Query 039441
Match_columns 539
No_of_seqs 247 out of 1160
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 09:40:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00212 glutelin; Provisional 100.0 1.2E-63 2.7E-68 537.0 32.0 309 173-515 56-479 (493)
2 TIGR03404 bicupin_oxalic bicup 100.0 1.6E-38 3.5E-43 334.5 29.5 299 164-503 38-362 (367)
3 PF00190 Cupin_1: Cupin; Inte 99.9 3E-26 6.5E-31 211.3 14.7 139 326-497 1-143 (144)
4 PLN00212 glutelin; Provisional 99.9 5.7E-26 1.2E-30 245.6 16.2 178 334-514 57-260 (493)
5 smart00835 Cupin_1 Cupin. This 99.9 3E-22 6.4E-27 185.2 16.8 142 332-497 4-145 (146)
6 PF00190 Cupin_1: Cupin; Inte 99.8 9.9E-20 2.1E-24 168.0 12.9 113 166-282 1-122 (144)
7 TIGR03404 bicupin_oxalic bicup 99.8 2.2E-19 4.7E-24 189.8 17.1 154 324-513 38-192 (367)
8 COG2140 Thermophilic glucose-6 99.7 1E-16 2.2E-21 155.6 11.9 145 322-501 51-197 (209)
9 PF04702 Vicilin_N: Vicilin N 99.5 3.2E-14 6.9E-19 129.6 11.3 82 43-146 51-137 (147)
10 TIGR03214 ura-cupin putative a 99.5 2.2E-12 4.7E-17 130.8 25.5 193 199-462 56-254 (260)
11 PRK11171 hypothetical protein; 99.5 1.7E-12 3.7E-17 131.9 24.0 195 199-462 59-259 (266)
12 smart00835 Cupin_1 Cupin. This 99.4 3.3E-12 7.3E-17 118.1 13.1 101 174-280 6-110 (146)
13 PF04702 Vicilin_N: Vicilin N 99.4 1.2E-12 2.7E-17 119.2 9.4 79 42-137 4-89 (147)
14 TIGR02272 gentisate_1_2 gentis 99.1 5E-09 1.1E-13 109.8 16.9 211 204-459 84-319 (335)
15 PRK04190 glucose-6-phosphate i 99.1 2.4E-09 5.3E-14 104.1 13.5 96 342-462 53-156 (191)
16 COG0662 {ManC} Mannose-6-phosp 99.0 2.5E-09 5.3E-14 97.2 10.7 80 199-283 34-114 (127)
17 PF07883 Cupin_2: Cupin domain 98.9 5.1E-09 1.1E-13 83.9 8.8 69 205-278 2-71 (71)
18 COG2140 Thermophilic glucose-6 98.9 8.1E-09 1.8E-13 100.9 11.6 110 160-280 49-162 (209)
19 PF07883 Cupin_2: Cupin domain 98.9 9.4E-09 2E-13 82.4 9.5 69 362-459 2-70 (71)
20 COG0662 {ManC} Mannose-6-phosp 98.8 3.3E-08 7.1E-13 89.9 10.2 79 356-463 34-112 (127)
21 PRK04190 glucose-6-phosphate i 98.7 7.9E-08 1.7E-12 93.6 11.1 80 200-280 67-156 (191)
22 COG1917 Uncharacterized conser 98.7 1.2E-07 2.5E-12 86.0 10.5 81 351-460 36-116 (131)
23 PRK13290 ectC L-ectoine syntha 98.7 1.1E-07 2.3E-12 86.8 10.1 77 200-281 34-110 (125)
24 COG1917 Uncharacterized conser 98.7 1E-07 2.3E-12 86.3 9.5 78 198-280 40-118 (131)
25 PRK13290 ectC L-ectoine syntha 98.6 4.8E-07 1E-11 82.5 11.5 76 356-461 33-108 (125)
26 TIGR03214 ura-cupin putative a 98.5 6.9E-07 1.5E-11 90.9 10.5 77 200-282 178-255 (260)
27 COG3837 Uncharacterized conser 98.5 5.5E-07 1.2E-11 84.3 8.5 79 197-280 38-120 (161)
28 COG3837 Uncharacterized conser 98.4 8.7E-07 1.9E-11 83.0 8.7 78 357-463 41-121 (161)
29 COG3435 Gentisate 1,2-dioxygen 98.4 2.4E-06 5.3E-11 87.3 12.2 207 209-461 100-333 (351)
30 PRK09943 DNA-binding transcrip 98.4 4.6E-06 1E-10 80.2 13.0 75 201-280 107-182 (185)
31 PF06560 GPI: Glucose-6-phosph 98.3 3.9E-06 8.4E-11 81.2 11.3 92 351-462 43-146 (182)
32 PF01050 MannoseP_isomer: Mann 98.3 9.3E-06 2E-10 76.4 12.7 88 339-462 51-138 (151)
33 TIGR01479 GMP_PMI mannose-1-ph 98.3 4E-06 8.6E-11 92.0 10.5 88 339-462 364-451 (468)
34 PRK15460 cpsB mannose-1-phosph 98.2 5.4E-06 1.2E-10 91.2 11.1 77 199-280 383-460 (478)
35 PF01050 MannoseP_isomer: Mann 98.2 9.9E-06 2.2E-10 76.2 11.4 75 200-279 62-137 (151)
36 TIGR01479 GMP_PMI mannose-1-ph 98.2 7.1E-06 1.5E-10 90.0 10.6 76 199-279 374-450 (468)
37 COG3257 GlxB Uncharacterized p 98.2 0.00021 4.6E-09 70.4 18.8 211 181-461 35-256 (264)
38 PRK09943 DNA-binding transcrip 98.1 1.3E-05 2.8E-10 77.1 10.2 76 357-461 106-181 (185)
39 COG4101 Predicted mannose-6-ph 98.1 1.5E-05 3.2E-10 71.7 9.5 81 357-463 45-125 (142)
40 PRK15460 cpsB mannose-1-phosph 98.1 1.3E-05 2.8E-10 88.2 10.3 89 339-463 373-461 (478)
41 PRK11171 hypothetical protein; 98.1 2E-05 4.3E-10 80.5 10.7 76 201-282 184-260 (266)
42 PF03079 ARD: ARD/ARD' family; 98.0 1.6E-05 3.4E-10 75.4 8.3 67 212-279 83-150 (157)
43 PRK13264 3-hydroxyanthranilate 98.0 1.6E-05 3.4E-10 76.4 7.7 73 209-285 42-114 (177)
44 COG4297 Uncharacterized protei 98.0 1.7E-05 3.6E-10 72.9 6.6 61 372-459 57-117 (163)
45 TIGR03037 anthran_nbaC 3-hydro 97.9 3.9E-05 8.5E-10 72.6 7.9 60 209-268 36-95 (159)
46 PF02041 Auxin_BP: Auxin bindi 97.9 9.6E-05 2.1E-09 68.9 9.8 85 195-279 38-127 (167)
47 PF03079 ARD: ARD/ARD' family; 97.7 0.00019 4E-09 68.1 10.0 70 369-463 83-152 (157)
48 PF11699 CENP-C_C: Mif2/CENP-C 97.7 0.00021 4.5E-09 61.2 8.8 70 201-275 12-82 (85)
49 PF02041 Auxin_BP: Auxin bindi 97.7 0.00074 1.6E-08 63.1 12.6 98 350-472 38-136 (167)
50 PF02311 AraC_binding: AraC-li 97.7 0.00013 2.9E-09 63.8 7.4 67 367-463 12-78 (136)
51 PF06560 GPI: Glucose-6-phosph 97.6 0.00022 4.8E-09 69.1 8.6 79 200-279 49-145 (182)
52 COG4101 Predicted mannose-6-ph 97.6 0.00028 6.1E-09 63.5 8.4 79 197-279 42-123 (142)
53 PF11699 CENP-C_C: Mif2/CENP-C 97.6 0.0003 6.5E-09 60.2 8.2 72 357-457 11-82 (85)
54 PRK15457 ethanolamine utilizat 97.6 0.00036 7.9E-09 69.6 9.7 75 199-282 155-229 (233)
55 COG1791 Uncharacterized conser 97.5 0.00037 7.9E-09 66.4 8.4 67 212-279 86-153 (181)
56 PF02311 AraC_binding: AraC-li 97.5 0.00078 1.7E-08 58.9 9.7 65 210-279 12-76 (136)
57 PF05899 Cupin_3: Protein of u 97.5 0.00031 6.6E-09 58.2 6.3 60 201-265 7-66 (74)
58 PRK13264 3-hydroxyanthranilate 97.4 0.00055 1.2E-08 66.0 8.5 58 366-449 42-99 (177)
59 TIGR02272 gentisate_1_2 gentis 97.4 0.00057 1.2E-08 72.1 9.1 76 357-461 80-155 (335)
60 COG1791 Uncharacterized conser 97.4 0.00095 2.1E-08 63.7 9.6 69 370-463 87-155 (181)
61 TIGR03037 anthran_nbaC 3-hydro 97.4 0.0008 1.7E-08 63.9 9.0 59 367-451 37-95 (159)
62 PF14499 DUF4437: Domain of un 97.3 0.00085 1.8E-08 68.1 8.8 193 197-458 35-242 (251)
63 PRK15457 ethanolamine utilizat 97.3 0.0015 3.4E-08 65.2 10.3 70 355-458 154-223 (233)
64 PF06339 Ectoine_synth: Ectoin 97.2 0.0042 9.2E-08 56.6 10.8 78 355-462 32-109 (126)
65 PF12973 Cupin_7: ChrR Cupin-l 97.1 0.0019 4E-08 55.3 7.8 60 199-266 22-81 (91)
66 PRK15131 mannose-6-phosphate i 97.1 0.015 3.2E-07 62.9 16.3 59 358-448 321-379 (389)
67 PF05899 Cupin_3: Protein of u 97.1 0.002 4.4E-08 53.3 7.6 60 358-448 7-66 (74)
68 PRK10371 DNA-binding transcrip 97.1 0.0014 3E-08 67.9 7.5 65 199-267 24-88 (302)
69 PF05523 FdtA: WxcM-like, C-te 97.0 0.0087 1.9E-07 55.0 11.6 99 335-461 11-111 (131)
70 PRK10296 DNA-binding transcrip 97.0 0.0026 5.6E-08 64.3 8.9 63 200-267 23-85 (278)
71 PF12973 Cupin_7: ChrR Cupin-l 97.0 0.0028 6E-08 54.2 7.6 58 357-448 23-80 (91)
72 PRK10371 DNA-binding transcrip 97.0 0.0016 3.5E-08 67.3 7.2 64 358-451 26-89 (302)
73 TIGR02451 anti_sig_ChrR anti-s 96.9 0.0032 6.8E-08 62.6 8.4 73 357-463 126-198 (215)
74 PRK13500 transcriptional activ 96.9 0.0021 4.5E-08 66.7 7.5 56 366-451 56-111 (312)
75 PF06052 3-HAO: 3-hydroxyanthr 96.9 0.0046 9.9E-08 58.0 8.6 62 207-268 39-100 (151)
76 PRK13501 transcriptional activ 96.9 0.0022 4.7E-08 65.4 7.0 53 369-451 29-81 (290)
77 PF05523 FdtA: WxcM-like, C-te 96.9 0.012 2.6E-07 54.1 11.2 100 174-280 10-112 (131)
78 PF06249 EutQ: Ethanolamine ut 96.8 0.0037 8E-08 59.0 7.6 74 200-282 76-149 (152)
79 PRK10296 DNA-binding transcrip 96.8 0.0055 1.2E-07 61.9 9.5 52 368-449 33-84 (278)
80 TIGR02451 anti_sig_ChrR anti-s 96.8 0.003 6.5E-08 62.7 7.3 72 200-280 126-197 (215)
81 PF04209 HgmA: homogentisate 1 96.8 0.0066 1.4E-07 65.9 10.0 56 218-278 143-198 (424)
82 TIGR00218 manA mannose-6-phosp 96.8 0.028 6E-07 58.5 14.2 60 357-448 234-293 (302)
83 PRK13502 transcriptional activ 96.7 0.0037 8E-08 63.3 7.4 63 359-451 19-81 (282)
84 PF06339 Ectoine_synth: Ectoin 96.6 0.017 3.7E-07 52.7 9.6 88 188-281 21-110 (126)
85 PRK13500 transcriptional activ 96.6 0.0065 1.4E-07 63.0 8.0 55 209-267 56-110 (312)
86 TIGR02297 HpaA 4-hydroxyphenyl 96.5 0.0045 9.7E-08 62.6 6.4 63 367-458 32-94 (287)
87 PRK13503 transcriptional activ 96.5 0.0056 1.2E-07 61.5 6.7 55 366-450 23-77 (278)
88 PRK13501 transcriptional activ 96.5 0.0074 1.6E-07 61.6 7.5 51 213-267 30-80 (290)
89 PF14499 DUF4437: Domain of un 96.4 0.0075 1.6E-07 61.4 6.8 75 356-459 34-108 (251)
90 PRK13503 transcriptional activ 96.4 0.0067 1.4E-07 61.0 6.3 54 210-267 24-77 (278)
91 COG1482 ManA Phosphomannose is 96.2 0.11 2.4E-06 54.5 14.3 59 357-448 241-300 (312)
92 PRK05341 homogentisate 1,2-dio 96.1 0.04 8.6E-07 59.9 10.9 166 218-390 151-351 (438)
93 TIGR01015 hmgA homogentisate 1 96.1 0.051 1.1E-06 59.0 11.5 56 218-278 145-200 (429)
94 PRK13502 transcriptional activ 96.0 0.013 2.8E-07 59.3 6.5 54 210-267 27-80 (282)
95 PF06249 EutQ: Ethanolamine ut 95.9 0.026 5.6E-07 53.4 7.4 61 357-449 76-136 (152)
96 PF13621 Cupin_8: Cupin-like d 95.9 0.055 1.2E-06 53.1 9.9 91 362-453 134-236 (251)
97 TIGR02297 HpaA 4-hydroxyphenyl 95.9 0.018 3.8E-07 58.3 6.5 53 212-268 34-87 (287)
98 COG4297 Uncharacterized protei 95.8 0.014 3.1E-07 54.0 5.1 58 216-276 58-116 (163)
99 TIGR01221 rmlC dTDP-4-dehydror 95.8 0.15 3.2E-06 49.4 12.1 73 366-458 52-129 (176)
100 COG3450 Predicted enzyme of th 95.7 0.02 4.2E-07 51.9 5.5 58 204-266 48-105 (116)
101 PLN02658 homogentisate 1,2-dio 95.6 0.11 2.3E-06 56.6 11.5 57 218-278 144-200 (435)
102 PF00908 dTDP_sugar_isom: dTDP 95.6 0.14 3.1E-06 49.5 11.3 77 365-461 50-132 (176)
103 COG1741 Pirin-related protein 95.6 1.2 2.6E-05 46.1 18.7 208 208-490 51-267 (276)
104 COG4766 EutQ Ethanolamine util 95.6 0.077 1.7E-06 50.0 8.9 75 199-282 98-172 (176)
105 PF04962 KduI: KduI/IolB famil 95.5 0.77 1.7E-05 47.2 16.9 76 197-276 23-104 (261)
106 PLN02288 mannose-6-phosphate i 95.4 0.11 2.4E-06 56.2 10.9 60 357-444 333-392 (394)
107 KOG2107 Uncharacterized conser 95.3 0.02 4.4E-07 54.5 4.4 57 211-267 83-140 (179)
108 PF12852 Cupin_6: Cupin 95.0 0.066 1.4E-06 51.2 6.9 57 209-268 24-80 (186)
109 PF13621 Cupin_8: Cupin-like d 94.9 0.22 4.7E-06 48.8 10.5 59 208-266 138-232 (251)
110 PF08007 Cupin_4: Cupin superf 94.8 0.24 5.1E-06 52.0 10.9 87 359-456 114-205 (319)
111 COG1898 RfbC dTDP-4-dehydrorha 94.6 0.53 1.1E-05 45.6 11.8 77 357-457 48-128 (173)
112 COG3450 Predicted enzyme of th 94.5 0.31 6.8E-06 44.2 9.6 62 357-449 44-105 (116)
113 COG4766 EutQ Ethanolamine util 94.5 0.17 3.7E-06 47.7 8.0 68 357-458 99-166 (176)
114 COG3435 Gentisate 1,2-dioxygen 94.4 0.075 1.6E-06 55.2 6.0 70 360-458 94-163 (351)
115 PRK00924 5-keto-4-deoxyuronate 94.4 5.5 0.00012 41.4 19.4 186 212-457 64-256 (276)
116 KOG2107 Uncharacterized conser 93.8 0.1 2.2E-06 49.9 5.0 75 342-451 67-141 (179)
117 PF05118 Asp_Arg_Hydrox: Aspar 93.1 0.62 1.4E-05 44.2 9.3 74 199-279 78-158 (163)
118 PRK10572 DNA-binding transcrip 93.0 0.29 6.3E-06 49.8 7.4 49 216-268 44-92 (290)
119 PF06052 3-HAO: 3-hydroxyanthr 92.9 0.56 1.2E-05 44.3 8.4 69 363-458 38-106 (151)
120 PF04209 HgmA: homogentisate 1 91.9 1 2.2E-05 49.3 10.1 84 344-460 112-196 (424)
121 PF00908 dTDP_sugar_isom: dTDP 91.8 1 2.3E-05 43.5 9.2 61 208-268 50-123 (176)
122 COG3257 GlxB Uncharacterized p 91.6 1.1 2.4E-05 44.9 9.1 74 358-460 61-135 (264)
123 KOG2757 Mannose-6-phosphate is 91.6 0.7 1.5E-05 49.3 8.2 67 358-455 333-400 (411)
124 PRK15131 mannose-6-phosphate i 91.0 1 2.3E-05 48.8 9.1 61 198-264 318-378 (389)
125 PF08007 Cupin_4: Cupin superf 90.8 1.2 2.6E-05 46.8 9.1 64 209-274 121-205 (319)
126 PF12852 Cupin_6: Cupin 90.6 0.9 2E-05 43.4 7.4 46 379-451 35-80 (186)
127 PF02373 JmjC: JmjC domain, hy 90.0 0.29 6.2E-06 42.5 3.2 25 244-268 82-106 (114)
128 COG1898 RfbC dTDP-4-dehydrorha 90.0 1.8 3.8E-05 42.0 8.7 69 209-279 53-132 (173)
129 PF05726 Pirin_C: Pirin C-term 89.8 0.69 1.5E-05 40.5 5.4 87 206-306 4-92 (104)
130 TIGR01221 rmlC dTDP-4-dehydror 89.7 2.4 5.2E-05 41.1 9.5 70 209-280 52-133 (176)
131 PRK05341 homogentisate 1,2-dio 89.3 2.2 4.7E-05 46.8 9.8 62 357-448 132-194 (438)
132 PF13759 2OG-FeII_Oxy_5: Putat 89.2 2.2 4.9E-05 36.9 8.2 91 363-459 5-100 (101)
133 PLN02288 mannose-6-phosphate i 89.2 0.87 1.9E-05 49.5 6.7 64 197-262 330-393 (394)
134 PF05995 CDO_I: Cysteine dioxy 88.5 5.1 0.00011 38.5 10.8 76 199-274 73-158 (175)
135 KOG2757 Mannose-6-phosphate is 88.2 2 4.2E-05 46.0 8.3 62 203-267 335-396 (411)
136 PF02373 JmjC: JmjC domain, hy 87.8 0.86 1.9E-05 39.5 4.6 27 425-451 80-106 (114)
137 COG3508 HmgA Homogentisate 1,2 87.5 3.1 6.6E-05 44.5 9.1 163 219-389 144-342 (427)
138 COG2850 Uncharacterized conser 87.5 0.71 1.5E-05 49.4 4.5 92 350-456 113-208 (383)
139 PLN02658 homogentisate 1,2-dio 87.5 3.5 7.6E-05 45.2 9.9 71 357-458 125-196 (435)
140 TIGR02466 conserved hypothetic 87.5 2.6 5.5E-05 41.8 8.2 95 360-461 98-198 (201)
141 PF09313 DUF1971: Domain of un 87.0 5.4 0.00012 34.0 8.8 63 209-271 11-78 (82)
142 PF05726 Pirin_C: Pirin C-term 86.9 3.8 8.3E-05 35.8 8.2 68 361-460 2-69 (104)
143 PF05118 Asp_Arg_Hydrox: Aspar 86.0 4.2 9.1E-05 38.6 8.6 78 358-460 80-158 (163)
144 TIGR01015 hmgA homogentisate 1 85.8 4.5 9.8E-05 44.3 9.6 64 357-450 126-190 (429)
145 PF06172 Cupin_5: Cupin superf 84.9 28 0.00061 32.5 13.3 86 357-463 40-128 (139)
146 PRK10572 DNA-binding transcrip 84.3 3.6 7.8E-05 41.8 7.8 45 378-451 48-92 (290)
147 KOG3995 3-hydroxyanthranilate 83.8 1.9 4E-05 43.0 5.1 59 209-267 41-99 (279)
148 KOG3706 Uncharacterized conser 83.6 0.77 1.7E-05 50.5 2.6 79 361-447 319-402 (629)
149 KOG3706 Uncharacterized conser 82.5 0.8 1.7E-05 50.4 2.2 54 213-266 330-404 (629)
150 TIGR00218 manA mannose-6-phosp 81.9 5.5 0.00012 41.5 8.1 61 198-264 232-292 (302)
151 PF06865 DUF1255: Protein of u 81.5 12 0.00027 32.8 8.8 71 358-460 23-93 (94)
152 PRK09685 DNA-binding transcrip 81.3 5.3 0.00012 40.6 7.7 66 198-267 42-113 (302)
153 PF14861 Antimicrobial21: Plan 80.8 1.9 4.1E-05 30.3 2.8 25 106-131 5-29 (31)
154 PF00027 cNMP_binding: Cyclic 80.6 4.7 0.0001 32.4 5.8 48 207-254 3-52 (91)
155 PF11142 DUF2917: Protein of u 80.6 6.3 0.00014 31.8 6.3 56 207-265 3-58 (63)
156 PRK10579 hypothetical protein; 79.5 20 0.00044 31.5 9.4 70 358-459 23-92 (94)
157 PRK09685 DNA-binding transcrip 79.1 5 0.00011 40.9 6.6 66 357-451 44-114 (302)
158 COG3718 IolB Uncharacterized e 78.3 17 0.00037 37.0 9.8 84 195-281 23-112 (270)
159 PRK10579 hypothetical protein; 77.1 8.8 0.00019 33.7 6.5 54 212-267 28-85 (94)
160 PF05995 CDO_I: Cysteine dioxy 76.4 27 0.00059 33.6 10.4 87 357-459 74-161 (175)
161 PF04773 FecR: FecR protein; 76.3 17 0.00037 30.4 8.1 58 206-264 21-80 (98)
162 PF11142 DUF2917: Protein of u 75.3 12 0.00027 30.1 6.5 57 363-448 2-58 (63)
163 PRK09391 fixK transcriptional 72.0 22 0.00049 35.0 9.0 56 203-258 38-95 (230)
164 PF14525 AraC_binding_2: AraC- 70.8 28 0.0006 31.6 8.8 24 428-451 75-98 (172)
165 PF06865 DUF1255: Protein of u 70.0 14 0.00031 32.4 6.1 54 212-267 28-85 (94)
166 PRK13918 CRP/FNR family transc 69.5 12 0.00025 35.6 6.1 50 206-255 9-62 (202)
167 PRK11753 DNA-binding transcrip 69.3 22 0.00048 33.9 8.1 51 205-255 22-74 (211)
168 PRK09391 fixK transcriptional 68.7 35 0.00077 33.6 9.5 80 355-460 33-114 (230)
169 PF13759 2OG-FeII_Oxy_5: Putat 68.4 15 0.00031 31.8 5.9 60 208-267 7-91 (101)
170 PF14525 AraC_binding_2: AraC- 68.2 39 0.00083 30.7 9.1 64 201-268 34-98 (172)
171 COG3508 HmgA Homogentisate 1,2 67.1 32 0.0007 37.0 9.1 68 355-452 122-190 (427)
172 PRK12335 tellurite resistance 66.5 20 0.00044 36.8 7.5 73 367-462 20-94 (287)
173 PRK13918 CRP/FNR family transc 66.0 38 0.00082 32.1 8.9 74 361-459 7-85 (202)
174 cd00038 CAP_ED effector domain 65.5 18 0.0004 29.6 5.9 54 203-256 17-72 (115)
175 smart00100 cNMP Cyclic nucleot 64.8 23 0.00049 29.1 6.3 51 206-256 20-72 (120)
176 PRK11753 DNA-binding transcrip 63.3 56 0.0012 31.1 9.5 76 359-460 19-100 (211)
177 PF00166 Cpn10: Chaperonin 10 61.7 23 0.0005 30.6 5.8 65 365-457 19-84 (93)
178 PRK10402 DNA-binding transcrip 60.8 23 0.00049 34.8 6.5 49 207-255 35-85 (226)
179 COG1482 ManA Phosphomannose is 59.0 10 0.00022 40.1 3.8 22 428-449 160-181 (312)
180 PF00166 Cpn10: Chaperonin 10 58.4 26 0.00056 30.2 5.6 62 210-275 21-84 (93)
181 PF09313 DUF1971: Domain of un 58.3 74 0.0016 27.1 8.2 66 367-456 12-79 (82)
182 PHA02984 hypothetical protein; 57.9 35 0.00077 35.4 7.2 62 220-283 90-153 (286)
183 PF06172 Cupin_5: Cupin superf 56.3 70 0.0015 29.9 8.5 60 208-267 48-115 (139)
184 PF07847 DUF1637: Protein of u 54.8 11 0.00024 37.4 3.0 48 351-398 37-84 (200)
185 PF02678 Pirin: Pirin; InterP 54.7 72 0.0016 28.5 7.9 65 210-277 39-105 (107)
186 PRK12335 tellurite resistance 54.6 45 0.00097 34.2 7.6 68 209-276 19-91 (287)
187 PRK11396 hypothetical protein; 52.8 1.6E+02 0.0034 29.2 10.6 84 335-449 14-98 (191)
188 PF00027 cNMP_binding: Cyclic 52.4 39 0.00085 26.9 5.5 51 364-438 3-53 (91)
189 COG1741 Pirin-related protein 52.2 30 0.00066 36.0 5.9 73 362-462 48-124 (276)
190 PHA02951 Hypothetical protein; 51.6 41 0.00089 35.5 6.6 70 367-462 114-183 (337)
191 COG2850 Uncharacterized conser 50.7 27 0.00058 37.8 5.2 62 204-267 122-203 (383)
192 TIGR02466 conserved hypothetic 50.7 51 0.0011 32.7 6.9 70 208-279 103-197 (201)
193 PF04962 KduI: KduI/IolB famil 50.6 1.2E+02 0.0026 31.3 9.9 93 341-460 13-106 (261)
194 PF02678 Pirin: Pirin; InterP 49.5 81 0.0017 28.2 7.4 62 368-457 39-103 (107)
195 PRK10402 DNA-binding transcrip 49.0 90 0.002 30.5 8.5 75 360-460 31-110 (226)
196 KOG2130 Phosphatidylserine-spe 48.8 23 0.00051 37.5 4.4 29 421-449 258-286 (407)
197 cd00038 CAP_ED effector domain 48.3 1.4E+02 0.003 24.2 8.4 56 360-439 17-72 (115)
198 KOG2131 Uncharacterized conser 48.0 28 0.0006 37.7 4.8 70 197-268 195-293 (427)
199 PRK00364 groES co-chaperonin G 46.1 81 0.0018 27.5 6.7 32 425-457 54-85 (95)
200 COG3718 IolB Uncharacterized e 44.6 1.4E+02 0.0031 30.6 8.9 92 337-451 11-102 (270)
201 PRK00364 groES co-chaperonin G 42.5 1E+02 0.0022 26.9 6.7 62 210-275 22-85 (95)
202 PF05962 HutD: HutD; InterPro 41.6 3.4E+02 0.0073 26.3 11.5 89 175-267 11-99 (184)
203 KOG3995 3-hydroxyanthranilate 41.2 29 0.00062 34.9 3.5 50 374-449 49-98 (279)
204 PRK11161 fumarate/nitrate redu 40.8 1.4E+02 0.0031 29.0 8.5 64 362-449 39-106 (235)
205 PRK04043 tolB translocation pr 40.6 5.2E+02 0.011 28.2 20.7 35 365-399 364-401 (419)
206 PHA02890 hypothetical protein; 39.3 96 0.0021 32.1 6.9 54 221-276 90-145 (278)
207 cd00320 cpn10 Chaperonin 10 Kd 39.2 70 0.0015 27.7 5.3 32 425-457 53-84 (93)
208 KOG3416 Predicted nucleic acid 39.1 51 0.0011 30.6 4.5 64 197-265 13-80 (134)
209 smart00100 cNMP Cyclic nucleot 39.0 1.4E+02 0.003 24.2 7.0 57 360-440 17-73 (120)
210 PRK09392 ftrB transcriptional 37.9 56 0.0012 31.9 5.1 49 205-253 32-81 (236)
211 PRK11161 fumarate/nitrate redu 35.1 86 0.0019 30.5 5.9 48 208-255 42-91 (235)
212 KOG1356 Putative transcription 34.8 14 0.0003 43.6 0.2 20 248-267 804-823 (889)
213 TIGR03697 NtcA_cyano global ni 33.9 84 0.0018 29.3 5.4 36 219-254 9-46 (193)
214 COG3542 Uncharacterized conser 33.8 4.4E+02 0.0095 25.3 12.9 82 358-463 44-130 (162)
215 PLN02868 acyl-CoA thioesterase 32.9 1E+02 0.0022 33.4 6.6 52 204-255 32-84 (413)
216 PHA02890 hypothetical protein; 32.7 1.8E+02 0.0038 30.2 7.6 59 379-463 90-150 (278)
217 PF13640 2OG-FeII_Oxy_3: 2OG-F 32.7 2.6E+02 0.0056 23.3 7.8 20 430-449 66-86 (100)
218 PF13464 DUF4115: Domain of un 32.3 2.8E+02 0.006 22.7 7.6 52 384-459 3-54 (77)
219 COG0664 Crp cAMP-binding prote 31.3 93 0.002 28.9 5.3 53 205-257 25-79 (214)
220 PF05811 DUF842: Eukaryotic pr 31.0 1E+02 0.0022 28.4 5.3 34 43-76 40-92 (131)
221 PRK00924 5-keto-4-deoxyuronate 30.6 3.5E+02 0.0076 28.3 9.6 31 428-458 94-126 (276)
222 PRK09774 fec operon regulator 29.8 3.7E+02 0.008 28.2 9.9 82 174-268 110-191 (319)
223 cd00320 cpn10 Chaperonin 10 Kd 28.3 2.2E+02 0.0047 24.7 6.5 57 210-275 21-84 (93)
224 PLN02868 acyl-CoA thioesterase 28.2 3.3E+02 0.0071 29.5 9.5 55 360-439 31-85 (413)
225 PF01987 AIM24: Mitochondrial 27.8 86 0.0019 30.6 4.5 47 220-266 128-174 (215)
226 TIGR03697 NtcA_cyano global ni 27.8 1.1E+02 0.0024 28.6 5.0 38 379-439 11-48 (193)
227 PF00856 SET: SET domain; Int 27.0 46 0.00099 29.2 2.2 25 230-262 1-25 (162)
228 PRK15186 AraC family transcrip 26.7 1.8E+02 0.004 30.3 6.9 46 220-268 37-82 (291)
229 COG0664 Crp cAMP-binding prote 25.3 2.1E+02 0.0045 26.5 6.5 76 358-459 21-101 (214)
230 PF06719 AraC_N: AraC-type tra 25.2 5.6E+02 0.012 23.8 10.2 57 378-463 22-81 (155)
231 KOG2894 Uncharacterized conser 25.2 1.2E+02 0.0025 31.8 4.9 52 10-74 153-224 (331)
232 COG1339 Transcriptional regula 25.2 96 0.0021 31.0 4.1 69 174-255 139-210 (214)
233 PHA02699 hypothetical protein; 25.1 1.7E+02 0.0036 31.9 6.1 47 378-448 166-212 (466)
234 KOG1417 Homogentisate 1,2-diox 25.0 6.3E+02 0.014 26.9 10.1 80 342-451 119-198 (446)
235 PF04943 Pox_F11: Poxvirus F11 24.9 2.1E+02 0.0045 31.1 6.9 56 367-448 106-161 (366)
236 PHA02984 hypothetical protein; 24.5 3.1E+02 0.0068 28.7 7.8 53 379-457 91-145 (286)
237 PRK09392 ftrB transcriptional 24.5 3.5E+02 0.0076 26.3 8.2 74 360-460 30-108 (236)
238 PRK13616 lipoprotein LpqB; Pro 23.5 6.3E+02 0.014 29.2 10.9 69 330-398 399-478 (591)
239 COG0234 GroS Co-chaperonin Gro 23.5 2.3E+02 0.005 25.1 5.7 64 366-457 21-85 (96)
240 PRK05137 tolB translocation pr 23.0 9.7E+02 0.021 25.8 19.0 40 360-399 326-367 (435)
241 PF10313 DUF2415: Uncharacteri 22.9 1.1E+02 0.0023 23.2 3.1 31 368-398 1-33 (43)
242 PF01987 AIM24: Mitochondrial 22.5 3.6E+02 0.0078 26.2 7.8 47 378-449 128-174 (215)
243 KOG1816 Ubiquitin fusion-degra 22.3 2.8E+02 0.006 29.3 7.0 18 245-262 144-161 (308)
244 PF13734 Inhibitor_I69: Spi pr 22.0 83 0.0018 27.7 2.7 21 255-276 37-57 (96)
245 PF01982 CTP-dep_RFKase: Domai 21.3 68 0.0015 29.5 2.1 59 186-255 58-119 (121)
246 COG3123 Uncharacterized protei 21.2 2.9E+02 0.0062 24.1 5.7 46 219-266 39-84 (94)
247 PRK01029 tolB translocation pr 21.1 8.2E+02 0.018 26.6 10.9 68 332-399 285-360 (428)
248 KOG2131 Uncharacterized conser 20.8 1E+02 0.0023 33.5 3.7 85 362-451 201-293 (427)
No 1
>PLN00212 glutelin; Provisional
Probab=100.00 E-value=1.2e-63 Score=537.01 Aligned_cols=309 Identities=23% Similarity=0.390 Sum_probs=266.8
Q ss_pred eeEecCCceEEEeeccCccccccc--CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceee-----
Q 039441 173 YRVRSDSGHMRVLQRFSQKSHLLR--GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESF----- 245 (539)
Q Consensus 173 ~~v~se~G~i~vl~~f~~~s~~l~--gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~----- 245 (539)
.+|+||||.|+ .||+++++|+ ||+.+|++| +|+||+||||+||++++||++|+|++|+|.|||+++|
T Consensus 56 ~ri~se~G~~E---~~~~~~~q~~caGv~~~R~~i---~p~gL~lP~y~na~~liyV~qG~G~~G~v~pGcpeT~~~~~~ 129 (493)
T PLN00212 56 RKVRSEAGVTE---YFDEKNEQFQCTGVFVIRRVI---EPQGLLLPRYSNTPGLVYIIQGRGSMGLTFPGCPATYQQQFQ 129 (493)
T ss_pred hhhcccCceee---ecCCCChhhcccceEEEEEEe---cCCcccCccccCCCeEEEEEeCeEEEEEEeCCCcchhhhhcc
Confidence 58999999877 5999999999 999999999 9999999999999999999999999999999998875
Q ss_pred ---------------------ecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCC-------Ccee--------
Q 039441 246 ---------------------NMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPG-------QFRV-------- 289 (539)
Q Consensus 246 ---------------------~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg-------~f~~-------- 289 (539)
+|++||||+||||++||+||+| +++|++|+++|+.|..+ .|.+
T Consensus 130 ~~~~~~~~~~~~~~d~hqkv~~lr~GDViaiPaG~~hw~yN~G-d~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~ 208 (493)
T PLN00212 130 QFLTEGQSQSQKFRDEHQKIHQFRQGDVVALPAGVAHWFYNDG-DAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQ 208 (493)
T ss_pred cccccccccccccccccccceEeccCCEEEECCCCeEEEEeCC-CCcEEEEEEEeccccccccCCCcceeeccCCCcccc
Confidence 8999999999999999999999 57899999999876321 2322
Q ss_pred ---------------------------------------cc-ccCccEEEcChhhhhhcCccccc---------------
Q 039441 290 ---------------------------------------QQ-RQQGTIKRASQEQLKALSHHASS--------------- 314 (539)
Q Consensus 290 ---------------------------------------~~-q~~G~Ivrv~~eql~~l~~~~~~--------------- 314 (539)
++ +++|.||+|+.+ ++.+.|....
T Consensus 209 ~~~~~~~~~~~~~nifsGF~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv~~~-l~~~~P~~~~~~e~~~~~~~~~~~~ 287 (493)
T PLN00212 209 QVYGRSIEQHSGQNIFSGFSTELLSEALGINAQVAKRLQSQNDQRGEIIRVKNG-LQLLQPTLTQQQEQAQQQQQRLYQQ 287 (493)
T ss_pred ccccccccccccCchhhcCCHHHHHHHHCCCHHHHHHHhccccCCccEEEECCC-cccCCCchhhhhHHHHhhhhccccc
Confidence 12 257999999765 6655552110
Q ss_pred ---c--C---CCCCCCCc-------ceecC--CCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecC
Q 039441 315 ---R--R---RHGRGSTA-------PFNLL--SRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNS 377 (539)
Q Consensus 315 ---~--~---~~~~~~~~-------~fnl~--~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhp 377 (539)
. . ...++... .+||. +.+|+|++.+|+++++++.+||+|+.++|+|++++|+||||++|||||
T Consensus 288 ~~~~~~~~~~~~~ngleEt~c~~rlr~Ni~~p~~ad~y~~~~G~it~v~~~~~P~L~~L~LSa~rv~L~~gam~~PHwn~ 367 (493)
T PLN00212 288 VQYQQSQQTSGRWNGLDENFCTIKVRLNIENPSRADTYNPRAGRITRLNSQKFPILNLIQMSATRVNLYQNALLSPFWNV 367 (493)
T ss_pred chhhhccccccCCCCccccccccccccccCCccccCccCCCceEEEEechhhCccccccCeeEEEEEEcCCcccCCeecC
Confidence 0 0 00122222 34553 678999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEE
Q 039441 378 KATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTV 457 (539)
Q Consensus 378 nA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v 457 (539)
||++|+||++|+|+|+||++++. ++++.+|++|||||||+||+|++.|. +++|.|+
T Consensus 368 nA~eI~yV~rG~g~vqvV~~~g~-----------------------~vf~~~L~~GdvfVVPqg~~v~~~A~-~egfe~v 423 (493)
T PLN00212 368 NAHSVVYITQGRARVQVVSNNGK-----------------------TVFNGVLRPGQLLIIPQHYAVLKKAE-REGCQYI 423 (493)
T ss_pred CCCEEEEEeecceEEEEEcCCCC-----------------------EEEEEEEcCCCEEEECCCCeEEEeec-CCceEEE
Confidence 99999999999999999999863 58999999999999999999999997 6789999
Q ss_pred EEeecCCCCccccccccchhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecCCh
Q 039441 458 GFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGPE 515 (539)
Q Consensus 458 ~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~p~ 515 (539)
+|.+++ ++..++|||++|+|++||.+||++||+++.++|++|+.++.++ +|+.+|.
T Consensus 424 ~F~tna-~~~~s~laG~~Sv~~alp~eVla~Af~is~eea~~lk~n~~~e-~~~~~p~ 479 (493)
T PLN00212 424 AFKTNA-NAMVSHIAGKNSIFRALPVDVIANAYRISREEARRLKNNRGDE-LGAFTPR 479 (493)
T ss_pred EeecCC-CccccccccHHHHHHhCCHHHHHHHcCCCHHHHHHHHhcccCc-eeecCCC
Confidence 999999 7789999999999999999999999999999999999998776 5555553
No 2
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=100.00 E-value=1.6e-38 Score=334.48 Aligned_cols=299 Identities=15% Similarity=0.173 Sum_probs=227.7
Q ss_pred ceeecCccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCc-
Q 039441 164 YYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERR- 242 (539)
Q Consensus 164 y~f~~~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~- 242 (539)
|-|+..+-+ . ..+|.++. -+ ...|+++..+-.+.|++.|++++.||||.+.+|+||++|++++++++.+++
T Consensus 38 ~~~~~~~~~--~-~~gG~~~~---~~--~~~lP~l~~ls~~~~~l~pG~~~~~HwH~~~E~~yVl~G~~~v~~~d~~g~~ 109 (367)
T TIGR03404 38 WSFSDSHNR--L-ENGGWARE---VT--VRDLPISTAIAGVNMRLEPGAIRELHWHKEAEWAYVLYGSCRITAVDENGRN 109 (367)
T ss_pred eeeccccCc--c-ccCceEEE---eC--hhhccCcccccceEEEEcCCCCCCcccCCCceEEEEEeeEEEEEEEcCCCcE
Confidence 666665522 2 37887775 22 233454444555566669999999999999999999999999999987544
Q ss_pred eeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCC--CCCCceecc----ccCccEE---EcChhhhhhcCccc-
Q 039441 243 ESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVN--TPGQFRVQQ----RQQGTIK---RASQEQLKALSHHA- 312 (539)
Q Consensus 243 ~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n--~pg~f~~~~----q~~G~Iv---rv~~eql~~l~~~~- 312 (539)
.++.|++||+|+||+|.+|+++|.+ +.++++.+|++.+ .++++.+.. .+..++. .++.+.++.|+...
T Consensus 110 ~~~~L~~GD~~~fP~g~~H~~~n~~--~~~~~l~vf~~~~f~~~~~~~~~~~l~~~p~~Vla~~f~l~~~~~~~l~~~~~ 187 (367)
T TIGR03404 110 YIDDVGAGDLWYFPPGIPHSLQGLD--EGCEFLLVFDDGNFSEDGTFLVTDWLAHTPKDVLAKNFGVPESAFDNLPLKEL 187 (367)
T ss_pred EEeEECCCCEEEECCCCeEEEEECC--CCeEEEEEeCCcccCCcceeeHHHHHHhCCHHHHHHHhCCCHHHHHhccccCc
Confidence 4568999999999999999999995 4577888888764 345444411 1222111 12222222222110
Q ss_pred -----------ccc----CCCCCCCCcceecCCCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecC
Q 039441 313 -----------SSR----RRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNS 377 (539)
Q Consensus 313 -----------~~~----~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhp 377 (539)
.+. +.+.....+.|++.+..| +...+|++..+++.+||+++. ++++.++|.||+|+.||||+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~gG~~~~~~~~~~p~~~~--~s~~~~~l~PG~~~~~H~H~ 264 (367)
T TIGR03404 188 YIFPGTVPGPLDQEAVTGPAGEVPGPFTYHLSEQKP-KQVPGGTVRIADSTNFPVSKT--IAAAIVTVEPGAMRELHWHP 264 (367)
T ss_pred eEEecCCCCccccccCcCCCCCCCccEEEEhhhCCc-eecCCceEEEEChhhccCcce--EEEEEEEECCCCccCCeeCc
Confidence 000 112222345668888888 677899999999999999886 99999999999999999999
Q ss_pred CCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEE
Q 039441 378 KATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTV 457 (539)
Q Consensus 378 nA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v 457 (539)
+++||.||++|+++++|+++++ +..+..|++||+++||+|++|++.|+|+++++||
T Consensus 265 ~~~E~~yvl~G~~~~~v~d~~g------------------------~~~~~~l~~GD~~~iP~g~~H~i~N~G~e~l~fL 320 (367)
T TIGR03404 265 NADEWQYFIQGQARMTVFAAGG------------------------NARTFDYQAGDVGYVPRNMGHYVENTGDETLVFL 320 (367)
T ss_pred CCCeEEEEEEEEEEEEEEecCC------------------------cEEEEEECCCCEEEECCCCeEEEEECCCCCEEEE
Confidence 9999999999999999999876 2345789999999999999999999999999999
Q ss_pred EEeecCCCCccccccccchhcccCcHHHHHHHcCCCHHHHHHhhcC
Q 039441 458 GFSLNARNNQRNFLAGKINIMNQVERETMEVAFNVPARLIERVFGT 503 (539)
Q Consensus 458 ~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF~vs~e~v~kL~~~ 503 (539)
+++.++.. ....| ++||+.+|++||+++|+++.+.+++|++.
T Consensus 321 ~if~s~~~-~~i~l---~~~l~~~p~~vl~~~~~~~~~~~~~l~~~ 362 (367)
T TIGR03404 321 EVFKADRF-ADVSL---NQWLALTPPQLVAAHLNLDDEVIDSLKKE 362 (367)
T ss_pred EEECCCCC-ceeEH---HHHHhhCCHHHHHHHhCcCHHHHHhcccc
Confidence 98877633 33334 68999999999999999999999999865
No 3
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.94 E-value=3e-26 Score=211.32 Aligned_cols=139 Identities=35% Similarity=0.560 Sum_probs=114.7
Q ss_pred eecCCCCCcccCCCceEEEeCCccccccc-ccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccch
Q 039441 326 FNLLSRKPIYNNNFGRFFEATPKDYQQLQ-EIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQ 404 (539)
Q Consensus 326 fnl~~~~p~~sn~~G~i~~~~~~~fP~L~-~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~ 404 (539)
|||.+..|.+++++|+++.+++.+||+|. ..++++.++.|+||||++|||| +|++|+||++|+|+++||+++++..
T Consensus 1 fn~~~~~~~~~~~~G~~~~~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h-~a~~i~~V~~G~~~~~~v~~~~~~~-- 77 (144)
T PF00190_consen 1 FNLREPRPRVSNEGGRIREADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYH-NADEIVYVIEGRGRVGVVGPGGPQE-- 77 (144)
T ss_dssp EETCSSSEEEEETTEEEEEESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEE-SSEEEEEEEESEEEEEEEETTCSSS--
T ss_pred CCCCCCCCcccCCCEEEEEEChhhCcceecccceEEEeeehhcCCccceeEe-eeeEEeeeeccceEEEEEecCCccc--
Confidence 79999999999999999999999999544 4466777788899999999999 9999999999999999999987310
Q ss_pred hhhhhhhHHHHHHhhhcceeeEEe--eeCCCcEEEeCCCCeEEEEcCC-CCcEEEEEEeecCCCCccccccccchhcccC
Q 039441 405 ESQREQQEEEEEEESSRELQKISA--NLSPGVVFIIPPGHPIALVASP-NEKLLTVGFSLNARNNQRNFLAGKINIMNQV 481 (539)
Q Consensus 405 ~~~~g~~~~~~~e~~~~~y~~~~~--~L~~GDV~vVPaG~~h~i~n~g-ne~l~~v~F~~na~n~~~~fLAG~~svL~~~ 481 (539)
+.+.... +|++||||+||+|++||++|++ ++.+.+++|.+++..+. |
T Consensus 78 -----------------~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~~~~~~~~~f~~~~~~~~-------------l 127 (144)
T PF00190_consen 78 -----------------EFRDFSQKVRLKAGDVFVVPAGHPHWIINDGDDEALVLIIFDTNNPPNQ-------------L 127 (144)
T ss_dssp -----------------EEEEEEEEEEEETTEEEEE-TT-EEEEEECSSSSEEEEEEEEESSTTGE-------------S
T ss_pred -----------------cceeeeceeeeecccceeeccceeEEEEcCCCCCCEEEEEEECCCCccc-------------C
Confidence 0023334 4999999999999999999998 56677778887762222 8
Q ss_pred cHHHHHHHcCCCHHHH
Q 039441 482 ERETMEVAFNVPARLI 497 (539)
Q Consensus 482 p~evLa~AF~vs~e~v 497 (539)
|++|++++|+++.+++
T Consensus 128 ~~~v~~~~F~~~~~~~ 143 (144)
T PF00190_consen 128 PPEVLAKAFFLSGEEV 143 (144)
T ss_dssp SHHHHHHHEESSHHHH
T ss_pred CcHHHHHhcCCCcCcC
Confidence 9999999999999875
No 4
>PLN00212 glutelin; Provisional
Probab=99.93 E-value=5.7e-26 Score=245.64 Aligned_cols=178 Identities=19% Similarity=0.260 Sum_probs=140.5
Q ss_pred cccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhh--hhh
Q 039441 334 IYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQR--EQQ 411 (539)
Q Consensus 334 ~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~--g~~ 411 (539)
.+...+|.+..|| .+.+.|+|+|+++++++|+|+||++|||| +|++|+||++|+|.+++|.|+|+.-.+...+ +.+
T Consensus 57 ri~se~G~~E~~~-~~~~q~~caGv~~~R~~i~p~gL~lP~y~-na~~liyV~qG~G~~G~v~pGcpeT~~~~~~~~~~~ 134 (493)
T PLN00212 57 KVRSEAGVTEYFD-EKNEQFQCTGVFVIRRVIEPQGLLLPRYS-NTPGLVYIIQGRGSMGLTFPGCPATYQQQFQQFLTE 134 (493)
T ss_pred hhcccCceeeecC-CCChhhcccceEEEEEEecCCcccCcccc-CCCeEEEEEeCeEEEEEEeCCCcchhhhhccccccc
Confidence 4567899877777 67899999999999999999999999998 9999999999999999999998861110000 000
Q ss_pred HHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEe-ecCC------CCcccccccc----------
Q 039441 412 EEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFS-LNAR------NNQRNFLAGK---------- 474 (539)
Q Consensus 412 ~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~-~na~------n~~~~fLAG~---------- 474 (539)
.+++.....++++++ .+|++||||+||+|++||++|+||+++++|++. ++.. +...+||||+
T Consensus 135 ~~~~~~~~~d~hqkv-~~lr~GDViaiPaG~~hw~yN~Gd~~~v~v~~~d~~n~~Nqld~~~r~F~LaG~~~~~~~~~~~ 213 (493)
T PLN00212 135 GQSQSQKFRDEHQKI-HQFRQGDVVALPAGVAHWFYNDGDAPVVALYVYDINNNANQLEPRQREFLLAGNNNRQQQVYGR 213 (493)
T ss_pred ccccccccccccccc-eEeccCCEEEECCCCeEEEEeCCCCcEEEEEEEeccccccccCCCcceeeccCCCccccccccc
Confidence 011122234566776 789999999999999999999999998887644 4331 2347899996
Q ss_pred -------chhcccCcHHHHHHHcCCCHHHHHHhhcCCCCceeEecCC
Q 039441 475 -------INIMNQVERETMEVAFNVPARLIERVFGTNPKESYFVAGP 514 (539)
Q Consensus 475 -------~svL~~~p~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~p 514 (539)
.|||++|++++|+.||||+.+++++|+..+++.+.||...
T Consensus 214 ~~~~~~~~nifsGF~~e~La~Afnv~~e~~~klq~~~d~rG~IVrv~ 260 (493)
T PLN00212 214 SIEQHSGQNIFSGFSTELLSEALGINAQVAKRLQSQNDQRGEIIRVK 260 (493)
T ss_pred cccccccCchhhcCCHHHHHHHHCCCHHHHHHHhccccCCccEEEEC
Confidence 3599999999999999999999999998776545777664
No 5
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.89 E-value=3e-22 Score=185.16 Aligned_cols=142 Identities=35% Similarity=0.622 Sum_probs=130.3
Q ss_pred CCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhh
Q 039441 332 KPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQ 411 (539)
Q Consensus 332 ~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~ 411 (539)
.+.|++++|++..+++.++|.+++.++.+..++|.||++..||||+++.+++||++|++.+.+.+..+.
T Consensus 4 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~----------- 72 (146)
T smart00835 4 RPDFSNEGGRLREADPTNFPALNGLGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGN----------- 72 (146)
T ss_pred cccccCCCceEEEeCchhCcccccCceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCC-----------
Confidence 346899999999999999999999999999999999999999999999999999999999999987542
Q ss_pred HHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhcccCcHHHHHHHcC
Q 039441 412 EEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAFN 491 (539)
Q Consensus 412 ~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF~ 491 (539)
.+....|++||+++||+|.+|++.|.+++++.+++|.+.+ .+.+++++|..+||.+|++++++.+|+
T Consensus 73 ------------~~~~~~l~~GD~~~ip~g~~H~~~n~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (146)
T smart00835 73 ------------KVYDARLREGDVFVVPQGHPHFQVNSGDENLEFVAFNTND-PNRRFFLAGRNSVLRGLPPEVLAAAFG 139 (146)
T ss_pred ------------eEEEEEecCCCEEEECCCCEEEEEcCCCCCEEEEEEecCC-CCceeEeecccchhhcCCHHHHHHHhC
Confidence 3567899999999999999999999999999999987765 677888999899999999999999999
Q ss_pred CCHHHH
Q 039441 492 VPARLI 497 (539)
Q Consensus 492 vs~e~v 497 (539)
++.+++
T Consensus 140 ~~~~~~ 145 (146)
T smart00835 140 VSAEEV 145 (146)
T ss_pred cChHHc
Confidence 999765
No 6
>PF00190 Cupin_1: Cupin; InterPro: IPR006045 This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant. ; GO: 0045735 nutrient reservoir activity; PDB: 2E9Q_A 2EVX_A 1OD5_A 1UCX_A 1UD1_C 1FXZ_C 3KGL_C 3KSC_D 1UIJ_F 1IPK_B ....
Probab=99.82 E-value=9.9e-20 Score=167.96 Aligned_cols=113 Identities=26% Similarity=0.447 Sum_probs=91.6
Q ss_pred eecCccceeEecCCceEEEeeccCccc-ccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCc--
Q 039441 166 FHSQRFRYRVRSDSGHMRVLQRFSQKS-HLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERR-- 242 (539)
Q Consensus 166 f~~~~f~~~v~se~G~i~vl~~f~~~s-~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~-- 242 (539)
|...+..+++++++|.++. |+..+ |.+.++..+.+.++.|+|+++++|||++|++|+||++|+|++++|.+++.
T Consensus 1 fn~~~~~~~~~~~~G~~~~---~~~~~~p~~~~~~~~~~~~~~i~pg~~~~Ph~h~a~~i~~V~~G~~~~~~v~~~~~~~ 77 (144)
T PF00190_consen 1 FNLREPRPRVSNEGGRIRE---ADSEDFPILLGLNGVAVRRVLIEPGGLRAPHYHNADEIVYVIEGRGRVGVVGPGGPQE 77 (144)
T ss_dssp EETCSSSEEEEETTEEEEE---ESTTTSHCHHHHTTEEEEEEEEETTEEEEEEEESSEEEEEEEESEEEEEEEETTCSSS
T ss_pred CCCCCCCCcccCCCEEEEE---EChhhCcceecccceEEEeeehhcCCccceeEeeeeEEeeeeccceEEEEEecCCccc
Confidence 4556677899999999997 66555 55667777888888889999999999999999999999999999999873
Q ss_pred ----eeee--cCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCC
Q 039441 243 ----ESFN--MEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVN 282 (539)
Q Consensus 243 ----~~~~--v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n 282 (539)
...+ |++|||++||+|++|||+|+++ .+..++.+|++.+
T Consensus 78 ~~~~~~~~v~l~~Gdv~~vP~G~~h~~~n~~~-~~~~~~~~f~~~~ 122 (144)
T PF00190_consen 78 EFRDFSQKVRLKAGDVFVVPAGHPHWIINDGD-DEALVLIIFDTNN 122 (144)
T ss_dssp EEEEEEEEEEEETTEEEEE-TT-EEEEEECSS-SSEEEEEEEEESS
T ss_pred cceeeeceeeeecccceeeccceeEEEEcCCC-CCCEEEEEEECCC
Confidence 3445 9999999999999999999984 4455556665544
No 7
>TIGR03404 bicupin_oxalic bicupin, oxalate decarboxylase family. Members of this protein family are defined as bicupins as they have two copies of the cupin domain (pfam00190). Two different known activities for members of this family are oxalate decarboxylase (EC 4.1.1.2) and oxalate oxidase (EC 1.2.3.4), although the latter activity has more often been found in distantly related monocupin (germin) proteins.
Probab=99.82 E-value=2.2e-19 Score=189.76 Aligned_cols=154 Identities=17% Similarity=0.240 Sum_probs=124.7
Q ss_pred cceecCCCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccc
Q 039441 324 APFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWS 403 (539)
Q Consensus 324 ~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s 403 (539)
.+|++..++. ..+|++++++..+||+|+. |++.+++|.|||++.|||| .+.||+||++|++++++++.++
T Consensus 38 ~~~~~~~~~~---~~gG~~~~~~~~~lP~l~~--ls~~~~~l~pG~~~~~HwH-~~~E~~yVl~G~~~v~~~d~~g---- 107 (367)
T TIGR03404 38 WSFSDSHNRL---ENGGWAREVTVRDLPISTA--IAGVNMRLEPGAIRELHWH-KEAEWAYVLYGSCRITAVDENG---- 107 (367)
T ss_pred eeeccccCcc---ccCceEEEeChhhccCccc--ccceEEEEcCCCCCCcccC-CCceEEEEEeeEEEEEEEcCCC----
Confidence 4555544443 2599999999999999987 8999999999999999999 5779999999999999999865
Q ss_pred hhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccc-cccccchhcccCc
Q 039441 404 QESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRN-FLAGKINIMNQVE 482 (539)
Q Consensus 404 ~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~-fLAG~~svL~~~p 482 (539)
+.+...|++||+++||+|.+|++.|. ++++.++.++..+..+... ++. .++|+.+|
T Consensus 108 --------------------~~~~~~L~~GD~~~fP~g~~H~~~n~-~~~~~~l~vf~~~~f~~~~~~~~--~~~l~~~p 164 (367)
T TIGR03404 108 --------------------RNYIDDVGAGDLWYFPPGIPHSLQGL-DEGCEFLLVFDDGNFSEDGTFLV--TDWLAHTP 164 (367)
T ss_pred --------------------cEEEeEECCCCEEEECCCCeEEEEEC-CCCeEEEEEeCCcccCCcceeeH--HHHHHhCC
Confidence 46667899999999999999999998 4567777655443222222 222 56888899
Q ss_pred HHHHHHHcCCCHHHHHHhhcCCCCceeEecC
Q 039441 483 RETMEVAFNVPARLIERVFGTNPKESYFVAG 513 (539)
Q Consensus 483 ~evLa~AF~vs~e~v~kL~~~q~e~~~fv~~ 513 (539)
.+||+++|+++.+++++|+.. +. +|+++
T Consensus 165 ~~Vla~~f~l~~~~~~~l~~~--~~-~~~~~ 192 (367)
T TIGR03404 165 KDVLAKNFGVPESAFDNLPLK--EL-YIFPG 192 (367)
T ss_pred HHHHHHHhCCCHHHHHhcccc--Cc-eEEec
Confidence 999999999999999999864 34 77755
No 8
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=99.70 E-value=1e-16 Score=155.64 Aligned_cols=145 Identities=19% Similarity=0.214 Sum_probs=122.1
Q ss_pred CCcceecCCCCCcccCCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCE--EEEEEeceEEEEEecCCC
Q 039441 322 STAPFNLLSRKPIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATT--IVLVVEGRGRFEMGGPLS 399 (539)
Q Consensus 322 ~~~~fnl~~~~p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~e--i~yV~~G~g~v~vV~p~g 399 (539)
....|.+....|..+ +|.+.......+|.. +.+.+.++||+|.+.||||+|++ |.||++|+|.+.+..++|
T Consensus 51 ~~~~yel~~~~~~~~--~g~L~~~~t~~~pGs-----~g~e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v~~~~G 123 (209)
T COG2140 51 DDFVYELLESEPGER--GGDLRLDVTRIFPGS-----AGAEVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLVQKPEG 123 (209)
T ss_pred CceEEEeeccccccc--CCeEEEEeeccCCCc-----cceEEEecCCcccccccCCCCCcccEEEEEeccEEEEEEcCCC
Confidence 556788888888777 999988888888875 56788999999999999999999 999999999999999987
Q ss_pred CccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhcc
Q 039441 400 SRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMN 479 (539)
Q Consensus 400 s~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~ 479 (539)
+..+..+++||+++||.++.|+++|+|+++|+|+.+.-++ ...... ...++.
T Consensus 124 ------------------------~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd~pLvf~~v~~~~-~~~~y~---~~~~~~ 175 (209)
T COG2140 124 ------------------------EARVIAVRAGDVIYVPPGYGHYTINTGDEPLVFLNVYPAD-AGQDYD---LIAWLG 175 (209)
T ss_pred ------------------------cEEEEEecCCcEEEeCCCcceEeecCCCCCEEEEEEEeCC-CCceee---eeehhc
Confidence 4677899999999999999999999999999999766554 222222 256888
Q ss_pred cCcHHHHHHHcCCCHHHHHHhh
Q 039441 480 QVERETMEVAFNVPARLIERVF 501 (539)
Q Consensus 480 ~~p~evLa~AF~vs~e~v~kL~ 501 (539)
+++.-+++..|+++...++.+.
T Consensus 176 ~~~~~~~~~~~~~~~~~~D~p~ 197 (209)
T COG2140 176 GMPPVLVENGLNKNPKYVDVPR 197 (209)
T ss_pred cCCceeeccccccCcccccCcc
Confidence 8999999999988876555543
No 9
>PF04702 Vicilin_N: Vicilin N terminal region; InterPro: IPR006792 This region is found in plant seed storage proteins, N-terminal to the Cupin domain (IPR006045 from INTERPRO). In Macadamia integrifolia (Macadamia nut) (Q9SPL4 from SWISSPROT), this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro [].
Probab=99.55 E-value=3.2e-14 Score=129.56 Aligned_cols=82 Identities=41% Similarity=0.864 Sum_probs=74.2
Q ss_pred CCCChHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhCCCccccccCCccccccCCCCCCCchhhHHHHHHHhhhhcc
Q 039441 43 VPQDPEEEYKQCKQLCEKQ-----EAVQRRCERHYKEQQGGGRRDYVVDDDEEEDEGNNHHRDPKWQHEQCLKQCERRES 117 (539)
Q Consensus 43 ~~~dp~~~~~~c~~~c~~q-----~~c~~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~c~~~c~~~~~ 117 (539)
++.||+++|++|+++|+.+ .+|.++|+++|++++ ..|.++|..|+++|+.|.+
T Consensus 51 r~~dPqr~ye~Cqq~Cqrq~~r~~~~C~qrCe~qye~eq----------------------~~pqkqy~eCqr~Ce~QeQ 108 (147)
T PF04702_consen 51 REEDPQRRYEQCQQRCQRQEPRQQQQCQQRCEEQYEKEQ----------------------QQPQKQYEECQRRCEEQEQ 108 (147)
T ss_pred CccCHHHHHHHHHHHHHHhchHHhHHHHHHHHHHHHHHH----------------------hhHHHHHHHHHHHHHHHhh
Confidence 3679999999999999998 399999999999976 2299999999999999999
Q ss_pred chHhHHHHHHHHHHHHhhhhhhhhccCCC
Q 039441 118 GEQQQQQCKSWCEKHRQKGQRRREKEGKF 146 (539)
Q Consensus 118 ~~~~~~~c~~~c~~~~~~~~~~~~~~~~~ 146 (539)
+++.+.+|+++|+++|+++++++++.++.
T Consensus 109 ~~r~qqQCq~rC~eqy~E~~~r~e~e~~~ 137 (147)
T PF04702_consen 109 GPRRQQQCQRRCEEQYQEQQGRGEGEEKW 137 (147)
T ss_pred chHHHHHHHHHHHHHHHHhhccccccccc
Confidence 99999999999999999999888777654
No 10
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=99.54 E-value=2.2e-12 Score=130.84 Aligned_cols=193 Identities=16% Similarity=0.194 Sum_probs=128.4
Q ss_pred ceeeEEEeeeCCCeee-cccc-cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441 199 DNYRLAILEANPSTLV-VPHH-SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK 276 (539)
Q Consensus 199 ~~~Rl~il~l~P~~l~-lPh~-~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~ 276 (539)
+.+-+.++++.|++-. .|++ ....+++||++|+..|++ ...++.|++||.++||+|++|.+.|.+ +++++++.
T Consensus 56 ~~f~~~~v~l~pgg~~~~~~~~~g~ee~iyVl~G~l~v~~----~g~~~~L~~Gd~~y~pa~~~H~~~N~~-~~~a~~l~ 130 (260)
T TIGR03214 56 ATFVQYIVEVHPGGGNTTGFGGEGIETFLFVISGEVNVTA----EGETHELREGGYAYLPPGSKWTLANAQ-AEDARFFL 130 (260)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCceEEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCCEEEEECC-CCCEEEEE
Confidence 5666777888998744 3443 345799999999999874 235789999999999999999999998 47777766
Q ss_pred EeccCCC-CCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCc-ccCCCce-EEEeCCcccccc
Q 039441 277 LLQPVNT-PGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPI-YNNNFGR-FFEATPKDYQQL 353 (539)
Q Consensus 277 l~d~~n~-pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~-~sn~~G~-i~~~~~~~fP~L 353 (539)
+-..... +|- ...-.|+.- ..+..+. +....|. ++.+-+.+ +
T Consensus 131 v~k~y~~~~g~-----~~~~~vvg~---------------------------~~dv~~~~~~g~~~~~~~~llp~~---~ 175 (260)
T TIGR03214 131 YKKRYQPVEGL-----HAPELVVGN---------------------------EKDIEPEPYEGMDDVILTTLLPKE---L 175 (260)
T ss_pred EEeeeEEcCCC-----CCCCeeecC---------------------------HHHCCccccCCCCcEEEEEeCchh---c
Confidence 5432100 000 000011100 0000000 0111222 33333222 2
Q ss_pred cccceeEEEEEEcCCceecc-eecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCC
Q 039441 354 QEIDAGVTYVEINQGGMMVP-HYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSP 432 (539)
Q Consensus 354 ~~l~isva~v~L~pGgm~~P-HwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~ 432 (539)
.. ++.+..++|.||+-... |.|. -.+..||++|+|.+.+ ++ + ...|.+
T Consensus 176 ~~-~~~~~~~~~~PG~~~~~~~~H~-~eh~~yiL~G~G~~~~---~g------------------------~--~~~V~~ 224 (260)
T TIGR03214 176 AF-DMNVHILSFEPGASHPYIETHV-MEHGLYVLEGKGVYNL---DN------------------------N--WVPVEA 224 (260)
T ss_pred CC-CcEEEEEEECCCcccCCccccc-ceeEEEEEeceEEEEE---CC------------------------E--EEEecC
Confidence 22 68888899999999874 5554 5567799999998854 22 1 257999
Q ss_pred CcEEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441 433 GVVFIIPPGHPIALVASPNEKLLTVGFSLN 462 (539)
Q Consensus 433 GDV~vVPaG~~h~i~n~gne~l~~v~F~~n 462 (539)
||+++||+|.+|+++|+|+++|.+|-.++-
T Consensus 225 GD~i~i~~~~~h~~~~~G~~~~~~l~ykd~ 254 (260)
T TIGR03214 225 GDYIWMGAYCPQACYAGGRGEFRYLLYKDM 254 (260)
T ss_pred CCEEEECCCCCEEEEecCCCcEEEEEEccc
Confidence 999999999999999999999999975543
No 11
>PRK11171 hypothetical protein; Provisional
Probab=99.54 E-value=1.7e-12 Score=131.94 Aligned_cols=195 Identities=16% Similarity=0.217 Sum_probs=132.7
Q ss_pred ceeeEEEeeeCCCeeeccc-cc-CCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441 199 DNYRLAILEANPSTLVVPH-HS-DAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK 276 (539)
Q Consensus 199 ~~~Rl~il~l~P~~l~lPh-~~-dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~ 276 (539)
..+-+.++++.|++-..++ |+ ...+++||++|++.+.+ ...++.|.+||.++||+|++|.+.|.+ ++.++++.
T Consensus 59 ~~~~~~~~~l~PG~~~~~~~h~~~~eE~~~VlsG~l~v~~----~g~~~~L~~GDsi~~p~~~~H~~~N~g-~~~a~~l~ 133 (266)
T PRK11171 59 ATFSQYLVEVEPGGGSDQPEPDEGAETFLFVVEGEITLTL----EGKTHALSEGGYAYLPPGSDWTLRNAG-AEDARFHW 133 (266)
T ss_pred CcEEEEEEEECCCCcCCCCCCCCCceEEEEEEeCEEEEEE----CCEEEEECCCCEEEECCCCCEEEEECC-CCCEEEEE
Confidence 4455667777999865444 33 56899999999999986 235899999999999999999999998 57788877
Q ss_pred EeccCCC-CCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCce-EE--EeCCccccc
Q 039441 277 LLQPVNT-PGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGR-FF--EATPKDYQQ 352 (539)
Q Consensus 277 l~d~~n~-pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~-i~--~~~~~~fP~ 352 (539)
+...... ++.+ .+. .|+.- ...+ ...+. ...-|. +. .+.+.+
T Consensus 134 v~~~y~~~~~~~----~p~-~~~~~------------------------~~d~-~~~~~-~g~~g~~~~~~~~~p~~--- 179 (266)
T PRK11171 134 IRKRYEPVEGHE----APE-AFVGN------------------------ESDI-EPIPM-PGTDGVWATTRLVDPED--- 179 (266)
T ss_pred EEcCCeEcCCCC----CCC-eEecc------------------------hhcc-ccccc-CCCCCeEEEEEeeCchh---
Confidence 6643211 0000 010 11100 0000 00111 111222 22 222221
Q ss_pred ccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCC
Q 039441 353 LQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSP 432 (539)
Q Consensus 353 L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~ 432 (539)
...++.+..++|.||+-+..|-|....+.+||++|++.+.+ + + + ...|.+
T Consensus 180 -~~~~~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~-~--~------------------------~--~~~l~~ 229 (266)
T PRK11171 180 -LRFDMHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL-N--N------------------------D--WVEVEA 229 (266)
T ss_pred -cCCCcEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE-C--C------------------------E--EEEeCC
Confidence 13347889999999999988533377899999999999965 2 2 1 257999
Q ss_pred CcEEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441 433 GVVFIIPPGHPIALVASPNEKLLTVGFSLN 462 (539)
Q Consensus 433 GDV~vVPaG~~h~i~n~gne~l~~v~F~~n 462 (539)
||++.+|++.+|++.|.+++++.++.+++-
T Consensus 230 GD~i~~~~~~~h~~~N~g~~~~~yl~~k~~ 259 (266)
T PRK11171 230 GDFIWMRAYCPQACYAGGPGPFRYLLYKDV 259 (266)
T ss_pred CCEEEECCCCCEEEECCCCCcEEEEEEccc
Confidence 999999999999999999999999987654
No 12
>smart00835 Cupin_1 Cupin. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel). This family contains 11S and 7S plant seed storage proteins, and germins. Plant seed storage proteins provide the major nitrogen source for the developing plant.
Probab=99.40 E-value=3.3e-12 Score=118.13 Aligned_cols=101 Identities=21% Similarity=0.381 Sum_probs=83.1
Q ss_pred eEecCCceEEEeeccCccc-ccccCcceeeEEEeeeCCCeeeccccc-CCCcEEEEEeceEEEEEEeCCC--ceeeecCC
Q 039441 174 RVRSDSGHMRVLQRFSQKS-HLLRGIDNYRLAILEANPSTLVVPHHS-DAETILVLLKGKGVITLVSHER--RESFNMEH 249 (539)
Q Consensus 174 ~v~se~G~i~vl~~f~~~s-~~l~gv~~~Rl~il~l~P~~l~lPh~~-dA~~~~yV~~G~g~i~~v~pg~--~~~~~v~~ 249 (539)
.+++++|.+++ |+... +.|.+ .++.+.+++++|++...|||| ++++++||++|++++.+..+++ ..++.|++
T Consensus 6 ~~~~~~g~~~~---~~~~~~~~~~~-~~~~~~~~~i~pg~~~~~h~H~~~~e~~~Vl~G~~~~~~~~~~~~~~~~~~l~~ 81 (146)
T smart00835 6 DFSNEGGRLRE---ADPTNFPALNG-LGISAARVNLEPGGMLPPHYHPRATELLYVVRGEGRVGVVDPNGNKVYDARLRE 81 (146)
T ss_pred cccCCCceEEE---eCchhCccccc-CceEEEEEEecCCcCcCCeeCCCCCEEEEEEeCeEEEEEEeCCCCeEEEEEecC
Confidence 47999999987 56544 55553 256677777799999999986 5899999999999999988754 45899999
Q ss_pred CcEEEeCCCCeEEEEecCCCceEEEEEEecc
Q 039441 250 GDVISVPAGTTYYLSNQDNVDRLHVAKLLQP 280 (539)
Q Consensus 250 GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~ 280 (539)
||+++||+|++||+.|.+ +++++++. +..
T Consensus 82 GD~~~ip~g~~H~~~n~~-~~~~~~l~-~~~ 110 (146)
T smart00835 82 GDVFVVPQGHPHFQVNSG-DENLEFVA-FNT 110 (146)
T ss_pred CCEEEECCCCEEEEEcCC-CCCEEEEE-Eec
Confidence 999999999999999998 58898875 443
No 13
>PF04702 Vicilin_N: Vicilin N terminal region; InterPro: IPR006792 This region is found in plant seed storage proteins, N-terminal to the Cupin domain (IPR006045 from INTERPRO). In Macadamia integrifolia (Macadamia nut) (Q9SPL4 from SWISSPROT), this region is processed into peptides of approximately 50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C motif. These peptides exhibit antimicrobial activity in vitro [].
Probab=99.39 E-value=1.2e-12 Score=119.25 Aligned_cols=79 Identities=42% Similarity=0.883 Sum_probs=69.0
Q ss_pred CCCCChHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhCCCccccccCCccccccCCCCCCCchhhHHHHHHHhhh
Q 039441 42 IVPQDPEEEYKQCKQLCEKQ-------EAVQRRCERHYKEQQGGGRRDYVVDDDEEEDEGNNHHRDPKWQHEQCLKQCER 114 (539)
Q Consensus 42 ~~~~dp~~~~~~c~~~c~~q-------~~c~~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~c~~~c~~ 114 (539)
.+++||+.+|++|+++|..+ .+|++||++.|++++++.+.+ ..||.++|..|.+.|+.
T Consensus 4 ~~~~DPqq~y~qCq~rC~~q~~g~r~q~qC~~RCE~q~~E~q~~~r~r---------------~~dPqr~ye~Cqq~Cqr 68 (147)
T PF04702_consen 4 RNPRDPQQQYEQCQRRCQRQERGQRQQQQCQQRCEEQYEEEQRRQRGR---------------EEDPQRRYEQCQQRCQR 68 (147)
T ss_pred ccccChHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccCC---------------ccCHHHHHHHHHHHHHH
Confidence 35899999999999999988 399999999999888664211 36999999999999999
Q ss_pred hccchHhHHHHHHHHHHHHhhhh
Q 039441 115 RESGEQQQQQCKSWCEKHRQKGQ 137 (539)
Q Consensus 115 ~~~~~~~~~~c~~~c~~~~~~~~ 137 (539)
++ ++..++|.++|...|++++
T Consensus 69 q~--~r~~~~C~qrCe~qye~eq 89 (147)
T PF04702_consen 69 QE--PRQQQQCQQRCEEQYEKEQ 89 (147)
T ss_pred hc--hHHhHHHHHHHHHHHHHHH
Confidence 98 7899999999999998764
No 14
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=99.05 E-value=5e-09 Score=109.75 Aligned_cols=211 Identities=22% Similarity=0.287 Sum_probs=128.7
Q ss_pred EEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccC--
Q 039441 204 AILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPV-- 281 (539)
Q Consensus 204 ~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~-- 281 (539)
.+-.|.|+....||-+.+..|.||++|+|..|+|+. +.+.+++||+|++|++..|.-.|.+ ++.++.+.++|-.
T Consensus 84 ~~q~l~pGe~~~~HRht~sAl~~vveG~G~~t~V~g---~~~~~~~gD~~~tP~w~wH~H~n~~-d~~~~wld~lD~Pl~ 159 (335)
T TIGR02272 84 GLQLILPGEVAPSHRHTQSALRFIVEGKGAFTAVDG---ERTTMHPGDFIITPSWTWHDHGNPG-DEPMIWLDGLDIPLV 159 (335)
T ss_pred hhEEeCCCCCCCccccccceEEEEEEcCceEEEECC---EEEeeeCCCEEEeCCCeeEecccCC-CCcEEEEecCCHHHH
Confidence 344468998999999999999999999998777753 4899999999999999999999997 4666655555521
Q ss_pred C-CCCCcee-c---cc----cCcc-EEEcChhhhhhcCccccccCCCCCCCCcceecC---------C--CCCcccCCCc
Q 039441 282 N-TPGQFRV-Q---QR----QQGT-IKRASQEQLKALSHHASSRRRHGRGSTAPFNLL---------S--RKPIYNNNFG 340 (539)
Q Consensus 282 n-~pg~f~~-~---~q----~~G~-Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~---------~--~~p~~sn~~G 340 (539)
. ....|.. . .+ +.|. ..+-.. .|.|-. . ......++ .|+.. . .......-.|
T Consensus 160 ~~l~~~f~e~~~~~~~~~~~~~~~~~~~~g~----~l~P~~-~-~~~~~~sP-~~~ypw~~~~~aL~~~~~~~~~~~~~g 232 (335)
T TIGR02272 160 QLFDCSFAEGYPEDQQPVTRPEGDSLARYGH----NMLPVR-H-KRSDRSSP-IFNYPYERSREALDDLTRTGEWDPWHG 232 (335)
T ss_pred HhhCcceeccccccccccccCCcchhhhccc----Cccccc-c-ccCCCCCC-ceecCcHHHHHHHHHHHhccCCCCCce
Confidence 1 1122222 0 01 1110 000000 011100 0 00000010 12221 1 1111122234
Q ss_pred e-EEEeCCcccc-cccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHh
Q 039441 341 R-FFEATPKDYQ-QLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEE 418 (539)
Q Consensus 341 ~-i~~~~~~~fP-~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~ 418 (539)
. +..+++.+=+ .+.. |+.....|.+|....||=| .+..|.||++|+|++.| ++
T Consensus 233 ~~l~y~NP~TG~~~~pt--i~~~~q~L~~G~~t~~~r~-T~s~Vf~VieG~G~s~i---g~------------------- 287 (335)
T TIGR02272 233 LKLRYVNPATGGYPMPT--IGAFIQLLPKGFRTATYRS-TDATVFCVVEGRGQVRI---GD------------------- 287 (335)
T ss_pred EEEEEeCCCCCCCcchh--HHHHHhccCCCCCCCCccc-cccEEEEEEeCeEEEEE---CC-------------------
Confidence 4 4555654443 3333 4555577888888888876 77899999999999988 22
Q ss_pred hhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEE
Q 039441 419 SSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGF 459 (539)
Q Consensus 419 ~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F 459 (539)
++ +++++||+|+||..+.|...|. ++..++.|
T Consensus 288 -----~~--~~W~~gD~f~vPsW~~~~h~a~--~da~Lf~~ 319 (335)
T TIGR02272 288 -----AV--FRFSPKDVFVVPSWHPVRFEAS--DDAVLFSF 319 (335)
T ss_pred -----EE--EEecCCCEEEECCCCcEecccC--CCeEEEEe
Confidence 23 5899999999999988877775 34544444
No 15
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=99.05 E-value=2.4e-09 Score=104.08 Aligned_cols=96 Identities=20% Similarity=0.276 Sum_probs=78.3
Q ss_pred EEEeCCcccccccccceeEEEEEEcCCce------ecceecCCCC--EEEEEEeceEEEEEecCCCCccchhhhhhhhHH
Q 039441 342 FFEATPKDYQQLQEIDAGVTYVEINQGGM------MVPHYNSKAT--TIVLVVEGRGRFEMGGPLSSRWSQESQREQQEE 413 (539)
Q Consensus 342 i~~~~~~~fP~L~~l~isva~v~L~pGgm------~~PHwhpnA~--ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~ 413 (539)
++.+.. ..|.+...+|.+..+.|.||.+ ..+|||++++ ||.||++|+|.+.+-...+
T Consensus 53 ~Y~v~~-~~~~~~~~~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G-------------- 117 (191)
T PRK04190 53 VYEVYA-IEPEETEGDLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEG-------------- 117 (191)
T ss_pred EEEEEE-ecCCCcCCceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCC--------------
Confidence 444443 3344566689999999999996 5679998664 9999999999999877654
Q ss_pred HHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441 414 EEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLN 462 (539)
Q Consensus 414 ~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~n 462 (539)
......+++||+++||+|++|.++|+++++|.++++...
T Consensus 118 ----------~~~~~~v~pGd~v~IPpg~~H~~iN~G~epl~fl~v~p~ 156 (191)
T PRK04190 118 ----------EARWIEMEPGTVVYVPPYWAHRSVNTGDEPLVFLACYPA 156 (191)
T ss_pred ----------cEEEEEECCCCEEEECCCCcEEeEECCCCCEEEEEEEcC
Confidence 234578999999999999999999999999999986544
No 16
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=99.00 E-value=2.5e-09 Score=97.24 Aligned_cols=80 Identities=25% Similarity=0.424 Sum_probs=70.3
Q ss_pred ceeeEEEeeeCCCeee-cccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441 199 DNYRLAILEANPSTLV-VPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL 277 (539)
Q Consensus 199 ~~~Rl~il~l~P~~l~-lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l 277 (539)
..|+++.+.++|+.-. +++|++.++++||++|+|+|.+= ..++.|++||.++||+|++|++.|.| +.+|.++.+
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~----~~~~~v~~gd~~~iP~g~~H~~~N~G-~~~L~liei 108 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIG----GEEVEVKAGDSVYIPAGTPHRVRNTG-KIPLVLIEV 108 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEEC----CEEEEecCCCEEEECCCCcEEEEcCC-CcceEEEEE
Confidence 5788888999999975 66677899999999999999983 57899999999999999999999999 599999988
Q ss_pred eccCCC
Q 039441 278 LQPVNT 283 (539)
Q Consensus 278 ~d~~n~ 283 (539)
-.+...
T Consensus 109 ~~p~~~ 114 (127)
T COG0662 109 QSPPYL 114 (127)
T ss_pred ecCCcC
Confidence 776554
No 17
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=98.93 E-value=5.1e-09 Score=83.93 Aligned_cols=69 Identities=23% Similarity=0.450 Sum_probs=58.9
Q ss_pred EeeeCCCeeecccccCCC-cEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441 205 ILEANPSTLVVPHHSDAE-TILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL 278 (539)
Q Consensus 205 il~l~P~~l~lPh~~dA~-~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~ 278 (539)
++++.|++-..+|++... +++||++|++.+. ++. ..+.|++||+++||+|+.|++.|.+ +++++++.|+
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~---~~~~l~~Gd~~~i~~~~~H~~~n~~-~~~~~~l~V~ 71 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDG---ERVELKPGDAIYIPPGVPHQVRNPG-DEPARFLVVY 71 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETT---EEEEEETTEEEEEETTSEEEEEEES-SSEEEEEEEE
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ecc---EEeEccCCEEEEECCCCeEEEEECC-CCCEEEEEEC
Confidence 466799997778866666 9999999999998 442 3899999999999999999999999 4789888765
No 18
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=98.92 E-value=8.1e-09 Score=100.87 Aligned_cols=110 Identities=21% Similarity=0.339 Sum_probs=84.4
Q ss_pred cCCCceeecCccceeEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccc-cCCCc--EEEEEeceEEEEE
Q 039441 160 ENNPYYFHSQRFRYRVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHH-SDAET--ILVLLKGKGVITL 236 (539)
Q Consensus 160 ~~~py~f~~~~f~~~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~-~dA~~--~~yV~~G~g~i~~ 236 (539)
..-|+++........++ +|.++ |+. +..+.|-... ++.+.|++.++.|| .+|++ |.||+.|+|..++
T Consensus 49 ~~~~~~yel~~~~~~~~--~g~L~----~~~-t~~~pGs~g~---e~~~t~G~~~~~H~Hp~ade~E~y~vi~G~g~m~v 118 (209)
T COG2140 49 KEDDFVYELLESEPGER--GGDLR----LDV-TRIFPGSAGA---EVFKTPGAMRELHYHPNADEPEIYYVLKGEGRMLV 118 (209)
T ss_pred CCCceEEEeeccccccc--CCeEE----EEe-eccCCCccce---EEEecCCcccccccCCCCCcccEEEEEeccEEEEE
Confidence 34466666555444555 88887 443 3455553222 23459999999995 58888 9999999999999
Q ss_pred EeCCC-ceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEecc
Q 039441 237 VSHER-RESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP 280 (539)
Q Consensus 237 v~pg~-~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~ 280 (539)
-.+++ ..+..+++||+++||.|..|++.|+| +++|+++.++-.
T Consensus 119 ~~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~G-d~pLvf~~v~~~ 162 (209)
T COG2140 119 QKPEGEARVIAVRAGDVIYVPPGYGHYTINTG-DEPLVFLNVYPA 162 (209)
T ss_pred EcCCCcEEEEEecCCcEEEeCCCcceEeecCC-CCCEEEEEEEeC
Confidence 98774 56899999999999999999999999 599999888863
No 19
>PF07883 Cupin_2: Cupin domain; InterPro: IPR013096 This family represents the conserved barrel domain of the cupin superfamily [] (cupa is the Latin term for a small barrel). ; PDB: 2OPK_C 3BU7_B 2PHD_D 3NVC_A 3NKT_A 3NJZ_A 3NW4_A 3NST_A 3NL1_A 2H0V_A ....
Probab=98.90 E-value=9.4e-09 Score=82.40 Aligned_cols=69 Identities=25% Similarity=0.438 Sum_probs=61.5
Q ss_pred EEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCC
Q 039441 362 YVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPG 441 (539)
Q Consensus 362 ~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG 441 (539)
+++|.||+...+|+|+...++.||++|++.+. +.. + ...|++||+++||+|
T Consensus 2 ~~~~~pG~~~~~h~H~~~~e~~~vl~G~~~~~-~~~--------------------------~--~~~l~~Gd~~~i~~~ 52 (71)
T PF07883_consen 2 LVTLPPGGSIPPHRHPGEDEFFYVLSGEGTLT-VDG--------------------------E--RVELKPGDAIYIPPG 52 (71)
T ss_dssp EEEEETTEEEEEEEESSEEEEEEEEESEEEEE-ETT--------------------------E--EEEEETTEEEEEETT
T ss_pred EEEECCCCCCCCEECCCCCEEEEEEECCEEEE-Ecc--------------------------E--EeEccCCEEEEECCC
Confidence 57899999999999988889999999999998 443 1 257999999999999
Q ss_pred CeEEEEcCCCCcEEEEEE
Q 039441 442 HPIALVASPNEKLLTVGF 459 (539)
Q Consensus 442 ~~h~i~n~gne~l~~v~F 459 (539)
-+|.+.|.+++++.+|.+
T Consensus 53 ~~H~~~n~~~~~~~~l~V 70 (71)
T PF07883_consen 53 VPHQVRNPGDEPARFLVV 70 (71)
T ss_dssp SEEEEEEESSSEEEEEEE
T ss_pred CeEEEEECCCCCEEEEEE
Confidence 999999999999999875
No 20
>COG0662 {ManC} Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=3.3e-08 Score=89.87 Aligned_cols=79 Identities=18% Similarity=0.307 Sum_probs=70.2
Q ss_pred cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441 356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV 435 (539)
Q Consensus 356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV 435 (539)
...+++.+.+.||+-..+|.|...+++.||++|+|.|.+=+. ...|++||+
T Consensus 34 ~~~~~~~~~v~pg~~~~~~~H~~~dE~~~Vl~G~g~v~~~~~-----------------------------~~~v~~gd~ 84 (127)
T COG0662 34 DRYSIARILVKPGEEISLHHHHHRDEHWYVLEGTGKVTIGGE-----------------------------EVEVKAGDS 84 (127)
T ss_pred CcEEEEEEEECCCcccCcccccCcceEEEEEeeEEEEEECCE-----------------------------EEEecCCCE
Confidence 468899999999999999999999999999999999977521 257999999
Q ss_pred EEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441 436 FIIPPGHPIALVASPNEKLLTVGFSLNA 463 (539)
Q Consensus 436 ~vVPaG~~h~i~n~gne~l~~v~F~~na 463 (539)
++||+|.+|.+.|.|+.+|.++++...+
T Consensus 85 ~~iP~g~~H~~~N~G~~~L~liei~~p~ 112 (127)
T COG0662 85 VYIPAGTPHRVRNTGKIPLVLIEVQSPP 112 (127)
T ss_pred EEECCCCcEEEEcCCCcceEEEEEecCC
Confidence 9999999999999999999999976554
No 21
>PRK04190 glucose-6-phosphate isomerase; Provisional
Probab=98.73 E-value=7.9e-08 Score=93.62 Aligned_cols=80 Identities=24% Similarity=0.267 Sum_probs=67.2
Q ss_pred eeeEEEeeeCCCee------eccccc---CCCcEEEEEeceEEEEEEeCC-CceeeecCCCcEEEeCCCCeEEEEecCCC
Q 039441 200 NYRLAILEANPSTL------VVPHHS---DAETILVLLKGKGVITLVSHE-RRESFNMEHGDVISVPAGTTYYLSNQDNV 269 (539)
Q Consensus 200 ~~Rl~il~l~P~~l------~lPh~~---dA~~~~yV~~G~g~i~~v~pg-~~~~~~v~~GDV~~iPaG~~h~i~N~g~~ 269 (539)
..++.+.+|.|+.+ .-+||| +.+++.||++|+|++.+-+.+ ....+.+++||+++||+|++|.+.|+| +
T Consensus 67 ~L~~g~t~l~PG~~g~e~~mt~gH~H~~~~~~EiyyvlsG~g~~~l~~~~G~~~~~~v~pGd~v~IPpg~~H~~iN~G-~ 145 (191)
T PRK04190 67 DLNFGTTRLYPGKVGDEYFMTKGHFHAKADRAEIYYGLKGKGLMLLQDPEGEARWIEMEPGTVVYVPPYWAHRSVNTG-D 145 (191)
T ss_pred ceEEEEEEECCCcEecccccCCCeEcCCCCCCEEEEEEeCEEEEEEecCCCcEEEEEECCCCEEEECCCCcEEeEECC-C
Confidence 45677788899997 346876 456999999999999986654 456899999999999999999999999 6
Q ss_pred ceEEEEEEecc
Q 039441 270 DRLHVAKLLQP 280 (539)
Q Consensus 270 e~L~iv~l~d~ 280 (539)
++|+++++...
T Consensus 146 epl~fl~v~p~ 156 (191)
T PRK04190 146 EPLVFLACYPA 156 (191)
T ss_pred CCEEEEEEEcC
Confidence 89999998763
No 22
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.69 E-value=1.2e-07 Score=86.02 Aligned_cols=81 Identities=26% Similarity=0.397 Sum_probs=68.2
Q ss_pred ccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeee
Q 039441 351 QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANL 430 (539)
Q Consensus 351 P~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L 430 (539)
+.....++++..+.+.||+....|.||-...++||++|++++++-.+ . ..|
T Consensus 36 ~~~~~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~g~---------------------------~--~~l 86 (131)
T COG1917 36 PRNEGENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLEGE---------------------------K--KEL 86 (131)
T ss_pred cCCCCceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEecCC---------------------------c--eEe
Confidence 33346678999999999999999999878899999999999998732 1 469
Q ss_pred CCCcEEEeCCCCeEEEEcCCCCcEEEEEEe
Q 039441 431 SPGVVFIIPPGHPIALVASPNEKLLTVGFS 460 (539)
Q Consensus 431 ~~GDV~vVPaG~~h~i~n~gne~l~~v~F~ 460 (539)
++||+++||+|..|+..|.++..+.+|++.
T Consensus 87 ~~Gd~i~ip~g~~H~~~a~~~~~~~~l~v~ 116 (131)
T COG1917 87 KAGDVIIIPPGVVHGLKAVEDEPMVLLLVF 116 (131)
T ss_pred cCCCEEEECCCCeeeeccCCCCceeEEEEe
Confidence 999999999999999999988765655543
No 23
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.69 E-value=1.1e-07 Score=86.76 Aligned_cols=77 Identities=12% Similarity=0.212 Sum_probs=61.6
Q ss_pred eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441 200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ 279 (539)
Q Consensus 200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d 279 (539)
++.+..++++|++-.-.|+++..++.||++|++.+..+.. .+++.|.+||.++||+|.+|+|.|. +++++|+++.
T Consensus 34 ~~~~~~~~l~pG~~~~~h~h~~~E~~yVL~G~~~~~~i~~--g~~~~L~aGD~i~~~~~~~H~~~N~---e~~~~l~v~t 108 (125)
T PRK13290 34 GFSFHETTIYAGTETHLHYKNHLEAVYCIEGEGEVEDLAT--GEVHPIRPGTMYALDKHDRHYLRAG---EDMRLVCVFN 108 (125)
T ss_pred CEEEEEEEECCCCcccceeCCCEEEEEEEeCEEEEEEcCC--CEEEEeCCCeEEEECCCCcEEEEcC---CCEEEEEEEC
Confidence 3444455669999666666666789999999999985432 3579999999999999999999997 6788888887
Q ss_pred cC
Q 039441 280 PV 281 (539)
Q Consensus 280 ~~ 281 (539)
|.
T Consensus 109 P~ 110 (125)
T PRK13290 109 PP 110 (125)
T ss_pred CC
Confidence 53
No 24
>COG1917 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.67 E-value=1e-07 Score=86.35 Aligned_cols=78 Identities=21% Similarity=0.373 Sum_probs=66.6
Q ss_pred cceeeEEEeeeCCCeeecccccC-CCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441 198 IDNYRLAILEANPSTLVVPHHSD-AETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK 276 (539)
Q Consensus 198 v~~~Rl~il~l~P~~l~lPh~~d-A~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~ 276 (539)
-.++.++.++++|++..-.|.++ .+..+||++|++.+++- ...+.+++||+|.||+|+.||+.|.++.. +..|+
T Consensus 40 ~~~~~~~~v~~~~G~~~~~H~hp~~~~~~~Vl~G~~~~~~~----g~~~~l~~Gd~i~ip~g~~H~~~a~~~~~-~~~l~ 114 (131)
T COG1917 40 GENLSVVLVTFEPGAVIPWHTHPLGEQTIYVLEGEGTVQLE----GEKKELKAGDVIIIPPGVVHGLKAVEDEP-MVLLL 114 (131)
T ss_pred CceEEEEEEEECCCcccccccCCCcceEEEEEecEEEEEec----CCceEecCCCEEEECCCCeeeeccCCCCc-eeEEE
Confidence 35677788888999999999887 88999999999999985 56899999999999999999999998543 56666
Q ss_pred Eecc
Q 039441 277 LLQP 280 (539)
Q Consensus 277 l~d~ 280 (539)
++..
T Consensus 115 v~~~ 118 (131)
T COG1917 115 VFPL 118 (131)
T ss_pred Eeee
Confidence 6654
No 25
>PRK13290 ectC L-ectoine synthase; Reviewed
Probab=98.59 E-value=4.8e-07 Score=82.47 Aligned_cols=76 Identities=20% Similarity=0.218 Sum_probs=63.9
Q ss_pred cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441 356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV 435 (539)
Q Consensus 356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV 435 (539)
.++++.+++|.||+-...|+|.. .+++||++|++.+.++..+ +. ..|.+||+
T Consensus 33 ~~~~~~~~~l~pG~~~~~h~h~~-~E~~yVL~G~~~~~~i~~g-------------------------~~--~~L~aGD~ 84 (125)
T PRK13290 33 MGFSFHETTIYAGTETHLHYKNH-LEAVYCIEGEGEVEDLATG-------------------------EV--HPIRPGTM 84 (125)
T ss_pred CCEEEEEEEECCCCcccceeCCC-EEEEEEEeCEEEEEEcCCC-------------------------EE--EEeCCCeE
Confidence 46788999999999888899855 6899999999999855321 12 57999999
Q ss_pred EEeCCCCeEEEEcCCCCcEEEEEEee
Q 039441 436 FIIPPGHPIALVASPNEKLLTVGFSL 461 (539)
Q Consensus 436 ~vVPaG~~h~i~n~gne~l~~v~F~~ 461 (539)
+++|++.+|.+.|. +++++|++.+
T Consensus 85 i~~~~~~~H~~~N~--e~~~~l~v~t 108 (125)
T PRK13290 85 YALDKHDRHYLRAG--EDMRLVCVFN 108 (125)
T ss_pred EEECCCCcEEEEcC--CCEEEEEEEC
Confidence 99999999999997 7899998654
No 26
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=98.48 E-value=6.9e-07 Score=90.89 Aligned_cols=77 Identities=22% Similarity=0.181 Sum_probs=64.0
Q ss_pred eeeEEEeeeCCCeeec-ccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441 200 NYRLAILEANPSTLVV-PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL 278 (539)
Q Consensus 200 ~~Rl~il~l~P~~l~l-Ph~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~ 278 (539)
++.+.+++++|++-.= +||+.-.+..||++|+|++.+ +.+.+.|.+||+++||||++||++|+| +++|++|+.=
T Consensus 178 ~~~~~~~~~~PG~~~~~~~~H~~eh~~yiL~G~G~~~~----~g~~~~V~~GD~i~i~~~~~h~~~~~G-~~~~~~l~yk 252 (260)
T TIGR03214 178 DMNVHILSFEPGASHPYIETHVMEHGLYVLEGKGVYNL----DNNWVPVEAGDYIWMGAYCPQACYAGG-RGEFRYLLYK 252 (260)
T ss_pred CcEEEEEEECCCcccCCcccccceeEEEEEeceEEEEE----CCEEEEecCCCEEEECCCCCEEEEecC-CCcEEEEEEc
Confidence 5666778899999885 456777788999999999976 457899999999999999999999999 5889876644
Q ss_pred ccCC
Q 039441 279 QPVN 282 (539)
Q Consensus 279 d~~n 282 (539)
| +|
T Consensus 253 d-~n 255 (260)
T TIGR03214 253 D-MN 255 (260)
T ss_pred c-cc
Confidence 4 44
No 27
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.47 E-value=5.5e-07 Score=84.30 Aligned_cols=79 Identities=19% Similarity=0.310 Sum_probs=66.4
Q ss_pred CcceeeEEEeeeCCCeee-cccc-cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCC--CeEEEEecCCCceE
Q 039441 197 GIDNYRLAILEANPSTLV-VPHH-SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAG--TTYYLSNQDNVDRL 272 (539)
Q Consensus 197 gv~~~Rl~il~l~P~~l~-lPh~-~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG--~~h~i~N~g~~e~L 272 (539)
|++.+.+.+..++|++.- ++|| +--++|+||+.|++++-+ ....+.|++||++.|||| ++|.++|.+ ...|
T Consensus 38 Gl~~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~----d~~e~~lrpGD~~gFpAG~~~aHhliN~s-~~~~ 112 (161)
T COG3837 38 GLKRFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE----DGGETRLRPGDSAGFPAGVGNAHHLINRS-DVIL 112 (161)
T ss_pred ChhhcccceEEeCCCCccccccccccCceEEEEEcCceEEEE----CCeeEEecCCceeeccCCCcceeEEeecC-CceE
Confidence 888999999999999976 5775 577899999999987654 234789999999999999 999999998 5777
Q ss_pred EEEEEecc
Q 039441 273 HVAKLLQP 280 (539)
Q Consensus 273 ~iv~l~d~ 280 (539)
+++.+-+.
T Consensus 113 ~yL~vG~r 120 (161)
T COG3837 113 RYLEVGTR 120 (161)
T ss_pred EEEEeccc
Confidence 77776653
No 28
>COG3837 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=98.43 E-value=8.7e-07 Score=82.96 Aligned_cols=78 Identities=22% Similarity=0.347 Sum_probs=67.1
Q ss_pred ceeEEEEEEcCCcee-cceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441 357 DAGVTYVEINQGGMM-VPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV 435 (539)
Q Consensus 357 ~isva~v~L~pGgm~-~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV 435 (539)
++.|....+.||+.. .+|||+.-.|++||++|++.+-+ .++ ...|++||+
T Consensus 41 ~fGvn~~~v~PG~~Ss~~H~Hs~edEfv~ILeGE~~l~~--d~~---------------------------e~~lrpGD~ 91 (161)
T COG3837 41 RFGVNLEIVEPGGESSLRHWHSAEDEFVYILEGEGTLRE--DGG---------------------------ETRLRPGDS 91 (161)
T ss_pred hcccceEEeCCCCccccccccccCceEEEEEcCceEEEE--CCe---------------------------eEEecCCce
Confidence 478889999999986 68999999999999999997643 211 256999999
Q ss_pred EEeCCC--CeEEEEcCCCCcEEEEEEeecC
Q 039441 436 FIIPPG--HPIALVASPNEKLLTVGFSLNA 463 (539)
Q Consensus 436 ~vVPaG--~~h~i~n~gne~l~~v~F~~na 463 (539)
+-+|+| .+|.++|.++..+.+|++.+..
T Consensus 92 ~gFpAG~~~aHhliN~s~~~~~yL~vG~r~ 121 (161)
T COG3837 92 AGFPAGVGNAHHLINRSDVILRYLEVGTRE 121 (161)
T ss_pred eeccCCCcceeEEeecCCceEEEEEecccc
Confidence 999999 9999999999999999988765
No 29
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.41 E-value=2.4e-06 Score=87.28 Aligned_cols=207 Identities=24% Similarity=0.279 Sum_probs=128.0
Q ss_pred CCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccC--CCC-C
Q 039441 209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPV--NTP-G 285 (539)
Q Consensus 209 ~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~--n~p-g 285 (539)
-|+-+.-+|-|+.+.+-||++|+|.-|+|+-+ ....++||.|..|+++.|.=-|.| .++++.+--+|.. +.- .
T Consensus 100 lPGEvApsHrHsqsAlRFvveG~Ga~T~VdGe---r~~M~~GDfilTP~w~wHdHgn~g-~eP~iWlDgLDiplv~~l~~ 175 (351)
T COG3435 100 LPGEVAPSHRHNQSALRFVVEGKGAYTVVDGE---RTPMEAGDFILTPAWTWHDHGNEG-TEPCIWLDGLDIPLVNSLGA 175 (351)
T ss_pred cCcccCCcccccccceEEEEeccceeEeecCc---eeeccCCCEEEccCceeccCCCCC-CCceEEEcccchHHHHhhcc
Confidence 68877777879999999999999999999865 457899999999999999999998 6888776666632 221 1
Q ss_pred Cce-e---cccc-----CccEEEcChhhhhhcCccccccCCCCCCCCcceec--------------CCCCCcccCCCceE
Q 039441 286 QFR-V---QQRQ-----QGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNL--------------LSRKPIYNNNFGRF 342 (539)
Q Consensus 286 ~f~-~---~~q~-----~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl--------------~~~~p~~sn~~G~i 342 (539)
.|. . .+++ .+.+.+.... ++-+.-.. +...+--||. +...+.+ ++=.+
T Consensus 176 gFfe~~~e~~q~v~~~~~d~~ar~~~~-~rP~~~r~------~~~~SPlf~Y~w~~t~eAL~~la~~e~~dp~--dG~~~ 246 (351)
T COG3435 176 GFFEEHPEEQQPVTRPEGDSLARYGPG-MRPLRHRW------GKPYSPLFNYAWDRTREALERLARLEEPDPF--DGYKM 246 (351)
T ss_pred cccccCchhcCcccCCCCCchhhcCCC-ccccccCC------CCCCCcccccccccHHHHHHHHHhccCCCCC--CcceE
Confidence 222 2 1111 1122221111 11111100 0000000111 1111111 12223
Q ss_pred EEeCCccc-ccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhc
Q 039441 343 FEATPKDY-QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSR 421 (539)
Q Consensus 343 ~~~~~~~f-P~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~ 421 (539)
..+++.+= -+. ..|++.+--|.||-...+|-|++ +.|.-|++|+|.+.|-..
T Consensus 247 ryvNP~TGg~~m--ptI~a~mqlL~~Gf~~~~~r~t~-s~iy~V~eGsg~~~Ig~~------------------------ 299 (351)
T COG3435 247 RYVNPVTGGYAM--PTIGAFMQLLPPGFHGKAHRHTD-STIYHVVEGSGYTIIGGE------------------------ 299 (351)
T ss_pred EEecCCCCCCcC--chHHHHHHhcCCcccCCceeccC-CEEEEEEecceeEEECCE------------------------
Confidence 44443221 011 12555666688888889998854 578889999998866332
Q ss_pred ceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEee
Q 039441 422 ELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSL 461 (539)
Q Consensus 422 ~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~ 461 (539)
+ +..++||+||||.=+.|-+.|. .++..++||.+
T Consensus 300 ---r--f~~~~~D~fvVPsW~~~~~~~g-s~da~LFsfsD 333 (351)
T COG3435 300 ---R--FDWSAGDIFVVPSWAWHEHVNG-SEDAVLFSFSD 333 (351)
T ss_pred ---E--eeccCCCEEEccCcceeecccC-CcceEEEecCC
Confidence 3 6789999999999999999996 56677777743
No 30
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.39 E-value=4.6e-06 Score=80.17 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=61.4
Q ss_pred eeEEEeeeCCCeeec-ccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441 201 YRLAILEANPSTLVV-PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ 279 (539)
Q Consensus 201 ~Rl~il~l~P~~l~l-Ph~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d 279 (539)
+-+.++++.|++-.. ++|+...+++||++|++.+.+ +...+.|.+||.++||++++|.+.|.+ +++++++.+..
T Consensus 107 ~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~----~~~~~~l~~Gd~~~~~~~~~H~~~n~~-~~~~~~l~~~~ 181 (185)
T PRK09943 107 LAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTI----NGQDYHLVAGQSYAINTGIPHSFSNTS-AGICRIISAHT 181 (185)
T ss_pred eEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEE----CCEEEEecCCCEEEEcCCCCeeeeCCC-CCCeEEEEEeC
Confidence 334455669988643 557888999999999999876 237899999999999999999999987 57888888765
Q ss_pred c
Q 039441 280 P 280 (539)
Q Consensus 280 ~ 280 (539)
|
T Consensus 182 p 182 (185)
T PRK09943 182 P 182 (185)
T ss_pred C
Confidence 4
No 31
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=98.35 E-value=3.9e-06 Score=81.20 Aligned_cols=92 Identities=22% Similarity=0.299 Sum_probs=56.9
Q ss_pred ccccccceeEEEEEEcCCc------eecceecCC------CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHh
Q 039441 351 QQLQEIDAGVTYVEINQGG------MMVPHYNSK------ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEE 418 (539)
Q Consensus 351 P~L~~l~isva~v~L~pGg------m~~PHwhpn------A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~ 418 (539)
..|+..+|......|.||- |..-|||+. .+|+.+|++|+|.+-+-.+.+..
T Consensus 43 ~~~~~~~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~----------------- 105 (182)
T PF06560_consen 43 EWLQKRNLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDD----------------- 105 (182)
T ss_dssp -------EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-------------------
T ss_pred ccceeeeEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCc-----------------
Confidence 4456667888888888886 567899998 89999999999999998887511
Q ss_pred hhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441 419 SSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLN 462 (539)
Q Consensus 419 ~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~n 462 (539)
-. ..+.-.+.+||+++||.+++|..+|+|+++|.+.+....
T Consensus 106 ~~---~~~~v~~~~G~~v~IPp~yaH~tIN~g~~~L~~~~~~~~ 146 (182)
T PF06560_consen 106 VG---DVIAVEAKPGDVVYIPPGYAHRTINTGDEPLVFAAWVPR 146 (182)
T ss_dssp ------EEEEEE-TTEEEEE-TT-EEEEEE-SSS-EEEEEEEET
T ss_pred ce---eEEEEEeCCCCEEEECCCceEEEEECCCCcEEEEEEEec
Confidence 00 255578999999999999999999999999999875543
No 32
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.31 E-value=9.3e-06 Score=76.44 Aligned_cols=88 Identities=16% Similarity=0.210 Sum_probs=76.1
Q ss_pred CceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHh
Q 039441 339 FGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEE 418 (539)
Q Consensus 339 ~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~ 418 (539)
.|+...++.. -++.+-++.+.||..+.+|+|..-++.-+|++|.|.+++ ++
T Consensus 51 WG~~~~l~~~-------~~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~---~~------------------- 101 (151)
T PF01050_consen 51 WGSYEVLDEG-------EGYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL---DD------------------- 101 (151)
T ss_pred CcEEEEEEcc-------CCEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE---CC-------------------
Confidence 7887777743 357889999999999999999999999999999999986 21
Q ss_pred hhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441 419 SSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLN 462 (539)
Q Consensus 419 ~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~n 462 (539)
+ ...|.+||+++||+|..|.+.|.|+.+|.||.+-+.
T Consensus 102 -----~--~~~~~~g~sv~Ip~g~~H~i~n~g~~~L~~IEVq~G 138 (151)
T PF01050_consen 102 -----E--EFTLKEGDSVYIPRGAKHRIENPGKTPLEIIEVQTG 138 (151)
T ss_pred -----E--EEEEcCCCEEEECCCCEEEEECCCCcCcEEEEEecC
Confidence 1 257999999999999999999999999999987654
No 33
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.26 E-value=4e-06 Score=92.00 Aligned_cols=88 Identities=16% Similarity=0.196 Sum_probs=73.7
Q ss_pred CceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHh
Q 039441 339 FGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEE 418 (539)
Q Consensus 339 ~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~ 418 (539)
.|....+.. +-++.+..++|.||+-..+|+|+...++.||++|++.+.+=.
T Consensus 364 WG~~~~~~~-------~~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~dg---------------------- 414 (468)
T TIGR01479 364 WGKYDSIDQ-------GDRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTIGD---------------------- 414 (468)
T ss_pred CCceEEEec-------CCCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEECC----------------------
Confidence 777555542 335889999999999889999999999999999999997532
Q ss_pred hhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441 419 SSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLN 462 (539)
Q Consensus 419 ~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~n 462 (539)
+ +..|++||.++||+|.+|.+.|.+++++++|++.+.
T Consensus 415 -----~--~~~l~~GDsi~ip~~~~H~~~N~g~~~~~~i~v~~~ 451 (468)
T TIGR01479 415 -----E--TLLLTENESTYIPLGVIHRLENPGKIPLELIEVQSG 451 (468)
T ss_pred -----E--EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcC
Confidence 1 257999999999999999999999999999987653
No 34
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.25 E-value=5.4e-06 Score=91.18 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=64.3
Q ss_pred ceeeEEEeeeCCCeee-cccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441 199 DNYRLAILEANPSTLV-VPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL 277 (539)
Q Consensus 199 ~~~Rl~il~l~P~~l~-lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l 277 (539)
.+|.+..|++.|++-. +|.|+...+..||++|++.+++= -+++.|.+||.++||+|++|.|.|.| +++|+||.+
T Consensus 383 ~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~id----g~~~~L~~GDSi~ip~g~~H~~~N~g-~~~l~iI~V 457 (478)
T PRK15460 383 DRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTID----GDIKLLGENESIYIPLGATHCLENPG-KIPLDLIEV 457 (478)
T ss_pred CcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEEC----CEEEEecCCCEEEECCCCcEEEEcCC-CCCEEEEEE
Confidence 4566777788999744 44466777999999999999883 36899999999999999999999999 589999998
Q ss_pred ecc
Q 039441 278 LQP 280 (539)
Q Consensus 278 ~d~ 280 (539)
..+
T Consensus 458 ~~g 460 (478)
T PRK15460 458 RSG 460 (478)
T ss_pred EcC
Confidence 753
No 35
>PF01050 MannoseP_isomer: Mannose-6-phosphate isomerase; InterPro: IPR001538 Mannose-6-phosphate isomerase or phosphomannose isomerase (5.3.1.8 from EC) (PMI) is the enzyme that catalyses the interconversion of mannose-6-phosphate and fructose-6-phosphate. In eukaryotes PMI is involved in the synthesis of GDP-mannose, a constituent of N- and O-linked glycans and GPI anchors and in prokaryotes it participates in a variety of pathways, including capsular polysaccharide biosynthesis and D-mannose metabolism. PMI's belong to the cupin superfamily whose functions range from isomerase and epimerase activities involved in the modification of cell wall carbohydrates in bacteria and plants, to non-enzymatic storage proteins in plant seeds, and transcription factors linked to congenital baldness in mammals []. Three classes of PMI have been defined []. The type II phosphomannose isomerases are bifunctional enzymes 5.3.1.8 from EC. This entry covers the isomerase region of the protein []. The guanosine diphospho-D-mannose pyrophosphorylase region is described in another InterPro entry (see IPR005836 from INTERPRO).; GO: 0016779 nucleotidyltransferase activity, 0005976 polysaccharide metabolic process
Probab=98.25 E-value=9.9e-06 Score=76.24 Aligned_cols=75 Identities=20% Similarity=0.426 Sum_probs=64.2
Q ss_pred eeeEEEeeeCCCeeeccc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441 200 NYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL 278 (539)
Q Consensus 200 ~~Rl~il~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~ 278 (539)
.|.+..|+++|+.-+-.| |..-++..+|++|.|.|++ +...+.|.+||.++||+|+.|-|.|.| +.+|+|+=+-
T Consensus 62 ~~~vkri~V~pG~~lSlq~H~~R~E~W~Vv~G~a~v~~----~~~~~~~~~g~sv~Ip~g~~H~i~n~g-~~~L~~IEVq 136 (151)
T PF01050_consen 62 GYKVKRITVNPGKRLSLQYHHHRSEHWTVVSGTAEVTL----DDEEFTLKEGDSVYIPRGAKHRIENPG-KTPLEIIEVQ 136 (151)
T ss_pred CEEEEEEEEcCCCccceeeecccccEEEEEeCeEEEEE----CCEEEEEcCCCEEEECCCCEEEEECCC-CcCcEEEEEe
Confidence 466666677999988777 7889999999999999997 457899999999999999999999998 5788877654
Q ss_pred c
Q 039441 279 Q 279 (539)
Q Consensus 279 d 279 (539)
.
T Consensus 137 ~ 137 (151)
T PF01050_consen 137 T 137 (151)
T ss_pred c
Confidence 3
No 36
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=98.19 E-value=7.1e-06 Score=90.00 Aligned_cols=76 Identities=16% Similarity=0.312 Sum_probs=63.8
Q ss_pred ceeeEEEeeeCCCeeeccc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441 199 DNYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL 277 (539)
Q Consensus 199 ~~~Rl~il~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l 277 (539)
.++-+.++++.|++-.-+| |+...+++||++|++.+.+ .-+++.|++||.++||+|++|.|.|.+ +++++++.+
T Consensus 374 ~~~~~~~~~i~PG~~~~~h~H~~~~E~~~Vl~G~~~v~~----dg~~~~l~~GDsi~ip~~~~H~~~N~g-~~~~~~i~v 448 (468)
T TIGR01479 374 DRYQVKRITVKPGEKLSLQMHHHRAEHWIVVSGTARVTI----GDETLLLTENESTYIPLGVIHRLENPG-KIPLELIEV 448 (468)
T ss_pred CCEEEEEEEECCCCccCccccCCCceEEEEEeeEEEEEE----CCEEEEecCCCEEEECCCCcEEEEcCC-CCCEEEEEE
Confidence 4677788888999865444 6667788899999999986 236789999999999999999999999 588999888
Q ss_pred ec
Q 039441 278 LQ 279 (539)
Q Consensus 278 ~d 279 (539)
..
T Consensus 449 ~~ 450 (468)
T TIGR01479 449 QS 450 (468)
T ss_pred Ec
Confidence 75
No 37
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=98.16 E-value=0.00021 Score=70.38 Aligned_cols=211 Identities=16% Similarity=0.225 Sum_probs=130.3
Q ss_pred eEEEeeccCccc-cc----ccCcc-eeeEEEeeeCCCeeec-cc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcE
Q 039441 181 HMRVLQRFSQKS-HL----LRGID-NYRLAILEANPSTLVV-PH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDV 252 (539)
Q Consensus 181 ~i~vl~~f~~~s-~~----l~gv~-~~Rl~il~l~P~~l~l-Ph-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV 252 (539)
...+|+.|+.-. -. +-|++ -+---|+++.|+|--- |- =-.|..++||++|+..+++ .-+++.|++|+-
T Consensus 35 Vts~Lp~w~~tr~wilsrP~~Gf~~tF~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~----~G~th~l~eggy 110 (264)
T COG3257 35 VTSILPFWENTRAWILSRPLSGFAATFVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKA----EGKTHALREGGY 110 (264)
T ss_pred EEeecCCCCCceEEEEeccccchhhhhhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEE----cCeEEEeccCCe
Confidence 456677777533 11 22421 2223367889988554 33 2478899999999988876 336899999999
Q ss_pred EEeCCCCeEEEEecCCCceEEEEEEeccCCCCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCC
Q 039441 253 ISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRK 332 (539)
Q Consensus 253 ~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~ 332 (539)
.++|+|+-+-+.|.. .++.+|-.+-..- ..|. + +. .|..- .+......++.+.
T Consensus 111 aylPpgs~~~~~N~~-~~~~rfhw~rk~Y----------------~~Vd-G-~~--~P~~~---~~Ne~ei~~~~m~--- 163 (264)
T COG3257 111 AYLPPGSGWTLRNAQ-KEDSRFHWIRKRY----------------QPVE-G-VQ--APELV---SGNESEIEPSPME--- 163 (264)
T ss_pred EEeCCCCcceEeecc-CCceEEEEEeecc----------------eeec-C-cc--CCcce---ecChhhCCCCCCC---
Confidence 999999999999986 3444443322210 0010 0 00 00000 0000000111111
Q ss_pred CcccCCCceEEEeCCcccccccccceeEEEEEEcCCcee---cceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhh
Q 039441 333 PIYNNNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMM---VPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQRE 409 (539)
Q Consensus 333 p~~sn~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~---~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g 409 (539)
..++-+.+.++++++ ..||.|..+++.|||.. +-|+- .-=+||++|+|.-.+=..
T Consensus 164 ---gtdg~~attv~P~d~----r~Dmhv~ivsFePGa~ip~aEtHvm---EHGlyvLeGk~vYrLn~d------------ 221 (264)
T COG3257 164 ---GTDGVIATTVLPKEL----RFDMHVHIVSFEPGASIPYAETHVM---EHGLYVLEGKGVYRLNNN------------ 221 (264)
T ss_pred ---CCCCeEEEeeCcccc----CcceEEEEEEecCCcccchhhhhhh---hcceEEEecceEEeecCc------------
Confidence 122334556666654 45899999999999974 23331 234799999996543221
Q ss_pred hhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEee
Q 039441 410 QQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSL 461 (539)
Q Consensus 410 ~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~ 461 (539)
-..|++||.+.+=|..|-+-++.|...+.+|-.++
T Consensus 222 -----------------wv~V~aGD~mwm~A~cpQacyagG~g~frYLlyKD 256 (264)
T COG3257 222 -----------------WVPVEAGDYIWMGAYCPQACYAGGRGAFRYLLYKD 256 (264)
T ss_pred -----------------eEEeecccEEEeeccChhhhccCCCCceEEEEEec
Confidence 14799999999999999999999887788876543
No 38
>PRK09943 DNA-binding transcriptional repressor PuuR; Provisional
Probab=98.15 E-value=1.3e-05 Score=77.13 Aligned_cols=76 Identities=16% Similarity=0.216 Sum_probs=61.3
Q ss_pred ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441 357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF 436 (539)
Q Consensus 357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~ 436 (539)
.+.+..+.+.||+-..+++|....|++||++|++.+.+-. +. ..|.+||.+
T Consensus 106 ~~~~~~~~~~pg~~~~~~~~h~~~E~~~Vl~G~~~~~~~~---------------------------~~--~~l~~Gd~~ 156 (185)
T PRK09943 106 TLAMIFETYQPGTTTGERIKHQGEEIGTVLEGEIVLTING---------------------------QD--YHLVAGQSY 156 (185)
T ss_pred eeEEEEEEccCCCCcccccccCCcEEEEEEEeEEEEEECC---------------------------EE--EEecCCCEE
Confidence 4566677899999765444346799999999999987622 12 579999999
Q ss_pred EeCCCCeEEEEcCCCCcEEEEEEee
Q 039441 437 IIPPGHPIALVASPNEKLLTVGFSL 461 (539)
Q Consensus 437 vVPaG~~h~i~n~gne~l~~v~F~~ 461 (539)
+||++.+|.+.|.+++++.++.+.+
T Consensus 157 ~~~~~~~H~~~n~~~~~~~~l~~~~ 181 (185)
T PRK09943 157 AINTGIPHSFSNTSAGICRIISAHT 181 (185)
T ss_pred EEcCCCCeeeeCCCCCCeEEEEEeC
Confidence 9999999999999999999988654
No 39
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=98.14 E-value=1.5e-05 Score=71.66 Aligned_cols=81 Identities=25% Similarity=0.336 Sum_probs=68.2
Q ss_pred ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441 357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF 436 (539)
Q Consensus 357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~ 436 (539)
+|-+..|+|.||+-.--|.|-+-...+||++|++.+-.-+- --+...+.+||.|
T Consensus 45 ~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~G~r--------------------------LE~ha~~~pGDf~ 98 (142)
T COG4101 45 GICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWYGNR--------------------------LEEHAEVGPGDFF 98 (142)
T ss_pred eeeEEEEeeCCCccccccccccccEEEEEEeceeeeeeccc--------------------------eeeeEEecCCCeE
Confidence 57788999999999999999889999999999998754332 1345789999999
Q ss_pred EeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441 437 IIPPGHPIALVASPNEKLLTVGFSLNA 463 (539)
Q Consensus 437 vVPaG~~h~i~n~gne~l~~v~F~~na 463 (539)
+||+|.||--+|.+++++..|...+..
T Consensus 99 YiPpgVPHqp~N~S~ep~s~vIaRsDp 125 (142)
T COG4101 99 YIPPGVPHQPANLSTEPLSAVIARSDP 125 (142)
T ss_pred EcCCCCCCcccccCCCCeEEEEEccCC
Confidence 999999999999889998887655443
No 40
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=98.10 E-value=1.3e-05 Score=88.16 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=73.2
Q ss_pred CceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHh
Q 039441 339 FGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEE 418 (539)
Q Consensus 339 ~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~ 418 (539)
.|+...++. +.++.+.+++|.||+-..+|+|....|+.||++|++.+++=..
T Consensus 373 WG~~~~l~~-------g~~~~v~~i~v~PG~~~~~~~H~~~~E~~~VlsG~~~v~idg~--------------------- 424 (478)
T PRK15460 373 WGKYDSIDA-------GDRYQVKRITVKPGEGLSVQMHHHRAEHWVVVAGTAKVTIDGD--------------------- 424 (478)
T ss_pred CCceEeecC-------CCcEEEEEEEECCCCcCCcCCCCCCceEEEEEeeEEEEEECCE---------------------
Confidence 576554432 3357889999999997777888888899999999999877542
Q ss_pred hhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441 419 SSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFSLNA 463 (539)
Q Consensus 419 ~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~~na 463 (539)
+..|.+||.++||+|.+|.+.|.|++++++|++-+.+
T Consensus 425 --------~~~L~~GDSi~ip~g~~H~~~N~g~~~l~iI~V~~g~ 461 (478)
T PRK15460 425 --------IKLLGENESIYIPLGATHCLENPGKIPLDLIEVRSGS 461 (478)
T ss_pred --------EEEecCCCEEEECCCCcEEEEcCCCCCEEEEEEEcCC
Confidence 2579999999999999999999999999999876543
No 41
>PRK11171 hypothetical protein; Provisional
Probab=98.09 E-value=2e-05 Score=80.51 Aligned_cols=76 Identities=22% Similarity=0.210 Sum_probs=63.3
Q ss_pred eeEEEeeeCCCeeecc-cccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441 201 YRLAILEANPSTLVVP-HHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ 279 (539)
Q Consensus 201 ~Rl~il~l~P~~l~lP-h~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d 279 (539)
+-+.+++|+|++-+-. |++...+.+||++|++++.+ +.+.+.|.+||+++||++++||+.|.| ++.++++..=|
T Consensus 184 ~~~~~~~l~PG~~~~~~~~~~~ee~i~Vl~G~~~~~~----~~~~~~l~~GD~i~~~~~~~h~~~N~g-~~~~~yl~~k~ 258 (266)
T PRK11171 184 MHVNIVTFEPGASIPFVETHVMEHGLYVLEGKGVYRL----NNDWVEVEAGDFIWMRAYCPQACYAGG-PGPFRYLLYKD 258 (266)
T ss_pred cEEEEEEECCCCEEccCcCCCceEEEEEEeCEEEEEE----CCEEEEeCCCCEEEECCCCCEEEECCC-CCcEEEEEEcc
Confidence 4566688899987765 58899999999999999976 357899999999999999999999998 58887666444
Q ss_pred cCC
Q 039441 280 PVN 282 (539)
Q Consensus 280 ~~n 282 (539)
+|
T Consensus 259 -~n 260 (266)
T PRK11171 259 -VN 260 (266)
T ss_pred -cc
Confidence 44
No 42
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=98.05 E-value=1.6e-05 Score=75.41 Aligned_cols=67 Identities=21% Similarity=0.331 Sum_probs=52.7
Q ss_pred eeecccccCCCcEEEEEeceEEEEEEeCCCcee-eecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441 212 TLVVPHHSDAETILVLLKGKGVITLVSHERRES-FNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ 279 (539)
Q Consensus 212 ~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~-~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d 279 (539)
.|+..|.|+.+++-||+.|+|...+-..+.... ..+++||+|.||||+.||+.=+ .+..++++=+|.
T Consensus 83 ~f~~EH~H~deEvR~i~~G~g~Fdvr~~~~~wiri~~e~GDli~vP~g~~HrF~~~-~~~~i~aiRlF~ 150 (157)
T PF03079_consen 83 KFFEEHTHEDEEVRYIVDGSGYFDVRDGDDVWIRILCEKGDLIVVPAGTYHRFTLG-ESPYIKAIRLFK 150 (157)
T ss_dssp HHCS-EEESS-EEEEEEECEEEEEEE-TTCEEEEEEEETTCEEEE-TT--EEEEES-TTSSEEEEEEES
T ss_pred hhheeEecChheEEEEeCcEEEEEEEcCCCEEEEEEEcCCCEEecCCCCceeEEcC-CCCcEEEEEeec
Confidence 466789899999999999999999998888876 8999999999999999999854 467787777775
No 43
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=98.01 E-value=1.6e-05 Score=76.42 Aligned_cols=73 Identities=12% Similarity=0.256 Sum_probs=58.1
Q ss_pred CCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCCCC
Q 039441 209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNTPG 285 (539)
Q Consensus 209 ~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~pg 285 (539)
-||.=.--|+..+++|+|+++|...|.+++.|......|++||+|.||+|++|..+...+ .+++++.+...+|
T Consensus 42 Gpn~r~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~fllP~gvpHsP~r~~~----tv~LviE~~r~~~ 114 (177)
T PRK13264 42 GPNARTDFHYDPGEEFFYQLEGDMYLKVQEDGKRRDVPIREGEMFLLPPHVPHSPQREAG----SIGLVIERKRPEG 114 (177)
T ss_pred cCCcccccccCCCceEEEEECCeEEEEEEcCCceeeEEECCCCEEEeCCCCCcCCccCCC----eEEEEEEeCCCCC
Confidence 566555558889999999999999999999887789999999999999999999998542 2344454444333
No 44
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=97.97 E-value=1.7e-05 Score=72.89 Aligned_cols=61 Identities=26% Similarity=0.461 Sum_probs=51.6
Q ss_pred cceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCC
Q 039441 372 VPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPN 451 (539)
Q Consensus 372 ~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gn 451 (539)
--|||++|+|++.|++|++.++|-.++|. . -.|..|||++||+|..|....+ .
T Consensus 57 yHHYHs~aHEVl~vlrgqA~l~iGG~~G~------------------------e--l~v~~GDvlliPAGvGH~rl~s-S 109 (163)
T COG4297 57 YHHYHSGAHEVLGVLRGQAGLQIGGADGQ------------------------E--LEVGEGDVLLIPAGVGHCRLHS-S 109 (163)
T ss_pred cccccCCcceEEEEecceeEEEecCCCCc------------------------e--eeecCCCEEEEecCcccccccC-C
Confidence 35899999999999999999999999873 2 3699999999999999997665 4
Q ss_pred CcEEEEEE
Q 039441 452 EKLLTVGF 459 (539)
Q Consensus 452 e~l~~v~F 459 (539)
-++.+|+-
T Consensus 110 ~DF~VvGa 117 (163)
T COG4297 110 ADFQVVGA 117 (163)
T ss_pred CCeEEEcc
Confidence 56777753
No 45
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=97.89 E-value=3.9e-05 Score=72.64 Aligned_cols=60 Identities=18% Similarity=0.311 Sum_probs=51.0
Q ss_pred CCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441 209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN 268 (539)
Q Consensus 209 ~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~ 268 (539)
-||+=.--|..++++|+||++|...|-+++.+......|++||++.||+|++|..+...+
T Consensus 36 Gpn~R~d~H~~~tdE~FyqleG~~~l~v~d~g~~~~v~L~eGd~flvP~gvpHsP~r~~~ 95 (159)
T TIGR03037 36 GPNARTDFHDDPGEEFFYQLKGEMYLKVTEEGKREDVPIREGDIFLLPPHVPHSPQRPAG 95 (159)
T ss_pred CCCCCcccccCCCceEEEEEcceEEEEEEcCCcEEEEEECCCCEEEeCCCCCcccccCCC
Confidence 444444445567999999999999999999887789999999999999999999998653
No 46
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=97.87 E-value=9.6e-05 Score=68.92 Aligned_cols=85 Identities=20% Similarity=0.382 Sum_probs=54.1
Q ss_pred ccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeC-----CCceeeecCCCcEEEeCCCCeEEEEecCCC
Q 039441 195 LRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSH-----ERRESFNMEHGDVISVPAGTTYYLSNQDNV 269 (539)
Q Consensus 195 l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~p-----g~~~~~~v~~GDV~~iPaG~~h~i~N~g~~ 269 (539)
+-|+..+-+-+-++.||+---+|-|...+|++|++|+|++=+-.. |.+..+.+-+++.+.||.+.+|-+.|+++.
T Consensus 38 ~hGmkevEVwlQTfAPG~~TPiHRHsCEEVFvVLkG~GTl~l~~~~~~~pG~pqef~~~pnSTf~IPvn~~HQv~NT~e~ 117 (167)
T PF02041_consen 38 LHGMKEVEVWLQTFAPGSATPIHRHSCEEVFVVLKGSGTLYLASSHEKYPGKPQEFPIFPNSTFHIPVNDAHQVWNTNEH 117 (167)
T ss_dssp HH--SSEEEEEEEE-TT-B--EEEESS-EEEEEEE--EEEEE--SSSSS--S-EEEEE-TTEEEEE-TT--EEEE---SS
T ss_pred hcCceeeeEEeeeecCCCCCCCccccccEEEEEEecceEEEEecccccCCCCceEEEecCCCeEEeCCCCcceeecCCCC
Confidence 345555555555669999999999999999999999998877754 567899999999999999999999999988
Q ss_pred ceEEEEEEec
Q 039441 270 DRLHVAKLLQ 279 (539)
Q Consensus 270 e~L~iv~l~d 279 (539)
++|.++.+..
T Consensus 118 eDlqvlViiS 127 (167)
T PF02041_consen 118 EDLQVLVIIS 127 (167)
T ss_dssp S-EEEEEEEE
T ss_pred cceEEEEEec
Confidence 9999888775
No 47
>PF03079 ARD: ARD/ARD' family; InterPro: IPR004313 The two acireductone dioxygenase enzymes (ARD and ARD', previously known as E-2 and E-2') from Klebsiella pneumoniae share the same amino acid sequence Q9ZFE7 from SWISSPROT, but bind different metal ions: ARD binds Ni2+, ARD' binds Fe2+ []. ARD and ARD' can be experimentally interconverted by removal of the bound metal ion and reconstitution with the appropriate metal ion. The two enzymes share the same substrate, 1,2-dihydroxy-3-keto-5-(methylthio)pentene, but yield different products. ARD' yields the alpha-keto precursor of methionine (and formate), thus forming part of the ubiquitous methionine salvage pathway that converts 5'-methylthioadenosine (MTA) to methionine. This pathway is responsible for the tight control of the concentration of MTA, which is a powerful inhibitor of polyamine biosynthesis and transmethylation reactions []. ARD yields methylthiopropanoate, carbon monoxide and formate, and thus prevents the conversion of MTA to methionine. The role of the ARD catalysed reaction is unclear: methylthiopropanoate is cytotoxic, and carbon monoxide can activate guanylyl cyclase, leading to increased intracellular cGMP levels [, ]. This family also contains other proteins, whose functions are not well characterised.; GO: 0010309 acireductone dioxygenase [iron(II)-requiring] activity, 0055114 oxidation-reduction process; PDB: 1VR3_A 1ZRR_A 2HJI_A.
Probab=97.75 E-value=0.00019 Score=68.14 Aligned_cols=70 Identities=13% Similarity=0.232 Sum_probs=53.2
Q ss_pred ceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEc
Q 039441 369 GMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVA 448 (539)
Q Consensus 369 gm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n 448 (539)
-+...|.| ...+|-|++.|+|.+.|...+. .-++-.+.+||+++||+|..||..-
T Consensus 83 ~f~~EH~H-~deEvR~i~~G~g~Fdvr~~~~------------------------~wiri~~e~GDli~vP~g~~HrF~~ 137 (157)
T PF03079_consen 83 KFFEEHTH-EDEEVRYIVDGSGYFDVRDGDD------------------------VWIRILCEKGDLIVVPAGTYHRFTL 137 (157)
T ss_dssp HHCS-EEE-SS-EEEEEEECEEEEEEE-TTC------------------------EEEEEEEETTCEEEE-TT--EEEEE
T ss_pred hhheeEec-ChheEEEEeCcEEEEEEEcCCC------------------------EEEEEEEcCCCEEecCCCCceeEEc
Confidence 45689999 6689999999999999998764 3455689999999999999999988
Q ss_pred CCCCcEEEEEEeecC
Q 039441 449 SPNEKLLTVGFSLNA 463 (539)
Q Consensus 449 ~gne~l~~v~F~~na 463 (539)
+.+..+..+=|+.++
T Consensus 138 ~~~~~i~aiRlF~~~ 152 (157)
T PF03079_consen 138 GESPYIKAIRLFKDE 152 (157)
T ss_dssp STTSSEEEEEEESSC
T ss_pred CCCCcEEEEEeecCC
Confidence 877778888776554
No 48
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=97.71 E-value=0.00021 Score=61.19 Aligned_cols=70 Identities=24% Similarity=0.441 Sum_probs=52.3
Q ss_pred eeEEEeeeCCCeeecccc-cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEE
Q 039441 201 YRLAILEANPSTLVVPHH-SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVA 275 (539)
Q Consensus 201 ~Rl~il~l~P~~l~lPh~-~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv 275 (539)
+--.+|+|.|++.--|.. .+.-.++||++|...|++ ...++.+.+||+|.||+|-.+.|.|.+ +++.++.
T Consensus 12 fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti----~~~~f~v~~G~~F~VP~gN~Y~i~N~~-~~~a~Lf 82 (85)
T PF11699_consen 12 FASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTI----HETSFVVTKGGSFQVPRGNYYSIKNIG-NEEAKLF 82 (85)
T ss_dssp -EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEE----TTEEEEEETT-EEEE-TT-EEEEEE-S-SS-EEEE
T ss_pred ceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEE----cCcEEEEeCCCEEEECCCCEEEEEECC-CCcEEEE
Confidence 345677889999999887 577788999999999998 346899999999999999999999998 4555543
No 49
>PF02041 Auxin_BP: Auxin binding protein; InterPro: IPR000526 Auxin binding protein is located in the lumen of the endoplasmic reticulum (ER). The primary structure contains an N-terminal hydrophobic leader sequence of 30-40 amino acids, which could represent a signal for translocation of the protein to the ER [, ]. The mature protein comprises around 165 residues, and contains a number of potential N-glycosylation sites. In vitro transport studies have demonstrated co-translational glycosylation []. Retention within the lumen of the ER correlates with an additional signal located at the C terminus, represented by the sequence Lys-Asp-Glu-Leu, known to be responsible for preventing secretion of proteins from the lumen of the ER in eukaryotic cells [, ].; GO: 0004872 receptor activity, 0005788 endoplasmic reticulum lumen; PDB: 1LR5_D 1LRH_D.
Probab=97.68 E-value=0.00074 Score=63.12 Aligned_cols=98 Identities=14% Similarity=0.206 Sum_probs=58.3
Q ss_pred cccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEee
Q 039441 350 YQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISAN 429 (539)
Q Consensus 350 fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~ 429 (539)
+..++. +.|-+-+|.||+-..+|=| ...+|+||++|+|..-+..++..- .| +.-.+.
T Consensus 38 ~hGmke--vEVwlQTfAPG~~TPiHRH-sCEEVFvVLkG~GTl~l~~~~~~~------pG--------------~pqef~ 94 (167)
T PF02041_consen 38 LHGMKE--VEVWLQTFAPGSATPIHRH-SCEEVFVVLKGSGTLYLASSHEKY------PG--------------KPQEFP 94 (167)
T ss_dssp HH--SS--EEEEEEEE-TT-B--EEEE-SS-EEEEEEE--EEEEE--SSSSS----------------------S-EEEE
T ss_pred hcCcee--eeEEeeeecCCCCCCCccc-cccEEEEEEecceEEEEecccccC------CC--------------CceEEE
Confidence 345555 7899999999999999999 789999999999999998665321 01 123467
Q ss_pred eCCCcEEEeCCCCeEEEEcCC-CCcEEEEEEeecCCCCcccccc
Q 039441 430 LSPGVVFIIPPGHPIALVASP-NEKLLTVGFSLNARNNQRNFLA 472 (539)
Q Consensus 430 L~~GDV~vVPaG~~h~i~n~g-ne~l~~v~F~~na~n~~~~fLA 472 (539)
+-+++.|.||.+-+|-+.|++ .++|.+|.+... -+...|+.
T Consensus 95 ~~pnSTf~IPvn~~HQv~NT~e~eDlqvlViiSr--pPvkvf~y 136 (167)
T PF02041_consen 95 IFPNSTFHIPVNDAHQVWNTNEHEDLQVLVIISR--PPVKVFIY 136 (167)
T ss_dssp E-TTEEEEE-TT--EEEE---SSS-EEEEEEEES--SS--EEEE
T ss_pred ecCCCeEEeCCCCcceeecCCCCcceEEEEEecC--CCeEEEEe
Confidence 999999999999999999997 588999876544 34555553
No 50
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=97.67 E-value=0.00013 Score=63.81 Aligned_cols=67 Identities=27% Similarity=0.484 Sum_probs=45.5
Q ss_pred CCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEE
Q 039441 367 QGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIAL 446 (539)
Q Consensus 367 pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i 446 (539)
++-.+.|||| +-.+|.||++|.+.+.+ .. +. ..|++||+++||+|.+|..
T Consensus 12 ~~~~~~~h~h-~~~~i~~v~~G~~~~~~-~~--------------------------~~--~~l~~g~~~li~p~~~H~~ 61 (136)
T PF02311_consen 12 PNFEFPPHWH-DFYEIIYVLSGEGTLHI-DG--------------------------QE--YPLKPGDLFLIPPGQPHSY 61 (136)
T ss_dssp TT-SEEEETT--SEEEEEEEEE-EEEEE-TT--------------------------EE--EEE-TT-EEEE-TTS-EEE
T ss_pred CCCccCCEEC-CCEEEEEEeCCEEEEEE-CC--------------------------EE--EEEECCEEEEecCCccEEE
Confidence 5566789999 68999999999999843 22 12 5799999999999999999
Q ss_pred EcCCCCcEEEEEEeecC
Q 039441 447 VASPNEKLLTVGFSLNA 463 (539)
Q Consensus 447 ~n~gne~l~~v~F~~na 463 (539)
...++.++.++.+....
T Consensus 62 ~~~~~~~~~~~~i~~~~ 78 (136)
T PF02311_consen 62 YPDSNEPWEYYWIYFSP 78 (136)
T ss_dssp EE-TTSEEEEEEEEE--
T ss_pred ecCCCCCEEEEEEEECH
Confidence 99876677766655443
No 51
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=97.62 E-value=0.00022 Score=69.13 Aligned_cols=79 Identities=24% Similarity=0.313 Sum_probs=52.6
Q ss_pred eeeEEEeeeCCCeee------cccc-------cCCCcEEEEEeceEEEEEEeCCC----c-eeeecCCCcEEEeCCCCeE
Q 039441 200 NYRLAILEANPSTLV------VPHH-------SDAETILVLLKGKGVITLVSHER----R-ESFNMEHGDVISVPAGTTY 261 (539)
Q Consensus 200 ~~Rl~il~l~P~~l~------lPh~-------~dA~~~~yV~~G~g~i~~v~pg~----~-~~~~v~~GDV~~iPaG~~h 261 (539)
+.+..|..|.|+.+= --|| .+.+++.+|++|+|++=+-.++. . ....+.+||++.||+|.+|
T Consensus 49 ~L~ygiTvi~Pg~vG~E~~~T~GH~H~~~~~~~~~pEvY~vl~G~g~~lLq~~~~~~~~~~~~v~~~~G~~v~IPp~yaH 128 (182)
T PF06560_consen 49 NLRYGITVIPPGKVGGEYFMTKGHYHPISPCGLSYPEVYEVLSGEGLILLQKEEGDDVGDVIAVEAKPGDVVYIPPGYAH 128 (182)
T ss_dssp -EEEEEEEE---EETTEE-B---BB-SS----TT--EEEEEEESSEEEEEE-TTS-----EEEEEE-TTEEEEE-TT-EE
T ss_pred eEEeeeEEEcCcccCCccccCCCccCCccccCCCCCcEEEEEeCEEEEEEEecCCCcceeEEEEEeCCCCEEEECCCceE
Confidence 355666667888752 1343 34799999999999999998876 2 2568899999999999999
Q ss_pred EEEecCCCceEEEEEEec
Q 039441 262 YLSNQDNVDRLHVAKLLQ 279 (539)
Q Consensus 262 ~i~N~g~~e~L~iv~l~d 279 (539)
-++|+| +++|+++++..
T Consensus 129 ~tIN~g-~~~L~~~~~~~ 145 (182)
T PF06560_consen 129 RTINTG-DEPLVFAAWVP 145 (182)
T ss_dssp EEEE-S-SS-EEEEEEEE
T ss_pred EEEECC-CCcEEEEEEEe
Confidence 999999 68999888876
No 52
>COG4101 Predicted mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=97.61 E-value=0.00028 Score=63.55 Aligned_cols=79 Identities=20% Similarity=0.319 Sum_probs=63.1
Q ss_pred CcceeeEEEeeeCCCeeeccc-ccCCCcEEEEEeceEEEEEEeCCCc--eeeecCCCcEEEeCCCCeEEEEecCCCceEE
Q 039441 197 GIDNYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERR--ESFNMEHGDVISVPAGTTYYLSNQDNVDRLH 273 (539)
Q Consensus 197 gv~~~Rl~il~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~~--~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~ 273 (539)
|-+..-+.+++|.|++=.=-| |-+-...+||++|++.+=+ |.+ +...+.+||.++||+|++|-=+|.. ++.|.
T Consensus 42 Gas~i~~~~vTi~pgAkakaH~H~~hEtaIYvlsG~ah~w~---G~rLE~ha~~~pGDf~YiPpgVPHqp~N~S-~ep~s 117 (142)
T COG4101 42 GASGICMHLVTIPPGAKAKAHLHEEHETAIYVLSGEAHTWY---GNRLEEHAEVGPGDFFYIPPGVPHQPANLS-TEPLS 117 (142)
T ss_pred ccceeeEEEEeeCCCccccccccccccEEEEEEeceeeeee---ccceeeeEEecCCCeEEcCCCCCCcccccC-CCCeE
Confidence 556677788899999988766 6788889999999987655 332 4567899999999999999999998 68886
Q ss_pred EEEEec
Q 039441 274 VAKLLQ 279 (539)
Q Consensus 274 iv~l~d 279 (539)
.+....
T Consensus 118 ~vIaRs 123 (142)
T COG4101 118 AVIARS 123 (142)
T ss_pred EEEEcc
Confidence 555443
No 53
>PF11699 CENP-C_C: Mif2/CENP-C like; PDB: 2VPV_B.
Probab=97.60 E-value=0.0003 Score=60.18 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=54.5
Q ss_pred ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441 357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF 436 (539)
Q Consensus 357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~ 436 (539)
.++...+.|.||+.-.|-..-+.+-+.||++|...|+|-.. ++.+.+|++|
T Consensus 11 ~fa~G~l~Lpp~~~K~~k~s~~~~~vF~V~~G~v~Vti~~~-----------------------------~f~v~~G~~F 61 (85)
T PF11699_consen 11 FFASGMLELPPGGEKPPKNSRDNTMVFYVIKGKVEVTIHET-----------------------------SFVVTKGGSF 61 (85)
T ss_dssp S-EEEEEEE-TCCCEEEEE--SEEEEEEEEESEEEEEETTE-----------------------------EEEEETT-EE
T ss_pred CceeEEEEeCCCCccCCcccCCcEEEEEEEeCEEEEEEcCc-----------------------------EEEEeCCCEE
Confidence 48899999999999888877778999999999999988443 2569999999
Q ss_pred EeCCCCeEEEEcCCCCcEEEE
Q 039441 437 IIPPGHPIALVASPNEKLLTV 457 (539)
Q Consensus 437 vVPaG~~h~i~n~gne~l~~v 457 (539)
.||+|-...+.|.++++..++
T Consensus 62 ~VP~gN~Y~i~N~~~~~a~Lf 82 (85)
T PF11699_consen 62 QVPRGNYYSIKNIGNEEAKLF 82 (85)
T ss_dssp EE-TT-EEEEEE-SSS-EEEE
T ss_pred EECCCCEEEEEECCCCcEEEE
Confidence 999999999999988776654
No 54
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=97.58 E-value=0.00036 Score=69.63 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=57.8
Q ss_pred ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441 199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL 278 (539)
Q Consensus 199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~ 278 (539)
..+...+|+++-.+ .|++++.+++.||++|+..+++ ...++.+.+||+++||+|+.|.+.+.+ ..++++++
T Consensus 155 s~m~aGf~~~~~~s--f~wtl~~dEi~YVLEGe~~l~I----dG~t~~l~pGDvlfIPkGs~~hf~tp~---~aRflyV~ 225 (233)
T PRK15457 155 SSMAAGFMQWENAF--FPWTLNYDEIDMVLEGELHVRH----EGETMIAKAGDVMFIPKGSSIEFGTPS---SVRFLYVA 225 (233)
T ss_pred CceeeEEEEEecCc--cceeccceEEEEEEEeEEEEEE----CCEEEEeCCCcEEEECCCCeEEecCCC---CeeEEEEE
Confidence 45666777788644 5688999999999999999998 367999999999999999995554443 45555555
Q ss_pred ccCC
Q 039441 279 QPVN 282 (539)
Q Consensus 279 d~~n 282 (539)
-+.|
T Consensus 226 ~Pa~ 229 (233)
T PRK15457 226 WPAN 229 (233)
T ss_pred ecCc
Confidence 5443
No 55
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.52 E-value=0.00037 Score=66.41 Aligned_cols=67 Identities=19% Similarity=0.438 Sum_probs=56.4
Q ss_pred eeecccccCCCcEEEEEeceEEEEEEeCCCce-eeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441 212 TLVVPHHSDAETILVLLKGKGVITLVSHERRE-SFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ 279 (539)
Q Consensus 212 ~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~-~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d 279 (539)
.|+.=|+|.++++.|++.|.|+.++..++++. .-.+.+||+|.||+|+-||+-=+- +..++.+-+|.
T Consensus 86 kF~~EH~H~d~EvRy~vaG~GiF~v~~~d~~~~~i~c~~gDLI~vP~gi~HwFtlt~-~~~f~AvRlF~ 153 (181)
T COG1791 86 KFLQEHLHTDDEVRYFVAGEGIFDVHSPDGKVYQIRCEKGDLISVPPGIYHWFTLTE-SPNFKAVRLFT 153 (181)
T ss_pred HHHHHhccCCceEEEEEecceEEEEECCCCcEEEEEEccCCEEecCCCceEEEEccC-CCcEEEEEEee
Confidence 36667889999999999999999999999765 567888999999999999998765 45566666665
No 56
>PF02311 AraC_binding: AraC-like ligand binding domain; InterPro: IPR003313 This entry defines the arabinose-binding and dimerisation domain of the bacterial gene regulatory protein AraC. The crystal structure of the arabinose-binding and dimerization domain of the Escherichia coli gene regulatory protein AraC was determined in the presence and absence of L-arabinose. The arabinose-bound molecule shows that the protein adopts an unusual fold, binding sugar within a beta barrel and completely burying the arabinose with the amino-terminal arm of the protein. Dimer contacts in the presence of arabinose are mediated by an antiparallel coiled-coil. In the uncomplexed protein, the amino-terminal arm is disordered, uncovering the sugar-binding pocket and allowing it to serve as an oligomerization interface [].; GO: 0006355 regulation of transcription, DNA-dependent; PDB: 1XJA_B 2ARA_A 2AAC_B 2ARC_A.
Probab=97.49 E-value=0.00078 Score=58.91 Aligned_cols=65 Identities=20% Similarity=0.390 Sum_probs=46.5
Q ss_pred CCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441 210 PSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ 279 (539)
Q Consensus 210 P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d 279 (539)
|+-..-|||++--+|.||++|.|++.+ ....+.|++||++.||+|.+|.+...++ .++..+.+.-
T Consensus 12 ~~~~~~~h~h~~~~i~~v~~G~~~~~~----~~~~~~l~~g~~~li~p~~~H~~~~~~~-~~~~~~~i~~ 76 (136)
T PF02311_consen 12 PNFEFPPHWHDFYEIIYVLSGEGTLHI----DGQEYPLKPGDLFLIPPGQPHSYYPDSN-EPWEYYWIYF 76 (136)
T ss_dssp TT-SEEEETT-SEEEEEEEEE-EEEEE----TTEEEEE-TT-EEEE-TTS-EEEEE-TT-SEEEEEEEEE
T ss_pred CCCccCCEECCCEEEEEEeCCEEEEEE----CCEEEEEECCEEEEecCCccEEEecCCC-CCEEEEEEEE
Confidence 556667999999999999999999865 3467999999999999999999999873 4666555554
No 57
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.47 E-value=0.00031 Score=58.23 Aligned_cols=60 Identities=22% Similarity=0.338 Sum_probs=46.9
Q ss_pred eeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEe
Q 039441 201 YRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSN 265 (539)
Q Consensus 201 ~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N 265 (539)
+...+.+..|+.+..+ ...++++||++|++.|+.- .-.+..|++||+++||+|+..-|.-
T Consensus 7 ~~~g~w~~~pg~~~~~--~~~~E~~~vleG~v~it~~---~G~~~~~~aGD~~~~p~G~~~~w~v 66 (74)
T PF05899_consen 7 FSAGVWECTPGKFPWP--YPEDEFFYVLEGEVTITDE---DGETVTFKAGDAFFLPKGWTGTWEV 66 (74)
T ss_dssp EEEEEEEEECEEEEEE--ESSEEEEEEEEEEEEEEET---TTEEEEEETTEEEEE-TTEEEEEEE
T ss_pred EEEEEEEECCceeEee--CCCCEEEEEEEeEEEEEEC---CCCEEEEcCCcEEEECCCCEEEEEE
Confidence 4566778899886655 3449999999999999843 4567999999999999999776543
No 58
>PRK13264 3-hydroxyanthranilate 3,4-dioxygenase; Provisional
Probab=97.43 E-value=0.00055 Score=65.98 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=48.8
Q ss_pred cCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEE
Q 039441 366 NQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIA 445 (539)
Q Consensus 366 ~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~ 445 (539)
-||.-..-|+| .+.++.|+++|...+.|++.+ +.-+..|++||+|+||+|.+|.
T Consensus 42 Gpn~r~d~H~~-~tdE~FyqleG~~~l~v~d~g-------------------------~~~~v~L~eGd~fllP~gvpHs 95 (177)
T PRK13264 42 GPNARTDFHYD-PGEEFFYQLEGDMYLKVQEDG-------------------------KRRDVPIREGEMFLLPPHVPHS 95 (177)
T ss_pred cCCcccccccC-CCceEEEEECCeEEEEEEcCC-------------------------ceeeEEECCCCEEEeCCCCCcC
Confidence 46766677998 589999999999999999853 2234689999999999999999
Q ss_pred EEcC
Q 039441 446 LVAS 449 (539)
Q Consensus 446 i~n~ 449 (539)
..+.
T Consensus 96 P~r~ 99 (177)
T PRK13264 96 PQRE 99 (177)
T ss_pred CccC
Confidence 8774
No 59
>TIGR02272 gentisate_1_2 gentisate 1,2-dioxygenase. This family consists of gentisate 1,2-dioxygenases. This ring-opening enzyme acts in salicylate degradation that goes via gentisate rather than via catechol. It converts gentisate to maleylpyruvate. Some putative gentisate 1,2-dioxygenases are excluded by a relatively high trusted cutoff score because they are too closely related to known examples of 1-hydroxy-2-naphthoate dioxygenase. Therefore some homologs may be bona fide gentisate 1,2-dioxygenases even if they score below the given cutoffs.
Probab=97.41 E-value=0.00057 Score=72.12 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=66.1
Q ss_pred ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441 357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF 436 (539)
Q Consensus 357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~ 436 (539)
.|.+.+-.|.||-...||=| ++..|.||++|+|..++|+. ++ ..+++||+|
T Consensus 80 tl~a~~q~l~pGe~~~~HRh-t~sAl~~vveG~G~~t~V~g--------------------------~~--~~~~~gD~~ 130 (335)
T TIGR02272 80 SLYAGLQLILPGEVAPSHRH-TQSALRFIVEGKGAFTAVDG--------------------------ER--TTMHPGDFI 130 (335)
T ss_pred hHHhhhEEeCCCCCCCcccc-ccceEEEEEEcCceEEEECC--------------------------EE--EeeeCCCEE
Confidence 57788889999999999999 88899999999997777765 23 479999999
Q ss_pred EeCCCCeEEEEcCCCCcEEEEEEee
Q 039441 437 IIPPGHPIALVASPNEKLLTVGFSL 461 (539)
Q Consensus 437 vVPaG~~h~i~n~gne~l~~v~F~~ 461 (539)
++|.++.|...|.+++++.|+.+.+
T Consensus 131 ~tP~w~wH~H~n~~d~~~~wld~lD 155 (335)
T TIGR02272 131 ITPSWTWHDHGNPGDEPMIWLDGLD 155 (335)
T ss_pred EeCCCeeEecccCCCCcEEEEecCC
Confidence 9999999999999898888876543
No 60
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=97.41 E-value=0.00095 Score=63.65 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=59.3
Q ss_pred eecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcC
Q 039441 370 MMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVAS 449 (539)
Q Consensus 370 m~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~ 449 (539)
+..=|.| .+.||-|++.|.|.+.|..++| +.+.-.+.+||++.||+|.-||.--+
T Consensus 87 F~~EH~H-~d~EvRy~vaG~GiF~v~~~d~------------------------~~~~i~c~~gDLI~vP~gi~HwFtlt 141 (181)
T COG1791 87 FLQEHLH-TDDEVRYFVAGEGIFDVHSPDG------------------------KVYQIRCEKGDLISVPPGIYHWFTLT 141 (181)
T ss_pred HHHHhcc-CCceEEEEEecceEEEEECCCC------------------------cEEEEEEccCCEEecCCCceEEEEcc
Confidence 3456888 8899999999999999999987 36667889999999999999999888
Q ss_pred CCCcEEEEEEeecC
Q 039441 450 PNEKLLTVGFSLNA 463 (539)
Q Consensus 450 gne~l~~v~F~~na 463 (539)
.+..++.|=+++++
T Consensus 142 ~~~~f~AvRlF~~~ 155 (181)
T COG1791 142 ESPNFKAVRLFTEP 155 (181)
T ss_pred CCCcEEEEEEeeCC
Confidence 77778888777665
No 61
>TIGR03037 anthran_nbaC 3-hydroxyanthranilate 3,4-dioxygenase. Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase. This enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.
Probab=97.40 E-value=0.0008 Score=63.88 Aligned_cols=59 Identities=12% Similarity=0.207 Sum_probs=45.2
Q ss_pred CCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEE
Q 039441 367 QGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIAL 446 (539)
Q Consensus 367 pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i 446 (539)
||+-.--|.|+ +.++.||++|...|.+...+. .-+..|++||+|+||+|.+|..
T Consensus 37 pn~R~d~H~~~-tdE~FyqleG~~~l~v~d~g~-------------------------~~~v~L~eGd~flvP~gvpHsP 90 (159)
T TIGR03037 37 PNARTDFHDDP-GEEFFYQLKGEMYLKVTEEGK-------------------------REDVPIREGDIFLLPPHVPHSP 90 (159)
T ss_pred CCCCcccccCC-CceEEEEEcceEEEEEEcCCc-------------------------EEEEEECCCCEEEeCCCCCccc
Confidence 33333334443 899999999999999888642 2346899999999999999999
Q ss_pred EcCCC
Q 039441 447 VASPN 451 (539)
Q Consensus 447 ~n~gn 451 (539)
.+..+
T Consensus 91 ~r~~~ 95 (159)
T TIGR03037 91 QRPAG 95 (159)
T ss_pred ccCCC
Confidence 88643
No 62
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=97.33 E-value=0.00085 Score=68.13 Aligned_cols=193 Identities=13% Similarity=0.095 Sum_probs=83.7
Q ss_pred CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCc--eeeecCCCcEEEeCCCCeEEEEecCCCceEEE
Q 039441 197 GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERR--ESFNMEHGDVISVPAGTTYYLSNQDNVDRLHV 274 (539)
Q Consensus 197 gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~--~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~i 274 (539)
|-..+||.+ .++--.-||+|+++.-+||++|.... +.+ ...-|.+|.-|++|||..|+....++ ..|.+
T Consensus 35 g~~~~~vkf---~~g~~~pph~H~~~~~~~Vi~G~~~~-----~~~~a~~~~l~~Gsy~~~PaG~~h~~~~~~~-~~~~~ 105 (251)
T PF14499_consen 35 GPSGMRVKF---PAGFSSPPHIHNADYRGTVISGELHN-----GDPKAAAMWLPAGSYWFQPAGEPHITAAEGE-TNLLF 105 (251)
T ss_dssp S-EEEEEEE----TT-EE--BEESS-EEEEEEESEEEE-----TTEE-----E-TTEEEEE-TT-EEEETTS-E-E-EEE
T ss_pred CcceEEEEc---CCCccCCCcceeeeEEEEEEEeEEEc-----CCCcccceecCCCceEeccCCCceeeeccCc-cEEEE
Confidence 556667766 66666678999999999999996444 333 23569999999999999999888763 33322
Q ss_pred EEEeccCCCCCCcee---------cc----ccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCce
Q 039441 275 AKLLQPVNTPGQFRV---------QQ----RQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGR 341 (539)
Q Consensus 275 v~l~d~~n~pg~f~~---------~~----q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~ 341 (539)
+-+ .+ |.|.. +. ..+..|+=+...++. |- +.. .....+=.
T Consensus 106 ~e~---g~--gp~~v~p~~~~~~~~e~p~n~~~~~ivwld~~dl~---------W~------------~~~-~~~~~g~~ 158 (251)
T PF14499_consen 106 IEI---GE--GPYDVKPSEEAFDNGERPINVDKDNIVWLDASDLE---------WI------------SAP-PGPPPGAQ 158 (251)
T ss_dssp EE----S-----EE---------SS--TT--GGG-EEEEECCCS-----------E------------E-S-SSTT-SEE
T ss_pred EEe---CC--CccccccccccccccccccccccccceEeccccCC---------cc------------ccC-CCCCCcce
Confidence 211 11 11211 00 011222211111000 00 000 00000111
Q ss_pred EEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhc
Q 039441 342 FFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSR 421 (539)
Q Consensus 342 i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~ 421 (539)
+..+... | ++-.+...++.|..|.=-.+|+| ...+=+||++|....++-.-.
T Consensus 159 ~a~Lwgd--~--~~g~~~gll~kLPagf~g~i~~h-~~~eraVvI~G~~~~~~~~~~----------------------- 210 (251)
T PF14499_consen 159 IAFLWGD--P--NTGQYTGLLLKLPAGFTGRIHTH-ASNERAVVISGELDYQSYGAS----------------------- 210 (251)
T ss_dssp EEEEEE---T--TS-EE-EEEEE-SSEE--SEEE---S-EEEEEEEEEEEETTEEEE-----------------------
T ss_pred EEEEecC--C--CCCceeeEEEEcCCCCcCceecc-CCceEEEEEEeEEEEeecccC-----------------------
Confidence 2222211 0 01124455667766666788998 667889999999877443321
Q ss_pred ceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEE
Q 039441 422 ELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVG 458 (539)
Q Consensus 422 ~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~ 458 (539)
-...|.+|.-|.-|....|-+.++ +++..++.
T Consensus 211 ----~~~~L~~GSYf~s~~~~~H~~~~~-e~~~vlyI 242 (251)
T PF14499_consen 211 ----NFGTLDPGSYFGSPGHITHGIFIT-EDECVLYI 242 (251)
T ss_dssp ----TTEEEEE-TT-EE--E------EE-SS-EEEEE
T ss_pred ----CCccccCCcccccCCccccccccc-CCCEEEEE
Confidence 125689999999999999998744 55555543
No 63
>PRK15457 ethanolamine utilization protein EutQ; Provisional
Probab=97.32 E-value=0.0015 Score=65.23 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=54.1
Q ss_pred ccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441 355 EIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV 434 (539)
Q Consensus 355 ~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD 434 (539)
+..|++.++.+....+ .|+.+-.||.||++|+..+.+ ++ + ++.+++||
T Consensus 154 ~s~m~aGf~~~~~~sf---~wtl~~dEi~YVLEGe~~l~I---dG------------------------~--t~~l~pGD 201 (233)
T PRK15457 154 GSSMAAGFMQWENAFF---PWTLNYDEIDMVLEGELHVRH---EG------------------------E--TMIAKAGD 201 (233)
T ss_pred CCceeeEEEEEecCcc---ceeccceEEEEEEEeEEEEEE---CC------------------------E--EEEeCCCc
Confidence 4468999999998665 499999999999999999988 23 2 25799999
Q ss_pred EEEeCCCCeEEEEcCCCCcEEEEE
Q 039441 435 VFIIPPGHPIALVASPNEKLLTVG 458 (539)
Q Consensus 435 V~vVPaG~~h~i~n~gne~l~~v~ 458 (539)
+++||.|..|.....+ ...+++
T Consensus 202 vlfIPkGs~~hf~tp~--~aRfly 223 (233)
T PRK15457 202 VMFIPKGSSIEFGTPS--SVRFLY 223 (233)
T ss_pred EEEECCCCeEEecCCC--CeeEEE
Confidence 9999999995444432 455544
No 64
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=97.19 E-value=0.0042 Score=56.59 Aligned_cols=78 Identities=18% Similarity=0.184 Sum_probs=69.0
Q ss_pred ccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441 355 EIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV 434 (539)
Q Consensus 355 ~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD 434 (539)
++|+|+-...|.+|.-...||- |--|-+|+++|+|.++.+..+ + .+.+++|.
T Consensus 32 gmGFS~h~T~i~aGtet~~~Yk-nHlEAvyci~G~Gev~~~~~G-------------------------~--~~~i~pGt 83 (126)
T PF06339_consen 32 GMGFSFHETTIYAGTETHIHYK-NHLEAVYCIEGEGEVEDLDTG-------------------------E--VHPIKPGT 83 (126)
T ss_pred CCCEEEEEEEEeCCCeeEEEec-CceEEEEEEeceEEEEEccCC-------------------------c--EEEcCCCe
Confidence 6789999999999999999995 999999999999999998753 1 26899999
Q ss_pred EEEeCCCCeEEEEcCCCCcEEEEEEeec
Q 039441 435 VFIIPPGHPIALVASPNEKLLTVGFSLN 462 (539)
Q Consensus 435 V~vVPaG~~h~i~n~gne~l~~v~F~~n 462 (539)
+++.-+.=.|++.+.. +|.++|++.-
T Consensus 84 ~YaLd~hD~H~lra~~--dm~~vCVFnP 109 (126)
T PF06339_consen 84 MYALDKHDRHYLRAKT--DMRLVCVFNP 109 (126)
T ss_pred EEecCCCccEEEEecC--CEEEEEEcCC
Confidence 9999999999999975 7999997633
No 65
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=97.15 E-value=0.0019 Score=55.25 Aligned_cols=60 Identities=17% Similarity=0.285 Sum_probs=48.7
Q ss_pred ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEec
Q 039441 199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQ 266 (539)
Q Consensus 199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~ 266 (539)
...++.|+++.|++.+-.|.|...+.+||++|.... .+ ..+.+||.++.|+|+.|-+...
T Consensus 22 ~g~~~~L~r~~pG~~~p~H~H~g~ee~~VLeG~~~d----~~----~~~~~G~~~~~p~g~~h~~~s~ 81 (91)
T PF12973_consen 22 TGERVSLLRLEPGASLPRHRHPGGEEILVLEGELSD----GD----GRYGAGDWLRLPPGSSHTPRSD 81 (91)
T ss_dssp TTEEEEEEEE-TTEEEEEEEESS-EEEEEEECEEEE----TT----CEEETTEEEEE-TTEEEEEEES
T ss_pred ccCEEEEEEECCCCCcCccCCCCcEEEEEEEEEEEE----CC----ccCCCCeEEEeCCCCccccCcC
Confidence 356889999999999999999999999999998763 22 3569999999999999999964
No 66
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=97.13 E-value=0.015 Score=62.86 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=41.5
Q ss_pred eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441 358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI 437 (539)
Q Consensus 358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v 437 (539)
..+..+.+..+... +......|++|++|++.+.. ++ .. ..|++|++++
T Consensus 321 F~~~~~~l~~~~~~---~~~~~~~Illv~~G~~~i~~---~~------------------------~~--~~l~~G~~~f 368 (389)
T PRK15131 321 FAFSLHDLSDQPTT---LSQQSAAILFCVEGEAVLWK---GE------------------------QQ--LTLKPGESAF 368 (389)
T ss_pred cEEEEEEECCceEE---ecCCCcEEEEEEcceEEEEe---CC------------------------eE--EEECCCCEEE
Confidence 55566666554333 23467899999999998742 22 12 4699999999
Q ss_pred eCCCCeEEEEc
Q 039441 438 IPPGHPIALVA 448 (539)
Q Consensus 438 VPaG~~h~i~n 448 (539)
||++...+.+.
T Consensus 369 ipa~~~~~~~~ 379 (389)
T PRK15131 369 IAANESPVTVS 379 (389)
T ss_pred EeCCCccEEEe
Confidence 99998877664
No 67
>PF05899 Cupin_3: Protein of unknown function (DUF861); InterPro: IPR008579 The function of the proteins in this entry are unknown. They contain the conserved barrel domain of the 'cupin' superfamily and members are specific to plants and bacteria.; PDB: 1RC6_A 3MYX_A 1O5U_A 2K9Z_A 1LKN_A 3ES4_A 1SFN_B 3BCW_A.
Probab=97.13 E-value=0.002 Score=53.32 Aligned_cols=60 Identities=17% Similarity=0.195 Sum_probs=44.9
Q ss_pred eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441 358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI 437 (539)
Q Consensus 358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v 437 (539)
+++..-..+||.+. -+| ..+|++||++|++.++.- +| .. .+|++||+++
T Consensus 7 ~~~g~w~~~pg~~~-~~~--~~~E~~~vleG~v~it~~--~G------------------------~~--~~~~aGD~~~ 55 (74)
T PF05899_consen 7 FSAGVWECTPGKFP-WPY--PEDEFFYVLEGEVTITDE--DG------------------------ET--VTFKAGDAFF 55 (74)
T ss_dssp EEEEEEEEECEEEE-EEE--SSEEEEEEEEEEEEEEET--TT------------------------EE--EEEETTEEEE
T ss_pred EEEEEEEECCceeE-eeC--CCCEEEEEEEeEEEEEEC--CC------------------------CE--EEEcCCcEEE
Confidence 56777788898764 334 459999999999988754 43 12 5799999999
Q ss_pred eCCCCeEEEEc
Q 039441 438 IPPGHPIALVA 448 (539)
Q Consensus 438 VPaG~~h~i~n 448 (539)
+|+|+...+..
T Consensus 56 ~p~G~~~~w~v 66 (74)
T PF05899_consen 56 LPKGWTGTWEV 66 (74)
T ss_dssp E-TTEEEEEEE
T ss_pred ECCCCEEEEEE
Confidence 99999776544
No 68
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=97.07 E-value=0.0014 Score=67.91 Aligned_cols=65 Identities=18% Similarity=0.210 Sum_probs=57.2
Q ss_pred ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441 199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD 267 (539)
Q Consensus 199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g 267 (539)
+.+++++-...|.....+|||+.=+|.||++|.+.+.+ +..++.|.+||++.|++|++|.+...+
T Consensus 24 ~~~~~~~~~~~~~~m~~~HwH~e~Ei~yv~~G~~~~~i----~g~~~~l~~Gd~ili~s~~~H~~~~~~ 88 (302)
T PRK10371 24 EYQRLEIEFRPPHIMPTSHWHGQVEVNVPFDGDVEYLI----NNEKVQINQGHITLFWACTPHQLTDPG 88 (302)
T ss_pred CCceeEEEeeCCCCCCCCCccccEEEEEecCCcEEEEE----CCEEEEEcCCcEEEEecCCcccccccC
Confidence 67889998889999999999999999999999987655 346888999999999999999887655
No 69
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=97.04 E-value=0.0087 Score=55.00 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=55.7
Q ss_pred ccCCCceEEEeCCcccccccccceeEEEEE-EcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHH
Q 039441 335 YNNNFGRFFEATPKDYQQLQEIDAGVTYVE-INQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEE 413 (539)
Q Consensus 335 ~sn~~G~i~~~~~~~fP~L~~l~isva~v~-L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~ 413 (539)
+...-|.+..+...+...+.- -.+..+. ..+|..+..|+|...+++++|++|+..+.+-+...
T Consensus 11 ~~D~RG~L~~~e~~~~ipf~i--~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~-------------- 74 (131)
T PF05523_consen 11 ISDERGSLSVIERFDDIPFEI--KRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGRE-------------- 74 (131)
T ss_dssp EEETTEEEEEEETTTSSSS-----EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS---------------
T ss_pred eeCCCCcEEEEeccCCCCCCc--cEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCC--------------
Confidence 344478877777653222221 3455554 44555599999999999999999999998766542
Q ss_pred HHHHhhhcceeeEEeeeCCC-cEEEeCCCCeEEEEcCCCCcEEEEEEee
Q 039441 414 EEEEESSRELQKISANLSPG-VVFIIPPGHPIALVASPNEKLLTVGFSL 461 (539)
Q Consensus 414 ~~~e~~~~~y~~~~~~L~~G-DV~vVPaG~~h~i~n~gne~l~~v~F~~ 461 (539)
.-.+.|..- .++.||+|+.|.+.|.+.+ ..++++..
T Consensus 75 -----------~~~~~L~~~~~~L~Ippg~w~~~~~~s~~-svlLv~as 111 (131)
T PF05523_consen 75 -----------EEEFILDEPNKGLYIPPGVWHGIKNFSED-SVLLVLAS 111 (131)
T ss_dssp -----------EEEEEE--TTEEEEE-TT-EEEEE---TT--EEEEEES
T ss_pred -----------cEEEEECCCCeEEEECCchhhHhhccCCC-cEEEEEcC
Confidence 233456444 6999999999999998655 66666543
No 70
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=97.02 E-value=0.0026 Score=64.32 Aligned_cols=63 Identities=17% Similarity=0.272 Sum_probs=48.7
Q ss_pred eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441 200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD 267 (539)
Q Consensus 200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g 267 (539)
.+.+.+.. .......||||+.-++.||++|.+.+.+ ....+.|.+||++.||+|..|.+....
T Consensus 23 ~~~~~~~~-~~~~~~~~H~H~~~ei~~v~~G~~~~~i----~~~~~~l~~g~l~~i~p~~~H~~~~~~ 85 (278)
T PRK10296 23 NFHVFIYN-KTESVSGLHQHDYYEFTLVLTGRYYQEI----NGKRVLLERGDFVFIPLGSHHQSFYEF 85 (278)
T ss_pred eEEEEEEe-hhhcCCCCcccccEEEEEEEeceEEEEE----CCEEEEECCCcEEEeCCCCccceeeeC
Confidence 44444422 1233457999999999999999998777 335789999999999999999876554
No 71
>PF12973 Cupin_7: ChrR Cupin-like domain; PDB: 3O14_B 2Z2S_F 2Q1Z_B 3EBR_A.
Probab=97.00 E-value=0.0028 Score=54.16 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=47.0
Q ss_pred ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441 357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF 436 (539)
Q Consensus 357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~ 436 (539)
+..+.++.+.||+.+..|.| ...+.+|||+|.... .+ ..+.+||.+
T Consensus 23 g~~~~L~r~~pG~~~p~H~H-~g~ee~~VLeG~~~d----~~-----------------------------~~~~~G~~~ 68 (91)
T PF12973_consen 23 GERVSLLRLEPGASLPRHRH-PGGEEILVLEGELSD----GD-----------------------------GRYGAGDWL 68 (91)
T ss_dssp TEEEEEEEE-TTEEEEEEEE-SS-EEEEEEECEEEE----TT-----------------------------CEEETTEEE
T ss_pred cCEEEEEEECCCCCcCccCC-CCcEEEEEEEEEEEE----CC-----------------------------ccCCCCeEE
Confidence 56899999999999999999 667888999999853 21 246999999
Q ss_pred EeCCCCeEEEEc
Q 039441 437 IIPPGHPIALVA 448 (539)
Q Consensus 437 vVPaG~~h~i~n 448 (539)
+.|+|..|...+
T Consensus 69 ~~p~g~~h~~~s 80 (91)
T PF12973_consen 69 RLPPGSSHTPRS 80 (91)
T ss_dssp EE-TTEEEEEEE
T ss_pred EeCCCCccccCc
Confidence 999999999986
No 72
>PRK10371 DNA-binding transcriptional regulator MelR; Provisional
Probab=96.99 E-value=0.0016 Score=67.35 Aligned_cols=64 Identities=13% Similarity=0.171 Sum_probs=51.0
Q ss_pred eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441 358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI 437 (539)
Q Consensus 358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v 437 (539)
-+.+.....|..|..+||| +.-+|.||++|.+.+.+-. +. ..|.+||+++
T Consensus 26 ~~~~~~~~~~~~m~~~HwH-~e~Ei~yv~~G~~~~~i~g---------------------------~~--~~l~~Gd~il 75 (302)
T PRK10371 26 QRLEIEFRPPHIMPTSHWH-GQVEVNVPFDGDVEYLINN---------------------------EK--VQINQGHITL 75 (302)
T ss_pred ceeEEEeeCCCCCCCCCcc-ccEEEEEecCCcEEEEECC---------------------------EE--EEEcCCcEEE
Confidence 4455666778899999999 8899999999998765421 12 5699999999
Q ss_pred eCCCCeEEEEcCCC
Q 039441 438 IPPGHPIALVASPN 451 (539)
Q Consensus 438 VPaG~~h~i~n~gn 451 (539)
||+|.+|.+...++
T Consensus 76 i~s~~~H~~~~~~~ 89 (302)
T PRK10371 76 FWACTPHQLTDPGN 89 (302)
T ss_pred EecCCcccccccCC
Confidence 99999998776544
No 73
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=96.94 E-value=0.0032 Score=62.61 Aligned_cols=73 Identities=15% Similarity=0.070 Sum_probs=61.3
Q ss_pred ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441 357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF 436 (539)
Q Consensus 357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~ 436 (539)
+..+.++.|.||+-+..|.| ...|+.+|++|.- .+.. ..+.+||++
T Consensus 126 ~~~v~Ll~i~pG~~~p~H~H-~G~E~tlVLeG~f----~de~-----------------------------g~y~~Gd~i 171 (215)
T TIGR02451 126 NARVRLLYIEAGQSIPQHTH-KGFELTLVLHGAF----SDET-----------------------------GVYGVGDFE 171 (215)
T ss_pred CcEEEEEEECCCCccCCCcC-CCcEEEEEEEEEE----EcCC-----------------------------CccCCCeEE
Confidence 36789999999999999999 7788999999994 2222 357999999
Q ss_pred EeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441 437 IIPPGHPIALVASPNEKLLTVGFSLNA 463 (539)
Q Consensus 437 vVPaG~~h~i~n~gne~l~~v~F~~na 463 (539)
.+|.|..|...+.+++++..+++.+.+
T Consensus 172 ~~p~~~~H~p~a~~~~~Cicl~v~dap 198 (215)
T TIGR02451 172 EADGSVQHQPRTVSGGDCLCLAVLDAP 198 (215)
T ss_pred ECCCCCCcCcccCCCCCeEEEEEecCC
Confidence 999999999999988888888766544
No 74
>PRK13500 transcriptional activator RhaR; Provisional
Probab=96.94 E-value=0.0021 Score=66.70 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=44.8
Q ss_pred cCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEE
Q 039441 366 NQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIA 445 (539)
Q Consensus 366 ~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~ 445 (539)
.|.....|||| +..+|+||++|.|.+.+=.. ...|.+|||++||+|.+|.
T Consensus 56 ~~~~~~~~H~H-~~~el~~v~~G~g~~~v~~~-----------------------------~~~l~~Gdl~~I~~~~~H~ 105 (312)
T PRK13500 56 YPQDVFAEHTH-DFCELVIVWRGNGLHVLNDR-----------------------------PYRITRGDLFYIHADDKHS 105 (312)
T ss_pred CCCCCCCcccc-ceEEEEEEEcCeEEEEECCE-----------------------------EEeecCCeEEEECCCCeec
Confidence 34455689999 79999999999998644322 2579999999999999999
Q ss_pred EEcCCC
Q 039441 446 LVASPN 451 (539)
Q Consensus 446 i~n~gn 451 (539)
.....+
T Consensus 106 ~~~~~~ 111 (312)
T PRK13500 106 YASVND 111 (312)
T ss_pred ccccCC
Confidence 876544
No 75
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=96.90 E-value=0.0046 Score=57.99 Aligned_cols=62 Identities=16% Similarity=0.283 Sum_probs=45.0
Q ss_pred eeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441 207 EANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN 268 (539)
Q Consensus 207 ~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~ 268 (539)
.--||.=--=|+-..++|+|.++|...+.+++.|......|++||++.+|++++|+=+=..+
T Consensus 39 VGGPN~R~DyHine~eE~FyQ~kG~m~Lkv~e~g~~kdi~I~EGe~fLLP~~vpHsP~R~~~ 100 (151)
T PF06052_consen 39 VGGPNQRTDYHINETEEFFYQLKGDMCLKVVEDGKFKDIPIREGEMFLLPANVPHSPQRPAD 100 (151)
T ss_dssp EESSB--SSEEE-SS-EEEEEEES-EEEEEEETTEEEEEEE-TTEEEEE-TT--EEEEE-TT
T ss_pred EcCCCCCCccccCCcceEEEEEeCcEEEEEEeCCceEEEEeCCCcEEecCCCCCCCCcCCCC
Confidence 34555555556778999999999999999999998899999999999999999999887654
No 76
>PRK13501 transcriptional activator RhaR; Provisional
Probab=96.89 E-value=0.0022 Score=65.43 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=43.4
Q ss_pred ceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEc
Q 039441 369 GMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVA 448 (539)
Q Consensus 369 gm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n 448 (539)
.-+.|||| +-.+|+||++|+|.+.| ++ ....|.+||+++||+|.+|.+..
T Consensus 29 ~~~~~H~H-~~~ei~~i~~G~~~~~i---~~--------------------------~~~~l~~g~~~~I~p~~~H~~~~ 78 (290)
T PRK13501 29 ETFVEHTH-QFCEIVIVWRGNGLHVL---ND--------------------------HPYRITCGDVFYIQAADHHSYES 78 (290)
T ss_pred CCCccccc-cceeEEEEecCceEEEE---CC--------------------------eeeeecCCeEEEEcCCCcccccc
Confidence 33579999 89999999999999886 21 12579999999999999999876
Q ss_pred CCC
Q 039441 449 SPN 451 (539)
Q Consensus 449 ~gn 451 (539)
.++
T Consensus 79 ~~~ 81 (290)
T PRK13501 79 VHD 81 (290)
T ss_pred cCC
Confidence 544
No 77
>PF05523 FdtA: WxcM-like, C-terminal ; InterPro: IPR008894 This entry includes FdtA (Q6T1W8 from SWISSPROT) from Aneurinibacillus thermoaerophilus, which has been characterised as a dTDP-6-deoxy-3,4-keto-hexulose isomerase []. It also includes WxcM (Q93S92 from SWISSPROT) from Xanthomonas campestris pv campestris) []. ; PDB: 2PAK_A 2PAE_A 2PA7_B 2PAM_A.
Probab=96.88 E-value=0.012 Score=54.08 Aligned_cols=100 Identities=17% Similarity=0.275 Sum_probs=59.8
Q ss_pred eEecCCceEEEeeccCcccccccCcceeeEEEeeeCC-Ceeeccc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCc
Q 039441 174 RVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANP-STLVVPH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGD 251 (539)
Q Consensus 174 ~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P-~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GD 251 (539)
.+..+-|.+.+++.++. ..| ...|+-++.--| +..+=.| |....++++|++|+..|.+-+.....++.|..-+
T Consensus 10 ~~~D~RG~L~~~e~~~~--ipf---~i~rvy~i~~~~~~~~RG~H~Hk~~~~~~~~l~Gs~~v~~~d~~~~~~~~L~~~~ 84 (131)
T PF05523_consen 10 KISDERGSLSVIERFDD--IPF---EIKRVYYIYNVPPGVIRGWHAHKKTTQWFIVLSGSFKVVLDDGREEEEFILDEPN 84 (131)
T ss_dssp EEEETTEEEEEEETTTS--SSS------EEEEEES--SS--EEEEEESS--EEEEEEES-EEEEEE-SS-EEEEEE--TT
T ss_pred ceeCCCCcEEEEeccCC--CCC---CccEEEEEEcCCCCCcccccccccccEEEEEEeCEEEEEEecCCCcEEEEECCCC
Confidence 45677899998777633 112 233555554344 4447777 6799999999999999998877777888886664
Q ss_pred -EEEeCCCCeEEEEecCCCceEEEEEEecc
Q 039441 252 -VISVPAGTTYYLSNQDNVDRLHVAKLLQP 280 (539)
Q Consensus 252 -V~~iPaG~~h~i~N~g~~e~L~iv~l~d~ 280 (539)
++.||+|+.|-+.|.+++ ++++.+.+.
T Consensus 85 ~~L~Ippg~w~~~~~~s~~--svlLv~as~ 112 (131)
T PF05523_consen 85 KGLYIPPGVWHGIKNFSED--SVLLVLASE 112 (131)
T ss_dssp EEEEE-TT-EEEEE---TT---EEEEEESS
T ss_pred eEEEECCchhhHhhccCCC--cEEEEEcCC
Confidence 999999999999999854 656665553
No 78
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=96.85 E-value=0.0037 Score=59.03 Aligned_cols=74 Identities=23% Similarity=0.341 Sum_probs=53.3
Q ss_pred eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441 200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ 279 (539)
Q Consensus 200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d 279 (539)
.+...+|+|+... +|...+-+++-||+.|+-.|. .. -.++..++|||++||+|+..-+--.+ ..+++.+..
T Consensus 76 ~l~~Gf~~le~~~--f~wtl~YDEi~~VlEG~L~i~--~~--G~~~~A~~GDvi~iPkGs~I~fst~~---~a~~~Yv~y 146 (152)
T PF06249_consen 76 RLSAGFMELEKTS--FPWTLTYDEIKYVLEGTLEIS--ID--GQTVTAKPGDVIFIPKGSTITFSTPD---YARFFYVTY 146 (152)
T ss_dssp SSEEEEEEEEEEE--EEEE-SSEEEEEEEEEEEEEE--ET--TEEEEEETT-EEEE-TT-EEEEEEEE---EEEEEEEEE
T ss_pred ceeeEEEEEeCCC--ccEEeecceEEEEEEeEEEEE--EC--CEEEEEcCCcEEEECCCCEEEEecCC---CEEEEEEEC
Confidence 5667788888743 577789999999999975554 44 47889999999999999988775543 466777776
Q ss_pred cCC
Q 039441 280 PVN 282 (539)
Q Consensus 280 ~~n 282 (539)
|.|
T Consensus 147 Pa~ 149 (152)
T PF06249_consen 147 PAN 149 (152)
T ss_dssp STT
T ss_pred CCc
Confidence 654
No 79
>PRK10296 DNA-binding transcriptional regulator ChbR; Provisional
Probab=96.84 E-value=0.0055 Score=61.93 Aligned_cols=52 Identities=21% Similarity=0.196 Sum_probs=42.2
Q ss_pred CceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEE
Q 039441 368 GGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALV 447 (539)
Q Consensus 368 Ggm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~ 447 (539)
+....|||| +..+|+||++|.+.+.| ++ +. ..|.+||+++||+|..|...
T Consensus 33 ~~~~~~H~H-~~~ei~~v~~G~~~~~i---~~------------------------~~--~~l~~g~l~~i~p~~~H~~~ 82 (278)
T PRK10296 33 ESVSGLHQH-DYYEFTLVLTGRYYQEI---NG------------------------KR--VLLERGDFVFIPLGSHHQSF 82 (278)
T ss_pred hcCCCCccc-ccEEEEEEEeceEEEEE---CC------------------------EE--EEECCCcEEEeCCCCcccee
Confidence 445689999 89999999999998766 22 12 57999999999999999765
Q ss_pred cC
Q 039441 448 AS 449 (539)
Q Consensus 448 n~ 449 (539)
..
T Consensus 83 ~~ 84 (278)
T PRK10296 83 YE 84 (278)
T ss_pred ee
Confidence 43
No 80
>TIGR02451 anti_sig_ChrR anti-sigma factor, putative, ChrR family. The member of this family from Rhodobacter sphaeroides has been shown both to form a complex with sigma(E) and to negatively regulate tetrapyrrole biosynthesis. This protein likely contains (at least) two distinct functional domains; several smaller homologs (excluded by the model) show homology only to the C-terminal, including a motif PxHxHxGxE.
Probab=96.83 E-value=0.003 Score=62.75 Aligned_cols=72 Identities=14% Similarity=0.093 Sum_probs=60.7
Q ss_pred eeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEec
Q 039441 200 NYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQ 279 (539)
Q Consensus 200 ~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d 279 (539)
..++.++++.|++-+..|-|...++.+|++|.- .+ +...+.+||++.+|+|+.|...+.+ ++++.++.++|
T Consensus 126 ~~~v~Ll~i~pG~~~p~H~H~G~E~tlVLeG~f----~d----e~g~y~~Gd~i~~p~~~~H~p~a~~-~~~Cicl~v~d 196 (215)
T TIGR02451 126 NARVRLLYIEAGQSIPQHTHKGFELTLVLHGAF----SD----ETGVYGVGDFEEADGSVQHQPRTVS-GGDCLCLAVLD 196 (215)
T ss_pred CcEEEEEEECCCCccCCCcCCCcEEEEEEEEEE----Ec----CCCccCCCeEEECCCCCCcCcccCC-CCCeEEEEEec
Confidence 457889999999999999788889999999993 22 2346899999999999999999997 57788888887
Q ss_pred c
Q 039441 280 P 280 (539)
Q Consensus 280 ~ 280 (539)
.
T Consensus 197 a 197 (215)
T TIGR02451 197 A 197 (215)
T ss_pred C
Confidence 3
No 81
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=96.79 E-value=0.0066 Score=65.87 Aligned_cols=56 Identities=14% Similarity=0.278 Sum_probs=37.2
Q ss_pred ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441 218 HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL 278 (539)
Q Consensus 218 ~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~ 278 (539)
.+|.++++||.+|++.|.... =...|++||+++||.|+.+.+.=.+ ..++.|+=.+
T Consensus 143 NaDGD~Li~~q~G~l~l~Te~----G~L~v~pGd~~VIPRG~~~rv~l~~-p~rgyi~E~~ 198 (424)
T PF04209_consen 143 NADGDELIFPQQGSLRLETEF----GRLDVRPGDYVVIPRGTRFRVELPG-PARGYIIENF 198 (424)
T ss_dssp ESSEEEEEEEEES-EEEEETT----EEEEE-TTEEEEE-TT--EEEE-SS-SEEEEEEEEE
T ss_pred cCCCCEEEEEEECCEEEEecC----eeEEEcCCeEEEECCeeEEEEEeCC-CceEEEEEcC
Confidence 689999999999999886522 1356999999999999999987664 4444444433
No 82
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=96.77 E-value=0.028 Score=58.47 Aligned_cols=60 Identities=22% Similarity=0.215 Sum_probs=42.0
Q ss_pred ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441 357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF 436 (539)
Q Consensus 357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~ 436 (539)
..++.++.+... +. ..+.++..|++|++|++.+.. .+ .+..|++|+++
T Consensus 234 ~F~~~~~~~~~~-~~--~~~~~~~~il~v~~G~~~i~~--~~---------------------------~~~~l~~G~~~ 281 (302)
T TIGR00218 234 YFSVYKWDISGK-AE--FIQQQSALILSVLEGSGRIKS--GG---------------------------KTLPLKKGESF 281 (302)
T ss_pred CeEEEEEEeCCc-ee--eccCCCcEEEEEEcceEEEEE--CC---------------------------EEEEEecccEE
Confidence 366677777643 21 123467899999999998742 22 12569999999
Q ss_pred EeCCCCeEEEEc
Q 039441 437 IIPPGHPIALVA 448 (539)
Q Consensus 437 vVPaG~~h~i~n 448 (539)
+||++...+.+.
T Consensus 282 ~ipa~~~~~~i~ 293 (302)
T TIGR00218 282 FIPAHLGPFTIE 293 (302)
T ss_pred EEccCCccEEEE
Confidence 999999766654
No 83
>PRK13502 transcriptional activator RhaR; Provisional
Probab=96.75 E-value=0.0037 Score=63.26 Aligned_cols=63 Identities=16% Similarity=0.245 Sum_probs=48.1
Q ss_pred eEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEe
Q 039441 359 GVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFII 438 (539)
Q Consensus 359 sva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vV 438 (539)
.+..-...|.-...+||| +..+|+||++|.+.+.+-.. . ..|++||+++|
T Consensus 19 ~~~~~~~~~~~~~~~H~h-~~~~l~~v~~G~~~~~i~~~---------------------------~--~~l~~g~l~li 68 (282)
T PRK13502 19 AVTVADRYPQDVFAEHTH-EFCELVMVWRGNGLHVLNER---------------------------P--YRITRGDLFYI 68 (282)
T ss_pred ceEEecCCCCCCCCcccc-ceEEEEEEecCcEEEEECCE---------------------------E--EeecCCcEEEE
Confidence 333334455555789999 78999999999999876221 2 57999999999
Q ss_pred CCCCeEEEEcCCC
Q 039441 439 PPGHPIALVASPN 451 (539)
Q Consensus 439 PaG~~h~i~n~gn 451 (539)
|+|.+|.+...++
T Consensus 69 ~~~~~H~~~~~~~ 81 (282)
T PRK13502 69 RAEDKHSYTSVND 81 (282)
T ss_pred CCCCcccccccCC
Confidence 9999999876544
No 84
>PF06339 Ectoine_synth: Ectoine synthase; InterPro: IPR010462 This family consists of several bacterial ectoine synthase proteins. The ectABC genes encode the diaminobutyric acid acetyltransferase (EctA), the diaminobutyric acid aminotransferase (EctB), and the ectoine synthase (EctC). Together these proteins constitute the ectoine biosynthetic pathway [].; GO: 0016836 hydro-lyase activity, 0006596 polyamine biosynthetic process
Probab=96.59 E-value=0.017 Score=52.72 Aligned_cols=88 Identities=14% Similarity=0.278 Sum_probs=72.4
Q ss_pred cCccccccc--CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEe
Q 039441 188 FSQKSHLLR--GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSN 265 (539)
Q Consensus 188 f~~~s~~l~--gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N 265 (539)
|+.+-=+|+ |+ .+.+.+-.+.|++=...||.|-=+-+|+++|+|.|..+..| .++.|++|.++++-+-=.|+|..
T Consensus 21 w~SrRlll~~Dgm-GFS~h~T~i~aGtet~~~YknHlEAvyci~G~Gev~~~~~G--~~~~i~pGt~YaLd~hD~H~lra 97 (126)
T PF06339_consen 21 WESRRLLLKDDGM-GFSFHETTIYAGTETHIHYKNHLEAVYCIEGEGEVEDLDTG--EVHPIKPGTMYALDKHDRHYLRA 97 (126)
T ss_pred ceEEEEEEccCCC-CEEEEEEEEeCCCeeEEEecCceEEEEEEeceEEEEEccCC--cEEEcCCCeEEecCCCccEEEEe
Confidence 444333455 33 35566666799999999999999999999999999998644 78999999999999999999998
Q ss_pred cCCCceEEEEEEeccC
Q 039441 266 QDNVDRLHVAKLLQPV 281 (539)
Q Consensus 266 ~g~~e~L~iv~l~d~~ 281 (539)
.. +|+++++|.|.
T Consensus 98 ~~---dm~~vCVFnPp 110 (126)
T PF06339_consen 98 KT---DMRLVCVFNPP 110 (126)
T ss_pred cC---CEEEEEEcCCC
Confidence 64 79999999974
No 85
>PRK13500 transcriptional activator RhaR; Provisional
Probab=96.59 E-value=0.0065 Score=63.05 Aligned_cols=55 Identities=16% Similarity=0.404 Sum_probs=47.2
Q ss_pred CCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441 209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD 267 (539)
Q Consensus 209 ~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g 267 (539)
-|.....||||+.-+|+||++|.|.+.+ +...+.|.+|||++||+|.+|.+....
T Consensus 56 ~~~~~~~~H~H~~~el~~v~~G~g~~~v----~~~~~~l~~Gdl~~I~~~~~H~~~~~~ 110 (312)
T PRK13500 56 YPQDVFAEHTHDFCELVIVWRGNGLHVL----NDRPYRITRGDLFYIHADDKHSYASVN 110 (312)
T ss_pred CCCCCCCccccceEEEEEEEcCeEEEEE----CCEEEeecCCeEEEECCCCeecccccC
Confidence 4555567999999999999999999776 336899999999999999999988754
No 86
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=96.55 E-value=0.0045 Score=62.61 Aligned_cols=63 Identities=16% Similarity=0.254 Sum_probs=47.2
Q ss_pred CCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEE
Q 039441 367 QGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIAL 446 (539)
Q Consensus 367 pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i 446 (539)
-+..+.||||.+-.+|+||++|.+.+.+ .+ + ...+.+||+++||+|.+|.+
T Consensus 32 ~~~~~~~H~H~~~~~l~~~~~G~~~~~~--~~-------------------------~--~~~l~~g~~~ii~~~~~H~~ 82 (287)
T TIGR02297 32 FGRNMPVHFHDRYYQLHYLTEGSIALQL--DE-------------------------H--EYSEYAPCFFLTPPSVPHGF 82 (287)
T ss_pred cCCCCCCcccccceeEEEEeeCceEEEE--CC-------------------------E--EEEecCCeEEEeCCCCcccc
Confidence 3456899999447899999999997655 21 1 25799999999999999998
Q ss_pred EcCCCCcEEEEE
Q 039441 447 VASPNEKLLTVG 458 (539)
Q Consensus 447 ~n~gne~l~~v~ 458 (539)
....+....++.
T Consensus 83 ~~~~~~~~~~i~ 94 (287)
T TIGR02297 83 VTDLDADGHVLT 94 (287)
T ss_pred ccCCCcceEEEE
Confidence 765443333343
No 87
>PRK13503 transcriptional activator RhaS; Provisional
Probab=96.50 E-value=0.0056 Score=61.51 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=44.8
Q ss_pred cCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEE
Q 039441 366 NQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIA 445 (539)
Q Consensus 366 ~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~ 445 (539)
.+.....+||| +..+|+||++|.+.+.|=.. ...|++||+++||+|-+|.
T Consensus 23 ~~~~~~~~H~H-~~~ei~~v~~G~~~~~i~~~-----------------------------~~~l~~g~~~~i~~~~~h~ 72 (278)
T PRK13503 23 LPQAAFPEHHH-DFHEIVIVEHGTGIHVFNGQ-----------------------------PYTLSGGTVCFVRDHDRHL 72 (278)
T ss_pred Ccccccccccc-CceeEEEEecCceeeEecCC-----------------------------cccccCCcEEEECCCccch
Confidence 45566789999 99999999999998765433 2579999999999999998
Q ss_pred EEcCC
Q 039441 446 LVASP 450 (539)
Q Consensus 446 i~n~g 450 (539)
..+..
T Consensus 73 ~~~~~ 77 (278)
T PRK13503 73 YEHTD 77 (278)
T ss_pred hhhcc
Confidence 76653
No 88
>PRK13501 transcriptional activator RhaR; Provisional
Probab=96.48 E-value=0.0074 Score=61.56 Aligned_cols=51 Identities=20% Similarity=0.364 Sum_probs=45.3
Q ss_pred eecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441 213 LVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD 267 (539)
Q Consensus 213 l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g 267 (539)
-+.|||||--++.||++|+|++.+ +...+.+.+||++.||+|.+|++...+
T Consensus 30 ~~~~H~H~~~ei~~i~~G~~~~~i----~~~~~~l~~g~~~~I~p~~~H~~~~~~ 80 (290)
T PRK13501 30 TFVEHTHQFCEIVIVWRGNGLHVL----NDHPYRITCGDVFYIQAADHHSYESVH 80 (290)
T ss_pred CCccccccceeEEEEecCceEEEE----CCeeeeecCCeEEEEcCCCcccccccC
Confidence 355899999999999999999987 347899999999999999999988654
No 89
>PF14499 DUF4437: Domain of unknown function (DUF4437); PDB: 2QDR_A.
Probab=96.39 E-value=0.0075 Score=61.37 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=48.4
Q ss_pred cceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441 356 IDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV 435 (539)
Q Consensus 356 l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV 435 (539)
-+-+..+|.+.+|=...|||| +++.-+||++|..... +. +....-|.+|.-
T Consensus 34 ~g~~~~~vkf~~g~~~pph~H-~~~~~~~Vi~G~~~~~----~~------------------------~a~~~~l~~Gsy 84 (251)
T PF14499_consen 34 DGPSGMRVKFPAGFSSPPHIH-NADYRGTVISGELHNG----DP------------------------KAAAMWLPAGSY 84 (251)
T ss_dssp TS-EEEEEEE-TT-EE--BEE-SS-EEEEEEESEEEET----TE------------------------E-----E-TTEE
T ss_pred CCcceEEEEcCCCccCCCcce-eeeEEEEEEEeEEEcC----CC------------------------cccceecCCCce
Confidence 367889999999999999999 9999999999975542 21 122346999999
Q ss_pred EEeCCCCeEEEEcCCCCcEEEEEE
Q 039441 436 FIIPPGHPIALVASPNEKLLTVGF 459 (539)
Q Consensus 436 ~vVPaG~~h~i~n~gne~l~~v~F 459 (539)
+..|+|.+|+..+.+.+.+.|+.+
T Consensus 85 ~~~PaG~~h~~~~~~~~~~~~~e~ 108 (251)
T PF14499_consen 85 WFQPAGEPHITAAEGETNLLFIEI 108 (251)
T ss_dssp EEE-TT-EEEETTS-EE-EEEEE-
T ss_pred EeccCCCceeeeccCccEEEEEEe
Confidence 999999999998887777777743
No 90
>PRK13503 transcriptional activator RhaS; Provisional
Probab=96.36 E-value=0.0067 Score=60.99 Aligned_cols=54 Identities=20% Similarity=0.393 Sum_probs=45.6
Q ss_pred CCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441 210 PSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD 267 (539)
Q Consensus 210 P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g 267 (539)
|.....+||++.-+|+||++|.+.+.+ +...+.|.+||++.||+|.+|.+.+.+
T Consensus 24 ~~~~~~~H~H~~~ei~~v~~G~~~~~i----~~~~~~l~~g~~~~i~~~~~h~~~~~~ 77 (278)
T PRK13503 24 PQAAFPEHHHDFHEIVIVEHGTGIHVF----NGQPYTLSGGTVCFVRDHDRHLYEHTD 77 (278)
T ss_pred ccccccccccCceeEEEEecCceeeEe----cCCcccccCCcEEEECCCccchhhhcc
Confidence 344556799999999999999998776 224799999999999999999887764
No 91
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=96.21 E-value=0.11 Score=54.51 Aligned_cols=59 Identities=25% Similarity=0.389 Sum_probs=40.7
Q ss_pred ceeEEEEEEcC-CceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441 357 DAGVTYVEINQ-GGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV 435 (539)
Q Consensus 357 ~isva~v~L~p-Ggm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV 435 (539)
+.++....+.. ..+... .+..|++|++|.|.+..= + ++ ..|++|+.
T Consensus 241 ~F~l~~~~i~~~~~~~~~----~~~~il~v~eG~~~l~~~---~------------------------~~--~~l~~G~s 287 (312)
T COG1482 241 DFALYKWDISGTAEFIKQ----ESFSILLVLEGEGTLIGG---G------------------------QT--LKLKKGES 287 (312)
T ss_pred ceEEEEEeccChhhhccC----CCcEEEEEEcCeEEEecC---C------------------------EE--EEEcCCcE
Confidence 35666677764 333322 478999999999987432 2 23 57999999
Q ss_pred EEeCCCCeEEEEc
Q 039441 436 FIIPPGHPIALVA 448 (539)
Q Consensus 436 ~vVPaG~~h~i~n 448 (539)
++||+...-|.+-
T Consensus 288 ~~ipa~~~~~~i~ 300 (312)
T COG1482 288 FFIPANDGPYTIE 300 (312)
T ss_pred EEEEcCCCcEEEE
Confidence 9999995555444
No 92
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=96.13 E-value=0.04 Score=59.95 Aligned_cols=166 Identities=14% Similarity=0.191 Sum_probs=89.7
Q ss_pred ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEecc-CCCC------------
Q 039441 218 HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQP-VNTP------------ 284 (539)
Q Consensus 218 ~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~-~n~p------------ 284 (539)
-+|.++++|+.+|++.|..-.- ...|++||+++||.|+.+.+.=.++..++.|+=++.. ...|
T Consensus 151 NaDGD~Livpq~G~l~i~TEfG----~L~v~pgei~VIPRG~~frv~l~~gp~rgyi~E~~g~~f~LPdlGpiG~nglan 226 (438)
T PRK05341 151 NADGELLIVPQQGRLRLATELG----VLDVEPGEIAVIPRGVKFRVELPDGPARGYVCENYGAPFRLPDLGPIGANGLAN 226 (438)
T ss_pred cCCCCEEEEEEeCCEEEEEecc----ceEecCCCEEEEcCccEEEEecCCCCeeEEEEEecCCcccCCCCCcccccCCCC
Confidence 4799999999999999876321 4678999999999999998874332344444444431 1111
Q ss_pred -CCcee-----cc--ccCccEEEcChhhhhhcC----ccccccCCCCCCCCcceecCCCCCc--cc-----CCCceEEEe
Q 039441 285 -GQFRV-----QQ--RQQGTIKRASQEQLKALS----HHASSRRRHGRGSTAPFNLLSRKPI--YN-----NNFGRFFEA 345 (539)
Q Consensus 285 -g~f~~-----~~--q~~G~Ivrv~~eql~~l~----~~~~~~~~~~~~~~~~fnl~~~~p~--~s-----n~~G~i~~~ 345 (539)
..|.. .. .+--+|+|.. +++.... |-.-- .|.++-.+..|||..-.|+ ++ +..-.+.++
T Consensus 227 pRDF~~P~a~~ed~~~~~~vv~K~~-G~l~~~~~~hsPfDVV-aWhGn~~Pykydl~~F~pi~svs~dH~dPSI~tvlta 304 (438)
T PRK05341 227 PRDFLTPVAAFEDREGPFELVAKFG-GRLWRAEIDHSPLDVV-AWHGNYAPYKYDLRRFNTIGSISFDHPDPSIFTVLTS 304 (438)
T ss_pred hhHcCCCcchhcccCCCEEEEEEeC-CeeEEEecCCCCceEe-eecCcccceEeehhheeeccccccccCCCCceEEEec
Confidence 11111 00 0111344442 2232221 10000 1234445667788655444 11 111222333
Q ss_pred CCcccccccccceeEE--EEEEcCCceecceecCC-CCEEEEEEeceE
Q 039441 346 TPKDYQQLQEIDAGVT--YVEINQGGMMVPHYNSK-ATTIVLVVEGRG 390 (539)
Q Consensus 346 ~~~~fP~L~~l~isva--~v~L~pGgm~~PHwhpn-A~ei~yV~~G~g 390 (539)
. .+.|.....|+-+. +--..++++..|.||.| .+|+++.+.|.-
T Consensus 305 p-s~~pg~a~~dFVIF~PRw~v~e~TfrpPyyHrNv~sEfmgli~G~y 351 (438)
T PRK05341 305 P-SDTPGTANIDFVIFPPRWLVAENTFRPPWFHRNVMSEFMGLIHGVY 351 (438)
T ss_pred c-CCCCCccccceEEECCcccCCCCccCCCCCccchhhhhhhhccccc
Confidence 2 23444333333221 11237999999999988 568888888864
No 93
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=96.09 E-value=0.051 Score=58.95 Aligned_cols=56 Identities=16% Similarity=0.293 Sum_probs=42.1
Q ss_pred ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441 218 HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL 278 (539)
Q Consensus 218 ~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~ 278 (539)
-+|.++++|+.+|.+.|..-.- ...|++||+++||.|+.|.+.=.+ ..++.|+=++
T Consensus 145 NaDGD~Livpq~G~l~i~TEfG----~L~v~pgei~VIPRG~~frv~l~g-p~rgyi~E~~ 200 (429)
T TIGR01015 145 NADGDFLIVPQQGALLITTEFG----RLLVEPNEICVIPRGVRFRVTVLE-PARGYICEVY 200 (429)
T ss_pred ccCCCEEEEEEeCcEEEEEecc----ceEecCCCEEEecCccEEEEeeCC-CceEEEEecc
Confidence 3799999999999998875321 457999999999999998887554 3444444333
No 94
>PRK13502 transcriptional activator RhaR; Provisional
Probab=96.05 E-value=0.013 Score=59.29 Aligned_cols=54 Identities=15% Similarity=0.401 Sum_probs=45.6
Q ss_pred CCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441 210 PSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD 267 (539)
Q Consensus 210 P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g 267 (539)
|+-...|||++.-++.||++|.|.+.+ ...++.+.+||++.||+|.+|.+...+
T Consensus 27 ~~~~~~~H~h~~~~l~~v~~G~~~~~i----~~~~~~l~~g~l~li~~~~~H~~~~~~ 80 (282)
T PRK13502 27 PQDVFAEHTHEFCELVMVWRGNGLHVL----NERPYRITRGDLFYIRAEDKHSYTSVN 80 (282)
T ss_pred CCCCCCccccceEEEEEEecCcEEEEE----CCEEEeecCCcEEEECCCCcccccccC
Confidence 334456899999999999999999886 335799999999999999999987654
No 95
>PF06249 EutQ: Ethanolamine utilisation protein EutQ; InterPro: IPR010424 The eut operon of Salmonella typhimurium encodes proteins involved in the cobalamin-dependent degradation of ethanolamine. The role of EutQ in this process is unclear [].; PDB: 2PYT_B 3LWC_A.
Probab=95.92 E-value=0.026 Score=53.39 Aligned_cols=61 Identities=21% Similarity=0.352 Sum_probs=44.6
Q ss_pred ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441 357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF 436 (539)
Q Consensus 357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~ 436 (539)
.|++.++.|.... ..|..+-+||-||++|+..+. .. | +++ ..++|||+
T Consensus 76 ~l~~Gf~~le~~~---f~wtl~YDEi~~VlEG~L~i~--~~-G------------------------~~~--~A~~GDvi 123 (152)
T PF06249_consen 76 RLSAGFMELEKTS---FPWTLTYDEIKYVLEGTLEIS--ID-G------------------------QTV--TAKPGDVI 123 (152)
T ss_dssp SSEEEEEEEEEEE---EEEE-SSEEEEEEEEEEEEEE--ET-T------------------------EEE--EEETT-EE
T ss_pred ceeeEEEEEeCCC---ccEEeecceEEEEEEeEEEEE--EC-C------------------------EEE--EEcCCcEE
Confidence 5889999999853 469999999999999976665 33 3 344 57999999
Q ss_pred EeCCCCeEEEEcC
Q 039441 437 IIPPGHPIALVAS 449 (539)
Q Consensus 437 vVPaG~~h~i~n~ 449 (539)
+||.|.-+.+-..
T Consensus 124 ~iPkGs~I~fst~ 136 (152)
T PF06249_consen 124 FIPKGSTITFSTP 136 (152)
T ss_dssp EE-TT-EEEEEEE
T ss_pred EECCCCEEEEecC
Confidence 9999999887554
No 96
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=95.86 E-value=0.055 Score=53.06 Aligned_cols=91 Identities=21% Similarity=0.303 Sum_probs=52.2
Q ss_pred EEEEcC-CceecceecCCCCEEEEEEeceEEEEEecCCCCc----cchhh-hhhhhH---HHHHHh---hhcceeeEEee
Q 039441 362 YVEINQ-GGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSR----WSQES-QREQQE---EEEEEE---SSRELQKISAN 429 (539)
Q Consensus 362 ~v~L~p-Ggm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~----~s~~~-~~g~~~---~~~~e~---~~~~y~~~~~~ 429 (539)
.+-|.+ |+....||.+ .+.|..++.|+=++.++.|.-.. ..... +..-.. ..-... .....+.+...
T Consensus 134 ~l~ig~~gs~t~lH~D~-~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~ 212 (251)
T PF13621_consen 134 NLWIGPPGSFTPLHYDP-SHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVV 212 (251)
T ss_dssp EEEEE-TTEEEEEEE-S-SEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEE
T ss_pred EEEEeCCCceeeeeECc-hhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEE
Confidence 344444 7788899986 78999999999999999997433 00000 000000 000000 01112567789
Q ss_pred eCCCcEEEeCCCCeEEEEcCCCCc
Q 039441 430 LSPGVVFIIPPGHPIALVASPNEK 453 (539)
Q Consensus 430 L~~GDV~vVPaG~~h~i~n~gne~ 453 (539)
|++|||++||+|+.|++.|..+++
T Consensus 213 l~pGD~LfiP~gWwH~V~~~~~~~ 236 (251)
T PF13621_consen 213 LEPGDVLFIPPGWWHQVENLSDDD 236 (251)
T ss_dssp EETT-EEEE-TT-EEEEEESTTSS
T ss_pred ECCCeEEEECCCCeEEEEEcCCCC
Confidence 999999999999999999983333
No 97
>TIGR02297 HpaA 4-hydroxyphenylacetate catabolism regulatory protein HpaA. This putative transcriptional regulator, which contains both the substrate-binding, dimerization domain (pfam02311) and the helix-turn-helix DNA-binding domain (pfam00165) of the AraC famil, is located proximal to genes of the 4-hydroxyphenylacetate catabolism pathway.
Probab=95.85 E-value=0.018 Score=58.29 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=44.6
Q ss_pred eeecccccC-CCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441 212 TLVVPHHSD-AETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN 268 (539)
Q Consensus 212 ~l~lPh~~d-A~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~ 268 (539)
....||||+ --++.||++|.+.+.+ .+ ..+.+.+||++.||+|.+|.+....+
T Consensus 34 ~~~~~H~H~~~~~l~~~~~G~~~~~~--~~--~~~~l~~g~~~ii~~~~~H~~~~~~~ 87 (287)
T TIGR02297 34 RNMPVHFHDRYYQLHYLTEGSIALQL--DE--HEYSEYAPCFFLTPPSVPHGFVTDLD 87 (287)
T ss_pred CCCCCcccccceeEEEEeeCceEEEE--CC--EEEEecCCeEEEeCCCCccccccCCC
Confidence 456799998 6899999999998666 22 48899999999999999999987653
No 98
>COG4297 Uncharacterized protein containing double-stranded beta helix domain [Function unknown]
Probab=95.82 E-value=0.014 Score=53.99 Aligned_cols=58 Identities=24% Similarity=0.434 Sum_probs=43.0
Q ss_pred cc-ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441 216 PH-HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK 276 (539)
Q Consensus 216 Ph-~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~ 276 (539)
.| |++|.+++-|+.|++.|-+=-+++. ...|.+||++.||||+.|--.-. +-++.|+.
T Consensus 58 HHYHs~aHEVl~vlrgqA~l~iGG~~G~-el~v~~GDvlliPAGvGH~rl~s--S~DF~VvG 116 (163)
T COG4297 58 HHYHSGAHEVLGVLRGQAGLQIGGADGQ-ELEVGEGDVLLIPAGVGHCRLHS--SADFQVVG 116 (163)
T ss_pred ccccCCcceEEEEecceeEEEecCCCCc-eeeecCCCEEEEecCcccccccC--CCCeEEEc
Confidence 44 5799999999999998877555544 56799999999999999844332 23444443
No 99
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=95.76 E-value=0.15 Score=49.42 Aligned_cols=73 Identities=18% Similarity=0.122 Sum_probs=54.9
Q ss_pred cCCceecceecCC--CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeeeCC--CcEEEeCC
Q 039441 366 NQGGMMVPHYNSK--ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANLSP--GVVFIIPP 440 (539)
Q Consensus 366 ~pGgm~~PHwhpn--A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L~~--GDV~vVPa 440 (539)
.+|.++.+|++.. -+++++|++|+...-+|+..-.+ ..| +.....|.+ +..++||.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~S-------------------pTfG~~~~~~L~~~~~~~l~IP~ 112 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNS-------------------PTFGKWVGVLLSAENKRQLWIPE 112 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCc-------------------CCCCeEEEEEECCCCCCEEEeCC
Confidence 6799999999843 68999999999999999975322 111 234456766 67999999
Q ss_pred CCeEEEEcCCCCcEEEEE
Q 039441 441 GHPIALVASPNEKLLTVG 458 (539)
Q Consensus 441 G~~h~i~n~gne~l~~v~ 458 (539)
|++|-..+.+++ ..++-
T Consensus 113 G~aHGF~~L~d~-a~v~Y 129 (176)
T TIGR01221 113 GFAHGFVVLSDE-AEFLY 129 (176)
T ss_pred cceeEEEEcCCC-eEEEE
Confidence 999999997654 44443
No 100
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=95.72 E-value=0.02 Score=51.89 Aligned_cols=58 Identities=24% Similarity=0.350 Sum_probs=45.9
Q ss_pred EEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEec
Q 039441 204 AILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQ 266 (539)
Q Consensus 204 ~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~ 266 (539)
.|-+..|+.++. ..+.++.+|+++|++.++ ++.-+...|++||+++||+|+.--|-=.
T Consensus 48 GiWe~TpG~~r~--~y~~~E~chil~G~v~~T---~d~Ge~v~~~aGD~~~~~~G~~g~W~V~ 105 (116)
T COG3450 48 GIWECTPGKFRV--TYDEDEFCHILEGRVEVT---PDGGEPVEVRAGDSFVFPAGFKGTWEVL 105 (116)
T ss_pred eEEEecCccceE--EcccceEEEEEeeEEEEE---CCCCeEEEEcCCCEEEECCCCeEEEEEe
Confidence 456667777764 345699999999999877 6778899999999999999987654433
No 101
>PLN02658 homogentisate 1,2-dioxygenase
Probab=95.61 E-value=0.11 Score=56.60 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=42.6
Q ss_pred ccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441 218 HSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL 278 (539)
Q Consensus 218 ~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~ 278 (539)
-+|.++++|+.+|.+.|..-.- ...|++||+++||.|+.+.+.=.++..++.|+=++
T Consensus 144 NaDGD~Livpq~G~l~i~TEfG----~L~v~pgei~VIPRG~~frv~l~~gp~rgyv~E~~ 200 (435)
T PLN02658 144 NADGDFLIVPQQGRLWIKTELG----KLQVSPGEIVVIPRGFRFAVDLPDGPSRGYVLEIF 200 (435)
T ss_pred cCCCCEEEEEEeCCEEEEEecc----ceEecCCCEEEecCccEEEEecCCCCeeEEEEeec
Confidence 4799999999999998875321 45789999999999999888743333444444444
No 102
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=95.60 E-value=0.14 Score=49.52 Aligned_cols=77 Identities=17% Similarity=0.132 Sum_probs=55.2
Q ss_pred EcCCceecceecCCC---CEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcce-eeEEeeeCCCc--EEEe
Q 039441 365 INQGGMMVPHYNSKA---TTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSREL-QKISANLSPGV--VFII 438 (539)
Q Consensus 365 L~pGgm~~PHwhpnA---~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y-~~~~~~L~~GD--V~vV 438 (539)
-.+|.++.+||+..- ++++.|++|+...-+|+.--.+ +.| +.....|.+++ .++|
T Consensus 50 s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~S-------------------pTfg~~~~~~Ls~~n~~~l~I 110 (176)
T PF00908_consen 50 SKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGS-------------------PTFGKWVSVELSAENPRQLYI 110 (176)
T ss_dssp EETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTS-------------------TTTT-EEEEEEETTT--EEEE
T ss_pred ccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCC-------------------CCCCEEEEEEeCccccCEEEe
Confidence 346999999999876 7999999999999999864221 111 35567786665 8999
Q ss_pred CCCCeEEEEcCCCCcEEEEEEee
Q 039441 439 PPGHPIALVASPNEKLLTVGFSL 461 (539)
Q Consensus 439 PaG~~h~i~n~gne~l~~v~F~~ 461 (539)
|+|++|-..+.+++ ..++.+.+
T Consensus 111 P~G~aHGf~~l~d~-a~v~Y~~t 132 (176)
T PF00908_consen 111 PPGVAHGFQTLEDD-AEVLYKVT 132 (176)
T ss_dssp -TTEEEEEEESSSE-EEEEEEES
T ss_pred CCcceeeEEeccCc-eEEEEecC
Confidence 99999999998654 44444333
No 103
>COG1741 Pirin-related protein [General function prediction only]
Probab=95.59 E-value=1.2 Score=46.14 Aligned_cols=208 Identities=17% Similarity=0.118 Sum_probs=113.2
Q ss_pred eCCCeeeccc-ccCCCcEEEEEeceEEEEEEeCC-CceeeecCCCcEEEeCCC--CeEEEEec-CCCceEEEEEEeccCC
Q 039441 208 ANPSTLVVPH-HSDAETILVLLKGKGVITLVSHE-RRESFNMEHGDVISVPAG--TTYYLSNQ-DNVDRLHVAKLLQPVN 282 (539)
Q Consensus 208 l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg-~~~~~~v~~GDV~~iPaG--~~h~i~N~-g~~e~L~iv~l~d~~n 282 (539)
+.|+..+-|| |.+-+-|.||++|+. -+.+ .-..-.+++|||-.+-|| +.|+=.|. ..+..|..+-+.-.
T Consensus 51 ~~pG~~f~pHPHrg~etvTyvl~G~i----~HrDS~Gn~~~i~pGdvqwMTAG~GI~HSE~~~~~~~~~l~~~QlWv~-- 124 (276)
T COG1741 51 LAPGRGFPPHPHRGLETVTYVLDGEI----EHRDSLGNKGVIRPGDVQWMTAGSGIVHSEMNPPSTGKPLHGLQLWVN-- 124 (276)
T ss_pred ccCCCcCCCCCCCCcEEEEEEEccEE----EEeecCCceeeecccceeEEcCCCceeecccCCccCCCccceeeeecC--
Confidence 3788888899 999999999999983 2222 123557889998888775 45665665 23344543333210
Q ss_pred CCCCceeccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCceEEEeCCc----ccccccccce
Q 039441 283 TPGQFRVQQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEATPK----DYQQLQEIDA 358 (539)
Q Consensus 283 ~pg~f~~~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~~~~----~fP~L~~l~i 358 (539)
++.. -+.+.|.. ..+.+...-|.... +..++.+... ..|+-... +
T Consensus 125 -----------------lP~~-~k~~~P~y-----------q~~~~~~~~p~~~~-g~~~rvi~G~~~g~~~pv~~~~-~ 173 (276)
T COG1741 125 -----------------LPAA-DKMIAPRY-----------QHLAFPDEIPRVEL-GLTARVIAGRDGGLSSPVRQDS-L 173 (276)
T ss_pred -----------------Cchh-hccCCccc-----------ccccCcccCceeec-ceEEEEeccccCCcccccccce-e
Confidence 1000 01111110 01111223333333 3334423322 34665565 7
Q ss_pred eEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEe
Q 039441 359 GVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFII 438 (539)
Q Consensus 359 sva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vV 438 (539)
-...+.+.+|+-+..+ -..-.-++||++|...+ ...+ .-.+|=++|
T Consensus 174 ~~~dl~l~~g~~~~l~-~~~~~~~l~v~~G~l~v--~g~~-------------------------------~~~~~~l~i 219 (276)
T COG1741 174 HYVDLRLEAGARLQLP-PAGRRAYLYVIEGTLEV--NGQH-------------------------------ETDGDGLAI 219 (276)
T ss_pred EEEEEEeCCCceEecC-CCCceEEEEEEEeEEEE--cccc-------------------------------cccccceEE
Confidence 7888889999988876 33456899999996544 2211 022333344
Q ss_pred CCCCeEEEEcCCCCcEEEEEEeecCCCCccccccccchhcccCcHHHHHHHc
Q 039441 439 PPGHPIALVASPNEKLLTVGFSLNARNNQRNFLAGKINIMNQVERETMEVAF 490 (539)
Q Consensus 439 PaG~~h~i~n~gne~l~~v~F~~na~n~~~~fLAG~~svL~~~p~evLa~AF 490 (539)
..|--..+.+..+.+..++-|.-.+ -+.+.+.-| ++.. -+++-|+.||
T Consensus 220 ~~g~~i~l~a~~~~~a~vLL~~g~P-~~~~~~~~g--~fV~-~s~e~i~~a~ 267 (276)
T COG1741 220 LDGDEITLVADSPAGARVLLLDGPP-LGEPIVIYG--PFVM-NSKEEIEQAK 267 (276)
T ss_pred ecCCeEEEEecCCCCeEEEEEcCCC-CCCceeEEC--Cccc-CCHHHHHHHH
Confidence 4455445566556667777766554 333333333 2222 3566666665
No 104
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=95.57 E-value=0.077 Score=50.03 Aligned_cols=75 Identities=19% Similarity=0.308 Sum_probs=56.2
Q ss_pred ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEe
Q 039441 199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLL 278 (539)
Q Consensus 199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~ 278 (539)
..+...+|+++| -.+|...+-|++-||+.|+--|.+ .| .+..-.+||||+||.|.-.=+--.+. .+++.+.
T Consensus 98 ~~l~aG~m~~~~--~tf~wtl~yDe~d~VlEGrL~V~~--~g--~tv~a~aGDvifiPKgssIefst~ge---a~flyvt 168 (176)
T COG4766 98 SRLGAGLMEMKN--TTFPWTLNYDEIDYVLEGRLHVRI--DG--RTVIAGAGDVIFIPKGSSIEFSTTGE---AKFLYVT 168 (176)
T ss_pred Cccccceeeecc--ccCcceecccceeEEEeeeEEEEE--cC--CeEecCCCcEEEecCCCeEEEeccce---EEEEEEE
Confidence 345567888899 456888999999999999865543 44 24456899999999999877776653 6677777
Q ss_pred ccCC
Q 039441 279 QPVN 282 (539)
Q Consensus 279 d~~n 282 (539)
-|.|
T Consensus 169 yPan 172 (176)
T COG4766 169 YPAN 172 (176)
T ss_pred cccc
Confidence 6654
No 105
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=95.50 E-value=0.77 Score=47.17 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=44.2
Q ss_pred CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEe-----CC-CceeeecCCCcEEEeCCCCeEEEEecCCCc
Q 039441 197 GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVS-----HE-RRESFNMEHGDVISVPAGTTYYLSNQDNVD 270 (539)
Q Consensus 197 gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~-----pg-~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e 270 (539)
|.....+.+|+|+++.-+.-.--+-...+.++.|+++|++=. -+ ....|+ ...|.++||.|+..-|.+.++
T Consensus 23 g~~~~~~~~l~L~~g~~~~~~~~~~E~~vv~l~G~~~v~~~g~~~~~l~~R~~vF~-~~~d~lYvp~g~~~~i~a~~~-- 99 (261)
T PF04962_consen 23 GWMYMGFGVLRLEAGESLEFELERRELGVVNLGGKATVTVDGEEFYELGGRESVFD-GPPDALYVPRGTKVVIFASTD-- 99 (261)
T ss_dssp CCCCBECCCEEEECCHCCCCCCCSEEEEEEEESSSEEEEETTEEEEEE-TTSSGGG-S--EEEEE-TT--EEEEESST--
T ss_pred CccccceEEEEecCCCEEeccCCCcEEEEEEeCCEEEEEeCCceEEEecccccccC-CCCcEEEeCCCCeEEEEEcCC--
Confidence 444555566777887655444333445556789999999811 01 122344 566999999999999999653
Q ss_pred eEEEEE
Q 039441 271 RLHVAK 276 (539)
Q Consensus 271 ~L~iv~ 276 (539)
++|+.
T Consensus 100 -ae~~~ 104 (261)
T PF04962_consen 100 -AEFAV 104 (261)
T ss_dssp -EEEEE
T ss_pred -CEEEE
Confidence 54443
No 106
>PLN02288 mannose-6-phosphate isomerase
Probab=95.39 E-value=0.11 Score=56.20 Aligned_cols=60 Identities=25% Similarity=0.413 Sum_probs=41.5
Q ss_pred ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441 357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF 436 (539)
Q Consensus 357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~ 436 (539)
+.++..+.|.+|.-.. ....+...|++|++|++.+.. ..+ ..+..|++|+++
T Consensus 333 eF~v~~~~l~~~~~~~-~~~~~gp~Illv~~G~~~i~~--~~~-------------------------~~~~~l~~G~~~ 384 (394)
T PLN02288 333 EFEVDHCDVPPGASVV-FPAVPGPSVFLVIEGEGVLST--GSS-------------------------EDGTAAKRGDVF 384 (394)
T ss_pred ceEEEEEEeCCCCeEe-ecCCCCCEEEEEEcCEEEEec--CCc-------------------------cceEEEeceeEE
Confidence 4677778887775321 222468899999999998732 111 123569999999
Q ss_pred EeCCCCeE
Q 039441 437 IIPPGHPI 444 (539)
Q Consensus 437 vVPaG~~h 444 (539)
+||++...
T Consensus 385 fv~a~~~~ 392 (394)
T PLN02288 385 FVPAGTEI 392 (394)
T ss_pred EEeCCCcc
Confidence 99998754
No 107
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=95.34 E-value=0.02 Score=54.46 Aligned_cols=57 Identities=23% Similarity=0.391 Sum_probs=48.9
Q ss_pred CeeecccccCCCcEEEEEeceEEEEEEeCCCcee-eecCCCcEEEeCCCCeEEEEecC
Q 039441 211 STLVVPHHSDAETILVLLKGKGVITLVSHERRES-FNMEHGDVISVPAGTTYYLSNQD 267 (539)
Q Consensus 211 ~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~-~~v~~GDV~~iPaG~~h~i~N~g 267 (539)
..|+.+|-+.-++|-||+.|.|-.-+-+.+...+ --|+.||+|.||||+-|-+.-+.
T Consensus 83 k~FfEEhlh~deeiR~il~GtgYfDVrd~dd~WIRi~vekGDlivlPaGiyHRFTtt~ 140 (179)
T KOG2107|consen 83 KSFFEEHLHEDEEIRYILEGTGYFDVRDKDDQWIRIFVEKGDLIVLPAGIYHRFTTTP 140 (179)
T ss_pred HHHHHHhcCchhheEEEeecceEEeeccCCCCEEEEEEecCCEEEecCcceeeeecCc
Confidence 3578999999999999999999999887776665 46899999999999999877654
No 108
>PF12852 Cupin_6: Cupin
Probab=94.97 E-value=0.066 Score=51.17 Aligned_cols=57 Identities=26% Similarity=0.461 Sum_probs=44.9
Q ss_pred CCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441 209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN 268 (539)
Q Consensus 209 ~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~ 268 (539)
.|-++..|.-. ...+.||++|++.+.+ ++......|++||++.+|.|.+|++....+
T Consensus 24 ~~W~~~~~~~~-~~~fh~V~~G~~~l~~--~~~~~~~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 24 GPWGLRFPGSP-GASFHVVLRGSCWLRV--PGGGEPIRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred CCcEEeccCCC-ceEEEEEECCeEEEEE--cCCCCeEEecCCCEEEEcCCCCeEeCCCCC
Confidence 44556555543 4788899999999883 554578999999999999999999976653
No 109
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=94.89 E-value=0.22 Score=48.81 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=43.2
Q ss_pred eCCCeeecccccCCCcEEEEEeceEEEEEEeCCCc------------------------------------eeeecCCCc
Q 039441 208 ANPSTLVVPHHSDAETILVLLKGKGVITLVSHERR------------------------------------ESFNMEHGD 251 (539)
Q Consensus 208 l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~------------------------------------~~~~v~~GD 251 (539)
-.+++..-.||-..+-|+-++.|+=++.++.|... ....|++||
T Consensus 138 g~~gs~t~lH~D~~~n~~~~i~G~K~~~L~pP~~~~~l~~~~~~~~~~~~~~~d~~~~d~~~~p~~~~~~~~~~~l~pGD 217 (251)
T PF13621_consen 138 GPPGSFTPLHYDPSHNLLAQIRGRKRWILFPPDDSPNLYPRPDSHGGTVFSWVDPDNPDLERFPKFRKAPPYEVVLEPGD 217 (251)
T ss_dssp E-TTEEEEEEE-SSEEEEEEEESEEEEEEE-GGGGGGCTBETTTST-TCBBSS-TTS--TTT-CGGGG--EEEEEEETT-
T ss_pred eCCCceeeeeECchhhhhhccCCCEEEEEECCccccccccceecccccceeeeeccChhhhhhhhhccCceeEEEECCCe
Confidence 34566666676567889999999999999998731 014699999
Q ss_pred EEEeCCCCeEEEEec
Q 039441 252 VISVPAGTTYYLSNQ 266 (539)
Q Consensus 252 V~~iPaG~~h~i~N~ 266 (539)
|++||+|..|++.|.
T Consensus 218 ~LfiP~gWwH~V~~~ 232 (251)
T PF13621_consen 218 VLFIPPGWWHQVENL 232 (251)
T ss_dssp EEEE-TT-EEEEEES
T ss_pred EEEECCCCeEEEEEc
Confidence 999999999999999
No 110
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=94.76 E-value=0.24 Score=52.02 Aligned_cols=87 Identities=26% Similarity=0.337 Sum_probs=48.2
Q ss_pred eEEEEEEcCCc--eecceecCCCCEEEEEEeceEEEEEecCCCCc---cchhhhhhhhHHHHHHhhhcceeeEEeeeCCC
Q 039441 359 GVTYVEINQGG--MMVPHYNSKATTIVLVVEGRGRFEMGGPLSSR---WSQESQREQQEEEEEEESSRELQKISANLSPG 433 (539)
Q Consensus 359 sva~v~L~pGg--m~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~---~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~G 433 (539)
..+-+-++|+| =+.|||- .-+.+++=+.|+=+..|-.+.... .+...- .. .+... -..+..|++|
T Consensus 114 ~~~n~Y~tp~g~~g~~~H~D-~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~-~~-----~~~~~---~~~~~~L~pG 183 (319)
T PF08007_consen 114 VGANAYLTPPGSQGFGPHYD-DHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPF-KQ-----LEEFE---PVEEVVLEPG 183 (319)
T ss_dssp EEEEEEEETSSBEESECEE--SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--T-TT-----CG--S---TSEEEEE-TT
T ss_pred cceEEEecCCCCCCccCEEC-CcccEEEECCceeEEEECCCCcccccccCCCCc-cc-----cccCc---eeEEEEECCC
Confidence 34556688888 8899997 456666667787777777632211 000000 00 00000 1346789999
Q ss_pred cEEEeCCCCeEEEEcCCCCcEEE
Q 039441 434 VVFIIPPGHPIALVASPNEKLLT 456 (539)
Q Consensus 434 DV~vVPaG~~h~i~n~gne~l~~ 456 (539)
||++||+|++|...+.+ ..+.+
T Consensus 184 D~LYlPrG~~H~~~~~~-~S~hl 205 (319)
T PF08007_consen 184 DVLYLPRGWWHQAVTTD-PSLHL 205 (319)
T ss_dssp -EEEE-TT-EEEEEESS--EEEE
T ss_pred CEEEECCCccCCCCCCC-CceEE
Confidence 99999999999999986 44444
No 111
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=94.56 E-value=0.53 Score=45.56 Aligned_cols=77 Identities=23% Similarity=0.252 Sum_probs=58.2
Q ss_pred ceeEEEEEEcCCceecceecCCC-CEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeE-EeeeCCC-
Q 039441 357 DAGVTYVEINQGGMMVPHYNSKA-TTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKI-SANLSPG- 433 (539)
Q Consensus 357 ~isva~v~L~pGgm~~PHwhpnA-~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~-~~~L~~G- 433 (539)
++|++. +|-++..|||..- .+++.|+.|++..-.|+-.-. ++.|.+. ...|.+-
T Consensus 48 n~S~S~----~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~-------------------SpTyg~~~~~~ls~~N 104 (173)
T COG1898 48 NHSFSY----PGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKD-------------------SPTYGKWVGVVLSAEN 104 (173)
T ss_pred eEEEec----CCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCC-------------------CCCcceEEEEEecCCC
Confidence 455554 9999999999888 999999999999999987532 2233332 3345544
Q ss_pred -cEEEeCCCCeEEEEcCCCCcEEEE
Q 039441 434 -VVFIIPPGHPIALVASPNEKLLTV 457 (539)
Q Consensus 434 -DV~vVPaG~~h~i~n~gne~l~~v 457 (539)
.++.||.|++|=+.|.++.. +++
T Consensus 105 ~~~l~IP~G~AHGf~~L~d~~-~~~ 128 (173)
T COG1898 105 KRQLYIPPGFAHGFQVLSDDA-EVV 128 (173)
T ss_pred ceEEEeCCcccceeEEccCce-EEE
Confidence 79999999999999997765 444
No 112
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=94.54 E-value=0.31 Score=44.18 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=45.8
Q ss_pred ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441 357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF 436 (539)
Q Consensus 357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~ 436 (539)
.+....-.-+||... |+-..+|..|+|+|.+.++ ..+| +. -.|++||+|
T Consensus 44 ~~~~GiWe~TpG~~r---~~y~~~E~chil~G~v~~T--~d~G------------------------e~--v~~~aGD~~ 92 (116)
T COG3450 44 QVETGIWECTPGKFR---VTYDEDEFCHILEGRVEVT--PDGG------------------------EP--VEVRAGDSF 92 (116)
T ss_pred CeeEeEEEecCccce---EEcccceEEEEEeeEEEEE--CCCC------------------------eE--EEEcCCCEE
Confidence 356667778888873 5556799999999988663 3333 23 369999999
Q ss_pred EeCCCCeEEEEcC
Q 039441 437 IIPPGHPIALVAS 449 (539)
Q Consensus 437 vVPaG~~h~i~n~ 449 (539)
|||+|+.-.+.-.
T Consensus 93 ~~~~G~~g~W~V~ 105 (116)
T COG3450 93 VFPAGFKGTWEVL 105 (116)
T ss_pred EECCCCeEEEEEe
Confidence 9999998776543
No 113
>COG4766 EutQ Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=94.49 E-value=0.17 Score=47.75 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=49.9
Q ss_pred ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441 357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF 436 (539)
Q Consensus 357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~ 436 (539)
.+++.+..+++-.+ -|..+-+++.||++|+..|.+-.- ++ .-.+|||+
T Consensus 99 ~l~aG~m~~~~~tf---~wtl~yDe~d~VlEGrL~V~~~g~---------------------------tv--~a~aGDvi 146 (176)
T COG4766 99 RLGAGLMEMKNTTF---PWTLNYDEIDYVLEGRLHVRIDGR---------------------------TV--IAGAGDVI 146 (176)
T ss_pred ccccceeeeccccC---cceecccceeEEEeeeEEEEEcCC---------------------------eE--ecCCCcEE
Confidence 47788888888332 488899999999999887644322 23 35899999
Q ss_pred EeCCCCeEEEEcCCCCcEEEEE
Q 039441 437 IIPPGHPIALVASPNEKLLTVG 458 (539)
Q Consensus 437 vVPaG~~h~i~n~gne~l~~v~ 458 (539)
+||.|.-+-+--.+. ..|+-
T Consensus 147 fiPKgssIefst~ge--a~fly 166 (176)
T COG4766 147 FIPKGSSIEFSTTGE--AKFLY 166 (176)
T ss_pred EecCCCeEEEeccce--EEEEE
Confidence 999999988766543 44443
No 114
>COG3435 Gentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.43 E-value=0.075 Score=55.17 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=61.8
Q ss_pred EEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeC
Q 039441 360 VTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIP 439 (539)
Q Consensus 360 va~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVP 439 (539)
++.--|-||-+...|=| +-..+-||++|+|-.++|+-. + ..+++||+++.|
T Consensus 94 AglQlilPGEvApsHrH-sqsAlRFvveG~Ga~T~VdGe--------------------------r--~~M~~GDfilTP 144 (351)
T COG3435 94 AGLQLILPGEVAPSHRH-NQSALRFVVEGKGAYTVVDGE--------------------------R--TPMEAGDFILTP 144 (351)
T ss_pred hhhheecCcccCCcccc-cccceEEEEeccceeEeecCc--------------------------e--eeccCCCEEEcc
Confidence 56667889999999999 778999999999999999874 2 358999999999
Q ss_pred CCCeEEEEcCCCCcEEEEE
Q 039441 440 PGHPIALVASPNEKLLTVG 458 (539)
Q Consensus 440 aG~~h~i~n~gne~l~~v~ 458 (539)
++..|.--|.|++++.|+-
T Consensus 145 ~w~wHdHgn~g~eP~iWlD 163 (351)
T COG3435 145 AWTWHDHGNEGTEPCIWLD 163 (351)
T ss_pred CceeccCCCCCCCceEEEc
Confidence 9999999999999999983
No 115
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=94.39 E-value=5.5 Score=41.36 Aligned_cols=186 Identities=13% Similarity=0.125 Sum_probs=99.2
Q ss_pred eeecccccCCCcEEE-EEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC-CceEEEEEEeccCCCCCCcee
Q 039441 212 TLVVPHHSDAETILV-LLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN-VDRLHVAKLLQPVNTPGQFRV 289 (539)
Q Consensus 212 ~l~lPh~~dA~~~~y-V~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~-~e~L~iv~l~d~~n~pg~f~~ 289 (539)
.|-.+.+...-|+++ ++.|+|+|++ .| +++.+...|.++||.|+..++....+ ..+++|+..--|... .|
T Consensus 64 ~~~~~~fl~rrE~giV~lgG~~~V~v--dG--~~~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i~sAPA~~--~~-- 135 (276)
T PRK00924 64 QLGVSYFLERRELGIINIGGAGTVTV--DG--ETYELGHRDALYVGKGAKEVVFASADAANPAKFYLNSAPAHT--TY-- 135 (276)
T ss_pred cccceeecCCcEEEEEEccceEEEEE--CC--EEEecCCCcEEEECCCCcEEEEEecCCCCCcEEEEEccccCC--CC--
Confidence 344555666676655 5677787775 33 67889999999999999877774322 345655554333211 00
Q ss_pred ccccCccEEEcChhhhhhcCccccccCCCCCCCCcceecCCCCCcccCCCceEEEe-CCcccccccccceeEEEEEEcCC
Q 039441 290 QQRQQGTIKRASQEQLKALSHHASSRRRHGRGSTAPFNLLSRKPIYNNNFGRFFEA-TPKDYQQLQEIDAGVTYVEINQG 368 (539)
Q Consensus 290 ~~q~~G~Ivrv~~eql~~l~~~~~~~~~~~~~~~~~fnl~~~~p~~sn~~G~i~~~-~~~~fP~L~~l~isva~v~L~pG 368 (539)
-...++.++..... .+. ...+| --.|+.+ .+...|. -.+-|....|+||
T Consensus 136 ------PtrlI~~~d~~~~~-------rG~-------------~~~sN-~R~I~~il~p~~~~s---~qLlmG~tvltPG 185 (276)
T PRK00924 136 ------PTKKITIADASPVT-------LGD-------------LETSN-RRTINKYIHPDVLET---CQLVMGLTELEPG 185 (276)
T ss_pred ------CCEEECHHHCCeEe-------ccC-------------CCCCC-cEEEEEecCCCCCcc---ccEEEEEEEEcCC
Confidence 01111111111100 000 00011 1112222 2333333 3577888889999
Q ss_pred c---eecceecCCCCEEEEEEeceEEEEEecC-CCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeE
Q 039441 369 G---MMVPHYNSKATTIVLVVEGRGRFEMGGP-LSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPI 444 (539)
Q Consensus 369 g---m~~PHwhpnA~ei~yV~~G~g~v~vV~p-~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h 444 (539)
| -++||-|.+-.|+.|...=.-- +.|.. .|.- . ..--.-|+-+|++++|.=..|
T Consensus 186 g~WSSyPPHkHDrr~E~YlYf~l~~~-qrV~h~mG~p--------d-------------ETrh~~v~n~~aVisP~wsih 243 (276)
T PRK00924 186 SVWNTMPCHTHDRRMEVYFYFDMPED-ARVFHFMGEP--------Q-------------ETRHIVVHNEQAVISPSWSIH 243 (276)
T ss_pred CCCCCCCCccCCCCcceEEEEEcCCC-ceEEecCCCc--------c-------------ceeeEEEECCCEEECCCccee
Confidence 9 4699999866676554331111 11221 1110 0 111135899999999998888
Q ss_pred EEEcCCCCcEEEE
Q 039441 445 ALVASPNEKLLTV 457 (539)
Q Consensus 445 ~i~n~gne~l~~v 457 (539)
.-..++|=.+.|-
T Consensus 244 ~g~gt~~y~fiw~ 256 (276)
T PRK00924 244 SGVGTSNYTFIWG 256 (276)
T ss_pred cCcCccccEEEEE
Confidence 8666655444443
No 116
>KOG2107 consensus Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=93.79 E-value=0.1 Score=49.86 Aligned_cols=75 Identities=19% Similarity=0.369 Sum_probs=56.0
Q ss_pred EEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhc
Q 039441 342 FFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSR 421 (539)
Q Consensus 342 i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~ 421 (539)
+.++++...|-+.. +--.++++|-| .-.+|-|++.|.|+.-|=+-+.
T Consensus 67 ~~~~~~e~~~nfde----------Kvk~FfEEhlh-~deeiR~il~GtgYfDVrd~dd---------------------- 113 (179)
T KOG2107|consen 67 ICTVCPETLPNFDE----------KVKSFFEEHLH-EDEEIRYILEGTGYFDVRDKDD---------------------- 113 (179)
T ss_pred EEEEchhhcccHHH----------HHHHHHHHhcC-chhheEEEeecceEEeeccCCC----------------------
Confidence 35566555555442 11257899999 5679999999999998887764
Q ss_pred ceeeEEeeeCCCcEEEeCCCCeEEEEcCCC
Q 039441 422 ELQKISANLSPGVVFIIPPGHPIALVASPN 451 (539)
Q Consensus 422 ~y~~~~~~L~~GDV~vVPaG~~h~i~n~gn 451 (539)
+-+.--|..||++++|+|--|-..-+.+
T Consensus 114 --~WIRi~vekGDlivlPaGiyHRFTtt~~ 141 (179)
T KOG2107|consen 114 --QWIRIFVEKGDLIVLPAGIYHRFTTTPS 141 (179)
T ss_pred --CEEEEEEecCCEEEecCcceeeeecCch
Confidence 3566679999999999999988765533
No 117
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=93.08 E-value=0.62 Score=44.24 Aligned_cols=74 Identities=14% Similarity=0.101 Sum_probs=48.1
Q ss_pred ceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeC-C-C-----ceeeecCCCcEEEeCCCCeEEEEecCCCce
Q 039441 199 DNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSH-E-R-----RESFNMEHGDVISVPAGTTYYLSNQDNVDR 271 (539)
Q Consensus 199 ~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~p-g-~-----~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~ 271 (539)
...++.|..|.|++.+.||.-..+.. =+.-|+++.| + | .+++..++|.+|+|-....|+..|.++.
T Consensus 78 ~~~~~~~s~l~pg~~I~pH~d~~~~~-----lR~Hl~L~~p~~~~~~~v~~~~~~w~~G~~~~fD~s~~H~~~N~~~~-- 150 (163)
T PF05118_consen 78 PLGRVRFSRLPPGTHIKPHRDPTNLR-----LRLHLPLIVPNPGCYIRVGGETRHWREGECWVFDDSFEHEVWNNGDE-- 150 (163)
T ss_dssp TCEEEEEEEEECTEEEEEE-SS-TTE-----EEEEEEEC--STTEEEEETTEEEB--CTEEEEE-TTS-EEEEESSSS--
T ss_pred chhhEEEEEECCCCEECCeeCCCCcc-----eEEEEEEEcCCCCeEEEECCeEEEeccCcEEEEeCCEEEEEEeCCCC--
Confidence 34567788899999999996544433 2456677765 3 2 2578899999999999999999999854
Q ss_pred EEEEEEec
Q 039441 272 LHVAKLLQ 279 (539)
Q Consensus 272 L~iv~l~d 279 (539)
-+|++++|
T Consensus 151 ~Rv~L~vD 158 (163)
T PF05118_consen 151 DRVVLIVD 158 (163)
T ss_dssp -EEEEEEE
T ss_pred CEEEEEEE
Confidence 44555565
No 118
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=93.00 E-value=0.29 Score=49.77 Aligned_cols=49 Identities=20% Similarity=0.357 Sum_probs=39.0
Q ss_pred ccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441 216 PHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN 268 (539)
Q Consensus 216 Ph~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~ 268 (539)
|+-++.-.+.||++|.+.+-+ . ...+.+++||++.||+|++|.+....+
T Consensus 44 ~~~~~~~~i~~~~~G~~~~~~--~--~~~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 44 PLGMKGYILNLTIRGQGVIFN--G--GRAFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred CCCccceEEEEEEeccEEEec--C--CeeEecCCCCEEEECCCCceeeccCCC
Confidence 555566678999999998742 2 237999999999999999998877654
No 119
>PF06052 3-HAO: 3-hydroxyanthranilic acid dioxygenase; InterPro: IPR010329 Members of this protein family, from both bacteria and eukaryotes, are the enzyme 3-hydroxyanthranilate 3,4-dioxygenase (1.13.11.6 from EC). It is part of the kynurenine pathway for the degradation of tryptophan and the biosynthesis of nicotinic acid [].The prokaryotic homologue is involved in the 2-nitrobenzoate degradation pathway []. The enzyme acts on the tryptophan metabolite 3-hydroxyanthranilate and produces 2-amino-3-carboxymuconate semialdehyde, which can rearrange spontaneously to quinolinic acid and feed into nicotinamide biosynthesis, or undergo further enzymatic degradation.; GO: 0000334 3-hydroxyanthranilate 3,4-dioxygenase activity, 0005506 iron ion binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 1ZVF_A 1YFX_A 1YFW_A 1YFY_A 1YFU_A 2QNK_A 3FE5_A.
Probab=92.94 E-value=0.56 Score=44.30 Aligned_cols=69 Identities=13% Similarity=0.097 Sum_probs=43.4
Q ss_pred EEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCC
Q 039441 363 VEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGH 442 (539)
Q Consensus 363 v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~ 442 (539)
+.=-|+.-.-=|++ -+.||.|-++|...+-|+..+. .-+-.+++||+|.+|++.
T Consensus 38 vVGGPN~R~DyHin-e~eE~FyQ~kG~m~Lkv~e~g~-------------------------~kdi~I~EGe~fLLP~~v 91 (151)
T PF06052_consen 38 VVGGPNQRTDYHIN-ETEEFFYQLKGDMCLKVVEDGK-------------------------FKDIPIREGEMFLLPANV 91 (151)
T ss_dssp EEESSB--SSEEE--SS-EEEEEEES-EEEEEEETTE-------------------------EEEEEE-TTEEEEE-TT-
T ss_pred EEcCCCCCCccccC-CcceEEEEEeCcEEEEEEeCCc-------------------------eEEEEeCCCcEEecCCCC
Confidence 34456666666776 5789999999999999999752 335689999999999999
Q ss_pred eEEEEcCCCCcEEEEE
Q 039441 443 PIALVASPNEKLLTVG 458 (539)
Q Consensus 443 ~h~i~n~gne~l~~v~ 458 (539)
||.=.-..+ .+-+|.
T Consensus 92 pHsP~R~~~-tiGLVi 106 (151)
T PF06052_consen 92 PHSPQRPAD-TIGLVI 106 (151)
T ss_dssp -EEEEE-TT--EEEEE
T ss_pred CCCCcCCCC-cEEEEE
Confidence 999766532 344443
No 120
>PF04209 HgmA: homogentisate 1,2-dioxygenase; InterPro: IPR005708 Alkaptonuria (AKU), a rare hereditary disorder, was the first disease to be interpreted as an inborn error of metabolism. The deficiency causes homogentisic aciduria, ochronosis, and arthritis. AKU patients are deficient for homogentisate 1,2 dioxygenase (1.13.11.5 from EC), the enzyme that mediates the conversion of homogentisate to maleylacetoacetate; a step in the catabolism of both tyrosine and phenylalanine. Homogentisate + O(2) = 4-maleylacetoacetate. ; GO: 0004411 homogentisate 1,2-dioxygenase activity, 0006559 L-phenylalanine catabolic process, 0006570 tyrosine metabolic process, 0055114 oxidation-reduction process; PDB: 1EY2_A 1EYB_A.
Probab=91.91 E-value=1 Score=49.29 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=49.3
Q ss_pred EeCCcccccccccceeEEEEEEcCCce-ecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcc
Q 039441 344 EATPKDYQQLQEIDAGVTYVEINQGGM-MVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRE 422 (539)
Q Consensus 344 ~~~~~~fP~L~~l~isva~v~L~pGgm-~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~ 422 (539)
++....-+.++. ||++.....+ .+| -.-.+|.++++++||.+|++++.-..-
T Consensus 112 ti~g~gd~~~~~-g~ai~~y~~~-~sM~~~~f~NaDGD~Li~~q~G~l~l~Te~G------------------------- 164 (424)
T PF04209_consen 112 TIAGAGDPLSNN-GVAIHVYAAN-ASMDDRAFRNADGDELIFPQQGSLRLETEFG------------------------- 164 (424)
T ss_dssp EEEEECECCCTE-EEEEEEEEE--S---SEEEEESSEEEEEEEEES-EEEEETTE-------------------------
T ss_pred ccccCccccccC-CcEEEEEEcC-CCCCCcceEcCCCCEEEEEEECCEEEEecCe-------------------------
Confidence 333344444432 4555444443 345 455678889999999999998865443
Q ss_pred eeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEe
Q 039441 423 LQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFS 460 (539)
Q Consensus 423 y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~ 460 (539)
.+ .|++||++|||+|..+.+.-. .++..+.+.
T Consensus 165 --~L--~v~pGd~~VIPRG~~~rv~l~--~p~rgyi~E 196 (424)
T PF04209_consen 165 --RL--DVRPGDYVVIPRGTRFRVELP--GPARGYIIE 196 (424)
T ss_dssp --EE--EE-TTEEEEE-TT--EEEE-S--SSEEEEEEE
T ss_pred --eE--EEcCCeEEEECCeeEEEEEeC--CCceEEEEE
Confidence 33 599999999999999887666 445555444
No 121
>PF00908 dTDP_sugar_isom: dTDP-4-dehydrorhamnose 3,5-epimerase; InterPro: IPR000888 Deoxythymidine diphosphate (dTDP)-4-keto-6-deoxy-d-hexulose 3, 5-epimerase (RmlC, 5.1.3.13 from EC) is involved in the biosynthesis of dTDP-l-rhamnose, which is an essential component of the bacterial cell wall, converting dTDP-4-keto-6-deoxy-D-glucose to dTDP-4-keto-L-rhamnose. The crystal structure of RmlC from Methanobacterium thermoautotrophicum was determined in the presence and absence of a substrate analogue. RmlC is a homodimer comprising a central jelly roll motif, which extends in two directions into longer beta-sheets. Binding of dTDP is stabilised by ionic interactions to the phosphate group and by a combination of ionic and hydrophobic interactions with the base. The active site, which is located in the centre of the jelly roll, is formed by residues that are conserved in all known RmlC sequence homologues. The active site is lined with a number of charged residues and a number of residues with hydrogen-bonding potentials, which together comprise a potential network for substrate binding and catalysis. The active site is also lined with aromatic residues which provide favorable environments for the base moiety of dTDP and potentially for the sugar moiety of the substrate [].; GO: 0008830 dTDP-4-dehydrorhamnose 3,5-epimerase activity, 0009103 lipopolysaccharide biosynthetic process; PDB: 1EPZ_A 1EP0_A 1NXM_A 1NZC_D 2IXL_C 1NYW_B 2IXC_D 1PM7_B 1UPI_A 3RYK_B ....
Probab=91.83 E-value=1 Score=43.54 Aligned_cols=61 Identities=13% Similarity=0.186 Sum_probs=48.8
Q ss_pred eCCCeeecccccCCC----cEEEEEeceEEEEEEe--CCCc-----eeeecCCCc--EEEeCCCCeEEEEecCC
Q 039441 208 ANPSTLVVPHHSDAE----TILVLLKGKGVITLVS--HERR-----ESFNMEHGD--VISVPAGTTYYLSNQDN 268 (539)
Q Consensus 208 l~P~~l~lPh~~dA~----~~~yV~~G~g~i~~v~--pg~~-----~~~~v~~GD--V~~iPaG~~h~i~N~g~ 268 (539)
..++.++=+||..-+ ++++|+.|+....+|+ ++.+ .++.|.+++ .++||+|++|=.++..+
T Consensus 50 s~~gvlRGlH~q~~~~~q~Klv~~~~G~i~dV~vDlR~~SpTfg~~~~~~Ls~~n~~~l~IP~G~aHGf~~l~d 123 (176)
T PF00908_consen 50 SKKGVLRGLHYQSPPYAQAKLVRCLRGEIFDVAVDLRKGSPTFGKWVSVELSAENPRQLYIPPGVAHGFQTLED 123 (176)
T ss_dssp EETTBEEEEEEESTTT-EEEEEEEEESEEEEEEEE-BTTSTTTT-EEEEEEETTT--EEEE-TTEEEEEEESSS
T ss_pred ccccEEEEEEEecCCCCCCcEEEEecCeEEEEEEECCCCCCCCCEEEEEEeCccccCEEEeCCcceeeEEeccC
Confidence 356999999976665 9999999999999998 3332 467776665 89999999999999974
No 122
>COG3257 GlxB Uncharacterized protein, possibly involved in glyoxylate utilization [General function prediction only]
Probab=91.64 E-value=1.1 Score=44.90 Aligned_cols=74 Identities=23% Similarity=0.245 Sum_probs=57.9
Q ss_pred eeEEEEEEcCCc-eecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441 358 AGVTYVEINQGG-MMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF 436 (539)
Q Consensus 358 isva~v~L~pGg-m~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~ 436 (539)
.+=..+++.||| --.|--.+.|..++||++|+..+.+-.. +..|++|+-.
T Consensus 61 F~qyive~~p~GGs~~~e~d~~ae~~lfVv~Ge~tv~~~G~-----------------------------th~l~eggya 111 (264)
T COG3257 61 FVQYIVELHPNGGSQRPEGDEGAETFLFVVSGEITVKAEGK-----------------------------THALREGGYA 111 (264)
T ss_pred hhhheEEECCCCCCCCCCCCCcceEEEEEEeeeEEEEEcCe-----------------------------EEEeccCCeE
Confidence 344567887777 7778877889999999999987765332 2579999999
Q ss_pred EeCCCCeEEEEcCCCCcEEEEEEe
Q 039441 437 IIPPGHPIALVASPNEKLLTVGFS 460 (539)
Q Consensus 437 vVPaG~~h~i~n~gne~l~~v~F~ 460 (539)
++|+|..+.+.|....+..|-.|.
T Consensus 112 ylPpgs~~~~~N~~~~~~rfhw~r 135 (264)
T COG3257 112 YLPPGSGWTLRNAQKEDSRFHWIR 135 (264)
T ss_pred EeCCCCcceEeeccCCceEEEEEe
Confidence 999999999999876666655443
No 123
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=91.62 E-value=0.7 Score=49.32 Aligned_cols=67 Identities=28% Similarity=0.465 Sum_probs=49.6
Q ss_pred eeEEEEEEcCCce-ecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441 358 AGVTYVEINQGGM-MVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF 436 (539)
Q Consensus 358 isva~v~L~pGgm-~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~ 436 (539)
..|-.+++..|.- ..|. .+...|..|++|+|++.--... . ..|++|||+
T Consensus 333 F~v~~~~v~~g~~~~~~~--~~~~SIllv~~G~g~l~~~t~~--------------------------~--~~v~rG~V~ 382 (411)
T KOG2757|consen 333 FAVLETKVPTGESYKFPG--VDGPSILLVLKGSGILKTDTDS--------------------------K--ILVNRGDVL 382 (411)
T ss_pred eeEEEeecCCCceEEeec--CCCceEEEEEecceEEecCCCC--------------------------c--eeeccCcEE
Confidence 6677777777766 3444 3789999999999998654311 1 358999999
Q ss_pred EeCCCCeEEEEcCCCCcEE
Q 039441 437 IIPPGHPIALVASPNEKLL 455 (539)
Q Consensus 437 vVPaG~~h~i~n~gne~l~ 455 (539)
+||+.++..+.++ ++.+.
T Consensus 383 fI~a~~~i~~~~~-sd~~~ 400 (411)
T KOG2757|consen 383 FIPANHPIHLSSS-SDPFL 400 (411)
T ss_pred EEcCCCCceeecc-Cccee
Confidence 9999999977666 44443
No 124
>PRK15131 mannose-6-phosphate isomerase; Provisional
Probab=90.97 E-value=1 Score=48.78 Aligned_cols=61 Identities=11% Similarity=0.309 Sum_probs=46.0
Q ss_pred cceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEE
Q 039441 198 IDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLS 264 (539)
Q Consensus 198 v~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~ 264 (539)
+..+.+..+.+.++...++. +...|++|++|+++|.. ...++.|++|++++|||+...+..
T Consensus 318 ~~~F~~~~~~l~~~~~~~~~--~~~~Illv~~G~~~i~~----~~~~~~l~~G~~~fipa~~~~~~~ 378 (389)
T PRK15131 318 VDDFAFSLHDLSDQPTTLSQ--QSAAILFCVEGEAVLWK----GEQQLTLKPGESAFIAANESPVTV 378 (389)
T ss_pred CCCcEEEEEEECCceEEecC--CCcEEEEEEcceEEEEe----CCeEEEECCCCEEEEeCCCccEEE
Confidence 44556666666666555554 67899999999999853 234578999999999999887666
No 125
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=90.77 E-value=1.2 Score=46.82 Aligned_cols=64 Identities=27% Similarity=0.381 Sum_probs=35.8
Q ss_pred CCCe--eecccccCCCcEEEEEeceEEEEEEeCCC------c-------------eeeecCCCcEEEeCCCCeEEEEecC
Q 039441 209 NPST--LVVPHHSDAETILVLLKGKGVITLVSHER------R-------------ESFNMEHGDVISVPAGTTYYLSNQD 267 (539)
Q Consensus 209 ~P~~--l~lPh~~dA~~~~yV~~G~g~i~~v~pg~------~-------------~~~~v~~GDV~~iPaG~~h~i~N~g 267 (539)
-|.+ -+-|||=+.+-+++=+.|+=.-.+-.+.. . ..+.|++|||+|||+|++|+-...+
T Consensus 121 tp~g~~g~~~H~D~~dvfvlQ~~G~K~W~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~ 200 (319)
T PF08007_consen 121 TPPGSQGFGPHYDDHDVFVLQLEGRKRWRLYPPPDEPAPLYSDQPFKQLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTD 200 (319)
T ss_dssp ETSSBEESECEE-SSEEEEEEEES-EEEEEE-SCCCTTTSSCE--TTTCG--STSEEEEE-TT-EEEE-TT-EEEEEESS
T ss_pred cCCCCCCccCEECCcccEEEECCceeEEEECCCCcccccccCCCCccccccCceeEEEEECCCCEEEECCCccCCCCCCC
Confidence 4544 55666666555555556653333333210 0 1478999999999999999999997
Q ss_pred CCceEEE
Q 039441 268 NVDRLHV 274 (539)
Q Consensus 268 ~~e~L~i 274 (539)
..+.+
T Consensus 201 --~S~hl 205 (319)
T PF08007_consen 201 --PSLHL 205 (319)
T ss_dssp ---EEEE
T ss_pred --CceEE
Confidence 45655
No 126
>PF12852 Cupin_6: Cupin
Probab=90.57 E-value=0.9 Score=43.36 Aligned_cols=46 Identities=20% Similarity=0.421 Sum_probs=35.6
Q ss_pred CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCC
Q 039441 379 ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPN 451 (539)
Q Consensus 379 A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gn 451 (539)
...+.+|++|.+++.+-... .. ..|++||++++|.|.+|++....+
T Consensus 35 ~~~fh~V~~G~~~l~~~~~~-------------------------~~--~~L~~GDivllp~g~~H~l~~~~~ 80 (186)
T PF12852_consen 35 GASFHVVLRGSCWLRVPGGG-------------------------EP--IRLEAGDIVLLPRGTAHVLSSDPD 80 (186)
T ss_pred ceEEEEEECCeEEEEEcCCC-------------------------Ce--EEecCCCEEEEcCCCCeEeCCCCC
Confidence 46788999999999854421 12 469999999999999999965533
No 127
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=90.04 E-value=0.29 Score=42.46 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=19.4
Q ss_pred eeecCCCcEEEeCCCCeEEEEecCC
Q 039441 244 SFNMEHGDVISVPAGTTYYLSNQDN 268 (539)
Q Consensus 244 ~~~v~~GDV~~iPaG~~h~i~N~g~ 268 (539)
....++||+|++|+|+.|+.+|.|.
T Consensus 82 ~~~Q~~Ge~V~i~pg~~H~v~n~g~ 106 (114)
T PF02373_consen 82 RFVQKPGEFVFIPPGAYHQVFNLGD 106 (114)
T ss_dssp EEEEETT-EEEE-TT-EEEEEESSS
T ss_pred cceECCCCEEEECCCceEEEEeCCc
Confidence 3567899999999999999999984
No 128
>COG1898 RfbC dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes [Cell envelope biogenesis, outer membrane]
Probab=89.97 E-value=1.8 Score=42.00 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=50.7
Q ss_pred CCCeeecccccCCC--cEEEEEeceEEEEEEeCCCce-------eeecC--CCcEEEeCCCCeEEEEecCCCceEEEEEE
Q 039441 209 NPSTLVVPHHSDAE--TILVLLKGKGVITLVSHERRE-------SFNME--HGDVISVPAGTTYYLSNQDNVDRLHVAKL 277 (539)
Q Consensus 209 ~P~~l~lPh~~dA~--~~~yV~~G~g~i~~v~pg~~~-------~~~v~--~GDV~~iPaG~~h~i~N~g~~e~L~iv~l 277 (539)
.||.++=.||+..+ +++.|++|++.+.+|+-..-+ ...+. -.-++.||.|.+|-++|.+++. .++..
T Consensus 53 ~~GvlRGlHyq~~~q~klv~~v~G~v~dv~vDlR~~SpTyg~~~~~~ls~~N~~~l~IP~G~AHGf~~L~d~~--~~~y~ 130 (173)
T COG1898 53 YPGVLRGLHYQHKPQGKLVRVVSGKVFDVAVDLRKDSPTYGKWVGVVLSAENKRQLYIPPGFAHGFQVLSDDA--EVVYK 130 (173)
T ss_pred cCCeeEEEEcccCCCCeEEEEecCeEEEEEEEccCCCCCcceEEEEEecCCCceEEEeCCcccceeEEccCce--EEEEE
Confidence 48888888876555 899999999999999854322 23343 3478999999999999998543 44444
Q ss_pred ec
Q 039441 278 LQ 279 (539)
Q Consensus 278 ~d 279 (539)
.+
T Consensus 131 ~~ 132 (173)
T COG1898 131 VT 132 (173)
T ss_pred ec
Confidence 43
No 129
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=89.79 E-value=0.69 Score=40.55 Aligned_cols=87 Identities=18% Similarity=0.334 Sum_probs=50.0
Q ss_pred eeeCCCee-ecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEE-eccCCC
Q 039441 206 LEANPSTL-VVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKL-LQPVNT 283 (539)
Q Consensus 206 l~l~P~~l-~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l-~d~~n~ 283 (539)
++|+|++- .+|.=.+-..++||++|.+.|+ .. ...|.+|+++.+..|....+.+.+ +..+|+++ ..|.+.
T Consensus 4 i~l~~g~~~~~~~~~~~~~~iyv~~G~~~v~---~~---~~~~~~~~~~~l~~g~~i~~~a~~--~~a~~lll~GePl~E 75 (104)
T PF05726_consen 4 IKLEPGASFTLPLPPGHNAFIYVLEGSVEVG---GE---EDPLEAGQLVVLEDGDEIELTAGE--EGARFLLLGGEPLNE 75 (104)
T ss_dssp EEE-TT-EEEEEEETT-EEEEEEEESEEEET---TT---TEEEETTEEEEE-SECEEEEEESS--SSEEEEEEEE----S
T ss_pred EEECCCCEEEeecCCCCEEEEEEEECcEEEC---CC---cceECCCcEEEECCCceEEEEECC--CCcEEEEEEccCCCC
Confidence 34588774 4454455678999999997653 11 167999999999999999999985 33444443 344443
Q ss_pred CCCceeccccCccEEEcChhhhh
Q 039441 284 PGQFRVQQRQQGTIKRASQEQLK 306 (539)
Q Consensus 284 pg~f~~~~q~~G~Ivrv~~eql~ 306 (539)
|- -..|.+|--+++.|.
T Consensus 76 pi------~~~GpFVmnt~eeI~ 92 (104)
T PF05726_consen 76 PI------VQYGPFVMNTREEIE 92 (104)
T ss_dssp --------EEETTEEESSHHHHH
T ss_pred CE------EEECCcccCCHHHHH
Confidence 31 123455555555443
No 130
>TIGR01221 rmlC dTDP-4-dehydrorhamnose 3,5-epimerase. This enzyme participates in the biosynthesis of dTDP-L-rhamnose, often as a precursor to LPS O-antigen
Probab=89.68 E-value=2.4 Score=41.12 Aligned_cols=70 Identities=10% Similarity=0.016 Sum_probs=53.4
Q ss_pred CCCeeeccccc---CCCcEEEEEeceEEEEEEeCC--Cc-----eeeecCC--CcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441 209 NPSTLVVPHHS---DAETILVLLKGKGVITLVSHE--RR-----ESFNMEH--GDVISVPAGTTYYLSNQDNVDRLHVAK 276 (539)
Q Consensus 209 ~P~~l~lPh~~---dA~~~~yV~~G~g~i~~v~pg--~~-----~~~~v~~--GDV~~iPaG~~h~i~N~g~~e~L~iv~ 276 (539)
.+++++=.|+. ...++++|+.|+....+|+.- .+ ..+.|.. +-.++||+|++|=.++.+++ ..++.
T Consensus 52 ~~gvlRGlH~q~~~~q~Klv~c~~G~i~dV~VDlR~~SpTfG~~~~~~L~~~~~~~l~IP~G~aHGF~~L~d~--a~v~Y 129 (176)
T TIGR01221 52 YKGVLRGLHYQRPHPQGKLVRVLRGEVFDVAVDLRRNSPTFGKWVGVLLSAENKRQLWIPEGFAHGFVVLSDE--AEFLY 129 (176)
T ss_pred cCCEEEEEEECCCCCCceEEEEccCCEEEEEEECCCCcCCCCeEEEEEECCCCCCEEEeCCcceeEEEEcCCC--eEEEE
Confidence 67999989975 368999999999999999854 22 2456655 66999999999999999743 44444
Q ss_pred Eecc
Q 039441 277 LLQP 280 (539)
Q Consensus 277 l~d~ 280 (539)
+.+.
T Consensus 130 ~~~~ 133 (176)
T TIGR01221 130 KCTD 133 (176)
T ss_pred eCCC
Confidence 4443
No 131
>PRK05341 homogentisate 1,2-dioxygenase; Provisional
Probab=89.30 E-value=2.2 Score=46.80 Aligned_cols=62 Identities=19% Similarity=0.316 Sum_probs=47.6
Q ss_pred ceeEEEEEEcCCce-ecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441 357 DAGVTYVEINQGGM-MVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV 435 (539)
Q Consensus 357 ~isva~v~L~pGgm-~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV 435 (539)
|+++.....+. +| -.-.+|.++++++|+.+|.+.+.--.- + -.|++||+
T Consensus 132 G~ai~~y~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEfG---------------------------~--L~v~pgei 181 (438)
T PRK05341 132 GMAIHLYAANR-SMQDRYFYNADGELLIVPQQGRLRLATELG---------------------------V--LDVEPGEI 181 (438)
T ss_pred ccEEEEEeCCC-CcccceeecCCCCEEEEEEeCCEEEEEecc---------------------------c--eEecCCCE
Confidence 45555555554 66 566788899999999999998865443 2 25899999
Q ss_pred EEeCCCCeEEEEc
Q 039441 436 FIIPPGHPIALVA 448 (539)
Q Consensus 436 ~vVPaG~~h~i~n 448 (539)
+|||+|..+.+.-
T Consensus 182 ~VIPRG~~frv~l 194 (438)
T PRK05341 182 AVIPRGVKFRVEL 194 (438)
T ss_pred EEEcCccEEEEec
Confidence 9999999988764
No 132
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=89.23 E-value=2.2 Score=36.87 Aligned_cols=91 Identities=16% Similarity=0.199 Sum_probs=42.1
Q ss_pred EEEcCCceecceecCCCC-EEEEEE---eceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEe
Q 039441 363 VEINQGGMMVPHYNSKAT-TIVLVV---EGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFII 438 (539)
Q Consensus 363 v~L~pGgm~~PHwhpnA~-ei~yV~---~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vV 438 (539)
....+|+...+|.|++|. .-+|.+ .+.+.+.+..+............ ..........+....++||++++
T Consensus 5 ni~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~p~~G~lvlF 78 (101)
T PF13759_consen 5 NIYRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDN------YDQNDLNSPYYIVEPEEGDLVLF 78 (101)
T ss_dssp EEE-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----------TTTTCCC-SEEEE---TTEEEEE
T ss_pred EEeCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccc------cccCcccCceEEeCCCCCEEEEe
Confidence 456799999999999974 334444 34566677776543200000000 00001112345568899999999
Q ss_pred CCCCeEEEEcC-CCCcEEEEEE
Q 039441 439 PPGHPIALVAS-PNEKLLTVGF 459 (539)
Q Consensus 439 PaG~~h~i~n~-gne~l~~v~F 459 (539)
|.-..|..... ++.+-..|+|
T Consensus 79 Ps~l~H~v~p~~~~~~Risisf 100 (101)
T PF13759_consen 79 PSWLWHGVPPNNSDEERISISF 100 (101)
T ss_dssp ETTSEEEE----SSS-EEEEEE
T ss_pred CCCCEEeccCcCCCCCEEEEEc
Confidence 99999998664 3445555665
No 133
>PLN02288 mannose-6-phosphate isomerase
Probab=89.22 E-value=0.87 Score=49.48 Aligned_cols=64 Identities=23% Similarity=0.440 Sum_probs=45.8
Q ss_pred CcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEE
Q 039441 197 GIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYY 262 (539)
Q Consensus 197 gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~ 262 (539)
-+..+.|..+++.++.-....-.+.+.|++|++|+++|.. .+...+..|++|++++|||++...
T Consensus 330 P~~eF~v~~~~l~~~~~~~~~~~~gp~Illv~~G~~~i~~--~~~~~~~~l~~G~~~fv~a~~~~~ 393 (394)
T PLN02288 330 PFDEFEVDHCDVPPGASVVFPAVPGPSVFLVIEGEGVLST--GSSEDGTAAKRGDVFFVPAGTEIH 393 (394)
T ss_pred CCcceEEEEEEeCCCCeEeecCCCCCEEEEEEcCEEEEec--CCccceEEEeceeEEEEeCCCccc
Confidence 3566778878888775322222678899999999998853 222234779999999999987643
No 134
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=88.46 E-value=5.1 Score=38.53 Aligned_cols=76 Identities=13% Similarity=0.040 Sum_probs=52.7
Q ss_pred ceeeEEEeeeCCCeeeccc-ccCCCcEEEEEeceEEEEEEeCCCc---------eeeecCCCcEEEeCCCCeEEEEecCC
Q 039441 199 DNYRLAILEANPSTLVVPH-HSDAETILVLLKGKGVITLVSHERR---------ESFNMEHGDVISVPAGTTYYLSNQDN 268 (539)
Q Consensus 199 ~~~Rl~il~l~P~~l~lPh-~~dA~~~~yV~~G~g~i~~v~pg~~---------~~~~v~~GDV~~iPaG~~h~i~N~g~ 268 (539)
..+-|.+|.-.||-.--+| |.++-.|+.|++|.-.-+.-..... ....+..|.++.++.+-+|-+.|.+.
T Consensus 73 ~~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~iH~v~n~s~ 152 (175)
T PF05995_consen 73 ERFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGGAPLELVGRERLLPGGVTYIFDPHGIHRVENPSG 152 (175)
T ss_dssp CT-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-EEEECEEEEEETTTEEEEBTTTBEEEEEES-S
T ss_pred CCeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCcccCcccccCceEecCCCeEEecCCCCeEEeccCCC
Confidence 3456778888999999999 7789999999999988876653322 23457888889999999999999874
Q ss_pred CceEEE
Q 039441 269 VDRLHV 274 (539)
Q Consensus 269 ~e~L~i 274 (539)
++..+=
T Consensus 153 ~~~avS 158 (175)
T PF05995_consen 153 DEPAVS 158 (175)
T ss_dssp SS-EEE
T ss_pred CCCEEE
Confidence 555543
No 135
>KOG2757 consensus Mannose-6-phosphate isomerase [Carbohydrate transport and metabolism]
Probab=88.22 E-value=2 Score=46.04 Aligned_cols=62 Identities=23% Similarity=0.328 Sum_probs=47.2
Q ss_pred EEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441 203 LAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD 267 (539)
Q Consensus 203 l~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g 267 (539)
+.-.++.++.-..--..|.+.|+.|++|+|++..-. ....-|.+|||++|||-....+-..+
T Consensus 335 v~~~~v~~g~~~~~~~~~~~SIllv~~G~g~l~~~t---~~~~~v~rG~V~fI~a~~~i~~~~~s 396 (411)
T KOG2757|consen 335 VLETKVPTGESYKFPGVDGPSILLVLKGSGILKTDT---DSKILVNRGDVLFIPANHPIHLSSSS 396 (411)
T ss_pred EEEeecCCCceEEeecCCCceEEEEEecceEEecCC---CCceeeccCcEEEEcCCCCceeeccC
Confidence 333344555444444689999999999999987633 45678999999999999999887775
No 136
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=87.78 E-value=0.86 Score=39.46 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=20.4
Q ss_pred eEEeeeCCCcEEEeCCCCeEEEEcCCC
Q 039441 425 KISANLSPGVVFIIPPGHPIALVASPN 451 (539)
Q Consensus 425 ~~~~~L~~GDV~vVPaG~~h~i~n~gn 451 (539)
..+...++||+++||+|..|+..|.|+
T Consensus 80 ~~~~~Q~~Ge~V~i~pg~~H~v~n~g~ 106 (114)
T PF02373_consen 80 VYRFVQKPGEFVFIPPGAYHQVFNLGD 106 (114)
T ss_dssp -EEEEEETT-EEEE-TT-EEEEEESSS
T ss_pred cccceECCCCEEEECCCceEEEEeCCc
Confidence 445678999999999999999999976
No 137
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=87.53 E-value=3.1 Score=44.45 Aligned_cols=163 Identities=17% Similarity=0.237 Sum_probs=85.1
Q ss_pred cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCC----------------
Q 039441 219 SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVN---------------- 282 (539)
Q Consensus 219 ~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n---------------- 282 (539)
+|-++|+|+.+|+.++-... -.-.|++||+-+||.|+.+-+.=.++ + .+++..=..+-
T Consensus 144 ADge~Livpq~G~l~l~te~----G~l~v~pgeiavIPRG~~frve~~~~-~-~rgy~~En~ga~~~lpe~G~ig~n~la 217 (427)
T COG3508 144 ADGELLIVPQQGELRLKTEL----GVLEVEPGEIAVIPRGTTFRVELKDG-E-ARGYGCENYGAKFRLPELGPIGANGLA 217 (427)
T ss_pred CCCCEEEEeecceEEEEEee----ceEEecCCcEEEeeCCceEEEEecCC-c-eEEEEEeeccccccccccccccccccc
Confidence 56678999999988765422 14689999999999999998887663 2 33332221110
Q ss_pred CCCCcee-------ccccCccEEEcChhhhhhcC----ccccccCCCCCCCCcceecCCCCCcc--cCCC--ceEE-EeC
Q 039441 283 TPGQFRV-------QQRQQGTIKRASQEQLKALS----HHASSRRRHGRGSTAPFNLLSRKPIY--NNNF--GRFF-EAT 346 (539)
Q Consensus 283 ~pg~f~~-------~~q~~G~Ivrv~~eql~~l~----~~~~~~~~~~~~~~~~fnl~~~~p~~--sn~~--G~i~-~~~ 346 (539)
+|..|.. +.++--+|+|.- +++.... |-.-- -|.++-.+..|+|..-.|+- +-.+ =+++ +++
T Consensus 218 npRDf~tPvar~ed~e~~~qlvvK~~-g~l~~~e~~hsPlDVV-aWhGnl~Pykydl~~f~pi~t~~~dhPdPSifTvlt 295 (427)
T COG3508 218 NPRDFKTPVARYEDSEGPTQLVVKTH-GGLWAVELDHSPLDVV-AWHGNLAPYKYDLRDFNPIGTISYDHPDPSIFTVLT 295 (427)
T ss_pred ChhhccCceeeecccCCCeEEEEEec-CcEEEEecCCCCceeE-eecCcccceEeeeeccccccceeccCCCCceEEEEe
Confidence 1233332 222333555532 2232211 10000 12333455666776555541 1111 1222 222
Q ss_pred C-cccccccccceeEEE--EEEcCCceecceecCC-CCEEEEEEece
Q 039441 347 P-KDYQQLQEIDAGVTY--VEINQGGMMVPHYNSK-ATTIVLVVEGR 389 (539)
Q Consensus 347 ~-~~fP~L~~l~isva~--v~L~pGgm~~PHwhpn-A~ei~yV~~G~ 389 (539)
+ .+-|.+...+.-+.- ....++++..|.||-| ++|++..+.|.
T Consensus 296 apsd~~g~~~cdFVifpprw~~~e~tfrppwyHrN~~sEfmgli~G~ 342 (427)
T COG3508 296 APSDTPGFANCDFVIFPPRWLVAEQTFRPPWYHRNDMSEFMGLISGQ 342 (427)
T ss_pred cCCCCCCeeEEEEEecCchhcccccccCCCceecchHHHHHhHhhch
Confidence 2 233333322222211 3445799999999966 77888888775
No 138
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=87.49 E-value=0.71 Score=49.38 Aligned_cols=92 Identities=23% Similarity=0.365 Sum_probs=54.5
Q ss_pred cccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceE--EEEEecCCCCc--cchhhhhhhhHHHHHHhhhcceee
Q 039441 350 YQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRG--RFEMGGPLSSR--WSQESQREQQEEEEEEESSRELQK 425 (539)
Q Consensus 350 fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g--~v~vV~p~gs~--~s~~~~~g~~~~~~~e~~~~~y~~ 425 (539)
+|.-+.-++.|+ -..+||-+.|||-+. + +|+++|.| +-.|-.+-... -. .. - ---..+-+-.
T Consensus 113 lP~wr~ddiMIS--~a~~GGgvg~H~D~Y-D--VfliQg~G~RRW~v~~~~~~~~~~~-~~---d-----~~~~~~f~~~ 178 (383)
T COG2850 113 LPDWRIDDIMIS--FAAPGGGVGPHFDQY-D--VFLIQGQGRRRWRVGKKCNMSTLCP-HP---D-----LLILAPFEPD 178 (383)
T ss_pred CccccccceEEE--EecCCCccCccccch-h--eeEEeecccceeecCCcccccCcCC-Cc---c-----hhhcCCCCch
Confidence 466565567777 678999999999633 2 56666655 44443331111 00 00 0 0000112234
Q ss_pred EEeeeCCCcEEEeCCCCeEEEEcCCCCcEEE
Q 039441 426 ISANLSPGVVFIIPPGHPIALVASPNEKLLT 456 (539)
Q Consensus 426 ~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~ 456 (539)
++..|.+|||++||+|++|+-++- ++-+.+
T Consensus 179 ~d~vlepGDiLYiPp~~~H~gvae-~dc~ty 208 (383)
T COG2850 179 IDEVLEPGDILYIPPGFPHYGVAE-DDCMTY 208 (383)
T ss_pred hhhhcCCCceeecCCCCCcCCccc-ccccce
Confidence 556789999999999999999997 333443
No 139
>PLN02658 homogentisate 1,2-dioxygenase
Probab=87.48 E-value=3.5 Score=45.24 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=50.3
Q ss_pred ceeEEEEEEcCCce-ecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441 357 DAGVTYVEINQGGM-MVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV 435 (539)
Q Consensus 357 ~isva~v~L~pGgm-~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV 435 (539)
||++.....+. +| -.-.+|.++++++|+-+|.+.+.--.- ++ .|++||+
T Consensus 125 G~ai~iy~~n~-sM~~~~f~NaDGD~Livpq~G~l~i~TEfG---------------------------~L--~v~pgei 174 (435)
T PLN02658 125 GYAIHMYVANK-SMDDCAFCNADGDFLIVPQQGRLWIKTELG---------------------------KL--QVSPGEI 174 (435)
T ss_pred CcEEEEEeCCC-CCccceeecCCCCEEEEEEeCCEEEEEecc---------------------------ce--EecCCCE
Confidence 55555555544 56 455789999999999999998865443 22 5899999
Q ss_pred EEeCCCCeEEEEcCCCCcEEEEE
Q 039441 436 FIIPPGHPIALVASPNEKLLTVG 458 (539)
Q Consensus 436 ~vVPaG~~h~i~n~gne~l~~v~ 458 (539)
+|||+|..+.+.=. +.+...+.
T Consensus 175 ~VIPRG~~frv~l~-~gp~rgyv 196 (435)
T PLN02658 175 VVIPRGFRFAVDLP-DGPSRGYV 196 (435)
T ss_pred EEecCccEEEEecC-CCCeeEEE
Confidence 99999998876532 23444433
No 140
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=87.46 E-value=2.6 Score=41.75 Aligned_cols=95 Identities=15% Similarity=0.196 Sum_probs=53.0
Q ss_pred EEEEEEcCCceecceecCCC--CEEEEEE--eceEEEEEecCCCCcc-chhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441 360 VTYVEINQGGMMVPHYNSKA--TTIVLVV--EGRGRFEMGGPLSSRW-SQESQREQQEEEEEEESSRELQKISANLSPGV 434 (539)
Q Consensus 360 va~v~L~pGgm~~PHwhpnA--~ei~yV~--~G~g~v~vV~p~gs~~-s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD 434 (539)
+=.+.+.+|+...+|.||++ .-+.||. .|.|.+.+..|..... ......... ..... ..+...-++||
T Consensus 98 ~W~ni~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~----~~~~~---~~~~v~P~~G~ 170 (201)
T TIGR02466 98 AWVNILPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNA----KRAVQ---RFVYVPPQEGR 170 (201)
T ss_pred EeEEEcCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCcc----ccccC---ccEEECCCCCe
Confidence 44556789999999999997 3445554 3344555555432100 000000000 00000 12224569999
Q ss_pred EEEeCCCCeEEEEcC-CCCcEEEEEEee
Q 039441 435 VFIIPPGHPIALVAS-PNEKLLTVGFSL 461 (539)
Q Consensus 435 V~vVPaG~~h~i~n~-gne~l~~v~F~~ 461 (539)
++++|.-..|..... +++.-..|+|..
T Consensus 171 lvlFPS~L~H~v~p~~~~~~RISiSFNl 198 (201)
T TIGR02466 171 VLLFESWLRHEVPPNESEEERISVSFNY 198 (201)
T ss_pred EEEECCCCceecCCCCCCCCEEEEEEee
Confidence 999999999998664 445566677753
No 141
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=86.96 E-value=5.4 Score=34.02 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=49.7
Q ss_pred CCCeeecccccCCCcEEE--EEeceEEEEEEeCCCc---eeeecCCCcEEEeCCCCeEEEEecCCCce
Q 039441 209 NPSTLVVPHHSDAETILV--LLKGKGVITLVSHERR---ESFNMEHGDVISVPAGTTYYLSNQDNVDR 271 (539)
Q Consensus 209 ~P~~l~lPh~~dA~~~~y--V~~G~g~i~~v~pg~~---~~~~v~~GDV~~iPaG~~h~i~N~g~~e~ 271 (539)
=|.+|+-.|...+.-|+- |++|+......++.+. +..-+.+|+...|++.+.|.|.-.+++-.
T Consensus 11 lP~~l~~~H~TK~GtWg~l~Vl~G~L~f~~~~~~~~~~~~~~~~~~~~~~~i~Pq~wH~V~p~s~D~~ 78 (82)
T PF09313_consen 11 LPAALLERHNTKAGTWGKLRVLEGELKFYGLDEEGEEPEEEVFIPAGQPPVIEPQQWHRVEPLSDDLR 78 (82)
T ss_dssp S-GGGGSSBCCSTTEEEEEEEEESEEEEEEESSTT-SESEEEEEETTEEEEE-TT-EEEEEESSTT-E
T ss_pred CcHHHHhhcCCCCCeEEEEEEEeeEEEEEEECCCCCceeEEEEeCCCCCceeCCCceEEEEECCCCEE
Confidence 688999999999998876 8999999999988653 35678999999999999999998875433
No 142
>PF05726 Pirin_C: Pirin C-terminal cupin domain; InterPro: IPR008778 This entry represents C-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 1J1L_A 3ACL_A 2P17_A.
Probab=86.90 E-value=3.8 Score=35.84 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=47.5
Q ss_pred EEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCC
Q 039441 361 TYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPP 440 (539)
Q Consensus 361 a~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPa 440 (539)
.-+.|+||+-+.....+.-+-++||++|.+.+ ... . ..|.+|+++++..
T Consensus 2 ~di~l~~g~~~~~~~~~~~~~~iyv~~G~~~v---~~~--------------------------~--~~~~~~~~~~l~~ 50 (104)
T PF05726_consen 2 LDIKLEPGASFTLPLPPGHNAFIYVLEGSVEV---GGE--------------------------E--DPLEAGQLVVLED 50 (104)
T ss_dssp EEEEE-TT-EEEEEEETT-EEEEEEEESEEEE---TTT--------------------------T--EEEETTEEEEE-S
T ss_pred EEEEECCCCEEEeecCCCCEEEEEEEECcEEE---CCC--------------------------c--ceECCCcEEEECC
Confidence 34788999987655566677999999999755 221 1 3589999999998
Q ss_pred CCeEEEEcCCCCcEEEEEEe
Q 039441 441 GHPIALVASPNEKLLTVGFS 460 (539)
Q Consensus 441 G~~h~i~n~gne~l~~v~F~ 460 (539)
|-...+.+.+ ++..+|.|.
T Consensus 51 g~~i~~~a~~-~~a~~lll~ 69 (104)
T PF05726_consen 51 GDEIELTAGE-EGARFLLLG 69 (104)
T ss_dssp ECEEEEEESS-SSEEEEEEE
T ss_pred CceEEEEECC-CCcEEEEEE
Confidence 8888888874 667776554
No 143
>PF05118 Asp_Arg_Hydrox: Aspartyl/Asparaginyl beta-hydroxylase; InterPro: IPR007803 The alpha-ketoglutarate-dependent dioxygenase aspartyl (asparaginyl) beta-hydroxylase (1.14.11.16 from EC) specifically hydroxylates one aspartic or asparagine residue in certain epidermal growth factor-like domains of a number of proteins. Its action may be due to histidine-675, which, when mutated to an alanine residue, causes the loss of enzymatic activity in the protein []. An invertebrate alpha-ketoglutarate-dependent aspartyl/asparaginyl beta-hydroxylase, which posttranslationally hydroxylates specific aspartyl or asparaginyl residues within epidermal growth factor-like modules [], activity was found to be similar to that of the purified mammalian aspartyl/asparaginyl beta-hydroxylase with respect to cofactor requirements, stereochemistry and substrate sequence specificity []. This enzyme requires Fe2+ as a cofactor. Some vitamin K-dependent coagulation factors, as well as synthetic peptides based on the structure of the first epidermal growth factor domain of human coagulation factor IX or X, can act as acceptors.; GO: 0018193 peptidyl-amino acid modification, 0030176 integral to endoplasmic reticulum membrane; PDB: 3RCQ_A 1E5S_A 1E5R_B.
Probab=86.05 E-value=4.2 Score=38.62 Aligned_cols=78 Identities=10% Similarity=0.161 Sum_probs=46.4
Q ss_pred eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecC-CCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441 358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGP-LSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF 436 (539)
Q Consensus 358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p-~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~ 436 (539)
..|.+..|.||+...||.-+....+ +..+.++.| .+.. ....-.+...++|.++
T Consensus 80 ~~~~~s~l~pg~~I~pH~d~~~~~l------R~Hl~L~~p~~~~~-------------------~~v~~~~~~w~~G~~~ 134 (163)
T PF05118_consen 80 GRVRFSRLPPGTHIKPHRDPTNLRL------RLHLPLIVPNPGCY-------------------IRVGGETRHWREGECW 134 (163)
T ss_dssp EEEEEEEEECTEEEEEE-SS-TTEE------EEEEEEC--STTEE-------------------EEETTEEEB--CTEEE
T ss_pred hhEEEEEECCCCEECCeeCCCCcce------EEEEEEEcCCCCeE-------------------EEECCeEEEeccCcEE
Confidence 3478888999999999997654432 334455554 2111 0000123568999999
Q ss_pred EeCCCCeEEEEcCCCCcEEEEEEe
Q 039441 437 IIPPGHPIALVASPNEKLLTVGFS 460 (539)
Q Consensus 437 vVPaG~~h~i~n~gne~l~~v~F~ 460 (539)
++=..++|...|.+++.-.+|.+.
T Consensus 135 ~fD~s~~H~~~N~~~~~Rv~L~vD 158 (163)
T PF05118_consen 135 VFDDSFEHEVWNNGDEDRVVLIVD 158 (163)
T ss_dssp EE-TTS-EEEEESSSS-EEEEEEE
T ss_pred EEeCCEEEEEEeCCCCCEEEEEEE
Confidence 999999999999988776666554
No 144
>TIGR01015 hmgA homogentisate 1,2-dioxygenase. Missing in human disease alkaptonuria.
Probab=85.79 E-value=4.5 Score=44.30 Aligned_cols=64 Identities=14% Similarity=0.192 Sum_probs=48.5
Q ss_pred ceeEEEEEEcCCce-ecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441 357 DAGVTYVEINQGGM-MVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV 435 (539)
Q Consensus 357 ~isva~v~L~pGgm-~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV 435 (539)
|+++.....+. +| -.-.+|.++++++|+-+|.+.+.--.- + -.|++||+
T Consensus 126 G~ai~iy~~~~-sM~~~~f~NaDGD~Livpq~G~l~i~TEfG---------------------------~--L~v~pgei 175 (429)
T TIGR01015 126 GLAIHIYLCNA-SMENRAFYNADGDFLIVPQQGALLITTEFG---------------------------R--LLVEPNEI 175 (429)
T ss_pred CceEEEEeCCC-CcccceeeccCCCEEEEEEeCcEEEEEecc---------------------------c--eEecCCCE
Confidence 45555555544 66 666788899999999999998865443 2 25899999
Q ss_pred EEeCCCCeEEEEcCC
Q 039441 436 FIIPPGHPIALVASP 450 (539)
Q Consensus 436 ~vVPaG~~h~i~n~g 450 (539)
+|||+|..+.+.-.+
T Consensus 176 ~VIPRG~~frv~l~g 190 (429)
T TIGR01015 176 CVIPRGVRFRVTVLE 190 (429)
T ss_pred EEecCccEEEEeeCC
Confidence 999999998876543
No 145
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=84.91 E-value=28 Score=32.49 Aligned_cols=86 Identities=16% Similarity=0.191 Sum_probs=58.3
Q ss_pred ceeEEEEEEcCCceecceecCCCCEEEEEEec-eEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCC--
Q 039441 357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEG-RGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPG-- 433 (539)
Q Consensus 357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G-~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~G-- 433 (539)
.+++.+.-|+++.+..-|=. ++++|-+...| ...+-++.|+++- . -.++-.++.+|
T Consensus 40 ~~T~Iy~LL~~~~~S~~Hrv-~sdEiw~~~~G~pl~l~~i~~dg~~--------~------------~~~LG~d~~~g~~ 98 (139)
T PF06172_consen 40 ASTSIYYLLTPGEFSAWHRV-DSDEIWHFHAGDPLELHLIDPDGSY--------E------------TVVLGPDLAAGER 98 (139)
T ss_dssp S-EEEEEEEETTBEEEEEEE-SSEEEEEEEEES-EEEEEECTTSTE--------E------------EEEESSTTCTTEB
T ss_pred cceEEEEEEcCCCCCccEEc-CCCEEEEEEcCCCEEEEEEcCCCCe--------E------------EEEECCCCCCCce
Confidence 36666777999999876665 89999999998 6889999998742 0 01333445566
Q ss_pred cEEEeCCCCeEEEEcCCCCcEEEEEEeecC
Q 039441 434 VVFIIPPGHPIALVASPNEKLLTVGFSLNA 463 (539)
Q Consensus 434 DV~vVPaG~~h~i~n~gne~l~~v~F~~na 463 (539)
=.++||+|....-.-.+..+..+|+-.+.+
T Consensus 99 ~q~vVp~G~W~aa~l~~~~~y~Lvsc~VaP 128 (139)
T PF06172_consen 99 PQVVVPAGTWQAAELEPEGDYSLVSCTVAP 128 (139)
T ss_dssp SEEEE-TTSEEEEEECESSSEEEEEEEESS
T ss_pred EEEEECCCEEEEccccCCCCEEEEEEEEcC
Confidence 368999999888643445567777655554
No 146
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=84.27 E-value=3.6 Score=41.78 Aligned_cols=45 Identities=22% Similarity=0.380 Sum_probs=34.4
Q ss_pred CCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCC
Q 039441 378 KATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPN 451 (539)
Q Consensus 378 nA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gn 451 (539)
++..|.||++|.|.+. + .+ + ...+++||+++||+|.+|......+
T Consensus 48 ~~~~i~~~~~G~~~~~-~-~~-------------------------~--~~~~~~g~~i~i~p~~~h~~~~~~~ 92 (290)
T PRK10572 48 KGYILNLTIRGQGVIF-N-GG-------------------------R--AFVCRPGDLLLFPPGEIHHYGRHPD 92 (290)
T ss_pred cceEEEEEEeccEEEe-c-CC-------------------------e--eEecCCCCEEEECCCCceeeccCCC
Confidence 4567899999999874 2 21 1 2579999999999999998766433
No 147
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=83.78 E-value=1.9 Score=43.00 Aligned_cols=59 Identities=19% Similarity=0.315 Sum_probs=49.0
Q ss_pred CCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441 209 NPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD 267 (539)
Q Consensus 209 ~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g 267 (539)
-||.=--=|--..++|+|-.+|..++-+|..+..+-.-|++||++.+||-++|+=+--.
T Consensus 41 GPN~RkdyHieegeE~FyQ~KGdMvLKVie~g~~rDivI~qGe~flLParVpHSPqRFa 99 (279)
T KOG3995|consen 41 GPNTRKDYHIEEGEEVFYQLKGDMVLKVLEQGKHRDVVIRQGEIFLLPARVPHSPQRFA 99 (279)
T ss_pred CCCcccccccCCcchhheeecCceEEeeeccCcceeeEEecCcEEEeccCCCCChhhhc
Confidence 45444334555789999999999999999999999889999999999999999866443
No 148
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.55 E-value=0.77 Score=50.55 Aligned_cols=79 Identities=25% Similarity=0.318 Sum_probs=50.3
Q ss_pred EEEEEcCCce--ecceecCCCCEEEEEEeceEEEEEecCCCCcc---chhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441 361 TYVEINQGGM--MVPHYNSKATTIVLVVEGRGRFEMGGPLSSRW---SQESQREQQEEEEEEESSRELQKISANLSPGVV 435 (539)
Q Consensus 361 a~v~L~pGgm--~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~---s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV 435 (539)
+-+-|+|-+- ++|||. +-...++=++|+-+.-+..|..+.. .-++.+=. ++.. .--++.+-|++||+
T Consensus 319 aNvYLTPagSqGfaPHyD-dIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~-----eedl--gePV~e~vle~GDl 390 (629)
T KOG3706|consen 319 ANVYLTPAGSQGFAPHYD-DIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFT-----EEDL--GEPVHEFVLEPGDL 390 (629)
T ss_pred cceeecCCCCCCCCCchh-hhhhhhheeccceeeEeecCCCcHhhhhhccCCCCC-----hhHh--CCchHHhhcCCCcE
Confidence 3455555433 599997 7777777889999999999876540 00000000 0000 01356678999999
Q ss_pred EEeCCCCeEEEE
Q 039441 436 FIIPPGHPIALV 447 (539)
Q Consensus 436 ~vVPaG~~h~i~ 447 (539)
++||+|+.|--.
T Consensus 391 lYfPRG~IHQA~ 402 (629)
T KOG3706|consen 391 LYFPRGTIHQAD 402 (629)
T ss_pred EEecCcceeecc
Confidence 999999999743
No 149
>KOG3706 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.53 E-value=0.8 Score=50.41 Aligned_cols=54 Identities=24% Similarity=0.356 Sum_probs=43.0
Q ss_pred eecccccCCCcEEEEEeceEEEEEEeCCCce---------------------eeecCCCcEEEeCCCCeEEEEec
Q 039441 213 LVVPHHSDAETILVLLKGKGVITLVSHERRE---------------------SFNMEHGDVISVPAGTTYYLSNQ 266 (539)
Q Consensus 213 l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~---------------------~~~v~~GDV~~iPaG~~h~i~N~ 266 (539)
-+-|||-|-+..+.-+.|+-.--+-.|..+. .+-|++||++|||.|++|--.-.
T Consensus 330 GfaPHyDdIeaFvlQvEGrK~Wrly~P~~~~eel~l~sS~Nf~eedlgePV~e~vle~GDllYfPRG~IHQA~t~ 404 (629)
T KOG3706|consen 330 GFAPHYDDIEAFVLQVEGRKHWRLYHPTVPLEELALVSSDNFTEEDLGEPVHEFVLEPGDLLYFPRGTIHQADTP 404 (629)
T ss_pred CCCCchhhhhhhhheeccceeeEeecCCCcHhhhhhccCCCCChhHhCCchHHhhcCCCcEEEecCcceeecccc
Confidence 4579999999998899998877777776541 14589999999999999955443
No 150
>TIGR00218 manA mannose-6-phosphate isomerase, class I. The names phosphomannose isomerase and mannose-6-phosphate isomerase are synonomous. This family contains two rather deeply branched groups. One group contains an experimentally determined phosphomannose isomerase of Streptococcus mutans as well as three uncharacterized paralogous proteins of Bacillus subtilis, all at more than 50 % identity to each other, plus a more distant homolog from Archaeoglobus fulgidus. The other group contains members from E. coli, budding yeast, Borrelia burgdorferi, etc.
Probab=81.86 E-value=5.5 Score=41.51 Aligned_cols=61 Identities=15% Similarity=0.275 Sum_probs=43.5
Q ss_pred cceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEE
Q 039441 198 IDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLS 264 (539)
Q Consensus 198 v~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~ 264 (539)
...+.+..+++.... .+. -.+...+++|+.|+++|.. . ..+..|++|++++|||++..+..
T Consensus 232 ~~~F~~~~~~~~~~~-~~~-~~~~~~il~v~~G~~~i~~--~--~~~~~l~~G~~~~ipa~~~~~~i 292 (302)
T TIGR00218 232 TEYFSVYKWDISGKA-EFI-QQQSALILSVLEGSGRIKS--G--GKTLPLKKGESFFIPAHLGPFTI 292 (302)
T ss_pred CCCeEEEEEEeCCce-eec-cCCCcEEEEEEcceEEEEE--C--CEEEEEecccEEEEccCCccEEE
Confidence 455666666666542 222 2457889999999999864 2 25688999999999999965555
No 151
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=81.50 E-value=12 Score=32.80 Aligned_cols=71 Identities=17% Similarity=0.151 Sum_probs=50.6
Q ss_pred eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441 358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI 437 (539)
Q Consensus 358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v 437 (539)
-......|.||- -++++.+.|++=|+.|...|.+-.... -..+.+|+.|.
T Consensus 23 ~~~TlGVm~pGe---Y~F~T~~~E~M~vvsG~l~V~lpg~~e---------------------------w~~~~aGesF~ 72 (94)
T PF06865_consen 23 SKKTLGVMLPGE---YTFGTSAPERMEVVSGELEVKLPGEDE---------------------------WQTYSAGESFE 72 (94)
T ss_dssp EEEEEEEE-SEC---EEEEESS-EEEEEEESEEEEEETT-SS----------------------------EEEETT-EEE
T ss_pred CcceEEEEeeeE---EEEcCCCCEEEEEEEeEEEEEcCCCcc---------------------------cEEeCCCCeEE
Confidence 455666777886 378899999999999999887755431 14579999999
Q ss_pred eCCCCeEEEEcCCCCcEEEEEEe
Q 039441 438 IPPGHPIALVASPNEKLLTVGFS 460 (539)
Q Consensus 438 VPaG~~h~i~n~gne~l~~v~F~ 460 (539)
||++.-+-+... +...++|..
T Consensus 73 VpanssF~v~v~--~~~~Y~C~y 93 (94)
T PF06865_consen 73 VPANSSFDVKVK--EPTAYLCSY 93 (94)
T ss_dssp E-TTEEEEEEES--S-EEEEEEE
T ss_pred ECCCCeEEEEEC--cceeeEEEe
Confidence 999999988775 568888743
No 152
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=81.25 E-value=5.3 Score=40.65 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=44.7
Q ss_pred cceeeEEEeeeCCCeeec-ccc---cCC--CcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441 198 IDNYRLAILEANPSTLVV-PHH---SDA--ETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD 267 (539)
Q Consensus 198 v~~~Rl~il~l~P~~l~l-Ph~---~dA--~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g 267 (539)
+...+|+-+...|..+.- +.+ .+. -.+.|++.|.+.+.. . ...+.|.+||++.+|++.+|.+.-.+
T Consensus 42 ~~~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~--~--g~~~~l~~G~~~l~~~~~p~~~~~~~ 113 (302)
T PRK09685 42 AGGLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQ--D--DRQVQLAAGDITLIDASRPCSIYPQG 113 (302)
T ss_pred eCCEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEE--C--CeEEEEcCCCEEEEECCCCcEeecCC
Confidence 445667777778875543 332 222 235567788877654 2 24688999999999999999887654
No 153
>PF14861 Antimicrobial21: Plant antimicrobial peptide
Probab=80.77 E-value=1.9 Score=30.33 Aligned_cols=25 Identities=32% Similarity=0.785 Sum_probs=19.6
Q ss_pred HHHHHHhhhhccchHhHHHHHHHHHH
Q 039441 106 EQCLKQCERRESGEQQQQQCKSWCEK 131 (539)
Q Consensus 106 ~~c~~~c~~~~~~~~~~~~c~~~c~~ 131 (539)
..|..+|+.-. -+-.|++||+.|..
T Consensus 5 ~~C~k~Cqhh~-D~~~kq~Cv~~C~r 29 (31)
T PF14861_consen 5 DRCRKQCQHHR-DPWRKQQCVQDCRR 29 (31)
T ss_pred hHHHHHhhccc-CHHHHHHHHHHHHh
Confidence 47999996655 34589999999975
No 154
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=80.64 E-value=4.7 Score=32.42 Aligned_cols=48 Identities=15% Similarity=0.377 Sum_probs=40.3
Q ss_pred eeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCce--eeecCCCcEEE
Q 039441 207 EANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRE--SFNMEHGDVIS 254 (539)
Q Consensus 207 ~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~--~~~v~~GDV~~ 254 (539)
+..++..+.......+.++||++|...+.....+... ...+.+||++-
T Consensus 3 ~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g 52 (91)
T PF00027_consen 3 TYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFG 52 (91)
T ss_dssp EESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEES
T ss_pred EECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeecccc
Confidence 4488888888888899999999999999999988764 57778888763
No 155
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=80.63 E-value=6.3 Score=31.82 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=43.4
Q ss_pred eeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEe
Q 039441 207 EANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSN 265 (539)
Q Consensus 207 ~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N 265 (539)
+|.|+..+-.. ..++..+-|.+|+.-||. .+...-+-|.+||.+.+|+|.-.||..
T Consensus 3 ~L~~g~~~~lr-~~~~~~l~v~~G~vWlT~--~g~~~D~~L~~G~~l~l~~g~~vvl~a 58 (63)
T PF11142_consen 3 ELAPGETLSLR-AAAGQRLRVESGRVWLTR--EGDPDDYWLQAGDSLRLRRGGRVVLSA 58 (63)
T ss_pred EeCCCceEEeE-cCCCcEEEEccccEEEEC--CCCCCCEEECCCCEEEeCCCCEEEEEe
Confidence 44655544333 344556899999999987 667778899999999999999999887
No 156
>PRK10579 hypothetical protein; Provisional
Probab=79.50 E-value=20 Score=31.49 Aligned_cols=70 Identities=14% Similarity=0.151 Sum_probs=53.5
Q ss_pred eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441 358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI 437 (539)
Q Consensus 358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v 437 (539)
-......|-||- -++++.+.|++=|+.|...|.+-.... -..+++|+-|.
T Consensus 23 ~~kTlGVm~pGe---y~F~T~~~E~MeivsG~l~V~Lpg~~e---------------------------w~~~~aG~sF~ 72 (94)
T PRK10579 23 GRASVGVMAEGE---YTFSTAEPEEMTVISGALNVLLPGATD---------------------------WQVYEAGEVFN 72 (94)
T ss_pred CeeEEEEEeeeE---EEEcCCCcEEEEEEeeEEEEECCCCcc---------------------------cEEeCCCCEEE
Confidence 344555667776 478999999999999998887655431 24689999999
Q ss_pred eCCCCeEEEEcCCCCcEEEEEE
Q 039441 438 IPPGHPIALVASPNEKLLTVGF 459 (539)
Q Consensus 438 VPaG~~h~i~n~gne~l~~v~F 459 (539)
||++.-+-+... +...++|.
T Consensus 73 VpanssF~l~v~--~~t~Y~C~ 92 (94)
T PRK10579 73 VPGHSEFHLQVA--EPTSYLCR 92 (94)
T ss_pred ECCCCeEEEEEC--cceeeEEE
Confidence 999999888775 45777774
No 157
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=79.12 E-value=5 Score=40.88 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=43.5
Q ss_pred ceeEEEEEEcCCceec-----ceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeC
Q 039441 357 DAGVTYVEINQGGMMV-----PHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLS 431 (539)
Q Consensus 357 ~isva~v~L~pGgm~~-----PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~ 431 (539)
++.++.+..++..+.- .+.+.+.-.++++++|.+.+.+-.. ...|.
T Consensus 44 ~~~l~~~~~~~~~~~R~~~~i~~~~~~~~~l~~~~~G~~~~~~~g~-----------------------------~~~l~ 94 (302)
T PRK09685 44 GLKLSTVTTNAVNLSRTWQEIKHSDDAHFFTVFQLSGHAIIEQDDR-----------------------------QVQLA 94 (302)
T ss_pred CEEEEEEecCCceEEeChHHhccCCCCcEEEEEEecceEEEEECCe-----------------------------EEEEc
Confidence 3566666655543322 3333345567888999887754221 24699
Q ss_pred CCcEEEeCCCCeEEEEcCCC
Q 039441 432 PGVVFIIPPGHPIALVASPN 451 (539)
Q Consensus 432 ~GDV~vVPaG~~h~i~n~gn 451 (539)
+||++++|++.||.+...++
T Consensus 95 ~G~~~l~~~~~p~~~~~~~~ 114 (302)
T PRK09685 95 AGDITLIDASRPCSIYPQGL 114 (302)
T ss_pred CCCEEEEECCCCcEeecCCC
Confidence 99999999999998776544
No 158
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=78.34 E-value=17 Score=36.98 Aligned_cols=84 Identities=23% Similarity=0.338 Sum_probs=64.1
Q ss_pred ccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCC-----C-ceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441 195 LRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHE-----R-RESFNMEHGDVISVPAGTTYYLSNQDN 268 (539)
Q Consensus 195 l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg-----~-~~~~~v~~GDV~~iPaG~~h~i~N~g~ 268 (539)
-.|..-..+.+++|+++.-..-.-.+-..++.++.|++.|+.-... . ...|.=++=|.++||+|.++.+..+.+
T Consensus 23 sagw~YVGF~~~~L~~Ges~~~~~~~~E~clV~v~Gk~~vs~~g~~f~~iG~R~SvFe~~p~~~vYvp~g~~~~vtA~t~ 102 (270)
T COG3718 23 SAGWEYVGFRLLRLAAGESATEETGDRERCLVLVTGKATVSAHGSTFGEIGTRMSVFERKPPDSVYVPAGSAFSVTATTD 102 (270)
T ss_pred CCCceeEEEEEEEccCCCcccccCCCceEEEEEEeeeEEEeeccchHhhcccccccccCCCCCeEEecCCceEEEEeecc
Confidence 3466666777888899998888888888999999999998864432 2 245777788999999999999999863
Q ss_pred CceEEEEEEeccC
Q 039441 269 VDRLHVAKLLQPV 281 (539)
Q Consensus 269 ~e~L~iv~l~d~~ 281 (539)
|+++...-|+
T Consensus 103 ---~~vAvC~AP~ 112 (270)
T COG3718 103 ---LEVAVCSAPG 112 (270)
T ss_pred ---eEEEEEeCCC
Confidence 5555555443
No 159
>PRK10579 hypothetical protein; Provisional
Probab=77.07 E-value=8.8 Score=33.68 Aligned_cols=54 Identities=15% Similarity=0.231 Sum_probs=44.1
Q ss_pred eeeccc-c---cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441 212 TLVVPH-H---SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD 267 (539)
Q Consensus 212 ~l~lPh-~---~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g 267 (539)
|+++|. | .+++++.=|+.|...|-+ ||..+-..+..|+-+.|||..-|-|....
T Consensus 28 GVm~pGey~F~T~~~E~MeivsG~l~V~L--pg~~ew~~~~aG~sF~VpanssF~l~v~~ 85 (94)
T PRK10579 28 GVMAEGEYTFSTAEPEEMTVISGALNVLL--PGATDWQVYEAGEVFNVPGHSEFHLQVAE 85 (94)
T ss_pred EEEeeeEEEEcCCCcEEEEEEeeEEEEEC--CCCcccEEeCCCCEEEECCCCeEEEEECc
Confidence 445555 3 689999999999887665 88777889999999999999998887653
No 160
>PF05995 CDO_I: Cysteine dioxygenase type I; InterPro: IPR010300 Cysteine dioxygenase type I (1.13.11.20 from EC) converts cysteine to cysteinesulphinic acid and is the rate-limiting step in sulphate production.; GO: 0005506 iron ion binding, 0017172 cysteine dioxygenase activity, 0046439 L-cysteine metabolic process, 0055114 oxidation-reduction process; PDB: 2IC1_A 3EQE_B 3ELN_A 2B5H_A 2GH2_A 2Q4S_A 2ATF_A 2GM6_A 3USS_B.
Probab=76.38 E-value=27 Score=33.57 Aligned_cols=87 Identities=15% Similarity=0.026 Sum_probs=55.4
Q ss_pred ceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEE
Q 039441 357 DAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVF 436 (539)
Q Consensus 357 ~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~ 436 (539)
.+.+..+.-.||--..+|=|..+.-++.|++|...-+......... . ...-......+..|.++
T Consensus 74 ~~el~ll~W~pGq~S~IHDH~~s~g~~~vl~G~l~e~~y~~~~~~~-------~---------~~~~~~~~~~~~~g~~~ 137 (175)
T PF05995_consen 74 RFELWLLCWPPGQRSPIHDHGGSWGWVKVLSGELEETRYRRPDDGG-------A---------PLELVGRERLLPGGVTY 137 (175)
T ss_dssp T-EEEEEEE-TT-B--EEE-TTSEEEEEEEESEEEEEEEEESTSSS-----------------EEEECEEEEEETTTEEE
T ss_pred CeEEEEEEeCCCCcCCCCCCCCceEEEEEecceEEEEEeccCCccc-------C---------cccccCceEecCCCeEE
Confidence 4677788999999999999988999999999999888766543210 0 00001122346888888
Q ss_pred EeCCCCeEEEEcCC-CCcEEEEEE
Q 039441 437 IIPPGHPIALVASP-NEKLLTVGF 459 (539)
Q Consensus 437 vVPaG~~h~i~n~g-ne~l~~v~F 459 (539)
+++.+..|-+.|.+ ++..+-|=+
T Consensus 138 ~~~~~~iH~v~n~s~~~~avSLHv 161 (175)
T PF05995_consen 138 IFDPHGIHRVENPSGDEPAVSLHV 161 (175)
T ss_dssp EBTTTBEEEEEES-SSS-EEEEEE
T ss_pred ecCCCCeEEeccCCCCCCEEEEEE
Confidence 99999999997754 666555543
No 161
>PF04773 FecR: FecR protein; InterPro: IPR006860 FecR is involved in regulation of iron dicitrate transport. In the absence of citrate FecR inactivates FecI. FecR is probably a sensor that recognises iron dicitrate in the periplasm.
Probab=76.34 E-value=17 Score=30.37 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=44.0
Q ss_pred eeeCCCeee--cccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEE
Q 039441 206 LEANPSTLV--VPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLS 264 (539)
Q Consensus 206 l~l~P~~l~--lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~ 264 (539)
|.|.|++-+ .+........+++.+|+..+.+-..... .+.|+.++..+...|+.+++.
T Consensus 21 v~l~~~s~~~~~~~~~~~~~~~~L~~G~~~~~~~~~~~~-~~~V~T~~~~i~v~GT~f~v~ 80 (98)
T PF04773_consen 21 VRLGPNSRVSVDRDSGSEPTRLRLLSGEILFDVSPGKKR-PFEVRTPTATIGVRGTRFSVR 80 (98)
T ss_pred EEECCCcEEEEEcccCCCceEEEEcCCCEEEEEcccCCC-CEEEEeCCEEEEEecCEEEEE
Confidence 445999977 3334556668999999997776664443 399999999999999888664
No 162
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=75.31 E-value=12 Score=30.15 Aligned_cols=57 Identities=21% Similarity=0.218 Sum_probs=44.2
Q ss_pred EEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCC
Q 039441 363 VEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGH 442 (539)
Q Consensus 363 v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~ 442 (539)
..|.||..+. |.+.+...+-|.+|...++.-.. .-+.-|.+||.+.+|+|-
T Consensus 2 ~~L~~g~~~~--lr~~~~~~l~v~~G~vWlT~~g~---------------------------~~D~~L~~G~~l~l~~g~ 52 (63)
T PF11142_consen 2 FELAPGETLS--LRAAAGQRLRVESGRVWLTREGD---------------------------PDDYWLQAGDSLRLRRGG 52 (63)
T ss_pred EEeCCCceEE--eEcCCCcEEEEccccEEEECCCC---------------------------CCCEEECCCCEEEeCCCC
Confidence 3567777764 44677777999999999987442 234569999999999999
Q ss_pred eEEEEc
Q 039441 443 PIALVA 448 (539)
Q Consensus 443 ~h~i~n 448 (539)
-+++.+
T Consensus 53 ~vvl~a 58 (63)
T PF11142_consen 53 RVVLSA 58 (63)
T ss_pred EEEEEe
Confidence 998876
No 163
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=71.95 E-value=22 Score=35.00 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=44.2
Q ss_pred EEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCce--eeecCCCcEEEeCCC
Q 039441 203 LAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRE--SFNMEHGDVISVPAG 258 (539)
Q Consensus 203 l~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~--~~~v~~GDV~~iPaG 258 (539)
....+.+++.++...-..++.++||++|.+.+..+++++.+ ..-+.+||++-+.++
T Consensus 38 ~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~~~ 95 (230)
T PRK09391 38 ASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLESG 95 (230)
T ss_pred eeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceecccCC
Confidence 34455689988888888899999999999999999887764 345689998865443
No 164
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=70.79 E-value=28 Score=31.61 Aligned_cols=24 Identities=38% Similarity=0.697 Sum_probs=20.3
Q ss_pred eeeCCCcEEEeCCCCeEEEEcCCC
Q 039441 428 ANLSPGVVFIIPPGHPIALVASPN 451 (539)
Q Consensus 428 ~~L~~GDV~vVPaG~~h~i~n~gn 451 (539)
..+.+||+++++.+.++.+....+
T Consensus 75 ~~~~pg~~~l~d~~~~~~~~~~~~ 98 (172)
T PF14525_consen 75 VELAPGDVVLLDPGQPYRLEFSAG 98 (172)
T ss_pred EEEcCCeEEEEcCCCCEEEEECCC
Confidence 579999999999999988776544
No 165
>PF06865 DUF1255: Protein of unknown function (DUF1255); InterPro: IPR009664 This family consists of several conserved hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown; PDB: 2OYZ_A 3HQX_A.
Probab=70.00 E-value=14 Score=32.41 Aligned_cols=54 Identities=17% Similarity=0.316 Sum_probs=39.2
Q ss_pred eeeccc-c---cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecC
Q 039441 212 TLVVPH-H---SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQD 267 (539)
Q Consensus 212 ~l~lPh-~---~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g 267 (539)
|+++|- | ..++++.=|+.|...|-+ ||..+-..+..|+.+.|||.+-|-|.-..
T Consensus 28 GVm~pGeY~F~T~~~E~M~vvsG~l~V~l--pg~~ew~~~~aGesF~VpanssF~v~v~~ 85 (94)
T PF06865_consen 28 GVMLPGEYTFGTSAPERMEVVSGELEVKL--PGEDEWQTYSAGESFEVPANSSFDVKVKE 85 (94)
T ss_dssp EEE-SECEEEEESS-EEEEEEESEEEEEE--TT-SS-EEEETT-EEEE-TTEEEEEEESS
T ss_pred EEEeeeEEEEcCCCCEEEEEEEeEEEEEc--CCCcccEEeCCCCeEEECCCCeEEEEECc
Confidence 455565 3 689999999999887665 78777888999999999999998887653
No 166
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=69.51 E-value=12 Score=35.63 Aligned_cols=50 Identities=10% Similarity=0.142 Sum_probs=38.2
Q ss_pred eeeCCCeeeccccc--CCCcEEEEEeceEEEEEEeCCCce--eeecCCCcEEEe
Q 039441 206 LEANPSTLVVPHHS--DAETILVLLKGKGVITLVSHERRE--SFNMEHGDVISV 255 (539)
Q Consensus 206 l~l~P~~l~lPh~~--dA~~~~yV~~G~g~i~~v~pg~~~--~~~v~~GDV~~i 255 (539)
++.+++.++.-.-- .++.++||++|...+..+++++++ ..-+.+||++-.
T Consensus 9 ~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~ 62 (202)
T PRK13918 9 VTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGE 62 (202)
T ss_pred eEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeech
Confidence 34477776665555 678999999999999999987764 355699998843
No 167
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=69.25 E-value=22 Score=33.88 Aligned_cols=51 Identities=22% Similarity=0.327 Sum_probs=40.2
Q ss_pred EeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCce--eeecCCCcEEEe
Q 039441 205 ILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRE--SFNMEHGDVISV 255 (539)
Q Consensus 205 il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~--~~~v~~GDV~~i 255 (539)
+.+.+++.++...=-.++.+++|++|...+....+++.+ ...+.+||++-.
T Consensus 22 ~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 22 IHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGE 74 (211)
T ss_pred EEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEee
Confidence 344589998887777788999999999999888776553 457899998743
No 168
>PRK09391 fixK transcriptional regulator FixK; Provisional
Probab=68.70 E-value=35 Score=33.60 Aligned_cols=80 Identities=16% Similarity=0.027 Sum_probs=55.1
Q ss_pred ccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCc
Q 039441 355 EIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGV 434 (539)
Q Consensus 355 ~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GD 434 (539)
.+...+....+.+|-++.-.= -.++.+.+|++|...+..++++|. ..+..-+.+||
T Consensus 33 ~~~~~~~~~~~~kge~l~~~G-d~~~~ly~I~~G~vkl~~~~~~G~-----------------------e~i~~~~~~Gd 88 (230)
T PRK09391 33 HAGLVASEFSYKKGEEIYGEG-EPADYVYQVESGAVRTYRLLSDGR-----------------------RQIGAFHLPGD 88 (230)
T ss_pred cccceeeeEEECCCCEEECCC-CCCCeEEEEEeCEEEEEEECCCCc-----------------------EEEEEEecCCc
Confidence 345777888899998864443 357889999999999999998873 24445678999
Q ss_pred EEEeCCCCe--EEEEcCCCCcEEEEEEe
Q 039441 435 VFIIPPGHP--IALVASPNEKLLTVGFS 460 (539)
Q Consensus 435 V~vVPaG~~--h~i~n~gne~l~~v~F~ 460 (539)
+|-...+.+ +...+.. +..++.|.
T Consensus 89 ~fG~~~~~~~~~~~~A~~--ds~v~~i~ 114 (230)
T PRK09391 89 VFGLESGSTHRFTAEAIV--DTTVRLIK 114 (230)
T ss_pred eecccCCCcCCeEEEEcC--ceEEEEEE
Confidence 987766543 3444443 34444443
No 169
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A.
Probab=68.40 E-value=15 Score=31.77 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=32.7
Q ss_pred eCCCeeecccccCC---CcEEEEEe--ceEEEEEEeCCCc-------------------eeeecCCCcEEEeCCCCeEEE
Q 039441 208 ANPSTLVVPHHSDA---ETILVLLK--GKGVITLVSHERR-------------------ESFNMEHGDVISVPAGTTYYL 263 (539)
Q Consensus 208 l~P~~l~lPh~~dA---~~~~yV~~--G~g~i~~v~pg~~-------------------~~~~v~~GDV~~iPaG~~h~i 263 (539)
++++++..+|.|.. ..++||-- +.+-+.+.++... .....++||++.||+=..|+.
T Consensus 7 ~~~g~~~~~H~H~~s~~SgVyYv~~p~~~~~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~G~lvlFPs~l~H~v 86 (101)
T PF13759_consen 7 YRKGGYNEPHNHPNSWLSGVYYVQVPEGSGPLRFHDPRGSFSFGAPFDNYDQNDLNSPYYIVEPEEGDLVLFPSWLWHGV 86 (101)
T ss_dssp E-TT--EEEE--TT-SEEEEEECE--TTS-SEEEE-TTCCCGTTS----TTTTCCC-SEEEE---TTEEEEEETTSEEEE
T ss_pred eCCCCccCceECCCcCEEEEEEEECCCCCCceeeeCCCccceecccccccccCcccCceEEeCCCCCEEEEeCCCCEEec
Confidence 47889999996555 45666653 3455666666321 135789999999999999999
Q ss_pred E-ecC
Q 039441 264 S-NQD 267 (539)
Q Consensus 264 ~-N~g 267 (539)
. |.+
T Consensus 87 ~p~~~ 91 (101)
T PF13759_consen 87 PPNNS 91 (101)
T ss_dssp ----S
T ss_pred cCcCC
Confidence 8 444
No 170
>PF14525 AraC_binding_2: AraC-binding-like domain
Probab=68.17 E-value=39 Score=30.67 Aligned_cols=64 Identities=20% Similarity=0.287 Sum_probs=39.5
Q ss_pred eeEEEeeeCCCeee-cccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441 201 YRLAILEANPSTLV-VPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN 268 (539)
Q Consensus 201 ~Rl~il~l~P~~l~-lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~ 268 (539)
..++.+.......+ .++..|.=.+.+++.|.+.+.. . .....+.+||++.++++.++.+.-.++
T Consensus 34 ~~l~~~~~~~~~~vr~~~~~~~~~l~~~~~G~~~~~~--~--g~~~~~~pg~~~l~d~~~~~~~~~~~~ 98 (172)
T PF14525_consen 34 LRLSRISYGAQRRVRSDAPDDHYLLVLPLSGSARIEQ--G--GREVELAPGDVVLLDPGQPYRLEFSAG 98 (172)
T ss_pred EEEEEEEcCCCEEEECCCCCCEEEEEEEccCCEEEEE--C--CEEEEEcCCeEEEEcCCCCEEEEECCC
Confidence 44444444533333 3333334445555566665443 2 358899999999999999988876653
No 171
>COG3508 HmgA Homogentisate 1,2-dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=67.14 E-value=32 Score=37.04 Aligned_cols=68 Identities=18% Similarity=0.297 Sum_probs=47.7
Q ss_pred ccceeEEEEEEcCCcee-cceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCC
Q 039441 355 EIDAGVTYVEINQGGMM-VPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPG 433 (539)
Q Consensus 355 ~l~isva~v~L~pGgm~-~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~G 433 (539)
..+|++..-.++ -+|. .-.+|.+..+|+|+..|+.++ ++.-| + -.|++|
T Consensus 122 ~~g~~i~~y~~n-~sm~~~~f~NADge~Livpq~G~l~l--~te~G-------------------------~--l~v~pg 171 (427)
T COG3508 122 QDGVAIHVYKVN-ESMTKRFFRNADGELLIVPQQGELRL--KTELG-------------------------V--LEVEPG 171 (427)
T ss_pred cCceEEEEEEcc-ccchhhhhhcCCCCEEEEeecceEEE--EEeec-------------------------e--EEecCC
Confidence 334554444443 3566 677888888999999988765 34333 3 369999
Q ss_pred cEEEeCCCCeEEEEcCCCC
Q 039441 434 VVFIIPPGHPIALVASPNE 452 (539)
Q Consensus 434 DV~vVPaG~~h~i~n~gne 452 (539)
|+.|||+|..+-+.-.+++
T Consensus 172 eiavIPRG~~frve~~~~~ 190 (427)
T COG3508 172 EIAVIPRGTTFRVELKDGE 190 (427)
T ss_pred cEEEeeCCceEEEEecCCc
Confidence 9999999999887766443
No 172
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=66.48 E-value=20 Score=36.79 Aligned_cols=73 Identities=11% Similarity=0.003 Sum_probs=50.0
Q ss_pred CCceecceec-CCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCC-CcEEEeCCCCeE
Q 039441 367 QGGMMVPHYN-SKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSP-GVVFIIPPGHPI 444 (539)
Q Consensus 367 pGgm~~PHwh-pnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~-GDV~vVPaG~~h 444 (539)
|++++.||-| +..-+.+-|++|+..+-+.++.+.. .....|.+ ++.-+||.+..|
T Consensus 20 p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~-----------------------~~~~~l~~~~~~~~i~p~~wh 76 (287)
T PRK12335 20 PEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEE-----------------------LSEHIFDAENQPPFIEPQAWH 76 (287)
T ss_pred hHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCe-----------------------eeEEEEecCCCCceeCCcceE
Confidence 7788899987 4566788999999999999887631 22234544 345568888888
Q ss_pred EEEcCCCCcEEEEEEeec
Q 039441 445 ALVASPNEKLLTVGFSLN 462 (539)
Q Consensus 445 ~i~n~gne~l~~v~F~~n 462 (539)
.+....+.---+|.|...
T Consensus 77 ~v~~~s~d~~~~l~fy~~ 94 (287)
T PRK12335 77 RIEAASDDLECQLSFYCK 94 (287)
T ss_pred EEEEcCCCcEEEEEEEEc
Confidence 887764433444555544
No 173
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=66.03 E-value=38 Score=32.10 Aligned_cols=74 Identities=12% Similarity=0.007 Sum_probs=48.3
Q ss_pred EEEEEcCCceecceecC-CCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeC
Q 039441 361 TYVEINQGGMMVPHYNS-KATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIP 439 (539)
Q Consensus 361 a~v~L~pGgm~~PHwhp-nA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVP 439 (539)
..+.+.+|.++.--=.| .++.+.+|++|..++....++|. ..+..-+.+||+|--+
T Consensus 7 ~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~-----------------------e~~l~~~~~Gd~~G~~ 63 (202)
T PRK13918 7 DTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGN-----------------------ALTLRYVRPGEYFGEE 63 (202)
T ss_pred ceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCC-----------------------EEEEEEecCCCeechH
Confidence 45567777665332222 35789999999999999999873 2455667999987654
Q ss_pred C----CCeEEEEcCCCCcEEEEEE
Q 039441 440 P----GHPIALVASPNEKLLTVGF 459 (539)
Q Consensus 440 a----G~~h~i~n~gne~l~~v~F 459 (539)
. -++++..+..+ ..++.+
T Consensus 64 ~~~~~~~~~~~~A~~~--~~v~~i 85 (202)
T PRK13918 64 ALAGAERAYFAEAVTD--SRIDVL 85 (202)
T ss_pred HhcCCCCCceEEEcCc--eEEEEE
Confidence 2 24455555543 444444
No 174
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=65.51 E-value=18 Score=29.59 Aligned_cols=54 Identities=13% Similarity=0.193 Sum_probs=41.2
Q ss_pred EEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCc--eeeecCCCcEEEeC
Q 039441 203 LAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERR--ESFNMEHGDVISVP 256 (539)
Q Consensus 203 l~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~--~~~~v~~GDV~~iP 256 (539)
+.+.+++|+..+...-...+.+.||++|...+....+++. ....+.+||++-.+
T Consensus 17 ~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (115)
T cd00038 17 LEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGEL 72 (115)
T ss_pred ceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChH
Confidence 3445668999887776778899999999999988877654 35667888887443
No 175
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=64.84 E-value=23 Score=29.11 Aligned_cols=51 Identities=12% Similarity=0.174 Sum_probs=38.9
Q ss_pred eeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCc--eeeecCCCcEEEeC
Q 039441 206 LEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERR--ESFNMEHGDVISVP 256 (539)
Q Consensus 206 l~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~--~~~~v~~GDV~~iP 256 (539)
..+.++..+.-.--.++.+.||++|...+...+.++. ....+.+||++-..
T Consensus 20 ~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 20 VRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGEL 72 (120)
T ss_pred EEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechh
Confidence 4458888877666777889999999999888765544 36678899987554
No 176
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=63.28 E-value=56 Score=31.09 Aligned_cols=76 Identities=14% Similarity=0.081 Sum_probs=50.2
Q ss_pred eEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEe
Q 039441 359 GVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFII 438 (539)
Q Consensus 359 sva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vV 438 (539)
.+....+.+|.++... .-.++.+.+|++|..++....++|. ...-..+.+||+|-.
T Consensus 19 ~~~~~~~~kg~~l~~~-g~~~~~~y~V~~G~v~~~~~~~~g~-----------------------~~~~~~~~~g~~~g~ 74 (211)
T PRK11753 19 HCHIHKYPAKSTLIHA-GEKAETLYYIVKGSVAVLIKDEEGK-----------------------EMILSYLNQGDFIGE 74 (211)
T ss_pred hCeEEEeCCCCEEEeC-CCCCCeEEEEEeCEEEEEEECCCCC-----------------------EEEEEEcCCCCEEee
Confidence 3456788888877543 3357889999999999988887763 245567899999844
Q ss_pred CC----C--CeEEEEcCCCCcEEEEEEe
Q 039441 439 PP----G--HPIALVASPNEKLLTVGFS 460 (539)
Q Consensus 439 Pa----G--~~h~i~n~gne~l~~v~F~ 460 (539)
.. . ++..+.+..+ ..++.|.
T Consensus 75 ~~~~~~~~~~~~~~~a~~~--~~v~~i~ 100 (211)
T PRK11753 75 LGLFEEGQERSAWVRAKTA--CEVAEIS 100 (211)
T ss_pred hhhccCCCCceEEEEEcCc--EEEEEEc
Confidence 32 2 3344555433 4554443
No 177
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=61.66 E-value=23 Score=30.57 Aligned_cols=65 Identities=20% Similarity=0.334 Sum_probs=37.3
Q ss_pred EcCCceecceecCCCCEEEEEEe-ceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCe
Q 039441 365 INQGGMMVPHYNSKATTIVLVVE-GRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHP 443 (539)
Q Consensus 365 L~pGgm~~PHwhpnA~ei~yV~~-G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~ 443 (539)
-+.+|+++|--.........|+. |.|+.. .++ ......|+.||.+++|.+..
T Consensus 19 ~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~---~~g------------------------~~~~~~vk~GD~Vl~~~~~g 71 (93)
T PF00166_consen 19 KTASGIILPESAKEKPNQGKVVAVGPGRYN---ENG------------------------EEVPMDVKVGDKVLFPKYAG 71 (93)
T ss_dssp TCTTSCCE-CCSSSSEEEEEEEEE-SEEET---TTS------------------------SEEETSS-TTSEEEEETTTS
T ss_pred eecceEEeccccccccceeEEEEcCCcccc---CCC------------------------cEeeeeeeeccEEeccccCc
Confidence 45789999933222334444444 665543 332 24557899999999999987
Q ss_pred EEEEcCCCCcEEEE
Q 039441 444 IALVASPNEKLLTV 457 (539)
Q Consensus 444 h~i~n~gne~l~~v 457 (539)
.-+... ++.+.++
T Consensus 72 ~~v~~~-~~~~~~~ 84 (93)
T PF00166_consen 72 TEVKFD-GEKYLIV 84 (93)
T ss_dssp EEEEET-TEEEEEE
T ss_pred eEEEEC-CEEEEEE
Confidence 766553 4444443
No 178
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=60.82 E-value=23 Score=34.76 Aligned_cols=49 Identities=8% Similarity=0.030 Sum_probs=40.6
Q ss_pred eeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCce--eeecCCCcEEEe
Q 039441 207 EANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRE--SFNMEHGDVISV 255 (539)
Q Consensus 207 ~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~--~~~v~~GDV~~i 255 (539)
+.+++.++...--..+.++||++|.+.+..++.++++ ..-+.+||++-.
T Consensus 35 ~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~ 85 (226)
T PRK10402 35 HFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGE 85 (226)
T ss_pred eeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEe
Confidence 3488888888888889999999999999999887665 456789998754
No 179
>COG1482 ManA Phosphomannose isomerase [Carbohydrate transport and metabolism]
Probab=58.97 E-value=10 Score=40.05 Aligned_cols=22 Identities=36% Similarity=0.788 Sum_probs=19.6
Q ss_pred eeeCCCcEEEeCCCCeEEEEcC
Q 039441 428 ANLSPGVVFIIPPGHPIALVAS 449 (539)
Q Consensus 428 ~~L~~GDV~vVPaG~~h~i~n~ 449 (539)
..|++||+|+||+|.+|++...
T Consensus 160 v~lkpGe~~fl~Agt~HA~~~G 181 (312)
T COG1482 160 VKLKPGEAFFLPAGTPHAYLKG 181 (312)
T ss_pred EecCCCCEEEecCCCceeeccc
Confidence 5799999999999999998653
No 180
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=58.36 E-value=26 Score=30.23 Aligned_cols=62 Identities=11% Similarity=0.219 Sum_probs=34.3
Q ss_pred CCeeecccc-cCCCcEEEE-EeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEE
Q 039441 210 PSTLVVPHH-SDAETILVL-LKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVA 275 (539)
Q Consensus 210 P~~l~lPh~-~dA~~~~yV-~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv 275 (539)
-+|++||.= ...+..+.| .=|.|... ..|......|+.||.+.+|......+..+| +++.++
T Consensus 21 ~~GiiLp~~~~~~~~~G~VvaVG~G~~~--~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~--~~~~~~ 84 (93)
T PF00166_consen 21 ASGIILPESAKEKPNQGKVVAVGPGRYN--ENGEEVPMDVKVGDKVLFPKYAGTEVKFDG--EKYLIV 84 (93)
T ss_dssp TTSCCE-CCSSSSEEEEEEEEE-SEEET--TTSSEEETSS-TTSEEEEETTTSEEEEETT--EEEEEE
T ss_pred cceEEeccccccccceeEEEEcCCcccc--CCCcEeeeeeeeccEEeccccCceEEEECC--EEEEEE
Confidence 467888831 122223322 22444333 222334578999999999999988888854 555433
No 181
>PF09313 DUF1971: Domain of unknown function (DUF1971); InterPro: IPR015392 This uncharacterised domain is predominantly found in bacterial Tellurite resistance proteins. ; PDB: 3BB6_C 3M70_A 3DL3_I.
Probab=58.26 E-value=74 Score=27.14 Aligned_cols=66 Identities=20% Similarity=0.148 Sum_probs=44.3
Q ss_pred CCceecceecCCCCEEE--EEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeE
Q 039441 367 QGGMMVPHYNSKATTIV--LVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPI 444 (539)
Q Consensus 367 pGgm~~PHwhpnA~ei~--yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h 444 (539)
|-+++..| |+++..|. -|++|+..+...++++.. -...--+.+|+..+||+...|
T Consensus 12 P~~l~~~H-~TK~GtWg~l~Vl~G~L~f~~~~~~~~~----------------------~~~~~~~~~~~~~~i~Pq~wH 68 (82)
T PF09313_consen 12 PAALLERH-NTKAGTWGKLRVLEGELKFYGLDEEGEE----------------------PEEEVFIPAGQPPVIEPQQWH 68 (82)
T ss_dssp -GGGGSSB-CCSTTEEEEEEEEESEEEEEEESSTT-S----------------------ESEEEEEETTEEEEE-TT-EE
T ss_pred cHHHHhhc-CCCCCeEEEEEEEeeEEEEEEECCCCCc----------------------eeEEEEeCCCCCceeCCCceE
Confidence 34555666 56887764 689999999999997521 011234799999999999999
Q ss_pred EEEcCCCCcEEE
Q 039441 445 ALVASPNEKLLT 456 (539)
Q Consensus 445 ~i~n~gne~l~~ 456 (539)
.+...++ ++.|
T Consensus 69 ~V~p~s~-D~~f 79 (82)
T PF09313_consen 69 RVEPLSD-DLRF 79 (82)
T ss_dssp EEEESST-T-EE
T ss_pred EEEECCC-CEEE
Confidence 9998754 3443
No 182
>PHA02984 hypothetical protein; Provisional
Probab=57.88 E-value=35 Score=35.35 Aligned_cols=62 Identities=19% Similarity=0.345 Sum_probs=47.7
Q ss_pred CCCcEEE--EEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEEEeccCCC
Q 039441 220 DAETILV--LLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAKLLQPVNT 283 (539)
Q Consensus 220 dA~~~~y--V~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~l~d~~n~ 283 (539)
.+.+-+| ++.|++.|-.-..+..-+.+|.+||.+.+--++-|.+.-.+.+ |+++.+--+++.
T Consensus 90 esnEy~FvlCl~G~~~I~~~~~~~~is~~I~kGeaf~md~~t~h~i~T~~kn--l~L~Vi~y~v~~ 153 (286)
T PHA02984 90 ESNEYMFVLCLNGKTSIECFNKGSKITNTIKKGEAFTLNLKTKYVTTTKDKN--LHLAVITYTSNC 153 (286)
T ss_pred eeccEEEEEEcCCeEEEEEecCCceeeeEEecCceEEEEccceEEEEeCCCc--eEEEEEEEEecc
Confidence 3444444 6799999999999989999999999999999999999987644 444444444443
No 183
>PF06172 Cupin_5: Cupin superfamily (DUF985); InterPro: IPR009327 This is a family of uncharacterised proteins found in bacteria and eukaryotes.; PDB: 1ZNP_G 1XE8_B 1XE7_A 3M3I_F 3LOI_A 3LZZ_B 1YUD_D.
Probab=56.32 E-value=70 Score=29.90 Aligned_cols=60 Identities=20% Similarity=0.278 Sum_probs=43.9
Q ss_pred eCCCeeecccccCCCcEEEEEec-eEEEEEEeCCCce-e----eecCCCc--EEEeCCCCeEEEEecC
Q 039441 208 ANPSTLVVPHHSDAETILVLLKG-KGVITLVSHERRE-S----FNMEHGD--VISVPAGTTYYLSNQD 267 (539)
Q Consensus 208 l~P~~l~lPh~~dA~~~~yV~~G-~g~i~~v~pg~~~-~----~~v~~GD--V~~iPaG~~h~i~N~g 267 (539)
|.++.+---|-.+++++.|-..| ...+-++.|++.. + .++..|. .++||+|+.+-..-.+
T Consensus 48 L~~~~~S~~Hrv~sdEiw~~~~G~pl~l~~i~~dg~~~~~~LG~d~~~g~~~q~vVp~G~W~aa~l~~ 115 (139)
T PF06172_consen 48 LTPGEFSAWHRVDSDEIWHFHAGDPLELHLIDPDGSYETVVLGPDLAAGERPQVVVPAGTWQAAELEP 115 (139)
T ss_dssp EETTBEEEEEEESSEEEEEEEEES-EEEEEECTTSTEEEEEESSTTCTTEBSEEEE-TTSEEEEEECE
T ss_pred EcCCCCCccEEcCCCEEEEEEcCCCEEEEEEcCCCCeEEEEECCCCCCCceEEEEECCCEEEEccccC
Confidence 47788888888899999999998 5788888888653 3 2445564 5899999988774333
No 184
>PF07847 DUF1637: Protein of unknown function (DUF1637); InterPro: IPR012864 This entry represents cysteamine dioxygenase, which is a non-heme iron protein that is involved in the biosynthesis of taurine. Requires catalytic amounts of a cofactor-like compound, such as sulphur, sulphide, selenium or methylene blue for maximal activity. 3-Aminopropanethiol (homocysteamine) and 2-mercaptoethanol can also act as substrates, but glutathione, cysteine, and cysteine ethyl- and methyl esters are not good substrates [, ]. ; GO: 0047800 cysteamine dioxygenase activity, 0055114 oxidation-reduction process
Probab=54.79 E-value=11 Score=37.38 Aligned_cols=48 Identities=13% Similarity=0.100 Sum_probs=41.8
Q ss_pred ccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCC
Q 039441 351 QQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPL 398 (539)
Q Consensus 351 P~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~ 398 (539)
++..+-.++|....|.+|+.+.+|=||.-+-|.-|+.|+..|.-.+--
T Consensus 37 ~iyE~~~fsi~iF~lp~g~~IPLHDHP~M~v~sKvL~Gs~~v~Syd~~ 84 (200)
T PF07847_consen 37 HIYEDEDFSIGIFCLPPGAVIPLHDHPGMTVLSKVLYGSLHVKSYDWV 84 (200)
T ss_pred EEEECCCcEEEEEEeCCCCEeCCCCCCchHhhHhhEeeeEEEEEcccc
Confidence 345555789999999999999999999999999999999999887643
No 185
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=54.66 E-value=72 Score=28.48 Aligned_cols=65 Identities=20% Similarity=0.143 Sum_probs=43.6
Q ss_pred CCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCC--CeEEEEecCCCceEEEEEE
Q 039441 210 PSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAG--TTYYLSNQDNVDRLHVAKL 277 (539)
Q Consensus 210 P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG--~~h~i~N~g~~e~L~iv~l 277 (539)
+.+|-...|.+-+-|.||++|...- -+.-+ ....|++|||-.+-|| +.|.=.|.+++.+++++-|
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H--~Ds~G-~~~~l~~G~vq~m~AG~Gi~H~E~~~~~~~~~~~lQl 105 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRH--RDSLG-NRGVLRAGDVQWMTAGSGIVHSERNASDGGPLHGLQL 105 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEE--EETTS-EEEEEETTEEEEEE-TTTEEEEEEE-TSSS-EEEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEE--ECCCC-CeeEeCCCeEEEEeCCCCceEEEecCCCCCeEEEEEE
Confidence 4566544499999999999986532 23222 3456999999998886 5677778876677876654
No 186
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=54.64 E-value=45 Score=34.22 Aligned_cols=68 Identities=10% Similarity=0.088 Sum_probs=47.6
Q ss_pred CCCeeecccccCCC--cEEEEEeceEEEEEEeCCCce--eeecCC-CcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441 209 NPSTLVVPHHSDAE--TILVLLKGKGVITLVSHERRE--SFNMEH-GDVISVPAGTTYYLSNQDNVDRLHVAK 276 (539)
Q Consensus 209 ~P~~l~lPh~~dA~--~~~yV~~G~g~i~~v~pg~~~--~~~v~~-GDV~~iPaG~~h~i~N~g~~e~L~iv~ 276 (539)
=|.+|+.||-+.+. +.+-|++|+-.+...+++... ...|.+ ++...||+++-|++.-..++..+.+-+
T Consensus 19 ~p~~~~~~H~t~~g~~~~~~vl~G~l~~~~~de~g~~~~~~~l~~~~~~~~i~p~~wh~v~~~s~d~~~~l~f 91 (287)
T PRK12335 19 LPEMFQEKHNTKEGTWAKLTVLKGELKFYELTEDGEELSEHIFDAENQPPFIEPQAWHRIEAASDDLECQLSF 91 (287)
T ss_pred chHHHHhccCCCCCcceEEEEEeeeEEEEEECCCCCeeeEEEEecCCCCceeCCcceEEEEEcCCCcEEEEEE
Confidence 69999999955444 456699999888888776543 344444 456579999999999875445444333
No 187
>PRK11396 hypothetical protein; Provisional
Probab=52.78 E-value=1.6e+02 Score=29.21 Aligned_cols=84 Identities=15% Similarity=0.203 Sum_probs=61.9
Q ss_pred ccCCCceEEEeCCccccc-ccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHH
Q 039441 335 YNNNFGRFFEATPKDYQQ-LQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEE 413 (539)
Q Consensus 335 ~sn~~G~i~~~~~~~fP~-L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~ 413 (539)
++|.+|...++- -+|. ..+.+..++.++|...|-+..+ |.-..++.|++|.|..=.+..
T Consensus 14 WkNGgG~TrEI~--~~P~~~~dF~WRiSiA~I~~~GpFS~F--pGidR~i~lL~G~g~~L~~~~---------------- 73 (191)
T PRK11396 14 WRNAAGETREIC--TFPPAKRDFYWRASIASIAANGEFSLF--PGMERIVTLLEGGEMFLESAD---------------- 73 (191)
T ss_pred ccCCCeEEEEEE--EcCCCCCCceEEEEEEEecCCCCCCCC--CCccEEEEEEECCCEEEeeCC----------------
Confidence 678889877774 3343 3577888999999999988775 789999999999654322222
Q ss_pred HHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcC
Q 039441 414 EEEEESSRELQKISANLSPGVVFIIPPGHPIALVAS 449 (539)
Q Consensus 414 ~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~ 449 (539)
.....|++++.|.++-..++.-...
T Consensus 74 -----------~~~~~l~~~~p~~F~Gd~~v~a~L~ 98 (191)
T PRK11396 74 -----------RFNHTLKPLQPFAFAADQVVKAKLT 98 (191)
T ss_pred -----------ccceecCCCCCeEeCCCCeeEEEEC
Confidence 1223567899999999998886655
No 188
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]. The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....
Probab=52.38 E-value=39 Score=26.88 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=36.4
Q ss_pred EEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEe
Q 039441 364 EINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFII 438 (539)
Q Consensus 364 ~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vV 438 (539)
.+.+|..+...-. ..+.+.||++|...+.....++. ......+.+||++-.
T Consensus 3 ~~~~g~~i~~~g~-~~~~~~~i~~G~v~~~~~~~~~~-----------------------~~~~~~~~~g~~~g~ 53 (91)
T PF00027_consen 3 TYKKGEVIYRQGD-PCDHIYIILSGEVKVSSINEDGK-----------------------EQIIFFLGPGDIFGE 53 (91)
T ss_dssp EESTTEEEEETTS-BESEEEEEEESEEEEEEETTTSE-----------------------EEEEEEEETTEEESG
T ss_pred EECCCCEEEeCCC-cCCEEEEEEECceEEEeceecce-----------------------eeeecceeeeccccc
Confidence 4556665544433 47899999999999999998762 234577889988743
No 189
>COG1741 Pirin-related protein [General function prediction only]
Probab=52.21 E-value=30 Score=35.98 Aligned_cols=73 Identities=21% Similarity=0.276 Sum_probs=52.1
Q ss_pred EEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCC
Q 039441 362 YVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPG 441 (539)
Q Consensus 362 ~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG 441 (539)
-..+.||.-+.||=|.+=.-|.||++|+.+-. ++-|. + ..+++|||-.+=||
T Consensus 48 ~~~~~pG~~f~pHPHrg~etvTyvl~G~i~Hr--DS~Gn------------------------~--~~i~pGdvqwMTAG 99 (276)
T COG1741 48 PDVLAPGRGFPPHPHRGLETVTYVLDGEIEHR--DSLGN------------------------K--GVIRPGDVQWMTAG 99 (276)
T ss_pred cccccCCCcCCCCCCCCcEEEEEEEccEEEEe--ecCCc------------------------e--eeecccceeEEcCC
Confidence 45688999999999999999999999996543 33331 1 45899999999998
Q ss_pred CeEE--EEcC--CCCcEEEEEEeec
Q 039441 442 HPIA--LVAS--PNEKLLTVGFSLN 462 (539)
Q Consensus 442 ~~h~--i~n~--gne~l~~v~F~~n 462 (539)
...+ -+|. .+.+|..+=+-++
T Consensus 100 ~GI~HSE~~~~~~~~~l~~~QlWv~ 124 (276)
T COG1741 100 SGIVHSEMNPPSTGKPLHGLQLWVN 124 (276)
T ss_pred CceeecccCCccCCCccceeeeecC
Confidence 7655 4553 3445766644434
No 190
>PHA02951 Hypothetical protein; Provisional
Probab=51.61 E-value=41 Score=35.45 Aligned_cols=70 Identities=13% Similarity=0.199 Sum_probs=49.7
Q ss_pred CCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEE
Q 039441 367 QGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIAL 446 (539)
Q Consensus 367 pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i 446 (539)
.|.|..|+. .+-..+.+++-+|..++.-|++ ..+...+.+||++|+|+...+.+
T Consensus 114 ~~~~~~~~s--~gFvAtICIKNeGiSgl~Vp~t------------------------~~LK~ni~~GD~IVsRs~rGv~f 167 (337)
T PHA02951 114 KGALYLGHS--AGFTATICLKNEGISGLYIPGT------------------------SVLKINICQGDTIVSRSSRGVQF 167 (337)
T ss_pred ccccccCCc--cceEEEEEEcCCCeeEEEeCCC------------------------chheeeeccCcEEEEecccccee
Confidence 445555553 5777788899999999999987 35677899999999999988887
Q ss_pred EcCCCCcEEEEEEeec
Q 039441 447 VASPNEKLLTVGFSLN 462 (539)
Q Consensus 447 ~n~gne~l~~v~F~~n 462 (539)
.-.=.....++.+...
T Consensus 168 LPQIGGeaiYLIVsL~ 183 (337)
T PHA02951 168 LPQIGGEAIYLVVSLC 183 (337)
T ss_pred ccccCceeEEEEEEEe
Confidence 6531223454443333
No 191
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=50.73 E-value=27 Score=37.80 Aligned_cols=62 Identities=26% Similarity=0.361 Sum_probs=42.2
Q ss_pred EEeeeCCCeeecccccCCCcEEEEEeceEEEEEEe-----CC--Cce-------------eeecCCCcEEEeCCCCeEEE
Q 039441 204 AILEANPSTLVVPHHSDAETILVLLKGKGVITLVS-----HE--RRE-------------SFNMEHGDVISVPAGTTYYL 263 (539)
Q Consensus 204 ~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~-----pg--~~~-------------~~~v~~GDV~~iPaG~~h~i 263 (539)
.|--+.|+|-+=|||-.-+ +|++||.|.=.+=. +. ++. ..-+.+|||.|||+|.+||=
T Consensus 122 MIS~a~~GGgvg~H~D~YD--VfliQg~G~RRW~v~~~~~~~~~~~~~d~~~~~~f~~~~d~vlepGDiLYiPp~~~H~g 199 (383)
T COG2850 122 MISFAAPGGGVGPHFDQYD--VFLIQGQGRRRWRVGKKCNMSTLCPHPDLLILAPFEPDIDEVLEPGDILYIPPGFPHYG 199 (383)
T ss_pred EEEEecCCCccCccccchh--eeEEeecccceeecCCcccccCcCCCcchhhcCCCCchhhhhcCCCceeecCCCCCcCC
Confidence 3335688888889986666 56666665433321 11 220 13589999999999999998
Q ss_pred EecC
Q 039441 264 SNQD 267 (539)
Q Consensus 264 ~N~g 267 (539)
+..+
T Consensus 200 vae~ 203 (383)
T COG2850 200 VAED 203 (383)
T ss_pred cccc
Confidence 8875
No 192
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=50.70 E-value=51 Score=32.68 Aligned_cols=70 Identities=10% Similarity=0.078 Sum_probs=45.0
Q ss_pred eCCCeeecccccCC---CcEEEEE--eceEEEEEEeCCCc------------------e-eeecCCCcEEEeCCCCeEEE
Q 039441 208 ANPSTLVVPHHSDA---ETILVLL--KGKGVITLVSHERR------------------E-SFNMEHGDVISVPAGTTYYL 263 (539)
Q Consensus 208 l~P~~l~lPh~~dA---~~~~yV~--~G~g~i~~v~pg~~------------------~-~~~v~~GDV~~iPaG~~h~i 263 (539)
+.++++.-+|+|.. +.++||. .|.|-+.+.+|... . ...-++||++.||+=.-|..
T Consensus 103 ~~~Gg~h~~H~Hp~~~lSgvyYl~~p~~~g~~~f~~p~~~~~~~~~~~~~~~~~~~~~~~~v~P~~G~lvlFPS~L~H~v 182 (201)
T TIGR02466 103 LPQGGTHSPHLHPGSVISGTYYVQTPENCGAIKFEDPRLDDMMAAPMRIPNAKRAVQRFVYVPPQEGRVLLFESWLRHEV 182 (201)
T ss_pred cCCCCccCceECCCceEEEEEEEeCCCCCCceeEecCcchhhhccccccCccccccCccEEECCCCCeEEEECCCCceec
Confidence 47888888885544 4567776 44456666555421 0 13458999999999999998
Q ss_pred E-ecCCCceEEEEEEec
Q 039441 264 S-NQDNVDRLHVAKLLQ 279 (539)
Q Consensus 264 ~-N~g~~e~L~iv~l~d 279 (539)
. |.++.+ +|-..|+
T Consensus 183 ~p~~~~~~--RISiSFN 197 (201)
T TIGR02466 183 PPNESEEE--RISVSFN 197 (201)
T ss_pred CCCCCCCC--EEEEEEe
Confidence 8 555334 4444443
No 193
>PF04962 KduI: KduI/IolB family; InterPro: IPR021120 The KduI/IolB family of enzymes includes 5-keto 4-deoxyuronate isomerase (KduI) and 5-deoxy-glucuronate isomerase (IolB). KduI is involved in pectin degradation by free-living soil bacteria that use pectin as a carbon source, breaking it down to 2-keto-3-deoxygluconate, which can ultimately be converted to pyruvate. KduI catalyses the fourth step in pectin degradation, namely the interconversion of 5-keto-4-deoxyuronate and 2,5-diketo-3-dexoygluconate []. KduI has a TIM-barrel fold []. IolB is one of several bacterial proteins encoded by the inositol operon (iolABCDEFGHIJ) in Bacillus subtilis that are involved in myo-inositol catabolism. The enzyme is responsible for isomerization of 5-deoxy-D-glucuronic acid by IolB to produce 2-deoxy-5-keto-D-gluconic acid []. IolBs possess a cupin-like structure.; GO: 0016861 intramolecular oxidoreductase activity, interconverting aldoses and ketoses, 0008152 metabolic process; PDB: 1YWK_B 2QJV_B 1X8M_A 1XRU_A.
Probab=50.55 E-value=1.2e+02 Score=31.28 Aligned_cols=93 Identities=14% Similarity=0.201 Sum_probs=49.7
Q ss_pred eEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEE-EEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhh
Q 039441 341 RFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTI-VLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEES 419 (539)
Q Consensus 341 ~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei-~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~ 419 (539)
.++.+++... .+.- +.+..+.|.+|.-..-- ....|+ ++++.|.+.|++-...... - +. +
T Consensus 13 ~~~~i~~~~~-g~~~--~~~~~l~L~~g~~~~~~--~~~~E~~vv~l~G~~~v~~~g~~~~~--l----~~--------R 73 (261)
T PF04962_consen 13 LVYSITPENA-GWMY--MGFGVLRLEAGESLEFE--LERRELGVVNLGGKATVTVDGEEFYE--L----GG--------R 73 (261)
T ss_dssp -EEECTCCCC-CCCC--BECCCEEEECCHCCCCC--CCSEEEEEEEESSSEEEEETTEEEEE--E-----T--------T
T ss_pred EEEEECCCcc-Cccc--cceEEEEecCCCEEecc--CCCcEEEEEEeCCEEEEEeCCceEEE--e----cc--------c
Confidence 4677776544 3333 44556888888776544 344444 5567899999882210000 0 00 0
Q ss_pred hcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEEe
Q 039441 420 SRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGFS 460 (539)
Q Consensus 420 ~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F~ 460 (539)
..+| . ...|+++||.|....+.+..+ ++|....
T Consensus 74 ---~~vF--~-~~~d~lYvp~g~~~~i~a~~~--ae~~~~s 106 (261)
T PF04962_consen 74 ---ESVF--D-GPPDALYVPRGTKVVIFASTD--AEFAVCS 106 (261)
T ss_dssp ---SSGG--G-S--EEEEE-TT--EEEEESST--EEEEEEE
T ss_pred ---cccc--C-CCCcEEEeCCCCeEEEEEcCC--CEEEEEc
Confidence 0122 2 556999999999999999654 5555433
No 194
>PF02678 Pirin: Pirin; InterPro: IPR003829 This entry represents N-terminal domain of Pirin proteins from both eukaryotes and prokaryotes. The function of Pirin is unknown but the gene coding for this protein is known to be expressed in all tissues in the human body although it is expressed most strongly in the liver and heart. Pirin is known to be a nuclear protein, exclusively localised within the nucleoplasma and predominantly concentrated within dot-like subnuclear structures []. Pirin is composed of two structurally similar domains arranged face to face. The N-terminal domain additionally features four beta-strands, and the C-terminal domain also includes four additional -strands and a short alpha-helix. Although the two domains are similar, the C-terminal domain of Pirin differs from the N-terminal domain as it does not contain a metal binding site and its sequence does not contain the conserved metal-coordinating residues []. Pirin is confirmed to be a member of the cupin superfamily on the basis of primary sequence and structural similarity. The presence of a metal binding site in the N-terminal beta-barrel of Pirin, may be significant in its role in regulating NFI DNA replication and NF-kappaB transcription factor activity []. Pirin structure has been found to closely resemble members of the cupin superfamily. Pirin contains the two characteristic sequences of the cupin superfamily, namely PG-(X)5-HXH-(X)4-E-(X)6-G and G-(X)5-PXG-(X)2-H-(X)3-N separated by a variable stretch of 15-50 amino acids. These motifs are best conserved in the N-terminal where the conserved histidine and glutamic acid residues correspond to the metal-coordinating residues. The C-terminal domain motifs lack the metal binding residues normally associated with the cupin fold []. Pirin was identified to be a metal-binding protein [], and was found that the metal-binding residues of Pirins are highly conserved across mammals, plants, fungi, and prokaryotic organisms. Pirin acts as a cofactor for the transcription factor NFI, the regulatory mechanism of which is generally believed to require the assistance of a metal ion []. Structural data supports the hypothesis that the bound iron of Pirin may participate in this transcriptional regulation by enhancing and stabilising the formation of the p50,Bcl3,DNA complex []. Metals have been implicated directly or indirectly in the NF-kappaB family of transcription factors that control expression of a number of early response genes associated with inflammatory responses, cell growth, cell cycle progression, and neoplastic transformation []. However, most metal-dependent transcription factors are DNA-binding proteins that bind to specific sequences when the metal binds to the protein. Pirin, on the other hand, appears to function differently and bind to the transcription factor DNA complex [].; PDB: 2VEC_A 1J1L_A 3ACL_A 2P17_A 1TQ5_A.
Probab=49.51 E-value=81 Score=28.16 Aligned_cols=62 Identities=21% Similarity=0.205 Sum_probs=42.3
Q ss_pred CceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEE--
Q 039441 368 GGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIA-- 445 (539)
Q Consensus 368 Ggm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~-- 445 (539)
++-+.||=|.+-.-|.||++|...- .++.| -...|++|||-++=||-.++
T Consensus 39 ~~gf~~HPH~g~eivTyv~~G~~~H--~Ds~G--------------------------~~~~l~~G~vq~m~AG~Gi~H~ 90 (107)
T PF02678_consen 39 GAGFPMHPHRGFEIVTYVLEGELRH--RDSLG--------------------------NRGVLRAGDVQWMTAGSGIVHS 90 (107)
T ss_dssp TTEEEEEEECSEEEEEEEEESEEEE--EETTS--------------------------EEEEEETTEEEEEE-TTTEEEE
T ss_pred CCCCCCcCCCCceEEEEEecCEEEE--ECCCC--------------------------CeeEeCCCeEEEEeCCCCceEE
Confidence 5566899998999999999997644 35544 12569999999998876544
Q ss_pred EEcCCC-CcEEEE
Q 039441 446 LVASPN-EKLLTV 457 (539)
Q Consensus 446 i~n~gn-e~l~~v 457 (539)
..|..+ .++.++
T Consensus 91 E~~~~~~~~~~~l 103 (107)
T PF02678_consen 91 ERNASDGGPLHGL 103 (107)
T ss_dssp EEE-TSSS-EEEE
T ss_pred EecCCCCCeEEEE
Confidence 556544 556655
No 195
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional
Probab=49.05 E-value=90 Score=30.52 Aligned_cols=75 Identities=7% Similarity=0.011 Sum_probs=49.5
Q ss_pred EEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeC
Q 039441 360 VTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIP 439 (539)
Q Consensus 360 va~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVP 439 (539)
+....+.+|.++...= -....+.+|++|.+++..+..+|. ..+..-+.+||+|-..
T Consensus 31 ~~~~~~~kge~l~~~G-~~~~~~y~V~~G~v~v~~~~~~G~-----------------------e~~~~~~~~g~~~G~~ 86 (226)
T PRK10402 31 TELFHFLAREYIVQEG-QQPSYLFYLTRGRAKLYATLANGK-----------------------VSLIDFFAAPCFIGEI 86 (226)
T ss_pred hhheeeCCCCEEEcCC-CCCceEEEEEeCEEEEEEECCCCC-----------------------EeeeeecCCCCeEEee
Confidence 3445677887764432 256789999999999999998763 2445668999988754
Q ss_pred C-----CCeEEEEcCCCCcEEEEEEe
Q 039441 440 P-----GHPIALVASPNEKLLTVGFS 460 (539)
Q Consensus 440 a-----G~~h~i~n~gne~l~~v~F~ 460 (539)
. .+++.+.+..+ ..++.|.
T Consensus 87 ~~~~~~~~~~~~~A~~~--~~i~~i~ 110 (226)
T PRK10402 87 ELIDKDHETKAVQAIEE--CWCLALP 110 (226)
T ss_pred hhhcCCCCCccEEEecc--EEEEEEE
Confidence 2 24455555533 4444443
No 196
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=48.76 E-value=23 Score=37.54 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=25.6
Q ss_pred cceeeEEeeeCCCcEEEeCCCCeEEEEcC
Q 039441 421 RELQKISANLSPGVVFIIPPGHPIALVAS 449 (539)
Q Consensus 421 ~~y~~~~~~L~~GDV~vVPaG~~h~i~n~ 449 (539)
.+|+-+.-...+|.+++||.|+.|.++|-
T Consensus 258 ~E~kPIEc~q~pGEt~fVP~GWWHvVlNl 286 (407)
T KOG2130|consen 258 DEYKPIECLQKPGETMFVPSGWWHVVLNL 286 (407)
T ss_pred cccCCceeeecCCceEEecCCeEEEEecc
Confidence 45677777889999999999999999997
No 197
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of
Probab=48.28 E-value=1.4e+02 Score=24.20 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=40.0
Q ss_pred EEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeC
Q 039441 360 VTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIP 439 (539)
Q Consensus 360 va~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVP 439 (539)
+....+.+|.++... +...+.+.||++|...+....++|. ......+.+|+++-.+
T Consensus 17 ~~~~~~~~g~~l~~~-~~~~~~~~~i~~G~v~~~~~~~~g~-----------------------~~~~~~~~~g~~~g~~ 72 (115)
T cd00038 17 LEERRFPAGEVIIRQ-GDPADSLYIVLSGSVEVYKLDEDGR-----------------------EQIVGFLGPGDLFGEL 72 (115)
T ss_pred ceeeeeCCCCEEEcC-CCCCCeEEEEEeCEEEEEEECCCCc-----------------------EEEEEecCCccCcChH
Confidence 456678888876322 2246789999999999988887652 2455678899988554
No 198
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=48.00 E-value=28 Score=37.66 Aligned_cols=70 Identities=24% Similarity=0.337 Sum_probs=59.6
Q ss_pred CcceeeEEEeeeCCCeeecccc---cCCCcEEEEEeceEEEEEEeCCCce--------------------------eeec
Q 039441 197 GIDNYRLAILEANPSTLVVPHH---SDAETILVLLKGKGVITLVSHERRE--------------------------SFNM 247 (539)
Q Consensus 197 gv~~~Rl~il~l~P~~l~lPh~---~dA~~~~yV~~G~g~i~~v~pg~~~--------------------------~~~v 247 (539)
+..+||+++ |-|.+--.|-| ..+..|.-++-|+-+==++.|+... +-.=
T Consensus 195 ~~ddyrFvy--~Gp~gSwtp~HaDVf~s~swS~nicG~KrWl~~pP~qe~~l~dr~gnlp~~~~~~~ld~~~~~~lei~Q 272 (427)
T KOG2131|consen 195 ESDDYRFVY--AGPAGSWTPFHADVFHSPSWSVNICGRKRWLLYPPEQEQTLADRYGNLPLPSWITKLDLFRGPLLEIFQ 272 (427)
T ss_pred CCCceeEEE--eccCCCCCccchhhhcCCcceeeeecceeEEEeChHHhhhhhhhccCcCCccccccccccccchhhhhc
Confidence 678999988 78889899999 6789999999999888888888621 1134
Q ss_pred CCCcEEEeCCCCeEEEEecCC
Q 039441 248 EHGDVISVPAGTTYYLSNQDN 268 (539)
Q Consensus 248 ~~GDV~~iPaG~~h~i~N~g~ 268 (539)
++|.+|++|+|.-|=++|.++
T Consensus 273 epge~VFvPsGW~hQV~NL~d 293 (427)
T KOG2131|consen 273 EPGETVFVPSGWHHQVLNLGD 293 (427)
T ss_pred cCCceeeccCccccccccccc
Confidence 789999999999999999985
No 199
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=46.08 E-value=81 Score=27.49 Aligned_cols=32 Identities=9% Similarity=0.137 Sum_probs=21.9
Q ss_pred eEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEE
Q 039441 425 KISANLSPGVVFIIPPGHPIALVASPNEKLLTV 457 (539)
Q Consensus 425 ~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v 457 (539)
.....|+.||.+++|.....-+.. +++...++
T Consensus 54 ~~~~~vk~GD~Vlf~~~~g~ev~~-~~~~y~iv 85 (95)
T PRK00364 54 RVPLDVKVGDKVLFGKYAGTEVKI-DGEEYLIL 85 (95)
T ss_pred EeecccCCCCEEEEcCCCCeEEEE-CCEEEEEE
Confidence 455679999999999876665443 44455444
No 200
>COG3718 IolB Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism]
Probab=44.62 E-value=1.4e+02 Score=30.63 Aligned_cols=92 Identities=13% Similarity=0.239 Sum_probs=61.9
Q ss_pred CCCceEEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHH
Q 039441 337 NNFGRFFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEE 416 (539)
Q Consensus 337 n~~G~i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~ 416 (539)
...|.+..+++.+ +.+.. +++..+.|.+|....--- .+-.-+++++.|++.|..-...-.. -|.
T Consensus 11 ~~~g~v~~vtp~s-agw~Y--VGF~~~~L~~Ges~~~~~-~~~E~clV~v~Gk~~vs~~g~~f~~------iG~------ 74 (270)
T COG3718 11 AGVGLVQDVTPES-AGWEY--VGFRLLRLAAGESATEET-GDRERCLVLVTGKATVSAHGSTFGE------IGT------ 74 (270)
T ss_pred CCCcceEEecCCC-CCcee--EEEEEEEccCCCcccccC-CCceEEEEEEeeeEEEeeccchHhh------ccc------
Confidence 4467888888643 34444 677788999999887654 3556677788999988654432100 011
Q ss_pred HhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCC
Q 039441 417 EESSRELQKISANLSPGVVFIIPPGHPIALVASPN 451 (539)
Q Consensus 417 e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gn 451 (539)
+.--++=++=|.++||.|-.+.+.+..+
T Consensus 75 -------R~SvFe~~p~~~vYvp~g~~~~vtA~t~ 102 (270)
T COG3718 75 -------RMSVFERKPPDSVYVPAGSAFSVTATTD 102 (270)
T ss_pred -------ccccccCCCCCeEEecCCceEEEEeecc
Confidence 1222455677999999999999999755
No 201
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=42.49 E-value=1e+02 Score=26.92 Aligned_cols=62 Identities=11% Similarity=0.147 Sum_probs=33.7
Q ss_pred CCeeeccccc-CCCcEEEEE-eceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEE
Q 039441 210 PSTLVVPHHS-DAETILVLL-KGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVA 275 (539)
Q Consensus 210 P~~l~lPh~~-dA~~~~yV~-~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv 275 (539)
-+|++||.=+ ..+..+.|+ =|.|... ..|......|+.||.+.+|.-....+... ++++.|+
T Consensus 22 ~gGI~Lp~~a~~k~~~G~VvaVG~G~~~--~~G~~~~~~vk~GD~Vlf~~~~g~ev~~~--~~~y~iv 85 (95)
T PRK00364 22 AGGIVLPDSAKEKPQEGEVVAVGPGRRL--DNGERVPLDVKVGDKVLFGKYAGTEVKID--GEEYLIL 85 (95)
T ss_pred cceEEcCccccCCcceEEEEEECCCeEC--CCCCEeecccCCCCEEEEcCCCCeEEEEC--CEEEEEE
Confidence 3678888732 333333222 3333221 12233456899999999996555555443 3555443
No 202
>PF05962 HutD: HutD; InterPro: IPR010282 This entry contains proteins of unknown function, which include HutD from Pseudomonas fluorescens and Ves from Escherichia coli K12. HutD from P. fluorescens is a component of the histidine uptake and utilisation operon. HutD is operonic with the well characterised repressor protein HutC. Genetic analysis using transcriptional fusions (lacZ) and deletion mutants shows that hutD is necessary to maintain fitness in environments replete with histidine. HutD probably sets an upper bound on the level of hut operon transcription []. The mechanistic basis is unknown, but in silico molecular docking studies based on the crystal structure of HutD from Pseudomonas aeruginosa show that urocanate (the first breakdown product of histidine) docks with the active site of HutD.; PDB: 3ESG_A 1YLL_D.
Probab=41.59 E-value=3.4e+02 Score=26.33 Aligned_cols=89 Identities=17% Similarity=0.233 Sum_probs=56.8
Q ss_pred EecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEE
Q 039441 175 VRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVIS 254 (539)
Q Consensus 175 v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~ 254 (539)
=++-+|.++-|=.|...+ ..++ ..+|+.+=++.-.+- -=.+..-+.++-++.|.|+ .+..++......+.+++.++
T Consensus 11 WkNggG~T~Ei~~~P~~~-~~~~-F~wRiS~A~V~~~g~-FS~FpG~~R~l~~L~G~gl-~L~~~~~~~~~~l~p~~~~~ 86 (184)
T PF05962_consen 11 WKNGGGTTREIAIYPEGS-AKRD-FDWRISIATVEADGP-FSDFPGYDRILTLLEGNGL-RLTHDGQQEHTLLQPFQPFA 86 (184)
T ss_dssp -TTSSEEEEEEEE-SSSC-CCCC--SEEEEEEEE-SSEE-E---TT-EEEEEEEESS-E-EEEETTCSE-EEE-BT--EE
T ss_pred ccCCCeEEEEEEEcCCCC-ccCC-ceEEEEEEEEcCCCC-CCCCCCCcEEEEEEeCCcE-EEecCCCcceeccCCCCcEE
Confidence 367789998877777655 2222 358888877777776 5557788899999999853 44455655666799999999
Q ss_pred eCCCCeEEEEecC
Q 039441 255 VPAGTTYYLSNQD 267 (539)
Q Consensus 255 iPaG~~h~i~N~g 267 (539)
|+-+...+....+
T Consensus 87 F~G~~~v~~~l~~ 99 (184)
T PF05962_consen 87 FDGDWPVTSELLD 99 (184)
T ss_dssp EETTS-EEEEESS
T ss_pred cCCCCeEEEEECC
Confidence 9999999999876
No 203
>KOG3995 consensus 3-hydroxyanthranilate oxygenase HAAO [Amino acid transport and metabolism]
Probab=41.19 E-value=29 Score=34.87 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=40.4
Q ss_pred eecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcC
Q 039441 374 HYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVAS 449 (539)
Q Consensus 374 HwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~ 449 (539)
|.+ -..+|.|-.+|.-.+-|+..+- +-+--+++||+|.+|+..+|.-.-.
T Consensus 49 Hie-egeE~FyQ~KGdMvLKVie~g~-------------------------~rDivI~qGe~flLParVpHSPqRF 98 (279)
T KOG3995|consen 49 HIE-EGEEVFYQLKGDMVLKVLEQGK-------------------------HRDVVIRQGEIFLLPARVPHSPQRF 98 (279)
T ss_pred ccC-CcchhheeecCceEEeeeccCc-------------------------ceeeEEecCcEEEeccCCCCChhhh
Confidence 443 3789999999999999998752 3456689999999999999986544
No 204
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=40.83 E-value=1.4e+02 Score=28.99 Aligned_cols=64 Identities=13% Similarity=0.046 Sum_probs=43.2
Q ss_pred EEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeC--
Q 039441 362 YVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIP-- 439 (539)
Q Consensus 362 ~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVP-- 439 (539)
...+.+|-++..-= -.++.+.||++|..++...+++|. .++..-+.+||+|-.+
T Consensus 39 ~~~~~kge~l~~~G-d~~~~ly~v~~G~v~~~~~~~~G~-----------------------e~i~~~~~~gd~~g~~~~ 94 (235)
T PRK11161 39 KKPIQKGQTLFKAG-DELKSLYAIRSGTIKSYTITEQGD-----------------------EQITGFHLAGDLVGFDAI 94 (235)
T ss_pred ceeecCCCEeECCC-CCcceEEEEeeceEEEEEECCCCC-----------------------EEEEEeccCCceeccccc
Confidence 34677887764433 247889999999999999998763 2444556899998543
Q ss_pred --CCCeEEEEcC
Q 039441 440 --PGHPIALVAS 449 (539)
Q Consensus 440 --aG~~h~i~n~ 449 (539)
..+++...+.
T Consensus 95 ~~~~~~~~~~a~ 106 (235)
T PRK11161 95 GSGQHPSFAQAL 106 (235)
T ss_pred cCCCCcceEEEe
Confidence 2234444454
No 205
>PRK04043 tolB translocation protein TolB; Provisional
Probab=40.58 E-value=5.2e+02 Score=28.21 Aligned_cols=35 Identities=11% Similarity=0.253 Sum_probs=26.2
Q ss_pred EcCCcee-cceecCCCCEEEEEEe--ceEEEEEecCCC
Q 039441 365 INQGGMM-VPHYNSKATTIVLVVE--GRGRFEMGGPLS 399 (539)
Q Consensus 365 L~pGgm~-~PHwhpnA~ei~yV~~--G~g~v~vV~p~g 399 (539)
|+.++.. .|.|.|+...|+|+.. |...+.++.-+|
T Consensus 364 LT~~~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 364 LTANGVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred CCCCCCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3444333 5999999999999885 667788888876
No 206
>PHA02890 hypothetical protein; Provisional
Probab=39.27 E-value=96 Score=32.08 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=43.3
Q ss_pred CCcEEE--EEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCCCceEEEEE
Q 039441 221 AETILV--LLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVAK 276 (539)
Q Consensus 221 A~~~~y--V~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv~ 276 (539)
+.+-+| +++|++.|-+-..+..-+++|.+||.+.+--|+-|.+.- .+-.|.|+.
T Consensus 90 SnEy~FVlCL~Gs~~In~~~~d~~iS~~I~kGeaF~mdv~t~H~i~T--Knl~L~Vik 145 (278)
T PHA02890 90 KIECFFVACIEGSCKINVNIGDREISDHIHENQGFIMDVGLDHAIDS--DNVGLFITK 145 (278)
T ss_pred eccEEEEEEeCCeEEEEEecCCceeeeeeecCceEEEEccceEEEEc--cceeEEEEE
Confidence 344444 679999999998888899999999999999999999998 244444443
No 207
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=39.18 E-value=70 Score=27.73 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=21.3
Q ss_pred eEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEE
Q 039441 425 KISANLSPGVVFIIPPGHPIALVASPNEKLLTV 457 (539)
Q Consensus 425 ~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v 457 (539)
.....|+.||.+++|.+....+.. +++...++
T Consensus 53 ~~~~~vk~GD~Vl~~~~~g~~v~~-~~~~y~i~ 84 (93)
T cd00320 53 RVPLSVKVGDKVLFPKYAGTEVKL-DGEEYLIL 84 (93)
T ss_pred CccccccCCCEEEECCCCceEEEE-CCEEEEEE
Confidence 345679999999999966555444 34444444
No 208
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=39.08 E-value=51 Score=30.59 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=39.4
Q ss_pred CcceeeEEEeeeCCCeeecccccCCCcEEEEE----eceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEe
Q 039441 197 GIDNYRLAILEANPSTLVVPHHSDAETILVLL----KGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSN 265 (539)
Q Consensus 197 gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~----~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N 265 (539)
|+.|.-+++|-|+++.-.-- .|-+++.-++ .|..-|++-+.. -..+.+|||+.+--|.+.+++|
T Consensus 13 ~~kN~~v~fIvl~~g~~tkT--kdg~~v~~~kVaD~TgsI~isvW~e~---~~~~~PGDIirLt~Gy~Si~qg 80 (134)
T KOG3416|consen 13 GLKNINVTFIVLEYGRATKT--KDGHEVRSCKVADETGSINISVWDEE---GCLIQPGDIIRLTGGYASIFQG 80 (134)
T ss_pred hhhcceEEEEEEeeceeeec--cCCCEEEEEEEecccceEEEEEecCc---CcccCCccEEEecccchhhhcC
Confidence 66677777766677654432 2333333322 233333443321 2358999999999999999998
No 209
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain. Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.
Probab=39.00 E-value=1.4e+02 Score=24.23 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=39.8
Q ss_pred EEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeC
Q 039441 360 VTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIP 439 (539)
Q Consensus 360 va~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVP 439 (539)
+....+.+|-.+. +-.-.++.+.+|++|...+.....++. ......+.+||+|-..
T Consensus 17 ~~~~~~~~g~~l~-~~g~~~~~~y~v~~G~v~~~~~~~~g~-----------------------~~~~~~~~~g~~~g~~ 72 (120)
T smart00100 17 LEPVRYPAGEVII-RQGDVGDSFYIILSGEVRVYKVLEDGR-----------------------EQILGILGPGDFFGEL 72 (120)
T ss_pred ceEEEeCCCCEEE-eCCCcCCcEEEEEeeEEEEEEECCCCc-----------------------eEEEEeecCCceechh
Confidence 4456778887652 222347889999999999988766542 2455778999988654
Q ss_pred C
Q 039441 440 P 440 (539)
Q Consensus 440 a 440 (539)
.
T Consensus 73 ~ 73 (120)
T smart00100 73 A 73 (120)
T ss_pred h
Confidence 4
No 210
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=37.88 E-value=56 Score=31.93 Aligned_cols=49 Identities=16% Similarity=0.262 Sum_probs=37.7
Q ss_pred EeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCce-eeecCCCcEE
Q 039441 205 ILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRE-SFNMEHGDVI 253 (539)
Q Consensus 205 il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~-~~~v~~GDV~ 253 (539)
..++++|..+...-..++.+++|++|.+.+.....++.. ...+.+||++
T Consensus 32 ~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~~~~~~~i~~~~~g~~~ 81 (236)
T PRK09392 32 LQRFPPGTMLITEGEPADFLFVVLDGLVELSASSQDRETTLAILRPVSTF 81 (236)
T ss_pred eeecCCCCEEEeCCCccceEEEEEeCEEEEEEcCCCceEEEEEeCCCchh
Confidence 345699999888888899999999999999877655433 3456777765
No 211
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional
Probab=35.11 E-value=86 Score=30.54 Aligned_cols=48 Identities=8% Similarity=0.106 Sum_probs=38.7
Q ss_pred eCCCeeecccccCCCcEEEEEeceEEEEEEeCCCce-ee-ecCCCcEEEe
Q 039441 208 ANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRE-SF-NMEHGDVISV 255 (539)
Q Consensus 208 l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~-~~-~v~~GDV~~i 255 (539)
+.+|..+...--.++.++||++|...+...++++.+ +. -+.+||++..
T Consensus 42 ~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~ 91 (235)
T PRK11161 42 IQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGF 91 (235)
T ss_pred ecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceecc
Confidence 488888888888889999999999999999877654 33 4479999854
No 212
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=34.84 E-value=14 Score=43.61 Aligned_cols=20 Identities=30% Similarity=0.446 Sum_probs=18.4
Q ss_pred CCCcEEEeCCCCeEEEEecC
Q 039441 248 EHGDVISVPAGTTYYLSNQD 267 (539)
Q Consensus 248 ~~GDV~~iPaG~~h~i~N~g 267 (539)
.-||+|+||||.+|=+.|+-
T Consensus 804 ~LGdAVfIPAGaPHQVrNLk 823 (889)
T KOG1356|consen 804 FLGDAVFIPAGAPHQVRNLK 823 (889)
T ss_pred cccceEEecCCCcHHhhhhh
Confidence 45999999999999999986
No 213
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=33.89 E-value=84 Score=29.34 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=29.6
Q ss_pred cCCCcEEEEEeceEEEEEEeCCCce--eeecCCCcEEE
Q 039441 219 SDAETILVLLKGKGVITLVSHERRE--SFNMEHGDVIS 254 (539)
Q Consensus 219 ~dA~~~~yV~~G~g~i~~v~pg~~~--~~~v~~GDV~~ 254 (539)
..++.+++|++|...+..+++++.+ ..-+.+||++-
T Consensus 9 ~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G 46 (193)
T TIGR03697 9 DPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFG 46 (193)
T ss_pred CCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEee
Confidence 3567899999999999999988765 46789999773
No 214
>COG3542 Uncharacterized conserved protein [Function unknown]
Probab=33.75 E-value=4.4e+02 Score=25.34 Aligned_cols=82 Identities=13% Similarity=0.240 Sum_probs=50.2
Q ss_pred eeEEEEEEcCCceecceecCC-CCEEEEEEec-eEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcE
Q 039441 358 AGVTYVEINQGGMMVPHYNSK-ATTIVLVVEG-RGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVV 435 (539)
Q Consensus 358 isva~v~L~pGgm~~PHwhpn-A~ei~yV~~G-~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV 435 (539)
..+.+.-|+++.+. |||-. |++|-++..| .+.+.|+..+... + .++-..|+.|.+
T Consensus 44 sT~IYyLLe~~~~s--~~HRv~a~eiwHf~ag~pl~~~l~~dG~~~--------------------s-~~LG~d~~~Ge~ 100 (162)
T COG3542 44 STAIYYLLEEDNIS--AWHRVTADEIWHFYAGAPLELHLSEDGGAE--------------------S-FTLGPDLEKGER 100 (162)
T ss_pred eEEEEEEecCCccc--hheecchhheEEEecCCceEEEEEeCCCeE--------------------E-EEecccccCCce
Confidence 34556678888865 77755 8888888877 4778787743211 0 234466788876
Q ss_pred --EEeCCCCe-EEEEcCCCCcEEEEEEeecC
Q 039441 436 --FIIPPGHP-IALVASPNEKLLTVGFSLNA 463 (539)
Q Consensus 436 --~vVPaG~~-h~i~n~gne~l~~v~F~~na 463 (539)
+|||+|.. -..+..|+ +-.+|+-.+.+
T Consensus 101 ~Q~vVP~g~w~aS~~~~g~-~~tLVgCtVaP 130 (162)
T COG3542 101 PQYVVPAGTWWASAVSLGE-DYTLVGCTVAP 130 (162)
T ss_pred eEEEEeCCcEEEEEEecCC-CceEEEEEecC
Confidence 68999933 33333332 45556544444
No 215
>PLN02868 acyl-CoA thioesterase family protein
Probab=32.93 E-value=1e+02 Score=33.40 Aligned_cols=52 Identities=13% Similarity=0.173 Sum_probs=42.0
Q ss_pred EEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCc-eeeecCCCcEEEe
Q 039441 204 AILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERR-ESFNMEHGDVISV 255 (539)
Q Consensus 204 ~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~-~~~~v~~GDV~~i 255 (539)
.+.+..++.++.-.=-.++.+++|++|++.|....+++. ....+.+||++-.
T Consensus 32 ~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~ge~~l~~l~~Gd~fG~ 84 (413)
T PLN02868 32 VPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEESRPEFLLKRYDYFGY 84 (413)
T ss_pred eEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCCcEEEEEeCCCCEeeh
Confidence 445669999988887788899999999999988877653 3567899999873
No 216
>PHA02890 hypothetical protein; Provisional
Probab=32.72 E-value=1.8e+02 Score=30.22 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=42.9
Q ss_pred CCEEEEE--EeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEE
Q 039441 379 ATTIVLV--VEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLT 456 (539)
Q Consensus 379 A~ei~yV--~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~ 456 (539)
+.|.+|| +.|+..|.+...+ +..+..+.+||.|.+--+.-|.+.. .+-.|.+
T Consensus 90 SnEy~FVlCL~Gs~~In~~~~d-------------------------~~iS~~I~kGeaF~mdv~t~H~i~T-Knl~L~V 143 (278)
T PHA02890 90 KIECFFVACIEGSCKINVNIGD-------------------------REISDHIHENQGFIMDVGLDHAIDS-DNVGLFI 143 (278)
T ss_pred eccEEEEEEeCCeEEEEEecCC-------------------------ceeeeeeecCceEEEEccceEEEEc-cceeEEE
Confidence 4455555 5677777776654 3678899999999999999999877 4555656
Q ss_pred EEEeecC
Q 039441 457 VGFSLNA 463 (539)
Q Consensus 457 v~F~~na 463 (539)
+-+.++.
T Consensus 144 iky~vd~ 150 (278)
T PHA02890 144 TKFEVDA 150 (278)
T ss_pred EEEEecc
Confidence 6565554
No 217
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=32.71 E-value=2.6e+02 Score=23.34 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=16.4
Q ss_pred eCCCcEEEeCC-CCeEEEEcC
Q 039441 430 LSPGVVFIIPP-GHPIALVAS 449 (539)
Q Consensus 430 L~~GDV~vVPa-G~~h~i~n~ 449 (539)
.++|+++++|. ...|.....
T Consensus 66 p~~g~~v~F~~~~~~H~v~~v 86 (100)
T PF13640_consen 66 PKPGRLVIFPSDNSLHGVTPV 86 (100)
T ss_dssp -BTTEEEEEESCTCEEEEEEE
T ss_pred CCCCEEEEEeCCCCeecCccc
Confidence 89999999999 888887665
No 218
>PF13464 DUF4115: Domain of unknown function (DUF4115)
Probab=32.30 E-value=2.8e+02 Score=22.67 Aligned_cols=52 Identities=17% Similarity=0.170 Sum_probs=38.8
Q ss_pred EEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEEEEE
Q 039441 384 LVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLTVGF 459 (539)
Q Consensus 384 yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~v~F 459 (539)
+...|...++|.+.+|. ..+...|++||.+-++..-++.+.- ||-..+-|.+
T Consensus 3 l~a~~~sWv~V~d~dG~-----------------------~~~~~~l~~G~~~~~~~~~~~~i~i-Gna~~v~v~~ 54 (77)
T PF13464_consen 3 LTATGDSWVEVTDADGK-----------------------VLFSGTLKAGETKTFEGKEPFRIRI-GNAGAVEVTV 54 (77)
T ss_pred EEEeCCeEEEEEeCCCc-----------------------EeeeeeeCCCcEEEEeCCCCEEEEE-eCCCcEEEEE
Confidence 44568888999987763 4788899999999998888877655 4655555544
No 219
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=31.27 E-value=93 Score=28.87 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=39.1
Q ss_pred EeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCce--eeecCCCcEEEeCC
Q 039441 205 ILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRE--SFNMEHGDVISVPA 257 (539)
Q Consensus 205 il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~--~~~v~~GDV~~iPa 257 (539)
...+.++..+...=-.++.+++|++|...+....+++++ ..-+.+||++-..+
T Consensus 25 ~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~ 79 (214)
T COG0664 25 VRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELA 79 (214)
T ss_pred eEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHH
Confidence 334477766666555666699999999999999987653 34589999986654
No 220
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=31.04 E-value=1e+02 Score=28.38 Aligned_cols=34 Identities=15% Similarity=0.423 Sum_probs=27.3
Q ss_pred CCCChHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHhh
Q 039441 43 VPQDPEEEYKQCKQLCEKQ-------------------EAVQRRCERHYKEQQ 76 (539)
Q Consensus 43 ~~~dp~~~~~~c~~~c~~q-------------------~~c~~~ce~~~~~~~ 76 (539)
....+.+.+..|-.+|..- +-|...|...++...
T Consensus 40 d~~~s~e~V~~Cve~C~~pl~~aq~~vq~El~~FQ~rlqrC~~~C~dk~~d~~ 92 (131)
T PF05811_consen 40 DSSASMEQVQRCVERCQQPLQQAQNYVQNELEQFQNRLQRCVMHCQDKAKDKM 92 (131)
T ss_pred CCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4667788999999999853 289999999888643
No 221
>PRK00924 5-keto-4-deoxyuronate isomerase; Provisional
Probab=30.57 E-value=3.5e+02 Score=28.33 Aligned_cols=31 Identities=13% Similarity=0.016 Sum_probs=22.8
Q ss_pred eeeCCCcEEEeCCCCeEEEEcCCC--CcEEEEE
Q 039441 428 ANLSPGVVFIIPPGHPIALVASPN--EKLLTVG 458 (539)
Q Consensus 428 ~~L~~GDV~vVPaG~~h~i~n~gn--e~l~~v~ 458 (539)
+.|.+.|.++||.|...++.++.+ .+++|..
T Consensus 94 ~~l~~~d~LYVp~G~~~v~~as~~a~~paef~i 126 (276)
T PRK00924 94 YELGHRDALYVGKGAKEVVFASADAANPAKFYL 126 (276)
T ss_pred EecCCCcEEEECCCCcEEEEEecCCCCCcEEEE
Confidence 458899999999999977776432 4456553
No 222
>PRK09774 fec operon regulator FecR; Reviewed
Probab=29.83 E-value=3.7e+02 Score=28.17 Aligned_cols=82 Identities=20% Similarity=0.197 Sum_probs=58.4
Q ss_pred eEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeecccccCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEE
Q 039441 174 RVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPHHSDAETILVLLKGKGVITLVSHERRESFNMEHGDVI 253 (539)
Q Consensus 174 ~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh~~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~ 253 (539)
-+.|..|.++.+.-=| |. + +.|++++-+--.|.....-+..++|++.+.+.......-|.|..|+.-
T Consensus 110 ~~~T~~Ge~r~v~L~D-------GS---~---v~Ln~~S~l~~~~~~~~R~v~L~~Gea~F~Va~d~~~rPF~V~t~~~~ 176 (319)
T PRK09774 110 DYRTAKGEVSRQRLED-------GS---L---LTLNTQSAVDVRFDAHQRTVRLWYGEIAITTAKDALQRPFRVLTRQGQ 176 (319)
T ss_pred eeecCCCceEEEEcCC-------CC---E---EEEcCCCeEEEeecCCeeEEEEeccEEEEEEcCCCCCCCEEEEeCCcE
Confidence 4567778777533322 31 2 344998877667777777788889999999765431356888888888
Q ss_pred EeCCCCeEEEEecCC
Q 039441 254 SVPAGTTYYLSNQDN 268 (539)
Q Consensus 254 ~iPaG~~h~i~N~g~ 268 (539)
+---||.|-+.+.++
T Consensus 177 v~vlGT~F~V~~~~~ 191 (319)
T PRK09774 177 LTALGTEFTVRQQDN 191 (319)
T ss_pred EEEeeeEEEEEEcCC
Confidence 888899999988764
No 223
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=28.32 E-value=2.2e+02 Score=24.66 Aligned_cols=57 Identities=14% Similarity=0.283 Sum_probs=35.7
Q ss_pred CCeeecccccC-CCcEEEEEeceEEEEEEeCCC------ceeeecCCCcEEEeCCCCeEEEEecCCCceEEEE
Q 039441 210 PSTLVVPHHSD-AETILVLLKGKGVITLVSHER------RESFNMEHGDVISVPAGTTYYLSNQDNVDRLHVA 275 (539)
Q Consensus 210 P~~l~lPh~~d-A~~~~yV~~G~g~i~~v~pg~------~~~~~v~~GDV~~iPaG~~h~i~N~g~~e~L~iv 275 (539)
-+|++||.=.. .+. .|+|-.|-||. .....|+.||.+.+|......+-..+ +++.|+
T Consensus 21 ~~GI~Lp~~~~~k~~-------~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~--~~y~i~ 84 (93)
T cd00320 21 KGGIILPDSAKEKPQ-------EGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLDG--EEYLIL 84 (93)
T ss_pred cceEEeCCCcCCCce-------EEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEECC--EEEEEE
Confidence 46788887443 222 34444455552 33568999999999987776666643 555443
No 224
>PLN02868 acyl-CoA thioesterase family protein
Probab=28.22 E-value=3.3e+02 Score=29.53 Aligned_cols=55 Identities=11% Similarity=0.040 Sum_probs=40.4
Q ss_pred EEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeC
Q 039441 360 VTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIP 439 (539)
Q Consensus 360 va~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVP 439 (539)
+....+.+|.++.-- .-.++.+.+|++|..++....+++ ...-..+.+||+|-..
T Consensus 31 ~~~~~~~~Ge~I~~~-Gd~~~~lyiI~~G~V~v~~~~~~g------------------------e~~l~~l~~Gd~fG~~ 85 (413)
T PLN02868 31 VVPKRYGKGEYVVRE-GEPGDGLYFIWKGEAEVSGPAEEE------------------------SRPEFLLKRYDYFGYG 85 (413)
T ss_pred ceEEEECCCCEEEeC-CCcCceEEEEEeCEEEEEEECCCC------------------------cEEEEEeCCCCEeehh
Confidence 455678888876433 235788999999999998887765 1344678999998753
No 225
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=27.84 E-value=86 Score=30.62 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=37.4
Q ss_pred CCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEec
Q 039441 220 DAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQ 266 (539)
Q Consensus 220 dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~ 266 (539)
....+..-+.|+|.+.+...|.....+|.+|+-+.|.++.+..+.+.
T Consensus 128 ~~g~~~~~l~G~G~v~l~~~G~i~~i~L~~ge~~~Vd~~~lVA~~~~ 174 (215)
T PF01987_consen 128 GEGLFMLKLSGRGTVFLSGYGAIYEIDLAPGEEIIVDPGHLVAWSGS 174 (215)
T ss_dssp TS-EEEEEEESSCEEEEEECCSEEEEEEE-EEEEEEEGGGEEEEETT
T ss_pred CCCcEEEEEEEEEEEEEEeCCcEEEEEccCCceEEEcCCCEEEECCC
Confidence 34455567899999999999998888999999999988888777764
No 226
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial. Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.
Probab=27.81 E-value=1.1e+02 Score=28.57 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=29.8
Q ss_pred CCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeC
Q 039441 379 ATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIP 439 (539)
Q Consensus 379 A~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVP 439 (539)
++.+.+|++|..++..+.++|. ...-.-+.+||+|-.+
T Consensus 11 ~~~~~~i~~G~v~~~~~~~~G~-----------------------e~~l~~~~~g~~~G~~ 48 (193)
T TIGR03697 11 AEKVYFLRRGAVKLSRVYESGE-----------------------EITVALLRENSVFGVL 48 (193)
T ss_pred CCcEEEEEecEEEEEEeCCCCc-----------------------EeeeEEccCCCEeeee
Confidence 5678999999999999998873 2444678999987543
No 227
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=27.04 E-value=46 Score=29.22 Aligned_cols=25 Identities=24% Similarity=0.586 Sum_probs=17.0
Q ss_pred ceEEEEEEeCCCceeeecCCCcEEEeCCCCeEE
Q 039441 230 GKGVITLVSHERRESFNMEHGDVISVPAGTTYY 262 (539)
Q Consensus 230 G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~ 262 (539)
|+|+++ +.+|++||+|.+|...+..
T Consensus 1 GrGl~A--------t~dI~~Ge~I~~p~~~~~~ 25 (162)
T PF00856_consen 1 GRGLFA--------TRDIKAGEVILIPRPAILT 25 (162)
T ss_dssp SEEEEE--------SS-B-TTEEEEEESEEEEE
T ss_pred CEEEEE--------CccCCCCCEEEEECcceEE
Confidence 566655 6789999999888866643
No 228
>PRK15186 AraC family transcriptional regulator; Provisional
Probab=26.73 E-value=1.8e+02 Score=30.30 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=37.3
Q ss_pred CCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEecCC
Q 039441 220 DAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQDN 268 (539)
Q Consensus 220 dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~g~ 268 (539)
-.+.|+||.+|...|..-. ..+..+..+.++++|.+..|.+.|...
T Consensus 37 ~~~~li~v~~G~~~i~~~~---g~~l~i~~p~~~~~p~~~~~~~~~~~~ 82 (291)
T PRK15186 37 LQSVLIKLTTGKISITTSS---GEYITASGPMLIFLAKDQTIHITMEET 82 (291)
T ss_pred cceEEEEeccceEEEEeCC---CceEEeCCCeEEEEeCCcEEEEEeccc
Confidence 4567889999888776522 356789999999999999999999864
No 229
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]
Probab=25.29 E-value=2.1e+02 Score=26.50 Aligned_cols=76 Identities=13% Similarity=0.175 Sum_probs=50.0
Q ss_pred eeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEE
Q 039441 358 AGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFI 437 (539)
Q Consensus 358 isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~v 437 (539)
..+....+.+|...... --.++.+.+|++|...+....++|. ..+...+.+||+|-
T Consensus 21 ~~~~~~~~~~g~~l~~~-g~~~~~~y~v~~G~v~~~~~~~~G~-----------------------~~~~~~~~~g~~fg 76 (214)
T COG0664 21 LKLEVRKLPKGEVLFTE-GEEADSLYIILSGIVKLYANTEDGR-----------------------EIILGFLGPGDFFG 76 (214)
T ss_pred hhceeEeeCCCCEEEcC-CCcCceEEEEEEeEEEEEEECCCCc-----------------------EEEEEEecCCchhh
Confidence 44556667777554332 2346779999999999999999863 24446799999998
Q ss_pred eCCC-----CeEEEEcCCCCcEEEEEE
Q 039441 438 IPPG-----HPIALVASPNEKLLTVGF 459 (539)
Q Consensus 438 VPaG-----~~h~i~n~gne~l~~v~F 459 (539)
.++- .++...+..+ ..++.+
T Consensus 77 ~~~l~~~~~~~~~~~a~~~--~~~~~~ 101 (214)
T COG0664 77 ELALLGGDPRSASAVALTD--VEVLEI 101 (214)
T ss_pred hHHHhcCCCccceEEEcce--EEEEEe
Confidence 7753 3445555533 444443
No 230
>PF06719 AraC_N: AraC-type transcriptional regulator N-terminus; InterPro: IPR009594 This entry represents the N terminus of bacterial ARAC-type transcriptional regulators. In Escherichia coli these regulate the L-arabinose operon through sensing the presence of arabinose, and when the sugar is present, transmitting this information from the arabinose-binding domains to the protein s DNA-binding domains []. This family might represent the N-terminal arm of the protein, which binds to the C-terminal DNA binding domains to hold them in a state where the protein prefers to loop and remain non-activating []. This domain is associated with the IPR000005 from INTERPRO domain.
Probab=25.25 E-value=5.6e+02 Score=23.82 Aligned_cols=57 Identities=23% Similarity=0.429 Sum_probs=44.8
Q ss_pred CCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEE---EcCCCCcE
Q 039441 378 KATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIAL---VASPNEKL 454 (539)
Q Consensus 378 nA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i---~n~gne~l 454 (539)
....|.+|++|+=++.+-.. . +.+.+|+.+++|...|+.. .|+.+.++
T Consensus 22 y~p~i~~vlQG~K~~~~g~~---------------------------~--~~Y~~g~~lv~~~~lPv~~~v~~AS~~~P~ 72 (155)
T PF06719_consen 22 YEPSICIVLQGSKRVHLGDQ---------------------------V--FEYDAGQYLVSSVDLPVESEVVEASPEEPY 72 (155)
T ss_pred cCCeEEEEEeeeEEEEECCc---------------------------e--EEecCCcEEEecCCCcEEEEEeeccCCCCE
Confidence 56789999999987766422 3 5689999999999999875 56677888
Q ss_pred EEEEEeecC
Q 039441 455 LTVGFSLNA 463 (539)
Q Consensus 455 ~~v~F~~na 463 (539)
.-+.+..+.
T Consensus 73 l~l~l~ld~ 81 (155)
T PF06719_consen 73 LALSLELDP 81 (155)
T ss_pred EEEEEEcCH
Confidence 888777654
No 231
>KOG2894 consensus Uncharacterized conserved protein XAP-5 [Function unknown]
Probab=25.16 E-value=1.2e+02 Score=31.82 Aligned_cols=52 Identities=25% Similarity=0.436 Sum_probs=34.6
Q ss_pred CccchhhhHHHHHHHhhh--hhHHHHhhhhhhccC------------------CCCChHHHHHHHHHHHHHHHHHHHHHH
Q 039441 10 SSVGIREREEERHREQRE--RDWEREREQFEDINI------------------VPQDPEEEYKQCKQLCEKQEAVQRRCE 69 (539)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------------------~~~dp~~~~~~c~~~c~~q~~c~~~ce 69 (539)
|-+-=|||+|++.|..++ .+|++++++..++++ +..||. .+|+++|-
T Consensus 153 SFLPDrEREeeEnr~RE~L~~eW~~~qe~~K~Eei~it~sYWDGsgHRr~v~~rKGnti-------------~qfL~~~~ 219 (331)
T KOG2894|consen 153 SFLPDREREEEENRLREELRQEWEAKQEKIKNEEIEITFSYWDGSGHRRNVKVRKGNTI-------------QQFLQKAL 219 (331)
T ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeecCCCcceeeeecCCChH-------------HHHHHHHH
Confidence 334557888877654443 489988877766655 667773 35777777
Q ss_pred HHHHH
Q 039441 70 RHYKE 74 (539)
Q Consensus 70 ~~~~~ 74 (539)
+.+++
T Consensus 220 e~L~k 224 (331)
T KOG2894|consen 220 EQLRK 224 (331)
T ss_pred HHHHH
Confidence 77765
No 232
>COG1339 Transcriptional regulator of a riboflavin/FAD biosynthetic operon [Transcription / Coenzyme metabolism]
Probab=25.15 E-value=96 Score=30.98 Aligned_cols=69 Identities=23% Similarity=0.553 Sum_probs=50.4
Q ss_pred eEecCCceEEEeeccCcccccccCcceeeEEEeeeCCCeeeccc--ccCCCcEEEEEeceEEEEEEeCCC-ceeeecCCC
Q 039441 174 RVRSDSGHMRVLQRFSQKSHLLRGIDNYRLAILEANPSTLVVPH--HSDAETILVLLKGKGVITLVSHER-RESFNMEHG 250 (539)
Q Consensus 174 ~v~se~G~i~vl~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh--~~dA~~~~yV~~G~g~i~~v~pg~-~~~~~v~~G 250 (539)
.+++-.|.+ .+.|.....-|-++..|+..|-- -|++++.|. ||.++ +|-+|.|=. ++..+|+-|
T Consensus 139 ~l~~~~gi~--Iegf~~~~RtfG~v~~yp~~Ing-i~gaiV~P~rT~h~~d----------viEIIapv~LR~~LnLkDG 205 (214)
T COG1339 139 RLRESRGIR--IEGFKTEDRTFGGVKAYPCKING-IEGAIVIPERTHHPTD----------VIEIIAPVKLRDELNLKDG 205 (214)
T ss_pred hhccCCCEe--eCCCCCCCceeccEEEEEEEEcC-cceEEEeeccccCCcc----------eEEEEccHhHHHHhCCCCC
Confidence 455555554 35788888888899999988844 688899887 56554 456666654 468899999
Q ss_pred cEEEe
Q 039441 251 DVISV 255 (539)
Q Consensus 251 DV~~i 255 (539)
|.|.|
T Consensus 206 D~V~i 210 (214)
T COG1339 206 DEVTI 210 (214)
T ss_pred CEEEE
Confidence 99876
No 233
>PHA02699 hypothetical protein; Provisional
Probab=25.13 E-value=1.7e+02 Score=31.92 Aligned_cols=47 Identities=11% Similarity=0.275 Sum_probs=38.4
Q ss_pred CCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEc
Q 039441 378 KATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVA 448 (539)
Q Consensus 378 nA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n 448 (539)
.+--.++.++-+|..++.-|++ ..+..++..||.+|+|+...+.+.-
T Consensus 166 agFvAtICIKNeGiSgI~Vp~T------------------------~~lktnmqeGD~IVsRSsRGI~FLP 212 (466)
T PHA02699 166 AAFVAIICIKNEGMAAIAVNNT------------------------KFLKTNIQEGDAIVFPAARGMFFLP 212 (466)
T ss_pred cceEEEEEEcCCCeeEEEecCC------------------------cceeeeeecCCEEEEehhchhhhhh
Confidence 4566677889999999999986 3566889999999999988877654
No 234
>KOG1417 consensus Homogentisate 1,2-dioxygenase [Amino acid transport and metabolism]
Probab=24.98 E-value=6.3e+02 Score=26.93 Aligned_cols=80 Identities=13% Similarity=0.130 Sum_probs=50.9
Q ss_pred EEEeCCcccccccccceeEEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhc
Q 039441 342 FFEATPKDYQQLQEIDAGVTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSR 421 (539)
Q Consensus 342 i~~~~~~~fP~L~~l~isva~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~ 421 (539)
++++....-+.++. |+++-....+.+--..-.||++.+-+++--+|...++--+-
T Consensus 119 L~TvCGaGd~~sr~-GlAIH~~~cN~sM~~safyNsDGDFLiVPQ~G~L~I~TEfG------------------------ 173 (446)
T KOG1417|consen 119 LHTVCGAGDSFSRH-GLAIHIYSCNTSMENSAFYNSDGDFLIVPQQGRLWITTEFG------------------------ 173 (446)
T ss_pred cceeccCCCccccc-ceEEEEEeecCCcccceeecCCCCEEEecccCcEEEEeecc------------------------
Confidence 44555444444443 55555544444333456788888887777777766654332
Q ss_pred ceeeEEeeeCCCcEEEeCCCCeEEEEcCCC
Q 039441 422 ELQKISANLSPGVVFIIPPGHPIALVASPN 451 (539)
Q Consensus 422 ~y~~~~~~L~~GDV~vVPaG~~h~i~n~gn 451 (539)
+. -|.++.+-|||+|.-+.+--.+.
T Consensus 174 --rl---lV~P~EI~VIpqG~RFsi~v~~~ 198 (446)
T KOG1417|consen 174 --RL---LVTPNEIAVIPQGIRFSIDVPGP 198 (446)
T ss_pred --ce---eecccceEEeecccEEEEecCCC
Confidence 23 38999999999999988755443
No 235
>PF04943 Pox_F11: Poxvirus F11 protein; InterPro: IPR007027 These proteins belong to the poxvirus F11 family. They are early virus proteins.
Probab=24.92 E-value=2.1e+02 Score=31.11 Aligned_cols=56 Identities=13% Similarity=0.218 Sum_probs=42.6
Q ss_pred CCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEE
Q 039441 367 QGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIAL 446 (539)
Q Consensus 367 pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i 446 (539)
.|.++.|+. -+--.+.+++-+|..++.-|++ ..+...+..||.+|.|+...+.+
T Consensus 106 ~~~~~~~~s--~gf~a~ICikN~GiSgi~V~~t------------------------~~lk~nm~~Gd~ivsrs~rgi~f 159 (366)
T PF04943_consen 106 KGAIYVGNS--AGFVATICIKNEGISGIYVPNT------------------------NFLKHNMEEGDYIVSRSSRGINF 159 (366)
T ss_pred cCccccCCc--cceEEEEEEcCCCeeEEEeCCC------------------------cceEeeeeeCCEEEEeccccccc
Confidence 344445542 3566778899999999999986 35678899999999998887776
Q ss_pred Ec
Q 039441 447 VA 448 (539)
Q Consensus 447 ~n 448 (539)
.-
T Consensus 160 LP 161 (366)
T PF04943_consen 160 LP 161 (366)
T ss_pred cc
Confidence 54
No 236
>PHA02984 hypothetical protein; Provisional
Probab=24.52 E-value=3.1e+02 Score=28.67 Aligned_cols=53 Identities=15% Similarity=0.231 Sum_probs=37.9
Q ss_pred CCEEEEE--EeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcCCCCcEEE
Q 039441 379 ATTIVLV--VEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVASPNEKLLT 456 (539)
Q Consensus 379 A~ei~yV--~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~gne~l~~ 456 (539)
+.|-+|| +.|+..|.+...+ +..+..+.+|+.|.+--+.-|.+... +.+|.+
T Consensus 91 snEy~FvlCl~G~~~I~~~~~~-------------------------~~is~~I~kGeaf~md~~t~h~i~T~-~knl~L 144 (286)
T PHA02984 91 SNEYMFVLCLNGKTSIECFNKG-------------------------SKITNTIKKGEAFTLNLKTKYVTTTK-DKNLHL 144 (286)
T ss_pred eccEEEEEEcCCeEEEEEecCC-------------------------ceeeeEEecCceEEEEccceEEEEeC-CCceEE
Confidence 4455555 4577766666554 36788999999999999999997664 455554
Q ss_pred E
Q 039441 457 V 457 (539)
Q Consensus 457 v 457 (539)
+
T Consensus 145 ~ 145 (286)
T PHA02984 145 A 145 (286)
T ss_pred E
Confidence 4
No 237
>PRK09392 ftrB transcriptional activator FtrB; Provisional
Probab=24.50 E-value=3.5e+02 Score=26.26 Aligned_cols=74 Identities=14% Similarity=0.141 Sum_probs=47.1
Q ss_pred EEEEEEcCCceecceecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeC
Q 039441 360 VTYVEINQGGMMVPHYNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIP 439 (539)
Q Consensus 360 va~v~L~pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVP 439 (539)
+....+++|.++.. =.-.++.+.+|++|.+++.....++ ...-..+.+||+|-..
T Consensus 30 ~~~~~~~~ge~l~~-~g~~~~~~~~v~~G~v~~~~~~~~~------------------------~~~i~~~~~g~~~g~~ 84 (236)
T PRK09392 30 AFLQRFPPGTMLIT-EGEPADFLFVVLDGLVELSASSQDR------------------------ETTLAILRPVSTFILA 84 (236)
T ss_pred cceeecCCCCEEEe-CCCccceEEEEEeCEEEEEEcCCCc------------------------eEEEEEeCCCchhhhH
Confidence 34677888887643 3345789999999999998764332 1233678999987532
Q ss_pred -----CCCeEEEEcCCCCcEEEEEEe
Q 039441 440 -----PGHPIALVASPNEKLLTVGFS 460 (539)
Q Consensus 440 -----aG~~h~i~n~gne~l~~v~F~ 460 (539)
.-+++.+++..+ ..++.+.
T Consensus 85 ~~~~~~~~~~~~~A~~~--~~~~~i~ 108 (236)
T PRK09392 85 AVVLDAPYLMSARTLTR--SRVLMIP 108 (236)
T ss_pred HHhCCCCCceEEEEcCc--eEEEEEe
Confidence 235555666644 4444443
No 238
>PRK13616 lipoprotein LpqB; Provisional
Probab=23.51 E-value=6.3e+02 Score=29.18 Aligned_cols=69 Identities=4% Similarity=0.111 Sum_probs=43.8
Q ss_pred CCCCcccCCCceEEEeCCc-ccccccc--cceeEEEEEE-----c---CCceecceecCCCCEEEEEEeceEEEEEecCC
Q 039441 330 SRKPIYNNNFGRFFEATPK-DYQQLQE--IDAGVTYVEI-----N---QGGMMVPHYNSKATTIVLVVEGRGRFEMGGPL 398 (539)
Q Consensus 330 ~~~p~~sn~~G~i~~~~~~-~fP~L~~--l~isva~v~L-----~---pGgm~~PHwhpnA~ei~yV~~G~g~v~vV~p~ 398 (539)
...|.++++++.+..+... ..-.+.. -.-.+..+.+ . ++++..+-|.|+...|+|++.|+..+..|...
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~ 478 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQT 478 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeC
Confidence 3568888888877666422 1110110 0011111222 2 57899999999999999999999888777764
No 239
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=23.50 E-value=2.3e+02 Score=25.09 Aligned_cols=64 Identities=19% Similarity=0.236 Sum_probs=0.0
Q ss_pred cCCceecceecCCCCEEEEEEe-ceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeE
Q 039441 366 NQGGMMVPHYNSKATTIVLVVE-GRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPI 444 (539)
Q Consensus 366 ~pGgm~~PHwhpnA~ei~yV~~-G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h 444 (539)
++||+..|--+-.-+...-|+- |.|.. ..++ .+....|+.||.+++..+..
T Consensus 21 T~gGIvlpdsakeK~~~g~VvAVG~G~~---~~~g------------------------~~~~~~VkvGD~Vlf~ky~G- 72 (96)
T COG0234 21 TAGGIVLPDSAKEKPQEGEVVAVGPGRR---DENG------------------------ELVPLDVKVGDRVLFGKYAG- 72 (96)
T ss_pred ccCcEEecCccccCCcceEEEEEcccee---cCCC------------------------CEeccccccCCEEEECccCC-
Q ss_pred EEEcCCCCcEEEE
Q 039441 445 ALVASPNEKLLTV 457 (539)
Q Consensus 445 ~i~n~gne~l~~v 457 (539)
..+-.+++.+.++
T Consensus 73 ~evk~dgeeylil 85 (96)
T COG0234 73 TEVKIDGEEYLIL 85 (96)
T ss_pred cEEEECCEEEEEe
No 240
>PRK05137 tolB translocation protein TolB; Provisional
Probab=22.97 E-value=9.7e+02 Score=25.80 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=28.1
Q ss_pred EEEEEEcCCceecceecCCCCEEEEEEece--EEEEEecCCC
Q 039441 360 VTYVEINQGGMMVPHYNSKATTIVLVVEGR--GRFEMGGPLS 399 (539)
Q Consensus 360 va~v~L~pGgm~~PHwhpnA~ei~yV~~G~--g~v~vV~p~g 399 (539)
+..+....+....|.|+|+...|+|+.... ..+.++...+
T Consensus 326 ~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 326 PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 344444466677899999999999987543 4667777643
No 241
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=22.92 E-value=1.1e+02 Score=23.21 Aligned_cols=31 Identities=13% Similarity=0.269 Sum_probs=26.3
Q ss_pred CceecceecCCCC--EEEEEEeceEEEEEecCC
Q 039441 368 GGMMVPHYNSKAT--TIVLVVEGRGRFEMGGPL 398 (539)
Q Consensus 368 Ggm~~PHwhpnA~--ei~yV~~G~g~v~vV~p~ 398 (539)
||++..++.|... .++.+.+..+++.|++.-
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 6777778887665 899999999999999974
No 242
>PF01987 AIM24: Mitochondrial biogenesis AIM24; InterPro: IPR002838 The proteins in this family have no known function.; PDB: 1PG6_A 1YOX_D.
Probab=22.50 E-value=3.6e+02 Score=26.21 Aligned_cols=47 Identities=30% Similarity=0.475 Sum_probs=37.5
Q ss_pred CCCEEEEEEeceEEEEEecCCCCccchhhhhhhhHHHHHHhhhcceeeEEeeeCCCcEEEeCCCCeEEEEcC
Q 039441 378 KATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQEEEEEEESSRELQKISANLSPGVVFIIPPGHPIALVAS 449 (539)
Q Consensus 378 nA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~~~~~e~~~~~y~~~~~~L~~GDV~vVPaG~~h~i~n~ 449 (539)
....+..-+.|+|.+-+...+. .+..+|.+|+-++|..++.+++..+
T Consensus 128 ~~g~~~~~l~G~G~v~l~~~G~-------------------------i~~i~L~~ge~~~Vd~~~lVA~~~~ 174 (215)
T PF01987_consen 128 GEGLFMLKLSGRGTVFLSGYGA-------------------------IYEIDLAPGEEIIVDPGHLVAWSGS 174 (215)
T ss_dssp TS-EEEEEEESSCEEEEEECCS-------------------------EEEEEEE-EEEEEEEGGGEEEEETT
T ss_pred CCCcEEEEEEEEEEEEEEeCCc-------------------------EEEEEccCCceEEEcCCCEEEECCC
Confidence 4456677889999998888653 6778899999999999999998765
No 243
>KOG1816 consensus Ubiquitin fusion-degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.34 E-value=2.8e+02 Score=29.33 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=13.5
Q ss_pred eecCCCcEEEeCCCCeEE
Q 039441 245 FNMEHGDVISVPAGTTYY 262 (539)
Q Consensus 245 ~~v~~GDV~~iPaG~~h~ 262 (539)
..|..||+|.|+=+-..|
T Consensus 144 acLT~gDvi~i~Yn~k~y 161 (308)
T KOG1816|consen 144 ACLTTGDVILINYNEKTY 161 (308)
T ss_pred cccccCCEEEEecCCeEE
Confidence 478999999988654444
No 244
>PF13734 Inhibitor_I69: Spi protease inhibitor; PDB: 1PVJ_A 1DKI_D 2UZJ_A 2JTC_A 4D8E_A 4D8I_A 4D8B_A.
Probab=21.98 E-value=83 Score=27.70 Aligned_cols=21 Identities=29% Similarity=0.574 Sum_probs=14.7
Q ss_pred eCCCCeEEEEecCCCceEEEEE
Q 039441 255 VPAGTTYYLSNQDNVDRLHVAK 276 (539)
Q Consensus 255 iPaG~~h~i~N~g~~e~L~iv~ 276 (539)
.|..+++||+|. ++..++||+
T Consensus 37 ~~~~~~~YI~N~-~~~GFVIVS 57 (96)
T PF13734_consen 37 TPSDTPYYIFND-NNKGFVIVS 57 (96)
T ss_dssp TT-SSSEEEEEE-TTS-EEEEE
T ss_pred CCCCCcEEEEEc-CCCEEEEEE
Confidence 577789999999 566676555
No 245
>PF01982 CTP-dep_RFKase: Domain of unknown function DUF120; InterPro: IPR023602 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents a CTP-dependent riboflavin kinase domain, found primarily in archaea, that catalyses the phosphorylation of riboflavin to form flavin mononucleotide in riboflavin biosynthesis. Its structure resembles a RIFT barrel, structurally similar to but topologically distinct from bacterial and eukaryotic examples []. The N-terminal is a winged helix-turn-helix DNA-binding domain, and the C-terminal half is most similar in sequence to a group of cradle-loop barrels.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2VBV_A 2VBU_A 2VBS_A 2VBT_A 2P3M_A 2OYN_A 3CTA_A.
Probab=21.29 E-value=68 Score=29.50 Aligned_cols=59 Identities=20% Similarity=0.545 Sum_probs=36.2
Q ss_pred eccCcccccccCcceeeEEEeeeCCCeeeccc--ccCCCcEEEEEeceEEEEEEeCCC-ceeeecCCCcEEEe
Q 039441 186 QRFSQKSHLLRGIDNYRLAILEANPSTLVVPH--HSDAETILVLLKGKGVITLVSHER-RESFNMEHGDVISV 255 (539)
Q Consensus 186 ~~f~~~s~~l~gv~~~Rl~il~l~P~~l~lPh--~~dA~~~~yV~~G~g~i~~v~pg~-~~~~~v~~GDV~~i 255 (539)
+.|....+-|-++..|...|.. -+.+++.|- ||+.+ +|-+|.|-. +.+.+|+.||.|.|
T Consensus 58 ~gf~~~~r~fg~v~~~p~~i~~-i~~aiv~P~rT~h~~~----------~lEiIAp~~LR~~L~L~DGD~V~v 119 (121)
T PF01982_consen 58 EGFEDPGRTFGGVKCYPATING-IPGAIVFPERTHHPPD----------ILEIIAPVKLRDTLGLKDGDEVEV 119 (121)
T ss_dssp --EEETTEEE--EEEEEEEECC-EEEEEEEESS-SS-TT----------EEEEE-SS-HHHHTT--TT-EEEE
T ss_pred cCccCCCCcEEeEEEEEEEECC-EEEEEEEecccccCCc----------eEEEEcCcchHhhcCCCCCCEEEE
Confidence 4577777778888888888866 677888887 55444 566777776 45789999999865
No 246
>COG3123 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.24 E-value=2.9e+02 Score=24.11 Aligned_cols=46 Identities=17% Similarity=0.260 Sum_probs=35.1
Q ss_pred cCCCcEEEEEeceEEEEEEeCCCceeeecCCCcEEEeCCCCeEEEEec
Q 039441 219 SDAETILVLLKGKGVITLVSHERRESFNMEHGDVISVPAGTTYYLSNQ 266 (539)
Q Consensus 219 ~dA~~~~yV~~G~g~i~~v~pg~~~~~~v~~GDV~~iPaG~~h~i~N~ 266 (539)
.-++++.-|+.|.. ++..|+..+=....+|.++.||+.+-|.|+=.
T Consensus 39 Ta~~E~Mtvv~Gal--~v~lpgs~dWq~~~~Ge~F~VpgnS~F~lqVa 84 (94)
T COG3123 39 TAAPEEMTVVSGAL--TVLLPGSDDWQVYTAGEVFNVPGNSEFDLQVA 84 (94)
T ss_pred cCCceEEEEEeeEE--EEEcCCCcccEEecCCceEEcCCCCeEEEEEe
Confidence 46788888888764 45567777777788999999999887776643
No 247
>PRK01029 tolB translocation protein TolB; Provisional
Probab=21.05 E-value=8.2e+02 Score=26.63 Aligned_cols=68 Identities=7% Similarity=0.104 Sum_probs=37.9
Q ss_pred CCcccCCCceEEEe-CCcccccccccce-----eEEEEEEcCCceecceecCCCCEEEEEEe--ceEEEEEecCCC
Q 039441 332 KPIYNNNFGRFFEA-TPKDYQQLQEIDA-----GVTYVEINQGGMMVPHYNSKATTIVLVVE--GRGRFEMGGPLS 399 (539)
Q Consensus 332 ~p~~sn~~G~i~~~-~~~~fP~L~~l~i-----sva~v~L~pGgm~~PHwhpnA~ei~yV~~--G~g~v~vV~p~g 399 (539)
.|.+++++..|..+ +....+.|-.+++ ....++-..+....|.|+|+...|+|+.. |...+-+++..+
T Consensus 285 ~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~ 360 (428)
T PRK01029 285 NPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT 360 (428)
T ss_pred CeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC
Confidence 45677766654333 3223333332222 12222223345678999999999999875 344666676653
No 248
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=20.80 E-value=1e+02 Score=33.45 Aligned_cols=85 Identities=14% Similarity=0.220 Sum_probs=47.5
Q ss_pred EEEEc-CCceecce---ecCCCCEEEEEEeceEEEEEecCCCCccchhhhhhhhH----HHHHHhhhcceeeEEeeeCCC
Q 039441 362 YVEIN-QGGMMVPH---YNSKATTIVLVVEGRGRFEMGGPLSSRWSQESQREQQE----EEEEEESSRELQKISANLSPG 433 (539)
Q Consensus 362 ~v~L~-pGgm~~PH---whpnA~ei~yV~~G~g~v~vV~p~gs~~s~~~~~g~~~----~~~~e~~~~~y~~~~~~L~~G 433 (539)
++-+. .|+-..-| |+ +..|..++-|.=+-=++.|.-.. .=..+.|..+ ..---.....+ ..-.=.+|
T Consensus 201 Fvy~Gp~gSwtp~HaDVf~--s~swS~nicG~KrWl~~pP~qe~-~l~dr~gnlp~~~~~~~ld~~~~~~--lei~Qepg 275 (427)
T KOG2131|consen 201 FVYAGPAGSWTPFHADVFH--SPSWSVNICGRKRWLLYPPEQEQ-TLADRYGNLPLPSWITKLDLFRGPL--LEIFQEPG 275 (427)
T ss_pred EEEeccCCCCCccchhhhc--CCcceeeeecceeEEEeChHHhh-hhhhhccCcCCccccccccccccch--hhhhccCC
Confidence 45556 45555555 53 78899999999998888885210 0000000000 00000000111 11223799
Q ss_pred cEEEeCCCCeEEEEcCCC
Q 039441 434 VVFIIPPGHPIALVASPN 451 (539)
Q Consensus 434 DV~vVPaG~~h~i~n~gn 451 (539)
.+++||.|+-|-+.|.++
T Consensus 276 e~VFvPsGW~hQV~NL~d 293 (427)
T KOG2131|consen 276 ETVFVPSGWHHQVLNLGD 293 (427)
T ss_pred ceeeccCccccccccccc
Confidence 999999999999999876
Done!