Query 039443
Match_columns 137
No_of_seqs 126 out of 676
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 16:29:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039443.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039443hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 7.7E-18 2.6E-22 113.4 7.6 62 2-63 9-71 (82)
2 1nkp_B MAX protein, MYC proto- 99.7 2.7E-17 9.3E-22 110.6 7.8 62 2-63 5-68 (83)
3 1hlo_A Protein (transcription 99.7 2.2E-17 7.5E-22 110.5 7.3 61 2-62 15-77 (80)
4 1nlw_A MAD protein, MAX dimeri 99.7 1.5E-16 5.1E-21 106.8 8.3 61 2-62 4-67 (80)
5 1nkp_A C-MYC, MYC proto-oncoge 99.7 2.2E-16 7.4E-21 107.7 7.9 61 2-62 9-72 (88)
6 4h10_B Circadian locomoter out 99.6 1.4E-15 4.8E-20 100.0 6.2 54 2-55 11-65 (71)
7 1a0a_A BHLH, protein (phosphat 99.6 5.8E-16 2E-20 99.6 3.9 51 1-51 4-61 (63)
8 1an4_A Protein (upstream stimu 99.6 5.6E-16 1.9E-20 99.7 2.8 51 1-51 7-63 (65)
9 4ati_A MITF, microphthalmia-as 99.6 9.2E-15 3.1E-19 104.5 7.7 57 2-58 30-90 (118)
10 3u5v_A Protein MAX, transcript 99.5 2.9E-15 1E-19 99.6 4.0 54 2-55 8-65 (76)
11 2ql2_B Neurod1, neurogenic dif 99.5 1.8E-14 6E-19 91.8 5.9 51 2-52 5-58 (60)
12 1mdy_A Protein (MYOD BHLH doma 99.5 1.6E-14 5.3E-19 94.2 4.6 51 2-52 15-67 (68)
13 4h10_A ARYL hydrocarbon recept 99.5 1.9E-14 6.4E-19 95.1 3.2 48 2-49 12-63 (73)
14 2lfh_A DNA-binding protein inh 99.2 2.3E-12 7.8E-17 83.7 2.3 46 4-49 19-67 (68)
15 4f3l_A Mclock, circadian locom 99.0 2E-10 6.8E-15 93.8 6.2 49 2-50 15-64 (361)
16 4aya_A DNA-binding protein inh 98.9 1.9E-09 6.3E-14 74.5 6.4 48 6-53 32-82 (97)
17 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 1.5E-09 5E-14 89.7 5.4 49 2-50 16-68 (387)
18 4ath_A MITF, microphthalmia-as 98.4 1.4E-06 4.7E-11 58.5 7.1 47 11-57 4-54 (83)
19 1zpv_A ACT domain protein; str 95.2 0.18 6E-06 32.3 8.6 45 87-131 11-55 (91)
20 2nyi_A Unknown protein; protei 94.2 0.25 8.6E-06 36.6 8.2 46 85-130 9-54 (195)
21 1u8s_A Glycine cleavage system 94.0 0.27 9.3E-06 36.0 8.1 47 82-129 8-54 (192)
22 2ko1_A CTR148A, GTP pyrophosph 92.6 0.93 3.2E-05 28.3 7.9 44 88-131 12-55 (88)
23 2nyi_A Unknown protein; protei 86.3 2.5 8.4E-05 31.1 7.0 47 83-130 96-148 (195)
24 3he4_B Synzip5; heterodimeric 79.6 2.9 9.9E-05 23.9 3.8 26 36-61 4-29 (46)
25 1u8s_A Glycine cleavage system 79.1 7.4 0.00025 28.1 7.0 35 84-118 96-130 (192)
26 2jhe_A Transcription regulator 78.6 6.2 0.00021 27.2 6.3 30 88-117 7-36 (190)
27 3p96_A Phosphoserine phosphata 78.1 8.5 0.00029 30.9 7.7 48 84-131 15-62 (415)
28 2l5g_A GPS2 protein, G protein 74.8 8.3 0.00028 21.6 4.7 31 31-61 4-34 (38)
29 2oqq_A Transcription factor HY 69.9 5.5 0.00019 22.9 3.3 22 42-63 3-24 (42)
30 1zme_C Proline utilization tra 69.4 5.2 0.00018 24.1 3.5 23 41-63 43-65 (70)
31 2er8_A Regulatory protein Leu3 65.6 4.6 0.00016 24.6 2.7 22 41-62 48-69 (72)
32 1xkm_B Distinctin chain B; por 60.5 13 0.00043 18.8 3.2 20 34-53 3-22 (26)
33 1gd2_E Transcription factor PA 60.5 9 0.00031 24.2 3.3 21 41-61 28-48 (70)
34 2f1f_A Acetolactate synthase i 58.4 16 0.00053 26.5 4.8 40 89-128 11-52 (164)
35 1y7p_A Hypothetical protein AF 57.3 25 0.00085 27.1 5.9 43 88-132 11-58 (223)
36 2f06_A Conserved hypothetical 57.1 42 0.0014 22.7 7.3 38 89-126 80-117 (144)
37 3n0v_A Formyltetrahydrofolate 56.7 37 0.0013 26.6 7.1 44 86-129 13-58 (286)
38 2wt7_A Proto-oncogene protein 56.1 31 0.0011 20.8 6.5 43 7-62 1-43 (63)
39 2pc6_A Probable acetolactate s 53.8 18 0.00062 26.3 4.5 39 90-128 13-53 (165)
40 3lou_A Formyltetrahydrofolate 53.5 46 0.0016 26.1 7.2 45 86-130 15-61 (292)
41 1dh3_A Transcription factor CR 52.7 16 0.00056 21.7 3.5 21 42-62 22-42 (55)
42 3obi_A Formyltetrahydrofolate 52.2 52 0.0018 25.7 7.3 46 86-131 11-58 (288)
43 1kd8_B GABH BLL, GCN4 acid bas 50.8 18 0.00063 20.0 3.1 19 44-62 3-21 (36)
44 2wq1_A General control protein 49.4 21 0.00071 19.4 3.1 19 44-62 2-20 (33)
45 2fgc_A Acetolactate synthase, 49.3 43 0.0015 25.1 6.0 39 90-128 38-78 (193)
46 3o1l_A Formyltetrahydrofolate 49.1 84 0.0029 24.8 8.1 47 83-129 24-72 (302)
47 1pyi_A Protein (pyrimidine pat 47.8 17 0.00058 23.1 3.2 23 41-63 47-69 (96)
48 3nrb_A Formyltetrahydrofolate 45.3 73 0.0025 24.9 7.1 45 85-129 11-57 (287)
49 2cqn_A Formin-binding protein 44.4 58 0.002 20.5 5.4 29 11-39 9-37 (77)
50 1jnm_A Proto-oncogene C-JUN; B 44.4 26 0.00088 21.1 3.5 22 41-62 21-42 (62)
51 1hwt_C Protein (heme activator 44.1 8.1 0.00028 23.9 1.1 21 41-61 57-77 (81)
52 3luy_A Probable chorismate mut 43.3 89 0.0031 25.0 7.5 44 90-133 217-261 (329)
53 1kd8_A GABH AIV, GCN4 acid bas 43.3 18 0.00063 20.0 2.3 19 44-62 3-21 (36)
54 2jee_A YIIU; FTSZ, septum, coi 43.0 39 0.0013 21.9 4.3 26 36-61 14-39 (81)
55 3coq_A Regulatory protein GAL4 42.2 25 0.00086 21.8 3.3 22 41-62 44-65 (89)
56 3c3g_A Alpha/beta peptide with 41.8 32 0.0011 18.6 3.1 19 44-62 2-20 (33)
57 2dgc_A Protein (GCN4); basic d 40.2 32 0.0011 20.9 3.5 22 41-62 29-50 (63)
58 2oxj_A Hybrid alpha/beta pepti 38.4 38 0.0013 18.4 3.1 20 44-63 3-22 (34)
59 2qmx_A Prephenate dehydratase; 37.7 55 0.0019 25.6 5.3 44 89-132 208-252 (283)
60 1t2k_D Cyclic-AMP-dependent tr 36.8 40 0.0014 20.1 3.5 22 41-62 21-42 (61)
61 1e91_A Paired amphipathic heli 34.1 24 0.00082 22.7 2.2 20 34-53 4-23 (85)
62 3mwb_A Prephenate dehydratase; 33.8 84 0.0029 25.0 5.8 43 90-132 211-254 (313)
63 3c3f_A Alpha/beta peptide with 33.8 51 0.0017 17.9 3.1 19 44-62 3-21 (34)
64 2hy6_A General control protein 33.7 33 0.0011 18.7 2.3 19 44-62 3-21 (34)
65 1d66_A Protein (GAL4); protein 33.0 11 0.00039 22.1 0.4 15 41-55 51-65 (66)
66 3m48_A General control protein 32.5 32 0.0011 18.6 2.2 18 45-62 3-20 (33)
67 2f06_A Conserved hypothetical 32.0 1.1E+02 0.0038 20.4 5.6 31 89-119 14-44 (144)
68 1g1e_B SIN3A; four-helix bundl 30.9 31 0.0011 22.4 2.4 19 35-53 8-26 (89)
69 2r2v_A GCN4 leucine zipper; co 30.4 60 0.002 17.7 3.0 19 44-62 3-21 (34)
70 1pd7_B MAD1; PAH2, SIN3, eukar 30.1 56 0.0019 16.7 2.7 19 31-49 2-20 (26)
71 2dtj_A Aspartokinase; protein- 29.9 1.5E+02 0.005 20.9 7.1 29 89-117 24-52 (178)
72 3i00_A HIP-I, huntingtin-inter 29.4 78 0.0027 21.8 4.4 27 34-60 32-58 (120)
73 2akf_A Coronin-1A; coiled coil 28.6 70 0.0024 16.9 3.1 16 45-60 9-24 (32)
74 2czy_A Paired amphipathic heli 27.9 39 0.0013 21.2 2.4 17 37-53 4-20 (77)
75 2qmw_A PDT, prephenate dehydra 27.7 1.2E+02 0.0042 23.4 5.8 42 89-130 197-239 (267)
76 1uo4_A General control protein 26.9 50 0.0017 18.0 2.3 19 44-62 3-21 (34)
77 2bni_A General control protein 26.6 51 0.0018 17.9 2.3 19 44-62 3-21 (34)
78 3muj_A Transcription factor CO 26.3 1.1E+02 0.0038 21.7 4.7 33 15-47 97-133 (138)
79 2pnv_A Small conductance calci 26.1 96 0.0033 17.6 4.6 29 35-63 9-37 (43)
80 2f05_A Paired amphipathic heli 24.7 46 0.0016 22.4 2.4 19 35-53 5-23 (105)
81 2re1_A Aspartokinase, alpha an 24.6 1.1E+02 0.0038 21.2 4.6 27 89-115 34-60 (167)
82 1m45_B IQ2, IQ2 motif from MYO 23.7 48 0.0016 16.6 1.7 9 37-45 2-10 (26)
83 2ket_A Cathelicidin-6; antimic 22.4 39 0.0013 17.1 1.2 18 9-26 5-22 (27)
84 1p3q_Q VPS9P, vacuolar protein 22.2 73 0.0025 19.0 2.7 23 5-27 3-25 (54)
85 2re1_A Aspartokinase, alpha an 22.2 1.1E+02 0.0038 21.2 4.2 34 90-125 115-148 (167)
86 1rwu_A Hypothetical UPF0250 pr 22.0 1.4E+02 0.0047 20.1 4.4 49 81-131 37-88 (109)
87 1m2x_A Class B carbapenemase B 21.1 89 0.0031 22.1 3.6 21 33-53 201-221 (223)
88 2jqq_A Conserved oligomeric go 21.0 50 0.0017 25.0 2.1 45 11-56 53-97 (204)
89 2d0o_B DIOL dehydratase-reacti 20.5 1.7E+02 0.0059 20.2 4.8 28 83-110 10-37 (125)
90 1gmj_A ATPase inhibitor; coile 20.4 1.8E+02 0.0063 18.8 5.9 44 11-62 35-78 (84)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.73 E-value=7.7e-18 Score=113.42 Aligned_cols=62 Identities=29% Similarity=0.461 Sum_probs=58.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCC-CCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPSS-SKLSMPEILDEATSYITHLQKNKESLERRRALLKE 63 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~~-~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~ 63 (137)
.|+.+||+||..||+.|..|+++||.. .|+||++||.+||+||++|+++++.|+.+.+.|..
T Consensus 9 ~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~ 71 (82)
T 1am9_A 9 AHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT 71 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999994 89999999999999999999999999998877654
No 2
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.71 E-value=2.7e-17 Score=110.61 Aligned_cols=62 Identities=34% Similarity=0.512 Sum_probs=57.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC--CCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS--SSKLSMPEILDEATSYITHLQKNKESLERRRALLKE 63 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~--~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~ 63 (137)
.||..||+||..||+.|..|+++||. ..|+||++||..||+||+.|+++++.|+.+++.+..
T Consensus 5 ~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~ 68 (83)
T 1nkp_B 5 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLKR 68 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999998 589999999999999999999999999988876643
No 3
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.71 E-value=2.2e-17 Score=110.52 Aligned_cols=61 Identities=34% Similarity=0.518 Sum_probs=57.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC--CCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS--SSKLSMPEILDEATSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~--~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 62 (137)
.||.+||+||..||+.|..|+++||. ..|+||++||..||+||+.|++.+++|+.+.+.|.
T Consensus 15 ~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 15 HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999998 47999999999999999999999999999988764
No 4
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.68 E-value=1.5e-16 Score=106.81 Aligned_cols=61 Identities=26% Similarity=0.373 Sum_probs=57.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC---CCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS---SSKLSMPEILDEATSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~---~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 62 (137)
.||..||+||..||+.|..|+++||. ..|++|++||..|++||+.|+++.+.|..+++.+.
T Consensus 4 ~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L~ 67 (80)
T 1nlw_A 4 THNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQLQ 67 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999996 47899999999999999999999999999887664
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.66 E-value=2.2e-16 Score=107.70 Aligned_cols=61 Identities=31% Similarity=0.458 Sum_probs=55.6
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC---CCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS---SSKLSMPEILDEATSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~---~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 62 (137)
.||+.||+||..||+.|..|+++||. ..|+||++||..||+||+.|+++.+.+..+++.+.
T Consensus 9 ~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L~ 72 (88)
T 1nkp_A 9 THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLLR 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999998 36999999999999999999999998887665543
No 6
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.60 E-value=1.4e-15 Score=99.95 Aligned_cols=54 Identities=28% Similarity=0.504 Sum_probs=50.2
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC-CCCCCHHhHHHHHHHHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS-SSKLSMPEILDEATSYITHLQKNKESLE 55 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~-~~k~~k~~il~~Ai~YIk~L~~~v~~L~ 55 (137)
+|+.+||+||.+||+.|..|++|||. ..|+||++||..||+||+.|++.+.=|+
T Consensus 11 ~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 11 SRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 69999999999999999999999998 5799999999999999999999886553
No 7
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.59 E-value=5.8e-16 Score=99.60 Aligned_cols=51 Identities=35% Similarity=0.507 Sum_probs=47.1
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCC-------CCCCCHHhHHHHHHHHHHHHHHHH
Q 039443 1 AQRNIKEKHRRTHMKDLISQLASLIPS-------SSKLSMPEILDEATSYITHLQKNK 51 (137)
Q Consensus 1 ~~h~~~ER~RR~~mn~~~~~Lrsl~P~-------~~k~~k~~il~~Ai~YIk~L~~~v 51 (137)
.+|+.+||.||..||+.|..|++|||. .+|.+|+++|+.||+||++|++++
T Consensus 4 ~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 4 ESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp TGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 379999999999999999999999996 368999999999999999999765
No 8
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.58 E-value=5.6e-16 Score=99.72 Aligned_cols=51 Identities=39% Similarity=0.574 Sum_probs=46.7
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhcCCCC------CCCCHHhHHHHHHHHHHHHHHHH
Q 039443 1 AQRNIKEKHRRTHMKDLISQLASLIPSS------SKLSMPEILDEATSYITHLQKNK 51 (137)
Q Consensus 1 ~~h~~~ER~RR~~mn~~~~~Lrsl~P~~------~k~~k~~il~~Ai~YIk~L~~~v 51 (137)
..|+.+||+||..||+.|..|+++||.. .|+||++||..||+||++|+++.
T Consensus 7 ~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 7 AQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 3699999999999999999999999983 38999999999999999999764
No 9
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.55 E-value=9.2e-15 Score=104.49 Aligned_cols=57 Identities=30% Similarity=0.518 Sum_probs=52.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCCC----CCCCHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPSS----SKLSMPEILDEATSYITHLQKNKESLERRR 58 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~~----~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k 58 (137)
.|+.+||+||..||+.|..|+++||.. .|+||++||..||+||+.|++.++.|++..
T Consensus 30 ~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 30 NHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999999972 589999999999999999999999998753
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.54 E-value=2.9e-15 Score=99.62 Aligned_cols=54 Identities=22% Similarity=0.307 Sum_probs=49.3
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC---CCCC-CHHhHHHHHHHHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS---SSKL-SMPEILDEATSYITHLQKNKESLE 55 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~---~~k~-~k~~il~~Ai~YIk~L~~~v~~L~ 55 (137)
.||+.||+||..+|+.|..|+.+||. ..|. +|++||..||+||+.|++++++++
T Consensus 8 ~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 8 HHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999999999994 4565 899999999999999999999875
No 11
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.52 E-value=1.8e-14 Score=91.84 Aligned_cols=51 Identities=27% Similarity=0.396 Sum_probs=47.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC---CCCCCHHhHHHHHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS---SSKLSMPEILDEATSYITHLQKNKE 52 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~---~~k~~k~~il~~Ai~YIk~L~~~v~ 52 (137)
.||+.||+|++.||+.|..||++||. ..|+||.+||..||+||..|++.++
T Consensus 5 ~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 5 KANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999997 4689999999999999999998764
No 12
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.50 E-value=1.6e-14 Score=94.23 Aligned_cols=51 Identities=25% Similarity=0.364 Sum_probs=47.5
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC--CCCCCHHhHHHHHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS--SSKLSMPEILDEATSYITHLQKNKE 52 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~--~~k~~k~~il~~Ai~YIk~L~~~v~ 52 (137)
.||+.||+|++.||+.|..||.+||. ..|+||++||..||+||..|++.++
T Consensus 15 ~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L~ 67 (68)
T 1mdy_A 15 AATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALLR 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 58999999999999999999999997 4799999999999999999998653
No 13
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.47 E-value=1.9e-14 Score=95.07 Aligned_cols=48 Identities=35% Similarity=0.495 Sum_probs=45.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC----CCCCCHHhHHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS----SSKLSMPEILDEATSYITHLQK 49 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~----~~k~~k~~il~~Ai~YIk~L~~ 49 (137)
.|+.+||+||.+||+.|..|++|||. .+|+||++||..||+||+.|+.
T Consensus 12 ~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 12 AHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred hcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 59999999999999999999999997 3799999999999999999874
No 14
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.24 E-value=2.3e-12 Score=83.71 Aligned_cols=46 Identities=30% Similarity=0.383 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHHHHHHHHhcCCC---CCCCCHHhHHHHHHHHHHHHHH
Q 039443 4 NIKEKHRRTHMKDLISQLASLIPS---SSKLSMPEILDEATSYITHLQK 49 (137)
Q Consensus 4 ~~~ER~RR~~mn~~~~~Lrsl~P~---~~k~~k~~il~~Ai~YIk~L~~ 49 (137)
+..||+|+..||+.|..||.+||. ..|+||.+||..||+||..||+
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 467999999999999999999998 4789999999999999999984
No 15
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.05 E-value=2e-10 Score=93.83 Aligned_cols=49 Identities=27% Similarity=0.548 Sum_probs=42.7
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC-CCCCCHHhHHHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS-SSKLSMPEILDEATSYITHLQKN 50 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~-~~k~~k~~il~~Ai~YIk~L~~~ 50 (137)
.|+.+||+||.+||..|..|++|||. .+|+||++||..||.||+.++..
T Consensus 15 ~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 15 SRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 69999999999999999999999995 78999999999999999999764
No 16
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.93 E-value=1.9e-09 Score=74.48 Aligned_cols=48 Identities=35% Similarity=0.422 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC---CCCCCHHhHHHHHHHHHHHHHHHHHH
Q 039443 6 KEKHRRTHMKDLISQLASLIPS---SSKLSMPEILDEATSYITHLQKNKES 53 (137)
Q Consensus 6 ~ER~RR~~mn~~~~~Lrsl~P~---~~k~~k~~il~~Ai~YIk~L~~~v~~ 53 (137)
.||.|...||+.|..||.+||. ..|++|.++|.-||+||..|++-+++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 3689999999999999999997 46899999999999999999998765
No 17
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.88 E-value=1.5e-09 Score=89.71 Aligned_cols=49 Identities=35% Similarity=0.482 Sum_probs=45.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHhcCCC----CCCCCHHhHHHHHHHHHHHHHHH
Q 039443 2 QRNIKEKHRRTHMKDLISQLASLIPS----SSKLSMPEILDEATSYITHLQKN 50 (137)
Q Consensus 2 ~h~~~ER~RR~~mn~~~~~Lrsl~P~----~~k~~k~~il~~Ai~YIk~L~~~ 50 (137)
+|+.+||+||.+||+.|..|++|||. ..|+||++||..||.|||.|+..
T Consensus 16 ~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~~ 68 (387)
T 4f3l_B 16 AHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRGA 68 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHCC
T ss_pred cccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhcc
Confidence 59999999999999999999999994 78999999999999999999743
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.36 E-value=1.4e-06 Score=58.47 Aligned_cols=47 Identities=28% Similarity=0.490 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCC----CCCCCHHhHHHHHHHHHHHHHHHHHHHHHH
Q 039443 11 RTHMKDLISQLASLIPS----SSKLSMPEILDEATSYITHLQKNKESLERR 57 (137)
Q Consensus 11 R~~mn~~~~~Lrsl~P~----~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~ 57 (137)
|-.+|+.+..|..|||. ..|++|.+||..|++||+.|++..+.+.+.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66799999999999996 368999999999999999998877776653
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=95.24 E-value=0.18 Score=32.27 Aligned_cols=45 Identities=7% Similarity=0.076 Sum_probs=38.9
Q ss_pred ecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEecC
Q 039443 87 CGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKVHF 131 (137)
Q Consensus 87 ~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv~~ 131 (137)
.+.+++|.+.+|...|-+.|..+.+.+....++..+..+.+.+.+
T Consensus 11 ~~~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~ 55 (91)
T 1zpv_A 11 VGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE 55 (91)
T ss_dssp EESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS
T ss_pred EECCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC
Confidence 445899999999999999999999999988888777778777765
No 20
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.15 E-value=0.25 Score=36.57 Aligned_cols=46 Identities=22% Similarity=0.229 Sum_probs=39.3
Q ss_pred EEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEec
Q 039443 85 LICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKVH 130 (137)
Q Consensus 85 ~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv~ 130 (137)
.++|..++|.+..|...|.++|+.|++++..+.++.++..+.+...
T Consensus 9 tv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 9 SVAGSDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 3445589999999999999999999999999998888777777654
No 21
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=94.03 E-value=0.27 Score=35.96 Aligned_cols=47 Identities=13% Similarity=0.278 Sum_probs=39.5
Q ss_pred eEEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEe
Q 039443 82 EVNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKV 129 (137)
Q Consensus 82 ~V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv 129 (137)
.+.++ |.+++|.+.+|...|.++|+.+++++....++.++.++.+..
T Consensus 8 ~itv~-~~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~ 54 (192)
T 1u8s_A 8 VITAV-GTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG 54 (192)
T ss_dssp EEEEE-EECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEE-cCCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec
Confidence 34444 458999999999999999999999999998888887777654
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=92.59 E-value=0.93 Score=28.26 Aligned_cols=44 Identities=14% Similarity=0.153 Sum_probs=35.4
Q ss_pred cCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEecC
Q 039443 88 GSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKVHF 131 (137)
Q Consensus 88 ~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv~~ 131 (137)
..+++|.|.+|...|.+.|+.+.+.+....++.....+...+.+
T Consensus 12 ~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~ 55 (88)
T 2ko1_A 12 GEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKN 55 (88)
T ss_dssp EECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESS
T ss_pred EECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECC
Confidence 44789999999999999999999999988766444566666543
No 23
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=86.32 E-value=2.5 Score=31.09 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=36.2
Q ss_pred EEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeC------CeEEEEEEEEec
Q 039443 83 VNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSG------DRVIFSVLSKVH 130 (137)
Q Consensus 83 V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~------~~v~~ti~akv~ 130 (137)
+.+. |..++|.+.+|-..|-++|+.+.+++..+.+ +.++..+...+.
T Consensus 96 ltv~-g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~ 148 (195)
T 2nyi_A 96 LYVE-GPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFP 148 (195)
T ss_dssp EEEE-EECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEE
T ss_pred EEEE-eCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcC
Confidence 3444 4579999999999999999999999999876 445445555443
No 24
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=79.60 E-value=2.9 Score=23.85 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039443 36 ILDEATSYITHLQKNKESLERRRALL 61 (137)
Q Consensus 36 il~~Ai~YIk~L~~~v~~L~~~k~~l 61 (137)
.+.+--+||++|+++-.+|..-++.+
T Consensus 4 tvkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 4 TVKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 46677899999999999998766654
No 25
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=79.06 E-value=7.4 Score=28.06 Aligned_cols=35 Identities=0% Similarity=0.008 Sum_probs=29.6
Q ss_pred EEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeC
Q 039443 84 NLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSG 118 (137)
Q Consensus 84 ~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~ 118 (137)
..+.+..++|.+.+|...|.++|++|.++...+.+
T Consensus 96 l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~ 130 (192)
T 1u8s_A 96 VYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTIS 130 (192)
T ss_dssp EEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred EEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhccc
Confidence 33345679999999999999999999999988764
No 26
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=78.60 E-value=6.2 Score=27.20 Aligned_cols=30 Identities=10% Similarity=0.047 Sum_probs=27.4
Q ss_pred cCCCcchHHHHHHHHHhCCcEEEEEEEeee
Q 039443 88 GSNRNFMFHEIISVLEEGAAEVINVTQFNS 117 (137)
Q Consensus 88 ~~~~~~~L~~il~~Le~~~L~V~~a~~s~~ 117 (137)
+.++.|+|.+|+.+|.+.++++.++++.+.
T Consensus 7 ~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 7 CEDRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp ECSCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EecCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 447999999999999999999999999775
No 27
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=78.10 E-value=8.5 Score=30.89 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=40.2
Q ss_pred EEEecCCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEEEEecC
Q 039443 84 NLICGSNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVLSKVHF 131 (137)
Q Consensus 84 ~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~akv~~ 131 (137)
..+.|..++|....|-..|-++|..+++++-...++.++-.+.+.+.+
T Consensus 15 lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~ 62 (415)
T 3p96_A 15 ITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPA 62 (415)
T ss_dssp EEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECH
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecC
Confidence 334455899999999999999999999999999999888777776643
No 28
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=74.84 E-value=8.3 Score=21.60 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=27.1
Q ss_pred CCHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039443 31 LSMPEILDEATSYITHLQKNKESLERRRALL 61 (137)
Q Consensus 31 ~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l 61 (137)
|.....|+++-.-|..|+.+++.|+.+|.+|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567789999999999999999999998765
No 29
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=69.88 E-value=5.5 Score=22.91 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 039443 42 SYITHLQKNKESLERRRALLKE 63 (137)
Q Consensus 42 ~YIk~L~~~v~~L~~~k~~l~~ 63 (137)
.|+-+|+.++++|+.+-.+|..
T Consensus 3 aYl~eLE~r~k~le~~naeLEe 24 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEE 24 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4888888888888877666543
No 30
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=69.35 E-value=5.2 Score=24.12 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 039443 41 TSYITHLQKNKESLERRRALLKE 63 (137)
Q Consensus 41 i~YIk~L~~~v~~L~~~k~~l~~ 63 (137)
-.||..|+++++.|+.....+..
T Consensus 43 ~~~~~~L~~ri~~Le~~l~~l~~ 65 (70)
T 1zme_C 43 TKYLQQLQKDLNDKTEENNRLKA 65 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999988776654
No 31
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=65.64 E-value=4.6 Score=24.60 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 039443 41 TSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 41 i~YIk~L~~~v~~L~~~k~~l~ 62 (137)
-.||..|+++|+.|+.....+.
T Consensus 48 ~~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 48 RARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3899999999999999877653
No 32
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=60.53 E-value=13 Score=18.78 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=16.1
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 039443 34 PEILDEATSYITHLQKNKES 53 (137)
Q Consensus 34 ~~il~~Ai~YIk~L~~~v~~ 53 (137)
.+.+-+|-+|+.+|..+++.
T Consensus 3 vsgliearkyleqlhrklkn 22 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLKN 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhc
Confidence 46778999999999887753
No 33
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=60.51 E-value=9 Score=24.23 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 039443 41 TSYITHLQKNKESLERRRALL 61 (137)
Q Consensus 41 i~YIk~L~~~v~~L~~~k~~l 61 (137)
-.||++|+.+|.+|+.....+
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l 48 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSST 48 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999998765543
No 34
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=58.42 E-value=16 Score=26.54 Aligned_cols=40 Identities=8% Similarity=0.121 Sum_probs=32.5
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeC--CeEEEEEEEE
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSG--DRVIFSVLSK 128 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~--~~v~~ti~ak 128 (137)
.+++|.|.+|...|.+.|+.+.+.++.... +..-.+|.+.
T Consensus 11 ~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~ 52 (164)
T 2f1f_A 11 ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV 52 (164)
T ss_dssp ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE
T ss_pred eCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe
Confidence 378999999999999999999999997654 4455666665
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=57.27 E-value=25 Score=27.06 Aligned_cols=43 Identities=7% Similarity=0.189 Sum_probs=29.5
Q ss_pred cCCCcchHHHHHHHHHhCCcEEEEEEEeeeC----C-eEEEEEEEEecCC
Q 039443 88 GSNRNFMFHEIISVLEEGAAEVINVTQFNSG----D-RVIFSVLSKVHFR 132 (137)
Q Consensus 88 ~~~~~~~L~~il~~Le~~~L~V~~a~~s~~~----~-~v~~ti~akv~~~ 132 (137)
..+++|.|.+|+..|-+.+..+.+.+.+... + ....+ .++.+.
T Consensus 11 a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~--IEV~d~ 58 (223)
T 1y7p_A 11 AENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIY--FEIEGG 58 (223)
T ss_dssp EECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEE--EEECSS
T ss_pred EcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEE--EEECCC
Confidence 3478999999999999999999999998864 3 33333 666654
No 36
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=57.10 E-value=42 Score=22.66 Aligned_cols=38 Identities=8% Similarity=0.079 Sum_probs=27.9
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEEE
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSVL 126 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti~ 126 (137)
..+||.+.+++.+|.+.|+.+.+..++..++.....|.
T Consensus 80 ~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~ 117 (144)
T 2f06_A 80 PNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIR 117 (144)
T ss_dssp ESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEE
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEE
Confidence 47899999999999999999976554423555444443
No 37
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=56.73 E-value=37 Score=26.61 Aligned_cols=44 Identities=14% Similarity=0.015 Sum_probs=34.4
Q ss_pred EecCCCcchHHHHHHHHHhCCcEEEEEEEee--eCCeEEEEEEEEe
Q 039443 86 ICGSNRNFMFHEIISVLEEGAAEVINVTQFN--SGDRVIFSVLSKV 129 (137)
Q Consensus 86 ~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~--~~~~v~~ti~akv 129 (137)
+.|.+++|....|-..|-++|+.+++++... .++.+|-.+.+..
T Consensus 13 v~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~ 58 (286)
T 3n0v_A 13 ADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQ 58 (286)
T ss_dssp EEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred EEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEec
Confidence 3455899999999999999999999999884 3566665555544
No 38
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=56.06 E-value=31 Score=20.84 Aligned_cols=43 Identities=19% Similarity=0.294 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039443 7 EKHRRTHMKDLISQLASLIPSSSKLSMPEILDEATSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 7 ER~RR~~mn~~~~~Lrsl~P~~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 62 (137)
||.++....+..++-++= .---.|+.+|+.++..|+.+...|.
T Consensus 1 Ekr~rrrerNR~AA~rcR-------------~rKk~~~~~Le~~v~~L~~~n~~L~ 43 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR-------------NRRRELTDTLQAETDQLEDEKSALQ 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666661 2234677777777777777655443
No 39
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=53.85 E-value=18 Score=26.27 Aligned_cols=39 Identities=3% Similarity=0.080 Sum_probs=32.1
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeC--CeEEEEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSG--DRVIFSVLSK 128 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~--~~v~~ti~ak 128 (137)
+++|.|.+|...|.+.|+.+.+.++.... +..-.+|.+.
T Consensus 13 NrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~ 53 (165)
T 2pc6_A 13 NEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN 53 (165)
T ss_dssp CSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred CCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe
Confidence 78999999999999999999999987653 4555666665
No 40
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=53.47 E-value=46 Score=26.13 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=34.7
Q ss_pred EecCCCcchHHHHHHHHHhCCcEEEEEEEee--eCCeEEEEEEEEec
Q 039443 86 ICGSNRNFMFHEIISVLEEGAAEVINVTQFN--SGDRVIFSVLSKVH 130 (137)
Q Consensus 86 ~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~--~~~~v~~ti~akv~ 130 (137)
+.|..++|...+|-..|-++|+.+++++... .++.+|-.+.+...
T Consensus 15 v~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~ 61 (292)
T 3lou_A 15 LSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHAT 61 (292)
T ss_dssp EEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred EEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEcc
Confidence 3455899999999999999999999999884 35666655554443
No 41
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=52.73 E-value=16 Score=21.70 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 039443 42 SYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 42 ~YIk~L~~~v~~L~~~k~~l~ 62 (137)
.|+.+|+.+|..|+.+-..|.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~ 42 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLI 42 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999998766554
No 42
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=52.19 E-value=52 Score=25.72 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=36.0
Q ss_pred EecCCCcchHHHHHHHHHhCCcEEEEEEEee--eCCeEEEEEEEEecC
Q 039443 86 ICGSNRNFMFHEIISVLEEGAAEVINVTQFN--SGDRVIFSVLSKVHF 131 (137)
Q Consensus 86 ~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~--~~~~v~~ti~akv~~ 131 (137)
+.|..++|....|-..|-++|+.+++++... .++.+|-.+.+.+.+
T Consensus 11 v~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~~ 58 (288)
T 3obi_A 11 LSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNAAA 58 (288)
T ss_dssp EEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEESS
T ss_pred EECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEcCC
Confidence 3455899999999999999999999998863 366666666666544
No 43
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=50.82 E-value=18 Score=19.96 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 039443 44 ITHLQKNKESLERRRALLK 62 (137)
Q Consensus 44 Ik~L~~~v~~L~~~k~~l~ 62 (137)
+++|+.+|++|-.++..|.
T Consensus 3 MnQLE~KVEeLl~~~~~Le 21 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLK 21 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 5678888888777766554
No 44
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=49.36 E-value=21 Score=19.38 Aligned_cols=19 Identities=11% Similarity=0.046 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 039443 44 ITHLQKNKESLERRRALLK 62 (137)
Q Consensus 44 Ik~L~~~v~~L~~~k~~l~ 62 (137)
+++|+.+|++|-.++..+.
T Consensus 2 MnQLEdKVEell~~~~~le 20 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNT 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHH
Confidence 4678888888777766554
No 45
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=49.34 E-value=43 Score=25.05 Aligned_cols=39 Identities=10% Similarity=0.148 Sum_probs=32.1
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeee--CCeEEEEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNS--GDRVIFSVLSK 128 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~--~~~v~~ti~ak 128 (137)
+++|.|.+|...|...|+.+.+.++... .+..-+||.+.
T Consensus 38 N~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~ 78 (193)
T 2fgc_A 38 NKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK 78 (193)
T ss_dssp CCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred CCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEE
Confidence 7899999999999999999999998754 34455677765
No 46
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=49.10 E-value=84 Score=24.78 Aligned_cols=47 Identities=6% Similarity=0.061 Sum_probs=36.0
Q ss_pred EEEEecCCCcchHHHHHHHHHhCCcEEEEEEEeee--CCeEEEEEEEEe
Q 039443 83 VNLICGSNRNFMFHEIISVLEEGAAEVINVTQFNS--GDRVIFSVLSKV 129 (137)
Q Consensus 83 V~~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~~--~~~v~~ti~akv 129 (137)
|..+.|..++|....|-..|-++|..+++++.... ++.+|-.+.+.+
T Consensus 24 iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~ 72 (302)
T 3o1l_A 24 RLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRA 72 (302)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEec
Confidence 33444558999999999999999999999998865 566555555544
No 47
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=47.76 E-value=17 Score=23.10 Aligned_cols=23 Identities=17% Similarity=0.134 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 039443 41 TSYITHLQKNKESLERRRALLKE 63 (137)
Q Consensus 41 i~YIk~L~~~v~~L~~~k~~l~~ 63 (137)
-.|+..|+++++.|+.....+..
T Consensus 47 ~~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 47 RSYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 35999999999999998876543
No 48
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=45.31 E-value=73 Score=24.87 Aligned_cols=45 Identities=16% Similarity=0.304 Sum_probs=33.6
Q ss_pred EEecCCCcchHHHHHHHHHhCCcEEEEEEEee--eCCeEEEEEEEEe
Q 039443 85 LICGSNRNFMFHEIISVLEEGAAEVINVTQFN--SGDRVIFSVLSKV 129 (137)
Q Consensus 85 ~~~~~~~~~~L~~il~~Le~~~L~V~~a~~s~--~~~~v~~ti~akv 129 (137)
.+.|..++|....|-..|-++|..+++++... .++.+|-.+.+..
T Consensus 11 tv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~ 57 (287)
T 3nrb_A 11 SLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEI 57 (287)
T ss_dssp EEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEc
Confidence 34455899999999999999999999998863 3555554444433
No 49
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=44.41 E-value=58 Score=20.55 Aligned_cols=29 Identities=17% Similarity=0.091 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCHHhHHHH
Q 039443 11 RTHMKDLISQLASLIPSSSKLSMPEILDE 39 (137)
Q Consensus 11 R~~mn~~~~~Lrsl~P~~~k~~k~~il~~ 39 (137)
|+...+....|+..-|+....+.++.+..
T Consensus 9 rrl~~~F~~mLk~~~p~I~~~s~We~vr~ 37 (77)
T 2cqn_A 9 KRKESAFKSMLKQAAPPIELDAVWEDIRE 37 (77)
T ss_dssp HHHHHHHHHHHHTCSSCCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 33456777888888777665555554433
No 50
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=44.37 E-value=26 Score=21.09 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 039443 41 TSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 41 i~YIk~L~~~v~~L~~~k~~l~ 62 (137)
-.|+.+|+.++..|+.+...|.
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~ 42 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELA 42 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888887766554
No 51
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=44.12 E-value=8.1 Score=23.89 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 039443 41 TSYITHLQKNKESLERRRALL 61 (137)
Q Consensus 41 i~YIk~L~~~v~~L~~~k~~l 61 (137)
-.||..|+++|+.||.....+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999766544
No 52
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=43.33 E-value=89 Score=25.02 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=37.9
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEE-EEEEEEecCCC
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVI-FSVLSKVHFRP 133 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~-~ti~akv~~~~ 133 (137)
+++|.|.++|..|...|+......+-+..+... |.|.+.+.+..
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~~ 261 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDAAP 261 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESSCT
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeCCc
Confidence 579999999999999999999999988877665 88888887653
No 53
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=43.33 E-value=18 Score=19.96 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 039443 44 ITHLQKNKESLERRRALLK 62 (137)
Q Consensus 44 Ik~L~~~v~~L~~~k~~l~ 62 (137)
+++|+.+|++|-.++..|.
T Consensus 3 MnQLE~kVEeLl~~~~~Le 21 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLE 21 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 4677777777777665554
No 54
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=42.98 E-value=39 Score=21.93 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 039443 36 ILDEATSYITHLQKNKESLERRRALL 61 (137)
Q Consensus 36 il~~Ai~YIk~L~~~v~~L~~~k~~l 61 (137)
-|..|++-|.-|+-.+++|+.+...+
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999998877654
No 55
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=42.19 E-value=25 Score=21.81 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 039443 41 TSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 41 i~YIk~L~~~v~~L~~~k~~l~ 62 (137)
-.|+..|+++++.|+.....+.
T Consensus 44 ~~~~~~L~~r~~~le~~l~~l~ 65 (89)
T 3coq_A 44 RAHLTEVESRLERLEQLFLLIF 65 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4699999999999998877654
No 56
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=41.84 E-value=32 Score=18.63 Aligned_cols=19 Identities=0% Similarity=0.128 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 039443 44 ITHLQKNKESLERRRALLK 62 (137)
Q Consensus 44 Ik~L~~~v~~L~~~k~~l~ 62 (137)
+++|+.+|++|=.++..|.
T Consensus 2 MnQLEdKvEeLl~~~~~Le 20 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXE 20 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHH
Confidence 4678888888877776654
No 57
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=40.20 E-value=32 Score=20.94 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 039443 41 TSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 41 i~YIk~L~~~v~~L~~~k~~l~ 62 (137)
-.|+.+|+.++..|+.+...|.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~ 50 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLE 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888888888887766554
No 58
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=38.44 E-value=38 Score=18.42 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 039443 44 ITHLQKNKESLERRRALLKE 63 (137)
Q Consensus 44 Ik~L~~~v~~L~~~k~~l~~ 63 (137)
+.+|+.+|++|-.++..|..
T Consensus 3 MnQLE~kVEeLl~~n~~Le~ 22 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEX 22 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHH
Confidence 46788888888777766543
No 59
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=37.72 E-value=55 Score=25.63 Aligned_cols=44 Identities=5% Similarity=0.045 Sum_probs=35.7
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeE-EEEEEEEecCC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSGDRV-IFSVLSKVHFR 132 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v-~~ti~akv~~~ 132 (137)
.+++|.|.++|..|...|+......+=+..+.. -|.|.+.+.+.
T Consensus 208 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~eg~ 252 (283)
T 2qmx_A 208 PNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFIGH 252 (283)
T ss_dssp ECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEESC
T ss_pred CCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEecC
Confidence 378999999999999999999999998875543 36777776654
No 60
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.84 E-value=40 Score=20.09 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 039443 41 TSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 41 i~YIk~L~~~v~~L~~~k~~l~ 62 (137)
-.|+.+|+.+++.|+.+...|.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~ 42 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQ 42 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777777777655543
No 61
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=34.05 E-value=24 Score=22.74 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=16.8
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 039443 34 PEILDEATSYITHLQKNKES 53 (137)
Q Consensus 34 ~~il~~Ai~YIk~L~~~v~~ 53 (137)
+..+++|++|++.++.+.+.
T Consensus 4 ~~~~~~A~~yv~kVK~rF~~ 23 (85)
T 1e91_A 4 SVEFNNAISYVNKIKTRFLD 23 (85)
T ss_dssp CHHHHHHHHHHHHHHHHTSS
T ss_pred CccHHHHHHHHHHHHHHHhc
Confidence 45689999999999988765
No 62
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=33.82 E-value=84 Score=25.00 Aligned_cols=43 Identities=7% Similarity=0.061 Sum_probs=33.8
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEE-EEEEEEecCC
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVI-FSVLSKVHFR 132 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~-~ti~akv~~~ 132 (137)
+++|.|.++|..|...|+......+-+..+... |.|.+.+.+.
T Consensus 211 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg~ 254 (313)
T 3mwb_A 211 DHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDADGH 254 (313)
T ss_dssp CCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEEESC
T ss_pred CCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEEeCC
Confidence 689999999999999999999998877755433 6666666543
No 63
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=33.76 E-value=51 Score=17.91 Aligned_cols=19 Identities=5% Similarity=0.017 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 039443 44 ITHLQKNKESLERRRALLK 62 (137)
Q Consensus 44 Ik~L~~~v~~L~~~k~~l~ 62 (137)
+.+|+.+|++|=.++..|.
T Consensus 3 MnQLEdKVEeLl~~~~~Le 21 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXE 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHH
Confidence 4677777777777666554
No 64
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=33.68 E-value=33 Score=18.70 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 039443 44 ITHLQKNKESLERRRALLK 62 (137)
Q Consensus 44 Ik~L~~~v~~L~~~k~~l~ 62 (137)
+++|+.+|++|-.++..|.
T Consensus 3 MnQLEdkVEeLl~~~~~Le 21 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLA 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 4677888888777666554
No 65
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=33.02 E-value=11 Score=22.12 Aligned_cols=15 Identities=27% Similarity=0.383 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHH
Q 039443 41 TSYITHLQKNKESLE 55 (137)
Q Consensus 41 i~YIk~L~~~v~~L~ 55 (137)
..|+..|+++|+.||
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 569999999998876
No 66
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=32.52 E-value=32 Score=18.64 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 039443 45 THLQKNKESLERRRALLK 62 (137)
Q Consensus 45 k~L~~~v~~L~~~k~~l~ 62 (137)
.+|+++|++|-.++..|.
T Consensus 3 ~QLE~kVEeLl~~n~~Le 20 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLE 20 (33)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHHH
Confidence 467777777777666554
No 67
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=31.98 E-value=1.1e+02 Score=20.44 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=25.3
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeCC
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSGD 119 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~ 119 (137)
.+++|.+.++...|.+.|+.|.+.......+
T Consensus 14 ~d~~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 14 ENKSGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp CSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred cCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 3679999999999999999998877654433
No 68
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=30.85 E-value=31 Score=22.39 Aligned_cols=19 Identities=11% Similarity=0.333 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 039443 35 EILDEATSYITHLQKNKES 53 (137)
Q Consensus 35 ~il~~Ai~YIk~L~~~v~~ 53 (137)
-..++|++|++.++.+.+.
T Consensus 8 ~~~~~A~~YvnkVK~rF~~ 26 (89)
T 1g1e_B 8 VEFNHAINYVNKIKNRFQG 26 (89)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHHHcc
Confidence 3589999999999998643
No 69
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=30.40 E-value=60 Score=17.65 Aligned_cols=19 Identities=5% Similarity=0.060 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 039443 44 ITHLQKNKESLERRRALLK 62 (137)
Q Consensus 44 Ik~L~~~v~~L~~~k~~l~ 62 (137)
+++|+.+|++|-.++..+.
T Consensus 3 MnQledKvEel~~~~~~l~ 21 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNA 21 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHH
Confidence 4677777777777665543
No 70
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=30.15 E-value=56 Score=16.71 Aligned_cols=19 Identities=21% Similarity=0.286 Sum_probs=14.4
Q ss_pred CCHHhHHHHHHHHHHHHHH
Q 039443 31 LSMPEILDEATSYITHLQK 49 (137)
Q Consensus 31 ~~k~~il~~Ai~YIk~L~~ 49 (137)
+....+|-+|.+|+...+.
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4556788899999986654
No 71
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=29.88 E-value=1.5e+02 Score=20.92 Aligned_cols=29 Identities=17% Similarity=0.085 Sum_probs=22.1
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeee
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNS 117 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~ 117 (137)
.+++|.+.+|+..|.+.|+.|.....+..
T Consensus 24 ~~~~G~~a~if~~La~~~InId~i~~s~~ 52 (178)
T 2dtj_A 24 SDKPGEAAKVFRALADAEINIDMVLQNVS 52 (178)
T ss_dssp ECSTTHHHHHHHHHHHTTCCCCEEEECCC
T ss_pred CCCccHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 46789999999999999966655544433
No 72
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=29.44 E-value=78 Score=21.79 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=22.3
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 039443 34 PEILDEATSYITHLQKNKESLERRRAL 60 (137)
Q Consensus 34 ~~il~~Ai~YIk~L~~~v~~L~~~k~~ 60 (137)
-.+..+|-.||-+|+.+|..|+.+.+.
T Consensus 32 e~l~~E~q~~v~ql~~~i~~Le~eL~e 58 (120)
T 3i00_A 32 ENMKTESQRVVLQLKGHVSELEADLAE 58 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999976543
No 73
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=28.61 E-value=70 Score=16.86 Aligned_cols=16 Identities=19% Similarity=0.183 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 039443 45 THLQKNKESLERRRAL 60 (137)
Q Consensus 45 k~L~~~v~~L~~~k~~ 60 (137)
+.|+.-+++|+++.+.
T Consensus 9 r~l~~ivq~lq~r~dr 24 (32)
T 2akf_A 9 RNLNAIVQKLQERLDR 24 (32)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 74
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=27.88 E-value=39 Score=21.23 Aligned_cols=17 Identities=18% Similarity=0.417 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 039443 37 LDEATSYITHLQKNKES 53 (137)
Q Consensus 37 l~~Ai~YIk~L~~~v~~ 53 (137)
+++|++|++.++++.+.
T Consensus 4 ~~dA~~yl~~VK~~F~~ 20 (77)
T 2czy_A 4 VEDALTYLDQVKIRFGS 20 (77)
T ss_dssp HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHcc
Confidence 68999999999998764
No 75
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=27.66 E-value=1.2e+02 Score=23.39 Aligned_cols=42 Identities=0% Similarity=0.022 Sum_probs=33.1
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEE-EEEEEEec
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQFNSGDRVI-FSVLSKVH 130 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~-~ti~akv~ 130 (137)
.+++|.|.++|..|...|+......+=+..+... |.|.+.+.
T Consensus 197 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~e 239 (267)
T 2qmw_A 197 HDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQAD 239 (267)
T ss_dssp SCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEES
T ss_pred CCCcChHHHHHHHHHHcCCCeeEEEEeecCCCCccEEEEEEEe
Confidence 5789999999999999999999999887755432 55555554
No 76
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=26.90 E-value=50 Score=17.96 Aligned_cols=19 Identities=5% Similarity=0.221 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 039443 44 ITHLQKNKESLERRRALLK 62 (137)
Q Consensus 44 Ik~L~~~v~~L~~~k~~l~ 62 (137)
+++|+.+|++|=.++..+.
T Consensus 3 M~QLEdKVEeLl~~n~~Le 21 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIE 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHH
Confidence 4677888887777665554
No 77
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=26.60 E-value=51 Score=17.92 Aligned_cols=19 Identities=5% Similarity=0.179 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 039443 44 ITHLQKNKESLERRRALLK 62 (137)
Q Consensus 44 Ik~L~~~v~~L~~~k~~l~ 62 (137)
+++|+.+|++|=.++..+.
T Consensus 3 MnQLEdKvEeLl~~~~~L~ 21 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHIC 21 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHHH
Confidence 4678888888877766554
No 78
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=26.33 E-value=1.1e+02 Score=21.71 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCC----CCCCCHHhHHHHHHHHHHHH
Q 039443 15 KDLISQLASLIPS----SSKLSMPEILDEATSYITHL 47 (137)
Q Consensus 15 n~~~~~Lrsl~P~----~~k~~k~~il~~Ai~YIk~L 47 (137)
.-.|..|..++|. ..++.|--||..|.++...|
T Consensus 97 d~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 97 DYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp HHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred ccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 4469999999997 57899999999999988766
No 79
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=26.09 E-value=96 Score=17.59 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 039443 35 EILDEATSYITHLQKNKESLERRRALLKE 63 (137)
Q Consensus 35 ~il~~Ai~YIk~L~~~v~~L~~~k~~l~~ 63 (137)
+++.+--.--..|++++..|+.|.+.+..
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 45555556667777788888877766543
No 80
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=24.75 E-value=46 Score=22.38 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 039443 35 EILDEATSYITHLQKNKES 53 (137)
Q Consensus 35 ~il~~Ai~YIk~L~~~v~~ 53 (137)
-.+++|++|++.++.+.+.
T Consensus 5 ~~~~dA~~YvnkVK~rF~d 23 (105)
T 2f05_A 5 VEFNNAISYVNKIKTRFLD 23 (105)
T ss_dssp HHHHHHHHHHHHHHHHTTT
T ss_pred CcHHHHHHHHHHHHHHHcc
Confidence 4578999999999988655
No 81
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=24.60 E-value=1.1e+02 Score=21.24 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=22.6
Q ss_pred CCCcchHHHHHHHHHhCCcEEEEEEEe
Q 039443 89 SNRNFMFHEIISVLEEGAAEVINVTQF 115 (137)
Q Consensus 89 ~~~~~~L~~il~~Le~~~L~V~~a~~s 115 (137)
.+++|.+.+|+..|.++|+.|...+.+
T Consensus 34 ~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 34 PDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp ECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred CCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 367899999999999999998776554
No 82
>1m45_B IQ2, IQ2 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae}
Probab=23.67 E-value=48 Score=16.58 Aligned_cols=9 Identities=22% Similarity=0.648 Sum_probs=6.0
Q ss_pred HHHHHHHHH
Q 039443 37 LDEATSYIT 45 (137)
Q Consensus 37 l~~Ai~YIk 45 (137)
+..||+|++
T Consensus 2 isqaikylq 10 (26)
T 1m45_B 2 ISQAIKYLQ 10 (26)
T ss_dssp HHHHHHHHH
T ss_pred HhHHHHHHH
Confidence 567777754
No 83
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=22.37 E-value=39 Score=17.08 Aligned_cols=18 Identities=33% Similarity=0.623 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 039443 9 HRRTHMKDLISQLASLIP 26 (137)
Q Consensus 9 ~RR~~mn~~~~~Lrsl~P 26 (137)
+=|++.+.+|..|.-++|
T Consensus 5 rfrkkfkklfkklspvip 22 (27)
T 2ket_A 5 RFRKKFKKLFKKLSPVIP 22 (27)
T ss_dssp HHHHHHHHHHHHHSCSCH
T ss_pred HHHHHHHHHHHhcCcccc
Confidence 347788999999887776
No 84
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=22.23 E-value=73 Score=19.00 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Q 039443 5 IKEKHRRTHMKDLISQLASLIPS 27 (137)
Q Consensus 5 ~~ER~RR~~mn~~~~~Lrsl~P~ 27 (137)
.++|-+|...++-+..|.++.|.
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~ 25 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPD 25 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 56888999999999999999998
No 85
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=22.16 E-value=1.1e+02 Score=21.25 Aligned_cols=34 Identities=15% Similarity=0.131 Sum_probs=25.3
Q ss_pred CCcchHHHHHHHHHhCCcEEEEEEEeeeCCeEEEEE
Q 039443 90 NRNFMFHEIISVLEEGAAEVINVTQFNSGDRVIFSV 125 (137)
Q Consensus 90 ~~~~~L~~il~~Le~~~L~V~~a~~s~~~~~v~~ti 125 (137)
..+|.+.+++.+|.+.|+.|...+ +....+.+.+
T Consensus 115 ~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv 148 (167)
T 2re1_A 115 SHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLI 148 (167)
T ss_dssp TCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEE
T ss_pred CCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEE
Confidence 468999999999999999998754 3344444443
No 86
>1rwu_A Hypothetical UPF0250 protein YBED; mixed alpha-beta fold, structural genomics, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.58.54.1
Probab=22.03 E-value=1.4e+02 Score=20.08 Aligned_cols=49 Identities=10% Similarity=0.181 Sum_probs=35.0
Q ss_pred eeEEEEecCCCcchHHHHHHHHHhC---CcEEEEEEEeeeCCeEEEEEEEEecC
Q 039443 81 LEVNLICGSNRNFMFHEIISVLEEG---AAEVINVTQFNSGDRVIFSVLSKVHF 131 (137)
Q Consensus 81 ~~V~~~~~~~~~~~L~~il~~Le~~---~L~V~~a~~s~~~~~v~~ti~akv~~ 131 (137)
..+.++ +...+.....|.++++.+ +.++ ..+-|.-|..+-+|+.+.|.+
T Consensus 37 y~~KvI-G~a~~~~~~~V~~vv~~~~p~d~~~-~~r~Ss~GkY~Svtv~v~v~S 88 (109)
T 1rwu_A 37 FTYKVM-GQALPELVDQVVEVVQRHAPGDYTP-TVKPSSKGNYHSVSITINATH 88 (109)
T ss_dssp EEEEEE-EECCTTHHHHHHHHHHHHSSSCCCE-EEEESSCSSEEEEEEEECCSS
T ss_pred ceEEEE-EECcHHHHHHHHHHHHHhCCCCCCc-eecCCCCCeEEEEEEEEEECC
Confidence 344444 334566777888999887 6776 667788788888888887754
No 87
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=21.13 E-value=89 Score=22.12 Aligned_cols=21 Identities=10% Similarity=0.208 Sum_probs=16.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHH
Q 039443 33 MPEILDEATSYITHLQKNKES 53 (137)
Q Consensus 33 k~~il~~Ai~YIk~L~~~v~~ 53 (137)
..+.+..+++|++.++++++.
T Consensus 201 ~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 201 DQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp STTHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHHHHHhc
Confidence 357899999999999988753
No 88
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=20.99 E-value=50 Score=24.98 Aligned_cols=45 Identities=22% Similarity=0.415 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHH
Q 039443 11 RTHMKDLISQLASLIPSSSKLSMPEILDEATSYITHLQKNKESLER 56 (137)
Q Consensus 11 R~~mn~~~~~Lrsl~P~~~k~~k~~il~~Ai~YIk~L~~~v~~L~~ 56 (137)
|.-++....+||.|.-. .=..-.+++.+|++|.+.|.+-...|+.
T Consensus 53 ~~Dl~~F~~QL~qL~~~-~i~~Tre~v~d~l~YLkkLD~l~~~Lq~ 97 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIKD-DISNTQEIIKDVLEYLKKLDEIYGSLRN 97 (204)
T ss_dssp HHHHHHHHHHHHHHHHH-SCSTTHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556667766543 1123457899999999999888777664
No 89
>2d0o_B DIOL dehydratase-reactivating factor small subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.51.3.2 PDB: 2d0p_B
Probab=20.51 E-value=1.7e+02 Score=20.18 Aligned_cols=28 Identities=11% Similarity=0.159 Sum_probs=22.4
Q ss_pred EEEEecCCCcchHHHHHHHHHhCCcEEE
Q 039443 83 VNLICGSNRNFMFHEIISVLEEGAAEVI 110 (137)
Q Consensus 83 V~~~~~~~~~~~L~~il~~Le~~~L~V~ 110 (137)
|++.+.......|..|+..+||+|+-..
T Consensus 10 I~i~~~~~~~~~l~evl~GIEEEGip~~ 37 (125)
T 2d0o_B 10 IAIAVIDGCDGLWREVLLGIEEEGIPFR 37 (125)
T ss_dssp EEEEEETTCGGGGHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCcHHHHHHHHhhhcccCCCeE
Confidence 5555655556789999999999999876
No 90
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=20.45 E-value=1.8e+02 Score=18.81 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 039443 11 RTHMKDLISQLASLIPSSSKLSMPEILDEATSYITHLQKNKESLERRRALLK 62 (137)
Q Consensus 11 R~~mn~~~~~Lrsl~P~~~k~~k~~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 62 (137)
|++..+.+..||.-+ ..-|..=++-|+.|++.++....+...+.
T Consensus 35 rqkekEqL~~LKkkl--------~~el~~h~~ei~~le~~i~rhk~~i~~l~ 78 (84)
T 1gmj_A 35 RARAKEQLAALKKHK--------ENEISHHAKEIERLQKEIERHKQSIKKLK 78 (84)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566677777787644 33456666677777777777766665553
Done!