Query 039443
Match_columns 137
No_of_seqs 126 out of 676
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 09:41:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039443.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039443hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00353 HLH helix loop heli 99.5 2.2E-14 4.7E-19 88.8 6.3 49 4-52 1-52 (53)
2 cd00083 HLH Helix-loop-helix d 99.5 3.1E-14 6.8E-19 89.7 6.1 50 2-51 7-59 (60)
3 PF00010 HLH: Helix-loop-helix 99.5 2.9E-14 6.3E-19 89.3 5.5 47 2-48 4-55 (55)
4 KOG1318 Helix loop helix trans 98.7 1.7E-08 3.8E-13 86.0 6.3 53 2-54 236-292 (411)
5 KOG4029 Transcription factor H 98.5 8.6E-08 1.9E-12 75.7 3.5 56 2-57 112-171 (228)
6 PLN03217 transcription factor 98.4 7.5E-07 1.6E-11 60.9 6.5 53 12-64 20-78 (93)
7 KOG3960 Myogenic helix-loop-he 98.3 1.7E-06 3.7E-11 69.7 6.9 58 4-61 123-182 (284)
8 KOG1319 bHLHZip transcription 98.2 2.7E-06 5.8E-11 66.1 5.7 60 2-61 65-131 (229)
9 KOG3561 Aryl-hydrocarbon recep 98.2 2E-06 4.4E-11 78.6 5.3 49 2-50 23-75 (803)
10 KOG2483 Upstream transcription 98.2 6.6E-06 1.4E-10 65.7 7.2 60 2-61 62-124 (232)
11 KOG0561 bHLH transcription fac 98.2 1.9E-06 4.2E-11 71.0 3.9 51 4-54 65-117 (373)
12 KOG4304 Transcriptional repres 98.1 3.3E-06 7.1E-11 68.2 3.6 51 2-52 35-93 (250)
13 cd04895 ACT_ACR_1 ACT domain-c 97.5 0.00077 1.7E-08 44.7 7.5 43 86-128 6-48 (72)
14 cd04897 ACT_ACR_3 ACT domain-c 97.4 0.0014 3E-08 43.8 7.5 44 86-129 6-49 (75)
15 KOG3898 Transcription factor N 97.3 0.00013 2.8E-09 59.0 1.9 49 3-51 76-127 (254)
16 cd04927 ACT_ACR-like_2 Second 97.2 0.0034 7.3E-08 41.4 7.7 42 87-128 6-48 (76)
17 cd04900 ACT_UUR-like_1 ACT dom 97.2 0.0029 6.2E-08 41.1 7.1 46 82-128 3-49 (73)
18 cd04925 ACT_ACR_2 ACT domain-c 97.1 0.0047 1E-07 40.4 7.6 43 86-128 5-47 (74)
19 KOG2588 Predicted DNA-binding 97.0 0.00033 7.1E-09 65.0 2.3 58 2-59 279-337 (953)
20 cd04926 ACT_ACR_4 C-terminal 97.0 0.0075 1.6E-07 39.1 7.8 46 82-128 3-48 (72)
21 cd04896 ACT_ACR-like_3 ACT dom 96.9 0.0064 1.4E-07 40.6 7.1 42 87-128 6-49 (75)
22 KOG4447 Transcription factor T 96.7 0.00077 1.7E-08 50.9 1.6 50 2-51 81-132 (173)
23 cd04899 ACT_ACR-UUR-like_2 C-t 96.7 0.022 4.8E-07 35.8 8.0 45 87-131 6-50 (70)
24 cd04928 ACT_TyrKc Uncharacteri 96.5 0.02 4.3E-07 37.6 7.2 49 82-131 3-52 (68)
25 KOG4395 Transcription factor A 96.4 0.0062 1.3E-07 49.4 4.9 50 3-52 178-230 (285)
26 PF13740 ACT_6: ACT domain; PD 96.1 0.055 1.2E-06 35.4 7.5 48 83-130 4-51 (76)
27 cd04873 ACT_UUR-ACR-like ACT d 95.6 0.15 3.1E-06 31.6 7.6 45 87-131 6-50 (70)
28 PRK00275 glnD PII uridylyl-tra 95.4 0.12 2.7E-06 48.4 9.5 62 68-129 800-862 (895)
29 PRK05007 PII uridylyl-transfer 95.1 0.11 2.4E-06 48.6 8.4 60 69-128 795-855 (884)
30 PF13291 ACT_4: ACT domain; PD 95.0 0.33 7.2E-06 31.5 8.4 43 89-131 14-58 (80)
31 PRK04374 PII uridylyl-transfer 95.0 0.18 3.8E-06 47.3 9.4 60 69-128 783-843 (869)
32 KOG3910 Helix loop helix trans 95.0 0.026 5.7E-07 49.8 3.6 54 2-55 529-586 (632)
33 PF01842 ACT: ACT domain; Int 95.0 0.27 5.8E-06 30.0 7.4 32 88-119 7-38 (66)
34 cd04893 ACT_GcvR_1 ACT domains 94.6 0.27 5.8E-06 32.2 7.1 47 85-131 5-51 (77)
35 PRK03059 PII uridylyl-transfer 94.5 0.27 5.7E-06 46.0 9.1 59 69-127 773-832 (856)
36 KOG3559 Transcriptional regula 94.4 0.042 9.1E-07 47.7 3.4 41 6-46 8-52 (598)
37 TIGR01693 UTase_glnD [Protein- 94.3 2.1 4.5E-05 39.9 14.5 62 69-131 655-719 (850)
38 PRK03381 PII uridylyl-transfer 94.3 0.32 6.9E-06 45.0 9.2 61 69-129 694-755 (774)
39 KOG3558 Hypoxia-inducible fact 94.2 0.039 8.5E-07 50.3 2.9 40 6-45 53-96 (768)
40 cd04869 ACT_GcvR_2 ACT domains 94.1 0.25 5.4E-06 31.9 6.1 46 86-131 4-55 (81)
41 PRK05092 PII uridylyl-transfer 93.9 0.48 1E-05 44.6 9.7 61 69-129 830-891 (931)
42 cd04887 ACT_MalLac-Enz ACT_Mal 93.8 0.51 1.1E-05 29.8 7.1 45 88-132 6-51 (74)
43 PRK01759 glnD PII uridylyl-tra 93.8 0.31 6.7E-06 45.5 8.2 60 69-128 770-830 (854)
44 PRK00194 hypothetical protein; 93.7 0.28 6E-06 32.6 5.8 48 84-131 6-53 (90)
45 PRK03381 PII uridylyl-transfer 93.5 0.59 1.3E-05 43.3 9.4 60 69-129 587-647 (774)
46 cd04870 ACT_PSP_1 CT domains f 93.5 0.52 1.1E-05 30.4 6.7 47 85-131 3-49 (75)
47 cd04886 ACT_ThrD-II-like C-ter 93.4 0.65 1.4E-05 28.4 6.9 43 89-131 6-53 (73)
48 COG2844 GlnD UTP:GlnB (protein 93.3 0.27 5.9E-06 45.8 6.8 61 69-129 778-839 (867)
49 cd04872 ACT_1ZPV ACT domain pr 93.1 0.31 6.8E-06 32.4 5.3 47 85-131 5-51 (88)
50 PRK01759 glnD PII uridylyl-tra 92.7 0.92 2E-05 42.5 9.5 59 69-128 664-725 (854)
51 TIGR01693 UTase_glnD [Protein- 92.6 0.71 1.5E-05 43.0 8.5 62 69-130 766-828 (850)
52 cd04880 ACT_AAAH-PDT-like ACT 91.5 1.3 2.9E-05 28.2 6.7 43 89-131 7-50 (75)
53 cd04875 ACT_F4HF-DF N-terminal 91.4 1 2.2E-05 28.7 6.1 33 85-117 3-35 (74)
54 cd04888 ACT_PheB-BS C-terminal 91.1 1.7 3.7E-05 27.3 6.9 44 89-132 8-52 (76)
55 PRK00275 glnD PII uridylyl-tra 91.1 1.1 2.3E-05 42.3 7.9 51 79-130 703-754 (895)
56 PRK05007 PII uridylyl-transfer 91.0 1.8 4E-05 40.6 9.5 59 69-128 688-749 (884)
57 PRK03059 PII uridylyl-transfer 90.9 1.2 2.5E-05 41.8 8.0 50 79-129 677-727 (856)
58 PRK05092 PII uridylyl-transfer 90.7 1.9 4.1E-05 40.7 9.3 60 69-129 719-781 (931)
59 cd04876 ACT_RelA-SpoT ACT dom 90.6 2.2 4.7E-05 24.9 6.6 43 88-130 5-48 (71)
60 KOG3560 Aryl-hydrocarbon recep 89.6 0.33 7.2E-06 43.6 3.2 37 9-45 35-75 (712)
61 cd04877 ACT_TyrR N-terminal AC 89.5 1.4 2.9E-05 28.3 5.4 38 88-126 7-44 (74)
62 cd04905 ACT_CM-PDT C-terminal 89.5 3.3 7.1E-05 26.8 7.2 44 89-132 9-53 (80)
63 PRK04435 hypothetical protein; 89.4 3.2 7E-05 30.6 7.9 55 77-132 66-121 (147)
64 PRK04374 PII uridylyl-transfer 89.2 2.1 4.6E-05 40.2 8.3 50 79-129 689-739 (869)
65 cd04874 ACT_Af1403 N-terminal 88.3 4 8.7E-05 24.7 6.9 38 88-125 7-45 (72)
66 cd04882 ACT_Bt0572_2 C-termina 87.3 2 4.3E-05 26.0 4.9 39 89-127 7-47 (65)
67 cd04879 ACT_3PGDH-like ACT_3PG 87.0 3.4 7.3E-05 24.8 5.8 40 88-127 6-47 (71)
68 cd04902 ACT_3PGDH-xct C-termin 85.4 2.8 6.1E-05 25.9 4.9 43 87-129 5-49 (73)
69 cd04904 ACT_AAAH ACT domain of 85.3 3.5 7.7E-05 26.6 5.5 43 89-131 8-51 (74)
70 cd04889 ACT_PDH-BS-like C-term 84.7 4.1 8.9E-05 24.3 5.3 41 89-129 6-47 (56)
71 KOG4447 Transcription factor T 84.6 0.73 1.6E-05 35.0 2.1 46 4-49 27-74 (173)
72 cd04908 ACT_Bt0572_1 N-termina 83.9 4.2 9E-05 25.3 5.2 38 90-129 10-47 (66)
73 cd02116 ACT ACT domains are co 83.2 5.6 0.00012 21.6 6.2 30 89-118 6-35 (60)
74 cd04903 ACT_LSD C-terminal ACT 83.1 7.3 0.00016 23.4 6.0 39 88-126 6-46 (71)
75 cd04931 ACT_PAH ACT domain of 81.5 7.4 0.00016 26.5 6.0 44 89-132 22-66 (90)
76 cd04901 ACT_3PGDH C-terminal A 81.2 1.3 2.8E-05 27.4 2.0 44 86-129 4-47 (69)
77 cd04929 ACT_TPH ACT domain of 80.7 9.1 0.0002 25.0 6.0 43 89-131 8-51 (74)
78 cd04884 ACT_CBS C-terminal ACT 80.6 8.2 0.00018 24.2 5.7 28 90-117 8-35 (72)
79 cd04878 ACT_AHAS N-terminal AC 80.2 10 0.00022 22.7 6.8 42 88-129 7-50 (72)
80 PRK07334 threonine dehydratase 78.4 16 0.00034 31.0 8.3 44 88-131 333-381 (403)
81 PRK08577 hypothetical protein; 78.2 22 0.00048 25.5 8.3 44 89-132 64-109 (136)
82 cd04881 ACT_HSDH-Hom ACT_HSDH_ 76.6 15 0.00031 22.5 6.4 41 89-129 8-50 (79)
83 PF13710 ACT_5: ACT domain; PD 75.2 17 0.00038 22.8 6.0 40 90-129 1-42 (63)
84 PRK06027 purU formyltetrahydro 74.1 21 0.00047 29.1 7.8 46 84-129 9-56 (286)
85 cd04868 ACT_AK-like ACT domain 73.6 14 0.00031 20.9 5.6 36 90-125 12-47 (60)
86 cd04930 ACT_TH ACT domain of t 71.6 14 0.0003 26.3 5.4 43 89-131 49-92 (115)
87 cd04922 ACT_AKi-HSDH-ThrA_2 AC 70.4 21 0.00045 21.4 5.8 36 90-125 13-48 (66)
88 COG2844 GlnD UTP:GlnB (protein 70.0 17 0.00037 34.4 6.8 55 73-128 677-732 (867)
89 cd04919 ACT_AK-Hom3_2 ACT doma 69.6 22 0.00048 21.5 5.9 36 90-125 13-48 (66)
90 PRK11589 gcvR glycine cleavage 68.9 11 0.00023 29.2 4.6 45 83-127 10-54 (190)
91 PRK10872 relA (p)ppGpp synthet 66.6 50 0.0011 30.9 9.2 46 86-131 671-718 (743)
92 cd04890 ACT_AK-like_1 ACT doma 66.3 21 0.00046 21.5 4.8 36 90-127 12-47 (62)
93 COG3830 ACT domain-containing 65.3 8.2 0.00018 26.7 3.0 47 83-129 5-51 (90)
94 cd04883 ACT_AcuB C-terminal AC 64.5 30 0.00066 21.2 7.3 40 90-129 10-51 (72)
95 TIGR00691 spoT_relA (p)ppGpp s 64.2 39 0.00084 31.1 8.0 45 87-131 616-661 (683)
96 TIGR00119 acolac_sm acetolacta 63.7 33 0.00072 25.8 6.3 41 89-129 9-51 (157)
97 TIGR00655 PurU formyltetrahydr 63.4 51 0.0011 26.9 7.8 47 85-131 4-52 (280)
98 cd04909 ACT_PDH-BS C-terminal 62.7 33 0.00071 21.0 6.2 30 88-117 8-37 (69)
99 PHA03386 P10 fibrous body prot 60.7 19 0.00042 25.0 4.1 32 31-62 1-32 (94)
100 PRK11895 ilvH acetolactate syn 59.9 36 0.00077 25.7 5.9 41 89-129 10-52 (161)
101 cd04892 ACT_AK-like_2 ACT doma 59.3 33 0.00071 19.8 5.7 27 90-116 12-38 (65)
102 PF14992 TMCO5: TMCO5 family 58.6 19 0.00041 29.8 4.5 28 34-61 143-170 (280)
103 PRK11092 bifunctional (p)ppGpp 57.8 61 0.0013 30.1 8.0 45 87-131 632-677 (702)
104 cd04918 ACT_AK1-AT_2 ACT domai 55.0 46 0.00099 20.5 5.0 36 90-125 12-47 (65)
105 cd04912 ACT_AKiii-LysC-EC-like 54.5 53 0.0012 20.8 6.1 36 90-127 13-48 (75)
106 TIGR02263 benz_CoA_red_C benzo 54.4 44 0.00096 28.2 6.2 87 10-114 174-266 (380)
107 PF09849 DUF2076: Uncharacteri 53.9 60 0.0013 26.3 6.6 50 11-60 6-73 (247)
108 PRK11152 ilvM acetolactate syn 53.8 60 0.0013 21.4 5.6 38 90-127 12-51 (76)
109 cd04935 ACT_AKiii-DAPDC_1 ACT 53.3 47 0.001 21.4 5.0 37 90-128 13-49 (75)
110 PRK13011 formyltetrahydrofolat 52.1 75 0.0016 26.0 7.0 43 87-130 13-56 (286)
111 PF00170 bZIP_1: bZIP transcri 50.4 28 0.00062 21.7 3.5 22 41-62 25-46 (64)
112 cd04932 ACT_AKiii-LysC-EC_1 AC 50.2 67 0.0015 20.7 5.5 36 90-127 13-48 (75)
113 cd04916 ACT_AKiii-YclM-BS_2 AC 50.1 53 0.0012 19.5 5.8 35 90-124 13-47 (66)
114 PRK11899 prephenate dehydratas 50.1 72 0.0016 26.1 6.6 44 89-132 202-246 (279)
115 PF13224 DUF4032: Domain of un 49.3 36 0.00079 26.0 4.4 41 93-133 19-59 (165)
116 PF06005 DUF904: Protein of un 48.8 44 0.00095 21.9 4.2 27 36-62 12-38 (72)
117 PF13840 ACT_7: ACT domain ; P 48.7 35 0.00075 21.4 3.7 24 90-113 19-42 (65)
118 PF02344 Myc-LZ: Myc leucine z 48.6 22 0.00047 20.0 2.3 16 8-23 14-29 (32)
119 smart00338 BRLZ basic region l 48.5 30 0.00065 21.6 3.4 22 41-62 25-46 (65)
120 PRK11898 prephenate dehydratas 47.3 70 0.0015 26.0 6.1 43 90-132 206-249 (283)
121 PF09789 DUF2353: Uncharacteri 47.0 95 0.0021 26.2 6.9 38 26-63 63-100 (319)
122 cd04933 ACT_AK1-AT_1 ACT domai 46.6 68 0.0015 21.1 5.0 35 90-126 13-47 (78)
123 cd04921 ACT_AKi-HSDH-ThrA-like 46.4 69 0.0015 20.0 4.9 35 90-124 13-47 (80)
124 cd04923 ACT_AK-LysC-DapG-like_ 45.1 62 0.0013 18.8 5.8 26 90-115 12-37 (63)
125 PRK06737 acetolactate synthase 44.4 84 0.0018 20.8 5.1 39 90-128 11-51 (76)
126 cd04924 ACT_AK-Arch_2 ACT doma 43.4 70 0.0015 18.9 5.9 35 90-124 13-47 (66)
127 PF02120 Flg_hook: Flagellar h 43.3 87 0.0019 20.0 6.1 47 71-117 28-79 (85)
128 COG4492 PheB ACT domain-contai 42.8 1.2E+02 0.0025 22.8 6.1 60 71-130 61-122 (150)
129 cd04891 ACT_AK-LysC-DapG-like_ 42.5 65 0.0014 18.3 5.7 28 89-116 9-36 (61)
130 cd04885 ACT_ThrD-I Tandem C-te 42.2 83 0.0018 19.4 5.5 28 89-117 6-33 (68)
131 PRK10622 pheA bifunctional cho 42.1 1E+02 0.0023 26.3 6.6 44 89-132 305-349 (386)
132 cd04913 ACT_AKii-LysC-BS-like_ 41.9 76 0.0017 18.9 5.9 27 89-115 10-36 (75)
133 COG3074 Uncharacterized protei 41.7 58 0.0012 21.7 3.9 27 37-63 13-39 (79)
134 cd04934 ACT_AK-Hom3_1 CT domai 41.4 95 0.0021 19.9 5.9 35 90-126 13-47 (73)
135 PRK00227 glnD PII uridylyl-tra 41.4 1.3E+02 0.0028 28.0 7.5 47 81-128 547-593 (693)
136 PF14689 SPOB_a: Sensor_kinase 39.8 52 0.0011 20.6 3.5 41 8-55 17-57 (62)
137 cd04915 ACT_AK-Ectoine_2 ACT d 39.8 90 0.002 19.4 4.6 34 90-123 13-46 (66)
138 PRK13010 purU formyltetrahydro 39.0 1E+02 0.0022 25.3 5.9 42 83-124 11-54 (289)
139 PF10393 Matrilin_ccoil: Trime 38.5 90 0.0019 18.9 4.1 28 35-62 16-43 (47)
140 cd04937 ACT_AKi-DapG-BS_2 ACT 38.1 94 0.002 18.9 5.7 24 90-113 13-36 (64)
141 PF05687 DUF822: Plant protein 37.8 33 0.00072 25.8 2.6 23 3-25 15-37 (150)
142 COG0317 SpoT Guanosine polypho 37.2 1.1E+02 0.0024 28.5 6.4 45 87-131 633-678 (701)
143 TIGR01834 PHA_synth_III_E poly 36.6 99 0.0021 26.1 5.5 46 14-63 272-317 (320)
144 PRK08198 threonine dehydratase 36.0 2.6E+02 0.0057 23.5 8.4 42 90-131 336-382 (404)
145 cd04936 ACT_AKii-LysC-BS-like_ 35.7 91 0.002 18.1 5.8 26 90-115 12-37 (63)
146 PF08946 Osmo_CC: Osmosensory 35.2 62 0.0013 19.6 3.0 28 36-63 9-40 (46)
147 PF05531 NPV_P10: Nucleopolyhe 34.6 1.2E+02 0.0027 20.2 4.7 32 31-63 1-32 (75)
148 COG1259 Uncharacterized conser 33.7 1E+02 0.0022 23.3 4.7 42 91-132 57-99 (151)
149 cd09235 V_Alix Middle V-domain 33.5 1E+02 0.0023 25.6 5.2 44 19-63 169-212 (339)
150 cd09236 V_AnPalA_UmRIM20_like 33.4 1E+02 0.0023 25.7 5.2 46 18-63 171-216 (353)
151 TIGR01268 Phe4hydrox_tetr phen 32.6 1.3E+02 0.0028 26.5 5.7 43 89-131 24-67 (436)
152 COG0216 PrfA Protein chain rel 32.0 2.3E+02 0.005 24.4 7.0 84 32-120 73-162 (363)
153 PRK15422 septal ring assembly 31.1 1.1E+02 0.0025 20.6 4.1 28 36-63 12-39 (79)
154 PF04508 Pox_A_type_inc: Viral 30.6 87 0.0019 16.3 2.7 16 44-59 3-18 (23)
155 PF03791 KNOX2: KNOX2 domain ; 30.5 76 0.0017 19.7 3.0 21 35-55 31-51 (52)
156 PF02577 DNase-RNase: Bifuncti 30.4 2.1E+02 0.0045 20.5 6.2 31 99-129 59-90 (135)
157 PRK08818 prephenate dehydrogen 29.9 3.5E+02 0.0076 23.0 9.2 28 90-117 305-332 (370)
158 cd01917 ACS_2 Acetyl-CoA synth 29.8 2.9E+02 0.0064 23.0 7.1 101 11-113 53-161 (287)
159 PF14193 DUF4315: Domain of un 29.6 1.3E+02 0.0027 20.4 4.2 27 37-63 10-36 (83)
160 PF10737 GerPC: Spore germinat 29.1 78 0.0017 24.4 3.4 21 44-64 1-21 (176)
161 PF13887 MRF_C1: Myelin gene r 28.9 1.2E+02 0.0026 17.4 3.8 32 31-62 3-34 (36)
162 PRK11589 gcvR glycine cleavage 28.8 1.8E+02 0.004 22.4 5.5 46 86-131 100-149 (190)
163 PRK11020 hypothetical protein; 28.4 1.6E+02 0.0035 21.3 4.7 54 7-60 3-56 (118)
164 PRK06382 threonine dehydratase 28.1 1.7E+02 0.0036 24.9 5.7 41 90-130 339-384 (406)
165 PF13399 LytR_C: LytR cell env 27.9 1.6E+02 0.0035 19.0 4.5 36 80-115 3-38 (90)
166 PF09006 Surfac_D-trimer: Lung 27.7 1E+02 0.0022 18.7 3.1 20 44-63 1-20 (46)
167 CHL00100 ilvH acetohydroxyacid 27.3 2.5E+02 0.0054 21.4 6.0 30 88-117 9-38 (174)
168 PF08826 DMPK_coil: DMPK coile 27.2 1.7E+02 0.0037 18.6 4.5 28 34-61 31-58 (61)
169 PRK13562 acetolactate synthase 26.2 1.9E+02 0.0041 19.6 4.6 39 90-128 11-51 (84)
170 KOG3582 Mlx interactors and re 25.6 16 0.00035 34.0 -0.9 58 1-58 653-715 (856)
171 PRK05771 V-type ATP synthase s 25.3 3.7E+02 0.008 24.3 7.6 20 8-27 49-68 (646)
172 smart00596 PRE_C2HC PRE_C2HC d 24.8 2.1E+02 0.0045 18.8 4.6 24 96-119 2-25 (69)
173 PF06305 DUF1049: Protein of u 24.0 91 0.002 19.2 2.6 17 44-60 50-66 (68)
174 TIGR01270 Trp_5_monoox tryptop 23.9 1.9E+02 0.0042 25.7 5.3 42 89-130 39-82 (464)
175 COG2061 ACT-domain-containing 23.9 1.1E+02 0.0024 23.4 3.4 43 89-131 13-58 (170)
176 COG0077 PheA Prephenate dehydr 23.5 3.3E+02 0.0071 22.5 6.3 43 90-132 203-246 (279)
177 KOG3501 Molecular chaperone Pr 22.9 2.2E+02 0.0047 20.4 4.5 33 30-62 62-94 (114)
178 KOG1748 Acyl carrier protein/N 22.6 48 0.001 24.4 1.2 20 29-48 108-127 (131)
179 PF02370 M: M protein repeat; 22.3 1.3E+02 0.0027 15.3 2.9 16 45-60 4-19 (21)
180 TIGR01127 ilvA_1Cterm threonin 21.9 4.7E+02 0.01 21.7 8.0 41 90-130 314-359 (380)
181 PF12180 EABR: TSG101 and ALIX 21.4 1.1E+02 0.0024 17.5 2.2 13 42-54 23-35 (35)
182 COG1076 DjlA DnaJ-domain-conta 21.2 99 0.0021 23.2 2.7 51 8-59 121-171 (174)
183 PF08269 Cache_2: Cache domain 21.0 1.5E+02 0.0032 19.4 3.3 38 7-44 5-48 (95)
184 KOG1854 Mitochondrial inner me 20.7 3E+02 0.0064 25.6 5.9 46 6-55 284-338 (657)
185 PRK00341 hypothetical protein; 20.7 2.7E+02 0.0059 18.8 4.6 44 88-131 24-70 (91)
186 COG3879 Uncharacterized protei 20.6 3.9E+02 0.0085 21.8 6.1 22 92-113 138-159 (247)
187 KOG3155 Actin-related protein 20.6 77 0.0017 24.3 1.9 14 32-45 37-50 (173)
188 COG4747 ACT domain-containing 20.2 3.7E+02 0.0079 19.9 5.9 31 90-120 12-42 (142)
189 PF05088 Bac_GDH: Bacterial NA 20.1 5E+02 0.011 26.7 7.8 51 81-132 490-545 (1528)
No 1
>smart00353 HLH helix loop helix domain.
Probab=99.54 E-value=2.2e-14 Score=88.78 Aligned_cols=49 Identities=39% Similarity=0.625 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCC---CCCCCHHhHHHHHHHHHHHHHHHHH
Q 039443 4 NIKEKHRRTHMKDLISQLASLIPS---SSKLSMPEILDEATSYITHLQKNKE 52 (137)
Q Consensus 4 ~~~ER~RR~~mn~~~~~Lrsl~P~---~~k~~k~~il~~Ai~YIk~L~~~v~ 52 (137)
|..||+||..||+.|..|++++|. ..|+||++||..|++||+.|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999995 6799999999999999999999875
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.52 E-value=3.1e-14 Score=89.71 Aligned_cols=50 Identities=40% Similarity=0.628 Sum_probs=47.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCC---CCCCHHhHHHHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPSS---SKLSMPEILDEATSYITHLQKNK 51 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~~---~k~~k~~il~~Ai~YIk~L~~~v 51 (137)
.|+..||.||..||+.|..|++++|.. .|+||++||..|++||+.|++.+
T Consensus 7 ~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 7 AHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 599999999999999999999999995 89999999999999999999875
No 3
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.51 E-value=2.9e-14 Score=89.28 Aligned_cols=47 Identities=40% Similarity=0.662 Sum_probs=44.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCC-----CCCCHHhHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPSS-----SKLSMPEILDEATSYITHLQ 48 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~~-----~k~~k~~il~~Ai~YIk~L~ 48 (137)
.|+..||.||..||+.|..|+.+||.. .|+||++||..||+||++||
T Consensus 4 ~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 4 KHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 599999999999999999999999984 78999999999999999997
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.75 E-value=1.7e-08 Score=85.95 Aligned_cols=53 Identities=32% Similarity=0.483 Sum_probs=48.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC----CCCCCHHhHHHHHHHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS----SSKLSMPEILDEATSYITHLQKNKESL 54 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~----~~k~~k~~il~~Ai~YIk~L~~~v~~L 54 (137)
+||++||+||..+|+++-.|..|||. ..|+.|..||..+++||+.|++..++.
T Consensus 236 ~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 236 NHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999998 368889999999999999999877733
No 5
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=98.50 E-value=8.6e-08 Score=75.75 Aligned_cols=56 Identities=38% Similarity=0.472 Sum_probs=50.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC----CCCCCHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS----SSKLSMPEILDEATSYITHLQKNKESLERR 57 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~----~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~ 57 (137)
.+|++||+|-+.+|..|..||.++|. ..|++|.++|..||.||+.|++-++.-+.-
T Consensus 112 ~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 112 ARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 57899999999999999999999997 468999999999999999999988775543
No 6
>PLN03217 transcription factor ATBS1; Provisional
Probab=98.45 E-value=7.5e-07 Score=60.91 Aligned_cols=53 Identities=30% Similarity=0.557 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCCC------CCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 039443 12 THMKDLISQLASLIPS------SSKLSMPEILDEATSYITHLQKNKESLERRRALLKEE 64 (137)
Q Consensus 12 ~~mn~~~~~Lrsl~P~------~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~~ 64 (137)
.+|+++.++|+.|+|. .+|.+-+.+|.|+++||+.|+..++.|.++..+|...
T Consensus 20 dqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 20 DQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6899999999999997 4678899999999999999999999999999888765
No 7
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=98.32 E-value=1.7e-06 Score=69.70 Aligned_cols=58 Identities=22% Similarity=0.331 Sum_probs=50.6
Q ss_pred cHHHHHHHHHHHHHHHHH-HhcCCC-CCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039443 4 NIKEKHRRTHMKDLISQL-ASLIPS-SSKLSMPEILDEATSYITHLQKNKESLERRRALL 61 (137)
Q Consensus 4 ~~~ER~RR~~mn~~~~~L-rsl~P~-~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l 61 (137)
-++||+|=+|+|+.|..| |.-.|+ ..++.|++||..||.||..||.-++++.+....+
T Consensus 123 TMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 123 TMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 478999999999999999 555666 6789999999999999999999999998865544
No 8
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.22 E-value=2.7e-06 Score=66.12 Aligned_cols=60 Identities=32% Similarity=0.451 Sum_probs=51.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC------CC-CCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS------SS-KLSMPEILDEATSYITHLQKNKESLERRRALL 61 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~------~~-k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l 61 (137)
.|--.||+||.-+|.-|..|..|||. .+ |++|+-||-.+|+||..|.....+-+.+...|
T Consensus 65 aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~L 131 (229)
T KOG1319|consen 65 AHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVSTL 131 (229)
T ss_pred HHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999999999999999996 23 89999999999999999988877766655443
No 9
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.20 E-value=2e-06 Score=78.60 Aligned_cols=49 Identities=27% Similarity=0.432 Sum_probs=46.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC----CCCCCHHhHHHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS----SSKLSMPEILDEATSYITHLQKN 50 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~----~~k~~k~~il~~Ai~YIk~L~~~ 50 (137)
+|+.+||+||++||..+..|.++||. ..|+||..||..||.+|+.+++.
T Consensus 23 ~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 23 NRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 68999999999999999999999998 48999999999999999999875
No 10
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.17 E-value=6.6e-06 Score=65.73 Aligned_cols=60 Identities=30% Similarity=0.400 Sum_probs=51.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC--CCCCC-HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS--SSKLS-MPEILDEATSYITHLQKNKESLERRRALL 61 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~--~~k~~-k~~il~~Ai~YIk~L~~~v~~L~~~k~~l 61 (137)
.||+-||+||.++++.|..|+-+||. ..+.. ..+||..|..||+.|+.+..+.+...+.+
T Consensus 62 ~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l 124 (232)
T KOG2483|consen 62 HHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDL 124 (232)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHH
Confidence 59999999999999999999999998 23333 69999999999999998877777655544
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=98.15 E-value=1.9e-06 Score=71.04 Aligned_cols=51 Identities=31% Similarity=0.512 Sum_probs=45.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCC--CCCCCHHhHHHHHHHHHHHHHHHHHHH
Q 039443 4 NIKEKHRRTHMKDLISQLASLIPS--SSKLSMPEILDEATSYITHLQKNKESL 54 (137)
Q Consensus 4 ~~~ER~RR~~mn~~~~~Lrsl~P~--~~k~~k~~il~~Ai~YIk~L~~~v~~L 54 (137)
|--||+|.+-+|.-|.+||+|+|. ..|++|+-||..+.+||.+|+..--+|
T Consensus 65 NsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 65 NSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred cchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 456999999999999999999998 689999999999999999998765443
No 12
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.07 E-value=3.3e-06 Score=68.16 Aligned_cols=51 Identities=29% Similarity=0.549 Sum_probs=45.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC--------CCCCCHHhHHHHHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS--------SSKLSMPEILDEATSYITHLQKNKE 52 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~--------~~k~~k~~il~~Ai~YIk~L~~~v~ 52 (137)
.|-+.||+||.+||..+..|+.|||. .+|+.|++||.-|++|++.|+..-.
T Consensus 35 ~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~~ 93 (250)
T KOG4304|consen 35 RKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQQ 93 (250)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcccc
Confidence 46688999999999999999999996 3799999999999999999986543
No 13
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.51 E-value=0.00077 Score=44.72 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=38.9
Q ss_pred EecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEE
Q 039443 86 ICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSK 128 (137)
Q Consensus 86 ~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~ak 128 (137)
+.+.+++|+|.+|..+|.++||+|..|.+++.|+++.-+|.+.
T Consensus 6 v~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~ 48 (72)
T cd04895 6 VDSARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVT 48 (72)
T ss_pred EEECCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEE
Confidence 3466899999999999999999999999999999988877775
No 14
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.38 E-value=0.0014 Score=43.84 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=39.4
Q ss_pred EecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEe
Q 039443 86 ICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKV 129 (137)
Q Consensus 86 ~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv 129 (137)
+.+..+||+|.+|..+|-++|++|.+|.+++.|+++.-+|.+.=
T Consensus 6 V~~~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d 49 (75)
T cd04897 6 VQCRDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRH 49 (75)
T ss_pred EEeCCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEc
Confidence 44678999999999999999999999999999999987777753
No 15
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=97.28 E-value=0.00013 Score=58.98 Aligned_cols=49 Identities=33% Similarity=0.463 Sum_probs=44.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCC---CCCCCHHhHHHHHHHHHHHHHHHH
Q 039443 3 RNIKEKHRRTHMKDLISQLASLIPS---SSKLSMPEILDEATSYITHLQKNK 51 (137)
Q Consensus 3 h~~~ER~RR~~mn~~~~~Lrsl~P~---~~k~~k~~il~~Ai~YIk~L~~~v 51 (137)
=|..||+|...+|+.|..||.++|. ..|++|..++.-|-+||..|.+-.
T Consensus 76 aNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 76 ANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred ccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 3789999999999999999999995 789999999999999999988643
No 16
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.18 E-value=0.0034 Score=41.44 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=37.9
Q ss_pred ecCCCcchHHHHHHHHHhCCcEEEEEEEee-eCCeEEEEEEEE
Q 039443 87 CGSNRNFMFHEIISVLEEGAAEVINVTQFN-SGDRVIFSVLSK 128 (137)
Q Consensus 87 ~~~~~~~~L~~il~~Le~~~L~V~~a~~s~-~~~~v~~ti~ak 128 (137)
++.+++|+|.++..+|..+|++|++|.+++ .|+.++-+|.+.
T Consensus 6 ~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~ 48 (76)
T cd04927 6 FCSDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFIT 48 (76)
T ss_pred EECCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEe
Confidence 355899999999999999999999999996 799999888885
No 17
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.17 E-value=0.0029 Score=41.10 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=38.8
Q ss_pred eEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeee-CCeEEEEEEEE
Q 039443 82 EVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNS-GDRVIFSVLSK 128 (137)
Q Consensus 82 ~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~-~~~v~~ti~ak 128 (137)
+|.+. +.+++|+|+++..+|..+|++|++|.+.+. ++.++-++.+.
T Consensus 3 ~i~v~-~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~ 49 (73)
T cd04900 3 EVFIY-TPDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVL 49 (73)
T ss_pred EEEEE-ecCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEE
Confidence 34444 448999999999999999999999999887 68888888875
No 18
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.08 E-value=0.0047 Score=40.38 Aligned_cols=43 Identities=16% Similarity=0.397 Sum_probs=39.0
Q ss_pred EecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEE
Q 039443 86 ICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSK 128 (137)
Q Consensus 86 ~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~ak 128 (137)
+.+.+++|+|.+|..+|..+|+.|++|.+++.|+.++-++.+.
T Consensus 5 v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~ 47 (74)
T cd04925 5 LTGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVR 47 (74)
T ss_pred EEECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEE
Confidence 3466899999999999999999999999999999998888875
No 19
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.04 E-value=0.00033 Score=65.03 Aligned_cols=58 Identities=34% Similarity=0.520 Sum_probs=52.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC-CCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS-SSKLSMPEILDEATSYITHLQKNKESLERRRA 59 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~-~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~ 59 (137)
+||+.|++-|.-+|+....|+.++|. ..|+.|+..+.-||+||++|+..-+.|.....
T Consensus 279 AHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~ 337 (953)
T KOG2588|consen 279 AHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENA 337 (953)
T ss_pred hhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhh
Confidence 69999999999999999999999998 78999999999999999999887776665443
No 20
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.98 E-value=0.0075 Score=39.14 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=38.8
Q ss_pred eEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEE
Q 039443 82 EVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSK 128 (137)
Q Consensus 82 ~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~ak 128 (137)
.+.+. ..+++|+|.+|..+|.++|++|+++.+.+.++.++.+|++.
T Consensus 3 ri~V~-~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~ 48 (72)
T cd04926 3 RLELR-TEDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVT 48 (72)
T ss_pred EEEEE-ECCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEE
Confidence 34443 34789999999999999999999999998888888888875
No 21
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.91 E-value=0.0064 Score=40.61 Aligned_cols=42 Identities=7% Similarity=0.017 Sum_probs=38.2
Q ss_pred ecCCCcchHHHHHHHHHhCCcEEEEEEEe--eeCCeEEEEEEEE
Q 039443 87 CGSNRNFMFHEIISVLEEGAAEVINVTQF--NSGDRVIFSVLSK 128 (137)
Q Consensus 87 ~~~~~~~~L~~il~~Le~~~L~V~~a~~s--~~~~~v~~ti~ak 128 (137)
.+.+++|+|.+|..+|.++|++|.+|.++ +.|+++.-+|.+.
T Consensus 6 ~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~ 49 (75)
T cd04896 6 RCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQ 49 (75)
T ss_pred EeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEe
Confidence 35689999999999999999999999999 9999988877773
No 22
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=96.72 E-value=0.00077 Score=50.92 Aligned_cols=50 Identities=30% Similarity=0.475 Sum_probs=45.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC--CCCCCHHhHHHHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS--SSKLSMPEILDEATSYITHLQKNK 51 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~--~~k~~k~~il~~Ai~YIk~L~~~v 51 (137)
-||..||+|-.-+|+.|..||..+|. +.|.+|...|.-|..||..|-+-+
T Consensus 81 ~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 81 MANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 48999999999999999999999998 789999999999999999886544
No 23
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.66 E-value=0.022 Score=35.81 Aligned_cols=45 Identities=13% Similarity=0.059 Sum_probs=39.4
Q ss_pred ecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEecC
Q 039443 87 CGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKVHF 131 (137)
Q Consensus 87 ~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv~~ 131 (137)
.+.+++|.|.++..+|.++|+.|.++.+.+.++.++.++++.-.+
T Consensus 6 ~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~~ 50 (70)
T cd04899 6 TALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDAD 50 (70)
T ss_pred EEcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECCC
Confidence 455789999999999999999999999999888888888887544
No 24
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.53 E-value=0.02 Score=37.55 Aligned_cols=49 Identities=10% Similarity=0.203 Sum_probs=40.0
Q ss_pred eEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeee-CCeEEEEEEEEecC
Q 039443 82 EVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNS-GDRVIFSVLSKVHF 131 (137)
Q Consensus 82 ~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~-~~~v~~ti~akv~~ 131 (137)
+|.+++. .++++|.++..+|..+||+|++|.+.+. +|.++-++.+.=.+
T Consensus 3 eI~V~~~-Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~~ 52 (68)
T cd04928 3 EITFAAG-DKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGWK 52 (68)
T ss_pred EEEEEEC-CCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecCC
Confidence 4555444 7999999999999999999999999765 77888888876433
No 25
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=96.39 E-value=0.0062 Score=49.43 Aligned_cols=50 Identities=28% Similarity=0.375 Sum_probs=44.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcCCC---CCCCCHHhHHHHHHHHHHHHHHHHH
Q 039443 3 RNIKEKHRRTHMKDLISQLASLIPS---SSKLSMPEILDEATSYITHLQKNKE 52 (137)
Q Consensus 3 h~~~ER~RR~~mn~~~~~Lrsl~P~---~~k~~k~~il~~Ai~YIk~L~~~v~ 52 (137)
-|..||+|...+|..|..||-.+|. ..|++|-..|--|-.||-.|-..++
T Consensus 178 anarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l~ 230 (285)
T KOG4395|consen 178 ANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLLD 230 (285)
T ss_pred cchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhhc
Confidence 4789999999999999999999998 5789999999999999988866553
No 26
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=96.07 E-value=0.055 Score=35.37 Aligned_cols=48 Identities=21% Similarity=0.291 Sum_probs=39.8
Q ss_pred EEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEec
Q 039443 83 VNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKVH 130 (137)
Q Consensus 83 V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv~ 130 (137)
|..+.|.+++|.+..+..+|.++|.++.+++.+..++.+...+.+.+.
T Consensus 4 vItv~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~ 51 (76)
T PF13740_consen 4 VITVVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP 51 (76)
T ss_dssp EEEEEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC
Confidence 344567789999999999999999999999999999999888888776
No 27
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=95.55 E-value=0.15 Score=31.61 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=37.5
Q ss_pred ecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEecC
Q 039443 87 CGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKVHF 131 (137)
Q Consensus 87 ~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv~~ 131 (137)
.+.+++|.|.++...|.++|+.+.++.+.+.++.....+++.-.+
T Consensus 6 ~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~~~ 50 (70)
T cd04873 6 YAPDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTDSD 50 (70)
T ss_pred EeCCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEECCC
Confidence 455789999999999999999999999988877666777776443
No 28
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.35 E-value=0.12 Score=48.36 Aligned_cols=62 Identities=19% Similarity=0.141 Sum_probs=48.9
Q ss_pred CCceeEEEeeCC-eeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEe
Q 039443 68 EPTVMNITTSGS-TLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKV 129 (137)
Q Consensus 68 ~~p~v~v~~~~s-~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv 129 (137)
..|.|.+....+ +.-+..+++.+++|+|++|..+|..+|++|++|.+++.|+++.-+|.+.=
T Consensus 800 ~~~~V~i~~~~~~~~T~i~V~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d 862 (895)
T PRK00275 800 FPTQVTISNDAQRPVTVLEIIAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD 862 (895)
T ss_pred CCCEEEEEECCCCCeEEEEEEECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEEC
Confidence 356676665433 23344455668999999999999999999999999999999998888863
No 29
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.11 E-value=0.11 Score=48.65 Aligned_cols=60 Identities=8% Similarity=0.063 Sum_probs=46.3
Q ss_pred CceeEEEeeCC-eeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEE
Q 039443 69 PTVMNITTSGS-TLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSK 128 (137)
Q Consensus 69 ~p~v~v~~~~s-~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~ak 128 (137)
+|.|.+....| ..-+.-+.+.+++|+|.+|..+|.++|++|.+|-+++.|+++.-+|.+.
T Consensus 795 ~~~V~~d~~~s~~~TvlEV~a~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~ 855 (884)
T PRK05007 795 PTEVSFLPTHTDRRSYMELIALDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILA 855 (884)
T ss_pred CCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEE
Confidence 45566654333 2233334466899999999999999999999999999999988777774
No 30
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=95.03 E-value=0.33 Score=31.48 Aligned_cols=43 Identities=14% Similarity=0.225 Sum_probs=36.1
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeee--CCeEEEEEEEEecC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNS--GDRVIFSVLSKVHF 131 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~--~~~v~~ti~akv~~ 131 (137)
.+++|+|.+|..++.+.|+.+.+.++... ++....+|.++|.+
T Consensus 14 ~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d 58 (80)
T PF13291_consen 14 EDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD 58 (80)
T ss_dssp E--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS
T ss_pred EcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC
Confidence 47899999999999999999999999985 66777899988876
No 31
>PRK04374 PII uridylyl-transferase; Provisional
Probab=95.02 E-value=0.18 Score=47.29 Aligned_cols=60 Identities=12% Similarity=0.081 Sum_probs=47.6
Q ss_pred CceeEEEeeCC-eeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEE
Q 039443 69 PTVMNITTSGS-TLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSK 128 (137)
Q Consensus 69 ~p~v~v~~~~s-~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~ak 128 (137)
+|.|.+....+ ..-+..+++..++|+|.+|-.+|..+|++|++|.+++.|+++.-+|.+.
T Consensus 783 ~~~V~~~~~~~~~~t~leI~a~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~ 843 (869)
T PRK04374 783 APRVEFSESAGGRRTRISLVAPDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQIT 843 (869)
T ss_pred CCeEEEeecCCCCeEEEEEEeCCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEE
Confidence 45666664333 3333444566899999999999999999999999999999999888886
No 32
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=94.99 E-value=0.026 Score=49.79 Aligned_cols=54 Identities=19% Similarity=0.255 Sum_probs=45.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC----CCCCCHHhHHHHHHHHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS----SSKLSMPEILDEATSYITHLQKNKESLE 55 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~----~~k~~k~~il~~Ai~YIk~L~~~v~~L~ 55 (137)
+.|++||-|-+-+|+.|..|-.+.-. ...-.|--||..|+.-|-.||++|++-.
T Consensus 529 aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRERN 586 (632)
T KOG3910|consen 529 ANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRERN 586 (632)
T ss_pred hhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 57899999999999999999766543 3446788999999999999999998744
No 33
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=94.97 E-value=0.27 Score=29.99 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=29.4
Q ss_pred cCCCcchHHHHHHHHHhCCcEEEEEEEeeeCC
Q 039443 88 GSNRNFMFHEIISVLEEGAAEVINVTQFNSGD 119 (137)
Q Consensus 88 ~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~ 119 (137)
..+++|.|.++...|.++|+.|.++.+.+.++
T Consensus 7 ~~drpG~l~~v~~~la~~~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 7 VPDRPGILADVTEILADHGINIDSISQSSDKD 38 (66)
T ss_dssp EETSTTHHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence 34889999999999999999999999999876
No 34
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=94.63 E-value=0.27 Score=32.19 Aligned_cols=47 Identities=13% Similarity=0.273 Sum_probs=41.4
Q ss_pred EEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEecC
Q 039443 85 LICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKVHF 131 (137)
Q Consensus 85 ~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv~~ 131 (137)
.+.|.+++|...+|-..|.++|..+++++....++.+++.+...+..
T Consensus 5 tv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~~ 51 (77)
T cd04893 5 SALGTDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGSW 51 (77)
T ss_pred EEEeCCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEecc
Confidence 44566899999999999999999999999999999998888877653
No 35
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.47 E-value=0.27 Score=46.00 Aligned_cols=59 Identities=17% Similarity=0.166 Sum_probs=45.4
Q ss_pred CceeEEEeeCC-eeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEE
Q 039443 69 PTVMNITTSGS-TLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLS 127 (137)
Q Consensus 69 ~p~v~v~~~~s-~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~a 127 (137)
+|.+.+....+ ..-+..+.+.+++|+|.+|..+|..+|++|++|.+++.|+++.-+|.+
T Consensus 773 ~~~V~~~~~~~~~~T~i~V~a~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V 832 (856)
T PRK03059 773 TPRVDLRPDERGQYYILSVSANDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLI 832 (856)
T ss_pred CceEEEEEcCCCCEEEEEEEeCCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEE
Confidence 34555544322 222333445589999999999999999999999999999999988887
No 36
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=94.37 E-value=0.042 Score=47.71 Aligned_cols=41 Identities=29% Similarity=0.423 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC----CCCCCHHhHHHHHHHHHHH
Q 039443 6 KEKHRRTHMKDLISQLASLIPS----SSKLSMPEILDEATSYITH 46 (137)
Q Consensus 6 ~ER~RR~~mn~~~~~Lrsl~P~----~~k~~k~~il~~Ai~YIk~ 46 (137)
+-|.||++-|--|+.|..++|- .+.+||++|+.-|..|||-
T Consensus 8 aA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKm 52 (598)
T KOG3559|consen 8 AARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKM 52 (598)
T ss_pred HHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHH
Confidence 4589999999999999999997 5779999999999999985
No 37
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.30 E-value=2.1 Score=39.94 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=45.5
Q ss_pred CceeEEEe--eCCeeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEe-eeCCeEEEEEEEEecC
Q 039443 69 PTVMNITT--SGSTLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQF-NSGDRVIFSVLSKVHF 131 (137)
Q Consensus 69 ~p~v~v~~--~~s~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s-~~~~~v~~ti~akv~~ 131 (137)
.|.+.+.. .+...+|.+ .+.+++|+|.+|..+|..+|++|++|.++ +.|+.++-+|.++-.+
T Consensus 655 ~~~v~~~~~~~~~~t~i~V-~~~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~~ 719 (850)
T TIGR01693 655 GPLALIDGTRPSGGTEVFI-YAPDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDLF 719 (850)
T ss_pred CCEEEEeccCCCCeEEEEE-EeCCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECCC
Confidence 34455432 122334444 44589999999999999999999999998 6688888888876443
No 38
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.29 E-value=0.32 Score=44.96 Aligned_cols=61 Identities=15% Similarity=0.094 Sum_probs=47.0
Q ss_pred CceeEEEeeCC-eeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEe
Q 039443 69 PTVMNITTSGS-TLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKV 129 (137)
Q Consensus 69 ~p~v~v~~~~s-~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv 129 (137)
+|.+.+....+ ..-+..+.+..++|+|.+|..+|.++|++|.+|.+++.|+.++-+|.+.=
T Consensus 694 ~~~v~~~~~~~~~~t~i~V~a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d 755 (774)
T PRK03381 694 PPRVLWLDGASPDATVLEVRAADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTG 755 (774)
T ss_pred CcEEEEEECCCCCeEEEEEEeCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEEC
Confidence 34555554332 23344445668999999999999999999999999999999998888763
No 39
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=94.17 E-value=0.039 Score=50.29 Aligned_cols=40 Identities=30% Similarity=0.474 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC----CCCCCHHhHHHHHHHHHH
Q 039443 6 KEKHRRTHMKDLISQLASLIPS----SSKLSMPEILDEATSYIT 45 (137)
Q Consensus 6 ~ER~RR~~mn~~~~~Lrsl~P~----~~k~~k~~il~~Ai~YIk 45 (137)
+=|.||.|-|+-|+.|.-+||- .+-+||++|+.-||.|.+
T Consensus 53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHH
Confidence 4588999999999999999997 578999999999999986
No 40
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=94.11 E-value=0.25 Score=31.91 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=38.0
Q ss_pred EecCCCcchHHHHHHHHHhCCcEEEEEEEeeeC------CeEEEEEEEEecC
Q 039443 86 ICGSNRNFMFHEIISVLEEGAAEVINVTQFNSG------DRVIFSVLSKVHF 131 (137)
Q Consensus 86 ~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~------~~v~~ti~akv~~ 131 (137)
+.+..++|.+.+|-..|.++|+.+.+.+..+.+ +.++..+.+.+.+
T Consensus 4 v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~ 55 (81)
T cd04869 4 VVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA 55 (81)
T ss_pred EEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC
Confidence 446679999999999999999999999998887 5566677766654
No 41
>PRK05092 PII uridylyl-transferase; Provisional
Probab=93.94 E-value=0.48 Score=44.61 Aligned_cols=61 Identities=15% Similarity=0.209 Sum_probs=47.6
Q ss_pred CceeEEEeeCC-eeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEe
Q 039443 69 PTVMNITTSGS-TLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKV 129 (137)
Q Consensus 69 ~p~v~v~~~~s-~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv 129 (137)
.|.|.+....+ ..-+..+.+.+++|+|.+|..+|.++|++|.+|.+++.++++.-+|.+.-
T Consensus 830 ~~~V~~~~~~s~~~t~i~I~~~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d 891 (931)
T PRK05092 830 PPRVTIDNEASNRFTVIEVNGRDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD 891 (931)
T ss_pred CCEEEEeeCCCCCeEEEEEEECCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeC
Confidence 45666664333 22233445568999999999999999999999999999999998888864
No 42
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.85 E-value=0.51 Score=29.80 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=37.2
Q ss_pred cCCCcchHHHHHHHHHhCCcEEEEEEEeee-CCeEEEEEEEEecCC
Q 039443 88 GSNRNFMFHEIISVLEEGAAEVINVTQFNS-GDRVIFSVLSKVHFR 132 (137)
Q Consensus 88 ~~~~~~~L~~il~~Le~~~L~V~~a~~s~~-~~~v~~ti~akv~~~ 132 (137)
..+++|.|.+|...+.+.|..+.+.++... ++.....|.+++.+.
T Consensus 6 ~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~~~ 51 (74)
T cd04887 6 LPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAPSE 51 (74)
T ss_pred eCCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcCCH
Confidence 347899999999999999999999998876 466667788877653
No 43
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.80 E-value=0.31 Score=45.52 Aligned_cols=60 Identities=10% Similarity=0.071 Sum_probs=46.0
Q ss_pred CceeEEEeeCC-eeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEE
Q 039443 69 PTVMNITTSGS-TLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSK 128 (137)
Q Consensus 69 ~p~v~v~~~~s-~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~ak 128 (137)
+|.|.+....+ ..-+.-+...+++|+|.+|..+|.++|++|.+|-+++.|+++.-+|.+.
T Consensus 770 ~~~V~~dn~~s~~~T~iev~a~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~ 830 (854)
T PRK01759 770 KTEVRFLNEEKQEQTEMELFALDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILT 830 (854)
T ss_pred CCEEEEccCCCCCeEEEEEEeCCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEE
Confidence 45566654333 2233334466899999999999999999999999999999988777765
No 44
>PRK00194 hypothetical protein; Validated
Probab=93.70 E-value=0.28 Score=32.65 Aligned_cols=48 Identities=13% Similarity=0.175 Sum_probs=39.9
Q ss_pred EEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEecC
Q 039443 84 NLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKVHF 131 (137)
Q Consensus 84 ~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv~~ 131 (137)
..+.|.+++|.+.++...|-++|+.+++.+..+.++.++..+.+.+..
T Consensus 6 ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~~ 53 (90)
T PRK00194 6 ITVIGKDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDISE 53 (90)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEecC
Confidence 344566799999999999999999999999988888777777777654
No 45
>PRK03381 PII uridylyl-transferase; Provisional
Probab=93.51 E-value=0.59 Score=43.25 Aligned_cols=60 Identities=12% Similarity=0.158 Sum_probs=46.1
Q ss_pred CceeEEEee-CCeeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEe
Q 039443 69 PTVMNITTS-GSTLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKV 129 (137)
Q Consensus 69 ~p~v~v~~~-~s~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv 129 (137)
.|.+.+... +...+|.++ +.+++|+|++|..+|..+|++|++|++.+.+|.++-+|.+.-
T Consensus 587 ~~~v~~~~~~~~~~~V~V~-~~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~ 647 (774)
T PRK03381 587 GVHVEIAPADPHMVEVTVV-APDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP 647 (774)
T ss_pred CCEEEEeeCCCCeEEEEEE-ecCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC
Confidence 344554422 344566554 458999999999999999999999999998888888888763
No 46
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.45 E-value=0.52 Score=30.42 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=39.0
Q ss_pred EEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEecC
Q 039443 85 LICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKVHF 131 (137)
Q Consensus 85 ~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv~~ 131 (137)
.+.|..++|...++-..|.++|+++.+.+.+..++.+...+.+.+..
T Consensus 3 tv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~ 49 (75)
T cd04870 3 TVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPD 49 (75)
T ss_pred EEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCC
Confidence 34577899999999999999999999999998888766666665543
No 47
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.41 E-value=0.65 Score=28.36 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=33.8
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeee-----CCeEEEEEEEEecC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNS-----GDRVIFSVLSKVHF 131 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~-----~~~v~~ti~akv~~ 131 (137)
.+++|.|.+|+..+.+.|+++.+.+.... ++...+.+...+.+
T Consensus 6 ~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~ 53 (73)
T cd04886 6 PDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRG 53 (73)
T ss_pred CCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCC
Confidence 47899999999999999999999887764 35555666666643
No 48
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.27 Score=45.82 Aligned_cols=61 Identities=15% Similarity=0.128 Sum_probs=45.3
Q ss_pred CceeEEEeeCCe-eeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEe
Q 039443 69 PTVMNITTSGST-LEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKV 129 (137)
Q Consensus 69 ~p~v~v~~~~s~-~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv 129 (137)
+|.|++...-+. ..+.-+.+..++|+|..+-.+|.+++|++.+|.++++|.++.-+|.+..
T Consensus 778 ~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~ 839 (867)
T COG2844 778 PPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTD 839 (867)
T ss_pred CCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEec
Confidence 466776533221 2233334778999999999999999999999999999998876555443
No 49
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.08 E-value=0.31 Score=32.41 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=40.2
Q ss_pred EEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEecC
Q 039443 85 LICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKVHF 131 (137)
Q Consensus 85 ~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv~~ 131 (137)
.+.|.+++|.+.+|...|-++|+++++++..+.++.++..+.+.+.+
T Consensus 5 ~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~~ 51 (88)
T cd04872 5 TVVGKDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISE 51 (88)
T ss_pred EEEcCCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeCC
Confidence 34566899999999999999999999999999888877777777664
No 50
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=92.72 E-value=0.92 Score=42.46 Aligned_cols=59 Identities=10% Similarity=0.168 Sum_probs=45.1
Q ss_pred CceeEEEeeC--CeeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEee-eCCeEEEEEEEE
Q 039443 69 PTVMNITTSG--STLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFN-SGDRVIFSVLSK 128 (137)
Q Consensus 69 ~p~v~v~~~~--s~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~-~~~~v~~ti~ak 128 (137)
.|.+.+.... ...+|.++ +.+++|+|++|..+|..+||+|++|.+.+ .+|.++-+|.+.
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~-~~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~ 725 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIY-CQDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVT 725 (854)
T ss_pred CCEEEEEecCCCCeEEEEEE-ecCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEe
Confidence 4555555332 33345544 45799999999999999999999999976 799988888775
No 51
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=92.58 E-value=0.71 Score=42.96 Aligned_cols=62 Identities=13% Similarity=0.084 Sum_probs=48.0
Q ss_pred CceeEEEeeCCe-eeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEec
Q 039443 69 PTVMNITTSGST-LEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKVH 130 (137)
Q Consensus 69 ~p~v~v~~~~s~-~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv~ 130 (137)
+|.|.+....+. .-+.-+.+.+++|+|.+|..+|.++|++|.++.+++.++++.-+|.+.-.
T Consensus 766 ~~~V~~d~~~s~~~t~~~v~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~~ 828 (850)
T TIGR01693 766 PPRVTILNTASRKATIMEVRALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTDL 828 (850)
T ss_pred CCeEEEccCCCCCeEEEEEEECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEECC
Confidence 455666544432 33444556689999999999999999999999999999988877777643
No 52
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=91.51 E-value=1.3 Score=28.24 Aligned_cols=43 Identities=9% Similarity=0.083 Sum_probs=35.1
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeCC-eEEEEEEEEecC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSGD-RVIFSVLSKVHF 131 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~-~v~~ti~akv~~ 131 (137)
.+++|.|.++++.|.++|+.+.+..+.+..+ .--|.+.+.+.+
T Consensus 7 ~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~ 50 (75)
T cd04880 7 KNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEG 50 (75)
T ss_pred CCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEEC
Confidence 3689999999999999999999998888755 444676666665
No 53
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.42 E-value=1 Score=28.74 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=28.9
Q ss_pred EEecCCCcchHHHHHHHHHhCCcEEEEEEEeee
Q 039443 85 LICGSNRNFMFHEIISVLEEGAAEVINVTQFNS 117 (137)
Q Consensus 85 ~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~ 117 (137)
.+.|..++|.+.+|-..|-++|+.+++.+..+.
T Consensus 3 ~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~ 35 (74)
T cd04875 3 TLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVD 35 (74)
T ss_pred EEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeec
Confidence 345668999999999999999999999998863
No 54
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=91.14 E-value=1.7 Score=27.30 Aligned_cols=44 Identities=9% Similarity=0.144 Sum_probs=34.8
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeee-CCeEEEEEEEEecCC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNS-GDRVIFSVLSKVHFR 132 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~-~~~v~~ti~akv~~~ 132 (137)
.+++|.|.+|+..|.+.|+++...+.+.. ++..-..|.+.+.+.
T Consensus 8 ~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~ 52 (76)
T cd04888 8 EHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTM 52 (76)
T ss_pred cCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCch
Confidence 36789999999999999999999987654 455566777766554
No 55
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=91.07 E-value=1.1 Score=42.30 Aligned_cols=51 Identities=4% Similarity=0.094 Sum_probs=40.9
Q ss_pred CeeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEe-eeCCeEEEEEEEEec
Q 039443 79 STLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQF-NSGDRVIFSVLSKVH 130 (137)
Q Consensus 79 s~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s-~~~~~v~~ti~akv~ 130 (137)
...+|.++|. +++|+|.++..+|..+|++|++|.+. +-+|.++-+|.+.=.
T Consensus 703 ~~t~V~V~~~-DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d~ 754 (895)
T PRK00275 703 GGTQIFIYAP-DQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLDD 754 (895)
T ss_pred CeEEEEEEeC-CCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeCC
Confidence 4556666555 79999999999999999999999984 457787778877643
No 56
>PRK05007 PII uridylyl-transferase; Provisional
Probab=91.05 E-value=1.8 Score=40.64 Aligned_cols=59 Identities=12% Similarity=0.245 Sum_probs=43.8
Q ss_pred CceeEEEee--CCeeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeee-CCeEEEEEEEE
Q 039443 69 PTVMNITTS--GSTLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNS-GDRVIFSVLSK 128 (137)
Q Consensus 69 ~p~v~v~~~--~s~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~-~~~v~~ti~ak 128 (137)
.|.+.+... +...+|.+ ++.+++|+|.+|..+|..+|++|++|.+.+. +|.++-++.+.
T Consensus 688 ~p~V~i~~~~~~~~t~V~V-~a~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~ 749 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFI-WSPDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVL 749 (884)
T ss_pred CCeEEEEecCCCCeEEEEE-EecCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEE
Confidence 455555542 23445555 4558999999999999999999999998776 55887677665
No 57
>PRK03059 PII uridylyl-transferase; Provisional
Probab=90.91 E-value=1.2 Score=41.83 Aligned_cols=50 Identities=8% Similarity=0.101 Sum_probs=41.6
Q ss_pred CeeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEe-eeCCeEEEEEEEEe
Q 039443 79 STLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQF-NSGDRVIFSVLSKV 129 (137)
Q Consensus 79 s~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s-~~~~~v~~ti~akv 129 (137)
...+|.++|. +++|+|+++..+|..+||+|++|.+. +.+|.++-++.+.=
T Consensus 677 ~~~~v~i~~~-d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~ 727 (856)
T PRK03059 677 EGLQVMVYTP-DQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLD 727 (856)
T ss_pred CeEEEEEEec-CCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeC
Confidence 4557766555 79999999999999999999999995 45888888888764
No 58
>PRK05092 PII uridylyl-transferase; Provisional
Probab=90.75 E-value=1.9 Score=40.68 Aligned_cols=60 Identities=13% Similarity=0.285 Sum_probs=45.4
Q ss_pred CceeEEEee--CCeeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEee-eCCeEEEEEEEEe
Q 039443 69 PTVMNITTS--GSTLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFN-SGDRVIFSVLSKV 129 (137)
Q Consensus 69 ~p~v~v~~~--~s~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~-~~~~v~~ti~akv 129 (137)
.|.+.++.. +...+|.++|. +++|+|.+|..+|..+|++|++|.+.+ .|+.++-+|.+.-
T Consensus 719 ~~~v~~~~~~~~~~t~v~I~~~-Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~ 781 (931)
T PRK05092 719 PLATEVRPDPARGVTEVTVLAA-DHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD 781 (931)
T ss_pred CcEEEEEecCCCCeEEEEEEeC-CCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC
Confidence 355655543 23556666555 789999999999999999999999877 4777777777653
No 59
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=90.57 E-value=2.2 Score=24.85 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=32.9
Q ss_pred cCCCcchHHHHHHHHHhCCcEEEEEEEeeeC-CeEEEEEEEEec
Q 039443 88 GSNRNFMFHEIISVLEEGAAEVINVTQFNSG-DRVIFSVLSKVH 130 (137)
Q Consensus 88 ~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~-~~v~~ti~akv~ 130 (137)
+.++++.+.+++..|.++++++.+..+...+ +...+.+..++.
T Consensus 5 ~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 48 (71)
T cd04876 5 AIDRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEVR 48 (71)
T ss_pred EeccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEEC
Confidence 3467889999999999999999999887765 545455555543
No 60
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=89.63 E-value=0.33 Score=43.57 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHhcCCC----CCCCCHHhHHHHHHHHHH
Q 039443 9 HRRTHMKDLISQLASLIPS----SSKLSMPEILDEATSYIT 45 (137)
Q Consensus 9 ~RR~~mn~~~~~Lrsl~P~----~~k~~k~~il~~Ai~YIk 45 (137)
+-|.++|.-+..|.||+|. ++|+||-|+|.-++.|++
T Consensus 35 RHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 35 RHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 3467889999999999997 799999999999999985
No 61
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=89.55 E-value=1.4 Score=28.29 Aligned_cols=38 Identities=13% Similarity=0.174 Sum_probs=30.1
Q ss_pred cCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEE
Q 039443 88 GSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVL 126 (137)
Q Consensus 88 ~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~ 126 (137)
+.+++|.|.+|+..+.+.|..+.+.++.+. +.+.+++.
T Consensus 7 ~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i~ 44 (74)
T cd04877 7 CEDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNFP 44 (74)
T ss_pred EEccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEeE
Confidence 347899999999999999999999999775 54333433
No 62
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=89.48 E-value=3.3 Score=26.81 Aligned_cols=44 Identities=9% Similarity=0.101 Sum_probs=35.9
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeC-CeEEEEEEEEecCC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSG-DRVIFSVLSKVHFR 132 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~-~~v~~ti~akv~~~ 132 (137)
.+++|.|.+++..|.++|+.+.+..+.+.. +.-.|++.+.+...
T Consensus 9 ~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~ 53 (80)
T cd04905 9 PNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGH 53 (80)
T ss_pred CCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECC
Confidence 367999999999999999999999887763 45557888777654
No 63
>PRK04435 hypothetical protein; Provisional
Probab=89.39 E-value=3.2 Score=30.63 Aligned_cols=55 Identities=13% Similarity=0.276 Sum_probs=41.4
Q ss_pred eCCeeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeee-CCeEEEEEEEEecCC
Q 039443 77 SGSTLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNS-GDRVIFSVLSKVHFR 132 (137)
Q Consensus 77 ~~s~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~-~~~v~~ti~akv~~~ 132 (137)
.|..+.+.+.+. +++|.|.+|+..|.+.|+.|.+.+.+.. ++....+|.+.+.+.
T Consensus 66 ~~r~vtL~i~l~-Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~ 121 (147)
T PRK04435 66 KGKIITLSLLLE-DRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM 121 (147)
T ss_pred CCcEEEEEEEEe-cCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh
Confidence 344444444444 6799999999999999999999987653 677777888887654
No 64
>PRK04374 PII uridylyl-transferase; Provisional
Probab=89.21 E-value=2.1 Score=40.23 Aligned_cols=50 Identities=16% Similarity=0.209 Sum_probs=41.9
Q ss_pred CeeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEee-eCCeEEEEEEEEe
Q 039443 79 STLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFN-SGDRVIFSVLSKV 129 (137)
Q Consensus 79 s~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~-~~~~v~~ti~akv 129 (137)
...+|.++|. +++|+|++|..+|..+|++|++|.+.+ .+|.++-+|.+.=
T Consensus 689 ~~~~v~v~~~-d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~ 739 (869)
T PRK04374 689 DALEVFVYSP-DRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLP 739 (869)
T ss_pred CeEEEEEEeC-CCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeC
Confidence 4567766555 799999999999999999999999977 5888888888753
No 65
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=88.32 E-value=4 Score=24.73 Aligned_cols=38 Identities=11% Similarity=0.245 Sum_probs=29.4
Q ss_pred cCCCcchHHHHHHHHHhCCcEEEEEEEeeeC-CeEEEEE
Q 039443 88 GSNRNFMFHEIISVLEEGAAEVINVTQFNSG-DRVIFSV 125 (137)
Q Consensus 88 ~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~-~~v~~ti 125 (137)
..+++|.|.+++..|.++++.+.+.+....+ +...+++
T Consensus 7 ~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i 45 (72)
T cd04874 7 AEDKPGVLRDLTGVIAEHGGNITYTQQFIEREGKARIYM 45 (72)
T ss_pred eCCCCChHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEE
Confidence 3478999999999999999999998887653 3433333
No 66
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.33 E-value=2 Score=26.02 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=30.0
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeC--CeEEEEEEE
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSG--DRVIFSVLS 127 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~--~~v~~ti~a 127 (137)
.+++|.|.++++.|.++|+.+.+...+... +...+.++.
T Consensus 7 ~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~v 47 (65)
T cd04882 7 PDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRT 47 (65)
T ss_pred CCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEe
Confidence 368999999999999999999887765543 455555554
No 67
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=87.03 E-value=3.4 Score=24.81 Aligned_cols=40 Identities=5% Similarity=-0.036 Sum_probs=32.4
Q ss_pred cCCCcchHHHHHHHHHhCCcEEEEEEEeeeC--CeEEEEEEE
Q 039443 88 GSNRNFMFHEIISVLEEGAAEVINVTQFNSG--DRVIFSVLS 127 (137)
Q Consensus 88 ~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~--~~v~~ti~a 127 (137)
..+++|.+.++...|.+.|+.+.+..+...+ +...+++.+
T Consensus 6 ~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 6 HKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred ecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 3467899999999999999999999987754 565556655
No 68
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=85.39 E-value=2.8 Score=25.94 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=34.0
Q ss_pred ecCCCcchHHHHHHHHHhCCcEEEEEEEee--eCCeEEEEEEEEe
Q 039443 87 CGSNRNFMFHEIISVLEEGAAEVINVTQFN--SGDRVIFSVLSKV 129 (137)
Q Consensus 87 ~~~~~~~~L~~il~~Le~~~L~V~~a~~s~--~~~~v~~ti~akv 129 (137)
...+++|.+.++...|.++|+.+.+..++. .++...+.+.+.-
T Consensus 5 ~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 5 RNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred EeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 455789999999999999999998887765 3567766776543
No 69
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=85.30 E-value=3.5 Score=26.58 Aligned_cols=43 Identities=7% Similarity=0.067 Sum_probs=34.9
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeE-EEEEEEEecC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSGDRV-IFSVLSKVHF 131 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v-~~ti~akv~~ 131 (137)
.+++|.|.++|..+...|+.+.+..+-+..+.- -|.+.+.+.+
T Consensus 8 ~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~ 51 (74)
T cd04904 8 KEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEV 51 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEc
Confidence 467999999999999999999999998875543 3676666654
No 70
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=84.75 E-value=4.1 Score=24.30 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=32.7
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeC-CeEEEEEEEEe
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSG-DRVIFSVLSKV 129 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~-~~v~~ti~akv 129 (137)
.+++|.|.++.+.|.+.|..+.+..+...+ +..++.|....
T Consensus 6 ~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~ 47 (56)
T cd04889 6 ENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD 47 (56)
T ss_pred CCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECC
Confidence 368999999999999999999888877754 66666665543
No 71
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=84.64 E-value=0.73 Score=35.03 Aligned_cols=46 Identities=24% Similarity=0.290 Sum_probs=35.6
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCC--CCCCCHHhHHHHHHHHHHHHHH
Q 039443 4 NIKEKHRRTHMKDLISQLASLIPS--SSKLSMPEILDEATSYITHLQK 49 (137)
Q Consensus 4 ~~~ER~RR~~mn~~~~~Lrsl~P~--~~k~~k~~il~~Ai~YIk~L~~ 49 (137)
.-.||.|-+.+++.|.-|++|+|. ..++.+-..+.-+.+||..|.|
T Consensus 27 ~~~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~dE 74 (173)
T KOG4447|consen 27 QRKERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLDE 74 (173)
T ss_pred hHHHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHHH
Confidence 345899999999999999999998 4555555557777777776654
No 72
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=83.87 E-value=4.2 Score=25.29 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=30.3
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEe
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKV 129 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv 129 (137)
+++|.|.+++..|.+.|+.|.+..+...++. ..++..+
T Consensus 10 d~pG~La~v~~~l~~~~inI~~i~~~~~~~~--~~~rl~~ 47 (66)
T cd04908 10 NKPGRLAAVTEILSEAGINIRALSIADTSEF--GILRLIV 47 (66)
T ss_pred CCCChHHHHHHHHHHCCCCEEEEEEEecCCC--CEEEEEE
Confidence 6899999999999999999999888776564 3444444
No 73
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=83.18 E-value=5.6 Score=21.62 Aligned_cols=30 Identities=27% Similarity=0.465 Sum_probs=25.9
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSG 118 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~ 118 (137)
.++++.+.+++..|...|+.+...+....+
T Consensus 6 ~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 6 PDRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred cCCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 356889999999999999999999887653
No 74
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=83.15 E-value=7.3 Score=23.40 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=29.8
Q ss_pred cCCCcchHHHHHHHHHhCCcEEEEEEEeee--CCeEEEEEE
Q 039443 88 GSNRNFMFHEIISVLEEGAAEVINVTQFNS--GDRVIFSVL 126 (137)
Q Consensus 88 ~~~~~~~L~~il~~Le~~~L~V~~a~~s~~--~~~v~~ti~ 126 (137)
..+++|.|.++...|.++|+.+.+...... ++...+.|.
T Consensus 6 ~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~ 46 (71)
T cd04903 6 HKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIE 46 (71)
T ss_pred eCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEE
Confidence 447899999999999999999998887663 344444443
No 75
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=81.54 E-value=7.4 Score=26.52 Aligned_cols=44 Identities=7% Similarity=0.097 Sum_probs=34.9
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeCCe-EEEEEEEEecCC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSGDR-VIFSVLSKVHFR 132 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~-v~~ti~akv~~~ 132 (137)
.+++|.|.++|..|...|+.+.+..+-+..+. --|.|.+.+.+.
T Consensus 22 ~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~ 66 (90)
T cd04931 22 KEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKK 66 (90)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcC
Confidence 46799999999999999999999999887443 336766666653
No 76
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=81.19 E-value=1.3 Score=27.37 Aligned_cols=44 Identities=11% Similarity=0.005 Sum_probs=32.8
Q ss_pred EecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEe
Q 039443 86 ICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKV 129 (137)
Q Consensus 86 ~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv 129 (137)
+...+++|.|.+++..|.+.|..+.+.+....++..+..+...+
T Consensus 4 ~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~~ 47 (69)
T cd04901 4 HIHKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDIDS 47 (69)
T ss_pred EEecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcCC
Confidence 34557899999999999999999977766554566555555444
No 77
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.68 E-value=9.1 Score=25.00 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=33.9
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeCC-eEEEEEEEEecC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSGD-RVIFSVLSKVHF 131 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~-~v~~ti~akv~~ 131 (137)
.+++|.|.+++..|...|+.+.+..+-+..+ .--|.+.+.+.+
T Consensus 8 ~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e~ 51 (74)
T cd04929 8 KNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCEC 51 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 4679999999999999999999999988633 333666666554
No 78
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=80.62 E-value=8.2 Score=24.25 Aligned_cols=28 Identities=14% Similarity=0.203 Sum_probs=25.5
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeee
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNS 117 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~ 117 (137)
+++|.|.++++.|.++|+.+++......
T Consensus 8 d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 8 DKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred CCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 6899999999999999999999987765
No 79
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=80.16 E-value=10 Score=22.69 Aligned_cols=42 Identities=7% Similarity=0.015 Sum_probs=32.7
Q ss_pred cCCCcchHHHHHHHHHhCCcEEEEEEEeee--CCeEEEEEEEEe
Q 039443 88 GSNRNFMFHEIISVLEEGAAEVINVTQFNS--GDRVIFSVLSKV 129 (137)
Q Consensus 88 ~~~~~~~L~~il~~Le~~~L~V~~a~~s~~--~~~v~~ti~akv 129 (137)
..+++|.|.++...|.++|..+.+.+.... ++...+.+...+
T Consensus 7 ~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 7 VENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred EcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 346789999999999999999999988764 455555665554
No 80
>PRK07334 threonine dehydratase; Provisional
Probab=78.37 E-value=16 Score=31.02 Aligned_cols=44 Identities=11% Similarity=0.159 Sum_probs=36.4
Q ss_pred cCCCcchHHHHHHHHHhCCcEEEEEEEeee-----CCeEEEEEEEEecC
Q 039443 88 GSNRNFMFHEIISVLEEGAAEVINVTQFNS-----GDRVIFSVLSKVHF 131 (137)
Q Consensus 88 ~~~~~~~L~~il~~Le~~~L~V~~a~~s~~-----~~~v~~ti~akv~~ 131 (137)
..+++|.|.+|+..|.+.++.|.+.++.+. ++.....|..+|.+
T Consensus 333 ~~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d 381 (403)
T PRK07334 333 IRDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD 381 (403)
T ss_pred eCCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC
Confidence 347899999999999999999999998764 56666777777765
No 81
>PRK08577 hypothetical protein; Provisional
Probab=78.24 E-value=22 Score=25.46 Aligned_cols=44 Identities=9% Similarity=0.128 Sum_probs=33.9
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeC-Ce-EEEEEEEEecCC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSG-DR-VIFSVLSKVHFR 132 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~-~~-v~~ti~akv~~~ 132 (137)
.+++|.|.+++..|.+++.++.+.++.+.. +. ....+...+.+.
T Consensus 64 ~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~ 109 (136)
T PRK08577 64 EDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKS 109 (136)
T ss_pred cCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCc
Confidence 378999999999999999999998877653 33 334666676654
No 82
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.61 E-value=15 Score=22.45 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=31.2
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeee-C-CeEEEEEEEEe
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNS-G-DRVIFSVLSKV 129 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~-~-~~v~~ti~akv 129 (137)
.+++|.|.++...|.+.|..+.+.+.... + +.....+...+
T Consensus 8 ~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~ 50 (79)
T cd04881 8 KDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHE 50 (79)
T ss_pred CCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEcc
Confidence 46789999999999999999999987665 3 54445554443
No 83
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=75.19 E-value=17 Score=22.82 Aligned_cols=40 Identities=8% Similarity=0.060 Sum_probs=30.3
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeee--CCeEEEEEEEEe
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNS--GDRVIFSVLSKV 129 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~--~~~v~~ti~akv 129 (137)
+++|.|.+|+..+..-|+.+-+.+++.. ++..-++|.+.-
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~ 42 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSG 42 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEee
Confidence 3689999999999999999999999884 555555665543
No 84
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=74.15 E-value=21 Score=29.13 Aligned_cols=46 Identities=15% Similarity=0.186 Sum_probs=36.5
Q ss_pred EEEecCCCcchHHHHHHHHHhCCcEEEEEEEee--eCCeEEEEEEEEe
Q 039443 84 NLICGSNRNFMFHEIISVLEEGAAEVINVTQFN--SGDRVIFSVLSKV 129 (137)
Q Consensus 84 ~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~--~~~~v~~ti~akv 129 (137)
..+.|.+++|...+|-..|-++|+.+.+++.+. .++.++-.+.+.+
T Consensus 9 itv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~ 56 (286)
T PRK06027 9 LTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEG 56 (286)
T ss_pred EEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEe
Confidence 334566899999999999999999999999999 7775434455544
No 85
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=73.61 E-value=14 Score=20.95 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=26.4
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSV 125 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti 125 (137)
..++.+.++++.|.+.++.+...+.+..+..+.+++
T Consensus 12 ~~~~~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v 47 (60)
T cd04868 12 GTPGVAAKIFSALAEAGINVDMISQSESEVNISFTV 47 (60)
T ss_pred CCCCHHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEE
Confidence 356789999999999999998877665434444444
No 86
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=71.56 E-value=14 Score=26.30 Aligned_cols=43 Identities=16% Similarity=0.125 Sum_probs=33.7
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeE-EEEEEEEecC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSGDRV-IFSVLSKVHF 131 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v-~~ti~akv~~ 131 (137)
.+++|.|.++|..|..+|+.+.+..+-+..+.. -|.|.+.+.+
T Consensus 49 ~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdieg 92 (115)
T cd04930 49 KEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCEV 92 (115)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEEe
Confidence 467999999999999999999999998874433 2666666554
No 87
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=70.36 E-value=21 Score=21.43 Aligned_cols=36 Identities=11% Similarity=0.078 Sum_probs=26.0
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSV 125 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti 125 (137)
..++.+.+++++|.+.|+.|...+.+..+..+.+++
T Consensus 13 ~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v 48 (66)
T cd04922 13 GTPGVAATFFSALAKANVNIRAIAQGSSERNISAVI 48 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEE
Confidence 457889999999999999997665544344444443
No 88
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=70.04 E-value=17 Score=34.39 Aligned_cols=55 Identities=11% Similarity=0.209 Sum_probs=44.5
Q ss_pred EEEeeCCeeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEee-eCCeEEEEEEEE
Q 039443 73 NITTSGSTLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFN-SGDRVIFSVLSK 128 (137)
Q Consensus 73 ~v~~~~s~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~-~~~~v~~ti~ak 128 (137)
+++....+.+|++.|. .++.+|..+..++...|++|++|++-+ -+|..+-||.+.
T Consensus 677 ~~r~~~~~teV~V~a~-d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~ 732 (867)
T COG2844 677 SVRPHSGGTEVFVYAP-DRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVL 732 (867)
T ss_pred eecccCCceEEEEEcC-CCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEe
Confidence 3444556678888877 689999999999999999999999955 488788777654
No 89
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.59 E-value=22 Score=21.46 Aligned_cols=36 Identities=11% Similarity=0.036 Sum_probs=26.4
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSV 125 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti 125 (137)
..++.+.+++++|.+.|++|...+.+..+..+.+++
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v 48 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGASEINISCVI 48 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEE
Confidence 457889999999999999997665544444444444
No 90
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=68.89 E-value=11 Score=29.25 Aligned_cols=45 Identities=16% Similarity=0.177 Sum_probs=37.6
Q ss_pred EEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEE
Q 039443 83 VNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLS 127 (137)
Q Consensus 83 V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~a 127 (137)
|..+.|.+++|....|-..|.++|..+++++.+..++.+--.+.+
T Consensus 10 viTviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lv 54 (190)
T PRK11589 10 VITALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLL 54 (190)
T ss_pred EEEEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEE
Confidence 445567799999999999999999999999999999965444444
No 91
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=66.64 E-value=50 Score=30.90 Aligned_cols=46 Identities=11% Similarity=0.238 Sum_probs=37.5
Q ss_pred EecCCCcchHHHHHHHHHhCCcEEEEEEEeee--CCeEEEEEEEEecC
Q 039443 86 ICGSNRNFMFHEIISVLEEGAAEVINVTQFNS--GDRVIFSVLSKVHF 131 (137)
Q Consensus 86 ~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~--~~~v~~ti~akv~~ 131 (137)
+.+.+++|+|.+|..++.+.++.|.++++.+. ++....+|..+|.+
T Consensus 671 I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~ 718 (743)
T PRK10872 671 VTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN 718 (743)
T ss_pred EEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC
Confidence 34457899999999999999999999998765 45555678888776
No 92
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=66.30 E-value=21 Score=21.49 Aligned_cols=36 Identities=14% Similarity=0.146 Sum_probs=27.2
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLS 127 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~a 127 (137)
..++...++++.|++.|+.|.....+. +.+.+++..
T Consensus 12 ~~~~~~~~if~~l~~~~i~v~~i~t~~--~~is~~v~~ 47 (62)
T cd04890 12 GEVGFLRKIFEILEKHGISVDLIPTSE--NSVTLYLDD 47 (62)
T ss_pred cccCHHHHHHHHHHHcCCeEEEEecCC--CEEEEEEeh
Confidence 457788999999999999999986533 555555543
No 93
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=65.31 E-value=8.2 Score=26.70 Aligned_cols=47 Identities=17% Similarity=0.254 Sum_probs=39.3
Q ss_pred EEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEe
Q 039443 83 VNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKV 129 (137)
Q Consensus 83 V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv 129 (137)
|..+.|..++|....+-.+|-++|..+++.+-+..++.+-.-+.+..
T Consensus 5 vITV~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~ 51 (90)
T COG3830 5 VITVIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDI 51 (90)
T ss_pred EEEEEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcC
Confidence 45567889999999999999999999999999999887666555543
No 94
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=64.51 E-value=30 Score=21.17 Aligned_cols=40 Identities=15% Similarity=0.314 Sum_probs=31.2
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeee--CCeEEEEEEEEe
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNS--GDRVIFSVLSKV 129 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~--~~~v~~ti~akv 129 (137)
+++|.|.+++..|.++|+.+.+...... ++...+.|+...
T Consensus 10 d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~ 51 (72)
T cd04883 10 DRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT 51 (72)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec
Confidence 6789999999999999999988865543 456666676654
No 95
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=64.21 E-value=39 Score=31.10 Aligned_cols=45 Identities=7% Similarity=0.248 Sum_probs=37.5
Q ss_pred ecCCCcchHHHHHHHHHhCCcEEEEEEEeee-CCeEEEEEEEEecC
Q 039443 87 CGSNRNFMFHEIISVLEEGAAEVINVTQFNS-GDRVIFSVLSKVHF 131 (137)
Q Consensus 87 ~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~-~~~v~~ti~akv~~ 131 (137)
...+++|.|.+|..++-+.+..+.++++... ++.....|..+|.+
T Consensus 616 ~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 661 (683)
T TIGR00691 616 EAVDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN 661 (683)
T ss_pred EEecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC
Confidence 3447899999999999999999999999876 46666678888775
No 96
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=63.68 E-value=33 Score=25.77 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=33.4
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeC--CeEEEEEEEEe
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSG--DRVIFSVLSKV 129 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~--~~v~~ti~akv 129 (137)
.+++|.|.+|...|...|+.+.+.++...+ +..-.||++.-
T Consensus 9 en~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~ 51 (157)
T TIGR00119 9 ENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG 51 (157)
T ss_pred cCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC
Confidence 378999999999999999999999988765 44446776653
No 97
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=63.37 E-value=51 Score=26.95 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=36.5
Q ss_pred EEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeC--CeEEEEEEEEecC
Q 039443 85 LICGSNRNFMFHEIISVLEEGAAEVINVTQFNSG--DRVIFSVLSKVHF 131 (137)
Q Consensus 85 ~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~--~~v~~ti~akv~~ 131 (137)
.+.|.+++|....|-..|-++|+.+++++.+..+ +.++-.+.+.+.+
T Consensus 4 tv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~ 52 (280)
T TIGR00655 4 LVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEG 52 (280)
T ss_pred EEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCC
Confidence 3456689999999999999999999999998853 5555455555443
No 98
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=62.66 E-value=33 Score=20.96 Aligned_cols=30 Identities=10% Similarity=0.203 Sum_probs=25.6
Q ss_pred cCCCcchHHHHHHHHHhCCcEEEEEEEeee
Q 039443 88 GSNRNFMFHEIISVLEEGAAEVINVTQFNS 117 (137)
Q Consensus 88 ~~~~~~~L~~il~~Le~~~L~V~~a~~s~~ 117 (137)
..+++|.|.++...|.++|+.+.+......
T Consensus 8 ~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 8 VPDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred cCCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 347899999999999999999998876664
No 99
>PHA03386 P10 fibrous body protein; Provisional
Probab=60.71 E-value=19 Score=25.03 Aligned_cols=32 Identities=16% Similarity=0.323 Sum_probs=26.1
Q ss_pred CCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039443 31 LSMPEILDEATSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 31 ~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 62 (137)
|+|++||-..-.-|+.+-.+|..|+...+.+.
T Consensus 1 MSKpnILl~Ir~dIkavd~KVdaLQ~qV~dv~ 32 (94)
T PHA03386 1 MSKPSVLTQILDAVQEVDTKVDALQTQLNGLE 32 (94)
T ss_pred CCcchHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 78999999999999998888888877766554
No 100
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=59.87 E-value=36 Score=25.72 Aligned_cols=41 Identities=5% Similarity=0.058 Sum_probs=33.3
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeC--CeEEEEEEEEe
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSG--DRVIFSVLSKV 129 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~--~~v~~ti~akv 129 (137)
.+++|.|.+|...|...|+.+.+.++...+ +..-++|++.-
T Consensus 10 eN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~ 52 (161)
T PRK11895 10 ENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG 52 (161)
T ss_pred cCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC
Confidence 478999999999999999999999988764 44446776653
No 101
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=59.29 E-value=33 Score=19.83 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=22.9
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEee
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFN 116 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~ 116 (137)
..++.+.+++++|.+.++.|...+.+.
T Consensus 12 ~~~~~~~~i~~~l~~~~i~v~~i~~~~ 38 (65)
T cd04892 12 GTPGVAARIFSALAEAGINIIMISQGS 38 (65)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcCC
Confidence 457788999999999999998887654
No 102
>PF14992 TMCO5: TMCO5 family
Probab=58.58 E-value=19 Score=29.77 Aligned_cols=28 Identities=14% Similarity=0.393 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039443 34 PEILDEATSYITHLQKNKESLERRRALL 61 (137)
Q Consensus 34 ~~il~~Ai~YIk~L~~~v~~L~~~k~~l 61 (137)
..+-.|+++||+.|++.++.++.+++-+
T Consensus 143 ~~l~eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 143 HQLCEDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3557899999999999999999987653
No 103
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=57.81 E-value=61 Score=30.06 Aligned_cols=45 Identities=2% Similarity=-0.095 Sum_probs=36.9
Q ss_pred ecCCCcchHHHHHHHHHhCCcEEEEEEEeeeC-CeEEEEEEEEecC
Q 039443 87 CGSNRNFMFHEIISVLEEGAAEVINVTQFNSG-DRVIFSVLSKVHF 131 (137)
Q Consensus 87 ~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~-~~v~~ti~akv~~ 131 (137)
.+.+++|.|.+|...+.+.++.+.++++.+.+ +.+...|..+|.+
T Consensus 632 ~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 677 (702)
T PRK11092 632 EMFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD 677 (702)
T ss_pred EEeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC
Confidence 34478999999999999999999999987765 4555678888776
No 104
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=55.02 E-value=46 Score=20.52 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=26.8
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSV 125 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti 125 (137)
+.++.+.+++.+|.+.|+.|.-.+.++.+..+.+.+
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v 47 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVNISLIV 47 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEE
Confidence 457789999999999999997777655555554433
No 105
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=54.51 E-value=53 Score=20.82 Aligned_cols=36 Identities=8% Similarity=0.107 Sum_probs=27.3
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLS 127 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~a 127 (137)
..++.+.+++++|.+.|+.|..... .++.+.+++..
T Consensus 13 ~~~g~~~~if~~L~~~~I~v~~i~~--s~~~is~~v~~ 48 (75)
T cd04912 13 GAHGFLAKVFEIFAKHGLSVDLIST--SEVSVSLTLDP 48 (75)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEEc--CCcEEEEEEEc
Confidence 4578899999999999999988764 34555555554
No 106
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=54.37 E-value=44 Score=28.22 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhcCCC-CCCCC-----HHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCceeEEEeeCCeeeE
Q 039443 10 RRTHMKDLISQLASLIPS-SSKLS-----MPEILDEATSYITHLQKNKESLERRRALLKEEDHYEPTVMNITTSGSTLEV 83 (137)
Q Consensus 10 RR~~mn~~~~~Lrsl~P~-~~k~~-----k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~~~~~~~p~v~v~~~~s~~~V 83 (137)
-|+.|++ |..|++.-|. .+-.+ .+....+..+|++.|++.+++|+++... + ..+. -
T Consensus 174 ~R~~~~~-l~~l~~~~p~pitg~e~~~~~~~~~~~~~~e~~~~L~~~l~el~~~~~~---------~-----~~~~--R- 235 (380)
T TIGR02263 174 NRKLIQA-LYGLRADEPWKVPSADLYLLLRAGLVIPVEEHNQMLADYLAAARKQEAP---------I-----KDNC--R- 235 (380)
T ss_pred HHHHHHH-HHHHHhhCCCCCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhcccc---------C-----CCCC--E-
Confidence 3445554 6678877776 22222 1222344678888888888877653210 0 0111 1
Q ss_pred EEEecCCCcchHHHHHHHHHhCCcEEEEEEE
Q 039443 84 NLICGSNRNFMFHEIISVLEEGAAEVINVTQ 114 (137)
Q Consensus 84 ~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~ 114 (137)
++++|...+....+++..+|+.|..|+.-..
T Consensus 236 Il~tG~~~~~~~~k~~~~iE~~G~~VV~dd~ 266 (380)
T TIGR02263 236 VIICGMFCEQPPLNLIKSIELSGCYIVDDDF 266 (380)
T ss_pred EEEECcCCCCchHHHHHHHHHCCCEEEEecC
Confidence 2233432233346888999999999996543
No 107
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=53.92 E-value=60 Score=26.29 Aligned_cols=50 Identities=18% Similarity=0.227 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHH------------------HHHHHHHHHHHHHHHHHH
Q 039443 11 RTHMKDLISQLASLIPSSSKLSMPEILDEATS------------------YITHLQKNKESLERRRAL 60 (137)
Q Consensus 11 R~~mn~~~~~Lrsl~P~~~k~~k~~il~~Ai~------------------YIk~L~~~v~~L~~~k~~ 60 (137)
|+.+..+|.+|+..=....-.+-...|.++|. =||+++++|++||.+...
T Consensus 6 ~qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56889999999986544222222233333332 268889999999998754
No 108
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=53.77 E-value=60 Score=21.42 Aligned_cols=38 Identities=8% Similarity=0.162 Sum_probs=30.2
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeee--CCeEEEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNS--GDRVIFSVLS 127 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~--~~~v~~ti~a 127 (137)
+++|.|.+++..+..-|+.+-+.++... ++..=.||.+
T Consensus 12 n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v 51 (76)
T PRK11152 12 FRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTV 51 (76)
T ss_pred CCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEE
Confidence 7899999999999999999999999885 3333345554
No 109
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.31 E-value=47 Score=21.41 Aligned_cols=37 Identities=11% Similarity=0.088 Sum_probs=28.0
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSK 128 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~ak 128 (137)
..++.+.+++++|.+.|+.|-....+ .+.+.+++...
T Consensus 13 ~~~g~~~~IF~~La~~~I~vDmI~~s--~~~isftv~~~ 49 (75)
T cd04935 13 QQVGFLADVFAPFKKHGVSVDLVSTS--ETNVTVSLDPD 49 (75)
T ss_pred CccCHHHHHHHHHHHcCCcEEEEEeC--CCEEEEEEeCc
Confidence 45788999999999999999888653 35555665543
No 110
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=52.13 E-value=75 Score=26.01 Aligned_cols=43 Identities=9% Similarity=0.114 Sum_probs=32.4
Q ss_pred ecCCCcchHHHHHHHHHhCCcEEEEEEEeee-CCeEEEEEEEEec
Q 039443 87 CGSNRNFMFHEIISVLEEGAAEVINVTQFNS-GDRVIFSVLSKVH 130 (137)
Q Consensus 87 ~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~-~~~v~~ti~akv~ 130 (137)
.|.+++|...+|-..|-++|+++.+.+..+- ++..| ++.+.+.
T Consensus 13 ~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F-~m~~~~~ 56 (286)
T PRK13011 13 SCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRF-FMRVEFH 56 (286)
T ss_pred EeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeE-EEEEEEe
Confidence 4558999999999999999999999999743 33333 3455553
No 111
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.40 E-value=28 Score=21.68 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 039443 41 TSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 41 i~YIk~L~~~v~~L~~~k~~l~ 62 (137)
-.||.+|+.++..|+.+.+.|.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~ 46 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELK 46 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHH
Confidence 4688888888888888766554
No 112
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.15 E-value=67 Score=20.70 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=27.1
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLS 127 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~a 127 (137)
..++.+.+|++.|.+.|+.|-..+.+. +.+.+++..
T Consensus 13 ~~~g~~~~IF~~La~~~I~VDmI~~s~--~~iSftv~~ 48 (75)
T cd04932 13 HAQGFLAKVFGILAKHNISVDLITTSE--ISVALTLDN 48 (75)
T ss_pred CCcCHHHHHHHHHHHcCCcEEEEeecC--CEEEEEEec
Confidence 458899999999999999998886533 445555543
No 113
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=50.12 E-value=53 Score=19.51 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=24.7
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFS 124 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~t 124 (137)
..++.+.+++.+|.+.|+.|.-.+.+..+..+.++
T Consensus 13 ~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~ 47 (66)
T cd04916 13 NTVGVSARATAALAKAGINIRMINQGSSEISIMIG 47 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEE
Confidence 45788999999999999999766554333333333
No 114
>PRK11899 prephenate dehydratase; Provisional
Probab=50.07 E-value=72 Score=26.11 Aligned_cols=44 Identities=5% Similarity=0.089 Sum_probs=37.1
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEE-EEEEEEecCC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVI-FSVLSKVHFR 132 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~-~ti~akv~~~ 132 (137)
.+++|.|.++|..|-..|+......+=+..+... |.|.+.+.+.
T Consensus 202 ~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg~ 246 (279)
T PRK11899 202 RNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEGH 246 (279)
T ss_pred CCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEECC
Confidence 4789999999999999999999999988865544 7887777764
No 115
>PF13224 DUF4032: Domain of unknown function (DUF4032)
Probab=49.32 E-value=36 Score=26.02 Aligned_cols=41 Identities=20% Similarity=0.105 Sum_probs=34.5
Q ss_pred chHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEecCCC
Q 039443 93 FMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKVHFRP 133 (137)
Q Consensus 93 ~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv~~~~ 133 (137)
....+=+.-|+++|++|-...+++.+|.--..|..+|-+.+
T Consensus 19 ~ri~~ri~rLN~LGFdV~El~~~~~~~g~~~~i~p~Vvd~g 59 (165)
T PF13224_consen 19 WRIEERIRRLNELGFDVGELEITTDDDGTRLRIQPKVVDAG 59 (165)
T ss_pred HHHHHHHHHHHhcCCceeeeEeEEcCCCCEEEEEeeEeCCc
Confidence 44556689999999999999999998888888888887754
No 116
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=48.85 E-value=44 Score=21.93 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039443 36 ILDEATSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 36 il~~Ai~YIk~L~~~v~~L~~~k~~l~ 62 (137)
-+..||+-|..|+..+++|+.+...+.
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L~ 38 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNELK 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 478899999999999999999755443
No 117
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=48.74 E-value=35 Score=21.35 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.2
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVT 113 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~ 113 (137)
..+|.+.++...|.+.|+.|...+
T Consensus 19 ~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 19 DVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp TSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CcccHHHHHHHHHHHCCCCEEEEE
Confidence 478999999999999999998888
No 118
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=48.58 E-value=22 Score=19.98 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHh
Q 039443 8 KHRRTHMKDLISQLAS 23 (137)
Q Consensus 8 R~RR~~mn~~~~~Lrs 23 (137)
|+||.+++..+..||.
T Consensus 14 rrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 14 RRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7899999999999885
No 119
>smart00338 BRLZ basic region leucin zipper.
Probab=48.51 E-value=30 Score=21.59 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 039443 41 TSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 41 i~YIk~L~~~v~~L~~~k~~l~ 62 (137)
-.|+..|+.+++.|+.+...|.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~ 46 (65)
T smart00338 25 KAEIEELERKVEQLEAENERLK 46 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4588888888888888766654
No 120
>PRK11898 prephenate dehydratase; Provisional
Probab=47.27 E-value=70 Score=26.04 Aligned_cols=43 Identities=7% Similarity=-0.036 Sum_probs=33.9
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEE-EEEEEEecCC
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVI-FSVLSKVHFR 132 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~-~ti~akv~~~ 132 (137)
+++|.|.++|..|.+.|+.+.+..+-+..+... |.|.+.+.+.
T Consensus 206 ~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~eg~ 249 (283)
T PRK11898 206 NLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVEGH 249 (283)
T ss_pred CCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEEcc
Confidence 358999999999999999999999988754433 6666666553
No 121
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=47.03 E-value=95 Score=26.16 Aligned_cols=38 Identities=16% Similarity=0.293 Sum_probs=31.5
Q ss_pred CCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039443 26 PSSSKLSMPEILDEATSYITHLQKNKESLERRRALLKE 63 (137)
Q Consensus 26 P~~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~ 63 (137)
|...+.+-+.+|.++-+-.+.|+..+.+|.++..++.+
T Consensus 63 ~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 63 PEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33456778899999999999999999999998776654
No 122
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.64 E-value=68 Score=21.09 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=27.0
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVL 126 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~ 126 (137)
..++.+.+|++.|++.|+.|-..+.+ .+.+.+++.
T Consensus 13 ~~~g~~a~IF~~La~~~InVDmI~qs--~~sISftV~ 47 (78)
T cd04933 13 GQYGFLAKVFSIFETLGISVDVVATS--EVSISLTLD 47 (78)
T ss_pred CccCHHHHHHHHHHHcCCcEEEEEec--CCEEEEEEE
Confidence 45889999999999999999888653 355555554
No 123
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=46.37 E-value=69 Score=20.02 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=25.2
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFS 124 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~t 124 (137)
..++.+.+++++|.+.++.+...+.+..+..+.++
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~~isf~ 47 (80)
T cd04921 13 GVPGIAARIFSALARAGINVILISQASSEHSISFV 47 (80)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCcceEEEE
Confidence 45778999999999999999777655333333333
No 124
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.12 E-value=62 Score=18.84 Aligned_cols=26 Identities=8% Similarity=0.098 Sum_probs=21.8
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEe
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQF 115 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s 115 (137)
+.++.+.+++++|.+.|+.|...+.+
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04923 12 SHPGVAAKMFKALAEAGINIEMISTS 37 (63)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEcc
Confidence 44788999999999999999887754
No 125
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=44.36 E-value=84 Score=20.79 Aligned_cols=39 Identities=5% Similarity=0.013 Sum_probs=30.6
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeC--CeEEEEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSG--DRVIFSVLSK 128 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~--~~v~~ti~ak 128 (137)
+++|.|.++...|...|+.+-+.++..-+ +..=.||.+.
T Consensus 11 n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~ 51 (76)
T PRK06737 11 NDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAV 51 (76)
T ss_pred cCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEE
Confidence 78999999999999999999998888654 3333556554
No 126
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=43.36 E-value=70 Score=18.92 Aligned_cols=35 Identities=17% Similarity=0.163 Sum_probs=24.4
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFS 124 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~t 124 (137)
+.++.+.+++++|.+.|+.|.-.+.+..+..+.++
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~ 47 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQGSSEYNISFV 47 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceEEEE
Confidence 45788999999999999998666544333333333
No 127
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=43.25 E-value=87 Score=20.00 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=32.6
Q ss_pred eeEEEeeCCeeeEEEEecCCC-----cchHHHHHHHHHhCCcEEEEEEEeee
Q 039443 71 VMNITTSGSTLEVNLICGSNR-----NFMFHEIISVLEEGAAEVINVTQFNS 117 (137)
Q Consensus 71 ~v~v~~~~s~~~V~~~~~~~~-----~~~L~~il~~Le~~~L~V~~a~~s~~ 117 (137)
.+.+...+..+.|.+.+.... ...+..+-+.|...|+.+.+.+++.-
T Consensus 28 ~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 28 EVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 455667778888888776432 23467888999999999999888763
No 128
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=42.76 E-value=1.2e+02 Score=22.79 Aligned_cols=60 Identities=12% Similarity=0.113 Sum_probs=41.6
Q ss_pred eeEEEeeCCeeeEEEEecC-CCcchHHHHHHHHHhCCcEEEEEEEee-eCCeEEEEEEEEec
Q 039443 71 VMNITTSGSTLEVNLICGS-NRNFMFHEIISVLEEGAAEVINVTQFN-SGDRVIFSVLSKVH 130 (137)
Q Consensus 71 ~v~v~~~~s~~~V~~~~~~-~~~~~L~~il~~Le~~~L~V~~a~~s~-~~~~v~~ti~akv~ 130 (137)
.+++...+..-.+.++-.. ++-|.|+++++++-+.++.|++.+-+- .+|+.-.||.....
T Consensus 61 vfpf~~m~k~ri~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~s 122 (150)
T COG4492 61 VFPFYDMLKERIITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTS 122 (150)
T ss_pred eeehhhcccceEEEEEEEEhhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEch
Confidence 3444444433334443333 678999999999999999999988754 68887777766544
No 129
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.50 E-value=65 Score=18.31 Aligned_cols=28 Identities=21% Similarity=0.158 Sum_probs=23.0
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEee
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFN 116 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~ 116 (137)
.+.++.+.+++..|.+.|+.+...+.+.
T Consensus 9 ~~~~~~~~~i~~~L~~~~i~i~~i~~~~ 36 (61)
T cd04891 9 PDKPGVAAKIFSALAEAGINVDMIVQSV 36 (61)
T ss_pred CCCCcHHHHHHHHHHHcCCcEEEEEEcC
Confidence 3567889999999999999998776643
No 130
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.21 E-value=83 Score=19.45 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=24.0
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeee
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNS 117 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~ 117 (137)
..+||.|.++++.+.+ |.+|...+....
T Consensus 6 pdkPG~l~~~~~~i~~-~~nI~~~~~~~~ 33 (68)
T cd04885 6 PERPGALKKFLELLGP-PRNITEFHYRNQ 33 (68)
T ss_pred CCCCCHHHHHHHHhCC-CCcEEEEEEEcC
Confidence 3689999999999999 999998877654
No 131
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=42.15 E-value=1e+02 Score=26.31 Aligned_cols=44 Identities=9% Similarity=-0.058 Sum_probs=37.3
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEE-EEEEEEecCC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVI-FSVLSKVHFR 132 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~-~ti~akv~~~ 132 (137)
.+++|.|.++|..|...|+......+=+..+..+ |.|.+.+.+.
T Consensus 305 ~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg~ 349 (386)
T PRK10622 305 GQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQAN 349 (386)
T ss_pred CCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeCC
Confidence 4789999999999999999999999988766544 8888887764
No 132
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=41.86 E-value=76 Score=18.94 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=21.8
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEe
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQF 115 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s 115 (137)
.+.++.+.+++..|.+.|+.+.....+
T Consensus 10 ~~~~g~~~~i~~~L~~~~I~i~~i~~~ 36 (75)
T cd04913 10 PDKPGVAAKIFGALAEANINVDMIVQN 36 (75)
T ss_pred CCCCcHHHHHHHHHHHcCCeEEEEEeC
Confidence 356889999999999999999655443
No 133
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.75 E-value=58 Score=21.70 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039443 37 LDEATSYITHLQKNKESLERRRALLKE 63 (137)
Q Consensus 37 l~~Ai~YIk~L~~~v~~L~~~k~~l~~ 63 (137)
+..||+-|.-||=.+++|+++..++..
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~~ 39 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 678999999999999999988876543
No 134
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=41.41 E-value=95 Score=19.91 Aligned_cols=35 Identities=11% Similarity=0.069 Sum_probs=26.7
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVL 126 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~ 126 (137)
..++.+.++++.|.+.|+.|-....+ ++.+.+++.
T Consensus 13 ~~~g~~~~If~~la~~~I~vd~I~~s--~~~isftv~ 47 (73)
T cd04934 13 LSHGFLARIFAILDKYRLSVDLISTS--EVHVSMALH 47 (73)
T ss_pred cccCHHHHHHHHHHHcCCcEEEEEeC--CCEEEEEEe
Confidence 45889999999999999999888653 345555554
No 135
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=41.37 E-value=1.3e+02 Score=27.96 Aligned_cols=47 Identities=2% Similarity=-0.029 Sum_probs=37.3
Q ss_pred eeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEE
Q 039443 81 LEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSK 128 (137)
Q Consensus 81 ~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~ak 128 (137)
..|.++-...++|.|+++...|--+|+.|.+|++.+ +|...-.+.+.
T Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~v~ 593 (693)
T PRK00227 547 GFFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFDVR 593 (693)
T ss_pred CeEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEEEe
Confidence 356666655789999999999999999999999999 66655555444
No 136
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=39.82 E-value=52 Score=20.56 Aligned_cols=41 Identities=22% Similarity=0.381 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHH
Q 039443 8 KHRRTHMKDLISQLASLIPSSSKLSMPEILDEATSYITHLQKNKESLE 55 (137)
Q Consensus 8 R~RR~~mn~~~~~Lrsl~P~~~k~~k~~il~~Ai~YIk~L~~~v~~L~ 55 (137)
|.-|--+.+.+..+..++-. ++ .++|.+||+++-+.++.+.
T Consensus 17 R~~RHD~~NhLqvI~gllql-g~------~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQL-GK------YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-T-------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CC------HHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666532 33 6789999999999888773
No 137
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=39.80 E-value=90 Score=19.37 Aligned_cols=34 Identities=21% Similarity=0.135 Sum_probs=25.8
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIF 123 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ 123 (137)
..++.+.+++.+|.+.|+.|...+.+..+-.+.+
T Consensus 13 ~~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~ 46 (66)
T cd04915 13 STPGVLARGLAALAEAGIEPIAAHQSMRNVDVQF 46 (66)
T ss_pred CcchHHHHHHHHHHHCCCCEEEEEecCCeeEEEE
Confidence 4577899999999999999977766654444433
No 138
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=39.02 E-value=1e+02 Score=25.33 Aligned_cols=42 Identities=17% Similarity=0.276 Sum_probs=32.4
Q ss_pred EEEEecCCCcchHHHHHHHHHhCCcEEEEEEEe--eeCCeEEEE
Q 039443 83 VNLICGSNRNFMFHEIISVLEEGAAEVINVTQF--NSGDRVIFS 124 (137)
Q Consensus 83 V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s--~~~~~v~~t 124 (137)
|..+.|.+++|....|-..|-++|+.+++++.. +..+.+|-.
T Consensus 11 iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~ 54 (289)
T PRK13010 11 VLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMR 54 (289)
T ss_pred EEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEE
Confidence 344456689999999999999999999999986 334455533
No 139
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=38.51 E-value=90 Score=18.93 Aligned_cols=28 Identities=18% Similarity=0.325 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039443 35 EILDEATSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 35 ~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 62 (137)
.-.+.+-+|+..|.+++..+.++.+.+.
T Consensus 16 ~FQ~~v~~~lq~Lt~kL~~vs~RLe~LE 43 (47)
T PF10393_consen 16 AFQNKVTSALQSLTQKLDAVSKRLEALE 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778899999999999998887664
No 140
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=38.10 E-value=94 Score=18.89 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=20.6
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVT 113 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~ 113 (137)
..++.+.+++.+|.+.|+.|...+
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~~~~ 36 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEILQTA 36 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEE
Confidence 568999999999999999997443
No 141
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=37.85 E-value=33 Score=25.82 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=19.1
Q ss_pred ccHHHHHHHHHHHHHHHHHHhcC
Q 039443 3 RNIKEKHRRTHMKDLISQLASLI 25 (137)
Q Consensus 3 h~~~ER~RR~~mn~~~~~Lrsl~ 25 (137)
.+..||+||---...|.-||..=
T Consensus 15 nk~RERrRRAIaakIfaGLR~~G 37 (150)
T PF05687_consen 15 NKRRERRRRAIAAKIFAGLRAHG 37 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 35689999988888899999864
No 142
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=37.17 E-value=1.1e+02 Score=28.50 Aligned_cols=45 Identities=16% Similarity=0.223 Sum_probs=36.4
Q ss_pred ecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEE-EEEEEEecC
Q 039443 87 CGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVI-FSVLSKVHF 131 (137)
Q Consensus 87 ~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~-~ti~akv~~ 131 (137)
...+++|.|.+|+++|-+.+..|.+++....++.++ ..|..+|.+
T Consensus 633 ~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v~n 678 (701)
T COG0317 633 RAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEVKN 678 (701)
T ss_pred EEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEECc
Confidence 345889999999999999999999999988744444 577777665
No 143
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=36.61 E-value=99 Score=26.08 Aligned_cols=46 Identities=24% Similarity=0.423 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039443 14 MKDLISQLASLIPSSSKLSMPEILDEATSYITHLQKNKESLERRRALLKE 63 (137)
Q Consensus 14 mn~~~~~Lrsl~P~~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~ 63 (137)
+.+.....-.-+|-+++-+ |+++=+-|.+|+.+++.|+.+..++..
T Consensus 272 ~qe~~e~~L~~LnlPTRsE----lDe~~krL~ELrR~vr~L~k~l~~l~~ 317 (320)
T TIGR01834 272 QQEIVEALLKMLNLPTRSE----LDEAHQRIQQLRREVKSLKKRLGDLEA 317 (320)
T ss_pred HHHHHHHHHHhCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3333333333355444433 889999999999999999998877653
No 144
>PRK08198 threonine dehydratase; Provisional
Probab=36.01 E-value=2.6e+02 Score=23.46 Aligned_cols=42 Identities=19% Similarity=0.146 Sum_probs=33.7
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeee-----CCeEEEEEEEEecC
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNS-----GDRVIFSVLSKVHF 131 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~-----~~~v~~ti~akv~~ 131 (137)
++||.|.++++.+-+.|..|++.+.... .+.+-.+|.+++.+
T Consensus 336 D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~~ 382 (404)
T PRK08198 336 DRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETRG 382 (404)
T ss_pred CCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeCC
Confidence 6899999999999999999999888753 35666777776643
No 145
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=35.69 E-value=91 Score=18.06 Aligned_cols=26 Identities=8% Similarity=0.100 Sum_probs=22.0
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEe
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQF 115 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s 115 (137)
+.++.+.+++..|.+.|+.|...+.+
T Consensus 12 ~~~~~~~~i~~~L~~~~i~v~~i~~s 37 (63)
T cd04936 12 SHPGVAAKMFEALAEAGINIEMISTS 37 (63)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcc
Confidence 45788999999999999999888754
No 146
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=35.24 E-value=62 Score=19.65 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=14.9
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHhhh
Q 039443 36 ILDEATSYI----THLQKNKESLERRRALLKE 63 (137)
Q Consensus 36 il~~Ai~YI----k~L~~~v~~L~~~k~~l~~ 63 (137)
+|.++-++| ..+-+++.+|++++..|..
T Consensus 9 lLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~ 40 (46)
T PF08946_consen 9 LLQEHYDNIEQKIEDIDEQIAELEAKRQRLVD 40 (46)
T ss_dssp ------THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 4567788888888876643
No 147
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=34.59 E-value=1.2e+02 Score=20.15 Aligned_cols=32 Identities=19% Similarity=0.207 Sum_probs=23.8
Q ss_pred CCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039443 31 LSMPEILDEATSYITHLQKNKESLERRRALLKE 63 (137)
Q Consensus 31 ~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~ 63 (137)
|| .+||-.--.=|+.+-.++..|+...+.+..
T Consensus 1 MS-~NILl~Ir~dIk~vd~KVdaLq~~V~~l~~ 32 (75)
T PF05531_consen 1 MS-QNILLVIRQDIKAVDDKVDALQTQVDDLES 32 (75)
T ss_pred Cc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55 677777777888888888888877766544
No 148
>COG1259 Uncharacterized conserved protein [Function unknown]
Probab=33.71 E-value=1e+02 Score=23.26 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=31.3
Q ss_pred CcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEE-EEEEEecCC
Q 039443 91 RNFMFHEIISVLEEGAAEVINVTQFNSGDRVIF-SVLSKVHFR 132 (137)
Q Consensus 91 ~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~-ti~akv~~~ 132 (137)
|+.-.-=+.+.+++++..|..+.+...-+.+|| |+..+-++.
T Consensus 57 RP~tHdll~~i~~~l~~~v~kVvI~d~~d~tyyA~L~~~~~~~ 99 (151)
T COG1259 57 RPLTHDLLVEIFEELGARVEKVVIDDLIDNTYYATLILEQDDG 99 (151)
T ss_pred CCcHHHHHHHHHHHhCCcEEEEEEEEeccCeEEEEEEEEcCCc
Confidence 443333346778999999999999988666777 888877664
No 149
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=33.46 E-value=1e+02 Score=25.58 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=31.9
Q ss_pred HHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039443 19 SQLASLIPSSSKLSMPEILDEATSYITHLQKNKESLERRRALLKE 63 (137)
Q Consensus 19 ~~Lrsl~P~~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~ 63 (137)
..|.+.+|+.+..+-+ -...++..++.+-++|+.|+.+|..+..
T Consensus 169 ~~l~~~lPss~~~~~~-~~~~~v~~Lr~~l~~l~~lk~eR~~~~~ 212 (339)
T cd09235 169 EELANAIPSASPAKTL-QGSEAVQELRQLMEQVETIKAEREVIES 212 (339)
T ss_pred HHHHHhCCCCCCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466678884332222 4677889999999999999998887654
No 150
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=33.35 E-value=1e+02 Score=25.73 Aligned_cols=46 Identities=26% Similarity=0.338 Sum_probs=32.0
Q ss_pred HHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039443 18 ISQLASLIPSSSKLSMPEILDEATSYITHLQKNKESLERRRALLKE 63 (137)
Q Consensus 18 ~~~Lrsl~P~~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~ 63 (137)
...|.+.+|+.+..+...-+..+|..++.+-++|+.|+.+|..+..
T Consensus 171 ~~~l~~~~Ps~~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~~ 216 (353)
T cd09236 171 ERDLENFVPSSRRPSIPPELERHVRALRVSLEELDRLESRRRRKVE 216 (353)
T ss_pred HHHHHHhCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446668898433233335677888888888999999988877644
No 151
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=32.60 E-value=1.3e+02 Score=26.52 Aligned_cols=43 Identities=5% Similarity=0.068 Sum_probs=33.7
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeCCe-EEEEEEEEecC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSGDR-VIFSVLSKVHF 131 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~-v~~ti~akv~~ 131 (137)
.+++|.|.++|..|.+.|+.+.+..+-+..+. --|.|.+.+.+
T Consensus 24 ~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~eg 67 (436)
T TIGR01268 24 KEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFDE 67 (436)
T ss_pred CCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEec
Confidence 46799999999999999999999999776333 23666666654
No 152
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=31.98 E-value=2.3e+02 Score=24.35 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=46.5
Q ss_pred CHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC---CCceeEEEeeCCeeeEEEEecCCCcchHHHH---HHHHHhC
Q 039443 32 SMPEILDEATSYITHLQKNKESLERRRALLKEEDHY---EPTVMNITTSGSTLEVNLICGSNRNFMFHEI---ISVLEEG 105 (137)
Q Consensus 32 ~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~~~~~---~~p~v~v~~~~s~~~V~~~~~~~~~~~L~~i---l~~Le~~ 105 (137)
+.++.-..|-.=|+.|+.++.+|+++...|.-..++ ...-++++-...+-+..++ .|-|.++ -.....-
T Consensus 73 ~D~em~ema~~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalF-----agDLfrMY~rYAe~kgW 147 (363)
T COG0216 73 KDPEMREMAEEEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALF-----AGDLFRMYSRYAESKGW 147 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHH-----HHHHHHHHHHHHHhCCC
Confidence 456677778888888888888888887766543332 2223333321111111110 1122222 2223344
Q ss_pred CcEEEEEEEeeeCCe
Q 039443 106 AAEVINVTQFNSGDR 120 (137)
Q Consensus 106 ~L~V~~a~~s~~~~~ 120 (137)
.++|++++-+..||.
T Consensus 148 k~ei~s~se~~~GG~ 162 (363)
T COG0216 148 KVEILSASESELGGY 162 (363)
T ss_pred EEEEeecCcccCCCc
Confidence 678888888888883
No 153
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=31.11 E-value=1.1e+02 Score=20.59 Aligned_cols=28 Identities=29% Similarity=0.325 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039443 36 ILDEATSYITHLQKNKESLERRRALLKE 63 (137)
Q Consensus 36 il~~Ai~YIk~L~~~v~~L~~~k~~l~~ 63 (137)
-|..|++-|.-|+-.|++|+.+...+..
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~~ 39 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLSQ 39 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778999999999999999988766543
No 154
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=30.60 E-value=87 Score=16.26 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 039443 44 ITHLQKNKESLERRRA 59 (137)
Q Consensus 44 Ik~L~~~v~~L~~~k~ 59 (137)
|..|+.+|.+|+.+..
T Consensus 3 ~~rlr~rI~dLer~L~ 18 (23)
T PF04508_consen 3 MNRLRNRISDLERQLS 18 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777888877654
No 155
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=30.52 E-value=76 Score=19.67 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 039443 35 EILDEATSYITHLQKNKESLE 55 (137)
Q Consensus 35 ~il~~Ai~YIk~L~~~v~~L~ 55 (137)
..+.+|+.|++.++.++..|-
T Consensus 31 ~p~~EA~~f~~~ie~qL~~Lt 51 (52)
T PF03791_consen 31 RPFQEAMEFCREIEQQLSSLT 51 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 356799999999999988763
No 156
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=30.41 E-value=2.1e+02 Score=20.51 Aligned_cols=31 Identities=26% Similarity=0.251 Sum_probs=24.9
Q ss_pred HHHHHhCCcEEEEEEEeeeCCeEEE-EEEEEe
Q 039443 99 ISVLEEGAAEVINVTQFNSGDRVIF-SVLSKV 129 (137)
Q Consensus 99 l~~Le~~~L~V~~a~~s~~~~~v~~-ti~akv 129 (137)
.+.|+.+|..|..+.+....|.+|| ++...-
T Consensus 59 ~~~l~~lg~~v~~V~I~~~~dg~f~A~L~l~~ 90 (135)
T PF02577_consen 59 SDLLEALGAEVERVVIDDLEDGVFYARLVLRQ 90 (135)
T ss_dssp HHHHHHTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHcCCEEEEEEEEEEECCEEEEEEEEec
Confidence 5678888999999999998666666 777763
No 157
>PRK08818 prephenate dehydrogenase; Provisional
Probab=29.93 E-value=3.5e+02 Score=23.03 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=25.1
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeee
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNS 117 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~ 117 (137)
+++|.|.+|+..|-..|+.+.+..+...
T Consensus 305 d~pG~L~~vl~~la~~~INit~Ies~~~ 332 (370)
T PRK08818 305 DRPGSLRTLLHVFEQHGVNLSSIHSSRT 332 (370)
T ss_pred CCCChHHHHHHHHHHcCcccceEEEecc
Confidence 7899999999999999999999988443
No 158
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=29.83 E-value=2.9e+02 Score=22.99 Aligned_cols=101 Identities=13% Similarity=0.030 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCceeEEEeeC--------Ceee
Q 039443 11 RTHMKDLISQLASLIPSSSKLSMPEILDEATSYITHLQKNKESLERRRALLKEEDHYEPTVMNITTSG--------STLE 82 (137)
Q Consensus 11 R~~mn~~~~~Lrsl~P~~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~~~~~~~p~v~v~~~~--------s~~~ 82 (137)
...|.+.+..+|+++|....+..+---+.|.-|--+.-+-++.+...+-.. ..-++..++..+|..| .++-
T Consensus 53 l~dl~~~l~~~r~~~~~~~~l~~al~aG~at~~aaE~iEAl~y~~~~~~~~-~~~~G~i~D~iiR~~GvplV~G~IPGva 131 (287)
T cd01917 53 LGDLKPLLNRLRAQVEEVLTFENARLAGEATLYAAEIIEALRYLKSEPPYK-PPWTGFIGDPIVRGLGIKMVDWTIPGEA 131 (287)
T ss_pred HHHHHHHHHHHHHhcCcccchhHHHHhhHHHHHHHHHHHHHHHhcCCCCcc-ccccCCCccHHHHHcCCceecCCCCeEE
Confidence 356788888999999986666666666777777777777666665432110 0112223333444333 2344
Q ss_pred EEEEecCCCcchHHHHHHHHHhCCcEEEEEE
Q 039443 83 VNLICGSNRNFMFHEIISVLEEGAAEVINVT 113 (137)
Q Consensus 83 V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~ 113 (137)
+.+-|+. ..-.+.+|.+.|.+-|+=|.-+-
T Consensus 132 ~ivG~a~-~~e~~~~I~~e~q~r~~lv~l~G 161 (287)
T cd01917 132 VILGRAK-DSKALKKIVDDLMGRGFMLFLCD 161 (287)
T ss_pred EEEecCC-ChHHHHHHHHHHHHCCcEEEEec
Confidence 4444443 44567889999998888776554
No 159
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=29.65 E-value=1.3e+02 Score=20.37 Aligned_cols=27 Identities=19% Similarity=0.326 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039443 37 LDEATSYITHLQKNKESLERRRALLKE 63 (137)
Q Consensus 37 l~~Ai~YIk~L~~~v~~L~~~k~~l~~ 63 (137)
|..+-.-|-++|.++++|+.++.++..
T Consensus 10 ieK~k~Kiae~Q~rlK~Le~qk~E~EN 36 (83)
T PF14193_consen 10 IEKTKEKIAELQARLKELEAQKTEAEN 36 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788999999999998876653
No 160
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=29.06 E-value=78 Score=24.42 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 039443 44 ITHLQKNKESLERRRALLKEE 64 (137)
Q Consensus 44 Ik~L~~~v~~L~~~k~~l~~~ 64 (137)
|..|++++++|+++.+.|...
T Consensus 1 I~~LE~~~~~l~~e~~~Lk~~ 21 (176)
T PF10737_consen 1 IQRLEQRLQELQQELEELKQQ 21 (176)
T ss_pred ChHHHHHHHHHHHHHHHHHhC
Confidence 578999999999998888653
No 161
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=28.89 E-value=1.2e+02 Score=17.42 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=27.2
Q ss_pred CCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039443 31 LSMPEILDEATSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 31 ~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 62 (137)
.||..|..+.+.-.++|-.--..|+.+.+++.
T Consensus 3 Vdk~rifmEnV~AvqeLck~t~~Le~rI~ele 34 (36)
T PF13887_consen 3 VDKERIFMENVGAVQELCKLTDNLETRIDELE 34 (36)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 47888999999999999888888888887654
No 162
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=28.85 E-value=1.8e+02 Score=22.35 Aligned_cols=46 Identities=2% Similarity=0.094 Sum_probs=35.4
Q ss_pred EecCCCcchHHHHHHHHHhCCcEEEEEEEeeeC----CeEEEEEEEEecC
Q 039443 86 ICGSNRNFMFHEIISVLEEGAAEVINVTQFNSG----DRVIFSVLSKVHF 131 (137)
Q Consensus 86 ~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~----~~v~~ti~akv~~ 131 (137)
+.+..+||.+.++-..|-++|+.+.+.+..+.+ +.-.|.+++++.-
T Consensus 100 v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~l 149 (190)
T PRK11589 100 VEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHS 149 (190)
T ss_pred EEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEc
Confidence 357789999999999999999999999887764 3445555555543
No 163
>PRK11020 hypothetical protein; Provisional
Probab=28.42 E-value=1.6e+02 Score=21.27 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039443 7 EKHRRTHMKDLISQLASLIPSSSKLSMPEILDEATSYITHLQKNKESLERRRAL 60 (137)
Q Consensus 7 ER~RR~~mn~~~~~Lrsl~P~~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~ 60 (137)
+.+==+++|+++..+|-=++.......+.++.+--+-|..|..++..|..++..
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~~ 56 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQSQ 56 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444457789999999887877666667788888888888888888888876544
No 164
>PRK06382 threonine dehydratase; Provisional
Probab=28.12 E-value=1.7e+02 Score=24.85 Aligned_cols=41 Identities=7% Similarity=0.039 Sum_probs=32.3
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEe----ee-CCeEEEEEEEEec
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQF----NS-GDRVIFSVLSKVH 130 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s----~~-~~~v~~ti~akv~ 130 (137)
+++|.|.++...|.++|.+|++.... .. .+....+|+++..
T Consensus 339 D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~ 384 (406)
T PRK06382 339 DRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR 384 (406)
T ss_pred CCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC
Confidence 68999999999999999999988764 22 3455667777665
No 165
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=27.94 E-value=1.6e+02 Score=19.03 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=28.3
Q ss_pred eeeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEe
Q 039443 80 TLEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQF 115 (137)
Q Consensus 80 ~~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s 115 (137)
.+.|.+.-+....|+-.++-+.|+..|+.+.+..-.
T Consensus 3 ~v~V~VlNgt~~~GlA~~~a~~L~~~Gf~v~~~~n~ 38 (90)
T PF13399_consen 3 DVRVEVLNGTGVSGLAARVADALRNRGFTVVEVGNA 38 (90)
T ss_pred ceEEEEEECcCCcCHHHHHHHHHHHCCCceeecCCC
Confidence 345666667778899999999999999999765443
No 166
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=27.68 E-value=1e+02 Score=18.68 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 039443 44 ITHLQKNKESLERRRALLKE 63 (137)
Q Consensus 44 Ik~L~~~v~~L~~~k~~l~~ 63 (137)
|..|++++..|+.+...|..
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~ 20 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQA 20 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHH
Confidence 45677778888777766544
No 167
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=27.26 E-value=2.5e+02 Score=21.41 Aligned_cols=30 Identities=3% Similarity=0.025 Sum_probs=26.9
Q ss_pred cCCCcchHHHHHHHHHhCCcEEEEEEEeee
Q 039443 88 GSNRNFMFHEIISVLEEGAAEVINVTQFNS 117 (137)
Q Consensus 88 ~~~~~~~L~~il~~Le~~~L~V~~a~~s~~ 117 (137)
..++||.|.+|...|-..|+.+.+.++...
T Consensus 9 v~n~PGVL~RIt~lFsrRg~NIesLsv~~t 38 (174)
T CHL00100 9 VEDESGVLTRIAGLFARRGFNIESLAVGPA 38 (174)
T ss_pred EeCcCCHHHHHHHHHHhCCCCeeEEEeeEc
Confidence 457899999999999999999999999763
No 168
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=27.16 E-value=1.7e+02 Score=18.58 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039443 34 PEILDEATSYITHLQKNKESLERRRALL 61 (137)
Q Consensus 34 ~~il~~Ai~YIk~L~~~v~~L~~~k~~l 61 (137)
.+-|.+|=...++|+..|+.|+.+.+.+
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568899999999999999999988764
No 169
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=26.24 E-value=1.9e+02 Score=19.63 Aligned_cols=39 Identities=8% Similarity=-0.000 Sum_probs=30.8
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCC--eEEEEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGD--RVIFSVLSK 128 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~--~v~~ti~ak 128 (137)
+++|.|.+|-..|-..|+.+-+.+++.-.+ .-=.||.+.
T Consensus 11 N~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~ 51 (84)
T PRK13562 11 DQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVD 51 (84)
T ss_pred CCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEe
Confidence 789999999999999999998888877644 333566654
No 170
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=25.62 E-value=16 Score=34.00 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=47.8
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCC-----CCCCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 039443 1 AQRNIKEKHRRTHMKDLISQLASLIPS-----SSKLSMPEILDEATSYITHLQKNKESLERRR 58 (137)
Q Consensus 1 ~~h~~~ER~RR~~mn~~~~~Lrsl~P~-----~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k 58 (137)
+.|..+|.+||...+-.|..|.++.-+ ..|+.++.-+.....||..++.....+.++-
T Consensus 653 it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e~ 715 (856)
T KOG3582|consen 653 ITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEEA 715 (856)
T ss_pred ccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchhh
Confidence 458889999999999999998888765 4678888889999999998887776666543
No 171
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=25.31 E-value=3.7e+02 Score=24.31 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 039443 8 KHRRTHMKDLISQLASLIPS 27 (137)
Q Consensus 8 R~RR~~mn~~~~~Lrsl~P~ 27 (137)
.++..++++....|+...|.
T Consensus 49 ~~~~~~~~~~l~~L~~~~~~ 68 (646)
T PRK05771 49 RSLLTKLSEALDKLRSYLPK 68 (646)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 35666788888888888776
No 172
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=24.83 E-value=2.1e+02 Score=18.78 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=20.2
Q ss_pred HHHHHHHHhCCcEEEEEEEeeeCC
Q 039443 96 HEIISVLEEGAAEVINVTQFNSGD 119 (137)
Q Consensus 96 ~~il~~Le~~~L~V~~a~~s~~~~ 119 (137)
+.|.++|.++|++|.++.--...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~ 25 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRD 25 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccC
Confidence 468899999999999998877655
No 173
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.00 E-value=91 Score=19.22 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039443 44 ITHLQKNKESLERRRAL 60 (137)
Q Consensus 44 Ik~L~~~v~~L~~~k~~ 60 (137)
++.+++++++++++.++
T Consensus 50 ~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 50 IRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45666666666666554
No 174
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric. This model describes tryptophan 5-monooxygenase, a member of the family of tetrameric, biopterin-dependent aromatic amino acid hydroxylases found in metazoans. It is closely related to tetrameric phenylalanine-4-hydroxylase and tyrosine 3-monooxygenase, and more distantly related to the monomeric phenylalanine-4-hydroxylase found in some Gram-negative bacteria.
Probab=23.94 E-value=1.9e+02 Score=25.67 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=32.4
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeE-E-EEEEEEec
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSGDRV-I-FSVLSKVH 130 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v-~-~ti~akv~ 130 (137)
.+++|.|.++|..|+..|+.+.+..+-+..+.. - |.|.+.+.
T Consensus 39 ~d~pGaL~~vL~vFa~~gINLThIESRPsk~~~~e~Y~FfVD~E 82 (464)
T TIGR01270 39 SNVVGDLSKAIAIFQDRHINILHLESRDSKDGTSKTMDVLVDVE 82 (464)
T ss_pred CCCchHHHHHHHHHHHCCCCEEEEECCcCCCCCCccEEEEEEEE
Confidence 467899999999999999999999997764332 2 55555554
No 175
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=23.92 E-value=1.1e+02 Score=23.42 Aligned_cols=43 Identities=14% Similarity=0.233 Sum_probs=36.7
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeee---CCeEEEEEEEEecC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNS---GDRVIFSVLSKVHF 131 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~---~~~v~~ti~akv~~ 131 (137)
..+||.|.++++=|-+.|..|++...+.- ++++-..|..++..
T Consensus 13 ~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~ 58 (170)
T COG2061 13 KDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDR 58 (170)
T ss_pred cCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEecc
Confidence 36899999999999999999999999886 77877777777663
No 176
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=23.52 E-value=3.3e+02 Score=22.51 Aligned_cols=43 Identities=5% Similarity=0.050 Sum_probs=33.2
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEE-EEEEEEecCC
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVI-FSVLSKVHFR 132 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~-~ti~akv~~~ 132 (137)
++||.|+++|..|-..|++.--..+=+..+... |-|.+.+.+.
T Consensus 203 n~PGaL~~~L~~Fa~~gINlTkIESRP~k~~~~~Y~F~iD~eg~ 246 (279)
T COG0077 203 NKPGALYKALGVFAKRGINLTKIESRPLKTGLGEYLFFIDIEGH 246 (279)
T ss_pred CCCchHHHHHHHHHHcCcceeeEeecccCCCCeeEEEEEEEecC
Confidence 789999999999999999988888877654333 5666665553
No 177
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.89 E-value=2.2e+02 Score=20.41 Aligned_cols=33 Identities=9% Similarity=0.213 Sum_probs=27.0
Q ss_pred CCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039443 30 KLSMPEILDEATSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 30 k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 62 (137)
..||+.+.+.--.-.+.++++|+.|+.+++-+.
T Consensus 62 l~dk~a~~s~leak~k~see~IeaLqkkK~YlE 94 (114)
T KOG3501|consen 62 LSDKAAVRSHLEAKMKSSEEKIEALQKKKTYLE 94 (114)
T ss_pred cCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 468888888888888999999999998887654
No 178
>KOG1748 consensus Acyl carrier protein/NADH-ubiquinone oxidoreductase, NDUFAB1/SDAP subunit [Energy production and conversion; Lipid transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.59 E-value=48 Score=24.44 Aligned_cols=20 Identities=15% Similarity=0.248 Sum_probs=16.7
Q ss_pred CCCCHHhHHHHHHHHHHHHH
Q 039443 29 SKLSMPEILDEATSYITHLQ 48 (137)
Q Consensus 29 ~k~~k~~il~~Ai~YIk~L~ 48 (137)
.+.||...+++|++||-++.
T Consensus 108 ~dAdki~t~~da~~yI~~~~ 127 (131)
T KOG1748|consen 108 EDADKIKTVRDAADYIADKP 127 (131)
T ss_pred chhhhhCCHHHHHHHHHhcc
Confidence 46788888999999998764
No 179
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=22.26 E-value=1.3e+02 Score=15.32 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 039443 45 THLQKNKESLERRRAL 60 (137)
Q Consensus 45 k~L~~~v~~L~~~k~~ 60 (137)
++|+...+.|+++.+.
T Consensus 4 k~lEa~~qkLe~e~q~ 19 (21)
T PF02370_consen 4 KQLEADHQKLEAEKQI 19 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6788888888887754
No 180
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=21.92 E-value=4.7e+02 Score=21.72 Aligned_cols=41 Identities=7% Similarity=0.160 Sum_probs=32.1
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeee-----CCeEEEEEEEEec
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNS-----GDRVIFSVLSKVH 130 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~-----~~~v~~ti~akv~ 130 (137)
+++|.|.++++.+.+.|..|++...... .+....+|.++..
T Consensus 314 D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~ 359 (380)
T TIGR01127 314 DRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR 359 (380)
T ss_pred CCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC
Confidence 7899999999999999999999876521 3455666776664
No 181
>PF12180 EABR: TSG101 and ALIX binding domain of CEP55; InterPro: IPR022008 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. This domain is the active domain of CEP55. CEP55 is a protein involved in cytokinesis, specifically in abscission of the plasma membrane at the midbody. To perform this function, CEP55 complexes with ESCRT-I (by a Proline rich sequence in its TSG101 domain) and ALIX. This is the domain on CEP55 which binds to both TSG101 and ALIX. It also acts as a hinge between the N and C termini. This domain is called EABR. ; PDB: 3E1R_A.
Probab=21.38 E-value=1.1e+02 Score=17.52 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHH
Q 039443 42 SYITHLQKNKESL 54 (137)
Q Consensus 42 ~YIk~L~~~v~~L 54 (137)
+|++.|..++.+|
T Consensus 23 ~YV~~L~~rl~el 35 (35)
T PF12180_consen 23 AYVRGLLARLKEL 35 (35)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC
Confidence 5888888887765
No 182
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=21.25 E-value=99 Score=23.17 Aligned_cols=51 Identities=6% Similarity=0.107 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 039443 8 KHRRTHMKDLISQLASLIPSSSKLSMPEILDEATSYITHLQKNKESLERRRA 59 (137)
Q Consensus 8 R~RR~~mn~~~~~Lrsl~P~~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~ 59 (137)
...+..+.....+++.++-... .|++...+.=..||+.++++++++++..+
T Consensus 121 ~~~~~~~~~i~~~~r~l~~e~~-~d~a~~~~~~~e~~~~~~~~~~~i~~a~~ 171 (174)
T COG1076 121 VEIKADQDAIKKAYRKLLSEQH-PDKAAAKGLKLEFIEKLKEKLQEIQEAYE 171 (174)
T ss_pred CchhhhHHHHHHHHHHHHHhcC-HHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 3445556666777777775544 88888888889999999999999988654
No 183
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=21.03 E-value=1.5e+02 Score=19.41 Aligned_cols=38 Identities=29% Similarity=0.404 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCC------CCCCCHHhHHHHHHHHH
Q 039443 7 EKHRRTHMKDLISQLASLIPS------SSKLSMPEILDEATSYI 44 (137)
Q Consensus 7 ER~RR~~mn~~~~~Lrsl~P~------~~k~~k~~il~~Ai~YI 44 (137)
-..|+.++........+++-. .++++.......|+++|
T Consensus 5 ~~~~k~~l~~~v~~a~~~i~~~~~~~~~g~ls~eea~~~a~~~l 48 (95)
T PF08269_consen 5 LEERKEQLKNVVESAISLIESYYAQAQAGKLSEEEAQQQAREAL 48 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHC-STT-----TTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 344555555555555554433 34566666666666666
No 184
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=20.71 E-value=3e+02 Score=25.59 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC---------CCCCCHHhHHHHHHHHHHHHHHHHHHHH
Q 039443 6 KEKHRRTHMKDLISQLASLIPS---------SSKLSMPEILDEATSYITHLQKNKESLE 55 (137)
Q Consensus 6 ~ER~RR~~mn~~~~~Lrsl~P~---------~~k~~k~~il~~Ai~YIk~L~~~v~~L~ 55 (137)
.|..|+..- ..|.|.+|+ .++.|--.++.-|+..|.+|+..+++.+
T Consensus 284 ve~ar~~F~----~EL~si~p~l~~~d~~~~L~~~dln~liahah~rvdql~~~l~d~k 338 (657)
T KOG1854|consen 284 VEKARHQFE----QELESILPGLSLADKEENLSEDDLNKLIAHAHTRVDQLQKELEDQK 338 (657)
T ss_pred HHHHHHHHH----HHHHHhcCCCchhhhhhhccHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555433 458999995 3456666889999999999999999844
No 185
>PRK00341 hypothetical protein; Provisional
Probab=20.68 E-value=2.7e+02 Score=18.82 Aligned_cols=44 Identities=14% Similarity=0.087 Sum_probs=28.9
Q ss_pred cCCCcchHHHHHHHHHhCC---cEEEEEEEeeeCCeEEEEEEEEecC
Q 039443 88 GSNRNFMFHEIISVLEEGA---AEVINVTQFNSGDRVIFSVLSKVHF 131 (137)
Q Consensus 88 ~~~~~~~L~~il~~Le~~~---L~V~~a~~s~~~~~v~~ti~akv~~ 131 (137)
|...+.....|.++++.+. .+.++..-|.-|..+-+|+.+.|.+
T Consensus 24 G~~~~~~~~~V~~iv~~~~~~~~~~~~~k~Ss~GkY~S~tv~i~~~s 70 (91)
T PRK00341 24 GDTGVGFKDLVIEILQKHADVDLSTLAERQSSNGKYTTVQLHIVATD 70 (91)
T ss_pred EcCchhHHHHHHHHHHHhCCCcccceeeccCCCCEEEEEEEEEEECC
Confidence 4456777778888887664 2233445566566677888888765
No 186
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.62 E-value=3.9e+02 Score=21.76 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=17.1
Q ss_pred cchHHHHHHHHHhCCcEEEEEE
Q 039443 92 NFMFHEIISVLEEGAAEVINVT 113 (137)
Q Consensus 92 ~~~L~~il~~Le~~~L~V~~a~ 113 (137)
+..|-.++..|...|.+-++.|
T Consensus 138 ~~dl~~viNeL~~sGAEaIsIn 159 (247)
T COG3879 138 DDDLQAVINELNISGAEAISIN 159 (247)
T ss_pred HHHHHHHHHHHHhccchheeEC
Confidence 3456789999999999877655
No 187
>KOG3155 consensus Actin-related protein Arp2/3 complex, subunit ARPC3 [Cytoskeleton]
Probab=20.59 E-value=77 Score=24.34 Aligned_cols=14 Identities=36% Similarity=0.543 Sum_probs=11.7
Q ss_pred CHHhHHHHHHHHHH
Q 039443 32 SMPEILDEATSYIT 45 (137)
Q Consensus 32 ~k~~il~~Ai~YIk 45 (137)
++-+|++|||.|.|
T Consensus 37 ~d~DIvDEai~yFk 50 (173)
T KOG3155|consen 37 KDTDIVDEAIYYFK 50 (173)
T ss_pred CccchHHHHHHHhh
Confidence 55589999999876
No 188
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=20.25 E-value=3.7e+02 Score=19.87 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=26.8
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCe
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDR 120 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~ 120 (137)
+++|.|..+...|.+.|+.+-..++..-++.
T Consensus 12 Nk~GRL~~~~~~L~eagINiRA~tiAdt~dF 42 (142)
T COG4747 12 NKPGRLASVANKLKEAGINIRAFTIADTGDF 42 (142)
T ss_pred CCcchHHHHHHHHHHcCCceEEEEeccccCc
Confidence 6899999999999999999988888766663
No 189
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=20.14 E-value=5e+02 Score=26.71 Aligned_cols=51 Identities=12% Similarity=0.154 Sum_probs=36.5
Q ss_pred eeEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeC---C--eEEEEEEEEecCC
Q 039443 81 LEVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSG---D--RVIFSVLSKVHFR 132 (137)
Q Consensus 81 ~~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~---~--~v~~ti~akv~~~ 132 (137)
+.+.+.. ...+..|++++-.|+++||.|+...--.+. + ..+|.|.......
T Consensus 490 ~~lkiy~-~~~~~~Ls~vlPilenlGl~V~~e~~~~i~~~~~~~~~i~~F~l~~~~~ 545 (1528)
T PF05088_consen 490 LRLKIYH-PGEPLPLSDVLPILENLGLRVIDERPYEIRRADGRRVWIHDFGLQYPDG 545 (1528)
T ss_pred EEEEEEc-CCCCcCHHHHHHHHHhCCCEEEEEecceeecCCCceEEEEEEEEecCCC
Confidence 4445543 356889999999999999999998765552 2 3446777766553
Done!