Query 039445
Match_columns 275
No_of_seqs 173 out of 1252
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 09:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02202 carbonate dehydratase 100.0 6.8E-75 1.5E-79 527.3 24.6 253 13-269 11-268 (284)
2 COG3338 Cah Carbonic anhydrase 100.0 3.3E-70 7.1E-75 468.9 18.4 225 31-266 24-249 (250)
3 cd03124 alpha_CA_prokaryotic_l 100.0 3.8E-69 8.1E-74 473.6 21.1 214 44-264 1-215 (216)
4 cd03121 alpha_CARP_X_XI_like C 100.0 4.5E-69 9.8E-74 484.0 21.7 223 44-268 1-256 (256)
5 cd03119 alpha_CA_I_II_III_XIII 100.0 1.1E-68 2.3E-73 482.4 22.3 227 33-266 3-258 (259)
6 PF00194 Carb_anhydrase: Eukar 100.0 5.2E-67 1.1E-71 471.0 18.3 225 35-266 1-255 (256)
7 cd03126 alpha_CA_XII_XIV Carbo 100.0 1.6E-66 3.5E-71 465.7 21.2 215 44-266 1-248 (249)
8 cd03125 alpha_CA_VI Carbonic a 100.0 6.8E-66 1.5E-70 461.6 21.3 217 44-266 1-247 (249)
9 cd03122 alpha_CARP_receptor_li 100.0 8.8E-66 1.9E-70 462.0 21.3 217 44-264 1-252 (253)
10 cd03123 alpha_CA_VI_IX_XII_XIV 100.0 3E-65 6.6E-70 457.2 21.1 217 44-266 1-247 (248)
11 cd03150 alpha_CA_IX Carbonic a 100.0 3.1E-65 6.8E-70 456.8 20.7 218 44-267 1-246 (247)
12 cd03149 alpha_CA_VII Carbonic 100.0 3E-64 6.4E-69 447.8 20.5 205 61-266 1-235 (236)
13 cd03118 alpha_CA_V Carbonic an 100.0 4.3E-64 9.2E-69 446.8 20.7 205 61-266 1-235 (236)
14 cd03120 alpha_CARP_VIII Carbon 100.0 6.8E-64 1.5E-68 450.4 21.7 214 46-266 2-255 (256)
15 KOG0382 Carbonic anhydrase [Ge 100.0 1.1E-63 2.3E-68 447.8 20.2 229 33-267 3-261 (262)
16 PLN02179 carbonic anhydrase 100.0 1E-63 2.2E-68 442.7 19.1 221 8-232 9-230 (235)
17 cd03117 alpha_CA_IV_XV_like Ca 100.0 3.2E-62 7E-67 434.3 19.6 201 61-265 1-234 (234)
18 cd00326 alpha_CA Carbonic anhy 100.0 2.6E-61 5.7E-66 426.8 20.0 203 61-264 1-227 (227)
19 PF09211 DUF1958: Domain of un 34.9 9.7 0.00021 27.2 -0.6 16 130-145 8-23 (65)
20 PF06594 HCBP_related: Haemoly 24.9 1.3E+02 0.0027 19.1 3.4 13 118-130 24-36 (43)
21 PHA02614 Major capsid protein 23.7 1E+02 0.0023 29.1 3.9 41 201-241 213-267 (363)
22 KOG3110 Riboflavin kinase [Coe 20.6 1.6E+02 0.0034 24.3 3.8 42 135-177 79-126 (153)
23 PF01542 HCV_core: Hepatitis C 20.6 83 0.0018 22.7 2.0 18 8-25 57-74 (75)
No 1
>PLN02202 carbonate dehydratase
Probab=100.00 E-value=6.8e-75 Score=527.34 Aligned_cols=253 Identities=40% Similarity=0.768 Sum_probs=216.9
Q ss_pred HHHHHHHhcCccccccCCCCCCcccCCCCCCCCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCceeeeeccce
Q 039445 13 FFLVLLLLSCPAVSQEVDDEKEFNYEEEGQRGPSKWGELHKEWSACKKGTMQSPIDLLNERVQVVSHLGRLKRSYKPSYA 92 (275)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~ 92 (275)
+++++++|+++..++ ..+.+|+|. +.+||++|+.++++|..|++|++||||||.+..+.....+.+|.++|.....
T Consensus 11 ~~~~~~~~~~~~~~~--~~~~~w~Y~--~~~GP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~~~~~~~ 86 (284)
T PLN02202 11 FFAIALICIAPADAQ--TEGVVFGYK--GKNGPNQWGHLNPHFTKCAVGKLQSPIDIQRRQIFYNHKLESIHRDYYFTNA 86 (284)
T ss_pred HHHHHHHHHHhhhcc--cCCCCcCCC--CCCChhhhhhcCcchhhccCCCccCCEeecCCccccCCCCCceeeeccCCce
Confidence 555555555543333 244689994 6789999999999999999999999999998766556777888888876778
Q ss_pred EEEecCceeEEEeeCCCceEEEcCeEEEeeeeEecCCCCCccccccccceeeeeeecCCcceEEEEEEEeeCCCCchhHH
Q 039445 93 TLKNRGHDMMLQWHGGAGTLLINGTEYVLKQCHWHSPSEHTIDGERFALEAHMVHESQDGKIAVVGIMYKIGRPDSLLAS 172 (275)
Q Consensus 93 ~l~N~G~tv~v~~~~~~~~~~~~g~~Y~l~q~HFH~gSEHtidG~~y~~E~HiVh~~~~~~laVl~v~~~~~~~n~~l~~ 172 (275)
++.|+||++++.+.++.+.+.++|.+|.|.||||||||||+|||++|||||||||++.+|++|||||||++|..|++++.
T Consensus 87 ~l~N~Ghtv~v~~~~~~~~~~~~g~~Y~L~QfHFH~gSEH~idG~~yp~E~H~VH~~~~g~laVlgv~~~~g~~n~~l~~ 166 (284)
T PLN02202 87 TLVNHVCNVAMFFGEGAGDVIIDNKNYTLLQMHWHTPSEHHLHGVQYAAELHMVHQAKDGSFAVVASLFKIGTEEPFLSQ 166 (284)
T ss_pred EEEECCccEEEEEcCCCCeeEECCcEEEEEEEEecCCcccEECCeeCCeEEEEEEEcCCCCEEEEEEEEeccCCChHHHH
Confidence 99999999999986555678899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhcC--CCc---eEEecccCCCCcCCCCCceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccCC
Q 039445 173 ISDHLRQIAGS--NER---ETVVGVIDPRGIKLGSRKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHDD 247 (275)
Q Consensus 173 i~~~l~~i~~~--~~~---~~~i~~~~l~~L~~~~~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~~ 247 (275)
+++.+..+... .+. ...+..+++..|+|...+||+|.||||||||+|+|+|+||++|++||.+||++||++....
T Consensus 167 i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~IS~~Ql~~fr~~~~~~ 246 (284)
T PLN02202 167 MKDKLVKLKEERFKGNHTAQVEVGKIDTRHIERKTRKYFRYIGSLTTPPCSENVSWTILGKVRSMSKEQVELLRSPLDKS 246 (284)
T ss_pred HHHHHHHhhcccccCcccccccccccCHHHhCccccceEEEeccccCCCCCCceEEEEeCceEEcCHHHHHHHHHhhhcc
Confidence 99988877531 121 1223468888888888899999999999999999999999999999999999999987655
Q ss_pred CCCCCCCCCCCCCCeEEEeCCC
Q 039445 248 SGTNARPQQPINLRTIKLYRPD 269 (275)
Q Consensus 248 ~~~N~Rp~Qpln~R~V~~~~~~ 269 (275)
+.+|+||+||||||.|+++.+.
T Consensus 247 l~~N~RpvQplngR~V~~~~~~ 268 (284)
T PLN02202 247 FKNNSRPCQPLNGRRVEMFHDH 268 (284)
T ss_pred cCCCCCCCCCCCCCEEEEecCe
Confidence 7799999999999999988653
No 2
>COG3338 Cah Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-70 Score=468.86 Aligned_cols=225 Identities=38% Similarity=0.693 Sum_probs=202.4
Q ss_pred CCCCcccCCCCCCCCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCceeeeeccceEEEecCceeEEEeeCCCc
Q 039445 31 DEKEFNYEEEGQRGPSKWGELHKEWSACKKGTMQSPIDLLNERVQVVSHLGRLKRSYKPSYATLKNRGHDMMLQWHGGAG 110 (275)
Q Consensus 31 ~~~~w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~l~N~G~tv~v~~~~~~~ 110 (275)
.+..|+|. |..||+.|+.|.+++..|+.|++||||||..... ...+.++.++|.++..+|.|+|||+++.+.++..
T Consensus 24 ~~~~WgY~--g~~GPEhWg~L~~df~~C~~Gk~QSPIdI~~~~~--~~~~~~l~~~Y~~s~~~i~nnghTiqv~~~~~~n 99 (250)
T COG3338 24 AEVHWGYT--GKEGPEHWGELSPDFEACAEGKNQSPIDIEHAVD--VQDKPPLQLNYQPSAVTIKNNGHTIQVNFEPGSN 99 (250)
T ss_pred cccccccc--CCcCchhhhhcCchhhHhhccccCCCccHHHhee--cccccchheeeccCceEEEecCcEEEEeccCCCc
Confidence 34899994 6779999999999999999999999999976432 2245568889988999999999999999987766
Q ss_pred eEEEcCeEEEeeeeEecCCCCCccccccccceeeeeeecCCcceEEEEEEEeeCCCCchhHHHHHHHhhhhcCCCceEEe
Q 039445 111 TLLINGTEYVLKQCHWHSPSEHTIDGERFALEAHMVHESQDGKIAVVGIMYKIGRPDSLLASISDHLRQIAGSNERETVV 190 (275)
Q Consensus 111 ~~~~~g~~Y~l~q~HFH~gSEHtidG~~y~~E~HiVh~~~~~~laVl~v~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~i 190 (275)
.+.++|+.|.|.|||||.||||.|||+.||||+||||.+.+|.|+|+|||++.|..|+.|..|.+.++.... .+..+
T Consensus 100 ~l~~~gk~y~L~qfHFH~PsEhlv~Gk~~pmEaHFVHkd~~g~L~Vl~v~~~~g~eN~~l~~l~~~fP~~~g---e~~~l 176 (250)
T COG3338 100 HLRYDGKTYQLVQFHFHAPSEHLVDGKSFPMEAHFVHKDAKGTLAVLAVLLQAGAENPELAPLWEGFPQKPG---EEETL 176 (250)
T ss_pred ceeecCcEEEEEEEEecCchHHhhccccccceeeeeecCCCCCEEEEEEeeecCCCCcchhHHHHhcccccc---cccce
Confidence 889999999999999999999999999999999999999999999999999999999999999998876532 23224
Q ss_pred -cccCCCCcCCCCCceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccCCCCCCCCCCCCCCCCeEEEe
Q 039445 191 -GVIDPRGIKLGSRKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHDDSGTNARPQQPINLRTIKLY 266 (275)
Q Consensus 191 -~~~~l~~L~~~~~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~~~~~N~Rp~Qpln~R~V~~~ 266 (275)
..||+..|+|....||+|+||||||||+|+|.|+|+++|+.+|.+|+++|.+++. .|+||+||+|+|.|.-+
T Consensus 177 ~~~id~~~~lP~s~~yyty~GSLTTPPCsEgV~W~Vl~ep~evs~~qi~~f~~~~~----~N~RPVQp~N~R~I~~~ 249 (250)
T COG3338 177 DETIDLNAFLPESRNYYTYNGSLTTPPCSEGVTWIVLKEPIEVSQEQIAEFSKLMG----HNARPVQPLNDRLILEA 249 (250)
T ss_pred eeccChhHhCccccceEEecccccCCCcccCceEEEEcCcccCCHHHHHHHHHHhC----CCCCCCcCCCCcEEEec
Confidence 4599999999999999999999999999999999999999999999999999874 79999999999999754
No 3
>cd03124 alpha_CA_prokaryotic_like Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carb
Probab=100.00 E-value=3.8e-69 Score=473.63 Aligned_cols=214 Identities=45% Similarity=0.810 Sum_probs=194.1
Q ss_pred CCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCceeeeeccceEEEecCceeEEEeeCCCceEEEcCeEEEeee
Q 039445 44 GPSKWGELHKEWSACKKGTMQSPIDLLNERVQVVSHLGRLKRSYKPSYATLKNRGHDMMLQWHGGAGTLLINGTEYVLKQ 123 (275)
Q Consensus 44 gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~l~N~G~tv~v~~~~~~~~~~~~g~~Y~l~q 123 (275)
||++|+.++++|+.|++|++||||||.+..+...+ +.+|++.|.+..+++.|+||++++.++++.+.+.++|..|.|.|
T Consensus 1 gp~~W~~~~~~~~~C~~G~~QSPI~I~~~~~~~~~-~~~l~~~~~~~~~~l~N~G~tv~~~~~~~~~~~~~~g~~Y~l~q 79 (216)
T cd03124 1 GPEHWGNLDPEFALCATGKNQSPIDITTKAVVSDK-LPPLNYNYKPTSATLVNNGHTIQVNFEGNGGTLTIDGETYQLLQ 79 (216)
T ss_pred CCcchhhCCcchhhhcCCCCCCCEeeccCceeecC-CCCceeeccCCceEEEECCceEEEEEcCCCCeEEECCcEEEEEE
Confidence 78999999989999999999999999987666544 78899888777889999999999999865568899999999999
Q ss_pred eEecCCCCCccccccccceeeeeeecCCcceEEEEEEEeeCCCCchhHHHHHHHhhhhcCCCceEEeccc-CCCCcCCCC
Q 039445 124 CHWHSPSEHTIDGERFALEAHMVHESQDGKIAVVGIMYKIGRPDSLLASISDHLRQIAGSNERETVVGVI-DPRGIKLGS 202 (275)
Q Consensus 124 ~HFH~gSEHtidG~~y~~E~HiVh~~~~~~laVl~v~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~i~~~-~l~~L~~~~ 202 (275)
|||||||||+|||++|||||||||++.++++|||||||++++.|++++.+++.+..+.. +...+..+ ++..|+|+.
T Consensus 80 ~HfH~gSEH~idg~~y~~ElH~Vh~~~~~~laVl~v~~~~~~~n~~l~~i~~~l~~~~~---~~~~~~~~~~~~~llp~~ 156 (216)
T cd03124 80 FHFHSPSEHLINGKRYPLEAHLVHKSKDGQLAVVAVLFEEGKENPFLKKILDNMPKKEG---TEVNLPAILDPNELLPES 156 (216)
T ss_pred EEecCCcccEeccccCCceeeEEEEcCCCCEEEEEEEEeecCCCHHHHHHHHhhhhhcC---CceeccCCCCHHHhcccC
Confidence 99999999999999999999999999999999999999999999999999998877642 34445556 888888888
Q ss_pred CceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccCCCCCCCCCCCCCCCCeEE
Q 039445 203 RKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHDDSGTNARPQQPINLRTIK 264 (275)
Q Consensus 203 ~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~~~~~N~Rp~Qpln~R~V~ 264 (275)
.+||+|.||||||||+|+|+|+||++|+.||.+||++||+++ +.+|+||+||+|||.|+
T Consensus 157 ~~y~~Y~GSLTtPpC~E~V~W~V~~~~~~is~~Ql~~f~~~~---~~~N~Rp~Q~ln~R~v~ 215 (216)
T cd03124 157 RSYYRYEGSLTTPPCSEGVRWIVLKQPITISKEQLAKFRAAV---YPNNARPVQPLNGREVL 215 (216)
T ss_pred CceEEEeeecCCCCCcCceEEEecCCccccCHHHHHHHHHhc---cCCCCCCCCCCCCceee
Confidence 999999999999999999999999999999999999999985 35899999999999996
No 4
>cd03121 alpha_CARP_X_XI_like Carbonic anhydrase alpha related protein: groups X, XI and related proteins. This subgroup contains carbonic anhydrase related proteins (CARPs) X and XI, which have been implicated in various biological processes of the central nervous system. CARPs are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP XI plays a role in the development of gastrointestinal stromal tumors.
Probab=100.00 E-value=4.5e-69 Score=484.02 Aligned_cols=223 Identities=28% Similarity=0.480 Sum_probs=197.6
Q ss_pred CCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCceeeee-ccceEEEecCceeEEEeeCCCceEEEcC----eE
Q 039445 44 GPSKWGELHKEWSACKKGTMQSPIDLLNERVQVVSHLGRLKRSYK-PSYATLKNRGHDMMLQWHGGAGTLLING----TE 118 (275)
Q Consensus 44 gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~-~~~~~l~N~G~tv~v~~~~~~~~~~~~g----~~ 118 (275)
||++|+.++++|..|++|++||||||.+..+...+.+.+|.+.|. +..++|.|+||||++.+.++ +.+.+.| .+
T Consensus 1 GP~~W~~~~~~~~~C~~G~~QSPI~I~~~~~~~~~~l~~L~~~~~~~~~~~l~N~Ghtv~v~~~~~-~~~~i~gG~l~~~ 79 (256)
T cd03121 1 GPSFWGLVNSAWNLCSKGRRQSPVDIEPSRLLFDPFLTPLRIDTGRKVSGTFYNTGRHVSFRPDKD-PVVNISGGPLSYR 79 (256)
T ss_pred CCCcccccCCchhhccCCCCcCCEeEeccceEECCCCCceeeccCCCCceEEEECCEEEEEEECCC-CceEEeCCCCCCc
Confidence 799999999999999999999999999987777777888998876 67789999999999998643 4566744 57
Q ss_pred EEeeeeEecC------CCCCccccccccceeeeeeecCC------------cceEEEEEEEeeCC-CCchhHHHHHHHh-
Q 039445 119 YVLKQCHWHS------PSEHTIDGERFALEAHMVHESQD------------GKIAVVGIMYKIGR-PDSLLASISDHLR- 178 (275)
Q Consensus 119 Y~l~q~HFH~------gSEHtidG~~y~~E~HiVh~~~~------------~~laVl~v~~~~~~-~n~~l~~i~~~l~- 178 (275)
|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++|. +|+.++.|++.+.
T Consensus 80 Y~l~Q~HFHwG~~~~~gSEH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVvgv~~~~g~~~n~~l~~i~~~l~~ 159 (256)
T cd03121 80 YRLEEIRLHFGREDEQGSEHTVNGQAFPGEVQLIHYNSELYPNFSEASKSPNGLVIVSLFVKIGETSNPELRRLTNRDTI 159 (256)
T ss_pred EEEEEEEEecCCCCCCCCceeeCCcccCceEEEEEEcccccCCHHHHhcCCCCeEEEEEEEeecccCCHHHHHHHHhccc
Confidence 9999999998 79999999999999999999875 89999999999996 6999999999998
Q ss_pred -hhhcCCCceEEecccCCCCcCCCCCceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccC-------CCCC
Q 039445 179 -QIAGSNERETVVGVIDPRGIKLGSRKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHD-------DSGT 250 (275)
Q Consensus 179 -~i~~~~~~~~~i~~~~l~~L~~~~~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~-------~~~~ 250 (275)
.+.. .++...+..|++..|+|...+||+|.||||||||+|+|+|+||++|++||.+||++||+++.. .+.+
T Consensus 160 ~~i~~-~~~~~~~~~~~l~~Llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~~~~~ 238 (256)
T cd03121 160 TSIRY-KGDAYFLQDLSIELLLPETDHYITYEGSLTSPGCHETVTWIILNKPIYITKEQMHSLRLLSQNSPSQEKAPMSP 238 (256)
T ss_pred ccccc-CCceeecCCCCHHHHCCCCCceEEeeccccCCCCCcceEEEEeCccEecCHHHHHHHHHHhhccCCcccCcCCC
Confidence 7765 455666677888889888899999999999999999999999999999999999999998742 1468
Q ss_pred CCCCCCCCCCCeEEEeCC
Q 039445 251 NARPQQPINLRTIKLYRP 268 (275)
Q Consensus 251 N~Rp~Qpln~R~V~~~~~ 268 (275)
|+||+||||||.|+++++
T Consensus 239 N~Rp~Q~ln~R~V~~~~~ 256 (256)
T cd03121 239 NFRPVQPLNNRPVRTNIN 256 (256)
T ss_pred CCCCCCCCCCCeEEeeCC
Confidence 999999999999998754
No 5
>cd03119 alpha_CA_I_II_III_XIII Carbonic anhydrase alpha, isozymes I, II, and III and XIII. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozymes I, II, and III, which are cytoplasmic enzymes. CA I, for example, is expressed in erythrocyes of many vertebrates; CA II is the most active cytosolic isozyme; while it is being expressed nearly ubiquitously, it comprises 95% of the renal carbonic anhydrase and is required for renal acidification; C
Probab=100.00 E-value=1.1e-68 Score=482.42 Aligned_cols=227 Identities=33% Similarity=0.572 Sum_probs=197.7
Q ss_pred CCcccCCCCCCCCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCceeeeecc-ceEEEecCceeEEEeeCCCce
Q 039445 33 KEFNYEEEGQRGPSKWGELHKEWSACKKGTMQSPIDLLNERVQVVSHLGRLKRSYKPS-YATLKNRGHDMMLQWHGGAGT 111 (275)
Q Consensus 33 ~~w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~-~~~l~N~G~tv~v~~~~~~~~ 111 (275)
.+|+|. +..||++|+.+++ .|. |++||||||.+..+...+.+.+|.++|... ..+|.|+||||++.+.++.+.
T Consensus 3 ~~w~Y~--~~~gp~~W~~~~~---~~~-G~~QSPI~I~~~~~~~~~~l~~l~~~y~~~~~~~l~N~G~tv~~~~~~~~~~ 76 (259)
T cd03119 3 HHWGYD--SHNGPEHWHELFP---IAK-GDRQSPIDIKTKDAKHDPSLKPLSVSYDPATAKTILNNGHSFNVEFDDTDDR 76 (259)
T ss_pred cccCCC--CCCCcccccccCc---CCC-CCCCCCEeEccCeeeEcCCCCceecccccCcceEEEeCCeeEEEEeCCCCCc
Confidence 569994 5789999998654 575 999999999988877777888888888643 569999999999998754444
Q ss_pred EEEc-C---eEEEeeeeEecC------CCCCccccccccceeeeeeecCC-----------cceEEEEEEEeeCCCCchh
Q 039445 112 LLIN-G---TEYVLKQCHWHS------PSEHTIDGERFALEAHMVHESQD-----------GKIAVVGIMYKIGRPDSLL 170 (275)
Q Consensus 112 ~~~~-g---~~Y~l~q~HFH~------gSEHtidG~~y~~E~HiVh~~~~-----------~~laVl~v~~~~~~~n~~l 170 (275)
+.+. | .+|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++|+.|+++
T Consensus 77 ~~~~gg~l~~~Y~l~q~HfHwG~~~~~gSEH~idg~~~p~E~HlVH~n~~y~~~~~A~~~~~glaVvgvl~~~g~~n~~l 156 (259)
T cd03119 77 SVLRGGPLTGSYRLRQFHFHWGSSDDHGSEHTVDGVKYAAELHLVHWNSKYGSFGEAAKQPDGLAVVGVFLKVGEANPEL 156 (259)
T ss_pred ceEeCCCCCCcEEEEEEEEEeCCCCCCCccceecCccccceEEEEEecccCCCHHHHhcCCCCeEEEEEEEEecccchhH
Confidence 5554 4 589999999998 79999999999999999999864 7899999999999999999
Q ss_pred HHHHHHHhhhhcCCCceEEecccCCCCcCCCCCceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccC----
Q 039445 171 ASISDHLRQIAGSNERETVVGVIDPRGIKLGSRKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHD---- 246 (275)
Q Consensus 171 ~~i~~~l~~i~~~~~~~~~i~~~~l~~L~~~~~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~---- 246 (275)
+.|++.|..+.. .+++..+..|++.+|+|...+||+|.||||||||+|+|+|+||++|+.||.+||++||+++..
T Consensus 157 ~~i~~~l~~i~~-~~~~~~~~~~~l~~llp~~~~yy~Y~GSLTTPpC~E~V~W~V~~~~i~is~~Ql~~fr~l~~~~~~~ 235 (259)
T cd03119 157 QKVLDALDSIKT-KGKQAPFTNFDPSCLLPASLDYWTYPGSLTTPPLLECVTWIVLKEPISVSSEQMAKFRSLLFNAEGE 235 (259)
T ss_pred HHHHHHHHHhcc-CCceeeecCCCHHHHcCCCCCeEEeccccCCCCCCCceEEEEeCCeeeCCHHHHHHHHHHhhccCCC
Confidence 999999999876 455555667999999988889999999999999999999999999999999999999998753
Q ss_pred ---CCCCCCCCCCCCCCCeEEEe
Q 039445 247 ---DSGTNARPQQPINLRTIKLY 266 (275)
Q Consensus 247 ---~~~~N~Rp~Qpln~R~V~~~ 266 (275)
.+.+|+||+||||||.|+.+
T Consensus 236 ~~~~~~~N~Rp~Qpln~R~V~~~ 258 (259)
T cd03119 236 PPCPMVDNWRPPQPLKGRKVRAS 258 (259)
T ss_pred ccccccCCCCCCCCCCCCEEEec
Confidence 24689999999999999875
No 6
>PF00194 Carb_anhydrase: Eukaryotic-type carbonic anhydrase; InterPro: IPR001148 Carbonic anhydrases (CA: 4.2.1.1 from EC) are zinc metalloenzymes which catalyse the reversible hydration of carbon dioxide to bicarbonate [, ]. CAs have essential roles in facilitating the transport of carbon dioxide and protons in the intracellular space, across biological membranes and in the layers of the extracellular space; they are also involved in many other processes, from respiration and photosynthesis in eukaryotes to cyanate degradation in prokaryotes. There are five known evolutionarily distinct CA families (alpha, beta, gamma, delta and epsilon) that have no significant sequence identity and have structurally distinct overall folds. Some CAs are membrane-bound, while others act in the cytosol; there are several related proteins that lack enzymatic activity. The active site of alpha-CAs is well described, consisting of a zinc ion coordinated through 3 histidine residues and a water molecule/hydroxide ion that acts as a potent nucleophile. The enzyme employs a two-step mechanism: in the first step, there is a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide; in the second step, the active site is regenerated by the ionisation of the zinc-bound water molecule and the removal of a proton from the active site []. Beta- and gamma-CAs also employ a zinc hydroxide mechanism, although at least some beta-class enzymes do not have water directly coordinated to the metal ion. The alpha-CAs are found predominantly in animals but also in bacteria and green algae. There are at least 15 isoforms found in mammals, which can be subdivided into cytosolic CAs (CA-I, CA-II, CA-III, CA-VII and CA XIII), mitochondrial CAs (CA-VA and CA-VB), secreted CAs (CA-VI), membrane-associated (CA-IV, CA-IX, CA-XII and CA-XIV) and those without CA activity, the CA-related proteins (CA-RP VIII, X and XI). The beta-CAs are highly abundant in plants, diatoms, eubacteria and archaea [, ]. The beta-CAs are far more diverse in sequence than other classes, and can be divided into different clades based on sequence identity, with the plant enzymes forming two clades representing dicotyledonous and monocotyledonous plants. Characterisation of these enzymes reveals sharp differences between the beta class, which forms dimers, tetramers, hexamers and octomers, and the alpha and gamma classes, which form strictly monomers and trimers. The gamma-CAs may be the most ancient form of carbonic anhydrases, having evolved long before the alpha class, to which it is more closely related than to the beta-class [, ]. The reaction mechanism of the gamma-class is similar to that of the alpha-class, even though the overall folds are dissimilar and the active site residues differ. The delta-CAs are found in marine algae and dinoflagellates []. The epsilon-CAs are found in prokaryotes such as Thiobacillus neapolitanus (Halothiobacillus neapolitanus) in which it is a component of the carboxysome shell, where it could supply the active sites of RuBisCO in the carboxysome with the high concentrations of carbon dioxide necessary for optimal RuBisCO activity and efficient carbon fixation []. This entry represents a domain found in alpha class carbonic anhydrases. More information about these proteins can be found at Protein of the Month: Carbonic Anhydrase [].; PDB: 3FE4_A 2W2J_A 3B1B_B 2HFW_A 1Z93_A 1Z97_A 3UYQ_A 3UYN_A 1JD0_B 1JCZ_B ....
Probab=100.00 E-value=5.2e-67 Score=470.97 Aligned_cols=225 Identities=36% Similarity=0.632 Sum_probs=183.5
Q ss_pred cccCCCCCCCCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCceeeeec-cceEEEecCceeEEEeeCCCceEE
Q 039445 35 FNYEEEGQRGPSKWGELHKEWSACKKGTMQSPIDLLNERVQVVSHLGRLKRSYKP-SYATLKNRGHDMMLQWHGGAGTLL 113 (275)
Q Consensus 35 w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~-~~~~l~N~G~tv~v~~~~~~~~~~ 113 (275)
|+|+ +.+||++|+++++ .|+ |++||||||.+..+...+.+.+|.+.|.. ...++.|+||++++.+++......
T Consensus 1 W~Y~--~~~gp~~W~~~~~---~~~-G~~QSPInI~~~~~~~~~~l~~l~~~~~~~~~~~~~N~G~tv~v~~~~~~~~~~ 74 (256)
T PF00194_consen 1 WGYS--GNNGPENWPKLYP---CCG-GKRQSPININTSEAVYDPSLPPLKFSYYESSAGTLKNNGHTVQVNFDDTNNKPT 74 (256)
T ss_dssp CSSS--TTTSGGGHHHTSG---GGG-SSS-S-BEE-GGGSEEETTSEEEEEESTTSGEEEEEE-SSSEEEEECTSSSSSE
T ss_pred CcCC--CCCChhhhhhhCc---ccC-CCccCCEeeCcCccccccCCCCcEEeeccccceEEEecCceEEEEeCCCcccce
Confidence 9995 5789999998754 576 99999999999888777888888887744 345999999999999976433344
Q ss_pred EcC----eEEEeeeeEecC------CCCCccccccccceeeeeeec------------CCcceEEEEEEEeeCCCCchhH
Q 039445 114 ING----TEYVLKQCHWHS------PSEHTIDGERFALEAHMVHES------------QDGKIAVVGIMYKIGRPDSLLA 171 (275)
Q Consensus 114 ~~g----~~Y~l~q~HFH~------gSEHtidG~~y~~E~HiVh~~------------~~~~laVl~v~~~~~~~n~~l~ 171 (275)
+.| .+|+|.|||||| ||||+|||++|||||||||++ .++++||||||+++++.|+.++
T Consensus 75 i~g~~l~~~Y~l~q~HfHwg~~~~~gSEH~idG~~y~~E~H~Vh~~~~~y~~~~~a~~~~~~laVl~v~~~~~~~n~~l~ 154 (256)
T PF00194_consen 75 ISGGPLPGEYRLEQFHFHWGSDNSSGSEHTIDGKRYPMEMHFVHRNSKKYSSFEEASKEPDGLAVLGVFFEIGESNPFLQ 154 (256)
T ss_dssp EEETTESSEEEEEEEEEEESSSTTSSSSSEETTBE-SEEEEEEEEETTTGSSHHHHTTSTTSEEEEEEEEEESS--GHHH
T ss_pred ecCCCccceEEEEEEEEecccCCCCccccchhhhhcccceeeeeeccccccchhhhhhccccceEEEEEeeccccccccc
Confidence 433 679999999998 699999999999999999999 5689999999999999999999
Q ss_pred HHHHHHhhhhcCCCceEEecccCCCCcCCCCCceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccCC----
Q 039445 172 SISDHLRQIAGSNERETVVGVIDPRGIKLGSRKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHDD---- 247 (275)
Q Consensus 172 ~i~~~l~~i~~~~~~~~~i~~~~l~~L~~~~~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~~---- 247 (275)
.|++.|+.+.. .++...+..|++++|+|....||+|.||||||||+|+|+|+||++|+.||.+||++||+++...
T Consensus 155 ~i~~~l~~i~~-~~~~~~~~~~~l~~llp~~~~yy~Y~GSLTtPpCtE~V~W~V~~~pi~is~~Ql~~f~~~~~~~~~~~ 233 (256)
T PF00194_consen 155 PILDALPNIPY-PGSSTPIQSFSLSDLLPSTRSYYRYNGSLTTPPCTEGVTWIVFKEPIPISQDQLNKFRKLLGNNNGEE 233 (256)
T ss_dssp HHHHHGGGGTS-TTEEEEEESBBGGGGSCSSSSEEEEEEE-SSTTSSSEEEEEEESSEEEEEHHHHHHHHTSBSSCTTSS
T ss_pred hhhhhhhhccc-cccccccccccccccCCCCCCEEEEcccccCCCcceeEEEEEeeeEEEEeHHHHHHHHHHhhcccCCc
Confidence 99999999876 5667778889999999999999999999999999999999999999999999999999987532
Q ss_pred ---CCCCCCCCCCCCCCeEEEe
Q 039445 248 ---SGTNARPQQPINLRTIKLY 266 (275)
Q Consensus 248 ---~~~N~Rp~Qpln~R~V~~~ 266 (275)
+.+|+||+||||||.|+.+
T Consensus 234 ~~~~~~N~Rp~QpLn~R~V~~s 255 (256)
T PF00194_consen 234 FAPLVNNFRPVQPLNGRKVYAS 255 (256)
T ss_dssp ECBSSS-S---B--TTS-EEES
T ss_pred cccCCCCcCCCCCCCCcEEEeC
Confidence 4689999999999999875
No 7
>cd03126 alpha_CA_XII_XIV Carbonic anhydrase alpha, isozymes XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane proteins CA XII and XIV.
Probab=100.00 E-value=1.6e-66 Score=465.71 Aligned_cols=215 Identities=35% Similarity=0.550 Sum_probs=187.4
Q ss_pred CCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCcee-eeec---cceEEEecCceeEEEeeCCCceEEEcC--e
Q 039445 44 GPSKWGELHKEWSACKKGTMQSPIDLLNERVQVVSHLGRLKR-SYKP---SYATLKNRGHDMMLQWHGGAGTLLING--T 117 (275)
Q Consensus 44 gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~y~~---~~~~l~N~G~tv~v~~~~~~~~~~~~g--~ 117 (275)
||++|+.. |+.|+ |++||||||.+..+...+.+.+|.+ +|.. ..++|.|+||||++.+.+ .+.++| .
T Consensus 1 gp~~W~~~---~~~C~-G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~~l~N~Ghtv~v~~~~---~~~~~~l~~ 73 (249)
T cd03126 1 GENSWPKK---YPFCG-GVAQSPIDIHTDILQYDSSLPPLEFHGYNVSGTEQFTLTNNGHTVQLSLPP---TMHIGGLPF 73 (249)
T ss_pred CCCccccc---CCCCC-CCccCCEeEecCceeECCCCCccEEeccccCCCCceEEEECCEeEEEEEcC---CceecCCCc
Confidence 68999875 45798 9999999999887777788888988 5753 357999999999999863 345666 7
Q ss_pred EEEeeeeEecC-------CCCCccccccccceeeeeeecCC------------cceEEEEEEEeeCCCCchhHHHHHHHh
Q 039445 118 EYVLKQCHWHS-------PSEHTIDGERFALEAHMVHESQD------------GKIAVVGIMYKIGRPDSLLASISDHLR 178 (275)
Q Consensus 118 ~Y~l~q~HFH~-------gSEHtidG~~y~~E~HiVh~~~~------------~~laVl~v~~~~~~~n~~l~~i~~~l~ 178 (275)
+|.|.|||||| ||||+|||++|||||||||+|.+ +++|||||||++|+.|+.++.|++.|.
T Consensus 74 ~Y~l~qfHfHwG~~~~~~gSEH~idG~~y~~E~HlVH~n~~~y~~~~~A~~~~~glaVl~v~~~~g~~n~~~~~i~~~l~ 153 (249)
T cd03126 74 KYTASQLHLHWGQRGSPEGSEHTISGKHFAAELHIVHYNSDKYPDISTAMNKSQGLAVLGILIEVGPFNPSYEKIFSHLH 153 (249)
T ss_pred cEEEEEEEEEeCCCCCCCCceeeecCcccCceEEEEEecCccCCCHHHHhhcCCCeEEEEEEEEecCCChhHHHHHHHhh
Confidence 99999999998 68999999999999999999975 899999999999999999999999999
Q ss_pred hhhcCCCceEEecccCCCCcCCCC-CceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccC-------CCCC
Q 039445 179 QIAGSNERETVVGVIDPRGIKLGS-RKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHD-------DSGT 250 (275)
Q Consensus 179 ~i~~~~~~~~~i~~~~l~~L~~~~-~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~-------~~~~ 250 (275)
.+.. .++...+..|++.+|+|.. .+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+
T Consensus 154 ~i~~-~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~is~~Ql~~fr~~~~~~~~~~~~~~~~ 232 (249)
T cd03126 154 EVKY-KDQKVSVPGFNVQELLPKRLDEYYRYEGSLTTPPCYPSVLWTVFRNPVQISQEQLLALETALYSTEEDESREMVN 232 (249)
T ss_pred hccc-CCceeEcCCCCHHHhCccccCCeEEEeccCcCCCCcCceEEEEeCCceecCHHHHHHHHHHhhhcccCccCcccC
Confidence 8875 4555556678898888865 57999999999999999999999999999999999999997632 1468
Q ss_pred CCCCCCCCCCCeEEEe
Q 039445 251 NARPQQPINLRTIKLY 266 (275)
Q Consensus 251 N~Rp~Qpln~R~V~~~ 266 (275)
|+||+||||||.|+++
T Consensus 233 N~Rp~QplngR~V~~~ 248 (249)
T cd03126 233 NYRQVQPFNERLVFAS 248 (249)
T ss_pred CCCCCCCCCCCEEEec
Confidence 9999999999999875
No 8
>cd03125 alpha_CA_VI Carbonic anhydrase alpha, isozyme VI. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva.
Probab=100.00 E-value=6.8e-66 Score=461.57 Aligned_cols=217 Identities=33% Similarity=0.572 Sum_probs=186.3
Q ss_pred CCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCcee-eee--ccceEEEecCceeEEEeeCCCceEEE-cCeEE
Q 039445 44 GPSKWGELHKEWSACKKGTMQSPIDLLNERVQVVSHLGRLKR-SYK--PSYATLKNRGHDMMLQWHGGAGTLLI-NGTEY 119 (275)
Q Consensus 44 gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~y~--~~~~~l~N~G~tv~v~~~~~~~~~~~-~g~~Y 119 (275)
+|++|++. |+.|+ |++||||||.+..+...+.+.+|.+ +|. +..+++.|+||||++.+.++. .+.. .|.+|
T Consensus 1 ~~~~W~~~---~~~C~-G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~i~N~Ghtv~v~~~~~~-~~~~~~~~~Y 75 (249)
T cd03125 1 DESHWPEK---YPACG-GKRQSPIDIQRREVRFNPSLLQLELVGYEKEQGEFTMTNNGHTVQIDLPPTM-SITTGDGTVY 75 (249)
T ss_pred CCCccccc---CcCCC-CCCCCCEeEccCceeECCCCCceEeecccCCCccEEEEECCEEEEEEeCCCc-ccccCCCCCE
Confidence 36789974 56897 9999999999987776778888887 675 446899999999999986432 2322 46899
Q ss_pred EeeeeEecC--------CCCCccccccccceeeeeeecCC-----------cceEEEEEEEeeCC--CCchhHHHHHHHh
Q 039445 120 VLKQCHWHS--------PSEHTIDGERFALEAHMVHESQD-----------GKIAVVGIMYKIGR--PDSLLASISDHLR 178 (275)
Q Consensus 120 ~l~q~HFH~--------gSEHtidG~~y~~E~HiVh~~~~-----------~~laVl~v~~~~~~--~n~~l~~i~~~l~ 178 (275)
+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++|+ .|+.++.|++.|.
T Consensus 76 ~l~q~HFHWG~~~~~~~gSEH~idG~~yp~E~HlVH~n~~y~~~~~a~~~~~glaVl~v~~~~~~~~~n~~~~~i~~~l~ 155 (249)
T cd03125 76 TAVQMHFHWGGRDSEISGSEHTIDGMRYVAELHIVHYNSKYKSYEEAKDKPDGLAVLAFLYKVGHYAENTYYSDFISKLA 155 (249)
T ss_pred EEEEEEEEecCCCCCCCCccceeccccCCceEEEEEecCCCCCHHHHhcCCCceEEEEEEEEeccCcCCccHHHHHHHHh
Confidence 999999997 79999999999999999999874 89999999999997 8999999999999
Q ss_pred hhhcCCCceEEecccCCCCcCCCC-CceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccC----CCCCCCC
Q 039445 179 QIAGSNERETVVGVIDPRGIKLGS-RKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHD----DSGTNAR 253 (275)
Q Consensus 179 ~i~~~~~~~~~i~~~~l~~L~~~~-~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~----~~~~N~R 253 (275)
.+.. .++...+..|++.+|+|.. .+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.+ .+.+|+|
T Consensus 156 ~i~~-~~~~~~~~~~~~~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~fr~~~~~~~~~~l~~N~R 234 (249)
T cd03125 156 KIKY-AGQTTTLTSLDVRDMLPENLHHYYTYQGSLTTPPCTENVLWFVFDDPVTLSKTQIVKLENTLMDHHNKTIRNDYR 234 (249)
T ss_pred hccc-CCceeecCCCCHHHhCCcCcCCeEEEeccCcCCCCCCceEEEEeCCceecCHHHHHHHHHHhcccCCCcccCCCC
Confidence 8875 5556666778888888765 67999999999999999999999999999999999999986532 2568999
Q ss_pred CCCCCCCCeEEEe
Q 039445 254 PQQPINLRTIKLY 266 (275)
Q Consensus 254 p~Qpln~R~V~~~ 266 (275)
|+||||||.|+.+
T Consensus 235 p~Qpln~R~V~~~ 247 (249)
T cd03125 235 RTQPLNHRVVEAN 247 (249)
T ss_pred CCCCCCCCeEEee
Confidence 9999999999864
No 9
>cd03122 alpha_CARP_receptor_like Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. This sub-family of carbonic anhydrase-related domains found in tyrosine phosphatase receptors may play a role in cell adhesion.
Probab=100.00 E-value=8.8e-66 Score=461.95 Aligned_cols=217 Identities=29% Similarity=0.569 Sum_probs=186.4
Q ss_pred CCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCceeeeec---cceEEEecCceeEEEeeCCCceEEEcC----
Q 039445 44 GPSKWGELHKEWSACKKGTMQSPIDLLNERVQVVSHLGRLKRSYKP---SYATLKNRGHDMMLQWHGGAGTLLING---- 116 (275)
Q Consensus 44 gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~---~~~~l~N~G~tv~v~~~~~~~~~~~~g---- 116 (275)
||++|+.. |+.|++|++||||||.+..+.....+.+|.+.|.. ..++|.|+||||++.+.++.+.+.++|
T Consensus 1 gp~~W~~~---~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~~~~~~~~~~~l~N~Ghtv~v~~~~~~~~~~i~gg~l~ 77 (253)
T cd03122 1 NPKHWAKK---YPACGEGRQQSPIDIVEDTQVQRQGLQPLHFDGYEELTASTTLENTGKTVILRLEGNSSDPFVSGGPLL 77 (253)
T ss_pred Cccccccc---CCcCCCCCCCCCEeEeecceeccCCCCCeEEeccCCCCCceEEEECCeEEEEEecCCCCceEEeCCCCC
Confidence 68999984 55799999999999988543332337788886633 578999999999999875445677777
Q ss_pred eEEEeeeeEecC------CCCCccccccccceeeeeeecCC-----------cceEEEEEEEeeC-CCCchhHHHHHHHh
Q 039445 117 TEYVLKQCHWHS------PSEHTIDGERFALEAHMVHESQD-----------GKIAVVGIMYKIG-RPDSLLASISDHLR 178 (275)
Q Consensus 117 ~~Y~l~q~HFH~------gSEHtidG~~y~~E~HiVh~~~~-----------~~laVl~v~~~~~-~~n~~l~~i~~~l~ 178 (275)
.+|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++| ..|++++.|++.+.
T Consensus 78 ~~Y~l~q~HFHwG~~~~~gSEH~idg~~yp~E~H~VH~n~~~~~~~~A~~~~~~laVv~vl~~~g~~~n~~l~~i~~~l~ 157 (253)
T cd03122 78 GRYKFSEITFHWGTCNSDGSEHSIDGHKFPLEMQILHRNTDFFDSFEAIKSPGGVLALAYLFELSHEDNPFLDPIIEGLR 157 (253)
T ss_pred CcEEEEEEEEEeCCCCCCCCceeecCccCcceEEEEEEcCCCCCHHHHhhcCCCeEEEEEEEEEecCCCHhHHHHHHHHH
Confidence 579999999997 68999999999999999999875 6999999999999 68999999999999
Q ss_pred hhhcCCCceEEecccCCCCcCCC-CCceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccC---------CC
Q 039445 179 QIAGSNERETVVGVIDPRGIKLG-SRKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHD---------DS 248 (275)
Q Consensus 179 ~i~~~~~~~~~i~~~~l~~L~~~-~~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~---------~~ 248 (275)
.+.. .++...+..|++.+|+|. ..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+
T Consensus 158 ~i~~-~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~~~~~ 236 (253)
T cd03122 158 NVSR-PGKEVELPPFPLSDLLPPFTDKYYSYEGSLTTPPCSETVEWIVFREPVPISSRQLEAFRELLTRRQDGVMSGDYL 236 (253)
T ss_pred hcCC-CCcEEEcCCCCHHHHhccccCCeEEEeeeccCCCCcCceEEEEeCceeecCHHHHHHHHHHhcccccccccCccc
Confidence 8876 455566667888888875 478999999999999999999999999999999999999998742 24
Q ss_pred CCCCCCCCCCCCCeEE
Q 039445 249 GTNARPQQPINLRTIK 264 (275)
Q Consensus 249 ~~N~Rp~Qpln~R~V~ 264 (275)
.+|+||+||||||.|+
T Consensus 237 ~~N~Rp~Qpln~R~V~ 252 (253)
T cd03122 237 PNNGRPQQPLGSRTVF 252 (253)
T ss_pred cCCCcCCCCCCCCEec
Confidence 6899999999999995
No 10
>cd03123 alpha_CA_VI_IX_XII_XIV Carbonic anhydrase alpha, isozymes VI, IX, XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are mostly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva, for example, and the membrane proteins CA IX, XII, and XIV.
Probab=100.00 E-value=3e-65 Score=457.24 Aligned_cols=217 Identities=38% Similarity=0.567 Sum_probs=185.2
Q ss_pred CCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCcee-eeec--c-ceEEEecCceeEEEeeCCCceEEE-cCeE
Q 039445 44 GPSKWGELHKEWSACKKGTMQSPIDLLNERVQVVSHLGRLKR-SYKP--S-YATLKNRGHDMMLQWHGGAGTLLI-NGTE 118 (275)
Q Consensus 44 gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~y~~--~-~~~l~N~G~tv~v~~~~~~~~~~~-~g~~ 118 (275)
+|++|++++ +.|+ |++||||||.+..+...+.+.+|.+ +|.. . .++|.|+||||++.+.++ ..+.. .+.+
T Consensus 1 ~p~~W~~~~---~~C~-G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~~i~N~Ghtv~v~~~~~-~~~~gg~~~~ 75 (248)
T cd03123 1 GEDHWPKKY---PACG-GKRQSPIDIQTDIVQFDPSLPPLELVGYDLPGTEEFTLTNNGHTVQLSLPPT-MHIRGGPGTE 75 (248)
T ss_pred CCCcccccC---cCCC-CCCCCCEeEeccceeecCCCCcceecccccCCCCceEEEECCeeEEEEeCCC-ccccCCCCCC
Confidence 588999864 5797 9999999999988776777888887 5743 2 679999999999998642 12221 1268
Q ss_pred EEeeeeEecC-------CCCCccccccccceeeeeeecC------------CcceEEEEEEEeeC-CCCchhHHHHHHHh
Q 039445 119 YVLKQCHWHS-------PSEHTIDGERFALEAHMVHESQ------------DGKIAVVGIMYKIG-RPDSLLASISDHLR 178 (275)
Q Consensus 119 Y~l~q~HFH~-------gSEHtidG~~y~~E~HiVh~~~------------~~~laVl~v~~~~~-~~n~~l~~i~~~l~ 178 (275)
|.|.|||||| ||||+|||++|||||||||++. ++++|||||||++| ..|+.++.|++.|.
T Consensus 76 Y~l~qfHfHwG~~~~~~gSEH~idG~~yp~E~HlVh~n~~~y~~~~~A~~~~~~laVl~v~~~~~~~~n~~~~~i~~~l~ 155 (248)
T cd03123 76 YTAAQLHLHWGGRGSLSGSEHTIDGIRFAAELHIVHYNSDKYSSFDEAADKPDGLAVLAILIEVGYPENTYYEKIISHLH 155 (248)
T ss_pred EEEEEEEEeeCCCCCCCCccceecCccCcceeEEEEEcccccCCHHHHhcCCCCeEEEEEEEEecCCCCccHHHHHHHHH
Confidence 9999999997 7999999999999999999997 48999999999999 68999999999999
Q ss_pred hhhcCCCceEEecccCCCCcCCCC-CceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccC----CCCCCCC
Q 039445 179 QIAGSNERETVVGVIDPRGIKLGS-RKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHD----DSGTNAR 253 (275)
Q Consensus 179 ~i~~~~~~~~~i~~~~l~~L~~~~-~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~----~~~~N~R 253 (275)
.+.. .++...+..|++.+|+|.. .+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+|+|
T Consensus 156 ~i~~-~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~iS~~Ql~~fr~~l~~~~~~~~~~N~R 234 (248)
T cd03123 156 EIKY-KGQETTVPGFNVRELLPEDLSHYYRYEGSLTTPPCYESVLWTVFRDPVTLSKEQLETLENTLMDTHNKTLQNNYR 234 (248)
T ss_pred hhCc-CCcEEecCCCCHHHhcCCCcCCeEEEeccCcCCCCcCcEEEEEeCCceecCHHHHHHHHHHhhccCCCcccCCCC
Confidence 8876 4555666678998888865 57999999999999999999999999999999999999986532 3579999
Q ss_pred CCCCCCCCeEEEe
Q 039445 254 PQQPINLRTIKLY 266 (275)
Q Consensus 254 p~Qpln~R~V~~~ 266 (275)
|+||||||.|+.+
T Consensus 235 p~Qpln~R~V~~~ 247 (248)
T cd03123 235 ATQPLNGRVVEAS 247 (248)
T ss_pred CCCCCCCCEEEec
Confidence 9999999999875
No 11
>cd03150 alpha_CA_IX Carbonic anhydrase alpha, isozyme IX. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are strictly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane protein CA IX. CA IX is functionally implicated in tumor growth and survival. CA IX is mainly present in solid tumors and its expression in normal tissues is limited t
Probab=100.00 E-value=3.1e-65 Score=456.77 Aligned_cols=218 Identities=34% Similarity=0.563 Sum_probs=185.7
Q ss_pred CCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCcee-eee--c-cceEEEecCceeEEEeeCCCceEEEc-CeE
Q 039445 44 GPSKWGELHKEWSACKKGTMQSPIDLLNERVQVVSHLGRLKR-SYK--P-SYATLKNRGHDMMLQWHGGAGTLLIN-GTE 118 (275)
Q Consensus 44 gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~y~--~-~~~~l~N~G~tv~v~~~~~~~~~~~~-g~~ 118 (275)
||++|+.+++ .|+ |++||||||.+..+...+.+.+|.+ +|. + ..++|+|+||||++.+.++. .+..+ |.+
T Consensus 1 ~~~~W~~~~~---~c~-G~~QSPIdI~~~~~~~~~~l~~l~~~~y~~~~~~~~~i~N~Ghtv~v~~~~~~-~~~~g~~~~ 75 (247)
T cd03150 1 GQPPWPSVSP---ACA-GRFQSPVDIRPHLVAFCPALRPLELLGFDLPPSPSLRLLNNGHTVQLSLPSGL-RMALGPGQE 75 (247)
T ss_pred CCCcccccCC---CCC-CCCcCCEeeccCceeECCCCCCceeeccccCCCCceEEEECCEEEEEEEeccc-ccccCCCCc
Confidence 5789998754 697 9999999999887776777888877 563 2 25799999999999986432 22222 589
Q ss_pred EEeeeeEecC------CCCCccccccccceeeeeeecC-----------CcceEEEEEEEeeCC-CCchhHHHHHHHhhh
Q 039445 119 YVLKQCHWHS------PSEHTIDGERFALEAHMVHESQ-----------DGKIAVVGIMYKIGR-PDSLLASISDHLRQI 180 (275)
Q Consensus 119 Y~l~q~HFH~------gSEHtidG~~y~~E~HiVh~~~-----------~~~laVl~v~~~~~~-~n~~l~~i~~~l~~i 180 (275)
|+|.|||||| ||||+|||++|||||||||++. ++++|||||||++|. +|+.++.|++.+..+
T Consensus 76 Y~l~QfHfHwG~~~~~gSEH~idg~~yp~E~HlVH~n~~y~~~~~A~~~~~glaVl~v~~~~g~~~n~~l~~i~~~l~~i 155 (247)
T cd03150 76 YRALQLHLHWGAAGRPGSEHTVDGHRFPAEIHVVHLSTAFANLDEALGRPGGLAVLAAFLAEGLHENSAYEQLLSRLSEI 155 (247)
T ss_pred EEEEEEEEEeCCCCCCCcceeeCCcccchhhheeeecccCCCHHHHhcCCCCcEEEEEEEEecCCCCHHHHHHHHHHHhh
Confidence 9999999999 7999999999999999999986 589999999999995 899999999999988
Q ss_pred hcCCCceEEecccCCCCcCCCC-CceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccC----CCCCCCCCC
Q 039445 181 AGSNERETVVGVIDPRGIKLGS-RKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHD----DSGTNARPQ 255 (275)
Q Consensus 181 ~~~~~~~~~i~~~~l~~L~~~~-~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~----~~~~N~Rp~ 255 (275)
.. .++...+..|++.+|+|.. .+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+|+||+
T Consensus 156 ~~-~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~is~~Ql~~fr~~l~~~~~~~l~~N~Rp~ 234 (247)
T cd03150 156 SE-EESETVVPGLDVSALLPSDLSRYFRYEGSLTTPPCAQGVIWTVFNQTVRLSAKQLHTLSDSLWGPHDSRLQLNFRAT 234 (247)
T ss_pred CC-CCceeecCCCCHHHHcCcccCCEEEEeeeccCCCCCCceEEEEeCceeecCHHHHHHHHHHHhccCCCcccCCCCCC
Confidence 76 4555556678888888765 57999999999999999999999999999999999999986642 256899999
Q ss_pred CCCCCCeEEEeC
Q 039445 256 QPINLRTIKLYR 267 (275)
Q Consensus 256 Qpln~R~V~~~~ 267 (275)
||||||.|+.+.
T Consensus 235 Qpln~R~V~~~~ 246 (247)
T cd03150 235 QPLNGRKIEASF 246 (247)
T ss_pred CCCCCCeEEeeC
Confidence 999999998753
No 12
>cd03149 alpha_CA_VII Carbonic anhydrase alpha, CA isozyme VII_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme VII. CA VII is the most active cytosolic enzyme after CA II, and may be highly expressed in the brain. Human CA VII may be a target of antiepileptic sulfonamides/sulfamates.
Probab=100.00 E-value=3e-64 Score=447.82 Aligned_cols=205 Identities=32% Similarity=0.531 Sum_probs=179.9
Q ss_pred CCCCCCceeeCCceeeecCCCCceeeeec-cceEEEecCceeEEEeeCCCceEEEcC----eEEEeeeeEecC------C
Q 039445 61 GTMQSPIDLLNERVQVVSHLGRLKRSYKP-SYATLKNRGHDMMLQWHGGAGTLLING----TEYVLKQCHWHS------P 129 (275)
Q Consensus 61 G~~QSPInI~~~~~~~~~~l~~l~~~y~~-~~~~l~N~G~tv~v~~~~~~~~~~~~g----~~Y~l~q~HFH~------g 129 (275)
|++||||||.+..+...+.+.+|.++|.. ..+++.|+||||++.+.++.+.+.+.| .+|+|.|||||| |
T Consensus 1 G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~~~~N~Ghtv~v~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~~g 80 (236)
T cd03149 1 GNRQSPIDIVSSEAVYDPKLKPLSLSYDPCTSLSISNNGHSVMVEFDDSDDKTVITGGPLENPYRLKQFHFHWGAKHGSG 80 (236)
T ss_pred CCCCCCeeEccCceEECCCCCceEeecCCCcceEEEECCEEEEEEecCCCCceEEecCCCCCcEEEEEEEEecCCCCCCC
Confidence 78999999999887777788889988854 367999999999999865334455554 689999999997 7
Q ss_pred CCCccccccccceeeeeeecCC------------cceEEEEEEEeeCCCCchhHHHHHHHhhhhcCCCceEEecccCCCC
Q 039445 130 SEHTIDGERFALEAHMVHESQD------------GKIAVVGIMYKIGRPDSLLASISDHLRQIAGSNERETVVGVIDPRG 197 (275)
Q Consensus 130 SEHtidG~~y~~E~HiVh~~~~------------~~laVl~v~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~i~~~~l~~ 197 (275)
|||+|||++|||||||||++.+ +++|||||||++|+.|+.++.|++.|..+.. .++...+..|++..
T Consensus 81 SEH~idg~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~~n~~l~~i~~~l~~i~~-~~~~~~~~~~~~~~ 159 (236)
T cd03149 81 SEHTVDGKTFPSELHLVHWNAKKYKSFGEAAAAPDGLAVLGVFLETGDEHPGLNRLTDALYMVRF-KGTKAQFLDFNPKC 159 (236)
T ss_pred CceeecCeeccceeeeeEecccccCCHHHHhhccCCcEEEEEEEEecCCCccHHHHHHHhhhccc-CCcceeeccCCHHH
Confidence 9999999999999999999864 8999999999999999999999999998875 45555566788888
Q ss_pred cCCCCCceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccC-------CCCCCCCCCCCCCCCeEEEe
Q 039445 198 IKLGSRKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHD-------DSGTNARPQQPINLRTIKLY 266 (275)
Q Consensus 198 L~~~~~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~-------~~~~N~Rp~Qpln~R~V~~~ 266 (275)
|+|+..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+|+||+||||||.|+.+
T Consensus 160 llp~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~is~~Ql~~fr~l~~~~~~~~~~~l~~N~Rp~Q~ln~R~v~~~ 235 (236)
T cd03149 160 LLPKSLDYWTYPGSLTTPPLNESVTWIVLKEPIPVSEKQMGKFRELLFTSEEDQRNHMVNNFRPPQPLKGRTVRAS 235 (236)
T ss_pred HCCCCCCeEEecccCcCCCCCCceEEEEeCceeeCCHHHHHHHHHhhhhccCcccccccCCCcCCCCCCCCEEEec
Confidence 9998889999999999999999999999999999999999999998742 24689999999999999875
No 13
>cd03118 alpha_CA_V Carbonic anhydrase alpha, CA isozyme V_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme V. CA V is the mitochondrial isozyme, which may play a role in gluconeogenesis and ureagenesis and possibly also in lipogenesis.
Probab=100.00 E-value=4.3e-64 Score=446.81 Aligned_cols=205 Identities=31% Similarity=0.513 Sum_probs=179.7
Q ss_pred CCCCCCceeeCCceeeecCCCCceeeeecc-ceEEEecCceeEEEeeCCCc-eEEEcC---eEEEeeeeEecC------C
Q 039445 61 GTMQSPIDLLNERVQVVSHLGRLKRSYKPS-YATLKNRGHDMMLQWHGGAG-TLLING---TEYVLKQCHWHS------P 129 (275)
Q Consensus 61 G~~QSPInI~~~~~~~~~~l~~l~~~y~~~-~~~l~N~G~tv~v~~~~~~~-~~~~~g---~~Y~l~q~HFH~------g 129 (275)
|++||||||.+..+...+.+.+|.++|.+. .++|.|+||||++.+.++.. .+..+| .+|+|.|||||| |
T Consensus 1 G~~QSPIdI~~~~~~~~~~l~~l~~~y~~~~~~~l~N~Ghtv~v~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~~g 80 (236)
T cd03118 1 GTRQSPINIQWRDSVYDPQLAPLRVSYDPATCLYIWNNGYSFQVEFDDSTDKSGISGGPLENHYRLKQFHFHWGANNEWG 80 (236)
T ss_pred CCcCCCeeEecCceeECCCCCceEEecCCCCceEEEECCEEEEEEecCCCCceEEecCCCCCcEEEEEEEEEECCCCCCC
Confidence 789999999988777777888899988644 46999999999999865332 334455 599999999999 8
Q ss_pred CCCccccccccceeeeeeecC------------CcceEEEEEEEeeCCCCchhHHHHHHHhhhhcCCCceEEecccCCCC
Q 039445 130 SEHTIDGERFALEAHMVHESQ------------DGKIAVVGIMYKIGRPDSLLASISDHLRQIAGSNERETVVGVIDPRG 197 (275)
Q Consensus 130 SEHtidG~~y~~E~HiVh~~~------------~~~laVl~v~~~~~~~n~~l~~i~~~l~~i~~~~~~~~~i~~~~l~~ 197 (275)
|||+|||++|||||||||++. +|++|||||||++|+.|+.++.|++.+..+.. .++...+..|++..
T Consensus 81 SEH~idg~~~p~E~HlVH~n~~~y~~~~~A~~~~~~laVvgv~~~~g~~n~~l~~i~~~l~~i~~-~~~~~~~~~~~~~~ 159 (236)
T cd03118 81 SEHTVDGHTYPAELHLVHWNSVKYENFEEAVMEENGLAVIGVFLKLGAHHEGLQKLVDALPEVRH-KDTVVEFNPFDPSC 159 (236)
T ss_pred CceEECCEeccceeeEEEEcccccCCHHHHhcCCCCeEEEEEEEEecCcCccHHHHHHHHHhcCc-CCceeeecCCCHHH
Confidence 999999999999999999987 48999999999999999999999999999875 45555566789999
Q ss_pred cCCCCCceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccC-------CCCCCCCCCCCCCCCeEEEe
Q 039445 198 IKLGSRKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHD-------DSGTNARPQQPINLRTIKLY 266 (275)
Q Consensus 198 L~~~~~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~-------~~~~N~Rp~Qpln~R~V~~~ 266 (275)
|+|+...||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+|+||+||||||.|+.+
T Consensus 160 llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~is~~Ql~~fr~l~~~~~~~~~~~l~~N~Rp~Qpln~R~V~~~ 235 (236)
T cd03118 160 LLPACRDYWTYPGSLTTPPLTESVTWIIQKQPIEVSPSQLSVFRTLLFTSRGEEEKVMVNNFRPLQPLMNRKVRSS 235 (236)
T ss_pred HcccCCCEEEecCcccCCCCcCceEEEEeCccccCCHHHHHHHHHHhhhccCCccccccCCCCCCCCCCCCEEEec
Confidence 9888889999999999999999999999999999999999999998742 14689999999999999875
No 14
>cd03120 alpha_CARP_VIII Carbonic anhydrase alpha related protein, group VIII. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP VIII may play roles in various biological processes of the central nervous system, and could be involved in protein-protein interactions. CARP VIII has been shown to bind inositol 1,4,5-triphosphate (IP3) receptor type I (IP3RI), reducing the affinity of the receptor for IP3. IP3RI is an intracellular IP3-gated Ca2+ channel located on intracellular Ca2+ stores. IP3RI converts IP3 signaling into Ca2+ signaling thereby participating in a variety of cell functions.
Probab=100.00 E-value=6.8e-64 Score=450.43 Aligned_cols=214 Identities=29% Similarity=0.519 Sum_probs=182.9
Q ss_pred CCccccCcCcccCCCCCCCCCceeeCCceeeecCCC--Cceeeeecc-ceEEEecCceeEEEeeCCCceEEEc-----Ce
Q 039445 46 SKWGELHKEWSACKKGTMQSPIDLLNERVQVVSHLG--RLKRSYKPS-YATLKNRGHDMMLQWHGGAGTLLIN-----GT 117 (275)
Q Consensus 46 ~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~--~l~~~y~~~-~~~l~N~G~tv~v~~~~~~~~~~~~-----g~ 117 (275)
++|+.+++ .|+ |++||||||.+..+...+.+. +|.++|.+. .++|.|+|||+++.+.++ ....+ |.
T Consensus 2 ~~W~~~~~---~c~-G~~QSPInI~~~~~~~~~~~~~~~l~~~y~~~~~~~l~N~Ghtv~v~~~~~--~~~~gg~l~~~~ 75 (256)
T cd03120 2 VEWGLLFP---EAN-GEYQSPINLNSREARYDPSLLEVRLSPNYVVCRDCEVINDGHTIQIILKSK--SVLSGGPLPQGH 75 (256)
T ss_pred CcccccCC---CCC-CCcCCCccCccCceEECCCCCcccceeccCCCCceEEEECCeEEEEEeCCC--ceeecCCCCCCc
Confidence 47998765 597 999999999988777666666 466677543 579999999999998642 22232 46
Q ss_pred EEEeeeeEecC------CCCCccccccccceeeeeeecCC------------cceEEEEEEEeeCCCCchhHHHHHHHhh
Q 039445 118 EYVLKQCHWHS------PSEHTIDGERFALEAHMVHESQD------------GKIAVVGIMYKIGRPDSLLASISDHLRQ 179 (275)
Q Consensus 118 ~Y~l~q~HFH~------gSEHtidG~~y~~E~HiVh~~~~------------~~laVl~v~~~~~~~n~~l~~i~~~l~~ 179 (275)
.|+|.|||||| ||||+|||++|||||||||++.+ |++|||||||++|+.|+.++.|++.|..
T Consensus 76 ~Y~l~q~HFHwG~~~~~gSEH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~~n~~l~~i~~~l~~ 155 (256)
T cd03120 76 EFELAEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLYSSLEEAMGKPHGIAIIALFVQIGKEHVGLKAVTEILQD 155 (256)
T ss_pred eEEEEEEEEEeCCCCCCCCceeecCccccceEEEEEecCcccCCHHHHhcCCCceEEEEEEEeecCCCHhHHHHHHHhHh
Confidence 89999999998 59999999999999999999974 6999999999999999999999999999
Q ss_pred hhcCCCceEEecccCCCCcCCC--CCceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccC-----------
Q 039445 180 IAGSNERETVVGVIDPRGIKLG--SRKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHD----------- 246 (275)
Q Consensus 180 i~~~~~~~~~i~~~~l~~L~~~--~~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~----------- 246 (275)
+.. .++...+..+++.+|+|. ..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++..
T Consensus 156 i~~-~~~~~~~~~~~~~~llp~~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~IS~~Ql~~fr~l~~~~~~~~~~~~~~ 234 (256)
T cd03120 156 IQY-KGKSKTIPCFNPNTLLPDPLLRDYWVYEGSLTTPPCSEGVTWILFRYPLTISQSQIEEFRRLRTHVKGAELVEGCD 234 (256)
T ss_pred hcc-CCceeeecCCCHHHHCCCcCcCCeEEEeeecCCCCCCCCeEEEEeCCeeecCHHHHHHHHHHHhcccccccccccc
Confidence 876 455556667888888876 478999999999999999999999999999999999999998742
Q ss_pred -CCCCCCCCCCCCCCCeEEEe
Q 039445 247 -DSGTNARPQQPINLRTIKLY 266 (275)
Q Consensus 247 -~~~~N~Rp~Qpln~R~V~~~ 266 (275)
.+.+|+||+||||||.|+.+
T Consensus 235 ~~l~~N~Rp~Qpln~R~v~~~ 255 (256)
T cd03120 235 GLLGDNFRPTQPLSDRVIRAA 255 (256)
T ss_pred ccccCCCCCCCCCCCCEEEec
Confidence 14689999999999999864
No 15
>KOG0382 consensus Carbonic anhydrase [General function prediction only]
Probab=100.00 E-value=1.1e-63 Score=447.76 Aligned_cols=229 Identities=38% Similarity=0.632 Sum_probs=195.9
Q ss_pred CCcccCCCCCCCCCCccccCcCcccCCCCCCCCCceeeCCceeeec-CCCCceeeeec-cceEEEecCceeEEEeeCCCc
Q 039445 33 KEFNYEEEGQRGPSKWGELHKEWSACKKGTMQSPIDLLNERVQVVS-HLGRLKRSYKP-SYATLKNRGHDMMLQWHGGAG 110 (275)
Q Consensus 33 ~~w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~-~l~~l~~~y~~-~~~~l~N~G~tv~v~~~~~~~ 110 (275)
..|.|. ....||..|+.+++ .|+ |++||||||....+.+++ .+.++.++|.. ....+.|+|++..+.+....+
T Consensus 3 ~~~~~~-~~~~gp~~W~~~~~---~~~-g~~QSPIdi~~~~~~~~~~~l~~~~~~~~~~~~~~~~nng~~~~v~~~~~~~ 77 (262)
T KOG0382|consen 3 EFWYYE-KGNKGPEHWGKLYP---EWK-GKRQSPIDIKRSQIVYDPDPLKPLRLSYEYKPCNAVLNNGHSRGVDIMLKGG 77 (262)
T ss_pred ceeEEe-ccccCCccccccCc---CcC-CCccCCccCccceeeecCccccceeeecccCcceEEEeCCceEEEEeecCCC
Confidence 356775 45669999999766 476 999999999999988888 66666666643 456889999666666543333
Q ss_pred eEEEcC----e-EEEeeeeEecC------CCCCccccccccceeeeeeec-----------CCcceEEEEEEEeeCC-CC
Q 039445 111 TLLING----T-EYVLKQCHWHS------PSEHTIDGERFALEAHMVHES-----------QDGKIAVVGIMYKIGR-PD 167 (275)
Q Consensus 111 ~~~~~g----~-~Y~l~q~HFH~------gSEHtidG~~y~~E~HiVh~~-----------~~~~laVl~v~~~~~~-~n 167 (275)
.+.+.| . .|++.|+|||| ||||||||++|+||||+||+| .++|+||||||+++|+ .|
T Consensus 78 ~~~i~gg~l~~~~y~~~q~hfHWg~~~~~GSEHti~g~~f~~ElHlVH~n~~y~~~~eA~~~p~GlAVv~vf~k~g~~~n 157 (262)
T KOG0382|consen 78 KPEITGGPLPGIRYRLEQLHFHWGSPDSKGSEHTINGRRFPAELHLVHWNTKYENFKEALSKPDGLAVVGVFLKIGKEEN 157 (262)
T ss_pred CcceecCCCCCcceeEEEeEeecCCCCCCCCceecCCeecccEEEEEEeccccCCHHHHhcCCCcEEEEEEeecccCCCC
Confidence 334433 3 79999999999 699999999999999999999 5799999999999997 89
Q ss_pred chhHHHHHHHhhhhcCCCceEEecccCCCCcCCC-CCceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccC
Q 039445 168 SLLASISDHLRQIAGSNERETVVGVIDPRGIKLG-SRKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHD 246 (275)
Q Consensus 168 ~~l~~i~~~l~~i~~~~~~~~~i~~~~l~~L~~~-~~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~ 246 (275)
++|++|++.|..|.+ +++.+.+..|+++.|+|. ..+||+|.||||||||+|+|+|+||++|+.||.+||.+||.++.+
T Consensus 158 ~~l~~l~~~L~~I~~-k~~~~~l~~f~~~~llp~~~~~y~tY~GSLTTPPC~E~VtW~V~~~p~~is~~Ql~~~r~l~~~ 236 (262)
T KOG0382|consen 158 PFLSKLTDALKRIKY-KGQSTTLPGFDPSELLPKSTRDYYTYEGSLTTPPCSESVTWTVFREPVTVSREQLEKFRNLLFD 236 (262)
T ss_pred hhHHHHHHHhhcccc-CCcccccCCCCHHHhcCccCCceEEEEeeccCCCCCCCEEEEEcCceeecCHHHHHHHHHHhhC
Confidence 999999999999988 677777777999999887 899999999999999999999999999999999999999999855
Q ss_pred C----CCCCCCCCCCCCCCeEEEeC
Q 039445 247 D----SGTNARPQQPINLRTIKLYR 267 (275)
Q Consensus 247 ~----~~~N~Rp~Qpln~R~V~~~~ 267 (275)
. +.+|+||+||||+|.|+++.
T Consensus 237 ~~~~~~~~N~Rp~Qpln~R~V~~~~ 261 (262)
T KOG0382|consen 237 EEGEPLVNNFRPLQPLNGRVVRASF 261 (262)
T ss_pred cccccccccCCcCcCCCCCeEeccc
Confidence 4 67999999999999999875
No 16
>PLN02179 carbonic anhydrase
Probab=100.00 E-value=1e-63 Score=442.68 Aligned_cols=221 Identities=45% Similarity=0.953 Sum_probs=185.8
Q ss_pred HHHHHHHHHHHHhcC-ccccccCCCCCCcccCCCCCCCCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCceee
Q 039445 8 LLFSCFFLVLLLLSC-PAVSQEVDDEKEFNYEEEGQRGPSKWGELHKEWSACKKGTMQSPIDLLNERVQVVSHLGRLKRS 86 (275)
Q Consensus 8 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~ 86 (275)
+++..+++..+++.+ +..+.+++.+.+|+|..++.+||++|++++++|..|++|++||||||.+..+.... ...|.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Y~~~~~~Gp~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~-~~~l~~~ 87 (235)
T PLN02179 9 FFFVVFFIDLFFPNILLVYAREIGNKPLFTYKQKTEKGPAEWGKLNPQWKVCSTGKYQSPIDLTDERVSLIH-DQALSRH 87 (235)
T ss_pred hhhHHHHHHHHHHHHhhhhcccccCCCCCCcCCCCCCCchhhhhcChhhhhccCCCcCCCEEeecccccccc-CCCcccc
Confidence 444434444444443 34567788999999975578899999999999999999999999999986543211 1346777
Q ss_pred eeccceEEEecCceeEEEeeCCCceEEEcCeEEEeeeeEecCCCCCccccccccceeeeeeecCCcceEEEEEEEeeCCC
Q 039445 87 YKPSYATLKNRGHDMMLQWHGGAGTLLINGTEYVLKQCHWHSPSEHTIDGERFALEAHMVHESQDGKIAVVGIMYKIGRP 166 (275)
Q Consensus 87 y~~~~~~l~N~G~tv~v~~~~~~~~~~~~g~~Y~l~q~HFH~gSEHtidG~~y~~E~HiVh~~~~~~laVl~v~~~~~~~ 166 (275)
|.+...++.|+|||+++.+.++.+.+.++|.+|+|.||||||||||+|||++|||||||||++.++++|||||||++|++
T Consensus 88 y~~~~~~i~N~Ghtv~v~~~~~~~~~~i~g~~Y~L~QfHFH~gSEH~InG~~yp~E~H~VH~n~~g~laVlgvl~~~g~~ 167 (235)
T PLN02179 88 YKPAPAVIQSRGHDVMVSWKGDAGKITIHQTDYKLVQCHWHSPSEHTINGTSYDLELHMVHTSASGKTAVVGVLYKLGEP 167 (235)
T ss_pred cCCccEEEEECCeEEEEEecCCCCeeEecCcEEEEEEEEecCCcceEecccccCeeEEEEEEcCCCCeEEEEEEEecCCC
Confidence 87778899999999999987666688899999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHhhhhcCCCceEEecccCCCCcCCCCCceEEeeccccCCCCccceEEEEeceeecc
Q 039445 167 DSLLASISDHLRQIAGSNERETVVGVIDPRGIKLGSRKYYRYIGSLTTPPCTENVIWTIVRKVRTV 232 (275)
Q Consensus 167 n~~l~~i~~~l~~i~~~~~~~~~i~~~~l~~L~~~~~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~I 232 (275)
|++++++++.+..+.. +...+..+++.+|+|+..+||+|.||||||||+|+|+|+||++|+-+
T Consensus 168 n~~l~~il~~l~~~~~---~~~~~~~l~~~~llp~~~~yy~Y~GSLTTPPC~E~V~WiV~~~p~~~ 230 (235)
T PLN02179 168 DEFLTKLLNGIKGVGK---KEINLGIVDPRDIRFETNNFYRYIGSLTIPPCTEGVIWTVVKRVVWF 230 (235)
T ss_pred CHHHHHHHHhhhcccC---cceeecccCHHHhCcCCCCEEEEecccCCCCCCCceEEEEecCcEEe
Confidence 9999999998877643 23345668888888888899999999999999999999999999854
No 17
>cd03117 alpha_CA_IV_XV_like Carbonic anhydrase alpha, CA_IV, CA_XV, like isozymes. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This subgroup, restricted to animals, contains isozyme IV and similar proteins such as mouse CA XV. Isozymes IV is attached to membranes via a glycosylphosphatidylinositol (GPI) tail. I
Probab=100.00 E-value=3.2e-62 Score=434.35 Aligned_cols=201 Identities=33% Similarity=0.534 Sum_probs=177.0
Q ss_pred CCCCCCceeeCCceeeecCCCCcee-eee--ccceEEEecCceeEEEeeCCCceEEEcC----eEEEeeeeEecC-----
Q 039445 61 GTMQSPIDLLNERVQVVSHLGRLKR-SYK--PSYATLKNRGHDMMLQWHGGAGTLLING----TEYVLKQCHWHS----- 128 (275)
Q Consensus 61 G~~QSPInI~~~~~~~~~~l~~l~~-~y~--~~~~~l~N~G~tv~v~~~~~~~~~~~~g----~~Y~l~q~HFH~----- 128 (275)
|++||||||.+..+.....+.+|.+ +|. +..+++.|+||++++.+.+ .+.++| ..|.|.||||||
T Consensus 1 G~~QSPI~I~~~~~~~~~~l~~L~~~~y~~~~~~~~l~N~G~tv~v~~~~---~~~i~gg~L~~~Y~l~qfHfH~G~~~~ 77 (234)
T cd03117 1 GKRQSPINIVTKKVQYDENLTPFTFTGYDDTTTNWTITNNGHTVQVTLPD---GAKISGGGLPGTYKALQFHFHWGSNGS 77 (234)
T ss_pred CCcCCCEEEcccceEECCCCCcceeccccCCCCceEEEECCeEEEEEecC---CceEeCCCCCCcEEEEEEEEEeCCCCC
Confidence 7899999999887776777888988 675 3678999999999998863 456666 799999999999
Q ss_pred -CCCCccccccccceeeeeeecCC-----------cceEEEEEEEeeC-CCCchhHHHHHHHhhhhcCCCceEEecccCC
Q 039445 129 -PSEHTIDGERFALEAHMVHESQD-----------GKIAVVGIMYKIG-RPDSLLASISDHLRQIAGSNERETVVGVIDP 195 (275)
Q Consensus 129 -gSEHtidG~~y~~E~HiVh~~~~-----------~~laVl~v~~~~~-~~n~~l~~i~~~l~~i~~~~~~~~~i~~~~l 195 (275)
||||+|||++|||||||||++.+ +++|||||||+++ ..|+.++.|++.+..|.. .+....+..+++
T Consensus 78 ~gSEH~idg~~~~~E~HlVH~n~~~~~~~~A~~~~~~laVv~vl~~~~~~~n~~l~~i~~~l~~i~~-~~~~~~~~~~~~ 156 (234)
T cd03117 78 PGSEHTIDGERYPMELHIVHIKESYNSLLEALKDSDGLAVLGFFIEEGEEENTNFDPLISALSNIPQ-KGGSTNLTPFSL 156 (234)
T ss_pred CCCcceeCCeecchheeeeEecCCCCCHHHHhcCCCceEEEEEEEEecCCCCccHHHHHHHHHhccc-CCceeecCCCCH
Confidence 89999999999999999999874 7899999999999 589999999999999876 455555667888
Q ss_pred CCcCCCC--CceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccCC------CCCCCCCCCCCCCCeEEE
Q 039445 196 RGIKLGS--RKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHDD------SGTNARPQQPINLRTIKL 265 (275)
Q Consensus 196 ~~L~~~~--~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~~------~~~N~Rp~Qpln~R~V~~ 265 (275)
.+|+|.. .+||+|.||||||||+|+|+|+||++|++||.+||++||+++... +.+|+||+||+|||.|++
T Consensus 157 ~~llp~~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~l~~N~Rp~Q~ln~R~v~~ 234 (234)
T cd03117 157 RSLLPSVLLTKYYRYNGSLTTPGCNEAVIWTVFEEPIPISRAQLDAFSTVLFFDTDNGQPMVNNFRPVQPLNGRVVYA 234 (234)
T ss_pred HHHCCCcccCCeEEEeccccCCCCcccEEEEEeCCceecCHHHHHHHHHHhcccccCCCcccCCCCCCCCCCCCEEeC
Confidence 8888764 589999999999999999999999999999999999999987532 468999999999999974
No 18
>cd00326 alpha_CA Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues and a fourth conserved histidine plays a potential role in proton transfer.
Probab=100.00 E-value=2.6e-61 Score=426.85 Aligned_cols=203 Identities=38% Similarity=0.637 Sum_probs=182.1
Q ss_pred CCCCCCceeeCCceeeecCCCCceeeeec-cceEEEecCceeEEEeeCCCceEEEcC--eEEEeeeeEecC------CCC
Q 039445 61 GTMQSPIDLLNERVQVVSHLGRLKRSYKP-SYATLKNRGHDMMLQWHGGAGTLLING--TEYVLKQCHWHS------PSE 131 (275)
Q Consensus 61 G~~QSPInI~~~~~~~~~~l~~l~~~y~~-~~~~l~N~G~tv~v~~~~~~~~~~~~g--~~Y~l~q~HFH~------gSE 131 (275)
|++||||||.+..+.....+.+|.+.|.. ..+++.|+|||+++.+.++.+.+.++| .+|+|.|||||| |||
T Consensus 1 G~~QSPI~I~~~~~~~~~~l~~l~~~~~~~~~~~i~N~G~tv~~~~~~~~~~i~~~~l~~~y~l~q~HfH~G~~~~~gSE 80 (227)
T cd00326 1 GKRQSPINIVTSAVVYDPSLPPLNFDYYPTTSLTLVNNGHTVQVNFDDDGGTLSGGGLPGRYKLVQFHFHWGSENSPGSE 80 (227)
T ss_pred CCCcCCeEECccceeECCCCCceeecccCCCceEEEECCeeEEEEecCCCceEeCCCCCCCEEEEEEEEecCCCCCCCCc
Confidence 78999999999777766678888887754 678999999999999876456788888 899999999999 999
Q ss_pred CccccccccceeeeeeecC----------CcceEEEEEEEeeC-CCCchhHHHHHHHhhhhcCCCceEEecccCCCCcCC
Q 039445 132 HTIDGERFALEAHMVHESQ----------DGKIAVVGIMYKIG-RPDSLLASISDHLRQIAGSNERETVVGVIDPRGIKL 200 (275)
Q Consensus 132 HtidG~~y~~E~HiVh~~~----------~~~laVl~v~~~~~-~~n~~l~~i~~~l~~i~~~~~~~~~i~~~~l~~L~~ 200 (275)
|+|||++|||||||||++. ++++|||||||+++ ..|++++.|++.+..+.. .+....+..+++.+|+|
T Consensus 81 H~i~g~~y~~E~H~Vh~~~~~~~~~a~~~~~~laVv~v~~~~~~~~n~~l~~i~~~l~~~~~-~~~~~~~~~~~l~~llp 159 (227)
T cd00326 81 HTIDGKRYPLELHLVHYNSDYYSSEAAKKPGGLAVLGVFFEVGEKENPFLKKILDALPKIKY-KGKETTLPPFDLSDLLP 159 (227)
T ss_pred ceeCCEeccccceEEEECCCCCChhhhccCCCeEEEEEEEEecccCChhHHHHHHHHHhcCc-CCcEeecCCCCHHHHCC
Confidence 9999999999999999998 78999999999999 789999999999998875 45666677889999988
Q ss_pred CC-CceEEeeccccCCCCccceEEEEeceeeccCHHHHHHHHHhccC---CCCCCCCCCCCCCCCeEE
Q 039445 201 GS-RKYYRYIGSLTTPPCTENVIWTIVRKVRTVTREQVKLLRVAVHD---DSGTNARPQQPINLRTIK 264 (275)
Q Consensus 201 ~~-~~yy~Y~GSLTTPPCtE~V~WiV~~~pi~IS~~Ql~~fr~l~~~---~~~~N~Rp~Qpln~R~V~ 264 (275)
.. .+||+|.||||||||+|+|+|+||++|++||.+||+.||+++.. .+.+|+||+||+|||.|+
T Consensus 160 ~~~~~y~~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~f~~l~~~~~~~~~~N~Rp~Q~ln~R~v~ 227 (227)
T cd00326 160 SSLRDYYTYEGSLTTPPCSEGVTWIVFKEPITISKEQLEAFRSLLDREGKPLVNNYRPVQPLNGRVVY 227 (227)
T ss_pred CCcCCEEEEeccCcCCCCccceEEEEeCCceecCHHHHHHHHHHHhcCCCcccCCCCCCCCCCCCeeC
Confidence 77 89999999999999999999999999999999999999998742 256899999999999984
No 19
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=34.90 E-value=9.7 Score=27.18 Aligned_cols=16 Identities=38% Similarity=0.841 Sum_probs=11.9
Q ss_pred CCCccccccccceeee
Q 039445 130 SEHTIDGERFALEAHM 145 (275)
Q Consensus 130 SEHtidG~~y~~E~Hi 145 (275)
-||+|||+.|.++=-|
T Consensus 8 G~h~IdGk~y~v~kDl 23 (65)
T PF09211_consen 8 GEHTIDGKKYYVKKDL 23 (65)
T ss_dssp EEEEETTEEEEESS-E
T ss_pred ccEEECCEEEEecCCh
Confidence 4899999999876443
No 20
>PF06594 HCBP_related: Haemolysin-type calcium binding protein related domain; InterPro: IPR010566 This family consists of a number of bacteria specific domains, which are found in haemolysin-type calcium binding proteins. This family is found in conjunction with IPR001343 from INTERPRO and is often found in multiple copies.
Probab=24.88 E-value=1.3e+02 Score=19.09 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=10.6
Q ss_pred EEEeeeeEecCCC
Q 039445 118 EYVLKQCHWHSPS 130 (275)
Q Consensus 118 ~Y~l~q~HFH~gS 130 (275)
.|.+++|.|.-|+
T Consensus 24 ~~~Ie~i~FaDGt 36 (43)
T PF06594_consen 24 SYRIEQIEFADGT 36 (43)
T ss_pred CCcEeEEEEcCCC
Confidence 6888999998665
No 21
>PHA02614 Major capsid protein VP1; Provisional
Probab=23.69 E-value=1e+02 Score=29.06 Aligned_cols=41 Identities=15% Similarity=0.297 Sum_probs=26.2
Q ss_pred CCCceE-EeeccccCCCCc---cceEEEEece----------eeccCHHHHHHHH
Q 039445 201 GSRKYY-RYIGSLTTPPCT---ENVIWTIVRK----------VRTVTREQVKLLR 241 (275)
Q Consensus 201 ~~~~yy-~Y~GSLTTPPCt---E~V~WiV~~~----------pi~IS~~Ql~~fr 241 (275)
++..|| +|.|-++|||-- -.++=+.+++ -++||...+--|+
T Consensus 213 ENtRYFG~~tGG~~TPPVl~ftNt~TTvLLDENGVGpLCkgd~Lyls~aDi~G~~ 267 (363)
T PHA02614 213 ENTRYFGTYTGGANTPPVLQFTNTSTTVLLDENGVGPLCKGDGLYLSCADICGFF 267 (363)
T ss_pred cCceeeEeecCCCCCCCeEEecCcceEEEEcCCCcccCccCCcEEEEhhhcccce
Confidence 455565 899999999853 3445444443 5677776665543
No 22
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=20.61 E-value=1.6e+02 Score=24.29 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=24.8
Q ss_pred ccccccceeeeeeecCCc------ceEEEEEEEeeCCCCchhHHHHHHH
Q 039445 135 DGERFALEAHMVHESQDG------KIAVVGIMYKIGRPDSLLASISDHL 177 (275)
Q Consensus 135 dG~~y~~E~HiVh~~~~~------~laVl~v~~~~~~~n~~l~~i~~~l 177 (275)
+.+.-.||+|++|.-.+| .+++||++-.. ..=..|+.++..+
T Consensus 79 ~N~~Kt~E~hlih~f~~DFYge~l~~~IvGyiRpe-~nf~slesLi~~I 126 (153)
T KOG3110|consen 79 KNKKKTMELHLIHDFGEDFYGETLKVIIVGYIRPE-LNFDSLESLIEAI 126 (153)
T ss_pred CCcccceeeeeehhcccchhhheeeEEEEEeeccc-cCcchHHHHHHHH
Confidence 445567899999987653 35566654321 1123466666655
No 23
>PF01542 HCV_core: Hepatitis C virus core protein; InterPro: IPR002521 The Hepatitis C virus (HCV) is a small (50 nm in size), enveloped, single-stranded, positive sense RNA virus. It is the only known member of the hepacivirus genus in the family Flaviviridae. There are six major genotypes of the hepatitis C virus, which are identified numerically (e.g., genotype 1, genotype 2, etc.). Although Hepatitis A virus, Hepatitis B virus, and Hepatitis C virus have similar names, because they all cause liver inflammation, these are distinctly different viruses both genetically and clinically. HCV has a positive sense RNA genome that consists of a single open reading frame of 9600 nucleotides. At the 5' and 3' ends of the RNA are the UTR regions that are not translated into proteins but are important to translation and replication of the viral RNA. The 5' UTR has a ribosome binding site (IRES - Internal ribosome entry site) that starts the translation of a 3000 amino acid containing protein that is later cut by cellular and viral proteases into 10 active structural and non-structural smaller proteins. The HCV core protein is located at the N terminus of the polyprotein and is followed by the signal sequence located between the core protein and the E1 envelope glycoprotein. This signal sequence targets the nascent HCV polyprotein to the endoplasmic reticulum (ER), allowing the translocation of E1 to the ER lumen. Cleavage by a signal peptidase in the ER lumen releases the N-terminal end of E1, leaving the 191-amino acids (aa) core protein anchored by its C-terminal signal peptide [, ]. This 191aa polypeptide, also known as p23, is the immature form of the core protein; p23 is further processed by an intramembrane protease, the signal peptide peptidase (SPP), that removes the ER anchor , releasing p21, the N-terminal 179aa mature form of the core protein []. Core protein (p21) is responsible for packaging viral RNA to form a viral nucleocapsid, and it also promotes virion budding []. Two domains have been identified in the mature form of the HCV core protein, based on predicted structural and functional characteristics []. Domain I, corresponding to the N-terminal region of approximately 120 aa, is a highly basic domain that is probably involved in the recruitment of viral RNA during particle morphogenesis. Domain II, located between aa 120 and aa 175, is a hydrophobic region predicted to form one or two alpha-helices that are probably involved in the association of core with the ER membrane and lipid droplets. This entry represents domain II and domain III (ER anchor sequence) of the core protein p23. ; GO: 0005198 structural molecule activity
Probab=20.58 E-value=83 Score=22.70 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhcCccc
Q 039445 8 LLFSCFFLVLLLLSCPAV 25 (275)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (275)
-+|++|++.++.|.+++.
T Consensus 57 csfsIFllaLlSc~~~p~ 74 (75)
T PF01542_consen 57 CSFSIFLLALLSCLTVPA 74 (75)
T ss_pred ccHHHHHHHHHHhccccC
Confidence 579999999999988743
Done!