BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039444
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 81/129 (62%), Gaps = 10/129 (7%)
Query: 1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGF-VENDNEG--- 56
G +EE KL S N PIY P +EVK+++E EGSF+IL LETF+ + GF +++D +G
Sbjct: 252 GHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDAGFSIDDDYQGRSH 311
Query: 57 ----LDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFA 112
D++AR HV +VR++ E +++S G +AI ++ R K ++L G+G +
Sbjct: 312 SPVSCDEHARAAHVASVVRSIYEPILASHFG-EAILPDLSHRIA-KNAAKVLRSGKGFYD 369
Query: 113 NLLISLVKK 121
+++ISL KK
Sbjct: 370 SVIISLAKK 378
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 76/121 (62%), Gaps = 7/121 (5%)
Query: 1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKY 60
G +EE KL S N P+Y P +EVK ++E EGSF+IL LETF V + GF + D++
Sbjct: 253 GHLEEEKLDSFNLPVYIPSAEEVKCIVEEEGSFEILYLETFKVLYDAGFSID-----DEH 307
Query: 61 ARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVK 120
+ ++V VRAV E +++S G +AI +I+ R+ K ++L G+G + NL+ISL K
Sbjct: 308 IKAEYVASSVRAVYEPILASHFG-EAIIPDIFHRFA-KHAAKVLPLGKGFYNNLIISLAK 365
Query: 121 K 121
K
Sbjct: 366 K 366
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKY 60
G IEE K+ N P YTP EV+ I +EGSF I +E + W + D G
Sbjct: 240 GLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSSCTKDGDGGG-SVE 298
Query: 61 ARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVK 120
G +V R +RAV E L+ G +AI E+++ RY++ + E + K + F N+++SL++
Sbjct: 299 EEGYNVARCMRAVAEPLLLDHFG-EAIIEDVFHRYKLLII-ERMSKEKTKFINVIVSLIR 356
Query: 121 K 121
K
Sbjct: 357 K 357
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKY 60
G + K N P+Y P + + K+V++ GSF I +L V + G NE D
Sbjct: 258 GLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKL----VVYKGGSPLVVNEPDDAS 313
Query: 61 ARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVT 100
G+ R+V LV + G++ ++ +++ R E + T
Sbjct: 314 EVGRAFASSCRSVAGVLVEAHIGEE-LSNKLFSRVESRAT 352
>pdb|4EVW|A Chain A, Crystal Structure Of The Nucleoside-Diphosphate-Sugar
Pyrophosphorylase From Vibrio Cholerae Rc9. Northeast
Structural Genomics Consortium (Nesg) Target Vcr193.
pdb|4EVW|B Chain B, Crystal Structure Of The Nucleoside-Diphosphate-Sugar
Pyrophosphorylase From Vibrio Cholerae Rc9. Northeast
Structural Genomics Consortium (Nesg) Target Vcr193
Length = 255
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 24/120 (20%)
Query: 23 VKQVIEREGSFDILQLETFHVSWL--------EGFVENDNEGLDK--YARGKHV--TRLV 70
KQ ++ +GS + ++TF +++ +G++E G D +A+ +H T+++
Sbjct: 99 AKQGVDYQGSITVFNIDTFRPNFVFPDISQHSDGYLEVFQGGGDNWSFAKPEHAGSTKVI 158
Query: 71 RAVVESLVSSICG---------DDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVKK 121
+ ++ +S +C +D + E YR Y + + E E+G A L L++K
Sbjct: 159 QTAEKNPISDLCSTGLYHFNRKEDYL--EAYREYVARPSQE-WERGELYIAPLYNELIQK 215
>pdb|3EMC|A Chain A, Crystal Structure Of Xynb, An Intracellular Xylanase From
Paenibacillus Barcinonensis
pdb|3EMQ|A Chain A, Crystal Structure Of Xilanase Xynb From Paenibacillus
Barcelonensis Complexed With An Inhibitor
pdb|3EMZ|A Chain A, Crystal Structure Of Xylanase Xynb From Paenibacillus
Barcinonensis Complexed With A Conduramine Derivative
Length = 331
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 12 NFPIYTPYVDEVKQVIEREGSFDI 35
++ I+ P +DE++Q IER S D+
Sbjct: 211 HWNIHGPSMDEIRQAIERYASLDV 234
>pdb|3UQZ|A Chain A, X-Ray Structure Of Dna Processing Protein A (Dpra) From
Streptococcus Pneumoniae
pdb|3UQZ|B Chain B, X-Ray Structure Of Dna Processing Protein A (Dpra) From
Streptococcus Pneumoniae
pdb|3UQZ|C Chain C, X-Ray Structure Of Dna Processing Protein A (Dpra) From
Streptococcus Pneumoniae
Length = 288
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/67 (22%), Positives = 30/67 (44%)
Query: 46 LEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILE 105
L+ ++ ND+ L +Y G+ + +++ +C +AE R + + E
Sbjct: 180 LQDYIGNDHLVLSEYGPGEQPLKFHFPARNRIIAGLCRGVIVAEAKXRSGSLITCERAXE 239
Query: 106 KGRGAFA 112
+GR FA
Sbjct: 240 EGRDVFA 246
>pdb|4GBA|A Chain A, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
pdb|4GBA|B Chain B, Dcnl Complex With N-terminally Acetylated Nedd8 E2 Peptide
Length = 221
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 89 EEIYRRYEIKVTDEILEKGRGAFANLLI 116
EE++RRY+ + D ILE+G F N L
Sbjct: 9 EELFRRYKDEREDAILEEGMERFCNDLC 36
>pdb|1BWL|A Chain A, Old Yellow Enzyme (Oye1) Double Mutant H191n:n194h
Length = 399
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 4 EESKLKSSNFPIYTPYVDEVKQVIER---------EGSFDILQLETFHVSWLEGFVE-ND 53
+E+K K +N P ++ DE+KQ I+ D +++ + H L F++ +
Sbjct: 147 QEAKAKKANNPQHSLTKDEIKQYIKEYVQAAKNSIAAGADGVEINSAHGYLLNQFLDPHS 206
Query: 54 NEGLDKYARG-KHVTRLVRAVVESLVSSI 81
N D+Y ++ R VV++LV +I
Sbjct: 207 NTRTDEYGGSIENRARFTLEVVDALVEAI 235
>pdb|3C2H|A Chain A, Crystal Structure Of Sys-1 At 2.6a Resolution
pdb|3C2H|B Chain B, Crystal Structure Of Sys-1 At 2.6a Resolution
Length = 619
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 18 PYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESL 77
P + + QVI R +FD+L L ++GFV +D G L+RA + L
Sbjct: 251 PELAHLIQVIIR--TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCK-L 307
Query: 78 VSSICGDDAIAEE--------IYRRYEIKVTDEILEKGRGAFANLL 115
+ + A+A+ + R EI DE++ G G +N++
Sbjct: 308 LLQVSDAKALAKTPLENILPFLLRLIEIHPDDEVIYSGTGFLSNVV 353
>pdb|3C2G|A Chain A, Crystal Complex Of Sys-1POP-1 At 2.5a Resolution
pdb|3C2G|B Chain B, Crystal Complex Of Sys-1POP-1 At 2.5a Resolution
Length = 619
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 47/106 (44%), Gaps = 11/106 (10%)
Query: 18 PYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESL 77
P + + QVI R +FD+L L ++GFV +D G L+RA + L
Sbjct: 251 PELAHLIQVIIR--TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCK-L 307
Query: 78 VSSICGDDAIAEE--------IYRRYEIKVTDEILEKGRGAFANLL 115
+ + A+A+ + R EI DE++ G G +N++
Sbjct: 308 LLQVSDAKALAKTPLENILPFLLRLIEIHPDDEVIYSGTGFLSNVV 353
>pdb|1EH5|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Palmitate
pdb|1EI9|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
pdb|1EXW|A Chain A, Crystal Structure Of Palmitoyl Protein Thioesterase 1
Complexed With Hexadecylsulfonyl Fluoride
Length = 279
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 71 RAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKG 107
+A+ E LV + D I E+IYR + I + D E+G
Sbjct: 147 KAIQERLVQAEYWHDPIREDIYRNHSIFLADINQERG 183
>pdb|3GHQ|A Chain A, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|B Chain B, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|C Chain C, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|D Chain D, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|E Chain E, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|F Chain F, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|G Chain G, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|H Chain H, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|I Chain I, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|J Chain J, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|K Chain K, Crystal Structure Of E. Coli W35f Bfr Mutant
pdb|3GHQ|L Chain L, Crystal Structure Of E. Coli W35f Bfr Mutant
Length = 158
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 10 SSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLE 47
+ N Y D V + R+ +IL+ E H+ WLE
Sbjct: 98 AKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLE 135
>pdb|2PPV|A Chain A, Crystal Structure Of A Protein Belonging To The Upf0052
(Se_0549) From Staphylococcus Epidermidis Atcc 12228 At
2.00 A Resolution
Length = 332
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 58 DKYARGKHVTRLVRAVVESLVS-SICGDDAIAEEIYRRYEIK 98
D Y +H+ L R V E + IC ++ ++++ +RYE K
Sbjct: 226 DNYDVKEHIDALTRQVGEPFIDFVICSSESYSKDVLQRYEEK 267
>pdb|1BCF|A Chain A, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|B Chain B, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BFR|A Chain A, Iron Storage And Electron Transport
pdb|1BFR|B Chain B, Iron Storage And Electron Transport
pdb|1BFR|C Chain C, Iron Storage And Electron Transport
pdb|1BFR|D Chain D, Iron Storage And Electron Transport
pdb|1BFR|E Chain E, Iron Storage And Electron Transport
pdb|1BFR|F Chain F, Iron Storage And Electron Transport
pdb|1BFR|G Chain G, Iron Storage And Electron Transport
pdb|1BFR|H Chain H, Iron Storage And Electron Transport
pdb|1BFR|I Chain I, Iron Storage And Electron Transport
pdb|1BFR|J Chain J, Iron Storage And Electron Transport
pdb|1BFR|K Chain K, Iron Storage And Electron Transport
pdb|1BFR|L Chain L, Iron Storage And Electron Transport
pdb|1BFR|M Chain M, Iron Storage And Electron Transport
pdb|1BFR|N Chain N, Iron Storage And Electron Transport
pdb|1BFR|O Chain O, Iron Storage And Electron Transport
pdb|1BFR|P Chain P, Iron Storage And Electron Transport
pdb|1BFR|Q Chain Q, Iron Storage And Electron Transport
pdb|1BFR|R Chain R, Iron Storage And Electron Transport
pdb|1BFR|S Chain S, Iron Storage And Electron Transport
pdb|1BFR|T Chain T, Iron Storage And Electron Transport
pdb|1BFR|U Chain U, Iron Storage And Electron Transport
pdb|1BFR|V Chain V, Iron Storage And Electron Transport
pdb|1BFR|W Chain W, Iron Storage And Electron Transport
pdb|1BFR|X Chain X, Iron Storage And Electron Transport
pdb|2HTN|A Chain A, E. Coli Bacterioferritin In Its As-Isolated Form
pdb|2HTN|B Chain B, E. Coli Bacterioferritin In Its As-Isolated Form
pdb|2HTN|C Chain C, E. Coli Bacterioferritin In Its As-Isolated Form
pdb|2HTN|D Chain D, E. Coli Bacterioferritin In Its As-Isolated Form
pdb|2HTN|E Chain E, E. Coli Bacterioferritin In Its As-Isolated Form
pdb|2HTN|F Chain F, E. Coli Bacterioferritin In Its As-Isolated Form
pdb|2HTN|G Chain G, E. Coli Bacterioferritin In Its As-Isolated Form
pdb|2HTN|H Chain H, E. Coli Bacterioferritin In Its As-Isolated Form
pdb|1BCF|C Chain C, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|D Chain D, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|E Chain E, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|F Chain F, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|G Chain G, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|H Chain H, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|I Chain I, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|J Chain J, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|K Chain K, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|1BCF|L Chain L, The Structure Of A Unique, Two-Fold Symmetric,
Haem-Binding Site
pdb|2VXI|A Chain A, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|B Chain B, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|C Chain C, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|D Chain D, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|E Chain E, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|F Chain F, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|G Chain G, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|H Chain H, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|I Chain I, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|J Chain J, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|K Chain K, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|2VXI|L Chain L, The Binding Of Heme And Zinc In Escherichia Coli
Bacterioferritin
pdb|3E1J|A Chain A, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|B Chain B, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|C Chain C, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|D Chain D, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|E Chain E, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|F Chain F, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|G Chain G, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|H Chain H, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|I Chain I, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|J Chain J, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|K Chain K, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1J|L Chain L, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
An Unoccupied Ferroxidase Centre (Apo-Bfr).
pdb|3E1L|A Chain A, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|B Chain B, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|C Chain C, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|D Chain D, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|E Chain E, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|F Chain F, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|G Chain G, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|H Chain H, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|I Chain I, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|J Chain J, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|K Chain K, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1L|L Chain L, Crystal Structure Of E. Coli Bacterioferritin (Bfr) Soaked
In Phosphate With An Alternative Conformation Of The
Unoccupied Ferroxidase Centre (Apo-Bfr Ii).
pdb|3E1M|A Chain A, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|B Chain B, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|C Chain C, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|D Chain D, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|E Chain E, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|F Chain F, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|G Chain G, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|H Chain H, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|I Chain I, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|J Chain J, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|K Chain K, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1M|L Chain L, Crystal Structure Of E. Coli Bacterioferritin (Bfr)
Obtained After Soaking Apo-Bfr Crystals For 2.5 Minutes
In Fe2+ (2.5m Fe(Ii)-Bfr)
pdb|3E1N|A Chain A, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|B Chain B, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|C Chain C, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|D Chain D, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|E Chain E, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|F Chain F, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|G Chain G, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|H Chain H, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|I Chain I, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|J Chain J, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|K Chain K, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1N|L Chain L, Crystal Structure Of E. Coli Bacterioferritin (Bfr) After
A 65 Minute (Aerobic) Exposure To Fe(Ii) Revealing A
Possible Mu-Oxo BridgeMU-Hydroxy Bridged Diiron
Intermediate At The Ferroxidase Centre.
(Fe(Iii)-O-Fe(Iii)- Bfr).
pdb|3E1O|A Chain A, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|B Chain B, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|C Chain C, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|D Chain D, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|E Chain E, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|F Chain F, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|G Chain G, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|H Chain H, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|I Chain I, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|J Chain J, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|K Chain K, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1O|L Chain L, Crystal Structure Of E. Coli Bacterioferritin (Bfr) With
Two Zn(Ii) Ion Sites At The Ferroxidase Centre (Zn-Bfr).
pdb|3E1P|A Chain A, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|B Chain B, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|C Chain C, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|D Chain D, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|E Chain E, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|F Chain F, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|G Chain G, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|H Chain H, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|I Chain I, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|J Chain J, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|K Chain K, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|3E1P|L Chain L, Crystal Structure Of E. Coli Bacterioferritin (Bfr) In
Which The Ferroxidase Centre Is Inhibited With Zn(Ii)
And High Occupancy Iron Is Bound Within The Cavity.
pdb|2Y3Q|A Chain A, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|B Chain B, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|C Chain C, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|D Chain D, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|E Chain E, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|F Chain F, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|G Chain G, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|H Chain H, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|I Chain I, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|J Chain J, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|K Chain K, 1.55a Structure Of Apo Bacterioferritin From E. Coli
pdb|2Y3Q|L Chain L, 1.55a Structure Of Apo Bacterioferritin From E. Coli
Length = 158
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 10 SSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLE 47
+ N Y D V + R+ +IL+ E H+ WLE
Sbjct: 98 AKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLE 135
>pdb|1E6Y|A Chain A, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
pdb|1E6Y|D Chain D, Methyl-Coenzyme M Reductase From Methanosarcina Barkeri
Length = 569
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 73 VVESLVSSICGDDAIAEEIYRRYEIKVTDEILEK 106
V + V GDDA+A+EI +++ I + E E+
Sbjct: 171 VDDCYVKVFTGDDALADEIDKQFLIDINKEFSEE 204
>pdb|1YPX|A Chain A, Crystal Structure Of The Putative Vitamin-B12 Independent
Methionine Synthase From Listeria Monocytogenes,
Northeast Structural Genomics Target Lmr13
Length = 375
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 49 FVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGD 84
F+E DNE +A K+VTR +V L++S G+
Sbjct: 270 FLEYDNERSGDFAPLKYVTRPDLKIVLGLITSKTGE 305
>pdb|2FKZ|A Chain A, Reduced (All Ferrous) Form Of The Azotobacter Vinelandii
Bacterioferritin
pdb|2FKZ|B Chain B, Reduced (All Ferrous) Form Of The Azotobacter Vinelandii
Bacterioferritin
pdb|2FKZ|C Chain C, Reduced (All Ferrous) Form Of The Azotobacter Vinelandii
Bacterioferritin
pdb|2FKZ|D Chain D, Reduced (All Ferrous) Form Of The Azotobacter Vinelandii
Bacterioferritin
pdb|2FKZ|E Chain E, Reduced (All Ferrous) Form Of The Azotobacter Vinelandii
Bacterioferritin
pdb|2FKZ|F Chain F, Reduced (All Ferrous) Form Of The Azotobacter Vinelandii
Bacterioferritin
pdb|2FKZ|G Chain G, Reduced (All Ferrous) Form Of The Azotobacter Vinelandii
Bacterioferritin
pdb|2FKZ|H Chain H, Reduced (All Ferrous) Form Of The Azotobacter Vinelandii
Bacterioferritin
pdb|2FL0|A Chain A, Oxidized (All Ferric) Form Of The Azotobacter Vinelandii
Bacterioferritin
pdb|2FL0|B Chain B, Oxidized (All Ferric) Form Of The Azotobacter Vinelandii
Bacterioferritin
pdb|2FL0|C Chain C, Oxidized (All Ferric) Form Of The Azotobacter Vinelandii
Bacterioferritin
pdb|2FL0|D Chain D, Oxidized (All Ferric) Form Of The Azotobacter Vinelandii
Bacterioferritin
pdb|2FL0|E Chain E, Oxidized (All Ferric) Form Of The Azotobacter Vinelandii
Bacterioferritin
pdb|2FL0|F Chain F, Oxidized (All Ferric) Form Of The Azotobacter Vinelandii
Bacterioferritin
pdb|2FL0|G Chain G, Oxidized (All Ferric) Form Of The Azotobacter Vinelandii
Bacterioferritin
pdb|2FL0|H Chain H, Oxidized (All Ferric) Form Of The Azotobacter Vinelandii
Bacterioferritin
Length = 155
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 7 KLKSSNFP---IYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVEN-DNEGLDKYAR 62
KL+ + P Y + V RE DIL+ E H+ WLE ++ D GL+ Y +
Sbjct: 92 KLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQ 151
Query: 63 GK 64
+
Sbjct: 152 SQ 153
>pdb|1QB4|A Chain A, Crystal Structure Of Mn(2+)-Bound Phosphoenolpyruvate
Carboxylase
pdb|1JQN|A Chain A, Crystal Structure Of E.Coli Phosphoenolpyruvate
Carboxylase In Complex With Mn2+ And Dcdp
pdb|1FIY|A Chain A, Three-Dimensional Structure Of Phosphoenolpyruvate
Carboxylase From Escherichia Coli At 2.8 A Resolution
Length = 883
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 59 KYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLL 115
K A G+H+ V + + SS G+DA +E+ + DE+L R AF+ L
Sbjct: 24 KDALGEHILERVETIRKLSKSSRAGNDANRQELLTTLQNLSNDELLPVAR-AFSQFL 79
>pdb|1SOF|A Chain A, Crystal Structure Of The Azotobacter Vinelandii
Bacterioferritin At 2.6 A Resolution
pdb|1SOF|B Chain B, Crystal Structure Of The Azotobacter Vinelandii
Bacterioferritin At 2.6 A Resolution
pdb|1SOF|C Chain C, Crystal Structure Of The Azotobacter Vinelandii
Bacterioferritin At 2.6 A Resolution
pdb|1SOF|D Chain D, Crystal Structure Of The Azotobacter Vinelandii
Bacterioferritin At 2.6 A Resolution
pdb|1SOF|E Chain E, Crystal Structure Of The Azotobacter Vinelandii
Bacterioferritin At 2.6 A Resolution
pdb|1SOF|F Chain F, Crystal Structure Of The Azotobacter Vinelandii
Bacterioferritin At 2.6 A Resolution
pdb|1SOF|G Chain G, Crystal Structure Of The Azotobacter Vinelandii
Bacterioferritin At 2.6 A Resolution
pdb|1SOF|H Chain H, Crystal Structure Of The Azotobacter Vinelandii
Bacterioferritin At 2.6 A Resolution
Length = 156
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 7 KLKSSNFP---IYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVEN-DNEGLDKYAR 62
KL+ + P Y + V RE DIL+ E H+ WLE ++ D GL+ Y +
Sbjct: 92 KLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDLIDKIGLENYLQ 151
Query: 63 GK 64
+
Sbjct: 152 SQ 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,513,440
Number of Sequences: 62578
Number of extensions: 135055
Number of successful extensions: 431
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 406
Number of HSP's gapped (non-prelim): 28
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)