 Identities=12% Similarity=0.099 Sum_probs=63.6
Q ss_pred Cceeecce-ecCcEEEEEEecC-CC-CChhh-hhHHHHHHhcCcCCCCCCCCe-EEEEEEcCCCCCCChHhHHHHHHhhc
Q 039432 232 SEQLGVSE-LKDKVVILLVSKP-EL-LPLEK-LFLLVHQTYDHPHNKNLEESY-KIVWVPISSSETWTDVEERNFELFSC 306 (598)
Q Consensus 232 ~~kV~Is~-L~gK~VlLyfSal-~~-~~~~~-~~~~L~~iY~~l~~~~~~~~f-EIVwIpid~~~~W~D~de~~Fe~~~~ 306 (598)
|..|.+++ ++||.|.|||--. |+ .|..+ +.. |.+.|++++ +.+. +|+-||.|. -...+.|-+-..
T Consensus 18 g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~-~~~~~~~f~----~~g~~~V~~iS~D~-----~~~~~~~~~~~~ 87 (155)
T cd03013 18 PNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPG-YVENADELK----AKGVDEVICVSVND-----PFVMKAWGKALG 87 (155)
T ss_pred CceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHH-HHHhHHHHH----HCCCCEEEEEECCC-----HHHHHHHHHhhC
Confidence 66899999 5887666666555 44 57788 988 999999984 2356 599999842 344666765544
Q ss_pred CCCeeeeecCCcccHHHHHHHHHhhccC------C-----ccEEEEeCCCCceech
Q 039432 307 SLPWYSVRQPQLLNSAVVNLIKQEWNFK------E-----EPIMVVLDSQGMVTNS 351 (598)
Q Consensus 307 ~MPWyAVp~~~~i~~~~~r~ike~~~~~------~-----iP~LVvL~pqGkv~~~ 351 (598)
-. ++|+=+-|. -+.+.+.|++. + .....|+| +|++...
T Consensus 88 ~~----~~f~lLsD~--~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~ 136 (155)
T cd03013 88 AK----DKIRFLADG--NGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYL 136 (155)
T ss_pred CC----CcEEEEECC--CHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEE
Confidence 31 122211121 13344444541 1 46678889 6998753
No 101
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=90.21 E-value=0.24 Score=41.68 Aligned_cols=68 Identities=13% Similarity=0.202 Sum_probs=45.2
Q ss_pred cCcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
.+|.|+++|.+.||+ |....+. |.++-++.. + .|.|+-+ |.++
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~-~~~~~~~~~-----~--~v~~~~v-------d~~~--------------------- 59 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPI-LEKLAKEYK-----D--NVKFAKV-------DCDE--------------------- 59 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHH-HHHHHHHTT-----T--TSEEEEE-------ETTT---------------------
T ss_pred cCCCEEEEEeCCCCCccccccce-ecccccccc-----c--ccccchh-------hhhc---------------------
Confidence 369999999999984 4444455 777777652 1 4455555 2111
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCce
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGMV 348 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv 348 (598)
-+.+.+.|++++.|+++++...+.+
T Consensus 60 ----~~~l~~~~~v~~~Pt~~~~~~g~~~ 84 (103)
T PF00085_consen 60 ----NKELCKKYGVKSVPTIIFFKNGKEV 84 (103)
T ss_dssp ----SHHHHHHTTCSSSSEEEEEETTEEE
T ss_pred ----cchhhhccCCCCCCEEEEEECCcEE
Confidence 1335677899999999999754444
No 102
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=90.10 E-value=0.6 Score=47.60 Aligned_cols=67 Identities=9% Similarity=0.052 Sum_probs=45.9
Q ss_pred CcEEEEEEecCCCCC-hhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCccc
Q 039432 242 DKVVILLVSKPELLP-LEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLN 320 (598)
Q Consensus 242 gK~VlLyfSal~~~~-~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~ 320 (598)
++.++++|.+.||++ ....+. +.++.+++. +. |.+.-+ |.++.
T Consensus 52 ~~~vlV~FyApWC~~Ck~~~P~-~e~la~~~~-----~~--v~~~~V-------D~~~~--------------------- 95 (224)
T PTZ00443 52 TGPWFVKFYAPWCSHCRKMAPA-WERLAKALK-----GQ--VNVADL-------DATRA--------------------- 95 (224)
T ss_pred CCCEEEEEECCCChHHHHHHHH-HHHHHHHcC-----CC--eEEEEe-------cCccc---------------------
Confidence 478999999999854 455565 777777763 22 444444 21211
Q ss_pred HHHHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 321 SAVVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 321 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
..+.+.|++++.|++++++ +|+++
T Consensus 96 ----~~l~~~~~I~~~PTl~~f~-~G~~v 119 (224)
T PTZ00443 96 ----LNLAKRFAIKGYPTLLLFD-KGKMY 119 (224)
T ss_pred ----HHHHHHcCCCcCCEEEEEE-CCEEE
Confidence 1356788999999999998 78765
No 103
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=90.06 E-value=1.2 Score=39.62 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=52.9
Q ss_pred CcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcccH
Q 039432 242 DKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNS 321 (598)
Q Consensus 242 gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~~ 321 (598)
++.|.++|.+.||++|..+...|.++-++.. .+.|+-+ |.++
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--------~v~f~~v-------d~~~----------------------- 65 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP--------ETKFVKI-------NAEK----------------------- 65 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--------CcEEEEE-------Echh-----------------------
Confidence 5899999999997555543332555554431 1455555 2111
Q ss_pred HHHHHHHHhhccCCccEEEEeCCCCceechhHHHHHHHhCcCccCCCchhHHh
Q 039432 322 AVVNLIKQEWNFKEEPIMVVLDSQGMVTNSNALDMVLIWGARGYPFSVTREIE 374 (598)
Q Consensus 322 ~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AfPFT~~r~e~ 374 (598)
. .|.+.|++++.|+++++. +|+.+..- .+.....| -.|+.+.++.
T Consensus 66 ~---~l~~~~~i~~~Pt~~~f~-~G~~v~~~-~G~~~~~~---~~~~~~~l~~ 110 (113)
T cd02957 66 A---FLVNYLDIKVLPTLLVYK-NGELIDNI-VGFEELGG---DDFTTEDLEK 110 (113)
T ss_pred h---HHHHhcCCCcCCEEEEEE-CCEEEEEE-ecHHHhCC---CCCCHHHHHH
Confidence 1 456778999999999886 57776321 22334455 6666666553
No 104
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=89.66 E-value=1.1 Score=40.35 Aligned_cols=77 Identities=4% Similarity=-0.051 Sum_probs=45.9
Q ss_pred CcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCccc
Q 039432 242 DKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLN 320 (598)
Q Consensus 242 gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~ 320 (598)
+|.|+++|.+.||+ |....+. +.++.++++. ..+. |.+.-+ |.+.+.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~-~~~la~~~~~--~~~~--v~~~~v-------d~~~~~-------------------- 66 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPT-WKKLARDLRK--WRPV--VRVAAV-------DCADEE-------------------- 66 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHH-HHHHHHHHHh--cCCc--eEEEEE-------eccchh--------------------
Confidence 47999999999984 4455555 7777776521 1112 333333 111111
Q ss_pred HHHHHHHHHhhccCCccEEEEeCCCCceechhHH
Q 039432 321 SAVVNLIKQEWNFKEEPIMVVLDSQGMVTNSNAL 354 (598)
Q Consensus 321 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~ 354 (598)
...+.+.|++++.|+++++.+.+ ....+|.
T Consensus 67 ---~~~~~~~~~i~~~Pt~~lf~~~~-~~~~~~~ 96 (114)
T cd02992 67 ---NVALCRDFGVTGYPTLRYFPPFS-KEATDGL 96 (114)
T ss_pred ---hHHHHHhCCCCCCCEEEEECCCC-ccCCCCC
Confidence 12345678999999999996544 5544443
No 105
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=89.64 E-value=0.88 Score=43.69 Aligned_cols=30 Identities=3% Similarity=-0.329 Sum_probs=21.6
Q ss_pred cCcEEEEEEecCCCCChh-hhhHHHHHHhcCc
Q 039432 241 KDKVVILLVSKPELLPLE-KLFLLVHQTYDHP 271 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~~-~~~~~L~~iY~~l 271 (598)
+++.|+++|.+.||++|. ..+. +.++.++.
T Consensus 46 ~~~~vvV~Fya~wC~~Ck~l~p~-l~~la~~~ 76 (152)
T cd02962 46 KRVTWLVEFFTTWSPECVNFAPV-FAELSLKY 76 (152)
T ss_pred CCCEEEEEEECCCCHHHHHHHHH-HHHHHHHc
Confidence 467999999999985454 4444 77776664
No 106
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=89.24 E-value=1.4 Score=35.89 Aligned_cols=36 Identities=8% Similarity=0.110 Sum_probs=21.9
Q ss_pred EEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEc
Q 039432 247 LLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPI 287 (598)
Q Consensus 247 LyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpi 287 (598)
.+|++.||+.|......|.++.++. +.+++++.|-+
T Consensus 4 ~~f~~~~C~~C~~~~~~l~~l~~~~-----~~~~~~~~vd~ 39 (82)
T TIGR00411 4 ELFTSPTCPYCPAAKRVVEEVAKEM-----GDAVEVEYINV 39 (82)
T ss_pred EEEECCCCcchHHHHHHHHHHHHHh-----cCceEEEEEeC
Confidence 4677899855544433377776664 23466666665
No 107
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=89.23 E-value=0.77 Score=41.30 Aligned_cols=69 Identities=12% Similarity=0.234 Sum_probs=44.9
Q ss_pred cCcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCccc
Q 039432 241 KDKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLN 320 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~ 320 (598)
+++.|.++|.+.||++|..+...|.++-++. .+ +.|+-+ |.++
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~------~~--i~f~~V-------d~~~---------------------- 63 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKH------LE--TKFIKV-------NAEK---------------------- 63 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHc------CC--CEEEEE-------Eccc----------------------
Confidence 3578999999999855554433355554442 11 455666 2122
Q ss_pred HHHHHHHHHhhccCCccEEEEeCCCCceec
Q 039432 321 SAVVNLIKQEWNFKEEPIMVVLDSQGMVTN 350 (598)
Q Consensus 321 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 350 (598)
...+.+.|+++++|+++++. +|+++.
T Consensus 64 ---~~~l~~~~~v~~vPt~l~fk-~G~~v~ 89 (113)
T cd02989 64 ---APFLVEKLNIKVLPTVILFK-NGKTVD 89 (113)
T ss_pred ---CHHHHHHCCCccCCEEEEEE-CCEEEE
Confidence 12366888999999999997 677663
No 108
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=87.52 E-value=1.6 Score=43.94 Aligned_cols=102 Identities=12% Similarity=0.255 Sum_probs=71.3
Q ss_pred eeecceecCcEEEEEEecCC--CCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCC---CCChHhHHHHHHhhcCC
Q 039432 234 QLGVSELKDKVVILLVSKPE--LLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSE---TWTDVEERNFELFSCSL 308 (598)
Q Consensus 234 kV~Is~L~gK~VlLyfSal~--~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~---~W~D~de~~Fe~~~~~M 308 (598)
+|..++..||.+.|||=-.| ..|.-|+.. +...|++.+ +.+-||+-||+|.+. .|.+.-+++..- .
T Consensus 25 ~i~l~d~~gkw~VLff~P~DFTfVCpTEi~a-f~~~y~eF~----~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi--~-- 95 (194)
T COG0450 25 EITLSDYYGKWVVLFFYPADFTFVCPTEIIA-FAKRYEEFQ----KRGVEVIGVSTDSVFSHKAWKATIREAGGI--G-- 95 (194)
T ss_pred EEechhhcCcEEEEEeccCCCCccCcchHHH-HHhhhHHHH----HcCCEEEEEecCcHHHHHHHHhcHHhcCCc--c--
Confidence 89999999999999999888 478889988 899999984 457999999995421 144333322211 0
Q ss_pred CeeeeecCCcccHHHHHHHHHhhccCCc------cEEEEeCCCCcee
Q 039432 309 PWYSVRQPQLLNSAVVNLIKQEWNFKEE------PIMVVLDSQGMVT 349 (598)
Q Consensus 309 PWyAVp~~~~i~~~~~r~ike~~~~~~i------P~LVvL~pqGkv~ 349 (598)
-|+||-. ....+.|.+.|++-.- =.+.|+||+|++-
T Consensus 96 ---~i~~Pmi--aD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir 137 (194)
T COG0450 96 ---KIKFPMI--ADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIR 137 (194)
T ss_pred ---ceecceE--EcCchhHHHHcCCcccCCCcceeEEEEECCCCeEE
Confidence 1556532 2335677777887542 3578999999874
No 109
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=86.81 E-value=2.5 Score=38.90 Aligned_cols=69 Identities=9% Similarity=0.166 Sum_probs=44.4
Q ss_pred CcEEEEEEecCC--CCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 242 DKVVILLVSKPE--LLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 242 gK~VlLyfSal~--~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
|..+.|+|++.| ||+|.++.+.|.++=++. ++...++-|=+ |++
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~leela~e~-----~~~v~f~kVdi-------d~~---------------------- 72 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAF-----PGRFRAAVVGR-------ADE---------------------- 72 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHHHHHHHC-----CCcEEEEEEEC-------CCC----------------------
Confidence 467778899997 877777655366655443 23344444333 211
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCceec
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGMVTN 350 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 350 (598)
..|.++|+++++|+|+++- +|+.+.
T Consensus 73 -----~~la~~f~V~sIPTli~fk-dGk~v~ 97 (111)
T cd02965 73 -----QALAARFGVLRTPALLFFR-DGRYVG 97 (111)
T ss_pred -----HHHHHHcCCCcCCEEEEEE-CCEEEE
Confidence 1466778999999999986 577664
No 110
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=85.56 E-value=2.7 Score=38.47 Aligned_cols=67 Identities=15% Similarity=0.285 Sum_probs=48.0
Q ss_pred cCCceeecceecCcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEc-C--CCCCCChHhHHHH
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPI-S--SSETWTDVEERNF 301 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpi-d--~~~~W~D~de~~F 301 (598)
.+|..|+++.++||.+++.=-|..|.-.+.... |+++|++.. ...|+|+-.|. + .-+++++++-+.|
T Consensus 9 ~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~qy~~-L~~L~~ky~----~~gl~ILaFPcnqFg~QEp~~~~ei~~~ 78 (108)
T PF00255_consen 9 IDGKPVSLSKYKGKVLLIVNVASKCGYTKQYKQ-LNELYEKYK----DKGLEILAFPCNQFGNQEPGSNEEIKEF 78 (108)
T ss_dssp TTSSEEEGGGGTTSEEEEEEEESSSTTHHHHHH-HHHHHHHHG----GGTEEEEEEEBSTTTTTTSSCHHHHHHH
T ss_pred CCCCEECHHHcCCCEEEEEecccccCCccccHH-HHHHHHHHh----cCCeEEEeeehHHhccccCCCHHHHHHH
Confidence 467899999999999888888888644445666 889999884 24699999998 2 1234444444443
No 111
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=85.40 E-value=1.9 Score=39.12 Aligned_cols=73 Identities=18% Similarity=0.283 Sum_probs=46.7
Q ss_pred CcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcccH
Q 039432 242 DKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNS 321 (598)
Q Consensus 242 gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~~ 321 (598)
+|-|.+.|+|.||+||..+.+ .|++|. ..-.+ ++|+=+|. |+
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P----~~~~La--~~y~~--v~Flkvdv-------de----------------------- 62 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAP----KFEKLA--EKYPD--VVFLKVDV-------DE----------------------- 62 (106)
T ss_pred CCeEEEEEECCCCcchhhhhh----HHHHHH--HHCCC--CEEEEEec-------cc-----------------------
Confidence 699999999999877877655 344442 11122 56766621 21
Q ss_pred HHHHHHHHhhccCCccEEEEeCC---CCceechhHH
Q 039432 322 AVVNLIKQEWNFKEEPIMVVLDS---QGMVTNSNAL 354 (598)
Q Consensus 322 ~~~r~ike~~~~~~iP~LVvL~p---qGkv~~~nA~ 354 (598)
.+-+.+.|+++..|+++.+-. .++++..|..
T Consensus 63 --~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~~ 96 (106)
T KOG0907|consen 63 --LEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANKA 96 (106)
T ss_pred --CHhHHHhcCceEeeEEEEEECCEEEEEEecCCHH
Confidence 334567789999999999942 2455544444
No 112
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=85.37 E-value=3.5 Score=29.47 Aligned_cols=61 Identities=13% Similarity=0.060 Sum_probs=38.1
Q ss_pred EEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcccHHHHH
Q 039432 247 LLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNSAVVN 325 (598)
Q Consensus 247 LyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~~~~~r 325 (598)
++|.+.||+ |...... +.++ . ....++++++++++ ...+..+.
T Consensus 2 ~~~~~~~c~~c~~~~~~-~~~~-~-----~~~~~~~~~~~~~~-------~~~~~~~~---------------------- 45 (69)
T cd01659 2 VLFYAPWCPFCQALRPV-LAEL-A-----LLNKGVKFEAVDVD-------EDPALEKE---------------------- 45 (69)
T ss_pred EEEECCCChhHHhhhhH-HHHH-H-----hhCCCcEEEEEEcC-------CChHHhhH----------------------
Confidence 567777764 4444444 6666 2 23457999999972 11111111
Q ss_pred HHHHhhccCCccEEEEeCCC
Q 039432 326 LIKQEWNFKEEPIMVVLDSQ 345 (598)
Q Consensus 326 ~ike~~~~~~iP~LVvL~pq 345 (598)
...+++...|.+++.+++
T Consensus 46 --~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 46 --LKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred --HHhCCCccccEEEEEeCC
Confidence 455788899999999886
No 113
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=85.21 E-value=1.7 Score=39.54 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=43.3
Q ss_pred ecCcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCc
Q 039432 240 LKDKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQL 318 (598)
Q Consensus 240 L~gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~ 318 (598)
-.+|.|++.|.|.||+ |+...+. +.++-++++ +. +.++-+ |.++.
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l~p~-~~~la~~~~-----~~--v~~~~V-------d~d~~------------------- 72 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAARQE-FEQVAQKLS-----DQ--VLFVAI-------NCWWP------------------- 72 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHH-HHHHHHHhc-----CC--eEEEEE-------ECCCC-------------------
Confidence 4679999999999984 4444455 666655542 22 666776 22211
Q ss_pred ccHHHHHHHHHhhccCCccEEEEeCCCCc
Q 039432 319 LNSAVVNLIKQEWNFKEEPIMVVLDSQGM 347 (598)
Q Consensus 319 i~~~~~r~ike~~~~~~iP~LVvL~pqGk 347 (598)
. ...++++++++.|++.++ .+|+
T Consensus 73 --~---~l~~~~~~I~~~PTl~lf-~~g~ 95 (113)
T cd03006 73 --Q---GKCRKQKHFFYFPVIHLY-YRSR 95 (113)
T ss_pred --h---HHHHHhcCCcccCEEEEE-ECCc
Confidence 0 112356789999999999 5665
No 114
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=84.93 E-value=2.3 Score=41.46 Aligned_cols=87 Identities=11% Similarity=0.087 Sum_probs=53.9
Q ss_pred CcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcccH
Q 039432 242 DKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNS 321 (598)
Q Consensus 242 gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~~ 321 (598)
++.|.++|.+.||++|.-+...|.++-.+. -+|.|+-| |.++
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~--------~~vkF~kV-------d~d~----------------------- 124 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEY--------PAVKFCKI-------RASA----------------------- 124 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHC--------CCeEEEEE-------eccc-----------------------
Confidence 469999999999866654433244443331 14778887 2221
Q ss_pred HHHHHHHHhhccCCccEEEEeCCCCceech-hHHHHHHHhCcCccCCCchhHHhh
Q 039432 322 AVVNLIKQEWNFKEEPIMVVLDSQGMVTNS-NALDMVLIWGARGYPFSVTREIEL 375 (598)
Q Consensus 322 ~~~r~ike~~~~~~iP~LVvL~pqGkv~~~-nA~~mI~~wG~~AfPFT~~r~e~L 375 (598)
. .+.+.|+++.+|+++++- +|+.+.. .+. ...|.. =|+.+++|..
T Consensus 125 ~---~l~~~f~v~~vPTlllyk-~G~~v~~~vG~---~~~~g~--~f~~~~le~~ 170 (175)
T cd02987 125 T---GASDEFDTDALPALLVYK-GGELIGNFVRV---TEDLGE--DFDAEDLESF 170 (175)
T ss_pred h---hhHHhCCCCCCCEEEEEE-CCEEEEEEech---HHhcCC--CCCHHHHHHH
Confidence 1 355677999999999986 5877742 232 233444 5777766643
No 115
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=84.91 E-value=0.54 Score=34.65 Aligned_cols=31 Identities=13% Similarity=0.408 Sum_probs=23.3
Q ss_pred CCcccccccCCCCCccceeecCCCCccceeee
Q 039432 564 PCSHPNVLHYAEGSREGIVVCEKCKRLLKMFV 595 (598)
Q Consensus 564 ~C~~~~~~p~~~g~ip~~i~CpeC~R~ME~~v 595 (598)
.|.+.+++....+. .+.+.||+||..+++-+
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~r~~ 40 (41)
T smart00834 10 DCGHTFEVLQKISD-DPLATCPECGGDVRRLI 40 (41)
T ss_pred CCCCEEEEEEecCC-CCCCCCCCCCCcceecc
Confidence 47776776654444 78999999999888754
No 116
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=84.76 E-value=2.1 Score=36.13 Aligned_cols=40 Identities=13% Similarity=0.092 Sum_probs=27.8
Q ss_pred CcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEc
Q 039432 242 DKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPI 287 (598)
Q Consensus 242 gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpi 287 (598)
||.|+|+|.+.|| +|..+.+. +.++.+.+.. .. .+.+.-+
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~-~~~~~~~~~~---~~--~~~~~~i 58 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPI-YEELAEKLKG---DD--NVVIAKM 58 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhH-HHHHHHHhcC---CC--CEEEEEE
Confidence 5899999999998 55566666 7888777631 12 3566666
No 117
>PTZ00102 disulphide isomerase; Provisional
Probab=84.16 E-value=1.2 Score=48.53 Aligned_cols=71 Identities=15% Similarity=0.150 Sum_probs=48.9
Q ss_pred cCcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
+++.++++|-+.||+ |....+. +.++.++++ +....|++..+ |.++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~-~~~~a~~~~----~~~~~i~~~~v-------d~~~--------------------- 94 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPE-YKKAAKMLK----EKKSEIVLASV-------DATE--------------------- 94 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHH-HHHHHHHHH----hcCCcEEEEEE-------ECCC---------------------
Confidence 478999999999984 4444455 666666652 22346888887 3221
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCce
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGMV 348 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv 348 (598)
-+.+.++|++++.|+++++...+++
T Consensus 95 ----~~~l~~~~~i~~~Pt~~~~~~g~~~ 119 (477)
T PTZ00102 95 ----EMELAQEFGVRGYPTIKFFNKGNPV 119 (477)
T ss_pred ----CHHHHHhcCCCcccEEEEEECCceE
Confidence 1236777899999999999876554
No 118
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=84.12 E-value=2 Score=38.96 Aligned_cols=48 Identities=27% Similarity=0.530 Sum_probs=35.4
Q ss_pred cCcEEEEEcCCChhHH---HHHHHHHHHH-Hh-cC--ceeeEEEeccCCchhhHHHH
Q 039432 400 EGRNICLYGSENKDWI---IEFNAKMMEI-RR-LG--LQVDMVFVGVKNPSEQVRNV 449 (598)
Q Consensus 400 egK~I~LYgg~d~~Wi---r~FT~~l~~i-~~-~~--~~~E~v~Vgkd~~~e~v~~~ 449 (598)
.||.+.|||.+ .|| ++..+.+.++ ++ ++ ..+++++|+-|...+.+++.
T Consensus 16 ~Gk~vll~F~a--twC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~ 70 (132)
T cd02964 16 EGKTVGLYFSA--SWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEY 70 (132)
T ss_pred CCCEEEEEEEC--CCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHH
Confidence 79999999988 565 8888888877 43 22 47999999988554444433
No 119
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=84.06 E-value=1.3 Score=47.59 Aligned_cols=68 Identities=12% Similarity=0.077 Sum_probs=46.1
Q ss_pred cCcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
++|.++++|.+.||+ |....+. +.++.+.+.. . .-.|.|+-+ |.++.
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~-~~~~a~~~~~--~--~~~v~~~~v-------d~~~~-------------------- 64 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPE-YEKAADELKK--K--GPPIKLAKV-------DATEE-------------------- 64 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHH-HHHHHHHHhh--c--CCceEEEEE-------ECCCc--------------------
Confidence 468899999999984 4555566 7777777631 1 224677776 22211
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCC
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQ 345 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pq 345 (598)
+.+.+++++++.|+++++...
T Consensus 65 -----~~l~~~~~i~~~Pt~~~~~~g 85 (462)
T TIGR01130 65 -----KDLAQKYGVSGYPTLKIFRNG 85 (462)
T ss_pred -----HHHHHhCCCccccEEEEEeCC
Confidence 235677899999999999643
No 120
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=83.16 E-value=4.6 Score=34.35 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=40.6
Q ss_pred CcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcccH
Q 039432 242 DKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNS 321 (598)
Q Consensus 242 gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~~ 321 (598)
||.++++|.+.||.+++.+...|.++=++. ++++.++||-. | + | +
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~-----~~~v~f~~vd~-------~--~--~--------------~----- 56 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKF-----KGKLLFVVVDA-------D--D--F--------------G----- 56 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHh-----CCeEEEEEEch-------H--h--h--------------H-----
Confidence 889999999999533443333244444443 24566777654 2 2 1 1
Q ss_pred HHHHHHHHhhccC--CccEEEEeCC
Q 039432 322 AVVNLIKQEWNFK--EEPIMVVLDS 344 (598)
Q Consensus 322 ~~~r~ike~~~~~--~iP~LVvL~p 344 (598)
.+.+.|+++ +.|++++++.
T Consensus 57 ----~~~~~~~i~~~~~P~~~~~~~ 77 (103)
T cd02982 57 ----RHLEYFGLKEEDLPVIAIINL 77 (103)
T ss_pred ----HHHHHcCCChhhCCEEEEEec
Confidence 134556888 9999999987
No 121
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=82.81 E-value=2.6 Score=37.89 Aligned_cols=50 Identities=24% Similarity=0.405 Sum_probs=36.5
Q ss_pred cCcEEEEEcCCC-hhHHHHHHHHHHHH-Hh---cCceeeEEEeccCCchhhHHHH
Q 039432 400 EGRNICLYGSEN-KDWIIEFNAKMMEI-RR---LGLQVDMVFVGVKNPSEQVRNV 449 (598)
Q Consensus 400 egK~I~LYgg~d-~~Wir~FT~~l~~i-~~---~~~~~E~v~Vgkd~~~e~v~~~ 449 (598)
.||++.|||.+. ...|++..+.+.++ ++ ++..+++++|+-|...+.+++-
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~ 71 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDY 71 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHH
Confidence 799999999883 23458888888877 43 3357999999998665544433
No 122
>smart00594 UAS UAS domain.
Probab=82.76 E-value=5.1 Score=36.39 Aligned_cols=22 Identities=14% Similarity=0.353 Sum_probs=18.9
Q ss_pred HHHHHhhccCCccEEEEeCCCC
Q 039432 325 NLIKQEWNFKEEPIMVVLDSQG 346 (598)
Q Consensus 325 r~ike~~~~~~iP~LVvL~pqG 346 (598)
..+.+.+++.+-|++++++|+|
T Consensus 76 ~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 76 QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred HHHHHhcCcCCCCEEEEEecCC
Confidence 3466778999999999999997
No 123
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=81.93 E-value=1.6 Score=40.06 Aligned_cols=43 Identities=5% Similarity=0.217 Sum_probs=35.1
Q ss_pred ccccCcEEEEEcCCC-hhHHHHHHHHHHHH-HhcCceeeEEEeccCC
Q 039432 397 WVQEGRNICLYGSEN-KDWIIEFNAKMMEI-RRLGLQVDMVFVGVKN 441 (598)
Q Consensus 397 ~i~egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~ 441 (598)
.+..|+++.+|||.. ..|||.|.|.+.++ ++ ....++||-.|.
T Consensus 19 ~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~ 63 (122)
T TIGR01295 19 ALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSEN 63 (122)
T ss_pred HHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCC
Confidence 466899999999997 47889999999999 65 346788888873
No 124
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=81.89 E-value=3.5 Score=44.26 Aligned_cols=69 Identities=10% Similarity=0.054 Sum_probs=44.9
Q ss_pred cCcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
.+|.|+++|.+.||. |....+. +.++.+++.. ..+++.++.|-+ +.. . .+
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~-~~~~~~~~~~--~~~~i~~~~id~-------~~n--~--------------~~--- 413 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPI-YEELAEKYKD--AESDVVIAKMDA-------TAN--D--------------VP--- 413 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHH-HHHHHHHhhc--CCCcEEEEEEEC-------CCC--c--------------cC---
Confidence 489999999999984 4455566 7888777631 123566666554 111 0 00
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCCce
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQGMV 348 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqGkv 348 (598)
. +++++.|+++++...+++
T Consensus 414 ---------~-~~i~~~Pt~~~~~~~~~~ 432 (462)
T TIGR01130 414 ---------P-FEVEGFPTIKFVPAGKKS 432 (462)
T ss_pred ---------C-CCccccCEEEEEeCCCCc
Confidence 1 478899999999766653
No 125
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=80.89 E-value=2.4 Score=44.57 Aligned_cols=62 Identities=8% Similarity=0.103 Sum_probs=48.8
Q ss_pred cccccCCceeecceecCcEEEEEEecCCC--CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCC
Q 039432 226 DLIAMKSEQLGVSELKDKVVILLVSKPEL--LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISS 289 (598)
Q Consensus 226 ~L~~~~~~kV~Is~L~gK~VlLyfSal~~--~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~ 289 (598)
.|+...|..|.-.+|+||=+++||.-.-| +|+||+-. |.++-++++++..-... =|||++|+
T Consensus 123 ~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeK-m~~~Vd~i~~~~~~~~~-PlFIsvDP 186 (280)
T KOG2792|consen 123 SLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEK-MSAVVDEIEAKPGLPPV-PLFISVDP 186 (280)
T ss_pred EEEecCCCeecccccccceEEEEecccCCCCcChHHHHH-HHHHHHHHhccCCCCcc-ceEEEeCc
Confidence 35567888999999999999999998775 79999999 99999999533222233 79999944
No 126
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=79.62 E-value=1.1 Score=34.09 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=23.7
Q ss_pred CCcccccccCCCCCccceeecCCCCc-cceeeee
Q 039432 564 PCSHPNVLHYAEGSREGIVVCEKCKR-LLKMFVV 596 (598)
Q Consensus 564 ~C~~~~~~p~~~g~ip~~i~CpeC~R-~ME~~v~ 596 (598)
.|.+.+++--.-+. ++.+.||+||. .+++-++
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r~~S 42 (42)
T PF09723_consen 10 ECGHEFEVLQSISE-DDPVPCPECGSTEVRRVIS 42 (42)
T ss_pred CCCCEEEEEEEcCC-CCCCcCCCCCCCceEEecC
Confidence 47765666544455 89999999999 8887653
No 127
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=79.53 E-value=9.3 Score=33.21 Aligned_cols=26 Identities=4% Similarity=-0.051 Sum_probs=19.0
Q ss_pred cceecCcEEEEEEecCCCCChhhhhH
Q 039432 237 VSELKDKVVILLVSKPELLPLEKLFL 262 (598)
Q Consensus 237 Is~L~gK~VlLyfSal~~~~~~~~~~ 262 (598)
+++|+++.-..+|.+.||+.|..+..
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~ 32 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQ 32 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHH
Confidence 35688998888899999865654433
No 128
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=77.55 E-value=5.1 Score=45.18 Aligned_cols=68 Identities=10% Similarity=0.079 Sum_probs=43.6
Q ss_pred cCcEEEEEEecCCCCCh-hhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPELLPL-EKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~-~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
++|.|++.|.+.||++| ...+. +.++.+++. +.+..++.|=+ |.++
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~-~eelA~~~~----~~~v~~~kVdv-------D~~~--------------------- 416 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEAS-YLELAEKLA----GSGVKVAKFRA-------DGDQ--------------------- 416 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHH-HHHHHHHhc----cCCcEEEEEEC-------CCCc---------------------
Confidence 68899999999998544 44455 777776652 22344444444 2111
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCC
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQ 345 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pq 345 (598)
.....+.|++++.|+++++...
T Consensus 417 ----~~~~~~~~~I~~~PTii~Fk~g 438 (463)
T TIGR00424 417 ----KEFAKQELQLGSFPTILFFPKH 438 (463)
T ss_pred ----cHHHHHHcCCCccceEEEEECC
Confidence 1123456799999999999654
No 129
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=77.14 E-value=3.8 Score=38.27 Aligned_cols=77 Identities=9% Similarity=0.119 Sum_probs=42.5
Q ss_pred ecceecCcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeee
Q 039432 236 GVSELKDKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVR 314 (598)
Q Consensus 236 ~Is~L~gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp 314 (598)
.+..+.++.-.|.|...||+ |...+|. |.++=+.. .+.++=+|+- |++.+-.+.
T Consensus 35 ~l~~~~~~~~ilvi~e~WCgD~~~~vP~-l~kiae~~------p~i~~~~i~r-------d~~~el~~~----------- 89 (129)
T PF14595_consen 35 KLKSIQKPYNILVITETWCGDCARNVPV-LAKIAEAN------PNIEVRIILR-------DENKELMDQ----------- 89 (129)
T ss_dssp HHHT--S-EEEEEE--TT-HHHHHHHHH-HHHHHHH-------TTEEEEEE-H-------HHHHHHTTT-----------
T ss_pred HHHhcCCCcEEEEEECCCchhHHHHHHH-HHHHHHhC------CCCeEEEEEe-------cCChhHHHH-----------
Confidence 34556778889999999963 5566777 77777763 2577778775 544433211
Q ss_pred cCCcccHHHHHHHHHhhccCCccEEEEeCCCCceec
Q 039432 315 QPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTN 350 (598)
Q Consensus 315 ~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 350 (598)
|+. .+.+.||++|++|.+|+++.
T Consensus 90 -----------~lt--~g~~~IP~~I~~d~~~~~lg 112 (129)
T PF14595_consen 90 -----------YLT--NGGRSIPTFIFLDKDGKELG 112 (129)
T ss_dssp -----------TTT---SS--SSEEEEE-TT--EEE
T ss_pred -----------HHh--CCCeecCEEEEEcCCCCEeE
Confidence 121 46778999999999999873
No 130
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=71.69 E-value=16 Score=30.41 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.5
Q ss_pred hhccCCccEEEEeCCCCcee
Q 039432 330 EWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 330 ~~~~~~iP~LVvL~pqGkv~ 349 (598)
.+++.++|++++ +|+++
T Consensus 44 ~~~v~~vPti~i---~G~~~ 60 (76)
T TIGR00412 44 EAGVTATPGVAV---DGELV 60 (76)
T ss_pred HcCCCcCCEEEE---CCEEE
Confidence 368999999999 88777
No 131
>PF13728 TraF: F plasmid transfer operon protein
Probab=70.09 E-value=9.2 Score=38.67 Aligned_cols=87 Identities=11% Similarity=0.185 Sum_probs=57.8
Q ss_pred eeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeee
Q 039432 234 QLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYS 312 (598)
Q Consensus 234 kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyA 312 (598)
+--|..+.++.=++||-..+| .|+.+.++ |..+=++ -.++|+-||+|. ..+| +
T Consensus 112 ~~~l~~la~~~gL~~F~~~~C~~C~~~~pi-l~~~~~~-------yg~~v~~vs~DG----------------~~~~--~ 165 (215)
T PF13728_consen 112 DKALKQLAQKYGLFFFYRSDCPYCQQQAPI-LQQFADK-------YGFSVIPVSLDG----------------RPIP--S 165 (215)
T ss_pred HHHHHHHhhCeEEEEEEcCCCchhHHHHHH-HHHHHHH-------hCCEEEEEecCC----------------CCCc--C
Confidence 456778888888888888897 45566666 5555444 359999999931 1223 2
Q ss_pred eecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceech
Q 039432 313 VRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 313 Vp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~ 351 (598)
+|.+- . -.-+.+.|++..-|+|++++|+++...+
T Consensus 166 fp~~~-~----~~g~~~~l~v~~~Pal~Lv~~~~~~~~p 199 (215)
T PF13728_consen 166 FPNPR-P----DPGQAKRLGVKVTPALFLVNPNTKKWYP 199 (215)
T ss_pred CCCCC-C----CHHHHHHcCCCcCCEEEEEECCCCeEEE
Confidence 22221 1 2235567799999999999998854443
No 132
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=69.06 E-value=45 Score=34.44 Aligned_cols=100 Identities=9% Similarity=0.149 Sum_probs=54.0
Q ss_pred cCcEEEEEEecCCCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEc---CC-CC-----CCChHhH-HHHHHhhcCCC
Q 039432 241 KDKVVILLVSKPELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPI---SS-SE-----TWTDVEE-RNFELFSCSLP 309 (598)
Q Consensus 241 ~gK~VlLyfSal~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpi---d~-~~-----~W~D~de-~~Fe~~~~~MP 309 (598)
.+|++...|++.+|| |+++-.. +.+. .+ .++.+|.|+|. .. +. -|...|+ +.++.+.....
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~-l~~~-~~------~g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~ 187 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQ-ARPW-VD------SGKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGG 187 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHH-HHHH-hh------cCceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhh
Confidence 578999999999985 4444444 4432 22 13466777774 11 11 1433333 33444443332
Q ss_pred eeeeecCCcccHHHHH------HHHHhhccCCccEEEEeCCCCce
Q 039432 310 WYSVRQPQLLNSAVVN------LIKQEWNFKEEPIMVVLDSQGMV 348 (598)
Q Consensus 310 WyAVp~~~~i~~~~~r------~ike~~~~~~iP~LVvL~pqGkv 348 (598)
--.+......+.+..+ .+-+.++++|-|++|+.|.+|++
T Consensus 188 ~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~ 232 (251)
T PRK11657 188 KLGLKPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTL 232 (251)
T ss_pred ccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCE
Confidence 1111111111112222 35578999999999999999985
No 133
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=68.95 E-value=3.3 Score=34.70 Aligned_cols=20 Identities=25% Similarity=0.210 Sum_probs=16.0
Q ss_pred cCcEEEEEEecCCCCChhhh
Q 039432 241 KDKVVILLVSKPELLPLEKL 260 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~~~~ 260 (598)
+||.|+++|++.||+.|..+
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l 35 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKL 35 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHH
T ss_pred cCCCEEEEEECCCCHhHHHH
Confidence 58999999999997555443
No 134
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=68.89 E-value=11 Score=34.93 Aligned_cols=44 Identities=16% Similarity=0.114 Sum_probs=32.0
Q ss_pred cccCcEEEEEcCCC-hhHHHHHHHHH---HHH-HhcCceeeEEEeccCC
Q 039432 398 VQEGRNICLYGSEN-KDWIIEFNAKM---MEI-RRLGLQVDMVFVGVKN 441 (598)
Q Consensus 398 i~egK~I~LYgg~d-~~Wir~FT~~l---~~i-~~~~~~~E~v~Vgkd~ 441 (598)
.++||.|+|++|+| ..||+.+.... .+| +..+..|..|.|-.+.
T Consensus 12 k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~ 60 (124)
T cd02955 12 RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREE 60 (124)
T ss_pred HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCc
Confidence 45899999999997 47888886643 355 4445578888887663
No 135
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=67.75 E-value=5.6 Score=39.80 Aligned_cols=123 Identities=12% Similarity=0.216 Sum_probs=78.5
Q ss_pred eeecceecCcEEEEEEecCC--CCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCC---CChHhHHHHHHhhcCC
Q 039432 234 QLGVSELKDKVVILLVSKPE--LLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSET---WTDVEERNFELFSCSL 308 (598)
Q Consensus 234 kV~Is~L~gK~VlLyfSal~--~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~---W~D~de~~Fe~~~~~M 308 (598)
+++++.++||+|+|+|=.++ ..|+.++.. ...-|.+.+ +-+-||+.+|.|+... |.-..+++ .-+..|
T Consensus 25 e~~L~dy~gkyvvlfFyplDftfVcPteIia-fSd~~~eF~----~~n~eVig~S~DS~fshlAW~ntprk~--gGlg~~ 97 (196)
T KOG0852|consen 25 EIKLSDYKGKYVVLFFYPLDFTFVCPTEIIA-FSDRAPEFR----KLNTEVLGISTDSVFSHLAWINTPRKQ--GGLGPL 97 (196)
T ss_pred EEeehhhcccEEEEEecCCceeeECchhhhh-hhhhHHHHH----hcCCeEEEEeccchhhhhhHhcCchhh--CCcCcc
Confidence 78999999999999998888 478888888 888888873 4578999999843111 32111111 011222
Q ss_pred CeeeeecCCcccHHHHHHHHHhhcc----CCcc--EEEEeCCCCceec------------hhHHHHHHHhCcCccCCCch
Q 039432 309 PWYSVRQPQLLNSAVVNLIKQEWNF----KEEP--IMVVLDSQGMVTN------------SNALDMVLIWGARGYPFSVT 370 (598)
Q Consensus 309 PWyAVp~~~~i~~~~~r~ike~~~~----~~iP--~LVvL~pqGkv~~------------~nA~~mI~~wG~~AfPFT~~ 370 (598)
-|--+ ....+.|.+.|++ .|++ -|.++|++|.+-. ..++.+| +||-||.+
T Consensus 98 ~iPll-------sD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLv-----qAfQ~td~ 165 (196)
T KOG0852|consen 98 NIPLL-------SDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLV-----QAFQFTDE 165 (196)
T ss_pred cccee-------eccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHH-----HHHhhhhc
Confidence 22111 1235667777776 4554 4888899886633 2344444 57888777
Q ss_pred hHHhh
Q 039432 371 REIEL 375 (598)
Q Consensus 371 r~e~L 375 (598)
..|-.
T Consensus 166 ~geVc 170 (196)
T KOG0852|consen 166 HGEVC 170 (196)
T ss_pred cCccc
Confidence 66643
No 136
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=67.42 E-value=11 Score=33.57 Aligned_cols=47 Identities=21% Similarity=0.263 Sum_probs=36.4
Q ss_pred cCcEEEEEcCCChhHH---HHHHHHHHHH-HhcCceeeEEEeccCCchhhHHHHh
Q 039432 400 EGRNICLYGSENKDWI---IEFNAKMMEI-RRLGLQVDMVFVGVKNPSEQVRNVL 450 (598)
Q Consensus 400 egK~I~LYgg~d~~Wi---r~FT~~l~~i-~~~~~~~E~v~Vgkd~~~e~v~~~~ 450 (598)
.||.+.|||-+ .|| ++..+.+.++ +.. .+.++.|+.++..+.+++.+
T Consensus 24 ~gk~vvv~F~a--~~C~~C~~~~~~l~~l~~~~--~~~vv~v~~~~~~~~~~~~~ 74 (127)
T cd03010 24 KGKPYLLNVWA--SWCAPCREEHPVLMALARQG--RVPIYGINYKDNPENALAWL 74 (127)
T ss_pred CCCEEEEEEEc--CcCHHHHHHHHHHHHHHHhc--CcEEEEEECCCCHHHHHHHH
Confidence 69999999877 555 7888888888 443 38999999887777777655
No 137
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=67.00 E-value=10 Score=35.07 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=19.6
Q ss_pred HHHHhhccCCccEEEEeCCCCceec
Q 039432 326 LIKQEWNFKEEPIMVVLDSQGMVTN 350 (598)
Q Consensus 326 ~ike~~~~~~iP~LVvL~pqGkv~~ 350 (598)
.|.++|+++++|+|+++. +|+.+.
T Consensus 78 ~La~~~~I~~iPTl~lfk-~G~~v~ 101 (120)
T cd03065 78 KVAKKLGLDEEDSIYVFK-DDEVIE 101 (120)
T ss_pred HHHHHcCCccccEEEEEE-CCEEEE
Confidence 356778999999999996 788664
No 138
>PLN02309 5'-adenylylsulfate reductase
Probab=66.87 E-value=15 Score=41.56 Aligned_cols=69 Identities=7% Similarity=0.071 Sum_probs=43.1
Q ss_pred cCcEEEEEEecCCCCChhh-hhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcc
Q 039432 241 KDKVVILLVSKPELLPLEK-LFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLL 319 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~~~-~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i 319 (598)
++|.|+++|.+.||++|.. -+. +.++.+++. +. .|.|.-+ |.+...
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~-~e~LA~~~~----~~--~V~f~kV-------D~d~~~------------------- 410 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEAS-YEELAEKLA----GS--GVKVAKF-------RADGDQ------------------- 410 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHH-HHHHHHHhc----cC--CeEEEEE-------ECCCcc-------------------
Confidence 5899999999999855543 344 666666552 12 3566666 222100
Q ss_pred cHHHHHHHHHhhccCCccEEEEeCCCC
Q 039432 320 NSAVVNLIKQEWNFKEEPIMVVLDSQG 346 (598)
Q Consensus 320 ~~~~~r~ike~~~~~~iP~LVvL~pqG 346 (598)
....++.|++++.|+++++.+.+
T Consensus 411 ----~~la~~~~~I~~~PTil~f~~g~ 433 (457)
T PLN02309 411 ----KEFAKQELQLGSFPTILLFPKNS 433 (457)
T ss_pred ----hHHHHhhCCCceeeEEEEEeCCC
Confidence 11223467999999999996543
No 139
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=66.11 E-value=4.2 Score=31.66 Aligned_cols=31 Identities=16% Similarity=0.445 Sum_probs=20.4
Q ss_pred CCcccccccCCCCCccceeecCCCCc-cceeee
Q 039432 564 PCSHPNVLHYAEGSREGIVVCEKCKR-LLKMFV 595 (598)
Q Consensus 564 ~C~~~~~~p~~~g~ip~~i~CpeC~R-~ME~~v 595 (598)
.|.+.+++-...+. .+.+.||+||. .+++-+
T Consensus 10 ~Cg~~fe~~~~~~~-~~~~~CP~Cg~~~~~r~~ 41 (52)
T TIGR02605 10 ACGHRFEVLQKMSD-DPLATCPECGGEKLRRLL 41 (52)
T ss_pred CCCCEeEEEEecCC-CCCCCCCCCCCCceeEEe
Confidence 46665665432233 67789999998 677654
No 140
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=64.83 E-value=17 Score=33.75 Aligned_cols=40 Identities=15% Similarity=0.074 Sum_probs=27.4
Q ss_pred cCcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEc
Q 039432 241 KDKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPI 287 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpi 287 (598)
.+|.|.|-|++.||+||..+.+.|.++=++. .++ ++|.=+
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~------~~~-~~f~kV 52 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDL------SKM-ASIYLV 52 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHc------cCc-eEEEEE
Confidence 6899999999999878876644344444443 233 677666
No 141
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=64.48 E-value=3.4 Score=30.45 Aligned_cols=13 Identities=31% Similarity=0.646 Sum_probs=9.5
Q ss_pred ceeecCCCCccce
Q 039432 580 GIVVCEKCKRLLK 592 (598)
Q Consensus 580 ~~i~CpeC~R~ME 592 (598)
..+.||+|+|++-
T Consensus 3 ~~~~C~nC~R~v~ 15 (33)
T PF08209_consen 3 PYVECPNCGRPVA 15 (33)
T ss_dssp -EEE-TTTSSEEE
T ss_pred CeEECCCCcCCcc
Confidence 4689999999874
No 142
>PF02591 DUF164: Putative zinc ribbon domain; InterPro: IPR003743 This entry describes proteins of unknown function.
Probab=62.14 E-value=4 Score=32.66 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=17.1
Q ss_pred CCcccccccCC-CCCc---cceeecCCCCccc
Q 039432 564 PCSHPNVLHYA-EGSR---EGIVVCEKCKRLL 591 (598)
Q Consensus 564 ~C~~~~~~p~~-~g~i---p~~i~CpeC~R~M 591 (598)
.-|+ +.+|.. -..+ .+.+.||+|||.+
T Consensus 26 ~gC~-~~l~~~~~~~i~~~~~i~~Cp~CgRiL 56 (56)
T PF02591_consen 26 SGCH-MELPPQELNEIRKGDEIVFCPNCGRIL 56 (56)
T ss_pred CCCC-EEcCHHHHHHHHcCCCeEECcCCCccC
Confidence 3456 677632 1111 5789999999975
No 143
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=61.88 E-value=17 Score=34.01 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=33.9
Q ss_pred cccCcEEEEEcCCCh-hHHHHHHHHHHHH-HhcCceeeEEEeccCC
Q 039432 398 VQEGRNICLYGSENK-DWIIEFNAKMMEI-RRLGLQVDMVFVGVKN 441 (598)
Q Consensus 398 i~egK~I~LYgg~d~-~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~ 441 (598)
+..||.+.|||.+.+ .+|+.+.+.+.++ +.-+..+.++.|.-|.
T Consensus 17 ~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~ 62 (142)
T cd02950 17 LSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDN 62 (142)
T ss_pred HhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCC
Confidence 458999999999953 6679999999999 6544457777776663
No 144
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=61.72 E-value=20 Score=30.84 Aligned_cols=43 Identities=9% Similarity=-0.006 Sum_probs=29.7
Q ss_pred cccCcEEEEEcCCC-hhHHHHHHHHH---HHH-HhcCceeeEEEeccC
Q 039432 398 VQEGRNICLYGSEN-KDWIIEFNAKM---MEI-RRLGLQVDMVFVGVK 440 (598)
Q Consensus 398 i~egK~I~LYgg~d-~~Wir~FT~~l---~~i-~~~~~~~E~v~Vgkd 440 (598)
+++||.+.|||+++ ..||+.+.+.+ .++ +..+..+.++.|.-+
T Consensus 8 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~ 55 (104)
T cd02953 8 LAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWT 55 (104)
T ss_pred HHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecC
Confidence 56899999999996 36678888766 455 332226777776654
No 145
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=61.70 E-value=17 Score=31.41 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=34.5
Q ss_pred cCcEEEEEcCCC-hhHHHHHHHHHHHH-HhcCceeeEEEeccCCchhhHHHHhhh
Q 039432 400 EGRNICLYGSEN-KDWIIEFNAKMMEI-RRLGLQVDMVFVGVKNPSEQVRNVLAT 452 (598)
Q Consensus 400 egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~~~e~v~~~~~~ 452 (598)
+||.+.|||-+. ...|++..+.+.++ ++....+.++.++ ++..+..++.++.
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~-~~~~~~~~~~~~~ 73 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS-DGEKAEHQRFLKK 73 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe-CCCHHHHHHHHHH
Confidence 599999998762 24458888888888 5433457777776 4455665555543
No 146
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=61.68 E-value=14 Score=35.28 Aligned_cols=48 Identities=15% Similarity=0.051 Sum_probs=34.3
Q ss_pred ccCcEEEEEcCCC-hhHHHHHHHHHHHHHhcCceeeEEEeccCCchhhHHH
Q 039432 399 QEGRNICLYGSEN-KDWIIEFNAKMMEIRRLGLQVDMVFVGVKNPSEQVRN 448 (598)
Q Consensus 399 ~egK~I~LYgg~d-~~Wir~FT~~l~~i~~~~~~~E~v~Vgkd~~~e~v~~ 448 (598)
..||.+.|||-++ ...|+++.+.+.++.+. .++++.|+.++..+..++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~ 109 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALK 109 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHH
Confidence 3789999999874 24458888888888333 488999987655555443
No 147
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=60.86 E-value=23 Score=32.95 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=38.9
Q ss_pred cCcEEEEEcCCC-hhHHHHHHHHHHHH-Hh-cCceeeEEEeccCCchhhHHHHh
Q 039432 400 EGRNICLYGSEN-KDWIIEFNAKMMEI-RR-LGLQVDMVFVGVKNPSEQVRNVL 450 (598)
Q Consensus 400 egK~I~LYgg~d-~~Wir~FT~~l~~i-~~-~~~~~E~v~Vgkd~~~e~v~~~~ 450 (598)
+||.+.|||-+. ...|++..+.+.++ ++ .+..+.++.|+.|++.|.+++.+
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~ 113 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFV 113 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHH
Confidence 789999999774 34568888888888 54 45579999999997777665555
No 148
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=60.04 E-value=43 Score=27.24 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=37.2
Q ss_pred EEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcccHHHHHH
Q 039432 247 LLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNSAVVNL 326 (598)
Q Consensus 247 LyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~~~~~r~ 326 (598)
..|++.|||.|..+...|.+.+ . ...|+++.|.. +++. ....++
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~--i-----~~~~~~~~v~~-------~~~~----------------------~~~~~~ 45 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLN--V-----KPAYEVVELDQ-------LSNG----------------------SEIQDY 45 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcC--C-----CCCCEEEEeeC-------CCCh----------------------HHHHHH
Confidence 4688999866655544365544 2 13588888875 2111 234556
Q ss_pred HHHhhccCCccEEEE
Q 039432 327 IKQEWNFKEEPIMVV 341 (598)
Q Consensus 327 ike~~~~~~iP~LVv 341 (598)
+.+..++...|.+.+
T Consensus 46 l~~~~g~~~vP~v~i 60 (84)
T TIGR02180 46 LEEITGQRTVPNIFI 60 (84)
T ss_pred HHHHhCCCCCCeEEE
Confidence 777788889999864
No 149
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=60.00 E-value=24 Score=35.15 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=50.6
Q ss_pred CcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcccH
Q 039432 242 DKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNS 321 (598)
Q Consensus 242 gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~~ 321 (598)
++.|.+.|++.||++|.-+ .+++++|..+ - .++.|+-+ +.++.
T Consensus 102 ~~~VVV~Fya~wc~~C~~m----~~~l~~LA~k-~---~~vkFvkI-------~ad~~---------------------- 144 (192)
T cd02988 102 DTWVVVHLYKDGIPLCRLL----NQHLSELARK-F---PDTKFVKI-------ISTQC---------------------- 144 (192)
T ss_pred CCEEEEEEECCCCchHHHH----HHHHHHHHHH-C---CCCEEEEE-------EhHHh----------------------
Confidence 4689999999997666543 3444444211 1 13677777 32220
Q ss_pred HHHHHHHHhhccCCccEEEEeCCCCceechh-HHHHHHHhCcCccCCCchhHHhh
Q 039432 322 AVVNLIKQEWNFKEEPIMVVLDSQGMVTNSN-ALDMVLIWGARGYPFSVTREIEL 375 (598)
Q Consensus 322 ~~~r~ike~~~~~~iP~LVvL~pqGkv~~~n-A~~mI~~wG~~AfPFT~~r~e~L 375 (598)
.+.|++++.|++++.- +|+++..= |. ...|-+ =||.+.+|.+
T Consensus 145 ------~~~~~i~~lPTlliyk-~G~~v~~ivG~---~~~gg~--~~~~~~lE~~ 187 (192)
T cd02988 145 ------IPNYPDKNLPTILVYR-NGDIVKQFIGL---LEFGGM--NTTMEDLEWL 187 (192)
T ss_pred ------HhhCCCCCCCEEEEEE-CCEEEEEEeCc---hhhCCC--CCCHHHHHHH
Confidence 1456889999999985 67666322 22 224554 5677766643
No 150
>PHA02125 thioredoxin-like protein
Probab=58.90 E-value=26 Score=28.96 Aligned_cols=15 Identities=13% Similarity=0.353 Sum_probs=12.5
Q ss_pred HHHHhhccCCccEEE
Q 039432 326 LIKQEWNFKEEPIMV 340 (598)
Q Consensus 326 ~ike~~~~~~iP~LV 340 (598)
.+.+.|++++.|+++
T Consensus 37 ~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 37 ELTAKHHIRSLPTLV 51 (75)
T ss_pred HHHHHcCCceeCeEE
Confidence 456778999999987
No 151
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=58.74 E-value=18 Score=30.12 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=34.5
Q ss_pred ccc-CcEEEEEcCCC-hhHHHHHHHHHHHH-HhcCceeeEEEeccCCchh
Q 039432 398 VQE-GRNICLYGSEN-KDWIIEFNAKMMEI-RRLGLQVDMVFVGVKNPSE 444 (598)
Q Consensus 398 i~e-gK~I~LYgg~d-~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~~~e 444 (598)
+.+ ++.+.+||+++ -.-|+.|.+.+.++ +..+.++.++.|..+..++
T Consensus 13 i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~ 62 (103)
T PF00085_consen 13 INESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKE 62 (103)
T ss_dssp HTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHH
T ss_pred HHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccch
Confidence 444 89999999994 23359999999999 6544488888888774433
No 152
>PRK10996 thioredoxin 2; Provisional
Probab=58.42 E-value=16 Score=33.91 Aligned_cols=44 Identities=11% Similarity=0.013 Sum_probs=31.9
Q ss_pred ccccCcEEEEEcCCCh-hHHHHHHHHHHHH-HhcCceeeEEEeccC
Q 039432 397 WVQEGRNICLYGSENK-DWIIEFNAKMMEI-RRLGLQVDMVFVGVK 440 (598)
Q Consensus 397 ~i~egK~I~LYgg~d~-~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd 440 (598)
.+++||.++|||.+++ .-|+.+.+.+.++ ++.+..+..+.|..+
T Consensus 48 ~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~ 93 (139)
T PRK10996 48 LLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE 93 (139)
T ss_pred HHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC
Confidence 3568999999999932 3348899999998 665555666666555
No 153
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=57.76 E-value=8.5 Score=31.32 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=23.1
Q ss_pred CCcccccccCCCCCccceeecCCCCccceee
Q 039432 564 PCSHPNVLHYAEGSREGIVVCEKCKRLLKMF 594 (598)
Q Consensus 564 ~C~~~~~~p~~~g~ip~~i~CpeC~R~ME~~ 594 (598)
.|..++++|.... -+.+.||+||-..|+.
T Consensus 7 ~CG~~iev~~~~~--GeiV~Cp~CGaeleVv 35 (54)
T TIGR01206 7 DCGAEIELENPEL--GELVICDECGAELEVV 35 (54)
T ss_pred CCCCEEecCCCcc--CCEEeCCCCCCEEEEE
Confidence 4888888885543 6789999999999874
No 154
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=57.55 E-value=92 Score=30.30 Aligned_cols=96 Identities=13% Similarity=0.140 Sum_probs=50.2
Q ss_pred CcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCC----------CCChHh-HHHHHHhhcCCC-
Q 039432 242 DKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSE----------TWTDVE-ERNFELFSCSLP- 309 (598)
Q Consensus 242 gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~----------~W~D~d-e~~Fe~~~~~MP- 309 (598)
+|+...+|++.+||-|..+...|.+ . ..++.|.+++..... -|...+ .+.+..++...+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~----~-----~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~ 147 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP----N-----ADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKV 147 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh----c-----cCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCC
Confidence 7899999999998655444332444 1 123555555441111 133222 234444443321
Q ss_pred eeeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 310 WYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 310 WyAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
.-....-. .+......+.+.+++++.|++|+ ++|+++
T Consensus 148 ~~~~~~~~-~~i~~~~~l~~~~gi~gtPtii~--~~G~~~ 184 (197)
T cd03020 148 PPPAASCD-NPVAANLALGRQLGVNGTPTIVL--ADGRVV 184 (197)
T ss_pred CCCccccC-chHHHHHHHHHHcCCCcccEEEE--CCCeEe
Confidence 10111111 12334446778999999999984 447764
No 155
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=57.42 E-value=31 Score=29.51 Aligned_cols=45 Identities=9% Similarity=0.070 Sum_probs=33.2
Q ss_pred ccCcEEEEEcCCC-hhHHHHHHHHHHHH-HhcCceeeEEEeccCCch
Q 039432 399 QEGRNICLYGSEN-KDWIIEFNAKMMEI-RRLGLQVDMVFVGVKNPS 443 (598)
Q Consensus 399 ~egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~~~ 443 (598)
+.+|.+.+||.+. ..+|+.+.+.+.++ ++.+..+.++.|..|...
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~ 57 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQ 57 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCH
Confidence 3789999998875 47789999999999 665445666666666433
No 156
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=56.61 E-value=16 Score=31.65 Aligned_cols=48 Identities=13% Similarity=0.294 Sum_probs=34.4
Q ss_pred ccCcEEEEEcCCC-hhHHHHHHHHHHHH----HhcCceeeEEEeccCCchhhH
Q 039432 399 QEGRNICLYGSEN-KDWIIEFNAKMMEI----RRLGLQVDMVFVGVKNPSEQV 446 (598)
Q Consensus 399 ~egK~I~LYgg~d-~~Wir~FT~~l~~i----~~~~~~~E~v~Vgkd~~~e~v 446 (598)
.+||++.+||++. ..+|+.+.+.+.+. ...+..+.++++.-++.++.-
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDES 55 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHH
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccc
Confidence 3789999999775 57789999988764 233447899999988665543
No 157
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=55.48 E-value=27 Score=27.76 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=30.1
Q ss_pred cccCcEEEEEcCCC-hhHHHHHHHHHHHH-HhcCceeeEEEeccCC
Q 039432 398 VQEGRNICLYGSEN-KDWIIEFNAKMMEI-RRLGLQVDMVFVGVKN 441 (598)
Q Consensus 398 i~egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~ 441 (598)
+.+++.+.||++++ -.+|+++.+.+.++ +. ...+.++.+.-++
T Consensus 7 ~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~~ 51 (93)
T cd02947 7 IKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVDE 51 (93)
T ss_pred HhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECCC
Confidence 34557777777665 57889999999999 55 4556666666553
No 158
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=55.24 E-value=21 Score=34.63 Aligned_cols=50 Identities=10% Similarity=0.037 Sum_probs=36.3
Q ss_pred cCcEEEEEcCCC-hhHHHHHHHHHHHHHhcCceeeEEEeccCCchhhHHHHhh
Q 039432 400 EGRNICLYGSEN-KDWIIEFNAKMMEIRRLGLQVDMVFVGVKNPSEQVRNVLA 451 (598)
Q Consensus 400 egK~I~LYgg~d-~~Wir~FT~~l~~i~~~~~~~E~v~Vgkd~~~e~v~~~~~ 451 (598)
.||.+.|+|-+. ...|++..+.+.++.+. .++++.|+-++..+.+++.++
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~ 117 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLK 117 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHH
Confidence 799999999874 35568888888888433 478899997665565555443
No 159
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=55.17 E-value=27 Score=28.90 Aligned_cols=54 Identities=13% Similarity=0.064 Sum_probs=37.9
Q ss_pred cCcEEEEEcCCC-hhHHHHHHHHHHHH-Hh-cCceeeEEEeccCCc-hhhHHHHhhhh
Q 039432 400 EGRNICLYGSEN-KDWIIEFNAKMMEI-RR-LGLQVDMVFVGVKNP-SEQVRNVLATI 453 (598)
Q Consensus 400 egK~I~LYgg~d-~~Wir~FT~~l~~i-~~-~~~~~E~v~Vgkd~~-~e~v~~~~~~i 453 (598)
.||++.++|... ...|+.+.+.+.++ +. .+-.+.++.|+.|.. .|.+++.++..
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~ 75 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKY 75 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHc
Confidence 488888888873 34468888888888 44 335688888888865 66665555443
No 160
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=55.00 E-value=32 Score=34.17 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=16.6
Q ss_pred eecCcEEEEEEecCCCCChhhhhH
Q 039432 239 ELKDKVVILLVSKPELLPLEKLFL 262 (598)
Q Consensus 239 ~L~gK~VlLyfSal~~~~~~~~~~ 262 (598)
.+++..+.+.|++.||+.|..+-.
T Consensus 130 ~~~~pv~I~~F~a~~C~~C~~~~~ 153 (215)
T TIGR02187 130 SLDEPVRIEVFVTPTCPYCPYAVL 153 (215)
T ss_pred hcCCCcEEEEEECCCCCCcHHHHH
Confidence 356666777799999866655444
No 161
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.34 E-value=26 Score=34.19 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=43.3
Q ss_pred CcEEEEEEecCCCCCh-hhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCccc
Q 039432 242 DKVVILLVSKPELLPL-EKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLN 320 (598)
Q Consensus 242 gK~VlLyfSal~~~~~-~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~ 320 (598)
+..|++=|.|.||.|| .-.++ |.++=.+.+ .+|.+.=+ |-|+ +++
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~-l~~~~~~~~-------g~~k~~kv-------dtD~----------------~~e--- 106 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPI-LEELVSEYA-------GKFKLYKV-------DTDE----------------HPE--- 106 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHH-HHHHHHhhc-------CeEEEEEE-------cccc----------------ccc---
Confidence 5789999999998444 44455 777766653 34555555 2122 121
Q ss_pred HHHHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 321 SAVVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 321 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
+.+.|+++-.|+++++.- |+.+
T Consensus 107 ------la~~Y~I~avPtvlvfkn-Ge~~ 128 (150)
T KOG0910|consen 107 ------LAEDYEISAVPTVLVFKN-GEKV 128 (150)
T ss_pred ------hHhhcceeeeeEEEEEEC-CEEe
Confidence 346778899999999974 4443
No 162
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.59 E-value=13 Score=36.77 Aligned_cols=88 Identities=15% Similarity=0.228 Sum_probs=54.3
Q ss_pred ecCcEEEEEEecCCCCChhhhhHHHHHHhcCc--CCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCC
Q 039432 240 LKDKVVILLVSKPELLPLEKLFLLVHQTYDHP--HNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQ 317 (598)
Q Consensus 240 L~gK~VlLyfSal~~~~~~~~~~~L~~iY~~l--~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~ 317 (598)
-+||+.+|.|+...|+-|+.+-. .+.+.- + .-..+.|-++-+-+ ++...-.|.. ++
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KK---d~~~~krlr-Eylk~hf~~~~l~i------~~skpv~f~~------------g~ 97 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKK---DLKNVKRLR-EYLKEHFSAYYLNI------SYSKPVLFKV------------GD 97 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHH---hhcchHHHH-HHHhhCeEEEEEEe------ccCcceEeec------------Cc
Confidence 56899999999999755554433 222221 1 01245688888777 1111111111 11
Q ss_pred cccHHHHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 318 LLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 318 ~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
+-...-.+-|.+.|.+++-|++|..|-.|+.+
T Consensus 98 kee~~s~~ELa~kf~vrstPtfvFfdk~Gk~I 129 (182)
T COG2143 98 KEEKMSTEELAQKFAVRSTPTFVFFDKTGKTI 129 (182)
T ss_pred eeeeecHHHHHHHhccccCceEEEEcCCCCEE
Confidence 11122356788899999999999999999986
No 163
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=53.53 E-value=23 Score=34.63 Aligned_cols=42 Identities=17% Similarity=0.135 Sum_probs=29.9
Q ss_pred cccCcEEEEEcCCC-hhHHHHHHHHHHHH-HhcCceeeEEEeccCC
Q 039432 398 VQEGRNICLYGSEN-KDWIIEFNAKMMEI-RRLGLQVDMVFVGVKN 441 (598)
Q Consensus 398 i~egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~ 441 (598)
...||.+.|||.+. ...|++..+.+.++ ++. .++++.|+.++
T Consensus 71 ~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~--~~~vv~Is~~~ 114 (189)
T TIGR02661 71 IAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE--ETDVVMISDGT 114 (189)
T ss_pred hcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc--CCcEEEEeCCC
Confidence 34789999999773 34458888888888 544 35678888654
No 164
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=53.31 E-value=18 Score=33.77 Aligned_cols=81 Identities=15% Similarity=0.311 Sum_probs=42.5
Q ss_pred cCcEEEEEEecC-------CCC-ChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEc-CCCCCCChHhHHHHHHhhcCCCee
Q 039432 241 KDKVVILLVSKP-------ELL-PLEKLFLLVHQTYDHPHNKNLEESYKIVWVPI-SSSETWTDVEERNFELFSCSLPWY 311 (598)
Q Consensus 241 ~gK~VlLyfSal-------~~~-~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpi-d~~~~W~D~de~~Fe~~~~~MPWy 311 (598)
.|+.+.|||.+. ||| |...-+. +.+.+.++ .++.-+|.+.+ ++ ..|.|.+ ..|..
T Consensus 18 ~~~~~fl~F~gs~d~~g~sWCPDC~~aep~-v~~~f~~~-----~~~~~lv~v~VG~r-~~Wkdp~-n~fR~-------- 81 (119)
T PF06110_consen 18 SGKPLFLLFTGSKDETGQSWCPDCVAAEPV-VEKAFKKA-----PENARLVYVEVGDR-PEWKDPN-NPFRT-------- 81 (119)
T ss_dssp TTSEEEEEEE--B-TTS-BSSHHHHHHHHH-HHHHHHH------STTEEEEEEE---H-HHHC-TT-SHHHH--------
T ss_pred CCCeEEEEEEccCCCCCCcccHHHHHHHHH-HHHHHHhC-----CCCceEEEEEcCCH-HHhCCCC-CCceE--------
Confidence 456777777653 764 3344555 77777774 23566777777 33 3454421 12211
Q ss_pred eeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceechhH
Q 039432 312 SVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNSNA 353 (598)
Q Consensus 312 AVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA 353 (598)
...|+++++|+|+-.+..+|.+-.+.
T Consensus 82 ----------------~p~~~l~~IPTLi~~~~~~rL~e~e~ 107 (119)
T PF06110_consen 82 ----------------DPDLKLKGIPTLIRWETGERLVEEEC 107 (119)
T ss_dssp ------------------CC---SSSEEEECTSS-EEEHHHH
T ss_pred ----------------cceeeeeecceEEEECCCCccchhhh
Confidence 12479999999999987787665443
No 165
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.55 E-value=20 Score=38.48 Aligned_cols=90 Identities=13% Similarity=0.112 Sum_probs=60.5
Q ss_pred eeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeee
Q 039432 234 QLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYS 312 (598)
Q Consensus 234 kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyA 312 (598)
+.=+..-+.+.|+++|=+.|| +|.+.++. |.++=.+- ++.|+.+=|=+ |++
T Consensus 35 ~~V~~~S~~~PVlV~fWap~~~~c~qL~p~-Lekla~~~-----~G~f~LakvN~-------D~~--------------- 86 (304)
T COG3118 35 QEVIQSSREVPVLVDFWAPWCGPCKQLTPT-LEKLAAEY-----KGKFKLAKVNC-------DAE--------------- 86 (304)
T ss_pred HHHHHHccCCCeEEEecCCCCchHHHHHHH-HHHHHHHh-----CCceEEEEecC-------Ccc---------------
Confidence 455566677899999999998 45555666 77766663 46688888776 322
Q ss_pred eecCCcccHHHHHHHHHhhccCCccEEEEeC---C----CCceechhHHHHHHHhCcC
Q 039432 313 VRQPQLLNSAVVNLIKQEWNFKEEPIMVVLD---S----QGMVTNSNALDMVLIWGAR 363 (598)
Q Consensus 313 Vp~~~~i~~~~~r~ike~~~~~~iP~LVvL~---p----qGkv~~~nA~~mI~~wG~~ 363 (598)
| -|.-.|+++.||+++++- | +|-.=.+--+.++...+..
T Consensus 87 ---p---------~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 87 ---P---------MVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred ---h---------hHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 1 134567999999999883 1 3333334455777777766
No 166
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=49.94 E-value=32 Score=28.88 Aligned_cols=42 Identities=7% Similarity=-0.133 Sum_probs=30.2
Q ss_pred cCcEEEEEcCCC-hhHHHHHHHHHHHH-HhcCceeeEEEeccCC
Q 039432 400 EGRNICLYGSEN-KDWIIEFNAKMMEI-RRLGLQVDMVFVGVKN 441 (598)
Q Consensus 400 egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~ 441 (598)
.|+.+.+||.++ -..|+.+.+.+.++ +.-+..+-++.|.-+.
T Consensus 11 ~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~ 54 (96)
T cd02956 11 TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA 54 (96)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC
Confidence 488999999993 23369999999998 5544456666666554
No 167
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=48.66 E-value=41 Score=32.24 Aligned_cols=70 Identities=7% Similarity=0.103 Sum_probs=0.0
Q ss_pred cCcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCccc
Q 039432 241 KDKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLN 320 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~ 320 (598)
.+|.|.+-|++.||+||..+.+.|.++=+++ +++ +.++=+ |-|+
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~------~~~-~~~~kV-------DVDe---------------------- 65 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETI------KNF-AVIYLV-------DITE---------------------- 65 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHc------CCc-eEEEEE-------ECCC----------------------
Q ss_pred HHHHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 321 SAVVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 321 ~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
..-+.+.|++++.|+++.+=.+|+..
T Consensus 66 ---~~dla~~y~I~~~~t~~~ffk~g~~~ 91 (142)
T PLN00410 66 ---VPDFNTMYELYDPCTVMFFFRNKHIM 91 (142)
T ss_pred ---CHHHHHHcCccCCCcEEEEEECCeEE
No 168
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=48.65 E-value=34 Score=29.26 Aligned_cols=45 Identities=9% Similarity=0.023 Sum_probs=33.5
Q ss_pred cccCcEEEEEcCCC-hhHHHHHHHHHHHH-HhcCceeeEEEeccCCc
Q 039432 398 VQEGRNICLYGSEN-KDWIIEFNAKMMEI-RRLGLQVDMVFVGVKNP 442 (598)
Q Consensus 398 i~egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~~ 442 (598)
+++++.+.++|.+. ...|+++.+.+.++ +..+..+.+..|.-++.
T Consensus 15 v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~ 61 (101)
T cd03003 15 VNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDD 61 (101)
T ss_pred hcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCcc
Confidence 56789999999884 24569999999999 66444577777777743
No 169
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=48.48 E-value=41 Score=27.34 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=33.1
Q ss_pred cccCcEEEEEcCCC-hhHHHHHHHHHHHH-Hhc--CceeeEEEeccC
Q 039432 398 VQEGRNICLYGSEN-KDWIIEFNAKMMEI-RRL--GLQVDMVFVGVK 440 (598)
Q Consensus 398 i~egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~--~~~~E~v~Vgkd 440 (598)
+.+++.+.++|.++ ..+|+.|.+.+.++ +.. +..+.++.|..+
T Consensus 12 i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 58 (101)
T cd02961 12 VKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT 58 (101)
T ss_pred HhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc
Confidence 55777888888776 57889999999888 554 577888888766
No 170
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=48.35 E-value=34 Score=29.73 Aligned_cols=43 Identities=7% Similarity=-0.062 Sum_probs=31.2
Q ss_pred cccCcEEEEEcCCCh-hHHHHHHHHHHHH-HhcC-ceeeEEEeccC
Q 039432 398 VQEGRNICLYGSENK-DWIIEFNAKMMEI-RRLG-LQVDMVFVGVK 440 (598)
Q Consensus 398 i~egK~I~LYgg~d~-~Wir~FT~~l~~i-~~~~-~~~E~v~Vgkd 440 (598)
++.|+.+.|||.+.+ .-|+.+.+.+.++ ++.+ ..+..+.|.-|
T Consensus 14 i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d 59 (102)
T cd02948 14 LSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD 59 (102)
T ss_pred HccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC
Confidence 457999999999932 3359999999998 6533 34666667666
No 171
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=47.59 E-value=38 Score=30.30 Aligned_cols=40 Identities=8% Similarity=-0.085 Sum_probs=30.0
Q ss_pred cCcEEEEEcCCC-hhHHHHHHHHHHHH-Hh-cCceeeEEEecc
Q 039432 400 EGRNICLYGSEN-KDWIIEFNAKMMEI-RR-LGLQVDMVFVGV 439 (598)
Q Consensus 400 egK~I~LYgg~d-~~Wir~FT~~l~~i-~~-~~~~~E~v~Vgk 439 (598)
.||.+.|||-+. ...|+.-.+.+.++ ++ ++..++++.|+.
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 789999999662 23357788888888 54 456799999865
No 172
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=47.28 E-value=8.6 Score=29.94 Aligned_cols=14 Identities=21% Similarity=0.710 Sum_probs=12.0
Q ss_pred ceeecCCCCcccee
Q 039432 580 GIVVCEKCKRLLKM 593 (598)
Q Consensus 580 ~~i~CpeC~R~ME~ 593 (598)
..+.|++||+.|=.
T Consensus 4 g~l~C~~CG~~m~~ 17 (58)
T PF13408_consen 4 GLLRCGHCGSKMTR 17 (58)
T ss_pred CcEEcccCCcEeEE
Confidence 57899999999954
No 173
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=45.85 E-value=24 Score=29.50 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=32.9
Q ss_pred cccCcEEEEEcCCC-hhHHHHHHHHH---HHH-HhcCceeeEEEeccCCchh
Q 039432 398 VQEGRNICLYGSEN-KDWIIEFNAKM---MEI-RRLGLQVDMVFVGVKNPSE 444 (598)
Q Consensus 398 i~egK~I~LYgg~d-~~Wir~FT~~l---~~i-~~~~~~~E~v~Vgkd~~~e 444 (598)
-++||.|++|+|++ -.||+.|...+ .++ +..+.+|-.+.|-.++...
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~ 65 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDP 65 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHH
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCCh
Confidence 35899999999997 47788887766 445 3345677777776664443
No 174
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=44.00 E-value=10 Score=25.98 Aligned_cols=13 Identities=31% Similarity=0.726 Sum_probs=10.3
Q ss_pred ceeecCCCCccce
Q 039432 580 GIVVCEKCKRLLK 592 (598)
Q Consensus 580 ~~i~CpeC~R~ME 592 (598)
+.+.||.|||.+.
T Consensus 1 ~l~~C~~CgR~F~ 13 (25)
T PF13913_consen 1 ELVPCPICGRKFN 13 (25)
T ss_pred CCCcCCCCCCEEC
Confidence 3578999999763
No 175
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=43.74 E-value=25 Score=36.80 Aligned_cols=89 Identities=6% Similarity=0.090 Sum_probs=58.7
Q ss_pred eeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHh-HHHHHHhhcCCCee
Q 039432 234 QLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVE-ERNFELFSCSLPWY 311 (598)
Q Consensus 234 kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~d-e~~Fe~~~~~MPWy 311 (598)
+--|..|.+++=++||-..+| .|+.+.++ |...=++- .++|+-||+|. . -..|
T Consensus 142 ~~~i~~la~~~gL~fFy~~~C~~C~~~api-l~~fa~~y-------gi~v~~VS~DG-------~~~p~f---------- 196 (256)
T TIGR02739 142 EKAIQQLSQSYGLFFFYRGKSPISQKMAPV-IQAFAKEY-------GISVIPISVDG-------TLIPGL---------- 196 (256)
T ss_pred HHHHHHHHhceeEEEEECCCCchhHHHHHH-HHHHHHHh-------CCeEEEEecCC-------CCCCCC----------
Confidence 456788989998899999887 46677777 65554442 49999999932 1 1112
Q ss_pred eeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceechhHH
Q 039432 312 SVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTNSNAL 354 (598)
Q Consensus 312 AVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~ 354 (598)
|.+- .| .-+.+.+++..-|.|++++|+++...+=|.
T Consensus 197 --p~~~-~d----~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~~ 232 (256)
T TIGR02739 197 --PNSR-SD----SGQAQHLGVKYFPALYLVNPKSQKMSPLAY 232 (256)
T ss_pred --CCcc-CC----hHHHHhcCCccCceEEEEECCCCcEEEEee
Confidence 1110 01 234567799999999999998665544333
No 176
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=43.39 E-value=43 Score=33.07 Aligned_cols=53 Identities=13% Similarity=0.267 Sum_probs=41.0
Q ss_pred cCCceeecceecCcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEc
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPI 287 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpi 287 (598)
-+|..++++.++||.|++.=-|.-|--....-- |+.+|++.+ +..|||+=.|.
T Consensus 13 ~~G~~~~l~~~~GkVlLIVNtASkCGfTpQYeg-Le~Ly~ky~----~~Gf~VLgFPc 65 (162)
T COG0386 13 IDGEPVSLSDYKGKVLLIVNTASKCGFTPQYEG-LEALYKKYK----DKGFEVLGFPC 65 (162)
T ss_pred cCCCCccHHHhCCcEEEEEEcccccCCcHhHHH-HHHHHHHHh----hCCcEEEeccc
Confidence 467789999999999888888877522234444 888999873 46799999998
No 177
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=42.57 E-value=36 Score=28.16 Aligned_cols=43 Identities=9% Similarity=-0.016 Sum_probs=31.3
Q ss_pred cCcEEEEEcCCC-hhHHHHHHHHHHHH-HhcCceeeEEEeccCCc
Q 039432 400 EGRNICLYGSEN-KDWIIEFNAKMMEI-RRLGLQVDMVFVGVKNP 442 (598)
Q Consensus 400 egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~~ 442 (598)
.+|.+.|||.+. ...|+.+.+.+.++ +..+..+.++.|..++.
T Consensus 13 ~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~ 57 (101)
T TIGR01068 13 SDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDEN 57 (101)
T ss_pred cCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCC
Confidence 467888888883 34459999999988 66555677777776643
No 178
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=39.72 E-value=56 Score=30.20 Aligned_cols=45 Identities=7% Similarity=0.132 Sum_probs=33.2
Q ss_pred cCcEEEEEcCCCh-hHHHHHHHHHHHH-HhcCceeeEEEeccCCchh
Q 039432 400 EGRNICLYGSENK-DWIIEFNAKMMEI-RRLGLQVDMVFVGVKNPSE 444 (598)
Q Consensus 400 egK~I~LYgg~d~-~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~~~e 444 (598)
.++.+.++|++++ ..||...+.+.++ .+-...+..+.|--|+-.+
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~ 59 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPD 59 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHH
Confidence 5788999999932 3359999999999 6544446788888875443
No 179
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=38.73 E-value=39 Score=30.66 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=23.3
Q ss_pred cccCcEEEEEcCCC-hhHHHHHHHHHHHH
Q 039432 398 VQEGRNICLYGSEN-KDWIIEFNAKMMEI 425 (598)
Q Consensus 398 i~egK~I~LYgg~d-~~Wir~FT~~l~~i 425 (598)
..+||-|+++|+++ ..||+.+.+.+.+.
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~ 44 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAES 44 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhh
Confidence 34899999999997 48889999988776
No 180
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.15 E-value=14 Score=31.27 Aligned_cols=15 Identities=20% Similarity=0.399 Sum_probs=12.7
Q ss_pred cceeecCCCCcccee
Q 039432 579 EGIVVCEKCKRLLKM 593 (598)
Q Consensus 579 p~~i~CpeC~R~ME~ 593 (598)
.-+++||.||++.+-
T Consensus 5 ~~~v~CP~Cgkpv~w 19 (65)
T COG3024 5 RITVPCPTCGKPVVW 19 (65)
T ss_pred cccccCCCCCCcccc
Confidence 468999999999875
No 181
>PHA02278 thioredoxin-like protein
Probab=37.66 E-value=44 Score=29.88 Aligned_cols=43 Identities=0% Similarity=0.089 Sum_probs=30.3
Q ss_pred cccCcEEEEEcCCCh-hHHHHHHHHHHHH-HhcCceeeEEEeccC
Q 039432 398 VQEGRNICLYGSENK-DWIIEFNAKMMEI-RRLGLQVDMVFVGVK 440 (598)
Q Consensus 398 i~egK~I~LYgg~d~-~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd 440 (598)
+.+++.+.+||.+++ ..||.+.+.+.++ ++.+....++.|--|
T Consensus 11 i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd 55 (103)
T PHA02278 11 IRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLD 55 (103)
T ss_pred HhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECC
Confidence 458999999999942 4459999999999 542333445555555
No 182
>KOG1088 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.31 E-value=16 Score=34.30 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=10.8
Q ss_pred ccceeecCCCCccc
Q 039432 578 REGIVVCEKCKRLL 591 (598)
Q Consensus 578 ip~~i~CpeC~R~M 591 (598)
+.+..+||||||.-
T Consensus 95 ~EG~l~CpetG~vf 108 (124)
T KOG1088|consen 95 IEGELVCPETGRVF 108 (124)
T ss_pred ccceEecCCCCcEe
Confidence 45678899999863
No 183
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=36.84 E-value=76 Score=24.73 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=25.2
Q ss_pred EEEEcCCChhHHHHHHHHHHHH-HhcCceeeEEEeccC
Q 039432 404 ICLYGSENKDWIIEFNAKMMEI-RRLGLQVDMVFVGVK 440 (598)
Q Consensus 404 I~LYgg~d~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd 440 (598)
|-+|+...-.+| .+++++ ++.|+++|.+-|+++
T Consensus 1 V~vy~~~~C~~C----~~~~~~L~~~~i~y~~~dv~~~ 34 (60)
T PF00462_consen 1 VVVYTKPGCPYC----KKAKEFLDEKGIPYEEVDVDED 34 (60)
T ss_dssp EEEEESTTSHHH----HHHHHHHHHTTBEEEEEEGGGS
T ss_pred cEEEEcCCCcCH----HHHHHHHHHcCCeeeEcccccc
Confidence 457776655555 556666 888999999999998
No 184
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=36.61 E-value=80 Score=26.51 Aligned_cols=42 Identities=7% Similarity=-0.144 Sum_probs=29.5
Q ss_pred cCcEEEEEcCCC-hhHHHHHHHHHHHH-HhcCceeeEEEeccCC
Q 039432 400 EGRNICLYGSEN-KDWIIEFNAKMMEI-RRLGLQVDMVFVGVKN 441 (598)
Q Consensus 400 egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~ 441 (598)
.++.+.+||+++ -..|++|.+.+.++ +.....+.++.+..+.
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~ 60 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADV 60 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcc
Confidence 466688888874 35669999999998 6544456666666553
No 185
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=36.28 E-value=23 Score=26.23 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=15.9
Q ss_pred CCcccccccCCCCCccceeecCCCCcc
Q 039432 564 PCSHPNVLHYAEGSREGIVVCEKCKRL 590 (598)
Q Consensus 564 ~C~~~~~~p~~~g~ip~~i~CpeC~R~ 590 (598)
.|..+++.---+|+=.++.+||.||.+
T Consensus 5 ~CG~~l~~~ip~gd~r~R~vC~~Cg~I 31 (34)
T PF14803_consen 5 QCGGPLERRIPEGDDRERLVCPACGFI 31 (34)
T ss_dssp TT--B-EEE--TT-SS-EEEETTTTEE
T ss_pred cccChhhhhcCCCCCccceECCCCCCE
Confidence 466666666668888899999999964
No 186
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=35.98 E-value=25 Score=27.01 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=16.6
Q ss_pred CCcccccccCCCCCccceeecCCCCccce
Q 039432 564 PCSHPNVLHYAEGSREGIVVCEKCKRLLK 592 (598)
Q Consensus 564 ~C~~~~~~p~~~g~ip~~i~CpeC~R~ME 592 (598)
.|...++++...+ .+.||.||.++.
T Consensus 8 ~CG~~~~~~~~~~----~~~Cp~CG~~~~ 32 (46)
T PRK00398 8 RCGREVELDEYGT----GVRCPYCGYRIL 32 (46)
T ss_pred CCCCEEEECCCCC----ceECCCCCCeEE
Confidence 3655455553333 689999998775
No 187
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.77 E-value=52 Score=31.28 Aligned_cols=43 Identities=19% Similarity=0.358 Sum_probs=28.0
Q ss_pred cccCcEEEEEcCCC------hhHHHHHH---HHHHHH-Hh--cCceeeEEEeccC
Q 039432 398 VQEGRNICLYGSEN------KDWIIEFN---AKMMEI-RR--LGLQVDMVFVGVK 440 (598)
Q Consensus 398 i~egK~I~LYgg~d------~~Wir~FT---~~l~~i-~~--~~~~~E~v~Vgkd 440 (598)
+..||+|++||-.+ --||=+-- +.+.+. ++ ++..|=.||||..
T Consensus 22 ~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 22 VENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNR 76 (128)
T ss_pred HhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCC
Confidence 45778788887332 27984443 333444 43 5778889999986
No 188
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=35.23 E-value=47 Score=29.57 Aligned_cols=45 Identities=9% Similarity=0.224 Sum_probs=32.0
Q ss_pred ccccC-cEEEEEcCCC-hhHHHHHHHHHH---HH-HhcCceeeEEEeccCC
Q 039432 397 WVQEG-RNICLYGSEN-KDWIIEFNAKMM---EI-RRLGLQVDMVFVGVKN 441 (598)
Q Consensus 397 ~i~eg-K~I~LYgg~d-~~Wir~FT~~l~---~i-~~~~~~~E~v~Vgkd~ 441 (598)
..++| |.|.++|+++ ..||+.+.+.+. ++ +..+..+.++.|.-+.
T Consensus 9 a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~ 59 (125)
T cd02951 9 AAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDG 59 (125)
T ss_pred HHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccC
Confidence 35689 9999999986 477899888763 44 3333467788887663
No 189
>PTZ00051 thioredoxin; Provisional
Probab=34.98 E-value=60 Score=27.25 Aligned_cols=30 Identities=3% Similarity=-0.143 Sum_probs=23.2
Q ss_pred cccCcEEEEEcCCC-hhHHHHHHHHHHHH-Hh
Q 039432 398 VQEGRNICLYGSEN-KDWIIEFNAKMMEI-RR 427 (598)
Q Consensus 398 i~egK~I~LYgg~d-~~Wir~FT~~l~~i-~~ 427 (598)
+.+++.+.|||+++ ...||+|.+.+.++ +.
T Consensus 15 ~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~ 46 (98)
T PTZ00051 15 LSQNELVIVDFYAEWCGPCKRIAPFYEECSKE 46 (98)
T ss_pred HhcCCeEEEEEECCCCHHHHHHhHHHHHHHHH
Confidence 45789999999984 24459999999988 54
No 190
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=34.57 E-value=66 Score=28.81 Aligned_cols=43 Identities=21% Similarity=0.283 Sum_probs=29.6
Q ss_pred cCcEEEEEcCCC-hhH-HHHHHHHHHHH-HhcC----ceeeEEEeccCCc
Q 039432 400 EGRNICLYGSEN-KDW-IIEFNAKMMEI-RRLG----LQVDMVFVGVKNP 442 (598)
Q Consensus 400 egK~I~LYgg~d-~~W-ir~FT~~l~~i-~~~~----~~~E~v~Vgkd~~ 442 (598)
.||++.|+|... ... |+.-.+.++++ ++.+ ..++++.|+.|..
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~ 70 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPE 70 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCC
Confidence 789888988662 333 56666777776 4322 3699999998753
No 191
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=34.35 E-value=34 Score=35.69 Aligned_cols=123 Identities=9% Similarity=0.100 Sum_probs=72.0
Q ss_pred ccccccchhHHHhhhhhhhhhhhHHHhhhcccccccccccCCceeecceecCcEEEEEEecCCCC-ChhhhhHHHHHHhc
Q 039432 191 HLMMDKEMISTTKSHIFIAAYWVIRSSLNCSSHINDLIAMKSEQLGVSELKDKVVILLVSKPELL-PLEKLFLLVHQTYD 269 (598)
Q Consensus 191 y~~~dvp~l~~a~~~Ip~~vYW~I~Siva~~s~id~L~~~~~~kV~Is~L~gK~VlLyfSal~~~-~~~~~~~~L~~iY~ 269 (598)
......|.|..++.+ |+..+ +...-.+ . ...+.+--|..|.+++=++||-..+|+ |+.+.++ |...=+
T Consensus 102 ~v~l~~PeLdy~l~~-P~~~~-a~~~~~~-~-------~~~~~~~~i~~la~~~GL~fFy~s~Cp~C~~~aPi-l~~fa~ 170 (248)
T PRK13703 102 KAMLAHPELDYNLQY-SHYNG-TVRNQLA-A-------DQAQQRQAIAKLAEHYGLMFFYRGQDPIDGQLAQV-INDFRD 170 (248)
T ss_pred HHHhhCCCCCccccC-CchHH-HHHHHHH-H-------HHHHHHHHHHHHHhcceEEEEECCCCchhHHHHHH-HHHHHH
Confidence 344566777777755 76555 1111111 0 111123457788889999999999874 5666666 666555
Q ss_pred CcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcccHHHHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 270 HPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 270 ~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
+- .++|+-||+|. .- .| .+|.+- .|.. ..+.++++.-|.|++++|+++..
T Consensus 171 ~y-------g~~v~~VS~DG-------~~---------~p--~fp~~~-~d~g----qa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 171 TY-------GLSVIPVSVDG-------VI---------NP--LLPDSR-TDQG----QAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred Hh-------CCeEEEEecCC-------CC---------CC--CCCCCc-cChh----HHHhcCCcccceEEEEECCCCcE
Confidence 43 49999999932 10 11 112211 1122 22678999999999999987554
Q ss_pred chhHH
Q 039432 350 NSNAL 354 (598)
Q Consensus 350 ~~nA~ 354 (598)
-+=|.
T Consensus 221 ~pv~~ 225 (248)
T PRK13703 221 RPLSY 225 (248)
T ss_pred EEEee
Confidence 44333
No 192
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=33.82 E-value=54 Score=28.70 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=30.8
Q ss_pred ccCcEEEEEcCCC-hhHHHHHHHHHHHH-HhcCceeeEEEeccCC-chhhHHHHh
Q 039432 399 QEGRNICLYGSEN-KDWIIEFNAKMMEI-RRLGLQVDMVFVGVKN-PSEQVRNVL 450 (598)
Q Consensus 399 ~egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~-~~e~v~~~~ 450 (598)
..||.+.|||.+. ...|+.+.+.+.++ ++ ++++.|+-++ ..+.++...
T Consensus 18 ~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~----~~~i~i~~~~~~~~~~~~~~ 68 (123)
T cd03011 18 LSGKPVLVYFWATWCPVCRFTSPTVNQLAAD----YPVVSVALRSGDDGAVARFM 68 (123)
T ss_pred hCCCEEEEEEECCcChhhhhhChHHHHHHhh----CCEEEEEccCCCHHHHHHHH
Confidence 4789899998873 34458888888888 44 5566666553 244444433
No 193
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=33.69 E-value=62 Score=31.91 Aligned_cols=74 Identities=15% Similarity=0.211 Sum_probs=36.2
Q ss_pred cCcEEEEEEecCCCC-Ch---hhhhH--HHHHHhcCcCCCCCCCCeEEEEEEc--CCCCCCChHhHHHHHHhhcCCCeee
Q 039432 241 KDKVVILLVSKPELL-PL---EKLFL--LVHQTYDHPHNKNLEESYKIVWVPI--SSSETWTDVEERNFELFSCSLPWYS 312 (598)
Q Consensus 241 ~gK~VlLyfSal~~~-~~---~~~~~--~L~~iY~~l~~~~~~~~fEIVwIpi--d~~~~W~D~de~~Fe~~~~~MPWyA 312 (598)
++|-|+|.|...||. |. +++.. .+.++.|+ =|||+ |+ |+.
T Consensus 36 e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~------------~FI~VkvDr-----ee~--------------- 83 (163)
T PF03190_consen 36 ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR------------NFIPVKVDR-----EER--------------- 83 (163)
T ss_dssp HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH------------H-EEEEEET-----TT----------------
T ss_pred cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC------------CEEEEEecc-----ccC---------------
Confidence 579999999999963 33 22211 23444444 38888 43 211
Q ss_pred eecCCcccHHHHHHHHHhhccCCccEEEEeCCCCceec
Q 039432 313 VRQPQLLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVTN 350 (598)
Q Consensus 313 Vp~~~~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~~ 350 (598)
|+ ||.....+..-..+..|=|+-|+|+|+|+.+.
T Consensus 84 ---Pd-id~~y~~~~~~~~~~gGwPl~vfltPdg~p~~ 117 (163)
T PF03190_consen 84 ---PD-IDKIYMNAVQAMSGSGGWPLTVFLTPDGKPFF 117 (163)
T ss_dssp ---HH-HHHHHHHHHHHHHS---SSEEEEE-TTS-EEE
T ss_pred ---cc-HHHHHHHHHHHhcCCCCCCceEEECCCCCeee
Confidence 11 12233333334447789999999999999874
No 194
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=33.19 E-value=67 Score=28.41 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=30.4
Q ss_pred cCcEEEEEcCCChhHH---HHHHHHHHHH-Hh-cCceeeEEEeccCC
Q 039432 400 EGRNICLYGSENKDWI---IEFNAKMMEI-RR-LGLQVDMVFVGVKN 441 (598)
Q Consensus 400 egK~I~LYgg~d~~Wi---r~FT~~l~~i-~~-~~~~~E~v~Vgkd~ 441 (598)
.||.+.++|-+ .|| +.+.+.+.++ ++ .+..+.++.|.-++
T Consensus 23 ~~~~vlV~F~a--~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~ 67 (111)
T cd02963 23 FKKPYLIKITS--DWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH 67 (111)
T ss_pred CCCeEEEEEEC--CccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc
Confidence 78999999999 565 8888988888 54 34457777776663
No 195
>PF13453 zf-TFIIB: Transcription factor zinc-finger
Probab=32.77 E-value=21 Score=26.87 Aligned_cols=12 Identities=25% Similarity=0.620 Sum_probs=10.6
Q ss_pred ecCCCCccceee
Q 039432 583 VCEKCKRLLKMF 594 (598)
Q Consensus 583 ~CpeC~R~ME~~ 594 (598)
.||.|+..|+..
T Consensus 1 ~CP~C~~~l~~~ 12 (41)
T PF13453_consen 1 KCPRCGTELEPV 12 (41)
T ss_pred CcCCCCcccceE
Confidence 599999999976
No 196
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=32.59 E-value=21 Score=33.32 Aligned_cols=10 Identities=30% Similarity=0.763 Sum_probs=6.1
Q ss_pred eeecCCCCcc
Q 039432 581 IVVCEKCKRL 590 (598)
Q Consensus 581 ~i~CpeC~R~ 590 (598)
.|.||+|+|+
T Consensus 69 ~V~CP~C~K~ 78 (114)
T PF11023_consen 69 QVECPNCGKQ 78 (114)
T ss_pred eeECCCCCCh
Confidence 4556666665
No 197
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=32.52 E-value=91 Score=27.90 Aligned_cols=45 Identities=4% Similarity=0.124 Sum_probs=30.8
Q ss_pred cccCcEEEEEcCCCh-hHHHHHHHHHHHH-HhcCceeeEEEeccCCch
Q 039432 398 VQEGRNICLYGSENK-DWIIEFNAKMMEI-RRLGLQVDMVFVGVKNPS 443 (598)
Q Consensus 398 i~egK~I~LYgg~d~-~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~~~ 443 (598)
+..++.+.+|+++++ ..|+.+-+.+.++ ... ..++++.|..|..+
T Consensus 19 l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~~~ 65 (113)
T cd02975 19 MKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDEDK 65 (113)
T ss_pred hCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCcCH
Confidence 456788999999843 4568888889888 443 34666666666433
No 198
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=31.78 E-value=59 Score=27.04 Aligned_cols=41 Identities=10% Similarity=0.206 Sum_probs=27.7
Q ss_pred cccCcEEEEEcCCChhHH---HHHHHHHHHH-Hh-cCc-eeeEEEeccC
Q 039432 398 VQEGRNICLYGSENKDWI---IEFNAKMMEI-RR-LGL-QVDMVFVGVK 440 (598)
Q Consensus 398 i~egK~I~LYgg~d~~Wi---r~FT~~l~~i-~~-~~~-~~E~v~Vgkd 440 (598)
+++|+.++|+|.+ .|| |+|.+.+.++ +. .+. .+-++.+.-+
T Consensus 10 ~~~~~~~~i~f~~--~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 56 (102)
T TIGR01126 10 VLSNKDVLVEFYA--PWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT 56 (102)
T ss_pred hccCCcEEEEEEC--CCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc
Confidence 4589999999988 565 8888888888 54 222 3444444444
No 199
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=31.73 E-value=82 Score=26.88 Aligned_cols=41 Identities=10% Similarity=-0.108 Sum_probs=29.3
Q ss_pred cCcEEEEEcCCC-hhHHHHHHHHHHHH-HhcCceeeEEEeccC
Q 039432 400 EGRNICLYGSEN-KDWIIEFNAKMMEI-RRLGLQVDMVFVGVK 440 (598)
Q Consensus 400 egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd 440 (598)
.++.+.++|.++ ..-|+.+.+.+.++ ++-+..+.+..|.-+
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~ 60 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ 60 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC
Confidence 577999999884 24459999999999 653434666666655
No 200
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=31.73 E-value=19 Score=24.68 Aligned_cols=11 Identities=18% Similarity=0.721 Sum_probs=5.6
Q ss_pred eecCCCCccce
Q 039432 582 VVCEKCKRLLK 592 (598)
Q Consensus 582 i~CpeC~R~ME 592 (598)
+.||+||...+
T Consensus 3 ~~Cp~Cg~~~~ 13 (26)
T PF13248_consen 3 MFCPNCGAEID 13 (26)
T ss_pred CCCcccCCcCC
Confidence 45555555433
No 201
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=31.13 E-value=68 Score=27.39 Aligned_cols=42 Identities=7% Similarity=-0.031 Sum_probs=30.6
Q ss_pred cCcEEEEEcCCC-hhHHHHHHHHHHHH-HhcCceeeEEEeccCC
Q 039432 400 EGRNICLYGSEN-KDWIIEFNAKMMEI-RRLGLQVDMVFVGVKN 441 (598)
Q Consensus 400 egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~ 441 (598)
.|+.+.++|.++ -..|+++.+.+.++ +..+..+.++.|.-++
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~ 60 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE 60 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc
Confidence 578899999884 24459999999998 6544456777776663
No 202
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=31.02 E-value=22 Score=25.95 Aligned_cols=30 Identities=23% Similarity=0.416 Sum_probs=18.2
Q ss_pred CCcccccccCC-CCCccceeecCCCCcccee
Q 039432 564 PCSHPNVLHYA-EGSREGIVVCEKCKRLLKM 593 (598)
Q Consensus 564 ~C~~~~~~p~~-~g~ip~~i~CpeC~R~ME~ 593 (598)
+|...+.+|.. -+.-...+.||.||.+.+.
T Consensus 7 ~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~~ 37 (38)
T TIGR02098 7 NCKTSFRVVDSQLGANGGKVRCGKCGHVWYA 37 (38)
T ss_pred CCCCEEEeCHHHcCCCCCEEECCCCCCEEEe
Confidence 56666667632 1111126999999987654
No 203
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=30.88 E-value=66 Score=27.72 Aligned_cols=43 Identities=12% Similarity=-0.015 Sum_probs=29.4
Q ss_pred cccCcEEEEEcCCC-hhHHHHHHHHHHHH-Hhc---CceeeEEEeccC
Q 039432 398 VQEGRNICLYGSEN-KDWIIEFNAKMMEI-RRL---GLQVDMVFVGVK 440 (598)
Q Consensus 398 i~egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~---~~~~E~v~Vgkd 440 (598)
+.+++.+.|+|.+. ..-||.+.+.+.++ ++- +..+.+..+.-+
T Consensus 12 ~~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~ 59 (104)
T cd03000 12 VRKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT 59 (104)
T ss_pred hccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc
Confidence 45677899999883 23359999999888 542 445666666554
No 204
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=30.50 E-value=2e+02 Score=23.01 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=15.6
Q ss_pred HHHHHhhccCCccEEEEeC
Q 039432 325 NLIKQEWNFKEEPIMVVLD 343 (598)
Q Consensus 325 r~ike~~~~~~iP~LVvL~ 343 (598)
..+.+..++.|.|++|+-|
T Consensus 73 ~~~~~~~g~~g~Pt~v~~~ 91 (98)
T cd02972 73 TALARALGVTGTPTFVVNG 91 (98)
T ss_pred HHHHHHcCCCCCCEEEECC
Confidence 3555788999999999987
No 205
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=30.45 E-value=1.3e+02 Score=24.14 Aligned_cols=44 Identities=16% Similarity=0.303 Sum_probs=33.1
Q ss_pred EEEEEcCCChhHHHHHHHHHHHH-HhcCceeeEEEeccCCchhhH
Q 039432 403 NICLYGSENKDWIIEFNAKMMEI-RRLGLQVDMVFVGVKNPSEQV 446 (598)
Q Consensus 403 ~I~LYgg~d~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~~~e~v 446 (598)
.|-+|.+.....|+...+.+.++ ++.+..++++.|..+...+..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~ 46 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKA 46 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHH
Confidence 35678887778889999999998 665666888888876555543
No 206
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.38 E-value=18 Score=37.63 Aligned_cols=25 Identities=32% Similarity=0.582 Sum_probs=16.4
Q ss_pred cccccccCC-CC---CccceeecCCCCccc
Q 039432 566 SHPNVLHYA-EG---SREGIVVCEKCKRLL 591 (598)
Q Consensus 566 ~~~~~~p~~-~g---~ip~~i~CpeC~R~M 591 (598)
|| ..+|.. .. .=-+.|.||.|||..
T Consensus 203 C~-m~l~~~~~~~V~~~d~iv~CP~CgRIL 231 (239)
T COG1579 203 CH-MKLPSQTLSKVRKKDEIVFCPYCGRIL 231 (239)
T ss_pred Ce-eeecHHHHHHHhcCCCCccCCccchHH
Confidence 67 777722 11 224678999999964
No 207
>PF01396 zf-C4_Topoisom: Topoisomerase DNA binding C4 zinc finger; InterPro: IPR013498 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. This entry represents the zinc-finger domain found in type IA topoisomerases, including bacterial and archaeal topoisomerase I and III enzymes, and in eukaryotic topoisomerase III enzymes. Escherichia coli topoisomerase I proteins contain five copies of a zinc-ribbon-like domain at their C terminus, two of which have lost their cysteine residues and are therefore probably not able to bind zinc []. This domain is still considered to be a member of the zinc-ribbon superfamily despite not being able to bind zinc. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0005694 chromosome
Probab=30.21 E-value=22 Score=26.83 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=9.7
Q ss_pred eecCCCCcccee
Q 039432 582 VVCEKCKRLLKM 593 (598)
Q Consensus 582 i~CpeC~R~ME~ 593 (598)
..||+||..|-.
T Consensus 2 ~~CP~Cg~~lv~ 13 (39)
T PF01396_consen 2 EKCPKCGGPLVL 13 (39)
T ss_pred cCCCCCCceeEE
Confidence 579999988853
No 208
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=30.20 E-value=1.4e+02 Score=24.82 Aligned_cols=40 Identities=10% Similarity=-0.007 Sum_probs=28.5
Q ss_pred CcEEEEEcCCC-hhHHHHHHHHHHHH-HhcCceeeEEEeccC
Q 039432 401 GRNICLYGSEN-KDWIIEFNAKMMEI-RRLGLQVDMVFVGVK 440 (598)
Q Consensus 401 gK~I~LYgg~d-~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd 440 (598)
+|.+.++|.++ ..+||.+.+.+.++ +.....+-++.|.-+
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~ 55 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE 55 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc
Confidence 68999988885 36679999999998 553445555655444
No 209
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=29.82 E-value=21 Score=28.24 Aligned_cols=10 Identities=40% Similarity=0.873 Sum_probs=5.4
Q ss_pred ecCCCCccce
Q 039432 583 VCEKCKRLLK 592 (598)
Q Consensus 583 ~CpeC~R~ME 592 (598)
.||-|+|++.
T Consensus 22 ~CPlC~r~l~ 31 (54)
T PF04423_consen 22 CCPLCGRPLD 31 (54)
T ss_dssp E-TTT--EE-
T ss_pred cCCCCCCCCC
Confidence 7999999985
No 210
>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.
Probab=29.45 E-value=22 Score=29.08 Aligned_cols=14 Identities=14% Similarity=0.513 Sum_probs=7.0
Q ss_pred ceeecCCCCcccee
Q 039432 580 GIVVCEKCKRLLKM 593 (598)
Q Consensus 580 ~~i~CpeC~R~ME~ 593 (598)
..-+||+|++++..
T Consensus 23 ~PatCP~C~a~~~~ 36 (54)
T PF09237_consen 23 QPATCPICGAVIRQ 36 (54)
T ss_dssp --EE-TTT--EESS
T ss_pred CCCCCCcchhhccc
Confidence 34589999998763
No 211
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=29.32 E-value=3e+02 Score=25.23 Aligned_cols=91 Identities=12% Similarity=0.089 Sum_probs=51.9
Q ss_pred ecceecCcEEEEEEecCCCCChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEc-CCCCCCChHhHHHHHHhhcCCCeeeee
Q 039432 236 GVSELKDKVVILLVSKPELLPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPI-SSSETWTDVEERNFELFSCSLPWYSVR 314 (598)
Q Consensus 236 ~Is~L~gK~VlLyfSal~~~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpi-d~~~~W~D~de~~Fe~~~~~MPWyAVp 314 (598)
+++.+++|+=.|.++|.+ .-...+.. +.+.+++-. ..=.+=.|+++.+ +. .....+
T Consensus 2 ~L~~~~w~~R~lvv~aps-~~d~~~~~-q~~~L~~~~--~~l~eRdi~v~~i~~~------~~~~~~------------- 58 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPS-ADDPRYQQ-QLEELQNNR--CGLDERDIVVIVITGD------GARSPG------------- 58 (118)
T ss_pred ChhHhcCcCceEEEECCC-CCCHHHHH-HHHHHHhhh--hccccCceEEEEEeCC------cccccc-------------
Confidence 456788888777777776 33332323 233443321 1112345677776 21 111111
Q ss_pred cCCcccHHHHHHHHHhhccC-CccEEEEeCCCCceech
Q 039432 315 QPQLLNSAVVNLIKQEWNFK-EEPIMVVLDSQGMVTNS 351 (598)
Q Consensus 315 ~~~~i~~~~~r~ike~~~~~-~iP~LVvL~pqGkv~~~ 351 (598)
...+....+.|++.|++. +--.+|++|.||.+=..
T Consensus 59 --~~~~~~~~~~lr~~l~~~~~~f~~vLiGKDG~vK~r 94 (118)
T PF13778_consen 59 --KPLSPEDIQALRKRLRIPPGGFTVVLIGKDGGVKLR 94 (118)
T ss_pred --CcCCHHHHHHHHHHhCCCCCceEEEEEeCCCcEEEe
Confidence 233567788888999974 34789999999977543
No 212
>PRK09381 trxA thioredoxin; Provisional
Probab=28.95 E-value=93 Score=26.84 Aligned_cols=42 Identities=7% Similarity=-0.085 Sum_probs=30.6
Q ss_pred cCcEEEEEcCCC-hhHHHHHHHHHHHH-HhcCceeeEEEeccCC
Q 039432 400 EGRNICLYGSEN-KDWIIEFNAKMMEI-RRLGLQVDMVFVGVKN 441 (598)
Q Consensus 400 egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~ 441 (598)
.++.+.++|-+. ..-|+.+.+.+.++ +.-+..+.++.|..++
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~ 63 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ 63 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC
Confidence 578888888773 23369999999999 6544457777777664
No 213
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=28.89 E-value=52 Score=32.74 Aligned_cols=53 Identities=17% Similarity=0.350 Sum_probs=41.4
Q ss_pred cCCceeecceecCcEEEEEEecCCC-CChhhhhHHHHHHhcCcCCCCCCCCeEEEEEEc
Q 039432 230 MKSEQLGVSELKDKVVILLVSKPEL-LPLEKLFLLVHQTYDHPHNKNLEESYKIVWVPI 287 (598)
Q Consensus 230 ~~~~kV~Is~L~gK~VlLyfSal~~-~~~~~~~~~L~~iY~~l~~~~~~~~fEIVwIpi 287 (598)
.+|+.|+++.++||.|++-=-|.-| -.....+. |.+.|++.+ ...|+|+--|.
T Consensus 22 ~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~-l~~L~~ky~----~~Gl~ILaFPC 75 (171)
T KOG1651|consen 22 LDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTE-LNELYEKYK----DQGLEILAFPC 75 (171)
T ss_pred CCCCCccHHHhCCeEEEEEEcccccccchhcchh-HHHHHHHHh----hCCeEEEEecc
Confidence 5677999999999998888777775 33435556 888888873 35699999998
No 214
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.85 E-value=1.7e+02 Score=27.23 Aligned_cols=81 Identities=16% Similarity=0.270 Sum_probs=61.4
Q ss_pred EEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcccHH---HHHHHHHhhccCCccEEEEeCCCCceechhHHHHHHH
Q 039432 283 VWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNSA---VVNLIKQEWNFKEEPIMVVLDSQGMVTNSNALDMVLI 359 (598)
Q Consensus 283 VwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~~~---~~r~ike~~~~~~iP~LVvL~pqGkv~~~nA~~mI~~ 359 (598)
||++- |++-+.........|=.+|.||.-.|-. ..+.|+|+++|+|. |-. -|.|+-.. +.++..
T Consensus 2 v~l~~-------d~~~~~l~~~L~~l~lI~i~FP~F~DGRgfS~ArlLR~r~gy~Ge--lRA---~Gdvl~DQ-l~~l~R 68 (110)
T PF06073_consen 2 VWLAP-------DDDPEELADDLDRLPLIAIDFPKFTDGRGFSQARLLRERYGYTGE--LRA---VGDVLRDQ-LFYLRR 68 (110)
T ss_pred eecCC-------CCCHHHHHhhccCCCEEEEECCCcCCchHhHHHHHHHHHcCCCCc--EEE---eccchHHH-HHHHHH
Confidence 67775 6677788888999999999999866655 46789999999998 444 45566444 556888
Q ss_pred hCcCccCCCchhHHhhh
Q 039432 360 WGARGYPFSVTREIELW 376 (598)
Q Consensus 360 wG~~AfPFT~~r~e~L~ 376 (598)
=|-++|-.+..+-.+.|
T Consensus 69 ~GFdsf~l~~~~~~~~~ 85 (110)
T PF06073_consen 69 CGFDSFELREDQDPEDA 85 (110)
T ss_pred cCCCEEEeCCCCCHHHH
Confidence 99999999875544443
No 215
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=28.65 E-value=82 Score=27.50 Aligned_cols=39 Identities=8% Similarity=0.161 Sum_probs=28.6
Q ss_pred ccCcEEEEEcCCChhH---HHHHHHHHHHH-HhcCceeeEEEeccC
Q 039432 399 QEGRNICLYGSENKDW---IIEFNAKMMEI-RRLGLQVDMVFVGVK 440 (598)
Q Consensus 399 ~egK~I~LYgg~d~~W---ir~FT~~l~~i-~~~~~~~E~v~Vgkd 440 (598)
..||.+.++|.+ .| ||.+.+.+.++ +.-+ .+..+-|..+
T Consensus 16 ~~g~~vlV~F~a--~WC~~C~~~~p~l~~la~~~~-~~~~~~vd~~ 58 (100)
T cd02999 16 NREDYTAVLFYA--SWCPFSASFRPHFNALSSMFP-QIRHLAIEES 58 (100)
T ss_pred cCCCEEEEEEEC--CCCHHHHhHhHHHHHHHHHhc-cCceEEEECC
Confidence 379999999999 66 59999999999 5532 2445555443
No 216
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=28.48 E-value=75 Score=27.67 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=29.4
Q ss_pred cCcEEEEEcCCCh-hHHHHHHHHHHHH-HhcCceeeEEEeccC
Q 039432 400 EGRNICLYGSENK-DWIIEFNAKMMEI-RRLGLQVDMVFVGVK 440 (598)
Q Consensus 400 egK~I~LYgg~d~-~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd 440 (598)
.||.+.++|.+++ .-|+.+.+.+.++ ++- ..+.++.|..|
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d 55 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGD 55 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECC
Confidence 4899999999931 3349999999999 554 34566667665
No 217
>PF14369 zf-RING_3: zinc-finger
Probab=27.80 E-value=41 Score=24.92 Aligned_cols=24 Identities=17% Similarity=0.414 Sum_probs=13.4
Q ss_pred CCCcccccccCCCCCccceeecCCCCc
Q 039432 563 EPCSHPNVLHYAEGSREGIVVCEKCKR 589 (598)
Q Consensus 563 ~~C~~~~~~p~~~g~ip~~i~CpeC~R 589 (598)
|.|++.+.+..... +.+.||.|+-
T Consensus 6 h~C~~~V~~~~~~~---~~~~CP~C~~ 29 (35)
T PF14369_consen 6 HQCNRFVRIAPSPD---SDVACPRCHG 29 (35)
T ss_pred ccCCCEeEeCcCCC---CCcCCcCCCC
Confidence 67998443322211 2247999973
No 218
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=27.39 E-value=30 Score=25.65 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=15.8
Q ss_pred CCcccccccCCCCCccc---eeecCCCCcc
Q 039432 564 PCSHPNVLHYAEGSREG---IVVCEKCKRL 590 (598)
Q Consensus 564 ~C~~~~~~p~~~g~ip~---~i~CpeC~R~ 590 (598)
.|...+.+| ...||+ .+.|+.||..
T Consensus 7 ~C~~~y~i~--d~~ip~~g~~v~C~~C~~~ 34 (36)
T PF13717_consen 7 NCQAKYEID--DEKIPPKGRKVRCSKCGHV 34 (36)
T ss_pred CCCCEEeCC--HHHCCCCCcEEECCCCCCE
Confidence 355556665 334554 4999999864
No 219
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=26.99 E-value=42 Score=26.10 Aligned_cols=22 Identities=23% Similarity=0.635 Sum_probs=14.5
Q ss_pred CCcccccccCCCCCccceeecCCCCcc
Q 039432 564 PCSHPNVLHYAEGSREGIVVCEKCKRL 590 (598)
Q Consensus 564 ~C~~~~~~p~~~g~ip~~i~CpeC~R~ 590 (598)
.|.+.+++. -.+.|.||+||..
T Consensus 7 ~Cg~~~~~~-----~~~~irC~~CG~r 28 (44)
T smart00659 7 ECGRENEIK-----SKDVVRCRECGYR 28 (44)
T ss_pred CCCCEeecC-----CCCceECCCCCce
Confidence 366544443 3478999999953
No 220
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=26.19 E-value=68 Score=33.59 Aligned_cols=40 Identities=10% Similarity=0.163 Sum_probs=31.9
Q ss_pred cCcEEEEEcCCC-hhHHHHHHHHHHHH-HhcCceeeEEEeccCC
Q 039432 400 EGRNICLYGSEN-KDWIIEFNAKMMEI-RRLGLQVDMVFVGVKN 441 (598)
Q Consensus 400 egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~ 441 (598)
.||++.+||-+. ..-|+.+.+.+.++ ++.+ ++++.|+.|.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~ 206 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDG 206 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCC
Confidence 689999999883 23349999999999 6555 7899999884
No 221
>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.98 E-value=29 Score=27.09 Aligned_cols=11 Identities=27% Similarity=0.776 Sum_probs=9.3
Q ss_pred eecCCCCccce
Q 039432 582 VVCEKCKRLLK 592 (598)
Q Consensus 582 i~CpeC~R~ME 592 (598)
-.||-|||||.
T Consensus 9 K~C~~C~rpf~ 19 (42)
T PF10013_consen 9 KICPVCGRPFT 19 (42)
T ss_pred CcCcccCCcch
Confidence 46999999984
No 222
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=25.80 E-value=3.2e+02 Score=27.84 Aligned_cols=95 Identities=14% Similarity=0.173 Sum_probs=53.7
Q ss_pred cCcEEEEEEecCCCCCh-hhhhHHHHHHhcCcCCCCCCCCeEEEEE--Ec-C-CCC-------CCChH-hHHHHHHhhcC
Q 039432 241 KDKVVILLVSKPELLPL-EKLFLLVHQTYDHPHNKNLEESYKIVWV--PI-S-SSE-------TWTDV-EERNFELFSCS 307 (598)
Q Consensus 241 ~gK~VlLyfSal~~~~~-~~~~~~L~~iY~~l~~~~~~~~fEIVwI--pi-d-~~~-------~W~D~-de~~Fe~~~~~ 307 (598)
.||.+...||+.+||-| ..... |.++- + .+.+|.++ |+ . .+. -|-.. ..+.|+..+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~-l~~~~-~-------~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~ 176 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQ-MKDYN-A-------LGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKG 176 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHH-HHHHh-c-------CCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcC
Confidence 47899999999998544 43334 44432 2 23666665 44 1 111 24322 34566655433
Q ss_pred CCeeeeecCC-cccHHHHHHHHHhhccCCccEEEEeCCCCcee
Q 039432 308 LPWYSVRQPQ-LLNSAVVNLIKQEWNFKEEPIMVVLDSQGMVT 349 (598)
Q Consensus 308 MPWyAVp~~~-~i~~~~~r~ike~~~~~~iP~LVvL~pqGkv~ 349 (598)
-+ ++-.. ..+.+....+.+.++++|.|++|+ ++|+++
T Consensus 177 ~~---~~~~~c~~~v~~~~~la~~lgi~gTPtiv~--~~G~~~ 214 (232)
T PRK10877 177 KD---VSPASCDVDIADHYALGVQFGVQGTPAIVL--SNGTLV 214 (232)
T ss_pred CC---CCcccccchHHHhHHHHHHcCCccccEEEE--cCCeEe
Confidence 21 11111 112345567779999999999995 467776
No 223
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=25.47 E-value=34 Score=28.25 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=7.9
Q ss_pred ceeecCCCCcccee
Q 039432 580 GIVVCEKCKRLLKM 593 (598)
Q Consensus 580 ~~i~CpeC~R~ME~ 593 (598)
.++.||.||++-+.
T Consensus 1 m~v~CP~C~k~~~~ 14 (57)
T PF03884_consen 1 MTVKCPICGKPVEW 14 (57)
T ss_dssp -EEE-TTT--EEE-
T ss_pred CcccCCCCCCeecc
Confidence 37899999998775
No 224
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=25.26 E-value=1.9e+02 Score=25.83 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=38.7
Q ss_pred cCcEEEEEc-CCChhHHHHHHHHHHHH-Hh-cCceeeEEEeccCCchhhHHHHhhhhccccccccC--Ccc
Q 039432 400 EGRNICLYG-SENKDWIIEFNAKMMEI-RR-LGLQVDMVFVGVKNPSEQVRNVLATINQEMHTTLL--SFT 465 (598)
Q Consensus 400 egK~I~LYg-g~d~~Wir~FT~~l~~i-~~-~~~~~E~v~Vgkd~~~e~v~~~~~~i~~e~ls~~~--d~~ 465 (598)
.++.+.+++ +....-|++-.+.+.++ ++ .+..++++.|+.|++.+ ++ +......+++.+ |++
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~-~~---~~~~~~~~~~p~~~D~~ 89 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEK-LE---AFDKGKFLPFPVYADPD 89 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHH-HH---HHHHhcCCCCeEEECCc
Confidence 355666665 44445568778888877 44 44578999999886533 32 344455555554 654
No 225
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=25.18 E-value=1.1e+02 Score=26.53 Aligned_cols=45 Identities=9% Similarity=-0.017 Sum_probs=30.5
Q ss_pred cccCcEEEEEcCCCh-hHHHHHHHHHHHH-Hhc------CceeeEEEeccCCc
Q 039432 398 VQEGRNICLYGSENK-DWIIEFNAKMMEI-RRL------GLQVDMVFVGVKNP 442 (598)
Q Consensus 398 i~egK~I~LYgg~d~-~Wir~FT~~l~~i-~~~------~~~~E~v~Vgkd~~ 442 (598)
+.+++.++++|.+.+ ..|+++.+.+.++ +.. .-.+.+..|.-|+.
T Consensus 15 i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~ 67 (108)
T cd02996 15 LQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE 67 (108)
T ss_pred HhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 567899999999942 3458888888777 431 12466777766643
No 226
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=24.86 E-value=1e+02 Score=26.48 Aligned_cols=34 Identities=32% Similarity=0.718 Sum_probs=24.9
Q ss_pred ccccc--cCcEEEEEcCCChhHHHHHHHHHHHH-HhcCceeeEE
Q 039432 395 NKWVQ--EGRNICLYGSENKDWIIEFNAKMMEI-RRLGLQVDMV 435 (598)
Q Consensus 395 ~~~i~--egK~I~LYgg~d~~Wir~FT~~l~~i-~~~~~~~E~v 435 (598)
.+|+. .||..|||-+.|.+ ++++. +.+|.+.+-+
T Consensus 38 ~s~v~~d~~k~~Cly~Ap~~e-------aV~~~~~~aG~p~d~I 74 (77)
T PF14026_consen 38 RSYVSEDDGKIFCLYEAPDEE-------AVREHARRAGLPADRI 74 (77)
T ss_pred EEEEecCCCeEEEEEECCCHH-------HHHHHHHHcCCCcceE
Confidence 35666 89999999999866 55666 5667766543
No 227
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=24.66 E-value=96 Score=25.97 Aligned_cols=42 Identities=10% Similarity=0.050 Sum_probs=28.1
Q ss_pred cccCcEEEEEcCCC-hhHHHHHHHHHHHH-Hh-cC--ceeeEEEeccC
Q 039432 398 VQEGRNICLYGSEN-KDWIIEFNAKMMEI-RR-LG--LQVDMVFVGVK 440 (598)
Q Consensus 398 i~egK~I~LYgg~d-~~Wir~FT~~l~~i-~~-~~--~~~E~v~Vgkd 440 (598)
+..|+ +.++|.++ ..-|+.+.+.+.++ +. .+ ..+.++.|.-+
T Consensus 14 ~~~~~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~ 60 (102)
T cd03005 14 IAEGN-HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT 60 (102)
T ss_pred hhcCC-EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC
Confidence 44565 88888883 23359999999888 54 23 36777777655
No 228
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=23.84 E-value=34 Score=23.15 Aligned_cols=8 Identities=25% Similarity=0.825 Sum_probs=4.4
Q ss_pred ecCCCCcc
Q 039432 583 VCEKCKRL 590 (598)
Q Consensus 583 ~CpeC~R~ 590 (598)
-||+||.+
T Consensus 15 fC~~CG~~ 22 (23)
T PF13240_consen 15 FCPNCGTP 22 (23)
T ss_pred chhhhCCc
Confidence 36666653
No 229
>TIGR01031 rpmF_bact ribosomal protein L32. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus.
Probab=23.49 E-value=44 Score=27.19 Aligned_cols=14 Identities=29% Similarity=0.712 Sum_probs=8.7
Q ss_pred ccceeecCCCCccc
Q 039432 578 REGIVVCEKCKRLL 591 (598)
Q Consensus 578 ip~~i~CpeC~R~M 591 (598)
.|..+.||+||.++
T Consensus 23 ~p~l~~C~~cG~~~ 36 (55)
T TIGR01031 23 APTLVVCPNCGEFK 36 (55)
T ss_pred CCcceECCCCCCcc
Confidence 45666677777544
No 230
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=23.06 E-value=1.2e+02 Score=25.38 Aligned_cols=42 Identities=5% Similarity=-0.008 Sum_probs=30.4
Q ss_pred cCcEEEEEcCCC-hhHHHHHHHHHHHH-Hhc--CceeeEEEeccCC
Q 039432 400 EGRNICLYGSEN-KDWIIEFNAKMMEI-RRL--GLQVDMVFVGVKN 441 (598)
Q Consensus 400 egK~I~LYgg~d-~~Wir~FT~~l~~i-~~~--~~~~E~v~Vgkd~ 441 (598)
.+|.+++++.++ ...|++|.+.+.++ +.. ...+.++.+.-++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence 567888888884 35569999999888 543 3467777777664
No 231
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=22.79 E-value=1.2e+02 Score=28.64 Aligned_cols=25 Identities=0% Similarity=-0.033 Sum_probs=19.2
Q ss_pred cccCcEEEEEcCCC-hhHHHHHHHHH
Q 039432 398 VQEGRNICLYGSEN-KDWIIEFNAKM 422 (598)
Q Consensus 398 i~egK~I~LYgg~d-~~Wir~FT~~l 422 (598)
-++||.|+||+++| ..||+.+....
T Consensus 20 k~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 20 KKSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HHCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 45899999999996 36667776654
No 232
>PRK02935 hypothetical protein; Provisional
Probab=22.67 E-value=38 Score=31.36 Aligned_cols=12 Identities=33% Similarity=0.852 Sum_probs=7.5
Q ss_pred eeecCCCCccce
Q 039432 581 IVVCEKCKRLLK 592 (598)
Q Consensus 581 ~i~CpeC~R~ME 592 (598)
.|.||+|+++.+
T Consensus 70 qV~CP~C~K~TK 81 (110)
T PRK02935 70 QVICPSCEKPTK 81 (110)
T ss_pred eeECCCCCchhh
Confidence 456777776654
No 233
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=22.43 E-value=76 Score=34.57 Aligned_cols=163 Identities=15% Similarity=0.200 Sum_probs=107.3
Q ss_pred ChhhhhHHHHHHhcCcCCCCC-CCCeEEEEEEcCCCCCCChHhH--HHHHHhhcCCCeeeeecCCcccHHHHHHHHHhhc
Q 039432 256 PLEKLFLLVHQTYDHPHNKNL-EESYKIVWVPISSSETWTDVEE--RNFELFSCSLPWYSVRQPQLLNSAVVNLIKQEWN 332 (598)
Q Consensus 256 ~~~~~~~~L~~iY~~l~~~~~-~~~fEIVwIpid~~~~W~D~de--~~Fe~~~~~MPWyAVp~~~~i~~~~~r~ike~~~ 332 (598)
|..|+.......|+=|+.-+. ...|..+=||-|. -..|... ..|.+--.=+| +=||+. .+|....|-+-|.
T Consensus 94 P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDE--VYG~l~~~~~~FtE~tp~~P--sSPYSA--SKAasD~lVray~ 167 (340)
T COG1088 94 PAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDE--VYGDLGLDDDAFTETTPYNP--SSPYSA--SKAASDLLVRAYV 167 (340)
T ss_pred hhhhhhcchHHHHHHHHHHHHhcccceEEEecccc--ccccccCCCCCcccCCCCCC--CCCcch--hhhhHHHHHHHHH
Confidence 667765546777877733222 3348889999742 2333333 26766555555 667866 5677787777776
Q ss_pred c-CCccEEEEeCCCCceechhHHHHHHHhCcCccCCCchhHHhhhcccccccccccccCCcccccccccCcEEEEEc-CC
Q 039432 333 F-KEEPIMVVLDSQGMVTNSNALDMVLIWGARGYPFSVTREIELWQEEDWTLPLMIDEIHPLLNKWVQEGRNICLYG-SE 410 (598)
Q Consensus 333 ~-~~iP~LVvL~pqGkv~~~nA~~mI~~wG~~AfPFT~~r~e~L~~~e~w~lelLvd~id~~I~~~i~egK~I~LYg-g~ 410 (598)
- =|+|.++.=.+ .-||..-||= + |+. ..|.+ ...||.+=||| |.
T Consensus 168 ~TYglp~~ItrcS-------------NNYGPyqfpE------------K-----lIP---~~I~n-al~g~~lpvYGdG~ 213 (340)
T COG1088 168 RTYGLPATITRCS-------------NNYGPYQFPE------------K-----LIP---LMIIN-ALLGKPLPVYGDGL 213 (340)
T ss_pred HHcCCceEEecCC-------------CCcCCCcCch------------h-----hhH---HHHHH-HHcCCCCceecCCc
Confidence 6 48998876544 3588877774 1 111 12222 56999999999 77
Q ss_pred C-hhHH--HHHHHHHHHHHhcCceeeEEEeccCCc---hhhHHHHhhhhccccc
Q 039432 411 N-KDWI--IEFNAKMMEIRRLGLQVDMVFVGVKNP---SEQVRNVLATINQEMH 458 (598)
Q Consensus 411 d-~~Wi--r~FT~~l~~i~~~~~~~E~v~Vgkd~~---~e~v~~~~~~i~~e~l 458 (598)
+ -+|+ .+...++..|=++|..=|++-||-.|. -|-|+.|++.+..++-
T Consensus 214 ~iRDWl~VeDh~~ai~~Vl~kg~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~ 267 (340)
T COG1088 214 QIRDWLYVEDHCRAIDLVLTKGKIGETYNIGGGNERTNLEVVKTICELLGKDKP 267 (340)
T ss_pred ceeeeEEeHhHHHHHHHHHhcCcCCceEEeCCCccchHHHHHHHHHHHhCcccc
Confidence 7 5998 888888888833466689999999864 4556666666665544
No 234
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=22.35 E-value=1.3e+02 Score=26.98 Aligned_cols=45 Identities=4% Similarity=0.013 Sum_probs=32.5
Q ss_pred cccCcEEEEEcCCCh-hHHHHHHHHHHHH-HhcCceeeEEEeccCCch
Q 039432 398 VQEGRNICLYGSENK-DWIIEFNAKMMEI-RRLGLQVDMVFVGVKNPS 443 (598)
Q Consensus 398 i~egK~I~LYgg~d~-~Wir~FT~~l~~i-~~~~~~~E~v~Vgkd~~~ 443 (598)
+.+++.+.+||.+++ ..|+...+.+.++ ++-. .+.++.|.-+...
T Consensus 19 i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~~~ 65 (113)
T cd02989 19 VKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEKAP 65 (113)
T ss_pred HhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEcccCH
Confidence 556788999998842 5579999999999 5422 3567888877533
No 235
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=22.22 E-value=5.8e+02 Score=29.20 Aligned_cols=158 Identities=11% Similarity=-0.013 Sum_probs=92.0
Q ss_pred hhhhHHHHHHhcCcCCCCCCCCeEEEEEEcCCCCCCChHhHHHHHHhhcCCCeeeeecCCcccHHHHHHHHHhhccCCcc
Q 039432 258 EKLFLLVHQTYDHPHNKNLEESYKIVWVPISSSETWTDVEERNFELFSCSLPWYSVRQPQLLNSAVVNLIKQEWNFKEEP 337 (598)
Q Consensus 258 ~~~~~~L~~iY~~l~~~~~~~~fEIVwIpid~~~~W~D~de~~Fe~~~~~MPWyAVp~~~~i~~~~~r~ike~~~~~~iP 337 (598)
+++..+|.+++++|+ +..++++.-- .+.+..++-++--+++.+-=|.+.+.+-+ ...-+.+.+.+++...|
T Consensus 351 ~~~~~~l~~~~~~l~-----~~v~l~~~~~-~~~~~~~e~~~~l~e~~~~s~~i~~~~~~---~~~~~~~~~~~~v~~~P 421 (555)
T TIGR03143 351 DSLRQQLVGIFGRLE-----NPVTLLLFLD-GSNEKSAELQSFLGEFASLSEKLNSEAVN---RGEEPESETLPKITKLP 421 (555)
T ss_pred HHHHHHHHHHHHhcC-----CCEEEEEEEC-CCchhhHHHHHHHHHHHhcCCcEEEEEec---cccchhhHhhcCCCcCC
Confidence 445455889988864 4588855432 23334444455555555555888886633 12234556788999999
Q ss_pred EEEEeCCCCceechhHHHHHHHhCc-CccCCCchhHHhhhcccccccccccccCCccc----ccccc--cCc-EEEEEcC
Q 039432 338 IMVVLDSQGMVTNSNALDMVLIWGA-RGYPFSVTREIELWQEEDWTLPLMIDEIHPLL----NKWVQ--EGR-NICLYGS 409 (598)
Q Consensus 338 ~LVvL~pqGkv~~~nA~~mI~~wG~-~AfPFT~~r~e~L~~~e~w~lelLvd~id~~I----~~~i~--egK-~I~LYgg 409 (598)
.+++++.+|+-.+ |+=+|+ .++-|++-=+.-+. +++-.+.+ .+.++ +++ .|=+|-|
T Consensus 422 ~~~i~~~~~~~~~------i~f~g~P~G~Ef~s~i~~i~~----------~~~~~~~l~~~~~~~i~~~~~~~~i~v~~~ 485 (555)
T TIGR03143 422 TVALLDDDGNYTG------LKFHGVPSGHELNSFILALYN----------AAGPGQPLGEELLEKIKKITKPVNIKIGVS 485 (555)
T ss_pred EEEEEeCCCcccc------eEEEecCccHhHHHHHHHHHH----------hcCCCCCCCHHHHHHHHhcCCCeEEEEEEC
Confidence 9999986664211 344553 34666432211111 12223333 22222 344 5778878
Q ss_pred CChhHHHHHHHHHHHH-Hhc-CceeeEEEeccC
Q 039432 410 ENKDWIIEFNAKMMEI-RRL-GLQVDMVFVGVK 440 (598)
Q Consensus 410 ~d~~Wir~FT~~l~~i-~~~-~~~~E~v~Vgkd 440 (598)
.....|.+=..++.++ .+. ++..||+-+..-
T Consensus 486 ~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~ 518 (555)
T TIGR03143 486 LSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHF 518 (555)
T ss_pred CCCCCcHHHHHHHHHHHHhCCCceEEEEECccc
Confidence 8888897666666666 554 788998877654
No 236
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=22.12 E-value=40 Score=23.39 Aligned_cols=10 Identities=20% Similarity=0.381 Sum_probs=7.6
Q ss_pred ceeecCCCCc
Q 039432 580 GIVVCEKCKR 589 (598)
Q Consensus 580 ~~i~CpeC~R 589 (598)
..-.||+||.
T Consensus 15 v~f~CPnCG~ 24 (24)
T PF07754_consen 15 VPFPCPNCGF 24 (24)
T ss_pred ceEeCCCCCC
Confidence 4568999983
No 237
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=21.07 E-value=1.8e+02 Score=24.20 Aligned_cols=41 Identities=7% Similarity=0.013 Sum_probs=30.8
Q ss_pred cCcEEEEEcCCC-hhHHHHHHHHHHHH-Hh-cC-ceeeEEEeccC
Q 039432 400 EGRNICLYGSEN-KDWIIEFNAKMMEI-RR-LG-LQVDMVFVGVK 440 (598)
Q Consensus 400 egK~I~LYgg~d-~~Wir~FT~~l~~i-~~-~~-~~~E~v~Vgkd 440 (598)
.||.+.|+|.++ ..+|+.|.+.+.++ +. ++ ..+.++.|.-+
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 568888888775 47779999999999 54 33 46777777765
No 238
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=20.96 E-value=1.5e+02 Score=23.66 Aligned_cols=46 Identities=24% Similarity=0.229 Sum_probs=30.7
Q ss_pred ecceecCcEEEEEEecCCCCCh-hhhhHHHHHHhcCcCCCCCCCCeEEEEEEc
Q 039432 236 GVSELKDKVVILLVSKPELLPL-EKLFLLVHQTYDHPHNKNLEESYKIVWVPI 287 (598)
Q Consensus 236 ~Is~L~gK~VlLyfSal~~~~~-~~~~~~L~~iY~~l~~~~~~~~fEIVwIpi 287 (598)
....++++.+.+.|-+.||+.| ...+. |.++.++... ..+++.|-.
T Consensus 26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~-l~~~~~~~~~-----~~~~~~i~~ 72 (127)
T COG0526 26 SLSELKGKPVLVDFWAPWCPPCRAEAPL-LEELAEEYGG-----DVEVVAVNV 72 (127)
T ss_pred ehhhcCCceEEEEEEcCcCHHHHhhchh-HHHHHHHhcC-----CcEEEEEEC
Confidence 3334448888888769998545 44455 8888888631 566777665
No 239
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=20.90 E-value=1.4e+02 Score=26.04 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=30.6
Q ss_pred ccCcEEEEEcCCC-hhHHHHHHHHHHHH-Hh-cCceeeEEEeccC
Q 039432 399 QEGRNICLYGSEN-KDWIIEFNAKMMEI-RR-LGLQVDMVFVGVK 440 (598)
Q Consensus 399 ~egK~I~LYgg~d-~~Wir~FT~~l~~i-~~-~~~~~E~v~Vgkd 440 (598)
+.||.+++.|.++ ...|+++.+.+.++ +. ++..+.+..|-.|
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d 63 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNAD 63 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECC
Confidence 4688899999884 35569999999888 54 4445777777655
No 240
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=20.38 E-value=95 Score=23.82 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=11.9
Q ss_pred ceeecCCCCccceee
Q 039432 580 GIVVCEKCKRLLKMF 594 (598)
Q Consensus 580 ~~i~CpeC~R~ME~~ 594 (598)
.+.+||.||..+...
T Consensus 19 ~~~vC~~Cg~~~~~~ 33 (52)
T smart00661 19 RRFVCRKCGYEEPIE 33 (52)
T ss_pred CEEECCcCCCeEECC
Confidence 488999999877643
No 241
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=20.23 E-value=47 Score=28.57 Aligned_cols=18 Identities=17% Similarity=0.486 Sum_probs=12.5
Q ss_pred CccceeecCCCCccceee
Q 039432 577 SREGIVVCEKCKRLLKMF 594 (598)
Q Consensus 577 ~ip~~i~CpeC~R~ME~~ 594 (598)
+....-.||+|+.++|+-
T Consensus 26 ~~~~~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 26 DYKKEAFCPDCGQPLEVL 43 (70)
T ss_dssp EEEEEEE-TTT-SB-EEE
T ss_pred cceecccCCCcccHHHHH
Confidence 566788999999999985
No 242
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=20.13 E-value=57 Score=24.67 Aligned_cols=15 Identities=33% Similarity=0.689 Sum_probs=10.6
Q ss_pred ceeecCCCCccceee
Q 039432 580 GIVVCEKCKRLLKMF 594 (598)
Q Consensus 580 ~~i~CpeC~R~ME~~ 594 (598)
..++|++||.++|-.
T Consensus 18 g~~vC~~CG~Vl~e~ 32 (43)
T PF08271_consen 18 GELVCPNCGLVLEEN 32 (43)
T ss_dssp TEEEETTT-BBEE-T
T ss_pred CeEECCCCCCEeecc
Confidence 356999999999865
Done!