Query 039444
Match_columns 121
No_of_seqs 101 out of 321
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 16:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m6e_X S-adenosyl-L-methionnin 100.0 2E-31 6.7E-36 215.0 13.4 117 1-121 240-357 (359)
2 2efj_A 3,7-dimethylxanthine me 100.0 2.9E-31 9.9E-36 215.7 12.6 117 1-121 252-378 (384)
3 3b5i_A S-adenosyl-L-methionine 100.0 4.2E-29 1.4E-33 202.2 13.0 113 1-119 258-374 (374)
4 3ccf_A Cyclopropane-fatty-acyl 94.4 0.54 1.8E-05 34.5 10.5 78 10-102 180-257 (279)
5 3hem_A Cyclopropane-fatty-acyl 88.2 5.4 0.00018 29.4 9.9 80 16-114 219-298 (302)
6 3bus_A REBM, methyltransferase 86.8 6.9 0.00024 28.1 9.7 67 15-98 191-257 (273)
7 2yqz_A Hypothetical protein TT 84.5 2.3 7.9E-05 30.3 5.9 71 15-102 171-241 (263)
8 3f4k_A Putative methyltransfer 79.0 14 0.00049 26.0 8.6 84 17-121 173-257 (257)
9 1kpg_A CFA synthase;, cyclopro 78.4 16 0.00056 26.3 9.6 25 16-41 204-228 (287)
10 2p35_A Trans-aconitate 2-methy 74.6 19 0.00067 25.2 8.9 72 14-102 164-236 (259)
11 2lmc_A Bacterial RNA polymeras 68.2 4 0.00014 25.9 2.7 34 6-39 42-78 (84)
12 2fk8_A Methoxy mycolic acid sy 50.6 70 0.0024 23.3 8.4 26 15-41 229-254 (318)
13 2o57_A Putative sarcosine dime 47.3 76 0.0026 22.8 9.3 24 17-41 211-234 (297)
14 3hnr_A Probable methyltransfer 46.5 13 0.00045 25.5 2.7 30 15-45 176-205 (220)
15 3ujc_A Phosphoethanolamine N-m 42.8 82 0.0028 21.8 10.0 70 16-102 182-251 (266)
16 3vjj_A P9-1; 3.00A {Rice black 40.7 15 0.00053 28.8 2.4 31 11-41 287-317 (368)
17 3on4_A Transcriptional regulat 38.3 35 0.0012 22.1 3.7 40 62-102 32-72 (191)
18 2g7s_A Transcriptional regulat 37.4 37 0.0013 22.0 3.7 39 63-102 31-70 (194)
19 4efd_A Aminopeptidase; structu 37.2 33 0.0011 28.8 4.0 61 8-77 62-135 (522)
20 3pas_A TETR family transcripti 36.5 40 0.0014 21.9 3.8 39 63-102 31-70 (195)
21 3kz9_A SMCR; transcriptional r 36.4 41 0.0014 22.0 3.8 30 73-102 49-79 (206)
22 3bqz_B HTH-type transcriptiona 36.1 42 0.0014 21.9 3.8 39 63-102 25-64 (194)
23 2gfn_A HTH-type transcriptiona 36.0 40 0.0014 22.8 3.9 30 73-102 41-71 (209)
24 3dcf_A Transcriptional regulat 35.7 40 0.0014 22.4 3.7 38 64-102 55-93 (218)
25 2v57_A TETR family transcripti 35.6 41 0.0014 21.9 3.7 39 63-102 35-74 (190)
26 1ik9_C DNA ligase IV; DNA END 35.2 30 0.001 18.4 2.4 18 9-29 16-33 (37)
27 3g5l_A Putative S-adenosylmeth 34.9 26 0.00089 24.6 2.8 28 13-41 189-216 (253)
28 2nx4_A Transcriptional regulat 34.6 43 0.0015 22.3 3.7 38 63-101 33-71 (194)
29 3bru_A Regulatory protein, TET 34.1 44 0.0015 22.4 3.7 30 73-102 62-92 (222)
30 2el8_A Signal-transducing adap 34.0 56 0.0019 21.1 4.1 37 3-39 11-52 (118)
31 2rek_A Putative TETR-family tr 33.7 44 0.0015 22.1 3.7 29 73-101 47-76 (199)
32 3e7q_A Transcriptional regulat 33.7 46 0.0016 21.9 3.7 30 73-102 46-76 (215)
33 3frq_A Repressor protein MPHR( 33.5 47 0.0016 21.9 3.8 30 73-102 40-70 (195)
34 3knw_A Putative transcriptiona 33.4 46 0.0016 22.0 3.7 40 62-102 36-76 (212)
35 3nxc_A HTH-type protein SLMA; 32.8 45 0.0015 22.1 3.6 30 73-102 57-87 (212)
36 3b81_A Transcriptional regulat 32.7 45 0.0015 21.9 3.6 40 62-102 33-73 (203)
37 3e8s_A Putative SAM dependent 32.5 29 0.001 23.5 2.6 27 13-40 182-208 (227)
38 3qbm_A TETR transcriptional re 32.5 46 0.0016 21.7 3.6 40 62-102 29-69 (199)
39 2np5_A Transcriptional regulat 32.3 47 0.0016 22.3 3.7 39 63-102 32-71 (203)
40 1pb6_A Hypothetical transcript 32.0 48 0.0016 21.9 3.6 39 63-102 41-80 (212)
41 2qtq_A Transcriptional regulat 32.0 50 0.0017 21.8 3.7 30 73-102 48-78 (213)
42 3kkz_A Uncharacterized protein 31.9 1.3E+02 0.0046 21.1 9.3 25 16-41 172-196 (267)
43 3lhl_A Putative agmatinase; pr 31.1 1.6E+02 0.0056 21.9 7.0 51 19-78 223-275 (287)
44 2o7t_A Transcriptional regulat 31.0 51 0.0018 21.8 3.7 39 63-102 31-70 (199)
45 1jyr_A Growth factor receptor- 30.9 47 0.0016 20.5 3.2 28 12-39 2-34 (96)
46 3bhq_A Transcriptional regulat 30.8 53 0.0018 22.0 3.8 40 62-102 34-74 (211)
47 3f1b_A TETR-like transcription 30.8 56 0.0019 21.3 3.8 30 73-102 46-76 (203)
48 3g7r_A Putative transcriptiona 30.8 50 0.0017 22.4 3.7 30 73-102 67-97 (221)
49 3f0c_A TETR-molecule A, transc 30.7 54 0.0018 21.8 3.7 39 63-102 34-73 (216)
50 1i3z_A EWS/FLI1 activated tran 30.7 32 0.0011 21.4 2.4 28 12-39 2-34 (103)
51 3dpj_A Transcription regulator 30.5 56 0.0019 21.3 3.7 30 73-102 40-70 (194)
52 2q24_A Putative TETR family tr 30.4 52 0.0018 21.7 3.6 29 73-101 46-75 (194)
53 3mnl_A KSTR, transcriptional r 30.4 47 0.0016 21.8 3.4 30 73-102 52-82 (203)
54 3jsj_A Putative TETR-family tr 30.2 51 0.0017 21.5 3.5 30 73-102 40-70 (190)
55 2fd5_A Transcriptional regulat 30.0 41 0.0014 21.9 2.9 39 63-102 30-69 (180)
56 3lhq_A Acrab operon repressor 30.0 55 0.0019 21.6 3.7 39 63-102 37-76 (220)
57 3gzi_A Transcriptional regulat 29.9 53 0.0018 21.8 3.6 30 73-102 49-79 (218)
58 3rd3_A Probable transcriptiona 29.9 46 0.0016 21.6 3.2 40 62-102 32-72 (197)
59 3eup_A Transcriptional regulat 29.7 47 0.0016 21.7 3.3 30 73-102 43-73 (204)
60 3loc_A HTH-type transcriptiona 29.4 58 0.002 21.4 3.7 30 73-102 50-80 (212)
61 3v6g_A Probable transcriptiona 29.2 56 0.0019 22.3 3.7 30 73-102 46-76 (208)
62 2dg8_A Putative TETR-family tr 29.1 55 0.0019 21.6 3.5 30 73-102 41-71 (193)
63 3mvp_A TETR/ACRR transcription 29.1 53 0.0018 21.7 3.4 30 73-102 58-88 (217)
64 3qkx_A Uncharacterized HTH-typ 29.1 61 0.0021 20.8 3.7 40 62-102 30-70 (188)
65 1zk8_A Transcriptional regulat 29.1 50 0.0017 21.4 3.3 30 73-102 40-70 (183)
66 3egq_A TETR family transcripti 29.0 51 0.0017 21.1 3.3 40 62-102 26-66 (170)
67 2qwt_A Transcriptional regulat 28.7 60 0.002 21.6 3.7 28 73-100 44-72 (196)
68 2w53_A Repressor, SMet; antibi 28.6 54 0.0019 22.0 3.5 39 63-102 34-73 (219)
69 3he0_A Transcriptional regulat 28.5 52 0.0018 21.4 3.3 39 63-102 34-73 (196)
70 2g72_A Phenylethanolamine N-me 28.4 59 0.002 23.4 3.8 28 14-42 230-257 (289)
71 3q0w_A HTH-type transcriptiona 28.4 60 0.0021 22.3 3.7 30 73-102 76-106 (236)
72 3lwj_A Putative TETR-family tr 28.1 65 0.0022 21.1 3.8 39 63-102 35-74 (202)
73 3ewt_E Tumor necrosis factor r 27.9 32 0.0011 16.9 1.5 13 19-31 12-24 (25)
74 3e23_A Uncharacterized protein 27.8 65 0.0022 21.8 3.8 34 9-42 150-183 (211)
75 3h2b_A SAM-dependent methyltra 27.7 55 0.0019 22.0 3.4 30 13-43 155-184 (203)
76 3ppb_A Putative TETR family tr 27.6 68 0.0023 20.7 3.7 40 62-102 31-71 (195)
77 3m5g_A Hemagglutinin; influenz 27.6 44 0.0015 26.2 3.1 33 4-36 83-115 (317)
78 4hku_A LMO2814 protein, TETR t 27.2 48 0.0016 21.8 2.9 39 63-102 30-69 (178)
79 2hyt_A TETR-family transcripti 27.1 53 0.0018 21.8 3.2 39 63-102 35-74 (197)
80 2cev_A Protein (arginase); enz 27.1 99 0.0034 23.1 5.0 48 19-75 247-295 (299)
81 3o59_X DNA polymerase II large 27.0 33 0.0011 26.6 2.2 17 14-30 201-217 (300)
82 3col_A Putative transcription 26.7 46 0.0016 21.5 2.7 36 63-99 33-69 (196)
83 2zcm_A Biofilm operon icaabcd 26.6 64 0.0022 21.1 3.5 30 73-102 39-69 (192)
84 3nrg_A TETR family transcripti 26.4 46 0.0016 22.1 2.7 39 63-102 36-75 (217)
85 2gen_A Probable transcriptiona 26.3 76 0.0026 21.0 3.9 38 62-100 29-67 (197)
86 2hku_A A putative transcriptio 26.2 70 0.0024 21.4 3.7 29 73-101 51-80 (215)
87 2gb4_A Thiopurine S-methyltran 26.0 74 0.0025 23.0 4.0 27 14-42 202-228 (252)
88 3vib_A MTRR; helix-turn-helix 25.9 56 0.0019 21.8 3.1 39 63-102 33-72 (210)
89 1x4c_A Splicing factor, argini 25.9 89 0.003 19.1 3.9 29 10-41 20-48 (108)
90 1x9t_B N-terminl peptide of fi 25.6 20 0.00068 17.9 0.5 7 9-16 9-15 (26)
91 3bni_A Putative TETR-family tr 25.6 73 0.0025 21.8 3.7 30 73-102 75-105 (229)
92 3eyk_A Hemagglutinin HA1 chain 25.5 40 0.0014 26.5 2.5 33 3-35 80-112 (323)
93 2fbq_A Probable transcriptiona 25.4 76 0.0026 21.8 3.8 37 62-99 29-66 (235)
94 3crj_A Transcription regulator 25.2 69 0.0024 21.4 3.5 39 63-102 37-76 (199)
95 3s5r_A Transcriptional regulat 25.1 61 0.0021 21.4 3.2 40 62-102 32-72 (216)
96 4htf_A S-adenosylmethionine-de 25.0 68 0.0023 22.9 3.6 30 14-44 206-235 (285)
97 2eh3_A Transcriptional regulat 25.0 73 0.0025 20.7 3.5 38 63-101 25-63 (179)
98 3lcc_A Putative methyl chlorid 25.0 85 0.0029 21.6 4.0 30 12-42 179-208 (235)
99 3hta_A EBRA repressor; TETR fa 24.9 59 0.002 22.1 3.1 30 73-102 60-90 (217)
100 2g3b_A Putative TETR-family tr 24.7 77 0.0026 21.3 3.7 27 73-99 35-62 (208)
101 3g1o_A Transcriptional regulat 24.3 78 0.0027 22.0 3.7 30 73-102 75-105 (255)
102 2ibd_A Possible transcriptiona 24.2 83 0.0028 20.9 3.7 28 73-100 46-74 (204)
103 1ri5_A MRNA capping enzyme; me 24.1 51 0.0017 23.5 2.7 28 14-42 224-251 (298)
104 4aci_A HTH-type transcriptiona 24.1 88 0.003 20.3 3.8 30 73-102 46-76 (191)
105 3rh2_A Hypothetical TETR-like 24.1 71 0.0024 21.3 3.4 39 63-102 26-65 (212)
106 2a14_A Indolethylamine N-methy 23.9 81 0.0028 22.5 3.8 28 14-42 212-239 (263)
107 3anp_C Transcriptional repress 23.6 85 0.0029 20.8 3.7 29 73-101 41-70 (204)
108 3geu_A Intercellular adhesion 23.5 69 0.0023 20.8 3.1 30 73-102 35-65 (189)
109 2hyj_A Putative TETR-family tr 23.4 74 0.0025 21.2 3.4 37 63-100 35-72 (200)
110 2pz9_A Putative regulatory pro 23.1 75 0.0026 21.6 3.4 30 73-102 62-92 (226)
111 3on2_A Probable transcriptiona 22.9 50 0.0017 21.4 2.3 28 74-101 45-73 (199)
112 2id6_A Transcriptional regulat 22.9 85 0.0029 20.8 3.6 29 73-101 37-66 (202)
113 3sm3_A SAM-dependent methyltra 22.7 87 0.003 21.2 3.7 28 15-43 182-209 (235)
114 2oer_A Probable transcriptiona 22.6 88 0.003 21.0 3.7 38 63-101 47-85 (214)
115 2ef5_A Arginase; TTHA1496, str 22.4 1.5E+02 0.005 22.0 5.1 48 19-75 238-286 (290)
116 2yve_A Transcriptional regulat 22.2 93 0.0032 20.4 3.7 39 63-102 27-66 (185)
117 1d4t_A T cell signal transduct 22.0 73 0.0025 19.7 2.9 27 13-39 4-35 (104)
118 1rja_A Tyrosine-protein kinase 21.8 69 0.0024 19.7 2.7 27 13-39 2-34 (100)
119 1wqu_A C-FES, proto-oncogene t 21.7 27 0.00091 22.5 0.7 30 10-39 13-44 (114)
120 1ui5_A A-factor receptor homol 21.6 98 0.0034 20.9 3.7 39 63-102 32-71 (215)
121 3eaz_A Tyrosine-protein kinase 21.6 49 0.0017 20.6 2.0 28 12-39 7-38 (106)
122 2d6y_A Putative TETR family re 21.5 86 0.003 20.9 3.4 40 62-102 30-70 (202)
123 1t33_A Putative transcriptiona 21.5 86 0.003 20.9 3.4 24 73-96 43-67 (224)
124 1r1p_A GRB2-related adaptor pr 21.5 81 0.0028 19.5 3.0 27 13-39 9-39 (100)
125 3s9k_A Tyrosine-protein kinase 21.5 88 0.003 19.7 3.3 26 13-38 9-39 (118)
126 3cwr_A Transcriptional regulat 21.5 41 0.0014 22.0 1.7 30 73-102 49-79 (208)
127 2zcx_A SCO7815, TETR-family tr 21.3 99 0.0034 21.3 3.8 30 73-102 55-85 (231)
128 3e9v_A Protein BTG2; B-cell tr 21.3 54 0.0018 22.0 2.2 36 62-98 9-46 (120)
129 3vp5_A Transcriptional regulat 21.1 1.1E+02 0.0037 20.2 3.8 40 62-102 34-74 (189)
130 2oi8_A Putative regulatory pro 21.0 93 0.0032 21.2 3.6 30 73-102 48-78 (216)
131 3nnr_A Transcriptional regulat 21.0 87 0.003 21.1 3.4 39 63-102 28-67 (228)
132 2dm0_A Tyrosine-protein kinase 20.9 1.2E+02 0.0041 19.4 3.9 28 11-38 14-46 (125)
133 3ccy_A Putative TETR-family tr 20.8 68 0.0023 21.2 2.7 28 73-100 46-74 (203)
134 1gq6_A Proclavaminate amidino 20.4 2.7E+02 0.0094 20.8 6.6 56 19-83 256-311 (313)
135 3him_A Probable transcriptiona 20.3 47 0.0016 21.8 1.8 30 73-102 48-78 (211)
136 2ras_A Transcriptional regulat 20.3 57 0.002 21.7 2.2 28 73-100 43-71 (212)
137 2zb9_A Putative transcriptiona 20.2 82 0.0028 21.0 3.0 27 73-99 55-82 (214)
138 2ekx_A Cytoplasmic tyrosine-pr 20.1 86 0.0029 19.6 2.9 27 12-38 10-41 (110)
139 3bkw_A MLL3908 protein, S-aden 20.1 79 0.0027 21.6 3.0 28 13-41 187-214 (243)
No 1
>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35
Probab=99.97 E-value=2e-31 Score=215.03 Aligned_cols=117 Identities=36% Similarity=0.616 Sum_probs=106.1
Q ss_pred CCccccccCcccCCccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCcc-ccchhhhHHHHHHHHHHHHHHHHH
Q 039444 1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNE-GLDKYARGKHVTRLVRAVVESLVS 79 (121)
Q Consensus 1 GlI~eeklDSFNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~iRAv~Epll~ 79 (121)
|+|++||+|+||+|+|+||++|++++|+++|+|+|+++|+++..|++ .+++.+ ..+....|+.+|+++||++||||.
T Consensus 240 Gli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~~~~~~~--~~~~~d~~~~~~~~g~~~a~~~Ra~~e~ll~ 317 (359)
T 1m6e_X 240 GLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEASEIYWSS--CTKDGDGGGSVEEEGYNVARCMRAVAEPLLL 317 (359)
T ss_dssp TCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEEEEETTC--CSSCTTCCSSTTTTTTHHHHHHHHHHHHHHH
T ss_pred cccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEEeeccCc--ccchhhhhhhhhHhHhHhhhhhhhhcchhhH
Confidence 89999999999999999999999999999999999999999999987 333100 113357899999999999999999
Q ss_pred hhhCChhHHHHHHHHHHHHHhhhHHHhcCCceeEEEEEEeeC
Q 039444 80 SICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVKK 121 (121)
Q Consensus 80 ~HFG~~~I~DeLF~r~~~~v~~~~~~~~~~~~~~~~vsL~rk 121 (121)
+||| ++|||+||+||+++++++ ++.++.++++++++|+||
T Consensus 318 ~hfG-~~i~d~lf~ry~~~~~~~-~~~~~~~~~~~~~~L~k~ 357 (359)
T 1m6e_X 318 DHFG-EAIIEDVFHRYKLLIIER-MSKEKTKFINVIVSLIRK 357 (359)
T ss_dssp HHHC-HHHHHHHHHHHHHHHHHH-HHSSCCEEEEEEEEEEBC
T ss_pred Hhcc-HHHHHHHHHHHHHHHHHH-HhhCCCceEEEEEEEEeC
Confidence 9999 999999999999999999 898899999999999997
No 2
>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*
Probab=99.97 E-value=2.9e-31 Score=215.67 Aligned_cols=117 Identities=40% Similarity=0.678 Sum_probs=105.2
Q ss_pred CCccccccCcccCCccCCCHHHHHHHHHhcCceeeeeeeeeeeccCcccc---CCCcc--c-c----chhhhHHHHHHHH
Q 039444 1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFV---ENDNE--G-L----DKYARGKHVTRLV 70 (121)
Q Consensus 1 GlI~eeklDSFNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~---~~~~~--~-~----~~~~~~~~~a~~i 70 (121)
|+|+++|+|+||+|+|+||++|++++|+++|+|+|+++|+++..|++ . +++.+ . . |....|+.+|+++
T Consensus 252 Gli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~~g~~~a~~i 329 (384)
T 2efj_A 252 GHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLETFNAPYDA--GFSIDDDYQGRSHSPVSCDEHARAAHVASVV 329 (384)
T ss_dssp TSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEEEEEEETTT--TCCC---------CCSHHHHHHHHHHHHHHH
T ss_pred CCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEEEEeecccc--cccccccccccccccccchHhHhHHHhhhhh
Confidence 89999999999999999999999999999999999999999999987 4 32110 0 1 3457899999999
Q ss_pred HHHHHHHHHhhhCChhHHHHHHHHHHHHHhhhHHHhcCCceeEEEEEEeeC
Q 039444 71 RAVVESLVSSICGDDAIAEEIYRRYEIKVTDEILEKGRGAFANLLISLVKK 121 (121)
Q Consensus 71 RAv~Epll~~HFG~~~I~DeLF~r~~~~v~~~~~~~~~~~~~~~~vsL~rk 121 (121)
||++||+|.+||| ++|||+||+||+++++++ ++.++.++++++++|+||
T Consensus 330 Ra~~epll~~hfG-~~i~d~lF~ry~~~~~~~-~~~~~~~~~~~~~~L~k~ 378 (384)
T 2efj_A 330 RSIYEPILASHFG-EAILPDLSHRIAKNAAKV-LRSGKGFYDSVIISLAKK 378 (384)
T ss_dssp HHHHHHHHHHHHC-STTHHHHHHHHHHHHHHH-HHHTCCEEEEEEEEEEEC
T ss_pred HHhhhhhhHHhcc-HHHHHHHHHHHHHHHHHH-HhhCCCceEEEEEEEEEc
Confidence 9999999999999 999999999999999999 998999999999999997
No 3
>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}
Probab=99.96 E-value=4.2e-29 Score=202.25 Aligned_cols=113 Identities=23% Similarity=0.349 Sum_probs=102.1
Q ss_pred CCccccccCcccCCccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHh
Q 039444 1 GSIEESKLKSSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSS 80 (121)
Q Consensus 1 GlI~eeklDSFNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~ 80 (121)
|+|+++++|+||+|+|+||++|++++|+++|+|+|+++|+++.+|++ .++. ..+....|+.+|+++||++||||.+
T Consensus 258 G~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I~~le~~~~~~~~--~~~~--~~~~~~~g~~~a~~~Ra~~e~ll~~ 333 (374)
T 3b5i_A 258 GLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDKLVVYKGGSPL--VVNE--PDDASEVGRAFASSCRSVAGVLVEA 333 (374)
T ss_dssp SSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEEEEEEEEECCCCC--CCSS--TTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcchhhcccCCccccCCCHHHHHHHHHhcCCcEEEEEEEEeecCCc--cccc--cchhHHHHHHHHHHHHHhccchhHh
Confidence 88999999999999999999999999999999999999999999987 3321 2344678999999999999999999
Q ss_pred hhCChhHHHHHHHHHHHHHhhhHHH--hcCCc--eeEEEEEEe
Q 039444 81 ICGDDAIAEEIYRRYEIKVTDEILE--KGRGA--FANLLISLV 119 (121)
Q Consensus 81 HFG~~~I~DeLF~r~~~~v~~~~~~--~~~~~--~~~~~vsL~ 119 (121)
||| ++|||+||+||+++++++ ++ .++++ ++++++||+
T Consensus 334 hfg-~~i~d~lf~ry~~~~~~~-~~~~~~~~~~~~~~~~~~l~ 374 (374)
T 3b5i_A 334 HIG-EELSNKLFSRVESRATSH-AKDVLVNLQFFHIVASLSFT 374 (374)
T ss_dssp TSC-HHHHHHHHHHHHHHHHHT-CHHHHTTCCCEEEEEEEEEC
T ss_pred hcc-HHHHHHHHHHHHHHHHHh-HHHhhhccccceEEEEEEeC
Confidence 999 999999999999999999 76 66777 899999985
No 4
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}
Probab=94.44 E-value=0.54 Score=34.54 Aligned_cols=78 Identities=15% Similarity=0.249 Sum_probs=53.3
Q ss_pred cccCCccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHhhhCChhHHH
Q 039444 10 SSNFPIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAE 89 (121)
Q Consensus 10 SFNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~HFG~~~I~D 89 (121)
.+.-|.+.++.+++++++++.| |++..++.+...+.. . .+...+..++++...+++. ..+ .+-.+
T Consensus 180 ~~~~~~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~---~---------~~~~~~~~~l~~~~~~~~~-~~~-~~~~~ 244 (279)
T 3ccf_A 180 QALNPWYFPSIGEYVNILEKQG-FDVTYAALFNRPTTL---A---------EGEFGMANWIQMFASAFLV-GLT-PDQQV 244 (279)
T ss_dssp GGGCCCCCCCHHHHHHHHHHHT-EEEEEEEEEECCEEC---S---------SGGGHHHHHHHHHCHHHHT-TCC-HHHHH
T ss_pred cCcCceeCCCHHHHHHHHHHcC-CEEEEEEEecccccc---c---------CCHHHHHHHHHHhhHHHhc-cCC-HHHHH
Confidence 3455778899999999999999 999888877544321 1 0122334455555545553 577 88888
Q ss_pred HHHHHHHHHHhhh
Q 039444 90 EIYRRYEIKVTDE 102 (121)
Q Consensus 90 eLF~r~~~~v~~~ 102 (121)
++..++.+.+.++
T Consensus 245 ~~~~~~~~~~~~~ 257 (279)
T 3ccf_A 245 QLIRKVEATLQDK 257 (279)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 8888888877765
No 5
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*
Probab=88.22 E-value=5.4 Score=29.43 Aligned_cols=80 Identities=11% Similarity=0.215 Sum_probs=44.9
Q ss_pred cCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHhhhCChhHHHHHHHHH
Q 039444 16 YTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRY 95 (121)
Q Consensus 16 Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~HFG~~~I~DeLF~r~ 95 (121)
+.||++++.+.+++.| |++..++.+...+. ..-..+...+++-.+. +.+.|| ++..+ +|..|
T Consensus 219 ~~~s~~~~~~~l~~aG-f~~~~~~~~~~~y~--------------~tl~~w~~~~~~~~~~-~~~~~~-~~~~~-~w~~y 280 (302)
T 3hem_A 219 RLPRISQVDYYSSNAG-WKVERYHRIGANYV--------------PTLNAWADALQAHKDE-AIALKG-QETCD-IYMHY 280 (302)
T ss_dssp CCCCHHHHHHHHHHHT-CEEEEEEECGGGHH--------------HHHHHHHHHHHHTHHH-HHHHHC-HHHHH-HHHHH
T ss_pred CCCCHHHHHHHHHhCC-cEEEEEEeCchhHH--------------HHHHHHHHHHHHhHHH-HHHHhC-HHHHH-HHHHH
Confidence 7899999999999988 88888776532211 1122233333333333 344588 65554 45555
Q ss_pred HHHHhhhHHHhcCCceeEE
Q 039444 96 EIKVTDEILEKGRGAFANL 114 (121)
Q Consensus 96 ~~~v~~~~~~~~~~~~~~~ 114 (121)
-.-.+.. .+.......++
T Consensus 281 l~~~~~~-f~~~~~~~~q~ 298 (302)
T 3hem_A 281 LRGCSDL-FRDKYTDVCQF 298 (302)
T ss_dssp HHHHHHH-HHTTSSEEEEE
T ss_pred HHHHHHH-HhCCCCeEEEE
Confidence 4444444 55554444443
No 6
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}
Probab=86.80 E-value=6.9 Score=28.06 Aligned_cols=67 Identities=6% Similarity=0.003 Sum_probs=42.5
Q ss_pred ccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHhhhCChhHHHHHHHH
Q 039444 15 IYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRR 94 (121)
Q Consensus 15 ~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~HFG~~~I~DeLF~r 94 (121)
.+.++++++++++++.| |++.+.+.+...+.+ ....+...+++.... +..++| ++..+.+...
T Consensus 191 ~~~~~~~~~~~~l~~aG-f~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~ 253 (273)
T 3bus_A 191 LSLGGIDEYESDVRQAE-LVVTSTVDISAQARP--------------SLVKTAEAFENARSQ-VEPFMG-AEGLDRMIAT 253 (273)
T ss_dssp CCCCCHHHHHHHHHHTT-CEEEEEEECHHHHTT--------------HHHHHHHHHHHTHHH-HHHHHC-HHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHcC-CeEEEEEECcHhHHH--------------HHHHHHHHHHHhHHH-HHhhcC-HHHHHHHHHH
Confidence 36789999999999999 888777766322111 112223333343333 457799 8888877777
Q ss_pred HHHH
Q 039444 95 YEIK 98 (121)
Q Consensus 95 ~~~~ 98 (121)
+...
T Consensus 254 ~~~~ 257 (273)
T 3bus_A 254 FRGL 257 (273)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6653
No 7
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A
Probab=84.45 E-value=2.3 Score=30.28 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=47.0
Q ss_pred ccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHhhhCChhHHHHHHHH
Q 039444 15 IYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRR 94 (121)
Q Consensus 15 ~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~HFG~~~I~DeLF~r 94 (121)
.+.++.+++++++++.| |++...+... |.. ....+.+...+++.+.+.+ .+.+ ++..+++..+
T Consensus 171 ~~~~~~~~~~~~l~~~G-f~~~~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~ 233 (263)
T 2yqz_A 171 LHAKRLKEVEEALRRLG-LKPRTREVAR--WRE------------ERTPREALEALSERLYSFT-QGLP-EPVHARVMER 233 (263)
T ss_dssp HHHHHHHHHHHHHHHTT-CCCEEEEEEE--EEE------------EECHHHHHHHHHTTCSGGG-SSSC-HHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHcC-CCcceEEEee--eec------------CCCHHHHHHHHHHhhcccc-cCCC-HHHHHHHHHH
Confidence 34568999999999999 8877665442 322 1123444445554444433 5677 8888888888
Q ss_pred HHHHHhhh
Q 039444 95 YEIKVTDE 102 (121)
Q Consensus 95 ~~~~v~~~ 102 (121)
+.+.+.++
T Consensus 234 ~~~~l~~~ 241 (263)
T 2yqz_A 234 LWAWAEAE 241 (263)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887776
No 8
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*
Probab=79.00 E-value=14 Score=25.98 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHhcCceeeeeeeeee-eccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHhhhCChhHHHHHHHHH
Q 039444 17 TPYVDEVKQVIEREGSFDILQLETFH-VSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRY 95 (121)
Q Consensus 17 ~Ps~eEv~~~Ie~eGsF~I~~le~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~HFG~~~I~DeLF~r~ 95 (121)
.++.+++.+++++.| |++.....+. ..|.. + + ....+...+.+...|-+ ....+++-++.
T Consensus 173 ~~~~~~~~~~l~~aG-f~~v~~~~~~~~~w~~----~-~------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 233 (257)
T 3f4k_A 173 ISVIPTCIDKMERAG-YTPTAHFILPENCWTE----H-Y------------FAPQDEVRETFMKEHAG-NKTAMDFMKGQ 233 (257)
T ss_dssp CCBHHHHHHHHHHTT-EEEEEEEECCGGGTCC----C-C------------CHHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHCC-CeEEEEEECChhhHHH----H-H------------HHHHHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence 568999999999998 7776655443 23421 0 0 01133445556667778 77788877777
Q ss_pred HHHHhhhHHHhcCCceeEEEEEEeeC
Q 039444 96 EIKVTDEILEKGRGAFANLLISLVKK 121 (121)
Q Consensus 96 ~~~v~~~~~~~~~~~~~~~~vsL~rk 121 (121)
.+-...+ ......+.-.+++++|+
T Consensus 234 ~~~~~~~--~~~~~~~g~~~~v~~k~ 257 (257)
T 3f4k_A 234 QYERSLY--SKYKDYYGYVFYIGQKR 257 (257)
T ss_dssp HHHHHHH--HHHTTTEEEEEEEEEEC
T ss_pred HHHHHHH--HHhCCccceEEEEEecC
Confidence 7666654 33355566677777775
No 9
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Probab=78.44 E-value=16 Score=26.32 Aligned_cols=25 Identities=16% Similarity=0.444 Sum_probs=20.5
Q ss_pred cCCCHHHHHHHHHhcCceeeeeeeee
Q 039444 16 YTPYVDEVKQVIEREGSFDILQLETF 41 (121)
Q Consensus 16 Y~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (121)
+.||++++++++++.| |++.+.+.+
T Consensus 204 ~~~s~~~~~~~l~~aG-f~~~~~~~~ 228 (287)
T 1kpg_A 204 RLPSIPMVQECASANG-FTVTRVQSL 228 (287)
T ss_dssp CCCCHHHHHHHHHTTT-CEEEEEEEC
T ss_pred CCCCHHHHHHHHHhCC-cEEEEEEeC
Confidence 4579999999999987 888777654
No 10
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Probab=74.64 E-value=19 Score=25.25 Aligned_cols=72 Identities=8% Similarity=0.141 Sum_probs=46.0
Q ss_pred CccCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHH-HHHHHHhhhCChhHHHHHH
Q 039444 14 PIYTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAV-VESLVSSICGDDAIAEEIY 92 (121)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv-~Epll~~HFG~~~I~DeLF 92 (121)
+...++++++++++++.| |+|+..+... .+ + . .+...+...+++. +.+.+ .+++ .+-.+++.
T Consensus 164 ~~~~~~~~~~~~~l~~aG-f~v~~~~~~~-~~-~--~----------~~~~~~~~~l~~~~~~~~~-~~~~-~~~~~~~~ 226 (259)
T 2p35_A 164 RKPLPPPSDYFNALSPKS-SRVDVWHTVY-NH-P--M----------KDADSIVEWVKGTGLRPYL-AAAG-EENREAFL 226 (259)
T ss_dssp -CCCCCHHHHHHHHGGGE-EEEEEEEEEE-EE-E--E----------SCHHHHHHHHTTTTTTHHH-HTTC-GGGHHHHH
T ss_pred ccCCCCHHHHHHHHHhcC-CceEEEEEEe-ee-c--c----------CCchHHhhhhhcCcchHHH-HhCC-HHHHHHHH
Confidence 456689999999999998 6766555321 11 1 1 1234445556554 23443 4678 88888888
Q ss_pred HHHHHHHhhh
Q 039444 93 RRYEIKVTDE 102 (121)
Q Consensus 93 ~r~~~~v~~~ 102 (121)
.++.+.+.++
T Consensus 227 ~~~~~~~~~~ 236 (259)
T 2p35_A 227 ADYTRRIAAA 236 (259)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888887765
No 11
>2lmc_A Bacterial RNA polymerase inhibitor; transferase, transcription; NMR {Enterobacteria phage T7} PDB: 2wnm_A
Probab=68.21 E-value=4 Score=25.90 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=28.3
Q ss_pred cccCcccCCccCCCHHHHHHHHH---hcCceeeeeee
Q 039444 6 SKLKSSNFPIYTPYVDEVKQVIE---REGSFDILQLE 39 (121)
Q Consensus 6 eklDSFNlP~Y~Ps~eEv~~~Ie---~eGsF~I~~le 39 (121)
.+-.||-+|+|+-|.+|--++-| .+--|.+.|+.
T Consensus 42 g~~~s~EVPV~A~sLdEAlE~AE~eYeeaGF~V~RVR 78 (84)
T 2lmc_A 42 SSEHSFEVPIYAETLDEALELAEWQYVPAGFEVTRVR 78 (84)
T ss_dssp CSSCEEEEEECCSSHHHHHHHHHHTTGGGTCEEEEEE
T ss_pred cccceEEEeeecccHHHHHHHHHHHhhhccceEEEec
Confidence 45679999999999999988888 45668888875
No 12
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*
Probab=50.63 E-value=70 Score=23.32 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=20.5
Q ss_pred ccCCCHHHHHHHHHhcCceeeeeeeee
Q 039444 15 IYTPYVDEVKQVIEREGSFDILQLETF 41 (121)
Q Consensus 15 ~Y~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (121)
.+.||++++++++++.| |++...+.+
T Consensus 229 ~~~~s~~~~~~~l~~aG-f~~~~~~~~ 254 (318)
T 2fk8_A 229 GRLPSTEMMVEHGEKAG-FTVPEPLSL 254 (318)
T ss_dssp CCCCCHHHHHHHHHHTT-CBCCCCEEC
T ss_pred CcCCCHHHHHHHHHhCC-CEEEEEEec
Confidence 45689999999999877 777666654
No 13
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18
Probab=47.34 E-value=76 Score=22.77 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=19.7
Q ss_pred CCCHHHHHHHHHhcCceeeeeeeee
Q 039444 17 TPYVDEVKQVIEREGSFDILQLETF 41 (121)
Q Consensus 17 ~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (121)
.++++++++++++.| |++.+.+.+
T Consensus 211 ~~~~~~~~~~l~~aG-f~~~~~~~~ 234 (297)
T 2o57_A 211 MGSLGLYRSLAKECG-LVTLRTFSR 234 (297)
T ss_dssp CCCHHHHHHHHHHTT-EEEEEEEEC
T ss_pred CCCHHHHHHHHHHCC-CeEEEEEEC
Confidence 569999999999998 787776654
No 14
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}
Probab=46.48 E-value=13 Score=25.52 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=24.4
Q ss_pred ccCCCHHHHHHHHHhcCceeeeeeeeeeecc
Q 039444 15 IYTPYVDEVKQVIEREGSFDILQLETFHVSW 45 (121)
Q Consensus 15 ~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~ 45 (121)
.|.|+++++++++++.| |+|...+.....|
T Consensus 176 ~~~~~~~~~~~~l~~aG-f~v~~~~~~~~~w 205 (220)
T 3hnr_A 176 EYYTRIPVMQTIFENNG-FHVTFTRLNHFVW 205 (220)
T ss_dssp SCCCBHHHHHHHHHHTT-EEEEEEECSSSEE
T ss_pred hhcCCHHHHHHHHHHCC-CEEEEeeccceEE
Confidence 47789999999999999 5888887665555
No 15
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Probab=42.82 E-value=82 Score=21.85 Aligned_cols=70 Identities=10% Similarity=0.094 Sum_probs=39.1
Q ss_pred cCCCHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHhhhCChhHHHHHHHHH
Q 039444 16 YTPYVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICGDDAIAEEIYRRY 95 (121)
Q Consensus 16 Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~HFG~~~I~DeLF~r~ 95 (121)
..++.+++++++++.| |++.+.+.+...+. .....+...+++..+. +.+.+| ++..+.+-...
T Consensus 182 ~~~~~~~~~~~l~~~G-f~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~ 244 (266)
T 3ujc_A 182 TLITVEEYADILTACN-FKNVVSKDLSDYWN--------------QLLEVEHKYLHENKEE-FLKLFS-EKKFISLDDGW 244 (266)
T ss_dssp CCCCHHHHHHHHHHTT-CEEEEEEECHHHHH--------------HHHHHHHHHHHHTHHH-HHHHSC-HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHcC-CeEEEEEeCCHHHH--------------HHHHHHHHHHHhCHHH-HHHhcC-HHHHHHHHHHH
Confidence 4679999999999988 66666554422211 1111122222222333 335588 77777766666
Q ss_pred HHHHhhh
Q 039444 96 EIKVTDE 102 (121)
Q Consensus 96 ~~~v~~~ 102 (121)
...+...
T Consensus 245 ~~~~~~~ 251 (266)
T 3ujc_A 245 SRKIKDS 251 (266)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655543
No 16
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=40.67 E-value=15 Score=28.75 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=23.4
Q ss_pred ccCCccCCCHHHHHHHHHhcCceeeeeeeee
Q 039444 11 SNFPIYTPYVDEVKQVIEREGSFDILQLETF 41 (121)
Q Consensus 11 FNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (121)
|-+|--.-.++++++.|.++|.|++-.....
T Consensus 287 fqL~Slistp~~I~e~i~K~GLFk~it~~~~ 317 (368)
T 3vjj_A 287 FQLSSLISTPALIREKIAKEGLFKIITSNTL 317 (368)
T ss_dssp HHCSSCCCCCHHHHHHHHHSCSEEECC----
T ss_pred HHhhhhccChHHHHHHHHhcCceEEEecccc
Confidence 4567777889999999999999998766654
No 17
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=38.34 E-value=35 Score=22.10 Aligned_cols=40 Identities=5% Similarity=0.037 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 62 RGKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 62 ~~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
+-+.+|...- |..+.|=.||++ ++++.++++++...+.+.
T Consensus 32 t~~~IA~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 72 (191)
T 3on4_A 32 SFKDIATAIN-IKTASIHYHFPSKEDLGVAVISWHTDKIAAV 72 (191)
T ss_dssp CHHHHHHHHT-CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC-CCcchhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444554443 567889999998 888888888877766655
No 18
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=37.40 E-value=37 Score=21.98 Aligned_cols=39 Identities=5% Similarity=0.144 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-+.+|...- |..+.|=.||++ ++++.+++.++...+.+.
T Consensus 31 i~~Ia~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 70 (194)
T 2g7s_A 31 YADISQVVG-IRNASIHHHFPSKSDLVCKLVSQYRQEAEAG 70 (194)
T ss_dssp HHHHHHHHC-CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCchHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 334444332 456778889998 777777777766655443
No 19
>4efd_A Aminopeptidase; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei brucei}
Probab=37.19 E-value=33 Score=28.75 Aligned_cols=61 Identities=23% Similarity=0.355 Sum_probs=39.7
Q ss_pred cCcccCCccCCCHHHHHHHHHhcCcee-------------eeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHH
Q 039444 8 LKSSNFPIYTPYVDEVKQVIEREGSFD-------------ILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVV 74 (121)
Q Consensus 8 lDSFNlP~Y~Ps~eEv~~~Ie~eGsF~-------------I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~ 74 (121)
|++ +|+|+|-.+|--+.+..-.+|. ..++-+...+-.. .. .+.+.++..+++.+|++.
T Consensus 62 ~~~--~p~~~~~v~~a~~~v~~~~~~~~l~~~~~~~g~~~~~~v~v~~lP~~~--SR-----hN~p~r~~~i~~~v~~~~ 132 (522)
T 4efd_A 62 VQR--LPFYNPAVAEAIERVKEGGTYGVLVEGLANAAGSKFVRVVVGEVPTKA--SR-----NNCPARPDVVTALVTAAL 132 (522)
T ss_dssp HHT--STTCCHHHHHHHHHCCBTCEEEEEEETCCBTTCCSEEEEEEEEECCCC--CT-----TSCTTCHHHHHHHHHHHG
T ss_pred hhc--CCCCCHHHHHHHHHhhcCCccceeeeehhccCCCCceEEEEEecCCcc--cc-----CCCCCChHHHHHHHHhhc
Confidence 555 9999999998888887777773 2222222222111 11 245678999999999998
Q ss_pred HHH
Q 039444 75 ESL 77 (121)
Q Consensus 75 Epl 77 (121)
.+.
T Consensus 133 ~~~ 135 (522)
T 4efd_A 133 DEV 135 (522)
T ss_dssp GGC
T ss_pred ccc
Confidence 654
No 20
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=36.47 E-value=40 Score=21.85 Aligned_cols=39 Identities=8% Similarity=0.070 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-+.+|...- |..+.|=.||++ ++++.+++.++...+.+.
T Consensus 31 ~~~Ia~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 70 (195)
T 3pas_A 31 VGKIAKAAG-LSPATLYIYYEDKEQLLLATFYYVSDQVIDA 70 (195)
T ss_dssp HHHHHHHHT-SCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCchHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 334444432 456788899998 777777777776655544
No 21
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=36.39 E-value=41 Score=22.04 Aligned_cols=30 Identities=10% Similarity=0.117 Sum_probs=22.6
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.|||+ ++++.+++.++...+.+.
T Consensus 49 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 79 (206)
T 3kz9_A 49 VSVATVFNYFPTREDLVDEVLNHVVRQFSNF 79 (206)
T ss_dssp SCHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 456778899998 788888888777666554
No 22
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=36.14 E-value=42 Score=21.86 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-+.+|.-.- +..+.|=.||++ ++++.+++.++...+.+.
T Consensus 25 i~~Ia~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 64 (194)
T 3bqz_B 25 TGEIVKLSE-SSKGNLYYHFKTKENLFLEILNIEESKWQEQ 64 (194)
T ss_dssp HHHHHHHTT-CCHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCchhHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 334444332 456778899998 777777777776665544
No 23
>2gfn_A HTH-type transcriptional regulator PKSA related P; transcriptional regulato PSI-2, regulatory protein, structural genomics, protein STR initiative; 1.90A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=36.00 E-value=40 Score=22.84 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=23.4
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
+..+.|=.|||+ ++++.++++++...+.+.
T Consensus 41 vs~gtlY~yF~sKe~L~~a~~~~~~~~~~~~ 71 (209)
T 2gfn_A 41 WSTGVLNHYFGSRHELLLAALRRAGDIQGDR 71 (209)
T ss_dssp SCHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 567889999998 888888888777655543
No 24
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=35.75 E-value=40 Score=22.36 Aligned_cols=38 Identities=3% Similarity=0.020 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 64 KHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 64 ~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
+.+|...- |..+.|=.||++ ++++.+++.++...+.+.
T Consensus 55 ~~Ia~~ag-vs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~ 93 (218)
T 3dcf_A 55 DDIADRIG-FTKPAIYYYFKSKEDVLFAIVNSIVDEALER 93 (218)
T ss_dssp HHHHHHHT-CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhC-CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 34444332 456788899998 778888887777665554
No 25
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=35.57 E-value=41 Score=21.93 Aligned_cols=39 Identities=10% Similarity=0.006 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-..+|...- |..+.|=.||++ ++++.++++++...+.+.
T Consensus 35 ~~~Ia~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 74 (190)
T 2v57_A 35 LGDIAAAAG-VGRSTVHRYYPERTDLLRALARHVHDLSNAA 74 (190)
T ss_dssp HHHHHHHHT-CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 334444332 456788899998 788888888777766554
No 26
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=35.17 E-value=30 Score=18.37 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=12.7
Q ss_pred CcccCCccCCCHHHHHHHHHh
Q 039444 9 KSSNFPIYTPYVDEVKQVIER 29 (121)
Q Consensus 9 DSFNlP~Y~Ps~eEv~~~Ie~ 29 (121)
|||--|+ +++|||.+..+
T Consensus 16 DSY~rd~---t~~eLk~il~~ 33 (37)
T 1ik9_C 16 DSYFIDT---DLNQLKEVFSG 33 (37)
T ss_dssp CBSSSCC---CHHHHHHHHHT
T ss_pred ccccCcC---CHHHHHHHHHH
Confidence 4444444 79999998864
No 27
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}
Probab=34.93 E-value=26 Score=24.63 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=23.1
Q ss_pred CCccCCCHHHHHHHHHhcCceeeeeeeee
Q 039444 13 FPIYTPYVDEVKQVIEREGSFDILQLETF 41 (121)
Q Consensus 13 lP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (121)
...|..|.+|+++++++.| |++.+++..
T Consensus 189 ~~~~~~t~~~~~~~l~~aG-F~~~~~~e~ 216 (253)
T 3g5l_A 189 VQKYHRTVTTYIQTLLKNG-FQINSVIEP 216 (253)
T ss_dssp EEEECCCHHHHHHHHHHTT-EEEEEEECC
T ss_pred CccEecCHHHHHHHHHHcC-CeeeeeecC
Confidence 4466779999999999999 888877754
No 28
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=34.63 E-value=43 Score=22.30 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTD 101 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~ 101 (121)
-+.+|...- +..+.|=.||++ ++++..+++++...+.+
T Consensus 33 ~~~IA~~aG-vs~gtlY~yF~sKe~L~~a~~~~~~~~~~~ 71 (194)
T 2nx4_A 33 MRDIATEAG-YTNGALSHYFAGKDEILRTSYEHISEATDR 71 (194)
T ss_dssp HHHHHHHHT-CCHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcchHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 344444332 566888899998 77777777776655443
No 29
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=34.07 E-value=44 Score=22.36 Aligned_cols=30 Identities=7% Similarity=0.049 Sum_probs=22.3
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++..++.++...+.+.
T Consensus 62 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 92 (222)
T 3bru_A 62 VPKGSFYHYFRNKADFGLALIEAYDTYFARL 92 (222)
T ss_dssp CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 456788899998 778888877777665544
No 30
>2el8_A Signal-transducing adaptor protein 2; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction, structural genomics; NMR {Homo sapiens}
Probab=34.00 E-value=56 Score=21.06 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=27.8
Q ss_pred ccccccCcccCCccCC--CHHHHHHHHHh---cCceeeeeee
Q 039444 3 IEESKLKSSNFPIYTP--YVDEVKQVIER---EGSFDILQLE 39 (121)
Q Consensus 3 I~eeklDSFNlP~Y~P--s~eEv~~~Ie~---eGsF~I~~le 39 (121)
..|.+..-=+.|+|.. |.+|.++++.+ +|+|-|-.-+
T Consensus 11 ~~e~~r~~~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S~ 52 (118)
T 2el8_A 11 AKEEARRALETPSCFLKVSRLEAQLLLERYPECGNLLLRPSG 52 (118)
T ss_dssp CSCCCCCCSSSCTTCCCCCHHHHHHHHHHSSTTCSBEEEECC
T ss_pred HHHHhccccCCCceecCCCHHHHHHHHhhCCCCcEEEEeeCC
Confidence 3444555567899987 77899998875 8999997655
No 31
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=33.67 E-value=44 Score=22.11 Aligned_cols=29 Identities=7% Similarity=0.107 Sum_probs=18.2
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTD 101 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~ 101 (121)
|..+.|=.||++ ++++..++.++...+.+
T Consensus 47 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~ 76 (199)
T 2rek_A 47 VGSATLHRHFPSRWGLLQAVFQERVAQLCD 76 (199)
T ss_dssp CCHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 345667778887 66666666665554443
No 32
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=33.66 E-value=46 Score=21.95 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=22.0
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.|||+ ++++.+++.++...+.+.
T Consensus 46 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 76 (215)
T 3e7q_A 46 VSVGLINHHYDGKDALVAEAYLAVTGRVMRL 76 (215)
T ss_dssp CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 456788899998 777777777776655544
No 33
>3frq_A Repressor protein MPHR(A); macrolide antibiotic. repressor, biosensor, erythromycin, STRPTOMYCES, natural products, biosynthesis, DNA-binding; HET: ERY; 1.76A {Escherichia coli} PDB: 3g56_A
Probab=33.45 E-value=47 Score=21.89 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=23.5
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++.++++++...+.+.
T Consensus 40 vs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~ 70 (195)
T 3frq_A 40 LSRAALIQRFTNRDTLLVRMMERGVEQVRHY 70 (195)
T ss_dssp CCHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 456788899998 888888888877766655
No 34
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=33.43 E-value=46 Score=21.99 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 62 RGKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 62 ~~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
+-+.+|... .|..+.|=.||++ ++++..++.++...+.+.
T Consensus 36 ti~~IA~~a-gvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 76 (212)
T 3knw_A 36 GLQEILKTS-GVPKGSFYHYFESKEAFGCELLKHYISDYQIR 76 (212)
T ss_dssp CHHHHHHHH-TCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHh-CCChHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 344455444 2566888899998 788888888777666554
No 35
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=32.78 E-value=45 Score=22.07 Aligned_cols=30 Identities=10% Similarity=0.048 Sum_probs=21.2
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++.+++.++...+.+.
T Consensus 57 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 87 (212)
T 3nxc_A 57 VSEAALYRHFPSKTRMFDSLIEFIEDSLITR 87 (212)
T ss_dssp SCHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 345778889998 777777777766655544
No 36
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=32.75 E-value=45 Score=21.89 Aligned_cols=40 Identities=5% Similarity=0.032 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 62 RGKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 62 ~~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
+-+.+|...- |..+.|=.||++ ++++.+++.++...+.+.
T Consensus 33 s~~~Ia~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 73 (203)
T 3b81_A 33 TLAFIINKLG-ISKGALYHYFSSKEECADAAIENRVAFFSNE 73 (203)
T ss_dssp CHHHHHHHHT-CCHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhC-CCchhHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 456888899998 778888877777665554
No 37
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}
Probab=32.50 E-value=29 Score=23.50 Aligned_cols=27 Identities=15% Similarity=0.378 Sum_probs=22.6
Q ss_pred CCccCCCHHHHHHHHHhcCceeeeeeee
Q 039444 13 FPIYTPYVDEVKQVIEREGSFDILQLET 40 (121)
Q Consensus 13 lP~Y~Ps~eEv~~~Ie~eGsF~I~~le~ 40 (121)
.+.|..|.+++++++++.| |++.+++.
T Consensus 182 ~~~~~~~~~~~~~~l~~aG-f~~~~~~~ 208 (227)
T 3e8s_A 182 MPWYFRTLASWLNALDMAG-LRLVSLQE 208 (227)
T ss_dssp EEEEECCHHHHHHHHHHTT-EEEEEEEC
T ss_pred ceEEEecHHHHHHHHHHcC-CeEEEEec
Confidence 4567789999999999988 88887765
No 38
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=32.47 E-value=46 Score=21.70 Aligned_cols=40 Identities=8% Similarity=0.016 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 62 RGKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 62 ~~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
+-+.+|.-.- |..+.|-.||++ ++++..++.++...+.+.
T Consensus 29 t~~~IA~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 69 (199)
T 3qbm_A 29 AISDIMAATG-LEKGGIYRHFESKEQLALAAFDYAAEKVRER 69 (199)
T ss_dssp CHHHHHHHHT-CCHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC-CCccHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 3444444432 456788899998 778888887777665554
No 39
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.26 E-value=47 Score=22.27 Aligned_cols=39 Identities=15% Similarity=0.053 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-+.+|...- |..+.|=.||++ ++++.++++++...+.+.
T Consensus 32 ~~~IA~~AG-vs~gtlY~~F~sKe~L~~a~~~~~~~~~~~~ 71 (203)
T 2np5_A 32 VREVAKRAG-VSIGAVQHHFSTKDEMFAFALRTLVDKLLAR 71 (203)
T ss_dssp HHHHHHHHT-CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 344444332 567888899998 788888887777665544
No 40
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=31.96 E-value=48 Score=21.90 Aligned_cols=39 Identities=10% Similarity=0.008 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-+.+|.-.- |..+.|=.||++ ++++..++.++...+.+.
T Consensus 41 ~~~Ia~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 80 (212)
T 1pb6_A 41 LEQIAELAG-VSKTNLLYYFPSKEALYIAVLRQILDIWLAP 80 (212)
T ss_dssp HHHHHHHTT-SCHHHHHHHSSSHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHC-CChhHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 344444442 556788899998 888888888877766655
No 41
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=31.96 E-value=50 Score=21.78 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=22.5
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++.+++.++...+.+.
T Consensus 48 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 78 (213)
T 2qtq_A 48 LNSALVKYYFGNKAGLLKALLDRDMENIVKS 78 (213)
T ss_dssp CCHHHHHHHHSSHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhHhHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 456778899998 778888887777766554
No 42
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*
Probab=31.88 E-value=1.3e+02 Score=21.08 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=20.7
Q ss_pred cCCCHHHHHHHHHhcCceeeeeeeee
Q 039444 16 YTPYVDEVKQVIEREGSFDILQLETF 41 (121)
Q Consensus 16 Y~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (121)
..++.+++.+++++.| |++...+.+
T Consensus 172 ~~~~~~~~~~~l~~aG-f~~v~~~~~ 196 (267)
T 3kkz_A 172 EIDTIPNQVAKIHKAG-YLPVATFIL 196 (267)
T ss_dssp TCEEHHHHHHHHHHTT-EEEEEEEEC
T ss_pred CCCCHHHHHHHHHHCC-CEEEEEEEC
Confidence 4679999999999999 888777655
No 43
>3lhl_A Putative agmatinase; protein structure initiative II(PSI II), nysgxrc structural genomics, NEW YORK SGX research center for struc genomics; 2.30A {Clostridium difficile}
Probab=31.14 E-value=1.6e+02 Score=21.90 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=32.6
Q ss_pred CHHHHHHHHHhc--CceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHH
Q 039444 19 YVDEVKQVIERE--GSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLV 78 (121)
Q Consensus 19 s~eEv~~~Ie~e--GsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll 78 (121)
|..|+..+++.= ....|--+.+.|.+ |. .|.+ ...+...|+.++.++..+.
T Consensus 223 t~~e~~~~l~~l~~~~~~vvg~DivE~~--P~-~D~~------~~Ta~laa~li~~~l~~~~ 275 (287)
T 3lhl_A 223 NYREFQEIFKIIKNSNINIVGCDIVELS--PD-YDTT------GVSTVIACKILRELCLIIS 275 (287)
T ss_dssp CHHHHTHHHHHHHTSCCEEEEEEEECBC--GG-GCTT------CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCEEEEEEEEEC--CC-CCCC------ChHHHHHHHHHHHHHHHHH
Confidence 788999999863 33477777777754 31 1211 2467777777777666543
No 44
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=31.02 E-value=51 Score=21.81 Aligned_cols=39 Identities=8% Similarity=-0.131 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-+.+|... .|..+.|=.||++ ++++.++++++...+.+.
T Consensus 31 ~~~IA~~a-gvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~ 70 (199)
T 2o7t_A 31 MENIAEQA-GVGVATLYRNFPDRFTLDMACAQYLFNVVISL 70 (199)
T ss_dssp HHHHHHHH-TCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 33444433 2456788899998 777777777766555443
No 45
>1jyr_A Growth factor receptor-bound protein 2; receptor binding, regulatory, inhibitor, signaling protein-I complex; HET: PTR; 1.55A {Homo sapiens} SCOP: d.93.1.1 PDB: 1jyq_A* 1jyu_A 1qg1_E* 1x0n_A* 2aob_A* 2aoa_A* 3n7y_A* 1tze_E* 1zfp_E* 3mxc_A* 3mxy_A* 1cj1_A*
Probab=30.92 E-value=47 Score=20.49 Aligned_cols=28 Identities=14% Similarity=0.321 Sum_probs=22.1
Q ss_pred cCCccCC--CHHHHHHHHHh---cCceeeeeee
Q 039444 12 NFPIYTP--YVDEVKQVIER---EGSFDILQLE 39 (121)
Q Consensus 12 NlP~Y~P--s~eEv~~~Ie~---eGsF~I~~le 39 (121)
+.|+|.+ |.+|.++++.. +|+|-|-.-+
T Consensus 2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~ 34 (96)
T 1jyr_A 2 SMAWFFGKIPRAKAEEMLSKQRHDGAFLIRESE 34 (96)
T ss_dssp CCTTBCCSCCHHHHHHHHHTCCSTTBEEEEECS
T ss_pred CcceeccCCCHHHHHHHHhcCCCCcEEEEEecC
Confidence 3577876 77899999987 8999997654
No 46
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=30.82 E-value=53 Score=22.00 Aligned_cols=40 Identities=13% Similarity=0.083 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 62 RGKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 62 ~~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
+-..+|...- |..+.|=.||++ ++++.++++++...+.+.
T Consensus 34 s~~~IA~~aG-vsk~tlY~~F~sKe~L~~~~~~~~~~~~~~~ 74 (211)
T 3bhq_A 34 SMEEIATKAG-ASKQTVYKHFTDKETLFGEVVLSTASQVNDI 74 (211)
T ss_dssp CHHHHHHHHT-CCHHHHHHHHCSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC-CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3444444442 567888899998 777777777766655443
No 47
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=30.81 E-value=56 Score=21.31 Aligned_cols=30 Identities=10% Similarity=0.275 Sum_probs=20.9
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++.+++.++...+.+.
T Consensus 46 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 76 (203)
T 3f1b_A 46 ISKPMLYLYYGSKDELFAACIQREGLRFVEA 76 (203)
T ss_dssp SCHHHHHHHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 355677889988 777777777766655444
No 48
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=30.80 E-value=50 Score=22.43 Aligned_cols=30 Identities=7% Similarity=0.071 Sum_probs=22.2
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++.++++++...+.+.
T Consensus 67 vs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~ 97 (221)
T 3g7r_A 67 VTRATLYRHFSGKDDLILAYLDQADRGIRAQ 97 (221)
T ss_dssp CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 456888899998 778877777766655544
No 49
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=30.70 E-value=54 Score=21.77 Aligned_cols=39 Identities=13% Similarity=0.131 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-+.+|... .|..+.|=.||++ ++++.++++++...+.+.
T Consensus 34 i~~Ia~~a-gvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 73 (216)
T 3f0c_A 34 MNEIASDV-GMGKASLYYYFPDKETLFEAVIKKEQNVFFDE 73 (216)
T ss_dssp HHHHHHHH-TCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 34444443 3466788899998 777777777776655544
No 50
>1i3z_A EWS/FLI1 activated transcript 2; SH2 domain phosphotyrosine signal transduction lymphocyte, signaling protein; HET: PTR; 2.15A {Mus musculus} SCOP: d.93.1.1
Probab=30.67 E-value=32 Score=21.37 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=21.9
Q ss_pred cCCccCC--CHHHHHHHHHh---cCceeeeeee
Q 039444 12 NFPIYTP--YVDEVKQVIER---EGSFDILQLE 39 (121)
Q Consensus 12 NlP~Y~P--s~eEv~~~Ie~---eGsF~I~~le 39 (121)
+.|+|.. |-+|.++++.+ +|+|-|-.-+
T Consensus 2 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~ 34 (103)
T 1i3z_A 2 DLPYYHGCLTKRECEALLLKGGVDGNFLIRDSE 34 (103)
T ss_dssp CCTTEESSCCHHHHHHHHHTTCSTTEEEEEECS
T ss_pred CCccccCCCCHHHHHHHHhhcCCCceEEEEeCC
Confidence 4577765 77899999976 8999997654
No 51
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=30.48 E-value=56 Score=21.33 Aligned_cols=30 Identities=13% Similarity=0.057 Sum_probs=20.8
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|-.|||+ ++++..+++++...+.+.
T Consensus 40 vs~~tly~~F~sK~~L~~a~~~~~~~~~~~~ 70 (194)
T 3dpj_A 40 ISRGNFYYHFKTKDEILAEVIRLRLARTAQM 70 (194)
T ss_dssp CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 456778899998 777777776666655544
No 52
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=30.41 E-value=52 Score=21.66 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=18.5
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTD 101 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~ 101 (121)
|..+.|=.||++ ++++.+++.++...+.+
T Consensus 46 vs~~tlY~~F~sK~~L~~~~~~~~~~~~~~ 75 (194)
T 2q24_A 46 VGSGTLYRNFPTREALIEAAYRNEVARLCD 75 (194)
T ss_dssp CCHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 345677788887 66666666666554443
No 53
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=30.39 E-value=47 Score=21.76 Aligned_cols=30 Identities=7% Similarity=-0.051 Sum_probs=23.0
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++..+++++...+.+.
T Consensus 52 vs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~ 82 (203)
T 3mnl_A 52 VAVGTLYRYFPSKVHLLVSALGREFSRIDAK 82 (203)
T ss_dssp CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 456788899998 888888888877766554
No 54
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=30.19 E-value=51 Score=21.51 Aligned_cols=30 Identities=7% Similarity=0.099 Sum_probs=23.0
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|-.|||+ ++++..+++++...+.+.
T Consensus 40 vs~~tly~~F~sK~~L~~~~~~~~~~~~~~~ 70 (190)
T 3jsj_A 40 VSKRSMYQLFESKDELLAASLKERSAAFVAK 70 (190)
T ss_dssp CCHHHHHHHCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 456788899998 788888888877766555
No 55
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=30.01 E-value=41 Score=21.87 Aligned_cols=39 Identities=13% Similarity=-0.021 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-+.+|.-.- +..+.|-.|||+ ++++.+++.++...+.+.
T Consensus 30 ~~~IA~~ag-vs~~tly~~F~sK~~L~~a~~~~~~~~~~~~ 69 (180)
T 2fd5_A 30 VGEVMGAAG-LTVGGFYAHFQSKDALMLEAFEQLLGKRREL 69 (180)
T ss_dssp HHHHHHHTT-CCGGGGGGTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCccHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 334444332 456778889998 777777777776655544
No 56
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=29.99 E-value=55 Score=21.55 Aligned_cols=39 Identities=10% Similarity=0.087 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-+.+|...- |..+.|-.||++ ++++..++.++...+.+.
T Consensus 37 i~~Ia~~ag-vs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~ 76 (220)
T 3lhq_A 37 LAEIANAAG-VTRGAIYWHFKNKSDLFSEIWELSESNIGEL 76 (220)
T ss_dssp HHHHHHHHT-CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCceeehhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 334444332 456788899998 778777777776665443
No 57
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=29.88 E-value=53 Score=21.83 Aligned_cols=30 Identities=10% Similarity=0.189 Sum_probs=22.2
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++..+++++...+.+.
T Consensus 49 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 79 (218)
T 3gzi_A 49 TDPGLIRYYFGSKEKLFSTMIHETAMPVLAQ 79 (218)
T ss_dssp SCTHHHHHHHSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 355778899998 778888887777666554
No 58
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=29.86 E-value=46 Score=21.63 Aligned_cols=40 Identities=5% Similarity=0.015 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 62 RGKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 62 ~~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
+-+.+|...- |..+.|=.||++ ++++..++.++...+.+.
T Consensus 32 t~~~IA~~ag-vs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~ 72 (197)
T 3rd3_A 32 GLNEILQSAG-VPKGSFYHYFKSKEQFGQALLEDYFRVYLAD 72 (197)
T ss_dssp CHHHHHHHHT-CCHHHHTTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC-CChhhHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3444554442 566788899998 777777777766655544
No 59
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=29.68 E-value=47 Score=21.71 Aligned_cols=30 Identities=10% Similarity=0.039 Sum_probs=22.8
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++.+++.++...+.+.
T Consensus 43 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 73 (204)
T 3eup_A 43 LTKGSIYGNFENKEAVAIAAFDYNWGHVKSV 73 (204)
T ss_dssp CCHHHHTTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 456788899998 788888887777665554
No 60
>3loc_A HTH-type transcriptional regulator RUTR; helix-turn-helix, putative transcriptional regulator, dimer, structural genomics, PSI; HET: MSE; 2.50A {Escherichia coli}
Probab=29.41 E-value=58 Score=21.40 Aligned_cols=30 Identities=10% Similarity=-0.047 Sum_probs=21.5
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++..++.++...+.+.
T Consensus 50 vs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~ 80 (212)
T 3loc_A 50 VSKTNLLYYFPSKEALYIAVLRQILDIWLAP 80 (212)
T ss_dssp SCHHHHHHHSSSHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHhhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 456888999998 777777777766555444
No 61
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=29.15 E-value=56 Score=22.27 Aligned_cols=30 Identities=20% Similarity=0.107 Sum_probs=21.4
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++..+++++...+.+.
T Consensus 46 vs~~tlY~~F~sKe~L~~av~~~~~~~~~~~ 76 (208)
T 3v6g_A 46 VPVGSTTYYFNDLDALREAALAHAANASADL 76 (208)
T ss_dssp SCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 466888999998 777777776666554443
No 62
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=29.09 E-value=55 Score=21.56 Aligned_cols=30 Identities=10% Similarity=0.148 Sum_probs=20.8
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.|||+ ++++.++++++...+.+.
T Consensus 41 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 71 (193)
T 2dg8_A 41 VPLGSMTYHFTGIEQLLREAFGRFTDHIVAV 71 (193)
T ss_dssp SCTHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhhheeCCCHHHHHHHHHHHHHHHHHHH
Confidence 456778899998 777777777666655443
No 63
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=29.09 E-value=53 Score=21.71 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=22.2
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|-.|||+ ++++.++++++...+.+.
T Consensus 58 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 88 (217)
T 3mvp_A 58 VSVGTLYAYFASKEDILTALLKRYNDFFLTT 88 (217)
T ss_dssp SCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 456788899998 778888877776665543
No 64
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=29.08 E-value=61 Score=20.83 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 62 RGKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 62 ~~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
+-+.+|...- +..+.|=.||++ ++++.+++.++...+.+.
T Consensus 30 ti~~Ia~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 70 (188)
T 3qkx_A 30 SMLKLAKEAN-VAAGTIYLYFKNKDELLEQFAHRVFSMFMAT 70 (188)
T ss_dssp CHHHHHHHHT-CCHHHHHHHSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC-CCcchHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3444444443 456778889998 777777777776665554
No 65
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=29.08 E-value=50 Score=21.42 Aligned_cols=30 Identities=7% Similarity=-0.044 Sum_probs=20.0
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++.+++.++...+.+.
T Consensus 40 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 70 (183)
T 1zk8_A 40 VRSPSLYNHVKGLQDVRKNLGIYGIKKLHNR 70 (183)
T ss_dssp SCHHHHTTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 455677788887 677777776666555443
No 66
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=29.00 E-value=51 Score=21.13 Aligned_cols=40 Identities=20% Similarity=0.156 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 62 RGKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 62 ~~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
+-..+|.-.- |..+.|=.||++ ++++.++++++...+.+.
T Consensus 26 t~~~Ia~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 66 (170)
T 3egq_A 26 SIEEIAREAK-VSKSLIFYHFESKQKLLEEAVMHAFRKMMEE 66 (170)
T ss_dssp CHHHHHHHHT-SCHHHHHHHCSSHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHhC-CCchhHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 4445554442 567888899998 888888888887766554
No 67
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=28.73 E-value=60 Score=21.58 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=16.8
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVT 100 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~ 100 (121)
|..+.|=.||++ ++++.+++.++...+.
T Consensus 44 vs~~tlY~~F~sK~~L~~~~~~~~~~~~~ 72 (196)
T 2qwt_A 44 VGAGTVYRHFPTKQALVVAVAEDRVRRIV 72 (196)
T ss_dssp SCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 345666777776 6666666665554443
No 68
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=28.62 E-value=54 Score=22.05 Aligned_cols=39 Identities=10% Similarity=0.041 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-..+|...- |..+.|=.||++ ++++..+++++...+.+.
T Consensus 34 ~~~IA~~aG-vskgtlY~~F~sKe~L~~av~~~~~~~~~~~ 73 (219)
T 2w53_A 34 LEMIGARAG-YTRGAVYWHFKNKSEVLAAIVERVHLPFMQE 73 (219)
T ss_dssp HHHHHHHHT-SCHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCchHHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 344444433 466788899998 777777777776655444
No 69
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=28.55 E-value=52 Score=21.41 Aligned_cols=39 Identities=10% Similarity=0.161 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-+.+|...- |..+.|=.|||+ ++++..+++++...+.+.
T Consensus 34 v~~Ia~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 73 (196)
T 3he0_A 34 MQKLANEAG-VAAGTIYRYFSDKEHLLEEVRLNVAKRIASA 73 (196)
T ss_dssp HHHHHHHHT-SCHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcchHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 344444332 456778899998 788888887777766554
No 70
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...
Probab=28.43 E-value=59 Score=23.44 Aligned_cols=28 Identities=21% Similarity=0.482 Sum_probs=23.8
Q ss_pred CccCCCHHHHHHHHHhcCceeeeeeeeee
Q 039444 14 PIYTPYVDEVKQVIEREGSFDILQLETFH 42 (121)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (121)
|.+..+++++++++++.| |++..++.+.
T Consensus 230 ~~~~~~~~~l~~~l~~aG-f~~~~~~~~~ 257 (289)
T 2g72_A 230 TVVPVSEEEVREALVRSG-YKVRDLRTYI 257 (289)
T ss_dssp ECCCCCHHHHHHHHHHTT-EEEEEEEEEE
T ss_pred eeccCCHHHHHHHHHHcC-CeEEEeeEee
Confidence 466789999999999988 8888888775
No 71
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=28.36 E-value=60 Score=22.27 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=22.7
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++.+++.++...+.+.
T Consensus 76 vs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~ 106 (236)
T 3q0w_A 76 ISRPTFYFYFPSKEAVLLTLLDRVVNQADMA 106 (236)
T ss_dssp CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 456788899998 778888877777666554
No 72
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=28.13 E-value=65 Score=21.07 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-..+|... .|..+.|=.||++ ++++..++.++...+.+.
T Consensus 35 ~~~Ia~~a-gvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 74 (202)
T 3lwj_A 35 IRDIIALS-EVGTGTFYNYFVDKEDILKNLLEDFAKQIISS 74 (202)
T ss_dssp HHHHHHHH-CSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCchhHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 33444433 2456788899998 778888887777665554
No 73
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=27.94 E-value=32 Score=16.94 Aligned_cols=13 Identities=23% Similarity=0.552 Sum_probs=10.7
Q ss_pred CHHHHHHHHHhcC
Q 039444 19 YVDEVKQVIEREG 31 (121)
Q Consensus 19 s~eEv~~~Ie~eG 31 (121)
+..||++.++++|
T Consensus 12 ~~~~Vk~fvR~~g 24 (25)
T 3ewt_E 12 TLSQVKGFVRKNG 24 (26)
T ss_pred hHHHHHHHHHHcC
Confidence 4578999999988
No 74
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}
Probab=27.76 E-value=65 Score=21.79 Aligned_cols=34 Identities=9% Similarity=0.079 Sum_probs=26.8
Q ss_pred CcccCCccCCCHHHHHHHHHhcCceeeeeeeeee
Q 039444 9 KSSNFPIYTPYVDEVKQVIEREGSFDILQLETFH 42 (121)
Q Consensus 9 DSFNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (121)
+.+.-.....+.+++++++++.|.|++..++...
T Consensus 150 ~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~ 183 (211)
T 3e23_A 150 DKLARYYNYPSEEWLRARYAEAGTWASVAVESSE 183 (211)
T ss_dssp CTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEE
T ss_pred cccchhccCCCHHHHHHHHHhCCCcEEEEEEecc
Confidence 3444455667999999999999989988888664
No 75
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=27.69 E-value=55 Score=21.96 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=24.7
Q ss_pred CCccCCCHHHHHHHHHhcCceeeeeeeeeee
Q 039444 13 FPIYTPYVDEVKQVIEREGSFDILQLETFHV 43 (121)
Q Consensus 13 lP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~ 43 (121)
.+.+..+.+++++++++.| |++.+++.+..
T Consensus 155 ~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~~ 184 (203)
T 3h2b_A 155 ATAYRWPLPELAQALETAG-FQVTSSHWDPR 184 (203)
T ss_dssp SCEEECCHHHHHHHHHHTT-EEEEEEEECTT
T ss_pred hhhccCCHHHHHHHHHHCC-CcEEEEEecCC
Confidence 3556779999999999998 99998887743
No 76
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=27.64 E-value=68 Score=20.66 Aligned_cols=40 Identities=10% Similarity=0.171 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 62 RGKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 62 ~~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
+-+.+|... .|..+.|=.||++ ++++..+++++...+.+.
T Consensus 31 tv~~Ia~~a-gvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 71 (195)
T 3ppb_A 31 STATIAREA-GVATGTLFHHFPSKEQLLEQLFLGVKQEFADA 71 (195)
T ss_dssp CHHHHHHHH-TCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHh-CCChhHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 344455444 2466788889998 777777777777666555
No 77
>3m5g_A Hemagglutinin; influenza virus, envelope protein, fusion Pro HOST cell membrane, HOST membrane, membrane, transmembrane, viral protein; HET: NAG; 2.60A {Influenza a virus} SCOP: b.19.1.2 PDB: 3m5h_A* 3m5i_A* 3m5j_A* 4dj6_A* 4dj7_A* 4dj8_A* 4fqv_A 1ti8_A*
Probab=27.56 E-value=44 Score=26.20 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=24.9
Q ss_pred cccccCcccCCccCCCHHHHHHHHHhcCceeee
Q 039444 4 EESKLKSSNFPIYTPYVDEVKQVIEREGSFDIL 36 (121)
Q Consensus 4 ~eeklDSFNlP~Y~Ps~eEv~~~Ie~eGsF~I~ 36 (121)
+...-++--.|-..+..||||+++..-|+|+|-
T Consensus 83 Er~~ang~CYPG~~~d~eeLR~l~ss~~~~e~~ 115 (317)
T 3m5g_A 83 ERREGTDICYPGRFTNEESLRQILRRSGGIGKE 115 (317)
T ss_dssp ECTTCBSCSSSCCBTTHHHHHHHHHTSCEEEEE
T ss_pred EccCCCCCcCCCccCCHHHHHHHHhcCCceEec
Confidence 333334445688889999999999999998743
No 78
>4hku_A LMO2814 protein, TETR transcriptional regulator; structural genomics, PSI-biology; 2.30A {Listeria monocytogenes}
Probab=27.19 E-value=48 Score=21.82 Aligned_cols=39 Identities=8% Similarity=0.106 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-..+|.-.- |..+.|=.||++ ++++..+++++...+.+.
T Consensus 30 ~~~IA~~aG-vs~~tlY~~F~sKe~L~~a~~~~~~~~~~~~ 69 (178)
T 4hku_A 30 LYDIASNLN-VTHAALYKHYRNKEDLFQKLALRWLEETSRE 69 (178)
T ss_dssp HHHHHHHTT-SCGGGGGGTCSSHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhC-cCHhHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 344444432 566778889988 777777777776655444
No 79
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=27.14 E-value=53 Score=21.81 Aligned_cols=39 Identities=8% Similarity=0.193 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-..+|...- |..+.|=.||++ ++++.++++++...+.+.
T Consensus 35 ~~~IA~~aG-vs~~tlY~~F~sKe~L~~av~~~~~~~~~~~ 74 (197)
T 2hyt_A 35 MDDLTAQAS-LTRGALYHHFGDKKGLLAAVVEQIDAEMDER 74 (197)
T ss_dssp HHHHHHHHT-CCTTHHHHHHSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 334444433 566778889998 777777776666554443
No 80
>2cev_A Protein (arginase); enzyme, hydrolase, arginine hydrolysis, nitrogen metabolism, manganese metalloenzyme; 2.15A {Bacillus caldovelox} SCOP: c.42.1.1 PDB: 1cev_A 3cev_A* 4cev_A 5cev_A*
Probab=27.08 E-value=99 Score=23.08 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=31.7
Q ss_pred CHHHHHHHHHhcC-ceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHH
Q 039444 19 YVDEVKQVIEREG-SFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVE 75 (121)
Q Consensus 19 s~eEv~~~Ie~eG-sF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~E 75 (121)
|..|+..+++.=+ +..|--+.+.|.+ |. .|.. ...++..|+.++.+++
T Consensus 247 t~~e~~~~l~~l~~~~~vvg~DivE~~--P~-~D~~------~~Ta~laa~li~~~l~ 295 (299)
T 2cev_A 247 TYRESHLAMEMLAEAQIITSAEFVEVN--PI-LDER------NKTASVAVALMGSLFG 295 (299)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEEECCC--GG-GSST------THHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhcCCCEEEEEEEEEC--CC-CCCc------cHHHHHHHHHHHHHHh
Confidence 7899999998754 5677777777754 31 1211 2467777777776654
No 81
>3o59_X DNA polymerase II large subunit; alpha helical structure, transferase; HET: DNA; 2.20A {Pyrococcus horikoshii}
Probab=27.00 E-value=33 Score=26.62 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.7
Q ss_pred CccCCCHHHHHHHHHhc
Q 039444 14 PIYTPYVDEVKQVIERE 30 (121)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~e 30 (121)
=.|.||++|++-+|+..
T Consensus 201 lQY~P~~~Eir~iv~n~ 217 (300)
T 3o59_X 201 LQYHPSPEEVRLAMRNI 217 (300)
T ss_dssp CSSCCCHHHHHHHHHHC
T ss_pred cccCCCHHHHHHHHHcC
Confidence 37999999999999863
No 82
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=26.69 E-value=46 Score=21.55 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHH
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKV 99 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v 99 (121)
-+.+|...- |..+.|=.|||+ ++++.+++.++...+
T Consensus 33 i~~Ia~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 69 (196)
T 3col_A 33 TTKVAKRVG-IAQSNVYLYFKNKQALIDSVYARETNRI 69 (196)
T ss_dssp HHHHHHHHT-SCHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhC-CcHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 334444332 456778889987 777777777776665
No 83
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=26.62 E-value=64 Score=21.11 Aligned_cols=30 Identities=7% Similarity=-0.063 Sum_probs=21.8
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++.++++++...+.+.
T Consensus 39 vs~~tlY~~F~sK~~L~~av~~~~~~~~~~~ 69 (192)
T 2zcm_A 39 IKKASLYYHYDNKEEIYRKSVENCFNYFIDF 69 (192)
T ss_dssp CCHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 456788899998 777777777776655443
No 84
>3nrg_A TETR family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.56A {Chloroflexus aurantiacus}
Probab=26.36 E-value=46 Score=22.10 Aligned_cols=39 Identities=8% Similarity=-0.116 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-+.+|...- |..+.|=.||++ ++++.+++.++...+.+.
T Consensus 36 ~~~IA~~ag-vs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~ 75 (217)
T 3nrg_A 36 INRITERAG-IAKGSFYQYFADKKDCYLYLIQLGIEQKTAF 75 (217)
T ss_dssp HHHHHHHHT-CCTTGGGGTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CcHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 344444433 456778889987 777777777777666555
No 85
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=26.35 E-value=76 Score=21.03 Aligned_cols=38 Identities=11% Similarity=-0.002 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHh
Q 039444 62 RGKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVT 100 (121)
Q Consensus 62 ~~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~ 100 (121)
+-+.+|...- |..+.|=.||++ ++++.++++++...+.
T Consensus 29 s~~~IA~~aG-vs~gtlY~~F~sKe~L~~av~~~~~~~~~ 67 (197)
T 2gen_A 29 TIEMIRDRSG-ASIGSLYHHFGNKERIHGELYLAGIGQYA 67 (197)
T ss_dssp CHHHHHHHHC-CCHHHHHHHTCSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHC-CChHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 3445555442 567788899998 6776666666555443
No 86
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.24 E-value=70 Score=21.39 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=20.7
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTD 101 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~ 101 (121)
|..+.|-.||++ ++++..++.++...+.+
T Consensus 51 vs~~tlY~~F~sK~~L~~a~~~~~~~~~~~ 80 (215)
T 2hku_A 51 AHPNQVTYYYGSKERLFVEVACAAVLRAGK 80 (215)
T ss_dssp CCHHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 455788899998 77777777766655444
No 87
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*
Probab=25.96 E-value=74 Score=23.03 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=22.4
Q ss_pred CccCCCHHHHHHHHHhcCceeeeeeeeee
Q 039444 14 PIYTPYVDEVKQVIEREGSFDILQLETFH 42 (121)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (121)
|-|..+++|+++.... + |+|..++...
T Consensus 202 ~~~~~~~~el~~~l~~-~-f~v~~~~~~~ 228 (252)
T 2gb4_A 202 PPFYVPSAELKRLFGT-K-CSMQCLEEVD 228 (252)
T ss_dssp SSCCCCHHHHHHHHTT-T-EEEEEEEEEE
T ss_pred CCCCCCHHHHHHHhhC-C-eEEEEEeccc
Confidence 5566799999999987 5 9999998765
No 88
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=25.87 E-value=56 Score=21.82 Aligned_cols=39 Identities=5% Similarity=0.123 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-..+|.-. .|..+.|=.||++ ++++.++++++...+.+.
T Consensus 33 ~~~IA~~a-Gvs~~t~Y~~F~sKe~L~~a~~~~~~~~~~~~ 72 (210)
T 3vib_A 33 LNEIAQAA-GVTRDALYWHFKNKEDLFDALFQRICDDIENC 72 (210)
T ss_dssp HHHHHHHH-TSCHHHHHHHCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHH-CcCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444443 2567888899998 778888887776655443
No 89
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=25.86 E-value=89 Score=19.10 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=22.0
Q ss_pred cccCCccCCCHHHHHHHHHhcCceeeeeeeee
Q 039444 10 SSNFPIYTPYVDEVKQVIEREGSFDILQLETF 41 (121)
Q Consensus 10 SFNlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (121)
--||| +.-+.++|+++..+-| .|..+.+.
T Consensus 20 V~nLp-~~~t~~~l~~~F~~~G--~i~~~~i~ 48 (108)
T 1x4c_A 20 VSGLP-PSGSWQDLKDHMREAG--DVCYADVY 48 (108)
T ss_dssp EESCC-SSCCHHHHHHHHGGGS--CEEEEEEE
T ss_pred EeCCC-CCCCHHHHHHHHHhcC--CEeEEEEe
Confidence 34888 6779999999999988 45555543
No 90
>1x9t_B N-terminl peptide of fiber protein; jellyroll domain, insertion domain, anti-parallel beta sheets, virus like particle/peptide complex; HET: C15; 3.50A {Human adenovirus 2}
Probab=25.64 E-value=20 Score=17.92 Aligned_cols=7 Identities=43% Similarity=1.023 Sum_probs=3.8
Q ss_pred CcccCCcc
Q 039444 9 KSSNFPIY 16 (121)
Q Consensus 9 DSFNlP~Y 16 (121)
|.|| |+|
T Consensus 9 ddFn-PVY 15 (26)
T 1x9t_B 9 DTFN-PVY 15 (26)
T ss_pred ccCc-ccc
Confidence 5666 444
No 91
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=25.57 E-value=73 Score=21.77 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=21.1
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++.+++.++...+.+.
T Consensus 75 vs~~t~Y~~F~sKe~Ll~~~~~~~~~~~~~~ 105 (229)
T 3bni_A 75 VPIGSVYRFFGNKRQMADALAQRNLERYAER 105 (229)
T ss_dssp CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 345678889998 777777777776655443
No 92
>3eyk_A Hemagglutinin HA1 chain; inhibitor, envelope protein, fusion protein, glycoprotein, lipoprotein, membrane, palmitate, transmembrane, virion; HET: EYK; 2.50A {Influenza a virus} SCOP: b.19.1.2 PDB: 3eyj_A*
Probab=25.52 E-value=40 Score=26.53 Aligned_cols=33 Identities=18% Similarity=0.472 Sum_probs=25.8
Q ss_pred ccccccCcccCCccCCCHHHHHHHHHhcCceee
Q 039444 3 IEESKLKSSNFPIYTPYVDEVKQVIEREGSFDI 35 (121)
Q Consensus 3 I~eeklDSFNlP~Y~Ps~eEv~~~Ie~eGsF~I 35 (121)
|+...-.+--.|-..+..||||+++..-|+|+|
T Consensus 80 VEr~~a~g~CYPG~~~d~eeLR~l~ss~~s~e~ 112 (323)
T 3eyk_A 80 IERPTAVDTCYPFDVPDYQSLRSILASSGSLEF 112 (323)
T ss_dssp EECTTCCCCSSCEECTTHHHHHHHHHHHTBCCE
T ss_pred EECCCCCCccCCCccCCHHHHHHHHhcCCceee
Confidence 343444455678888999999999999999875
No 93
>2fbq_A Probable transcriptional regulator; PA3006, APC5893, structural genom protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=25.37 E-value=76 Score=21.83 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHH
Q 039444 62 RGKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKV 99 (121)
Q Consensus 62 ~~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v 99 (121)
+-+.+|.-.- |..+.|=.|||+ ++++.++++++...+
T Consensus 29 s~~~IA~~AG-vs~~tlY~hF~sKe~L~~av~~~~~~~~ 66 (235)
T 2fbq_A 29 SLRLITSKAG-VNLAAVNYHFGSKKALIQAVFSRFLGPF 66 (235)
T ss_dssp CHHHHHHHHT-SCHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhC-CCHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4555665543 677889999998 777777777665544
No 94
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=25.23 E-value=69 Score=21.36 Aligned_cols=39 Identities=8% Similarity=0.007 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-+.+|...- |..+.|=.||++ ++++.++++++...+.+.
T Consensus 37 ~~~IA~~ag-vsk~tlY~yF~sKe~L~~a~~~~~~~~~~~~ 76 (199)
T 3crj_A 37 IQRIADEYG-KSTAAVHYYYDTKDDLLAAFLDYLLERFVDS 76 (199)
T ss_dssp HHHHHHHHT-SCHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CChhHHhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 344444442 566888899998 777777777766655444
No 95
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=25.09 E-value=61 Score=21.45 Aligned_cols=40 Identities=13% Similarity=0.133 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 62 RGKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 62 ~~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
+-..+|...- |..+.|=.||++ ++++..+++++...+.+.
T Consensus 32 ti~~Ia~~ag-vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 72 (216)
T 3s5r_A 32 TMAEIAASVG-VNPAMIHYYFKTRDSLLDTIIEERIGRIIDM 72 (216)
T ss_dssp CHHHHHHTTT-CCHHHHHHHCSSHHHHHHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHC-CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 3444444442 566788889998 777777777776666554
No 96
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=25.01 E-value=68 Score=22.92 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=23.8
Q ss_pred CccCCCHHHHHHHHHhcCceeeeeeeeeeec
Q 039444 14 PIYTPYVDEVKQVIEREGSFDILQLETFHVS 44 (121)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~~ 44 (121)
|.+..+++|+++++++.| |+|...+.+...
T Consensus 206 ~~~~~~~~~l~~~l~~aG-f~v~~~~~~~~~ 235 (285)
T 4htf_A 206 PDYPRDPTQVYLWLEEAG-WQIMGKTGVRVF 235 (285)
T ss_dssp CSCCBCHHHHHHHHHHTT-CEEEEEEEESSS
T ss_pred CCCCCCHHHHHHHHHHCC-CceeeeeeEEEe
Confidence 456779999999999998 888877776533
No 97
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=25.00 E-value=73 Score=20.65 Aligned_cols=38 Identities=11% Similarity=0.129 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTD 101 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~ 101 (121)
-..+|...- |..+.|=.||++ ++++.++++++...+.+
T Consensus 25 ~~~Ia~~ag-vskgtlY~~F~sKe~L~~~~~~~~~~~~~~ 63 (179)
T 2eh3_A 25 VEEIVKRAN-LSKGAFYFHFKSKEELITEIIERTHKKIIS 63 (179)
T ss_dssp HHHHHHHHT-CCHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 344444433 567788899998 77877777777665443
No 98
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}
Probab=24.99 E-value=85 Score=21.63 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=24.5
Q ss_pred cCCccCCCHHHHHHHHHhcCceeeeeeeeee
Q 039444 12 NFPIYTPYVDEVKQVIEREGSFDILQLETFH 42 (121)
Q Consensus 12 NlP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (121)
.-|.|..+.+++++++++.| |++..++...
T Consensus 179 ~~~~~~~~~~~~~~~l~~~G-f~~~~~~~~~ 208 (235)
T 3lcc_A 179 GGPPYKVDVSTFEEVLVPIG-FKAVSVEENP 208 (235)
T ss_dssp SCSSCCCCHHHHHHHHGGGT-EEEEEEEECT
T ss_pred CCCCccCCHHHHHHHHHHcC-CeEEEEEecC
Confidence 34667789999999999988 8888887664
No 99
>3hta_A EBRA repressor; TETR family, DNA binding protein, multidrug resistance, MULT binding protein, DNA-binding, transcription; 2.30A {Streptomyces lividans} PDB: 3hth_A* 3hti_A* 3htj_A* 3iuv_A
Probab=24.93 E-value=59 Score=22.10 Aligned_cols=30 Identities=10% Similarity=-0.024 Sum_probs=22.8
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|-.||++ ++++.++++++...+.+.
T Consensus 60 vs~~tlY~~F~sK~~Ll~a~~~~~~~~~~~~ 90 (217)
T 3hta_A 60 VPLGSTTYHFATLDDLMVAALRQANEGFARV 90 (217)
T ss_dssp CCHHHHHHHCSSHHHHHHHHHHHHTHHHHHH
T ss_pred CCcchhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 456788899998 788888888777666554
No 100
>2g3b_A Putative TETR-family transcriptional regulator; transcription regulator, structural genomics, P protein structure initiative; HET: MSE; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=24.71 E-value=77 Score=21.33 Aligned_cols=27 Identities=15% Similarity=0.048 Sum_probs=21.9
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHH
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKV 99 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v 99 (121)
|..+.|=.||++ ++++.++++++...+
T Consensus 35 vskgtlY~hF~sKe~L~~a~~~~~~~~~ 62 (208)
T 2g3b_A 35 VSPGLLYYHFKDRIGLLEAALNYINDRA 62 (208)
T ss_dssp SCHHHHHHHHCSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHhHH
Confidence 567888899998 888888888877766
No 101
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=24.26 E-value=78 Score=21.96 Aligned_cols=30 Identities=7% Similarity=-0.014 Sum_probs=22.3
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++.+++.++...+.+.
T Consensus 75 vs~~tlY~~F~sK~~L~~~v~~~~~~~~~~~ 105 (255)
T 3g1o_A 75 ISRPTFYFYFPSKEAVLLTLLDRVVNQADMA 105 (255)
T ss_dssp CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 356778899998 778877777777666554
No 102
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=24.20 E-value=83 Score=20.86 Aligned_cols=28 Identities=11% Similarity=0.236 Sum_probs=18.2
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVT 100 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~ 100 (121)
|..+.|=.||++ ++++.++++++...+.
T Consensus 46 vs~~tlY~~F~sKe~L~~~~~~~~~~~~~ 74 (204)
T 2ibd_A 46 ILSGSLYHHFDSKESMVDEILRGFLDDLF 74 (204)
T ss_dssp SCHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 456777788887 6666666665554443
No 103
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Probab=24.13 E-value=51 Score=23.47 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=22.4
Q ss_pred CccCCCHHHHHHHHHhcCceeeeeeeeee
Q 039444 14 PIYTPYVDEVKQVIEREGSFDILQLETFH 42 (121)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (121)
|.+..+++|+++++++.| |++.+.+.+.
T Consensus 224 ~~~~~~~~~l~~ll~~aG-f~~v~~~~~~ 251 (298)
T 1ri5_A 224 IEYFVDFTRMVDGFKRLG-LSLVERKGFI 251 (298)
T ss_dssp EEECCCHHHHHHHHHTTT-EEEEEEEEHH
T ss_pred cccccCHHHHHHHHHHcC-CEEEEecCHH
Confidence 346778999999999998 7877776654
No 104
>4aci_A HTH-type transcriptional repressor ACNR; aconitase, citrate, TETR superfamily; HET: CIT; 1.65A {Corynebacterium glutamicum} PDB: 4ac6_A*
Probab=24.10 E-value=88 Score=20.26 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=22.3
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++..+++++...+.+.
T Consensus 46 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 76 (191)
T 4aci_A 46 KSRGAIFHHFGDKENLFLALAREDAARMAEV 76 (191)
T ss_dssp CCHHHHHHHHSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 456788899998 778877777776665554
No 105
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=24.06 E-value=71 Score=21.26 Aligned_cols=39 Identities=13% Similarity=0.196 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-+.+|.-.- |..+.|=.||++ ++++..+++++...+.+.
T Consensus 26 ~~~IA~~Ag-vs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~~ 65 (212)
T 3rh2_A 26 TNHIAAHLD-ISPGNLYYHFRNKEDIIRCIFDQYEQHLLLG 65 (212)
T ss_dssp HHHHHHHHT-CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 344444432 566788899998 888888888887766655
No 106
>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15
Probab=23.90 E-value=81 Score=22.52 Aligned_cols=28 Identities=32% Similarity=0.268 Sum_probs=22.9
Q ss_pred CccCCCHHHHHHHHHhcCceeeeeeeeee
Q 039444 14 PIYTPYVDEVKQVIEREGSFDILQLETFH 42 (121)
Q Consensus 14 P~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~ 42 (121)
+.|.-+.+|+++.+++.| |+|.+++.+.
T Consensus 212 ~~~~~~~~~l~~~l~~aG-F~i~~~~~~~ 239 (263)
T 2a14_A 212 SCVALEKGEVEQAVLDAG-FDIEQLLHSP 239 (263)
T ss_dssp ECCCCCHHHHHHHHHHTT-EEEEEEEEEC
T ss_pred eccccCHHHHHHHHHHCC-CEEEEEeecc
Confidence 445559999999999999 8988888764
No 107
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=23.57 E-value=85 Score=20.76 Aligned_cols=29 Identities=7% Similarity=-0.025 Sum_probs=18.9
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTD 101 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~ 101 (121)
|..+.|=.||++ ++++.++++++...+.+
T Consensus 41 vs~gt~Y~yF~sKe~L~~~~~~~~~~~~~~ 70 (204)
T 3anp_C 41 VSRGTFFNYYPYKEAVLLDYGSQLLAGLRE 70 (204)
T ss_dssp SCHHHHHHHCSSTHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 456677788887 66666666666554443
No 108
>3geu_A Intercellular adhesion protein R; TETR family, intercellular adhesion regulator, IDP00851, DNA repressor, transcription; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=23.50 E-value=69 Score=20.83 Aligned_cols=30 Identities=7% Similarity=-0.053 Sum_probs=20.9
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++..++.++...+.+.
T Consensus 35 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 65 (189)
T 3geu_A 35 IKKASLYYHFDSKKSIYEQSVKCCFDYLNNI 65 (189)
T ss_dssp CCHHHHTTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 456778889998 777777777666655544
No 109
>2hyj_A Putative TETR-family transcriptional regulator; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 2.19A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.43 E-value=74 Score=21.20 Aligned_cols=37 Identities=8% Similarity=0.030 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVT 100 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~ 100 (121)
-..+|...- |..+.|=.|||+ ++++.++++++...+.
T Consensus 35 ~~~IA~~aG-vsk~tlY~hF~sKe~L~~a~~~~~~~~~~ 72 (200)
T 2hyj_A 35 IGRLAEELE-MSKSGVHKHFGTKETLQISTLDKAFVDFW 72 (200)
T ss_dssp HHHHHHHHT-CCHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CChHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 334444332 567888899998 7777777777665443
No 110
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=23.06 E-value=75 Score=21.60 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=22.7
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++.+++.++...+.+.
T Consensus 62 vs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~ 92 (226)
T 2pz9_A 62 TSKERVYAYFRSKEALYAHVAERETTALIEA 92 (226)
T ss_dssp SCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 356788899998 888888888877666554
No 111
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=22.89 E-value=50 Score=21.43 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=14.1
Q ss_pred HHHHHHhhhCC-hhHHHHHHHHHHHHHhh
Q 039444 74 VESLVSSICGD-DAIAEEIYRRYEIKVTD 101 (121)
Q Consensus 74 ~Epll~~HFG~-~~I~DeLF~r~~~~v~~ 101 (121)
..+.|=.|||+ ++++.+++.++...+.+
T Consensus 45 s~~t~Y~~F~sK~~L~~~~~~~~~~~~~~ 73 (199)
T 3on2_A 45 SHAAPSKHFRDRQALLDALAESGFLRLTA 73 (199)
T ss_dssp ----CCCSSSSHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 44566677776 56666666555444443
No 112
>2id6_A Transcriptional regulator, TETR family; 1.75A {Thermotoga maritima} SCOP: a.4.1.9 a.121.1.1 PDB: 3ih2_A 3ih3_A 3ih4_A 1zkg_A* 2iek_A* 1z77_A*
Probab=22.88 E-value=85 Score=20.84 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=19.5
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTD 101 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~ 101 (121)
|..+.|=.||++ ++++.++++++...+.+
T Consensus 37 vskgtlY~yF~sKe~L~~~~~~~~~~~~~~ 66 (202)
T 2id6_A 37 VAKGLIFHYFKNKEELYYQAYMSVTEKLQK 66 (202)
T ss_dssp CCTHHHHHHHSSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 456778889988 66766666666554443
No 113
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}
Probab=22.69 E-value=87 Score=21.17 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=23.0
Q ss_pred ccCCCHHHHHHHHHhcCceeeeeeeeeee
Q 039444 15 IYTPYVDEVKQVIEREGSFDILQLETFHV 43 (121)
Q Consensus 15 ~Y~Ps~eEv~~~Ie~eGsF~I~~le~~~~ 43 (121)
.+..+.+|+++++++.| |++..++....
T Consensus 182 ~~~~~~~~l~~ll~~aG-f~~~~~~~~~~ 209 (235)
T 3sm3_A 182 AHHFTEKELVFLLTDCR-FEIDYFRVKEL 209 (235)
T ss_dssp EECBCHHHHHHHHHTTT-EEEEEEEEEEE
T ss_pred eEeCCHHHHHHHHHHcC-CEEEEEEecce
Confidence 46789999999999987 88888876653
No 114
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=22.58 E-value=88 Score=21.02 Aligned_cols=38 Identities=13% Similarity=-0.027 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTD 101 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~ 101 (121)
-..+|... -|..+.|=.||++ ++++..+++++...+.+
T Consensus 47 ~~~IA~~a-GvskgtlY~yF~sKe~L~~a~~~~~~~~~~~ 85 (214)
T 2oer_A 47 TARVAERA-GVSIGSLYQYFPNKAAILFRLQSDEWRRTTR 85 (214)
T ss_dssp HHHHHHHH-TCCHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCchHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 34455444 2566788899998 77777777766654443
No 115
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on protein structural and function analyses; HET: LYS; 2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Probab=22.35 E-value=1.5e+02 Score=22.01 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=32.0
Q ss_pred CHHHHHHHHHhcC-ceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHH
Q 039444 19 YVDEVKQVIEREG-SFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVE 75 (121)
Q Consensus 19 s~eEv~~~Ie~eG-sF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~E 75 (121)
+..|+..+++.=+ +..|--+.+.+.+ |. .|.. ...++..|+.++.+++
T Consensus 238 t~~e~~~~l~~l~~~~~vvg~DivE~~--P~-~D~~------~~Ta~laa~li~~~l~ 286 (290)
T 2ef5_A 238 TYREAHLLMEILAESGRVQSLDLVEVN--PI-LDER------NRTAEMLVGLALSLLG 286 (290)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEEEECCC--TT-TCST------THHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCEEEEEEEEEC--CC-CCCc------cHHHHHHHHHHHHHHh
Confidence 7899999998754 5677778877755 31 1211 2467777777776654
No 116
>2yve_A Transcriptional regulator; helix-turn-helix, TETR-family; HET: MBT; 1.40A {Corynebacterium glutamicum} PDB: 1v7b_A 2zoy_A 2yvh_A 2dh0_A* 2zoz_A*
Probab=22.25 E-value=93 Score=20.40 Aligned_cols=39 Identities=8% Similarity=-0.085 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-+.+|.-. .+..+.|=.||++ ++++.++++++...+.+.
T Consensus 27 ~~~Ia~~a-gvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 66 (185)
T 2yve_A 27 YDSLAEAT-GLSKSGLIYHFPSRHALLLGMHELLADDWDKE 66 (185)
T ss_dssp HHHHHHHH-CCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCChHHHHHhCcCHHHHHHHHHHHHHHHHHHH
Confidence 34444433 2456788899998 777777777666655443
No 117
>1d4t_A T cell signal transduction molecule SAP; SH2 domain, tyrosine kinase, signal transduction, peptide recognition, signaling protein; 1.10A {Homo sapiens} SCOP: d.93.1.1 PDB: 1d1z_A 1d4w_A* 1m27_A*
Probab=21.96 E-value=73 Score=19.72 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=21.0
Q ss_pred CCccCC--CHHHHHHHHH---hcCceeeeeee
Q 039444 13 FPIYTP--YVDEVKQVIE---REGSFDILQLE 39 (121)
Q Consensus 13 lP~Y~P--s~eEv~~~Ie---~eGsF~I~~le 39 (121)
.|+|.. |.+|.++++. .+|+|-|-.-+
T Consensus 4 ~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S~ 35 (104)
T 1d4t_A 4 VAVYHGKISRETGEKLLLATGLDGSYLLRDSE 35 (104)
T ss_dssp CTTBCCSCCHHHHHHHHHHHCCTTEEEEEECS
T ss_pred CceEccCCCHHHHHHHHHhcCCCCEEEEeeCC
Confidence 467766 6789999887 68999997654
No 118
>1rja_A Tyrosine-protein kinase 6; human protein tyrosine kinase-6 (PTK6/BRK), SRC homology 2(S domain, solution structure, backbone dynamics, transferase; NMR {Homo sapiens} SCOP: d.93.1.1
Probab=21.81 E-value=69 Score=19.73 Aligned_cols=27 Identities=22% Similarity=0.219 Sum_probs=21.6
Q ss_pred CCccCC--CHHHHHHHHHh----cCceeeeeee
Q 039444 13 FPIYTP--YVDEVKQVIER----EGSFDILQLE 39 (121)
Q Consensus 13 lP~Y~P--s~eEv~~~Ie~----eGsF~I~~le 39 (121)
.|+|.. |.+|.++++.. +|+|-|-.-+
T Consensus 2 ~~Wyhg~isR~~Ae~lL~~~g~~~G~FLVR~S~ 34 (100)
T 1rja_A 2 EPWFFGCISRSEAVRRLQAEGNATGAFLIRVSE 34 (100)
T ss_dssp CCCBCTTCCHHHHHHHHSSTTCSSCCEEEEECS
T ss_pred CCcccCCCCHHHHHHHHhccCCCCCEEEEEeCC
Confidence 577775 77899999975 8999997665
No 119
>1wqu_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; SH2 domain, feline sarcoma oncogene, structural genomics; NMR {Homo sapiens} PDB: 2dcr_A
Probab=21.65 E-value=27 Score=22.52 Aligned_cols=30 Identities=17% Similarity=0.185 Sum_probs=23.6
Q ss_pred cccCCccCC--CHHHHHHHHHhcCceeeeeee
Q 039444 10 SSNFPIYTP--YVDEVKQVIEREGSFDILQLE 39 (121)
Q Consensus 10 SFNlP~Y~P--s~eEv~~~Ie~eGsF~I~~le 39 (121)
--+.|+|.. |.+|.++++..+|+|-|-.-+
T Consensus 13 l~~~~WyhG~isR~eAe~lL~~~G~FLVR~S~ 44 (114)
T 1wqu_A 13 LHEQLWYHGAIPRAEVAELLVHSGDFLVRESQ 44 (114)
T ss_dssp GGGCTTEEESCCHHHHHTTCCSTTEEEEEECS
T ss_pred cccCCcEeeCCCHHHHHHHhccCCeEEEEEcC
Confidence 345678865 788999999899999997655
No 120
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=21.60 E-value=98 Score=20.90 Aligned_cols=39 Identities=8% Similarity=-0.033 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-..+|...- |..+.|=.||++ ++++..+++++...+.+.
T Consensus 32 ~~~IA~~AG-vskgtlY~~F~sKe~L~~~~~~~~~~~~~~~ 71 (215)
T 1ui5_A 32 LSEIVAHAG-VTKGALYFHFAAKEDLAHAILEIQSRTSRRL 71 (215)
T ss_dssp HHHHHHHHT-CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCchhhHhhCCCHHHHHHHHHHHHHHHHHHH
Confidence 334444332 456777888887 677777777666554443
No 121
>3eaz_A Tyrosine-protein kinase CSK; SH2, disulfide, oxidized reduced, ATP-binding, cell membrane, cytoplasm, membrane, nucleotide-binding, phosphoprotein; 1.31A {Homo sapiens} PDB: 3eac_A
Probab=21.55 E-value=49 Score=20.65 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=22.1
Q ss_pred cCCccCC--CHHHHHHHHH--hcCceeeeeee
Q 039444 12 NFPIYTP--YVDEVKQVIE--REGSFDILQLE 39 (121)
Q Consensus 12 NlP~Y~P--s~eEv~~~Ie--~eGsF~I~~le 39 (121)
+.|+|.. |.+|.++++. .+|+|-|-.-+
T Consensus 7 ~~~Wyhg~isr~~Ae~lL~~~~~G~FLVR~S~ 38 (106)
T 3eaz_A 7 LMPWFHGKITREQAERLLYPPETGLFLVREST 38 (106)
T ss_dssp GCTTBCCSCCHHHHHHHTCSCCTTEEEEEECT
T ss_pred cCCCcCCCCCHHHHHHHhCCCCCCEEEEEECC
Confidence 4578876 7888888888 78999997654
No 122
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.54 E-value=86 Score=20.90 Aligned_cols=40 Identities=8% Similarity=0.163 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 62 RGKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 62 ~~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
+-+.+|... .|..+.|=.||++ ++++.++++++...+.+.
T Consensus 30 s~~~IA~~a-Gvs~~tiY~~F~sKe~L~~~v~~~~~~~~~~~ 70 (202)
T 2d6y_A 30 RIDRIAAEA-RANKQLIYAYYGNKGELFASVLEKKMLDLAIS 70 (202)
T ss_dssp CHHHHHHHH-TCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHh-CCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 344444444 2566778899998 777777777776655443
No 123
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=21.53 E-value=86 Score=20.90 Aligned_cols=24 Identities=4% Similarity=-0.026 Sum_probs=17.4
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHH
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYE 96 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~ 96 (121)
|..+.|=.|||+ ++++.++++++.
T Consensus 43 vs~~tiY~~F~sK~~L~~~~~~~~~ 67 (224)
T 1t33_A 43 QNIAAITYYFGSKEDLYLACAQWIA 67 (224)
T ss_dssp SCHHHHHHHHSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHhcCCHHHHHHHHHHHHH
Confidence 466888899998 667666666653
No 124
>1r1p_A GRB2-related adaptor protein 2; SH2, GADS, phosphopeptide, peptide binding protein; HET: PTR; 1.80A {Mus musculus} SCOP: d.93.1.1 PDB: 1r1q_A* 1r1s_A*
Probab=21.51 E-value=81 Score=19.50 Aligned_cols=27 Identities=11% Similarity=0.070 Sum_probs=22.0
Q ss_pred CCccCC--CHHHHHHHHHh--cCceeeeeee
Q 039444 13 FPIYTP--YVDEVKQVIER--EGSFDILQLE 39 (121)
Q Consensus 13 lP~Y~P--s~eEv~~~Ie~--eGsF~I~~le 39 (121)
.|+|.+ |.+|.++++.. +|+|-|-.-+
T Consensus 9 ~~Wyhg~isR~~Ae~lL~~~~~G~FLVR~S~ 39 (100)
T 1r1p_A 9 PEWFHEGLSRHQAENLLMGKDIGFFIIRASQ 39 (100)
T ss_dssp TTTSCTTCCHHHHHHHHHTSCTTBEEEEECS
T ss_pred CCccccCCCHHHHHHHhcCCCCCEEEEEecC
Confidence 577876 77899999987 9999997655
No 125
>3s9k_A Tyrosine-protein kinase ITK/TSK; proline isomerization, CIS proline, domain swapped dimer, SH transferase; HET: CIT; 2.35A {Mus musculus} PDB: 2etz_A* 2eu0_A* 1lui_A 1luk_A 1lum_A 1lun_A 2k79_B 2k7a_B
Probab=21.51 E-value=88 Score=19.65 Aligned_cols=26 Identities=19% Similarity=0.409 Sum_probs=20.3
Q ss_pred CCccCC--CHHHHHHHHHh---cCceeeeee
Q 039444 13 FPIYTP--YVDEVKQVIER---EGSFDILQL 38 (121)
Q Consensus 13 lP~Y~P--s~eEv~~~Ie~---eGsF~I~~l 38 (121)
.|+|.. |-+|.++++.. +|+|-|-.-
T Consensus 9 ~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S 39 (118)
T 3s9k_A 9 YEWYNKSISRDKAEKLLLDTGKEGAFMVRDS 39 (118)
T ss_dssp STTBCTTCCHHHHHHHHHHHCCTTCEEEEEC
T ss_pred CceecCCCCHHHHHHHHHhcCCCCeEEEEee
Confidence 578876 68888888876 899998543
No 126
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=21.51 E-value=41 Score=22.05 Aligned_cols=30 Identities=0% Similarity=0.047 Sum_probs=22.7
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++.+++.++...+.+.
T Consensus 49 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 79 (208)
T 3cwr_A 49 IAKKTLYRFASGRADLIGLLVESWIAPIFPG 79 (208)
T ss_dssp CCHHHHHHHCSSHHHHHHHHHHHHHTTTTTS
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 456778899998 888888888877665543
No 127
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=21.26 E-value=99 Score=21.35 Aligned_cols=30 Identities=13% Similarity=-0.036 Sum_probs=21.0
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.|||+ ++++.++++++...+.+.
T Consensus 55 vs~~tlY~~F~sKe~L~~av~~~~~~~~~~~ 85 (231)
T 2zcx_A 55 MHKSALLRYFETREQIFLKITAEGWKEWSAE 85 (231)
T ss_dssp SCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 456788899998 777777777666555443
No 128
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=21.26 E-value=54 Score=21.98 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHH--HHHHHHhhhCChhHHHHHHHHHHHH
Q 039444 62 RGKHVTRLVRAV--VESLVSSICGDDAIAEEIYRRYEIK 98 (121)
Q Consensus 62 ~~~~~a~~iRAv--~Epll~~HFG~~~I~DeLF~r~~~~ 98 (121)
....++++++.- +-.=-...|+ +++..-|++||+.+
T Consensus 9 av~Fl~~~l~~~~~l~~~~v~~F~-~~L~~~L~~~y~~H 46 (120)
T 3e9v_A 9 AVGFLSSLLRTRGCVSEQRLKVFS-GALQEALTEHYKHH 46 (120)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHH-HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHHhcC
Confidence 455666666665 5555567788 88888888888755
No 129
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=21.07 E-value=1.1e+02 Score=20.22 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 62 RGKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 62 ~~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
+-+.+|...- +..+.|=.||++ ++++..+++++...+.+.
T Consensus 34 ti~~Ia~~ag-vs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~ 74 (189)
T 3vp5_A 34 KIMHIVKALD-IPRGSFYQYFEDLKDAYFYVLSQETLEIHDL 74 (189)
T ss_dssp CHHHHHHHHT-CCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhC-CChHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 3445554443 455777799998 777777777766655444
No 130
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=21.05 E-value=93 Score=21.24 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=20.2
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++..+..++...+.+.
T Consensus 48 vs~~t~Y~~F~~K~~L~~a~~~~~~~~~~~~ 78 (216)
T 2oi8_A 48 MSGPALYRYFDGRDELITELIRDAYRSQADS 78 (216)
T ss_dssp CCHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 456788899998 667666666665554443
No 131
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=21.03 E-value=87 Score=21.12 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 63 GKHVTRLVRAVVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 63 ~~~~a~~iRAv~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
-+.+|.-. -|..+.|=.||++ ++++..+++++...+.+.
T Consensus 28 ~~~IA~~A-gvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 67 (228)
T 3nnr_A 28 TNHIAAHL-AISPGNLYYHFRNKSDIIYEIFQEYEKLVDYY 67 (228)
T ss_dssp HHHHHHHH-TCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCccchhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444433 2456788899998 788888888777666554
No 132
>2dm0_A Tyrosine-protein kinase TXK; TEC family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.93 E-value=1.2e+02 Score=19.45 Aligned_cols=28 Identities=14% Similarity=0.373 Sum_probs=22.5
Q ss_pred ccCCccCC--CHHHHHHHHH---hcCceeeeee
Q 039444 11 SNFPIYTP--YVDEVKQVIE---REGSFDILQL 38 (121)
Q Consensus 11 FNlP~Y~P--s~eEv~~~Ie---~eGsF~I~~l 38 (121)
-..|+|.. |.+|.++++. .+|+|-|-.-
T Consensus 14 ~~~~WyhG~isR~eAe~lL~~~~~~G~FLVR~S 46 (125)
T 2dm0_A 14 EIYEWYHRNITRNQAEHLLRQESKEGAFIVRDS 46 (125)
T ss_dssp TTSSSBCCSCCHHHHHHHHHHHCSTTCBCEEEE
T ss_pred ccCCcccCCCCHHHHHHHHhhcCCCCEEEEEec
Confidence 45688887 7799999998 7899999654
No 133
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=20.76 E-value=68 Score=21.24 Aligned_cols=28 Identities=7% Similarity=0.049 Sum_probs=16.5
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVT 100 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~ 100 (121)
|..+.|=.||++ ++++.++++++...+.
T Consensus 46 vs~~t~Y~yF~sKe~L~~~~~~~~~~~~~ 74 (203)
T 3ccy_A 46 CSKSRLYHYFDSKEAVLRDMLTTHVDSLL 74 (203)
T ss_dssp CCGGGGTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred CCcCeeeeeeCCHHHHHHHHHHHHHHHHH
Confidence 345666677776 6666666555554443
No 134
>1gq6_A Proclavaminate amidino hydrolase; clavaminic, PAH, arginase, antibioti; 1.75A {Streptomyces clavuligerus} SCOP: c.42.1.1 PDB: 1gq7_A
Probab=20.39 E-value=2.7e+02 Score=20.77 Aligned_cols=56 Identities=11% Similarity=0.068 Sum_probs=37.0
Q ss_pred CHHHHHHHHHhcCceeeeeeeeeeeccCccccCCCccccchhhhHHHHHHHHHHHHHHHHHhhhC
Q 039444 19 YVDEVKQVIEREGSFDILQLETFHVSWLEGFVENDNEGLDKYARGKHVTRLVRAVVESLVSSICG 83 (121)
Q Consensus 19 s~eEv~~~Ie~eGsF~I~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~iRAv~Epll~~HFG 83 (121)
+..|+..+++.=....|--+.+.|.+ |. .|. ....+...|+.++.++..+..++-|
T Consensus 256 t~~e~~~~l~~l~~~~vvg~DivE~~--P~-~D~------~~~Ta~~aa~li~~~l~~~~~~~~~ 311 (313)
T 1gq6_A 256 LSREVLALLRCVGDLKPVGFDVMEVS--PL-YDH------GGITSILATEIGAELLYQYARAHRT 311 (313)
T ss_dssp CHHHHHHHGGGGGGSEEEEEEEECBC--GG-GCS------TTHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHccCCeEEEEEEEEC--CC-cCC------CChHHHHHHHHHHHHHHHHHHHhcc
Confidence 78999999985433577777777754 31 111 1257888888888888877665544
No 135
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=20.30 E-value=47 Score=21.79 Aligned_cols=30 Identities=10% Similarity=-0.036 Sum_probs=17.8
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHhhh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVTDE 102 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~~~ 102 (121)
|..+.|=.||++ ++++.+++.++...+.+.
T Consensus 48 vs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~ 78 (211)
T 3him_A 48 MSPGAVYPHYKTKESLLYAISLEGHHSVLAA 78 (211)
T ss_dssp CCTTSSTTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCcChhhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 344556677776 666666666665554443
No 136
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=20.27 E-value=57 Score=21.69 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=17.8
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHHh
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKVT 100 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v~ 100 (121)
|..+.|=.||++ ++++.+++.++...+.
T Consensus 43 vs~~t~Y~~F~sK~~L~~~v~~~~~~~~~ 71 (212)
T 2ras_A 43 ISQANLSRYFETREDLMEAIADYWFHPMV 71 (212)
T ss_dssp SCHHHHTTTCSSHHHHHHHHHHHTTHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 445677788887 6666666665554443
No 137
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=20.20 E-value=82 Score=20.96 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=18.5
Q ss_pred HHHHHHHhhhCC-hhHHHHHHHHHHHHH
Q 039444 73 VVESLVSSICGD-DAIAEEIYRRYEIKV 99 (121)
Q Consensus 73 v~Epll~~HFG~-~~I~DeLF~r~~~~v 99 (121)
|..+.|=.||++ ++++.+++.++...+
T Consensus 55 vs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 82 (214)
T 2zb9_A 55 VSKTTLYKWWPSKGALALDGYFHAVEDT 82 (214)
T ss_dssp CCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHhhhc
Confidence 455677788887 777777777665543
No 138
>2ekx_A Cytoplasmic tyrosine-protein kinase BMX; SH2 domain, phosphotyrosine binding domain, protein tyrosine kinase, signal transduction; NMR {Homo sapiens}
Probab=20.09 E-value=86 Score=19.62 Aligned_cols=27 Identities=15% Similarity=0.404 Sum_probs=21.3
Q ss_pred cCCccCC--CHHHHHHHHH---hcCceeeeee
Q 039444 12 NFPIYTP--YVDEVKQVIE---REGSFDILQL 38 (121)
Q Consensus 12 NlP~Y~P--s~eEv~~~Ie---~eGsF~I~~l 38 (121)
+.|+|.. |.+|.++++. .+|+|-|-.-
T Consensus 10 ~~~Wyhg~isR~~Ae~lL~~~~~~G~FLVR~S 41 (110)
T 2ekx_A 10 DYDWFAGNISRSQSEQLLRQKGKEGAFMVRNS 41 (110)
T ss_dssp TSSSBCCSCCHHHHHHHHHHTCCTTEEEEEEC
T ss_pred CCCeecCCCCHHHHHHHHhccCCCceEEEEec
Confidence 3578876 7789999998 6799999654
No 139
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=20.08 E-value=79 Score=21.63 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=22.0
Q ss_pred CCccCCCHHHHHHHHHhcCceeeeeeeee
Q 039444 13 FPIYTPYVDEVKQVIEREGSFDILQLETF 41 (121)
Q Consensus 13 lP~Y~Ps~eEv~~~Ie~eGsF~I~~le~~ 41 (121)
...|..|.+|+++++++.| |++..++..
T Consensus 187 ~~~~~~t~~~~~~~l~~aG-F~~~~~~~~ 214 (243)
T 3bkw_A 187 VVKHHRTVGTTLNALIRSG-FAIEHVEEF 214 (243)
T ss_dssp CCEEECCHHHHHHHHHHTT-CEEEEEEEC
T ss_pred eEEEeccHHHHHHHHHHcC-CEeeeeccC
Confidence 3456679999999999999 777777654
Done!