BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039441
(539 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EA7|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-1
pdb|2EA7|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-1
Length = 434
Score = 246 bits (629), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/426 (34%), Positives = 230/426 (53%), Gaps = 66/426 (15%)
Query: 160 ENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHH 218
+NNP+YF+S R FR R++ GH+RVLQRF Q+S ++ ++NYR+ ++ P+TL++PHH
Sbjct: 19 KNNPFYFNSDRWFRTLYRNEWGHIRVLQRFDQRSKQMQNLENYRVVEFKSKPNTLLLPHH 78
Query: 219 SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL 278
+DA+ +LV+L G V+TLV+ + R+S+ +E G +PAGTT++L N D+ + L + KL
Sbjct: 79 ADADFLLVVLNGTAVLTLVNPDSRDSYILEQGHAQKIPAGTTFFLVNPDDNENLRIIKLA 138
Query: 279 QPVNTPGQFR--------VQQ--------------------------------------- 291
PVN P +F+ QQ
Sbjct: 139 IPVNNPHRFQDFFLSSTEAQQSYLRGFSKNILEASFDSDFKEINRVLFGEERQQQQGEES 198
Query: 292 RQQGTIKRASQEQLKALXX-XXXXXXXXXXXXTAPFNLLSRKPIYNNNFGRFFEATPKDY 350
R++G I +EQ++ L PFNL + KPIY+N FGR++E TP+
Sbjct: 199 REEGVIVELKREQIQELMKHAKSSSRKELSSQDEPFNLRNSKPIYSNKFGRWYEMTPEKN 258
Query: 351 QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLXXXXXXXXXXXX 410
QL+++D ++ V++ +G +++PHY+SKA I+++ EG + E+ G
Sbjct: 259 PQLKDLDVFISSVDMKEGALLLPHYSSKAIVIMVINEGEAKIELVG-----------LSD 307
Query: 411 XXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNF 470
+Q+ A LS VF+IP +P+A+ A+ N L F +NA NN+RNF
Sbjct: 308 QQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINATSN--LNFFAFGINAENNRRNF 365
Query: 471 LA-GKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGK-- 527
LA GK N+M+++ E +EV+F + +E++ ES+FV EQQQR+E G+
Sbjct: 366 LAGGKDNVMSEIPTEVLEVSFPASGKKVEKLIKKQ-SESHFVDAQPEQQQREEGHKGRKG 424
Query: 528 SLPSIL 533
SL SIL
Sbjct: 425 SLSSIL 430
>pdb|2EAA|A Chain A, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|B Chain B, Crystal Structure Of Adzuki Bean 7s Globulin-3
pdb|2EAA|C Chain C, Crystal Structure Of Adzuki Bean 7s Globulin-3
Length = 433
Score = 244 bits (624), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 148/437 (33%), Positives = 232/437 (53%), Gaps = 70/437 (16%)
Query: 153 QGSEEEE----ENNPYYFHS-QRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILE 207
Q S+EE ENNP+YF S +RF + GH+R+L RF Q+S ++ ++NYR+ +
Sbjct: 7 QESQEESDSRGENNPFYFSSDRRFHTLFTNQYGHLRILHRFDQRSKQIQNLENYRVVEFK 66
Query: 208 ANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD 267
+ P+TL++PHH+DA+ +LV+L G+ ++TLV+ + R+S+ +E G +PAGTT++L N D
Sbjct: 67 SKPNTLLLPHHADADFLLVVLNGRAILTLVNPDSRDSYILEQGHAQKIPAGTTFFLVNPD 126
Query: 268 NVDRLHVAKLLQPVNTPGQFR--------VQQ---------------------------- 291
+ + L + KL PVN P +F+ QQ
Sbjct: 127 DNENLRIIKLAIPVNNPHRFQDFFLSSTEAQQSYLRGFSKNILEASFDSDFKEINRVLFG 186
Query: 292 -----------RQQGTIKRASQEQLKALXX-XXXXXXXXXXXXTAPFNLLSRKPIYNNNF 339
R++G I +EQ++ L PFNL + KPIY+N F
Sbjct: 187 EERQQQQGEESREEGVIVELKREQIQELMKHAKSSSRKELSSQDEPFNLRNSKPIYSNKF 246
Query: 340 GRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLX 399
GR++E TP+ QL+++D ++ V++ +G +++PHYNSKA I+++ EG + E+ G
Sbjct: 247 GRWYEMTPEKNPQLKDLDVFISSVDMKEGALLLPHYNSKAIVIMVINEGEAKIELVG--- 303
Query: 400 XXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGF 459
+Q+ A LS VF+IP +P+A+ A+ N L F
Sbjct: 304 --------LSDQQQQKQQEESLEVQRYRAELSEDDVFVIPAAYPVAINATSN--LNFFAF 353
Query: 460 SLNARNNQRNFLA-GKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQ 518
+NA NNQRNFLA GK N+M+++ E +EV+F + +E++ ES+FV EQQ
Sbjct: 354 GINAENNQRNFLAGGKDNVMSEIPTEVLEVSFPASGKKVEKLIKKQ-SESHFVDAQPEQQ 412
Query: 519 QRDEAGSGK--SLPSIL 533
QR+E G+ SL SIL
Sbjct: 413 QREEGHKGRKGSLSSIL 429
>pdb|1IPK|A Chain A, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|B Chain B, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
pdb|1IPK|C Chain C, Crystal Structures Of Recombinant And Native Soybean Beta-
Conglycinin Beta Homotrimers
Length = 416
Score = 241 bits (615), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 145/421 (34%), Positives = 222/421 (52%), Gaps = 58/421 (13%)
Query: 158 EEENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVP 216
E+ENNP+YF S F+ + +G +R+LQRF+++S L + +YR+ ++ P+T+++P
Sbjct: 5 EDENNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLP 64
Query: 217 HHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK 276
HH+DA+ +L +L G+ ++TLV+++ R+S+N+ GD +PAGTTYYL N + L + K
Sbjct: 65 HHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIK 124
Query: 277 LLQPVNTPGQF-----RVQQRQQ------------------------------------- 294
L PVN PG++ Q QQ
Sbjct: 125 LAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQE 184
Query: 295 GTIKRASQEQLKALXXXXXXXX-XXXXXXTAPFNLLSRKPIYNNNFGRFFEATPKDYQQL 353
G I S+EQ++ L PFNL SR PIY+NNFG+FFE TP+ QL
Sbjct: 185 GVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQL 244
Query: 354 QEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLXXXXXXXXXXXXXXX 413
+++D ++ V+IN+G +++PH+NSKA I+++ EG E+ G
Sbjct: 245 RDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVG----------IKEQQQK 294
Query: 414 XXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG 473
+Q+ A LS VF+IP +P + A+ N L F +NA NNQRNFLAG
Sbjct: 295 QKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFL--AFGINAENNQRNFLAG 352
Query: 474 -KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSI 532
K N++ Q+ER+ E+AF A+ +ER+ +ESYFV +Q++ G PSI
Sbjct: 353 EKDNVVRQIERQVQELAFPGSAQDVERLLKKQ-RESYFVDAQPQQKEEGSKGRKGPFPSI 411
Query: 533 L 533
L
Sbjct: 412 L 412
>pdb|1IPJ|A Chain A, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|B Chain B, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
pdb|1IPJ|C Chain C, Crystal Structures Of Recombinant And Native Soybean
Beta-Conglycinin Beta Homotrimers Complexes With
N-Acetyl-D-Glucosamine
Length = 416
Score = 239 bits (609), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 144/421 (34%), Positives = 221/421 (52%), Gaps = 58/421 (13%)
Query: 158 EEENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVP 216
E+ENNP+Y S F+ + +G +R+LQRF+++S L + +YR+ ++ P+T+++P
Sbjct: 5 EDENNPFYLRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLP 64
Query: 217 HHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK 276
HH+DA+ +L +L G+ ++TLV+++ R+S+N+ GD +PAGTTYYL N + L + K
Sbjct: 65 HHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKIIK 124
Query: 277 LLQPVNTPGQF-----RVQQRQQ------------------------------------- 294
L PVN PG++ Q QQ
Sbjct: 125 LAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLLGEEEEQRQQE 184
Query: 295 GTIKRASQEQLKALXXXXXXXX-XXXXXXTAPFNLLSRKPIYNNNFGRFFEATPKDYQQL 353
G I S+EQ++ L PFNL SR PIY+NNFG+FFE TP+ QL
Sbjct: 185 GVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQL 244
Query: 354 QEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLXXXXXXXXXXXXXXX 413
+++D ++ V+IN+G +++PH+NSKA I+++ EG E+ G
Sbjct: 245 RDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVG----------IKEQQQK 294
Query: 414 XXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG 473
+Q+ A LS VF+IP +P + A+ N L F +NA NNQRNFLAG
Sbjct: 295 QKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFL--AFGINAENNQRNFLAG 352
Query: 474 -KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSI 532
K N++ Q+ER+ E+AF A+ +ER+ +ESYFV +Q++ G PSI
Sbjct: 353 EKDNVVRQIERQVQELAFPGSAQDVERLLKKQ-RESYFVDAQPQQKEEGSKGRKGPFPSI 411
Query: 533 L 533
L
Sbjct: 412 L 412
>pdb|1UIJ|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|D Chain D, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|E Chain E, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
pdb|1UIJ|F Chain F, Crystal Structure Of Soybean Beta-Conglycinin Beta
Homotrimer (I122mK124W)
Length = 416
Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 144/421 (34%), Positives = 221/421 (52%), Gaps = 58/421 (13%)
Query: 158 EEENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVP 216
E+ENNP+YF S F+ + +G +R+LQRF+++S L + +YR+ ++ P+T+++P
Sbjct: 5 EDENNPFYFRSSNSFQTLFENQNGRIRLLQRFNKRSPQLENLRDYRIVQFQSKPNTILLP 64
Query: 217 HHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK 276
HH+DA+ +L +L G+ ++TLV+++ R+S+N+ GD +PAGTTYYL N + L +
Sbjct: 65 HHADADFLLFVLSGRAILTLVNNDDRDSYNLHPGDAQRIPAGTTYYLVNPHDHQNLKMIW 124
Query: 277 LLQPVNTPGQF-----RVQQRQQ------------------------------------- 294
L PVN PG++ Q QQ
Sbjct: 125 LAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILETSFHSEFEEINRVLFGEEEEQRQQE 184
Query: 295 GTIKRASQEQLKALXXXXXXXX-XXXXXXTAPFNLLSRKPIYNNNFGRFFEATPKDYQQL 353
G I S+EQ++ L PFNL SR PIY+NNFG+FFE TP+ QL
Sbjct: 185 GVIVELSKEQIRQLSRRAKSSSRKTISSEDEPFNLRSRNPIYSNNFGKFFEITPEKNPQL 244
Query: 354 QEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLXXXXXXXXXXXXXXX 413
+++D ++ V+IN+G +++PH+NSKA I+++ EG E+ G
Sbjct: 245 RDLDIFLSSVDINEGALLLPHFNSKAIVILVINEGDANIELVG----------IKEQQQK 294
Query: 414 XXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG 473
+Q+ A LS VF+IP +P + A+ N L F +NA NNQRNFLAG
Sbjct: 295 QKQEEEPLEVQRYRAELSEDDVFVIPAAYPFVVNATSNLNFL--AFGINAENNQRNFLAG 352
Query: 474 -KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSI 532
K N++ Q+ER+ E+AF A+ +ER+ +ESYFV +Q++ G PSI
Sbjct: 353 EKDNVVRQIERQVQELAFPGSAQDVERLLKKQ-RESYFVDAQPQQKEEGSKGRKGPFPSI 411
Query: 533 L 533
L
Sbjct: 412 L 412
>pdb|1UIK|A Chain A, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|B Chain B, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
pdb|1UIK|C Chain C, Crystal Structure Of Soybean Beta-Conglycinin Alpha Prime
Homotrimer
Length = 418
Score = 235 bits (600), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 138/421 (32%), Positives = 223/421 (52%), Gaps = 62/421 (14%)
Query: 162 NPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDA 221
NP++F+S+RF+ ++ GH+RVLQRF+++S L+ + +YR+ + P+TL++PHH+DA
Sbjct: 7 NPFHFNSKRFQTLFKNQYGHVRVLQRFNKRSQQLQNLRDYRILEFNSKPNTLLLPHHADA 66
Query: 222 ETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPV 281
+ ++V+L G ++TLV+++ R+S+N++ GD + VPAGTTYY+ N DN + L + L PV
Sbjct: 67 DYLIVILNGTAILTLVNNDDRDSYNLQSGDALRVPAGTTYYVVNPDNDENLRMITLAIPV 126
Query: 282 NTPGQF----------------------------------------RVQQRQQG------ 295
N PG+F R + +QQG
Sbjct: 127 NKPGRFESFFLSSTQAQQSYLQGFSKNILEASYDTKFEEINKVLFGREEGQQQGEERLQE 186
Query: 296 -TIKRASQEQLKALXX-XXXXXXXXXXXXTAPFNLLSRKPIYNNNFGRFFEATPKDYQQL 353
I S++Q++ L PFNL SR PIY+N G+ FE TP+ QL
Sbjct: 187 SVIVEISKKQIRELSKHAKSSSRKTISSEDKPFNLRSRDPIYSNKLGKLFEITPEKNPQL 246
Query: 354 QEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLXXXXXXXXXXXXXXX 413
+++D ++ V++N+G + +PH+NSKA ++++ EG E+ G
Sbjct: 247 RDLDVFLSVVDMNEGALFLPHFNSKAIVVLVINEGEANIELVG----------IKEQQQR 296
Query: 414 XXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG 473
++K A LS +F+IP G+P+ + A+ + L F +NA NNQRNFLAG
Sbjct: 297 QQQEEQPLEVRKYRAELSEQDIFVIPAGYPVVVNATSD--LNFFAFGINAENNQRNFLAG 354
Query: 474 -KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAGSGKSLPSI 532
K N+++Q+ + E+AF A+ IE + + ESYFV +Q++ G L SI
Sbjct: 355 SKDNVISQIPSQVQELAFPGSAKDIENLIKSQ-SESYFVDAQPQQKEEGNKGRKGPLSSI 413
Query: 533 L 533
L
Sbjct: 414 L 414
>pdb|2CAU|A Chain A, Canavalin From Jack Bean
pdb|2CAV|A Chain A, Canavalin From Jack Bean
Length = 445
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/400 (30%), Positives = 204/400 (51%), Gaps = 55/400 (13%)
Query: 153 QGSEEEEENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPST 212
+ E +NNPY F S +F ++ G +R+LQRF++ + L + +YR+ + P+T
Sbjct: 38 ESEESRAQNNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNT 97
Query: 213 LVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRL 272
L++PHHSD++ ++++L+G+ ++ LV+ + R+++ ++ GD I + AGT +YL N DN L
Sbjct: 98 LLLPHHSDSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNL 157
Query: 273 HVAKLLQPVNTPG-------------------------------------QFRVQQRQQG 295
+ K PG Q +Q+ Q+G
Sbjct: 158 RILKFAITFRRPGTVEDFFLSSTKRLPSYLSAFSKNFLEASYDSPYDEIEQTLLQEEQEG 217
Query: 296 TIKRASQEQLKALXX-XXXXXXXXXXXXTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQ 354
I + ++Q++ + PFNL SR PIY+NN+G+ +E TP+ QL+
Sbjct: 218 VIVKMPKDQIQEISKHAQSSSRKTLSSQDKPFNLRSRDPIYSNNYGKLYEITPEKNSQLR 277
Query: 355 EIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLXXXXXXXXXXXXXXXX 414
++D + +++N+G + VPHYNS+AT I++ EGR E+
Sbjct: 278 DLDILLNCLQMNEGALFVPHYNSRATVILVANEGRAEVEL-------------VGLEQQQ 324
Query: 415 XXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG- 473
L++ +A LS G + +IP P+AL A+ + L VG +NA NN+RNFLAG
Sbjct: 325 QQGLESMQLRRYAATLSEGDIIVIPSSFPVALKAASD--LNMVGIGVNAENNERNFLAGH 382
Query: 474 KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAG 513
K N++ Q+ R+ ++ F +E + N KESYFV G
Sbjct: 383 KENVIRQIPRQVSDLTFPGSGEEVEELL-ENQKESYFVDG 421
>pdb|3S7E|A Chain A, Crystal Structure Of Ara H 1
pdb|3S7E|B Chain B, Crystal Structure Of Ara H 1
pdb|3S7I|A Chain A, Crystal Structure Of Ara H 1
pdb|3S7I|B Chain B, Crystal Structure Of Ara H 1
Length = 418
Score = 185 bits (470), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 129/417 (30%), Positives = 202/417 (48%), Gaps = 67/417 (16%)
Query: 161 NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSD 220
NNP+YF S+RF R + +G +RVLQRF Q+S + + N+R+ +EA P+TLV+P H+D
Sbjct: 4 NNPFYFPSRRFSTRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHAD 63
Query: 221 AETILVLLKGKGVITLVSHERRESFNMEHGDV------------------------ISVP 256
A+ ILV+ +G+ +T+ + R+SFN++ G IS+P
Sbjct: 64 ADNILVIQQGQATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMP 123
Query: 257 AGTT------YYLSNQD-----------------NVDRLHVAKLLQPVNTPGQ------- 286
T + S++D N + + ++L N G+
Sbjct: 124 VNTPGQFEDFFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQR 183
Query: 287 ---FRVQQRQQGTIKRASQEQLKALXXXXXXXXXXXXXX----TAPFNLLSRKPIYNNNF 339
R + +G I + S+E ++ L T P NL +P +NNF
Sbjct: 184 RWSTRSSENNEGVIVKVSKEHVEELTKHAKSVSKKGSEEEGDITNPINLREGEPDLSNNF 243
Query: 340 GRFFEATP-KDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPL 398
G+ FE P K QLQ++D +T VEI +G +M+PH+NSKA IV+V +G G E+
Sbjct: 244 GKLFEVKPDKKNPQLQDLDMMLTCVEIKEGALMLPHFNSKAMVIVVVNKGTGNLELVAVR 303
Query: 399 XXXXXXXXXXXXXXXXXXXXXXX-XLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTV 457
+++ +A L G VFI+P HP+A+ AS LL
Sbjct: 304 KEQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASSELHLL-- 361
Query: 458 GFSLNARNNQRNFLAG-KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAG 513
GF +NA NN R FLAG K N+++Q+E++ ++AF +E++ N KES+FV+
Sbjct: 362 GFGINAENNHRIFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKLI-KNQKESHFVSA 417
>pdb|3SMH|A Chain A, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|B Chain B, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|C Chain C, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|D Chain D, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|E Chain E, Crystal Structure Of Major Peanut Allergen Ara H 1
pdb|3SMH|F Chain F, Crystal Structure Of Major Peanut Allergen Ara H 1
Length = 418
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 128/417 (30%), Positives = 202/417 (48%), Gaps = 67/417 (16%)
Query: 161 NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSD 220
NNP+YF S+RF R + +G +RVLQRF Q+S + + N+R+ +EA P+TLV+P H+D
Sbjct: 3 NNPFYFPSRRFSTRYGNQNGRIRVLQRFDQRSRQFQNLQNHRIVQIEAKPNTLVLPKHAD 62
Query: 221 AETILVLLKGKGVITLVSHERRESFNMEHGDV------------------------ISVP 256
A+ ILV+ +G+ +T+ + R+SFN++ G IS+P
Sbjct: 63 ADNILVIQQGQATVTVANGNNRKSFNLDEGHALRIPSGFISYILNRHDNQNLRVAKISMP 122
Query: 257 AGTT------YYLSNQD-----------------NVDRLHVAKLLQPVNTPGQ------- 286
T + S++D N + + ++L N G+
Sbjct: 123 VNTPGQFEDFFPASSRDQSSYLQGFSRNTLEAAFNAEFNEIRRVLLEENAGGEQEERGQR 182
Query: 287 ---FRVQQRQQGTIKRASQEQLKALXXXXXXXXXXXXXX----TAPFNLLSRKPIYNNNF 339
R + +G I + S+E ++ L T P NL +P +NNF
Sbjct: 183 RWSTRSSENNEGVIVKVSKEHVEELTKHAKSVSKKGSEEEGDITNPINLREGEPDLSNNF 242
Query: 340 GRFFEATP-KDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPL 398
G+ FE P K QLQ++D +T VEI +G +++PH+NSKA IV+V +G G E+
Sbjct: 243 GKLFEVKPDKKNPQLQDLDMMLTXVEIKEGALVLPHFNSKAMVIVVVNKGTGNLELVAVR 302
Query: 399 XXXXXXXXXXXXXXXXXXXXXXX-XLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTV 457
+++ +A L G VFI+P HP+A+ AS LL
Sbjct: 303 KEQQQRGRREEEEDEDEEEEGSNREVRRYTARLKEGDVFIMPAAHPVAINASSELHLL-- 360
Query: 458 GFSLNARNNQRNFLAG-KINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAG 513
GF +NA NN R FLAG K N+++Q+E++ ++AF +E++ N KES+FV+
Sbjct: 361 GFGINAENNHRIFLAGDKDNVIDQIEKQAKDLAFPGSGEQVEKLI-KNQKESHFVSA 416
>pdb|2PHL|A Chain A, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|B Chain B, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|2PHL|C Chain C, The Structure Of Phaseolin At 2.2 Angstroms Resolution:
Implications For A Common Vicilin(Slash)legumin
Structure And The Genetic Engineering Of Seed Storage
Proteins
pdb|1PHS|A Chain A, The Three-Dimensional Structure Of The Seed Storage
Protein Phaseolin At 3 Angstroms Resolution
Length = 397
Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 116/422 (27%), Positives = 180/422 (42%), Gaps = 85/422 (20%)
Query: 156 EEEEENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLV 214
EEE ++NP+YF+S + ++ GH+RVLQRF Q+S L+ +++YRL + P TL+
Sbjct: 6 EEESQDNPFYFNSDNSWNTLFKNQYGHIRVLQRFDQQSKRLQNLEDYRLVEFRSKPETLL 65
Query: 215 VPHHSDAETILVLLKGKGVITLVS-HERRESFNMEHGDVI-----SVPAGTTYYLSNQDN 268
+P +DAE +LV+ G ++ LV +RRE F + + I +PAGT +YL N D
Sbjct: 66 LPQQADAELLLVVRSGSAILVLVKPDDRREYFFLTSDNPIFSDHQKIPAGTIFYLVNPDP 125
Query: 269 VDRLHVAKLLQPVNTPG--------------------------------------QFRVQ 290
+ L + +L PVN P F +
Sbjct: 126 KEDLRIIQLAMPVNNPQIHEFFLSSTEAQQSYLQEFSKHILEASFNSKFEEINRVLFEEE 185
Query: 291 QRQQGTIKRASQEQLKALXXXXXXXXXXXXXXTAPFNLLSRKPIYNNNFGRFFEATPKDY 350
+Q+G I EQ+K L + N FG E T
Sbjct: 186 GQQEGVIVNIDSEQIKELSKHAKSSSRKSLS--------KQDNTIGNEFGNLTERTDNSL 237
Query: 351 QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLXXXXXXXXXXXX 410
L ++ +E+ +G + VPHY SKA I++V EG E+ GP
Sbjct: 238 NVL------ISSIEMEEGALFVPHYYSKAIVILVVNEGEAHVELVGP------------- 278
Query: 411 XXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNF 470
+ A LS VF+IP +P+A+ A+ N GF +NA NN RN
Sbjct: 279 ----KGNKETLEYESYRAELSKDDVFVIPAAYPVAIKATSNVNF--TGFGINANNNNRNL 332
Query: 471 LAGKI-NIMNQVER-----ETMEVAFNVPARLIERVFGTNPKESYFVAGPEEQQQRDEAG 524
LAGK N+++ + R + + + F+ + ++ SYFV QQ++ +
Sbjct: 333 LAGKTDNVISSIGRALDGKDVLGLTFSGSGDEVMKLINKQSG-SYFVDAHHHQQEQQKGR 391
Query: 525 SG 526
G
Sbjct: 392 KG 393
>pdb|2CV6|A Chain A, Crystal Structure Of 8salpha Globulin, The Major Seed
Storage Protein Of Mungbean
Length = 424
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 91/130 (70%), Gaps = 1/130 (0%)
Query: 160 ENNPYYFHSQR-FRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHH 218
+NNP+YF+S R F R+ GH+RVLQRF Q+S ++ ++NYR+ + P+TL++PHH
Sbjct: 13 KNNPFYFNSDRWFHTLFRNQFGHLRVLQRFDQRSKQMQNLENYRVVEFNSKPNTLLLPHH 72
Query: 219 SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL 278
+DA+ +LV+L G+ V+TLV+ + R+S +E G +PAGTT++L N D+ + L + KL
Sbjct: 73 ADADFLLVVLNGRAVLTLVNPDGRDSNILEQGHAQKIPAGTTFFLVNPDDEENLRIIKLA 132
Query: 279 QPVNTPGQFR 288
PVN P +F+
Sbjct: 133 VPVNNPHRFQ 142
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 116/209 (55%), Gaps = 14/209 (6%)
Query: 325 PFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVL 384
PFNL ++KPIY+N GR+FE TP+ QL+++D + V++ +G +++PHYNSKA I++
Sbjct: 228 PFNLRNQKPIYSNKLGRWFEITPEKNPQLRDLDMFIRSVDMKEGSLLLPHYNSKAIVILV 287
Query: 385 VVEGRGRFEMGGPLXXXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPI 444
+ EG+ E+ G +Q+ A LS VFIIP +P+
Sbjct: 288 INEGKANIELVG----------QREQQKQQEEQEESWEVQRYRAELSEDDVFIIPATYPV 337
Query: 445 ALVASPNEKLLTVGFSLNARNNQRNFLAG-KINIMNQVERETMEVAFNVPARLIERVFGT 503
A+ A+ N L F +NA NNQRNFLAG K N+++++ E ++V F ++++
Sbjct: 338 AINATSN--LNFFAFGINAENNQRNFLAGEKDNVISEIPTEVLDVTFPASGEKVQKLIKK 395
Query: 504 NPKESYFVAGPEEQQQRDEAGSGKSLPSI 532
ES FV EQQ+R+EA G P +
Sbjct: 396 Q-SESQFVDAQPEQQEREEARKGGKGPFV 423
>pdb|1CAU|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|B Chain B, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|B Chain B, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|D Chain D, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|F Chain F, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 184
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 107/190 (56%), Gaps = 17/190 (8%)
Query: 325 PFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVL 384
PFNL SR PIY+NN+G+ +E TP+ QL+++D + +++N+G + VPHYNS+AT I++
Sbjct: 8 PFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILV 67
Query: 385 VVEGRGRFEMGGPLXXXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPI 444
EGR E+ L++ +A LS G + +IP P+
Sbjct: 68 ANEGRAEVEL-------------VGLEQQQQQGLESMQLRRYAATLSEGDIIVIPSSFPV 114
Query: 445 ALVASPNEKLLTVGFSLNARNNQRNFLAG-KINIMNQVERETMEVAFNVPARLIERVFGT 503
AL A+ + L VG +NA NN+RNFLAG K N++ Q+ R+ ++ F +E +
Sbjct: 115 ALKAASD--LNMVGIGVNAENNERNFLAGHKENVIRQIPRQVSDLTFPGSGEEVEELL-E 171
Query: 504 NPKESYFVAG 513
N KESYFV G
Sbjct: 172 NQKESYFVDG 181
>pdb|1CAU|A Chain A, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAV|A Chain A, The Three-Dimensional Structure Of Canavalin From Jack
Bean (Canavalia Ensiformis)
pdb|1CAW|A Chain A, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|A Chain A, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|C Chain C, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
pdb|1CAX|E Chain E, Determination Of Three Crystal Structures Of Canavalin By
Molecular Replacement
Length = 181
Score = 102 bits (253), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 80/126 (63%)
Query: 160 ENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHS 219
+NNPY F S +F ++ G +R+LQRF++ + L + +YR+ + P+TL++PHHS
Sbjct: 2 QNNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHS 61
Query: 220 DAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ 279
D++ ++++L+G+ ++ LV+ + R+++ ++ GD I + AGT +YL N DN L + K
Sbjct: 62 DSDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAI 121
Query: 280 PVNTPG 285
PG
Sbjct: 122 TFRRPG 127
>pdb|1DGR|A Chain A, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|B Chain B, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|C Chain C, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGW|A Chain A, Structure Of The Rhombohedral Crystal Of Canavalin From
Jack Bean
Length = 178
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 79/125 (63%)
Query: 161 NNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSD 220
NNPY F S +F ++ G +R+LQRF++ + L + +YR+ + P+TL++PHHSD
Sbjct: 1 NNPYLFRSNKFLTLFKNQHGSLRLLQRFNEDTEKLENLRDYRVLEYCSKPNTLLLPHHSD 60
Query: 221 AETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP 280
++ ++++L+G+ ++ LV+ + R+++ ++ GD I + AGT +YL N DN L + K
Sbjct: 61 SDLLVLVLEGQAILVLVNPDGRDTYKLDQGDAIKIQAGTPFYLINPDNNQNLRILKFAIT 120
Query: 281 VNTPG 285
PG
Sbjct: 121 FRRPG 125
>pdb|1DGR|X Chain X, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|V Chain V, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|N Chain N, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGW|X Chain X, Structure Of The Rhombohedral Crystal Of Canavalin From
Jack Bean
Length = 79
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 52/72 (72%)
Query: 325 PFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVL 384
PFNL SR PIY+NN+G+ +E TP+ QL+++D + +++N+G + VPHYNS+AT I++
Sbjct: 3 PFNLRSRDPIYSNNYGKLYEITPEKNSQLRDLDILLNCLQMNEGALFVPHYNSRATVILV 62
Query: 385 VVEGRGRFEMGG 396
EGR E+ G
Sbjct: 63 ANEGRAEVELVG 74
>pdb|1DGR|Y Chain Y, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|W Chain W, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGR|M Chain M, Refined Crystal Structure Of Canavalin From Jack Bean
pdb|1DGW|Y Chain Y, Structure Of The Rhombohedral Crystal Of Canavalin From
Jack Bean
Length = 93
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 56/92 (60%), Gaps = 4/92 (4%)
Query: 423 LQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAG-KINIMNQV 481
L++ +A LS G + +IP P+AL A+ + L VG +NA NN+RNFLAG K N++ Q+
Sbjct: 3 LRRYAATLSEGDIIVIPSSFPVALKAASD--LNMVGIGVNAENNERNFLAGHKENVIRQI 60
Query: 482 ERETMEVAFNVPARLIERVFGTNPKESYFVAG 513
R+ ++ F +E + N KESYFV G
Sbjct: 61 PRQVSDLTFPGSGEEVEELL-ENQKESYFVDG 91
>pdb|1FXZ|A Chain A, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|B Chain B, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
pdb|1FXZ|C Chain C, Crystal Structure Of Soybean Proglycinin A1ab1b Homotrimer
Length = 476
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 27/194 (13%)
Query: 330 SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGR 389
S IYN G AT D+ L + + + + M VPHYN A +I+ + GR
Sbjct: 310 SSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGR 369
Query: 390 GRFEMGGPLXXXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVAS 449
++ + L G V I+P +A S
Sbjct: 370 ALIQV-----------------------VNCNGERVFDGELQEGRVLIVPQNFVVA-ARS 405
Query: 450 PNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESY 509
++ V F N LAG +++N + E ++ FN+ ++ ++ NP +
Sbjct: 406 QSDNFEYVSFKTN-DTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPFK-- 462
Query: 510 FVAGPEEQQQRDEA 523
F+ P+E Q+R A
Sbjct: 463 FLVPPQESQKRAVA 476
>pdb|1UD1|A Chain A, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|B Chain B, Crystal Structure Of Proglycinin Mutant C88s
pdb|1UD1|C Chain C, Crystal Structure Of Proglycinin Mutant C88s
Length = 476
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 27/194 (13%)
Query: 330 SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGR 389
S IYN G AT D+ L + + + + M VPHYN A +I+ + GR
Sbjct: 310 SSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGR 369
Query: 390 GRFEMGGPLXXXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVAS 449
++ + L G V I+P +A S
Sbjct: 370 ALIQV-----------------------VNCNGERVFDGELQEGRVLIVPQNFVVA-ARS 405
Query: 450 PNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESY 509
++ V F N LAG +++N + E ++ FN+ ++ ++ NP +
Sbjct: 406 QSDNFEYVSFKTN-DTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPFK-- 462
Query: 510 FVAGPEEQQQRDEA 523
F+ P+E Q+R A
Sbjct: 463 FLVPPQESQKRAVA 476
>pdb|1UCX|A Chain A, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|B Chain B, Crystal Structure Of Proglycinin C12g Mutant
pdb|1UCX|C Chain C, Crystal Structure Of Proglycinin C12g Mutant
Length = 476
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 74/194 (38%), Gaps = 27/194 (13%)
Query: 330 SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGR 389
S IYN G AT D+ L + + + + M VPHYN A +I+ + GR
Sbjct: 310 SSPDIYNPQAGSVTTATSLDFPALSWLRLSAEFGSLRKNAMFVPHYNLNANSIIYALNGR 369
Query: 390 GRFEMGGPLXXXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVAS 449
++ + L G V I+P +A S
Sbjct: 370 ALIQV-----------------------VNCNGERVFDGELQEGRVLIVPQNFVVA-ARS 405
Query: 450 PNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESY 509
++ V F N LAG +++N + E ++ FN+ ++ ++ NP +
Sbjct: 406 QSDNFEYVSFKTN-DTPMIGTLAGANSLLNALPEEVIQHTFNLKSQQARQIKNNNPFK-- 462
Query: 510 FVAGPEEQQQRDEA 523
F+ P+E Q+R A
Sbjct: 463 FLVPPQESQKRAVA 476
>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|B Chain B, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|C Chain C, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|D Chain D, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|E Chain E, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|F Chain F, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L
Length = 496
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 63/172 (36%), Gaps = 25/172 (14%)
Query: 334 IYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFE 393
IYN GR T D L+ + + +++ M VPHYN A +I+ ++GR R +
Sbjct: 334 IYNPEAGRIKTVTSLDLPVLRWLKLSAEHGSLHKNAMFVPHYNLNANSIIYALKGRARLQ 393
Query: 394 MGGPLXXXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVASPNEK 453
+ L G +P + +A S +++
Sbjct: 394 V-----------------------VNCNGNTVFDGELEAGRALTVPQNYAVA-AKSLSDR 429
Query: 454 LLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNP 505
V F N R LAG +++N + + + FN+ ++ NP
Sbjct: 430 FSYVAFKTNDRAGIAR-LAGTSSVINNLPLDVVAATFNLQRNEARQLKSNNP 480
>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
Length = 492
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 330 SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGR 389
SR YN GR L++ YV + + G+ PH+N A +++ V G+
Sbjct: 338 SRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGK 397
Query: 390 GRFEM 394
GR +
Sbjct: 398 GRVRV 402
>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin A3b4
Subunit, Its Comparison With Mature Glycinin A3b4
Subunit, Responsible For Hexamer Assembly
Length = 493
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 330 SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGR 389
SR YN GR L++ YV + + G+ PH+N A +++ V G+
Sbjct: 339 SRADFYNPKAGRISTLNSLTLPALRQFGLSAQYVVLYRNGIYSPHWNLNANSVIYVTRGK 398
Query: 390 GRFEM 394
GR +
Sbjct: 399 GRVRV 403
>pdb|3C3V|A Chain A, Crystal Structure Of Peanut Major Allergen Ara H 3
Length = 510
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 76/195 (38%), Gaps = 28/195 (14%)
Query: 330 SRKP-IYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEG 388
+R P IYN G A + L+ + Y + + + VPHYN+ A +I+ + G
Sbjct: 343 NRSPDIYNPQAGSLKTANELNLLILRWLGLSAEYGNLYRNALFVPHYNTNAHSIIYALRG 402
Query: 389 RGRFEMGGPLXXXXXXXXXXXXXXXXXXXXXXXXLQKISANLSPGVVFIIPPGHPIALVA 448
R ++ + L G V ++P +A
Sbjct: 403 RAHVQV-----------------------VDSNGNRVYDEELQEGHVLVVPQNFAVA-GK 438
Query: 449 SPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKES 508
S ++ V F ++R + N LAG+ ++++ + E + ++ +P ++ NP +
Sbjct: 439 SQSDNFEYVAFKTDSRPSIAN-LAGENSVIDNLPEEVVANSYGLPREQARQLKNNNPFK- 496
Query: 509 YFVAGPEEQQQRDEA 523
F P +Q R A
Sbjct: 497 -FFVPPSQQSPRAVA 510
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 239 HERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVA 275
H++ FN GD+I+VP G ++L N + D + V+
Sbjct: 124 HQKVHRFN--EGDLIAVPTGVAFWLYNDHDTDVVAVS 158
>pdb|3QAC|A Chain A, Structure Of Amaranth 11s Proglobulin Seed Storage Protein
From Amaranthus Hypochondriacus L
Length = 465
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 28/65 (43%)
Query: 330 SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGR 389
S+ +Y GR + L+ + + + MM PHYN A I+ V GR
Sbjct: 295 SKADVYTPEAGRLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHYNLNAHNIMYCVRGR 354
Query: 390 GRFEM 394
GR ++
Sbjct: 355 GRIQI 359
>pdb|4G6G|A Chain A, Crystal Structure Of Ndh With Trt
pdb|4G6G|B Chain B, Crystal Structure Of Ndh With Trt
pdb|4G6H|A Chain A, Crystal Structure Of Ndh With Nadh
pdb|4G6H|B Chain B, Crystal Structure Of Ndh With Nadh
pdb|4G73|A Chain A, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G73|B Chain B, Crystal Structure Of Ndh With Nadh And Quinone
pdb|4G74|A Chain A, Crystal Structure Of Ndh With Quinone
pdb|4G74|B Chain B, Crystal Structure Of Ndh With Quinone
Length = 502
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 213 LVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYL 263
++ P HSD +L+L G G I+ + H + +N +S+ + +Y+L
Sbjct: 34 VIDPQHSDKPNVLILGSGWGAISFLKHIDTKKYN------VSIISPRSYFL 78
>pdb|4G9K|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4G9K|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae
pdb|4GAP|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAP|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Nad+
pdb|4GAV|A Chain A, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
pdb|4GAV|B Chain B, Structure Of The Ndi1 Protein From Saccharomyces
Cerevisiae In Complex With Quinone
Length = 471
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 213 LVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYL 263
++ P HSD +L+L G G I+ + H + +N +S+ + +Y+L
Sbjct: 3 VIDPQHSDKPNVLILGSGWGAISFLKHIDTKKYN------VSIISPRSYFL 47
>pdb|3SN5|A Chain A, Crystal Structure Of Human Cyp7a1 In Complex With
Cholest-4-En-3-One
pdb|3SN5|B Chain B, Crystal Structure Of Human Cyp7a1 In Complex With
Cholest-4-En-3-One
pdb|3V8D|A Chain A, Crystal Structure Of Human Cyp7a1 In Complex With
7-Ketocholesterol
pdb|3V8D|B Chain B, Crystal Structure Of Human Cyp7a1 In Complex With
7-Ketocholesterol
Length = 491
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Query: 171 FRYRVRSDSGHMRVL-----QRFSQKSHLLRGIDNYR 202
F YRV ++G++ + +R +QK+H+L +DN++
Sbjct: 157 FCYRVMFEAGYLTIFGRDLTRRDTQKAHILNNLDNFK 193
>pdb|3DAX|A Chain A, Crystal Structure Of Human Cyp7a1
pdb|3DAX|B Chain B, Crystal Structure Of Human Cyp7a1
Length = 491
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 5/37 (13%)
Query: 171 FRYRVRSDSGHMRVL-----QRFSQKSHLLRGIDNYR 202
F YRV ++G++ + +R +QK+H+L +DN++
Sbjct: 157 FCYRVMFEAGYLTIFGRDLTRRDTQKAHILNNLDNFK 193
>pdb|3ETN|A Chain A, Crystal Structure Of Putative Phosphosugar Isomerase
Involved In Capsule Formation (Yp_209877.1) From
Bacteroides Fragilis Nctc 9343 At 1.70 A Resolution
pdb|3ETN|B Chain B, Crystal Structure Of Putative Phosphosugar Isomerase
Involved In Capsule Formation (Yp_209877.1) From
Bacteroides Fragilis Nctc 9343 At 1.70 A Resolution
pdb|3ETN|C Chain C, Crystal Structure Of Putative Phosphosugar Isomerase
Involved In Capsule Formation (Yp_209877.1) From
Bacteroides Fragilis Nctc 9343 At 1.70 A Resolution
pdb|3ETN|D Chain D, Crystal Structure Of Putative Phosphosugar Isomerase
Involved In Capsule Formation (Yp_209877.1) From
Bacteroides Fragilis Nctc 9343 At 1.70 A Resolution
Length = 220
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 423 LQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVG 458
L +++ NL+PG+ FI+ G+P + +AS ++ L+ G
Sbjct: 125 LTQLAHNLNPGLKFIVITGNPDSPLASESDVCLSTG 160
>pdb|2B8M|A Chain A, Crystal Structure Of A Rmlc-Like Cupin Family Protein With
A Double- Stranded Beta-Helix Fold (Mj0764) From
Methanocaldococcus Jannaschii At 1.70 A Resolution
Length = 117
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 217 HHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSN 265
H+S++ L+++KG+ +TL E +E N + G+++ VP + N
Sbjct: 43 HYSNSYVHLIIIKGEXTLTL---EDQEPHNYKEGNIVYVPFNVKXLIQN 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,744,950
Number of Sequences: 62578
Number of extensions: 561698
Number of successful extensions: 1144
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1031
Number of HSP's gapped (non-prelim): 69
length of query: 539
length of database: 14,973,337
effective HSP length: 104
effective length of query: 435
effective length of database: 8,465,225
effective search space: 3682372875
effective search space used: 3682372875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)