Query 039444
Match_columns 121
No_of_seqs 101 out of 321
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 09:41:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 1.1E-35 2.4E-40 242.7 12.4 114 1-120 270-385 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 2.5E-35 5.5E-40 236.8 13.4 118 1-121 214-334 (334)
3 PHA00457 inhibitor of host bac 73.6 4.1 8.9E-05 25.4 2.6 33 7-39 23-58 (63)
4 PF02375 JmjN: jmjN domain; I 68.1 1.9 4.1E-05 23.8 0.2 15 14-28 1-15 (34)
5 PF14904 FAM86: Family of unkn 66.1 8.8 0.00019 26.3 3.2 31 67-98 67-99 (100)
6 smart00545 JmjN Small domain f 60.1 5.5 0.00012 22.9 1.2 16 13-28 2-17 (42)
7 PRK14103 trans-aconitate 2-met 54.4 84 0.0018 23.8 7.3 72 14-102 159-231 (255)
8 COG4342 Uncharacterized protei 47.3 13 0.00029 29.7 1.8 30 7-36 110-142 (291)
9 PRK01683 trans-aconitate 2-met 46.7 1.2E+02 0.0027 22.7 9.0 72 14-102 162-234 (258)
10 KOG3262 H/ACA small nucleolar 42.7 16 0.00036 27.9 1.6 39 3-41 71-114 (215)
11 COG4090 Uncharacterized protei 41.5 25 0.00054 25.5 2.3 37 11-47 95-135 (154)
12 PF12426 DUF3674: RNA dependen 39.8 18 0.00038 20.9 1.1 17 3-19 20-36 (41)
13 COG1232 HemY Protoporphyrinoge 39.2 29 0.00063 29.5 2.8 27 73-100 136-162 (444)
14 PF09921 DUF2153: Uncharacteri 36.8 91 0.002 22.2 4.5 40 62-102 38-81 (126)
15 PF06043 Reo_P9: Reovirus P9-l 36.1 27 0.00058 28.4 2.0 30 11-40 251-280 (333)
16 PF14205 Cys_rich_KTR: Cystein 34.8 17 0.00036 22.3 0.5 8 12-19 26-33 (55)
17 PF08704 GCD14: tRNA methyltra 33.4 48 0.001 25.9 3.0 33 15-47 144-179 (247)
18 PF12631 GTPase_Cys_C: Catalyt 33.2 32 0.00069 21.5 1.6 32 63-95 38-72 (73)
19 PRK00767 transcriptional regul 32.6 76 0.0016 22.4 3.8 40 62-102 31-71 (197)
20 PF08427 DUF1741: Domain of un 31.4 1E+02 0.0022 24.1 4.4 50 16-75 181-231 (237)
21 PF07340 Herpes_IE1: Cytomegal 31.0 30 0.00065 29.0 1.5 17 13-29 362-378 (392)
22 PF07288 DUF1447: Protein of u 30.5 73 0.0016 20.3 2.9 26 17-42 26-51 (69)
23 TIGR02021 BchM-ChlM magnesium 30.3 42 0.0009 24.7 2.1 29 13-42 180-208 (219)
24 PF07466 DUF1517: Protein of u 30.1 88 0.0019 25.0 4.0 35 12-47 233-267 (289)
25 TIGR03762 exosort_arch archaea 30.0 67 0.0014 25.8 3.3 30 65-96 226-255 (274)
26 PF02095 Extensin_1: Extensin- 28.1 22 0.00047 14.5 0.1 8 14-21 2-9 (10)
27 TIGR03384 betaine_BetI transcr 27.4 1.1E+02 0.0023 21.4 3.8 29 73-101 40-69 (189)
28 PF09630 DUF2024: Domain of un 25.5 60 0.0013 21.4 1.9 17 20-36 64-80 (81)
29 PRK15008 HTH-type transcriptio 25.1 1.2E+02 0.0026 22.1 3.8 38 63-101 41-79 (212)
30 KOG0362 Chaperonin complex com 25.1 93 0.002 27.2 3.5 58 62-119 34-107 (537)
31 PRK09480 slmA division inhibit 24.5 1.2E+02 0.0026 21.2 3.6 27 74-100 43-70 (194)
32 cd00173 SH2 Src homology 2 dom 24.4 81 0.0018 19.6 2.5 26 14-39 1-30 (94)
33 PF12221 HflK_N: Bacterial mem 23.3 82 0.0018 18.0 2.0 15 88-102 23-37 (42)
34 cd08788 CARD_NOD2_2_CARD15 Cas 22.7 37 0.0008 22.4 0.6 27 1-28 27-53 (81)
35 TIGR03113 exosortase_2 exosort 22.5 71 0.0015 25.3 2.2 30 65-95 215-244 (268)
36 PF00876 Innexin: Innexin; In 22.3 68 0.0015 25.9 2.1 24 75-98 322-348 (348)
37 TIGR01229 rocF_arginase argina 22.2 2.8E+02 0.0061 21.8 5.6 60 8-75 226-296 (300)
38 TIGR02752 MenG_heptapren 2-hep 22.1 1E+02 0.0022 22.7 2.9 25 16-41 195-219 (231)
39 COG1458 Predicted DNA-binding 21.9 57 0.0012 25.2 1.5 37 11-47 45-85 (221)
40 cd04330 RNAP_III_Rpc25_N RNAP_ 21.6 69 0.0015 20.5 1.7 23 80-102 15-40 (80)
41 smart00828 PKS_MT Methyltransf 21.3 1.3E+02 0.0027 22.0 3.3 29 13-42 118-146 (224)
42 PRK10668 DNA-binding transcrip 21.0 1.3E+02 0.0027 21.7 3.2 28 73-100 43-71 (215)
43 COG2519 GCD14 tRNA(1-methylade 20.8 71 0.0015 25.4 1.9 33 15-47 193-228 (256)
44 PF03721 UDPG_MGDP_dh_N: UDP-g 20.3 66 0.0014 23.6 1.5 34 3-36 31-67 (185)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=1.1e-35 Score=242.67 Aligned_cols=114 Identities=29% Similarity=0.437 Sum_probs=104.6
Q ss_pred CCccccccCcccCCccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHh
Q 039444 1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSS 80 (121)
Q Consensus 1 GlI~eeklDSFNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~ 80 (121)
|+|++||+||||+|+|+||++||+++|+++|||+|++||+++..|++ .++. +.|....|+++|+++||++||||++
T Consensus 270 GlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~I~~le~~~~~~~~--~~~~--~~d~~~~g~~~a~~~RA~~E~ll~~ 345 (386)
T PLN02668 270 GLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFAIDKLEVFKGGSPL--VVNE--PDDAAEVGRAMANSCRSVAGVLVDA 345 (386)
T ss_pred CCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEEeeeeEEeeccCcc--cccC--cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999986 3321 2355678999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHHHhhhHHHh--cCCceeEEEEEEee
Q 039444 81 ICGDDAIAEEIYRRYEIKVTDEILEK--GRGAFANLLISLVK 120 (121)
Q Consensus 81 HFG~~~I~DeLF~r~~~~v~~~~~~~--~~~~~~~~~vsL~r 120 (121)
||| ++|||+||+||+++++++ ++. ++.+++++++||+-
T Consensus 346 HFG-~~i~D~lF~r~~~~v~~~-~~~~~~~~~~~~~~~sL~~ 385 (386)
T PLN02668 346 HIG-EELSNELFLRVERRATSH-AKELLEKLQFFHIVASLSF 385 (386)
T ss_pred HcC-HHHHHHHHHHHHHHHHHH-HHhhcccCceEEEEEEEec
Confidence 999 999999999999999999 888 88899999999974
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=2.5e-35 Score=236.79 Aligned_cols=118 Identities=38% Similarity=0.653 Sum_probs=96.3
Q ss_pred CCccccccCcccCCccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHh
Q 039444 1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSS 80 (121)
Q Consensus 1 GlI~eeklDSFNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~ 80 (121)
|+|++||+|+||+|+|+||++||+++|+++|||+|++||+++..|... ..+.....|...+|+.+|+++||++||||++
T Consensus 214 GlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~iRA~~e~~l~~ 292 (334)
T PF03492_consen 214 GLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLELFEQPWWSV-PDDESWKEDAKEYARNVANYIRAVFEPLLKA 292 (334)
T ss_dssp TSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEEEEEEETCCT-CTTT-STTTHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEEEEeeccccc-chhhhcccchhhhHHHHHHhHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999665431 1111123456789999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHHHhhhHHHhcC---CceeEEEEEEeeC
Q 039444 81 ICGDDAIAEEIYRRYEIKVTDEILEKGR---GAFANLLISLVKK 121 (121)
Q Consensus 81 HFG~~~I~DeLF~r~~~~v~~~~~~~~~---~~~~~~~vsL~rk 121 (121)
||| ++|||+||+||+++++++ ++..+ .+++++++||+||
T Consensus 293 hfG-~ei~D~LF~r~~~~v~~~-~~~~~~~~~~~~~i~~~L~Rk 334 (334)
T PF03492_consen 293 HFG-EEIMDELFERYAKKVAEH-LEKEKSRNMKFVNIVVSLTRK 334 (334)
T ss_dssp HH--HHHHHHHHHHHHHHHHHH-HHHTHTT-BEEEEEEEEEEE-
T ss_pred HhC-hHHHHHHHHHHHHHHHHH-HHHhhccCCCcEEEEEEEeeC
Confidence 999 999999999999999999 77655 8899999999998
No 3
>PHA00457 inhibitor of host bacterial RNA polymerase
Probab=73.63 E-value=4.1 Score=25.44 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=27.0
Q ss_pred ccCcccCCccCCCHHHHHHHHH---hcCceeeeeee
Q 039444 7 KLKSSNFPIYTPYVDEVKQVIE---REGSFDILQLE 39 (121)
Q Consensus 7 klDSFNlP~Y~Ps~eEv~~~Ie---~eGsF~I~~le 39 (121)
.-.||-+|+|+-|.+|-.++-+ .+--|.+.|+.
T Consensus 23 ~~~sfEVPV~A~SLeeA~e~AE~~Y~~aGf~VtRiR 58 (63)
T PHA00457 23 SGQSFEVPVYAKSLEEATELAEWQYVPAGFVVTRIR 58 (63)
T ss_pred cCceEEeeeecccHHHHHHHHHHhhhccCcEEEEec
Confidence 4579999999999999888877 45678888764
No 4
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=68.12 E-value=1.9 Score=23.80 Aligned_cols=15 Identities=33% Similarity=0.780 Sum_probs=8.3
Q ss_pred CccCCCHHHHHHHHH
Q 039444 14 PIYTPYVDEVKQVIE 28 (121)
Q Consensus 14 P~Y~Ps~eEv~~~Ie 28 (121)
|.|.||.+|.+..+.
T Consensus 1 Pvf~Pt~eEF~dp~~ 15 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIK 15 (34)
T ss_dssp EEE---HHHHS-HHH
T ss_pred CcccCCHHHHhCHHH
Confidence 788899999876654
No 5
>PF14904 FAM86: Family of unknown function
Probab=66.06 E-value=8.8 Score=26.27 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhh--hCChhHHHHHHHHHHHH
Q 039444 67 TRLVRAVVESLVSSI--CGDDAIAEEIYRRYEIK 98 (121)
Q Consensus 67 a~~iRAv~Epll~~H--FG~~~I~DeLF~r~~~~ 98 (121)
.+|.|+++--+|.+| .| .++.|+|++.|+..
T Consensus 67 ~kY~~~FLk~lI~k~Ea~~-~EplDeLYealae~ 99 (100)
T PF14904_consen 67 VKYRRCFLKELIKKHEAVH-CEPLDELYEALAEV 99 (100)
T ss_pred hhHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHhh
Confidence 578999999999876 57 99999999999864
No 6
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=60.11 E-value=5.5 Score=22.93 Aligned_cols=16 Identities=25% Similarity=0.702 Sum_probs=13.4
Q ss_pred CCccCCCHHHHHHHHH
Q 039444 13 FPIYTPYVDEVKQVIE 28 (121)
Q Consensus 13 lP~Y~Ps~eEv~~~Ie 28 (121)
+|+|.||.+|.+.-+.
T Consensus 2 iPvf~Pt~eEF~Dp~~ 17 (42)
T smart00545 2 IPVFYPTMEEFKDPLA 17 (42)
T ss_pred CCeEcCCHHHHHCHHH
Confidence 6999999999887654
No 7
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=54.44 E-value=84 Score=23.75 Aligned_cols=72 Identities=10% Similarity=0.049 Sum_probs=46.2
Q ss_pred CccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHH-HHHHHHhhhCChhHHHHHH
Q 039444 14 PIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAV-VESLVSSICGDDAIAEEIY 92 (121)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv-~Epll~~HFG~~~I~DeLF 92 (121)
+.+.++++++.+++++.| |++...+..... + .. ....+...+++. +.|++. .++ ++-.+++-
T Consensus 159 ~~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~--~--~~----------~~~~~~~~~~~~~~~~~~~-~l~-~~~~~~~~ 221 (255)
T PRK14103 159 GAVVQTPAGYAELLTDAG-CKVDAWETTYVH--Q--LT----------GEDPVLDWITGTALRPVRE-RLS-DDSWEQFR 221 (255)
T ss_pred CcCCCCHHHHHHHHHhCC-CeEEEEeeeeee--e--CC----------Cchhhhhhhhccchhhhhh-hCC-HHHHHHHH
Confidence 446679999999999999 777665542211 1 00 112222334432 345554 899 88888888
Q ss_pred HHHHHHHhhh
Q 039444 93 RRYEIKVTDE 102 (121)
Q Consensus 93 ~r~~~~v~~~ 102 (121)
+.+.+.+.+.
T Consensus 222 ~~~~~~l~~~ 231 (255)
T PRK14103 222 AELIPLLREA 231 (255)
T ss_pred HHHHHHHHHH
Confidence 8888888876
No 8
>COG4342 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.32 E-value=13 Score=29.71 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=24.1
Q ss_pred ccCccc-CCccCCCHHHHH--HHHHhcCceeee
Q 039444 7 KLKSSN-FPIYTPYVDEVK--QVIEREGSFDIL 36 (121)
Q Consensus 7 klDSFN-lP~Y~Ps~eEv~--~~Ie~eGsF~I~ 36 (121)
|++-+| .-.|.||.||++ +.+.++-++.+.
T Consensus 110 k~k~~~g~dlyIp~de~ir~~~~l~r~~~e~~y 142 (291)
T COG4342 110 KVKKSNGVDLYIPSDEEIRATEELAREYSERAY 142 (291)
T ss_pred ccCcCCCcceecCCHHHHHHHHHHHHHhcchHH
Confidence 677888 899999999999 777777665543
No 9
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=46.70 E-value=1.2e+02 Score=22.69 Aligned_cols=72 Identities=6% Similarity=0.118 Sum_probs=47.6
Q ss_pred CccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHH-HHHHHHhhhCChhHHHHHH
Q 039444 14 PIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAV-VESLVSSICGDDAIAEEIY 92 (121)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv-~Epll~~HFG~~~I~DeLF 92 (121)
+.+.|+++++.+.+.+.|. .++..+.. +... . .+...+..++++. +.|++ .+++ .+-.+++-
T Consensus 162 ~~~~~~~~~~~~~l~~~g~-~v~~~~~~---~~~~-~----------~~~~~~~~~~~~~~~~~~~-~~l~-~~~~~~f~ 224 (258)
T PRK01683 162 RAPLPPPHAYYDALAPAAC-RVDIWHTT---YYHP-M----------PSAQAIVEWVKGTGLRPFL-DPLT-ESEQAAFL 224 (258)
T ss_pred CcCCCCHHHHHHHHHhCCC-ceeeeeee---eeee-c----------CCchhhhhhhhhccHHHHH-hhCC-HHHHHHHH
Confidence 3467899999999999994 45444432 1110 1 1233344455653 45555 7899 99999999
Q ss_pred HHHHHHHhhh
Q 039444 93 RRYEIKVTDE 102 (121)
Q Consensus 93 ~r~~~~v~~~ 102 (121)
+.|...+.+.
T Consensus 225 ~~~~~~~~~~ 234 (258)
T PRK01683 225 AAYLARIAEA 234 (258)
T ss_pred HHHHHHHHHH
Confidence 9999888776
No 10
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=42.73 E-value=16 Score=27.88 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=30.8
Q ss_pred ccccccCcccCCccCCCHHHHHHHHH-----hcCceeeeeeeee
Q 039444 3 IEESKLKSSNFPIYTPYVDEVKQVIE-----REGSFDILQLETF 41 (121)
Q Consensus 3 I~eeklDSFNlP~Y~Ps~eEv~~~Ie-----~eGsF~I~~le~~ 41 (121)
++..|+--||.|+|.-+.+.|=.+=| .+-.|+|.-.+-+
T Consensus 71 ~~~~kIPyfNAPIylenk~qIGKVDEIfG~i~d~~fsIK~~dgv 114 (215)
T KOG3262|consen 71 LTNKKIPYFNAPIYLENKEQIGKVDEIFGPINDVHFSIKPSDGV 114 (215)
T ss_pred eccccCCCCCCceeecchhhhcchhhhcccccccEEEEecCCCc
Confidence 35678889999999999988776655 5778898777744
No 11
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=41.48 E-value=25 Score=25.52 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=25.3
Q ss_pred ccCCccCCCHHHHHHHHHhcCceeeee---eeeee-eccCc
Q 039444 11 SNFPIYTPYVDEVKQVIEREGSFDILQ---LETFH-VSWLE 47 (121)
Q Consensus 11 FNlP~Y~Ps~eEv~~~Ie~eGsF~I~~---le~~~-~~~~~ 47 (121)
--||.|.-+++.+|+++++.|-=.+-- |-.|+ ..|+.
T Consensus 95 LaMP~~gv~~d~~kel~ee~~~kkliGvCfm~mF~ragW~e 135 (154)
T COG4090 95 LAMPKIGVTPDDAKELLEELGNKKLIGVCFMNMFERAGWDE 135 (154)
T ss_pred cccCcCCCCHHHHHHHHHhcCCCceEEeeHHHHHHHcCcch
Confidence 358999999999999999766432322 22343 45765
No 12
>PF12426 DUF3674: RNA dependent RNA polymerase; InterPro: IPR024378 This domain is found in the RNA-directed RNA polymerase. It is located towards the N terminus and is approximately 40 amino acids in length. There is a conserved MFNLKF sequence motif. There are two completely conserved residues (E and P) that may be functionally important.
Probab=39.79 E-value=18 Score=20.85 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=13.6
Q ss_pred ccccccCcccCCccCCC
Q 039444 3 IEESKLKSSNFPIYTPY 19 (121)
Q Consensus 3 I~eeklDSFNlP~Y~Ps 19 (121)
|.-.|...|+||-|-|-
T Consensus 20 i~~~k~~~y~IP~Y~~~ 36 (41)
T PF12426_consen 20 IGGPKTQPYYIPDYRGI 36 (41)
T ss_pred eCCcccccccCCCCCCc
Confidence 45678889999999874
No 13
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=39.24 E-value=29 Score=29.48 Aligned_cols=27 Identities=11% Similarity=0.177 Sum_probs=22.6
Q ss_pred HHHHHHHhhhCChhHHHHHHHHHHHHHh
Q 039444 73 VVESLVSSICGDDAIAEEIYRRYEIKVT 100 (121)
Q Consensus 73 v~Epll~~HFG~~~I~DeLF~r~~~~v~ 100 (121)
-++..+..||| +++++.+|..|...+-
T Consensus 136 sv~~f~r~~fG-~ev~~~~~~pll~giy 162 (444)
T COG1232 136 SVGEFIRRRFG-EEVVERFIEPLLEGIY 162 (444)
T ss_pred CHHHHHHHHHh-HHHHHHHHHHHhhchh
Confidence 46788999999 9999999999987543
No 14
>PF09921 DUF2153: Uncharacterized protein conserved in archaea (DUF2153); InterPro: IPR014450 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.78 E-value=91 Score=22.20 Aligned_cols=40 Identities=13% Similarity=0.249 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHH----HHHHHHhhhCChhHHHHHHHHHHHHHhhh
Q 039444 62 RGKHVTRLVRAV----VESLVSSICGDDAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 62 ~~~~~a~~iRAv----~Epll~~HFG~~~I~DeLF~r~~~~v~~~ 102 (121)
--.++.+++.|+ ..|+|.+|.. .+.+.++..+.-+.+.+.
T Consensus 38 afqhm~RTlKaFd~WLqdP~ItshMP-reML~dv~~~~~~il~~l 81 (126)
T PF09921_consen 38 AFQHMMRTLKAFDQWLQDPMITSHMP-REMLEDVWETLREILEQL 81 (126)
T ss_pred HHHHHHHHHHHHHHHHcCchhHhcCC-HHHHHHHHHHHHHHHHHH
Confidence 345777888886 5799999999 999999998887777665
No 15
>PF06043 Reo_P9: Reovirus P9-like family; InterPro: IPR009268 These proteins of unknown function are found in Rice black streaked dwarf virus (RBSDV) and other viruses.; PDB: 3VJJ_B.
Probab=36.06 E-value=27 Score=28.39 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=15.8
Q ss_pred ccCCccCCCHHHHHHHHHhcCceeeeeeee
Q 039444 11 SNFPIYTPYVDEVKQVIEREGSFDILQLET 40 (121)
Q Consensus 11 FNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~ 40 (121)
|-+|--.-.++++.+.|.++|.|++-....
T Consensus 251 ~~L~s~is~p~~i~q~i~k~GLFk~i~s~~ 280 (333)
T PF06043_consen 251 FQLSSLISVPNSILQRIAKDGLFKIITSAT 280 (333)
T ss_dssp HH-SS-----HHHHHHHHHS-SEEE-----
T ss_pred HHhhhhcCChHHHHHHHHhcCceEEEeecc
Confidence 445666778999999999999999854443
No 16
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=34.77 E-value=17 Score=22.28 Aligned_cols=8 Identities=63% Similarity=1.414 Sum_probs=6.8
Q ss_pred cCCccCCC
Q 039444 12 NFPIYTPY 19 (121)
Q Consensus 12 NlP~Y~Ps 19 (121)
|+|.|+|-
T Consensus 26 NfPlyCpK 33 (55)
T PF14205_consen 26 NFPLYCPK 33 (55)
T ss_pred cccccCCC
Confidence 88999983
No 17
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=33.45 E-value=48 Score=25.87 Aligned_cols=33 Identities=24% Similarity=0.553 Sum_probs=27.2
Q ss_pred ccCCCHHHHHHHHH---hcCceeeeeeeeeeeccCc
Q 039444 15 IYTPYVDEVKQVIE---REGSFDILQLETFHVSWLE 47 (121)
Q Consensus 15 ~Y~Ps~eEv~~~Ie---~eGsF~I~~le~~~~~~~~ 47 (121)
.|.||.++|...++ +.|--.|+-+|++.-.|..
T Consensus 144 ~fsP~ieQv~~~~~~L~~~gf~~i~~~Evl~R~~~v 179 (247)
T PF08704_consen 144 CFSPCIEQVQKTVEALREHGFTDIETVEVLLREWEV 179 (247)
T ss_dssp EEESSHHHHHHHHHHHHHTTEEEEEEEEEEEEEEEE
T ss_pred EECCCHHHHHHHHHHHHHCCCeeeEEEEEEeeEEEE
Confidence 58999999998776 5787788999988877864
No 18
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=33.22 E-value=32 Score=21.52 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC---hhHHHHHHHHH
Q 039444 63 GKHVTRLVRAVVESLVSSICGD---DAIAEEIYRRY 95 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~---~~I~DeLF~r~ 95 (121)
...+|-.+|.+.+.| ..-.|. ++|+|.+|.+|
T Consensus 38 ~dl~a~~L~~A~~~L-~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 38 LDLVAEDLREALESL-GEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHHHHH-HHHCTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHH-HHHhCCCChHHHHHHHHHhh
Confidence 456777777777653 334443 88999999876
No 19
>PRK00767 transcriptional regulator BetI; Validated
Probab=32.63 E-value=76 Score=22.38 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 62 RGKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 62 ~~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
+-..+|+..= +.-+.|-.|||+ +++..++++++...+.+.
T Consensus 31 s~~~Ia~~aG-vs~gslY~~F~~Ke~L~~~~l~~~~~~~~~~ 71 (197)
T PRK00767 31 TIAQIARRAG-VSTGIISHYFGGKDGLLEATMRHLLRQLGDA 71 (197)
T ss_pred CHHHHHHHhC-CCHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 3344444443 567889999998 778888777777655544
No 20
>PF08427 DUF1741: Domain of unknown function (DUF1741); InterPro: IPR013636 This is a eukaryotic domain of unknown function.
Probab=31.43 E-value=1e+02 Score=24.12 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=33.3
Q ss_pred cCCCHHHHHHHHHhc-CceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHH
Q 039444 16 YTPYVDEVKQVIERE-GSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVE 75 (121)
Q Consensus 16 Y~Ps~eEv~~~Ie~e-GsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~E 75 (121)
=.+|++||-++|+++ .+.+|..-|.++ .|.+ +.+. + ......+.+|++++
T Consensus 181 ~~lt~~qV~~VIk~~YdtLsl~~~e~Ld-~~er--y~E~------~-~~~~~k~~~r~~v~ 231 (237)
T PF08427_consen 181 SNLTPEQVLEVIKQNYDTLSLKLQEGLD-QWER--YREA------P-EKSFLKRIARSAVD 231 (237)
T ss_pred CCCCHHHHHHHHHhCccceecchhhccc-cccc--cccC------c-hHHHHHHHHHHHHH
Confidence 368999999999987 567777777664 4555 4431 2 45556666666654
No 21
>PF07340 Herpes_IE1: Cytomegalovirus IE1 protein; InterPro: IPR010855 Expression from a human cytomegalovirus early promoter (E1.7) has been shown to be activated in trans by the IE2 gene product. Although the IE1 gene product alone had no effect on this early viral promoter, maximal early promoter activity was detected when both IE1 and IE2 gene products were present []. The IE1 protein from cytomegalovirus is also known as UL123.; GO: 0050792 regulation of viral reproduction, 0042025 host cell nucleus
Probab=30.96 E-value=30 Score=29.00 Aligned_cols=17 Identities=24% Similarity=0.600 Sum_probs=14.5
Q ss_pred CCccCCCHHHHHHHHHh
Q 039444 13 FPIYTPYVDEVKQVIER 29 (121)
Q Consensus 13 lP~Y~Ps~eEv~~~Ie~ 29 (121)
+-+|.||++|+|+|++.
T Consensus 362 ~k~~~~Sv~elR~Ia~d 378 (392)
T PF07340_consen 362 MKVCTPSVEELREIAND 378 (392)
T ss_pred ccccCCCHHHHHHHhcc
Confidence 34799999999999874
No 22
>PF07288 DUF1447: Protein of unknown function (DUF1447); InterPro: IPR009907 This family consists of several bacterial proteins of around 70 residues in length. The function of this family is unknown.
Probab=30.53 E-value=73 Score=20.35 Aligned_cols=26 Identities=15% Similarity=0.326 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHhcCceeeeeeeeee
Q 039444 17 TPYVDEVKQVIEREGSFDILQLETFH 42 (121)
Q Consensus 17 ~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (121)
+.|..|+|..|+.+-.|.|+-++.+.
T Consensus 26 a~s~~evR~~ve~~t~yNIEfI~~L~ 51 (69)
T PF07288_consen 26 AESEVEVRKLVEDNTPYNIEFIQPLS 51 (69)
T ss_pred cCCHHHHHHHHHhCCCcCEEEEeecc
Confidence 56889999999999999999999885
No 23
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=30.26 E-value=42 Score=24.71 Aligned_cols=29 Identities=10% Similarity=0.245 Sum_probs=24.3
Q ss_pred CCccCCCHHHHHHHHHhcCceeeeeeeeee
Q 039444 13 FPIYTPYVDEVKQVIEREGSFDILQLETFH 42 (121)
Q Consensus 13 lP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (121)
-+.|.++++|++++++..| |.|.+.+.+.
T Consensus 180 ~~~~~~~~~~~~~~l~~~G-f~v~~~~~~~ 208 (219)
T TIGR02021 180 TSAYLHPMTDLERALGELG-WKIVREGLVS 208 (219)
T ss_pred cceEEecHHHHHHHHHHcC-ceeeeeeccc
Confidence 3568889999999999999 8888887654
No 24
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=30.10 E-value=88 Score=25.03 Aligned_cols=35 Identities=17% Similarity=0.414 Sum_probs=33.0
Q ss_pred cCCccCCCHHHHHHHHHhcCceeeeeeeeeeeccCc
Q 039444 12 NFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLE 47 (121)
Q Consensus 12 NlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~ 47 (121)
.+|- ..+.+++|+.+++=|+..-++|..+++.|.|
T Consensus 233 ~lp~-~~~~~~l~~aL~~l~~~~~~~l~a~evlWtP 267 (289)
T PF07466_consen 233 KLPT-INSAEDLREALRKLGSISSDRLLAVEVLWTP 267 (289)
T ss_pred CCCC-CCCHHHHHHHHHHHhCCChhheeeEEEEECC
Confidence 7888 8899999999999999999999999999999
No 25
>TIGR03762 exosort_arch archaeal exosortase. Members of this family are archaeal homologs to bacterial PEP-CTERM-sorting protein exosortase (TIGR02602). Members of this family are found in species with an archaeal variant sorting motif, PEF-CTERM (TIGR03024). Members are found in the thermoacidophilic Aciduliprofundum boonei and the mesophilic psychromethanogens Methanosarcina mazei and Methanococcoides burtonii.
Probab=30.03 E-value=67 Score=25.79 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhhhCChhHHHHHHHHHH
Q 039444 65 HVTRLVRAVVESLVSSICGDDAIAEEIYRRYE 96 (121)
Q Consensus 65 ~~a~~iRAv~Epll~~HFG~~~I~DeLF~r~~ 96 (121)
.++|.+|...=.++.+|.| .+.++ .|+-+.
T Consensus 226 ~vaN~lRV~iL~lL~~~~g-~Eaae-f~H~~~ 255 (274)
T TIGR03762 226 YIVNLIRVTILYLIAYYYG-MEIMQ-LVHTHL 255 (274)
T ss_pred HHHHHHHHHHHHHHHHhcC-HHHHH-HHHcch
Confidence 7899999999999999999 88877 776554
No 26
>PF02095 Extensin_1: Extensin-like protein repeat; InterPro: IPR003883 Extensins are plant cell-wall proteins; they can account for up to 20% of the dry weight of the cell wall. They are highly-glycosylated, possibly reflecting their interactions with cell-wall carbohydrates. Amongst their functions is cell wall strengthening in response to mechanical stress (e.g., during attack by pests, plant-bending in the wind, etc.). This repeat occurs within extensin-like proteins.; GO: 0005199 structural constituent of cell wall
Probab=28.09 E-value=22 Score=14.51 Aligned_cols=8 Identities=50% Similarity=1.215 Sum_probs=5.6
Q ss_pred CccCCCHH
Q 039444 14 PIYTPYVD 21 (121)
Q Consensus 14 P~Y~Ps~e 21 (121)
|+|-|..+
T Consensus 2 P~ykPpve 9 (10)
T PF02095_consen 2 PVYKPPVE 9 (10)
T ss_pred CccCCCcc
Confidence 77887654
No 27
>TIGR03384 betaine_BetI transcriptional repressor BetI. BetI is a DNA-binding transcriptional repressor of the bet (betaine) regulon. In sequence, it is related to TetR (pfam00440). Choline, through BetI, induces the expression of the betaine biosynthesis genes betA and betB by derepression. The choline porter gene betT is also part of this regulon in Escherichia coli. Note that a different transcriptional regulator, ArcA, controls the expression of bet regulon genes in response to oxygen, as BetA is an oxygen-dependent enzyme.
Probab=27.41 E-value=1.1e+02 Score=21.39 Aligned_cols=29 Identities=17% Similarity=0.290 Sum_probs=20.1
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTD 101 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~ 101 (121)
+..+.|-.||++ ++++.++++++...+.+
T Consensus 40 vsk~~ly~~F~sK~~L~~~~~~~~~~~~~~ 69 (189)
T TIGR03384 40 VSSGIISHYFGGKQGLLEATMRHLLSELRA 69 (189)
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 456778899997 67777776666655443
No 28
>PF09630 DUF2024: Domain of unknown function (DUF2024); InterPro: IPR018592 This protein of 86 residues is expressed in bacteria. It consists of two alpha helices and four beta strands. Its function is unknown.; PDB: 2HFQ_A.
Probab=25.50 E-value=60 Score=21.39 Aligned_cols=17 Identities=41% Similarity=0.524 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCceeee
Q 039444 20 VDEVKQVIEREGSFDIL 36 (121)
Q Consensus 20 ~eEv~~~Ie~eGsF~I~ 36 (121)
++||++.|+++|-|.|.
T Consensus 64 ~~ev~~~I~~~Gy~I~~ 80 (81)
T PF09630_consen 64 PPEVEQAIKQQGYFIIK 80 (81)
T ss_dssp -HHHHHHHHHHSEEEE-
T ss_pred CHHHHHHHHHCCeEEEe
Confidence 57999999999999874
No 29
>PRK15008 HTH-type transcriptional regulator RutR; Provisional
Probab=25.10 E-value=1.2e+02 Score=22.08 Aligned_cols=38 Identities=11% Similarity=0.026 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTD 101 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~ 101 (121)
-..+|... .|..+.|-.|||+ ++++.++.+++.....+
T Consensus 41 ~~dIA~~a-Gvs~gtiY~hF~sKe~L~~a~~~~~~~~~~~ 79 (212)
T PRK15008 41 LEQIAELA-GVSKTNLLYYFPSKEALYIAVLRQILDIWLA 79 (212)
T ss_pred HHHHHHHh-CcCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 34444444 4677889999998 66666666665544433
No 30
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=25.05 E-value=93 Score=27.18 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHH-----HHHhhhCC-------hhHHHHHHHH--HHHHHhhhH--HHhcCCceeEEEEEEe
Q 039444 62 RGKHVTRLVRAVVES-----LVSSICGD-------DAIAEEIYRR--YEIKVTDEI--LEKGRGAFANLLISLV 119 (121)
Q Consensus 62 ~~~~~a~~iRAv~Ep-----ll~~HFG~-------~~I~DeLF~r--~~~~v~~~~--~~~~~~~~~~~~vsL~ 119 (121)
.-+..|+.+|+.++| ||.+|.|- ..|+++|=-. .++++.... .+.+-+..+++||+|+
T Consensus 34 a~~ela~~~rs~yGpng~nK~vvnh~~k~~~TndaatIlrelev~HPaakllv~a~~~q~~~iGDgtnfvvvla 107 (537)
T KOG0362|consen 34 AVRELANVIRSAYGPNGRNKMVVNHLGKTFVTNDAATILRELEVEHPAAKLLVEATQMQEEEIGDGTNFVVVLA 107 (537)
T ss_pred HHHHHHHHHHhhcCCCCcceeeecccceEEEcCChHHHHHHhhccCcHHHHHHHHHHHHHHhhCCCceEeehhH
Confidence 567899999999998 89999993 5688887432 344554442 3345577889888874
No 31
>PRK09480 slmA division inhibitor protein; Provisional
Probab=24.47 E-value=1.2e+02 Score=21.23 Aligned_cols=27 Identities=11% Similarity=-0.005 Sum_probs=14.3
Q ss_pred HHHHHHhhhCC-hhHHHHHHHHHHHHHh
Q 039444 74 VESLVSSICGD-DAIAEEIYRRYEIKVT 100 (121)
Q Consensus 74 ~Epll~~HFG~-~~I~DeLF~r~~~~v~ 100 (121)
..+.|=.|||+ +++..++++++...+.
T Consensus 43 s~gt~Y~~F~~K~~L~~~v~~~~~~~~~ 70 (194)
T PRK09480 43 SEAALYRHFPSKARMFEGLIEFIEESLF 70 (194)
T ss_pred CHhHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34556667766 5555555554444333
No 32
>cd00173 SH2 Src homology 2 domains; Signal transduction, involved in recognition of phosphorylated tyrosine (pTyr). SH2 domains typically bind pTyr-containing ligands via two surface pockets, a pTyr and hydrophobic binding pocket, allowing proteins with SH2 domains to localize to tyrosine phosphorylated sites.
Probab=24.45 E-value=81 Score=19.62 Aligned_cols=26 Identities=23% Similarity=0.502 Sum_probs=19.9
Q ss_pred CccCC--CHHHHHHHHH--hcCceeeeeee
Q 039444 14 PIYTP--YVDEVKQVIE--REGSFDILQLE 39 (121)
Q Consensus 14 P~Y~P--s~eEv~~~Ie--~eGsF~I~~le 39 (121)
|+|.+ +.++.++.++ .+|+|-|-.-+
T Consensus 1 ~w~~g~i~r~~Ae~~L~~~~~G~FLiR~s~ 30 (94)
T cd00173 1 PWYHGPISREEAEELLKKKPDGTFLVRDSE 30 (94)
T ss_pred CccccCCCHHHHHHHHhcCCCceEEEEecC
Confidence 34444 6788899999 89999887766
No 33
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=23.34 E-value=82 Score=18.04 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhhh
Q 039444 88 AEEIYRRYEIKVTDE 102 (121)
Q Consensus 88 ~DeLF~r~~~~v~~~ 102 (121)
+||||.++.+++...
T Consensus 23 Ldel~r~l~~kl~~~ 37 (42)
T PF12221_consen 23 LDELFRKLQDKLGGL 37 (42)
T ss_pred HHHHHHHHHHHHhcc
Confidence 788898888887654
No 34
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=22.73 E-value=37 Score=22.36 Aligned_cols=27 Identities=19% Similarity=0.497 Sum_probs=21.4
Q ss_pred CCccccccCcccCCccCCCHHHHHHHHH
Q 039444 1 GSIEESKLKSSNFPIYTPYVDEVKQVIE 28 (121)
Q Consensus 1 GlI~eeklDSFNlP~Y~Ps~eEv~~~Ie 28 (121)
|.|+++.-|+--.|.|+||. ..|.+|.
T Consensus 27 G~is~~Ecd~Ir~p~~T~sq-qARrLLD 53 (81)
T cd08788 27 GFFSSYDCDEIRLPIFTPSQ-QARRLLD 53 (81)
T ss_pred CCccHhhcchhhcCCCChHH-HHHHHHH
Confidence 78899999999999999984 4555554
No 35
>TIGR03113 exosortase_2 exosortase 2. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. We designate this relatively uncommon proteobacterial type to be type 2. We propose the gene symbol xrtB. Most species encountered so far with xrtB also contain xrtA (TIGR03109).
Probab=22.46 E-value=71 Score=25.30 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHhhhCChhHHHHHHHHH
Q 039444 65 HVTRLVRAVVESLVSSICGDDAIAEEIYRRY 95 (121)
Q Consensus 65 ~~a~~iRAv~Epll~~HFG~~~I~DeLF~r~ 95 (121)
.+||.+|...=.++..|+| .+..+..++-+
T Consensus 215 i~aN~iRv~~l~~l~~~~g-~e~a~g~~H~~ 244 (268)
T TIGR03113 215 FTANVVRVMVLTLVTYHFG-DEAGQGFLHGF 244 (268)
T ss_pred HHHHHHHHHHHHHHHHhcC-HHHHhcccccc
Confidence 6899999999999999999 87776665543
No 36
>PF00876 Innexin: Innexin; InterPro: IPR000990 The pannexin family combines invertebrate gap junction proteins and their vertebrate homologs. These proteins have been named innexins []. Gap junctions are composed of membrane proteins, which form a channel permeable for ions and small molecules connecting cytoplasm of adjacent cells. Although gap junctions provide similar functions in all multicellular organisms, until recently it was believed that vertebrates and invertebrates use unrelated proteins for this purpose. While the connexins family of gap junction proteins is well- characterised in vertebrates, no homologs have been found in invertebrates. In turn, gap junction molecules with no sequence homology to connexins have been identified in insects and nematodes. It has been suggested that these proteins are specific invertebrate gap junctions, and they were thus named innexins (invertebrate analog of connexins) []. As innexin homologs were recently identified in other taxonomic groups including vertebrates, indicating their ubiquitous distribution in the animal kingdom, they were called pannexins (from the Latin pan-all, throughout, and nexus-connection, bond) [, , ]. Genomes of vertebrates carry probably a conserved set of 3 pannexin paralogs (PANX1, PANX2 and PANX3). Invertebrate genomes may contain more than a dozen pannexin (innexin) genes. Vinnexins, viral homologs of pannexins/innexins, were identified in Polydnaviruses that occur in obligate symbiotic associations with parasitoid wasps. It was suggested that virally encoded vinnexin proteins may function to alter gap junction proteins in infected host cells, possibly modifying cell-cell communication during encapsulation responses in parasitized insects [, ]. Structurally pannexins are simillar to connexins. Both types of protein consist of a cytoplasmic N-terminal domain, followed by four transmembrane segments that delimit two extracellular and one cytoplasmic loops; the C- terminal domain is cytoplasmic.; GO: 0005921 gap junction
Probab=22.26 E-value=68 Score=25.93 Aligned_cols=24 Identities=33% Similarity=0.634 Sum_probs=18.7
Q ss_pred HHHHHhhhCC---hhHHHHHHHHHHHH
Q 039444 75 ESLVSSICGD---DAIAEEIYRRYEIK 98 (121)
Q Consensus 75 Epll~~HFG~---~~I~DeLF~r~~~~ 98 (121)
=-||+.|.|. .+++++|+++|.+|
T Consensus 322 L~~i~~n~g~~v~~el~~~L~~~~~~~ 348 (348)
T PF00876_consen 322 LRLIAKNAGDIVARELVEELWERYKEK 348 (348)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHhhC
Confidence 3477788885 78899999998764
No 37
>TIGR01229 rocF_arginase arginase. This model helps resolve arginases from known and putative agmatinases, formiminoglutamases, and other related proteins of unknown specifity. The pathway from arginine to the polyamine putrescine may procede by hydrolysis to remove urea (arginase) followed by decarboxylation (ornithine decarboxylase), or by decarboxylation first (arginine decarboxylase) followed by removal of urea (agmatinase).
Probab=22.21 E-value=2.8e+02 Score=21.81 Aligned_cols=60 Identities=15% Similarity=0.175 Sum_probs=36.9
Q ss_pred cCcccCCccCC----------CHHHHHHHHHhc-CceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHH
Q 039444 8 LKSSNFPIYTP----------YVDEVKQVIERE-GSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVE 75 (121)
Q Consensus 8 lDSFNlP~Y~P----------s~eEv~~~Ie~e-GsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~E 75 (121)
+|+++ |-|+| +..|+..+++.- .+..+--+++.|.+ |. .|.. .....++..|..+..+++
T Consensus 226 iDvlD-ps~aPgv~tp~pgGl~~~e~~~~l~~i~~~~~v~g~DivE~~--P~-~D~~----~~~~Ta~laa~li~~~lg 296 (300)
T TIGR01229 226 VDGLD-PSLAPATGTPVVGGLTFREGLLIMEMLYETGLLTALDVVEVN--PT-LDIK----HVNRTIKTAVEIVRSLLG 296 (300)
T ss_pred ccccC-cccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCEEEEEEEEEC--cc-cccc----cccHHHHHHHHHHHHHhc
Confidence 45555 66777 689999999975 46778888888765 31 1200 012455666666655543
No 38
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=22.15 E-value=1e+02 Score=22.66 Aligned_cols=25 Identities=20% Similarity=0.530 Sum_probs=21.0
Q ss_pred cCCCHHHHHHHHHhcCceeeeeeeee
Q 039444 16 YTPYVDEVKQVIEREGSFDILQLETF 41 (121)
Q Consensus 16 Y~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (121)
..||.+|+++..++.| |++-+++.+
T Consensus 195 ~~~~~~~l~~~l~~aG-f~~~~~~~~ 219 (231)
T TIGR02752 195 DFPGMDELAEMFQEAG-FKDVEVKSY 219 (231)
T ss_pred HcCCHHHHHHHHHHcC-CCeeEEEEc
Confidence 3589999999999999 887777765
No 39
>COG1458 Predicted DNA-binding protein containing PIN domain [General function prediction only]
Probab=21.93 E-value=57 Score=25.20 Aligned_cols=37 Identities=30% Similarity=0.381 Sum_probs=25.6
Q ss_pred ccCCccCC-CH-HHHHHHHHhcCce--eeeeeeeeeeccCc
Q 039444 11 SNFPIYTP-YV-DEVKQVIEREGSF--DILQLETFHVSWLE 47 (121)
Q Consensus 11 FNlP~Y~P-s~-eEv~~~Ie~eGsF--~I~~le~~~~~~~~ 47 (121)
+|+-.|.| |. .|++...+++||= .+-+++++-+...|
T Consensus 45 ~~iscyiPPsVY~El~~fm~r~gc~~e~~~ki~twivkKtP 85 (221)
T COG1458 45 LGISCYIPPSVYRELMGFMERNGCPEEVIAKIETWIVKKTP 85 (221)
T ss_pred cCeEEEeChHHHHHHHHHHHhCCCcHHHHHhhheeeEecCC
Confidence 34455555 33 6999999999997 56778877544445
No 40
>cd04330 RNAP_III_Rpc25_N RNAP_III_Rpc25_N: Rpc25, N-terminal ribonucleoprotein (RNP) domain. Rpc25 is a subunit of eukaryotic RNA polymerase (RNAP) III and is homologous to Rpa43 of eukaryotic RNAP I, Rpb7 of eukaryotic RNAP II, and RpoE of archaeal RNAP. Rpc25 has two domains, an N-terminal RNP domain and a C-terminal oligonucleotide-binding (OB) domain, both of which are thought to bind single-stranded RNA. Rpc25 heterodimerizes with Rpc17 and plays an important role in transcription initiation. RNAP III transcribes diverse structural and catalytic RNAs including 5S ribosomal RNAs, tRNAs, and a small number of snRNAs involved in RNA and protein synthesis.
Probab=21.60 E-value=69 Score=20.47 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=14.4
Q ss_pred hhhCC---hhHHHHHHHHHHHHHhhh
Q 039444 80 SICGD---DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 80 ~HFG~---~~I~DeLF~r~~~~v~~~ 102 (121)
+|||. +.|.++|-++|+.++...
T Consensus 15 ~~fg~~~~~~i~~~L~~ky~gkv~~~ 40 (80)
T cd04330 15 SQFSRPLNDAIEDELNKKYANKVIQN 40 (80)
T ss_pred HHcCcCHHHHHHHHHHHHhCCcEeCC
Confidence 67783 556666666666665543
No 41
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=21.27 E-value=1.3e+02 Score=21.99 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=23.5
Q ss_pred CCccCCCHHHHHHHHHhcCceeeeeeeeee
Q 039444 13 FPIYTPYVDEVKQVIEREGSFDILQLETFH 42 (121)
Q Consensus 13 lP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (121)
.+.|.|+.+++.+.+++.| |++.+.+.+.
T Consensus 118 ~~~~~~s~~~~~~~l~~~G-f~~~~~~~~~ 146 (224)
T smart00828 118 TTSYLVTREEWAELLARNN-LRVVEGVDAS 146 (224)
T ss_pred cccccCCHHHHHHHHHHCC-CeEEEeEECc
Confidence 5678999999999998876 8887766553
No 42
>PRK10668 DNA-binding transcriptional repressor AcrR; Provisional
Probab=21.03 E-value=1.3e+02 Score=21.74 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=20.7
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVT 100 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~ 100 (121)
+..+.|=.|||+ ++++..+++++...+.
T Consensus 43 vs~~tlY~~F~sKe~Ll~~v~~~~~~~~~ 71 (215)
T PRK10668 43 VTRGAIYWHFKNKSDLFSEIWELSESKIG 71 (215)
T ss_pred CChHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 456778899998 8888888877655443
No 43
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=20.81 E-value=71 Score=25.35 Aligned_cols=33 Identities=33% Similarity=0.650 Sum_probs=26.8
Q ss_pred ccCCCHHHHHHHHH---hcCceeeeeeeeeeeccCc
Q 039444 15 IYTPYVDEVKQVIE---REGSFDILQLETFHVSWLE 47 (121)
Q Consensus 15 ~Y~Ps~eEv~~~Ie---~eGsF~I~~le~~~~~~~~ 47 (121)
+|.|+.++|+..++ +-|.=.|+-.|+..-.|+.
T Consensus 193 ~y~P~veQv~kt~~~l~~~g~~~ie~~E~l~R~~~v 228 (256)
T COG2519 193 VYSPTVEQVEKTVEALRERGFVDIEAVETLVRRWEV 228 (256)
T ss_pred EEcCCHHHHHHHHHHHHhcCccchhhheeeeheeee
Confidence 69999999999888 3466678888888777765
No 44
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=20.25 E-value=66 Score=23.63 Aligned_cols=34 Identities=32% Similarity=0.539 Sum_probs=25.6
Q ss_pred ccccccCccc---CCccCCCHHHHHHHHHhcCceeee
Q 039444 3 IEESKLKSSN---FPIYTPYVDEVKQVIEREGSFDIL 36 (121)
Q Consensus 3 I~eeklDSFN---lP~Y~Ps~eEv~~~Ie~eGsF~I~ 36 (121)
+++++++..| .|+|-|..+|+-+-..++|.|...
T Consensus 31 ~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t 67 (185)
T PF03721_consen 31 IDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT 67 (185)
T ss_dssp S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE
T ss_pred CChHHHHHHhhccccccccchhhhhccccccccchhh
Confidence 4567777777 999999999998888878877763
Done!