BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039436
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 144/317 (45%), Gaps = 27/317 (8%)
Query: 127 DVCLIPNAESYTFHSVSAFTLYLYIWERMGNPNLNEASG----------LIPKDVPSLEG 176
DV + + Y F+ +A L + + P L+E ++P VP
Sbjct: 125 DVAVEFHVPPYIFYPTTANVLSFF----LHLPKLDETVSCEFRELTEPLMLPGCVPVAGK 180
Query: 177 CFTSEFLDSIASEYDHMKFNSGNVYNTSRVIESAYMDLLEKATVAETFNHWALGPFNPV- 235
F D Y + N+ ++ + + +L A A P PV
Sbjct: 181 DFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQEPGLDKPPVYPVG 240
Query: 236 TLPNKGGSNGRHF----CLEWLDKQEKNSVLYVSFGTTTAMSDEQIKELAVGLKQSNQKF 291
L N G + CL+WLD Q SVLYVSFG+ ++ EQ+ ELA+GL S Q+F
Sbjct: 241 PLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRF 300
Query: 292 IWVLRDAD---RGDVFNGEVRRAEL---PKAYEDSVKDKGLVVRDWAPQLEILAHCSTGG 345
+WV+R F+ + L P + + K +G V+ WAPQ ++LAH STGG
Sbjct: 301 LWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGG 360
Query: 346 FMSHCGWNSCMESITMGVPIVAWPMHSDQPRNTXXXXXXXXXXXVMADWARRDEIVTSNV 405
F++HCGWNS +ES+ G+P++AWP++++Q N + A D +V
Sbjct: 361 FLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNA--VLLSEDIRAALRPRAGDDGLVRREE 418
Query: 406 IENAVKRLMASKEGDEI 422
+ VK LM +EG +
Sbjct: 419 VARVVKGLMEGEEGKGV 435
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 26/226 (11%)
Query: 202 NTSRVIESAYMDLLEKATVAETFNH-------WALGPFNPVT-LPNKGGSNGRH-FCLEW 252
+T +I + + DL E++++ ++H +A+GP + PN +H L+W
Sbjct: 211 DTKGIIVNTFSDL-EQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKW 269
Query: 253 LDKQEKNSVLYVSFGTT-TAMSDEQIKELAVGLKQSNQKFIWVLRDADRGDVFNGEVRRA 311
LD+Q SV+++ FG+ + QI+E+A+GLK S +F+W + +
Sbjct: 270 LDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-----------SNSAEKK 318
Query: 312 ELPKAYED--SVKDKGLVVRDWAPQLEILAHCSTGGFMSHCGWNSCMESITMGVPIVAWP 369
P+ + + ++ KG++ WAPQ+E+LAH + GGF+SHCGWNS +ES+ GVPI+ WP
Sbjct: 319 VFPEGFLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWP 377
Query: 370 MHSDQPRNTXXXXXX-XXXXXVMADWARRDEIVTSNVIENAVKRLM 414
++++Q N + D+ + ++V + IE +K LM
Sbjct: 378 IYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM 423
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 122/226 (53%), Gaps = 26/226 (11%)
Query: 202 NTSRVIESAYMDLLEKATVAETFNH-------WALGPFNPVT-LPNKGGSNGRH-FCLEW 252
+T +I + + DL E++++ ++H +A+GP + PN +H L+W
Sbjct: 211 DTKGIIVNTFSDL-EQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKW 269
Query: 253 LDKQEKNSVLYVSFGTT-TAMSDEQIKELAVGLKQSNQKFIWVLRDADRGDVFNGEVRRA 311
LD+Q SV+++ FG+ + QI+E+A+GLK S +F+W + +
Sbjct: 270 LDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-----------SNSAEKK 318
Query: 312 ELPKAYED--SVKDKGLVVRDWAPQLEILAHCSTGGFMSHCGWNSCMESITMGVPIVAWP 369
P+ + + ++ KG++ WAPQ+E+LAH + GGF+SHCGWNS +ES+ GVPI+ WP
Sbjct: 319 VFPEGFLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWP 377
Query: 370 MHSDQPRNTXXXXXX-XXXXXVMADWARRDEIVTSNVIENAVKRLM 414
++++Q N + D+ + ++V + IE +K LM
Sbjct: 378 IYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLM 423
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 118 bits (295), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 81/129 (62%), Gaps = 7/129 (5%)
Query: 249 CLEWLDKQEKNSVLYVSFGTTTAMSDEQIKELAVGLKQSNQKFIWVLRDADRGDVFNGEV 308
CL+WL+ +E SV+YV+FG+TT M+ EQ+ E A GL + F+W++R V G V
Sbjct: 285 CLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRP---DLVIGGSV 341
Query: 309 RRAELPKAYEDSVKDKGLVVRDWAPQLEILAHCSTGGFMSHCGWNSCMESITMGVPIVAW 368
+ + + + D+GL+ W PQ ++L H S GGF++HCGWNS ESI GVP++ W
Sbjct: 342 IFSS---EFTNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCW 397
Query: 369 PMHSDQPRN 377
P +DQP +
Sbjct: 398 PFFADQPTD 406
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 117 bits (294), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 105/191 (54%), Gaps = 18/191 (9%)
Query: 229 LGPFNPVTLPNKGGSNGRHFCLEWLDKQEKNSVLYVSFGTTTAMSDEQIKELAVGLKQSN 288
+GPFN +T P + S+ H CLEWLD+ E +SV+Y+SFG+ ++ LA L++
Sbjct: 245 VGPFN-LTTPQRKVSD-EHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECG 302
Query: 289 QKFIWVLRDADRGDVFNGEVRRAELPKAYEDSVKDKGLVVRDWAPQLEILAHCSTGGFMS 348
FIW R GD + +LPK + + K KG +V WAPQ+EIL H S G F++
Sbjct: 303 FPFIWSFR----GD------PKEKLPKGFLERTKTKGKIVA-WAPQVEILKHSSVGVFLT 351
Query: 349 HCGWNSCMESITMGVPIVAWPMHSDQPRNTXXXXXXXXXXXVMADWARRDEIVTSNVIEN 408
H GWNS +E I GVP+++ P DQ NT V D + ++T I+
Sbjct: 352 HSGWNSVLECIVGGVPMISRPFFGDQGLNT-ILTESVLEIGVGVD----NGVLTKESIKK 406
Query: 409 AVKRLMASKEG 419
A++ M+S++G
Sbjct: 407 ALELTMSSEKG 417
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 84/153 (54%), Gaps = 21/153 (13%)
Query: 229 LGPFN----PVTLPNKGGSNGRHFCLEWLDKQEKNSVLYVSFGTTTAMSDEQIKELAVGL 284
+GPFN P +PN G CL+WL +++ SV+Y+SFGT T ++ L+ L
Sbjct: 243 IGPFNLITPPPVVPNTTG------CLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEAL 296
Query: 285 KQSNQKFIWVLRDADRGDVFNGEVRRAELPKAYEDSVKDKGLVVRDWAPQLEILAHCSTG 344
+ S FIW LRD R LP+ + + + G+VV WAPQ E+LAH + G
Sbjct: 297 EASRVPFIWSLRDK----------ARVHLPEGFLEKTRGYGMVV-PWAPQAEVLAHEAVG 345
Query: 345 GFMSHCGWNSCMESITMGVPIVAWPMHSDQPRN 377
F++HCGWNS ES+ GVP++ P DQ N
Sbjct: 346 AFVTHCGWNSLWESVAGGVPLICRPFFGDQRLN 378
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 20/128 (15%)
Query: 251 EWLDKQEKNSVLYVSFGTTTA-MSDEQIKELAVGLKQSNQKFIWVLRDADRGDVFNGEVR 309
+++ +N V+ S G+ + ++E+ +A L Q QK +W D ++ D R
Sbjct: 13 DFVQSSGENGVVVFSLGSXVSNXTEERANVIASALAQIPQKVLWRF-DGNKPDTLGLNTR 71
Query: 310 RAELPKAYEDSVKDKGLVVRDWAPQLEILAHCSTGGFMSHCGWNSCMESITMGVPIVAWP 369
+ W PQ ++L H T F++H G N E+I G+P V P
Sbjct: 72 ------------------LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIP 113
Query: 370 MHSDQPRN 377
+ +DQP N
Sbjct: 114 LFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 328 VRDWAPQLEILAHCSTGGFMSHCGWNSCMESITMGVPIVAWPMHSDQPRNT 378
V W PQL+IL S F++H G S ME+++ VP+VA P ++Q N
Sbjct: 309 VHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNA 357
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 328 VRDWAPQLEILAHCSTGGFMSHCGWNSCMESITMGVPIVAWPMHSDQ 374
V DW PQL IL F++H G E + P++A P DQ
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQ 331
>pdb|2FL5|H Chain H, Cofactor-Containing Antibodies: Crystal Structure Of The
Original Yellow Antibody
pdb|2FL5|B Chain B, Cofactor-Containing Antibodies: Crystal Structure Of The
Original Yellow Antibody
pdb|2FL5|D Chain D, Cofactor-Containing Antibodies: Crystal Structure Of The
Original Yellow Antibody
pdb|2FL5|F Chain F, Cofactor-Containing Antibodies: Crystal Structure Of The
Original Yellow Antibody
Length = 220
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%)
Query: 281 AVGLKQSNQKFIWVLRDADRGDVFNGEVRRAELPKAYEDSVKDKGLVVRD 330
A G SN WV + +G + +R E K Y DSVK + V RD
Sbjct: 24 ASGFSLSNYYMTWVRQAPGKGLEWVTNIRPDETEKFYSDSVKGRFTVSRD 73
>pdb|4EH1|A Chain A, Crystal Structure Of The Flavohem-Like-FadNAD BINDING
DOMAIN OF Nitric Oxide Dioxygenase From Vibrio Cholerae
O1 Biovar El Tor
pdb|4EH1|B Chain B, Crystal Structure Of The Flavohem-Like-FadNAD BINDING
DOMAIN OF Nitric Oxide Dioxygenase From Vibrio Cholerae
O1 Biovar El Tor
Length = 243
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 233 NPVTLPNKG-GSNGRHFCLEWLDKQEKNSVLYVSFGTTTAMSDEQIKELAVGLKQSN-QK 290
PV L + G G+ L L KQ K+ V Y+ + +A +E A + Q +
Sbjct: 115 RPVVLISAGVGATPMQAILHTLAKQNKSGVTYL-YACNSAKEHTFAQETAQLIAQQGWMQ 173
Query: 291 FIWVLRDADRGDVFNGEVRRAELPKAYEDS 320
+W RD DV GE++ AEL ED
Sbjct: 174 QVW-YRDESADDVLQGEMQLAELILPIEDG 202
>pdb|3PQV|A Chain A, Cyclase Homolog
pdb|3PQV|B Chain B, Cyclase Homolog
pdb|3PQV|C Chain C, Cyclase Homolog
pdb|3PQV|D Chain D, Cyclase Homolog
Length = 365
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 26/116 (22%)
Query: 220 VAETFNHW-----ALGPFNPVTLPNKGGSNGRHFCLEWLDK-------QEKNSVLYVSFG 267
VAE W A+G V P G++ + LE + K Q ++LY+ G
Sbjct: 246 VAENKQGWRIFSEAIGDAGDV--PEDIGASVAYHLLEEISKSGVVGRNQLPLTILYMIIG 303
Query: 268 TTTAMSDEQIKELAVGLKQSNQKFIWVLRDADRGDVFNGEVRRAELPKAYEDSVKD 323
E I L + Q +++F+W+LRD + VF E+ L K +D+ D
Sbjct: 304 ------KEDIGRLRITKDQIDERFVWLLRDIKK--VFGTEI----LLKPVDDNTTD 347
>pdb|2JD6|0 Chain 0, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|1 Chain 1, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|2 Chain 2, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|3 Chain 3, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|4 Chain 4, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|5 Chain 5, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|6 Chain 6, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|7 Chain 7, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|8 Chain 8, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|9 Chain 9, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|A Chain A, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|B Chain B, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|C Chain C, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|D Chain D, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|E Chain E, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|F Chain F, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|G Chain G, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|H Chain H, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|I Chain I, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|J Chain J, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|K Chain K, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|L Chain L, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|M Chain M, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|N Chain N, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|O Chain O, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|P Chain P, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|Q Chain Q, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|R Chain R, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|S Chain S, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|T Chain T, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|U Chain U, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|V Chain V, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|W Chain W, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|X Chain X, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|Y Chain Y, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD6|Z Chain Z, Crystal Structure Of The As Isolated Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|0 Chain 0, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|1 Chain 1, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|2 Chain 2, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|3 Chain 3, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|4 Chain 4, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|5 Chain 5, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|6 Chain 6, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|7 Chain 7, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|8 Chain 8, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|9 Chain 9, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|A Chain A, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|B Chain B, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|C Chain C, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|D Chain D, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|E Chain E, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|F Chain F, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|G Chain G, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|H Chain H, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|I Chain I, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|J Chain J, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|K Chain K, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|L Chain L, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|M Chain M, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|N Chain N, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|O Chain O, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|P Chain P, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|Q Chain Q, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|R Chain R, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|S Chain S, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|T Chain T, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|U Chain U, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|V Chain V, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|W Chain W, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|X Chain X, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|Y Chain Y, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD7|Z Chain Z, Crystal Structure Of The Fe-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|0 Chain 0, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|1 Chain 1, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|2 Chain 2, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|3 Chain 3, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|4 Chain 4, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|5 Chain 5, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|6 Chain 6, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|7 Chain 7, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|8 Chain 8, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|9 Chain 9, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|A Chain A, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|B Chain B, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|C Chain C, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|D Chain D, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|E Chain E, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|F Chain F, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|G Chain G, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|H Chain H, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|I Chain I, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|J Chain J, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|K Chain K, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|L Chain L, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|M Chain M, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|N Chain N, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|O Chain O, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|P Chain P, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|Q Chain Q, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|R Chain R, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|S Chain S, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|T Chain T, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|U Chain U, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|V Chain V, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|W Chain W, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|X Chain X, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|Y Chain Y, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
pdb|2JD8|Z Chain Z, Crystal Structure Of The Zn-Soaked Ferritin From The
Hyperthermophilic Archaeal Anaerobe Pyrococcus Furiosus
Length = 174
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 144 AFTLYLYIWERMGNPNLNEASGLIPKDVPSLEGCFTSEFLDSIASEYDHMKFNSGNVYNT 203
A Y YI++R G L+E IPK E L + + Y+H KF S ++Y
Sbjct: 54 ALRFYNYIYDRNGRVELDE----IPKPPKEWESP-----LKAFEAAYEHEKFISKSIYEL 104
Query: 204 SRVIESAYMDLLEKATVAETFNHW 227
+ + E EK F W
Sbjct: 105 AALAEE------EKDYSTRAFLEW 122
>pdb|2X17|0 Chain 0, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|1 Chain 1, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|2 Chain 2, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|3 Chain 3, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|4 Chain 4, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|5 Chain 5, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|6 Chain 6, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|7 Chain 7, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|8 Chain 8, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|9 Chain 9, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|G Chain G, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|H Chain H, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|I Chain I, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|J Chain J, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|K Chain K, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|L Chain L, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|M Chain M, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|N Chain N, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|O Chain O, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|P Chain P, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|Q Chain Q, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|R Chain R, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|Y Chain Y, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
pdb|2X17|Z Chain Z, The X-Ray Structure Of Ferritin From Pyrococcus Furiosus
Loaded With Ag(I)
Length = 173
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 15/84 (17%)
Query: 144 AFTLYLYIWERMGNPNLNEASGLIPKDVPSLEGCFTSEFLDSIASEYDHMKFNSGNVYNT 203
A Y YI++R G L+E IPK E L + + Y+H KF S ++Y
Sbjct: 54 ALRFYNYIYDRNGRVELDE----IPKPPKEWESP-----LKAFEAAYEHEKFISKSIYEL 104
Query: 204 SRVIESAYMDLLEKATVAETFNHW 227
+ + E EK F W
Sbjct: 105 AALAEE------EKDYSTRAFLEW 122
>pdb|1W6T|A Chain A, Crystal Structure Of Octameric Enolase From Streptococcus
Pneumoniae
pdb|1W6T|B Chain B, Crystal Structure Of Octameric Enolase From Streptococcus
Pneumoniae
Length = 444
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 162 EASGLIP-KDVPSLEGCFTSEFLDSIASEYDHMKF 195
EA+G +P KDV C +SEF D YD+ KF
Sbjct: 237 EAAGYVPGKDVFLGFDCASSEFYDKERKVYDYTKF 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,644,542
Number of Sequences: 62578
Number of extensions: 450743
Number of successful extensions: 735
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 16
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)