BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>039446
PNHSSVSASNIITSLHLNKQMGKHQSRSLMQGHLKKAVKKLHMILSRIKLSKWNLASICR
AGFSQSRRSLSFNDRLGLQYCIVDRDPDEGSSVRVLQRTKSCAYDGDDDIDRRAEIFITN
FRRQLLYERQVSLELRYRRGNSFDEY

High Scoring Gene Products

Symbol, full name Information P value
AT5G57510 protein from Arabidopsis thaliana 5.1e-19

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039446
        (146 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2174537 - symbol:AT5G57510 "AT5G57510" species...   228  5.1e-19   1


>TAIR|locus:2174537 [details] [associations]
            symbol:AT5G57510 "AT5G57510" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0071456 "cellular response to hypoxia"
            evidence=IEP] [GO:0010200 "response to chitin" evidence=RCA]
            EMBL:CP002688 GO:GO:0071456 EMBL:AB011482 InterPro:IPR008480
            Pfam:PF05553 EMBL:DQ447084 IPI:IPI00529248 RefSeq:NP_200559.1
            UniGene:At.65686 EnsemblPlants:AT5G57510.1 GeneID:835855
            KEGG:ath:AT5G57510 TAIR:At5g57510 InParanoid:Q9FKM0 OMA:EMFIANF
            PhylomeDB:Q9FKM0 ProtClustDB:CLSN2719505 ArrayExpress:Q9FKM0
            Genevestigator:Q9FKM0 Uniprot:Q9FKM0
        Length = 130

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 56/124 (45%), Positives = 74/124 (59%)

Query:    21 MGKHQSRSLMQGHLKKAVKKLHMILSRIKL-SKWNLASICRAGFSQSRRSLSFNDRLGLQ 79
             M K +  SL+   L++AV K+  +LS  K+ S W L  +  +  S S   LSFNDR GL 
Sbjct:     1 MTKSKDGSLLN-RLRQAVNKVKFVLS-FKINSLWGLVPMLGSSSSSSSLRLSFNDRPGLT 58

Query:    80 YCIVDRDPDE-GSSVRVLQRTKSCAYDGDDDIDRRAEIFITNFRRQLLYERQVSLELRYR 138
                 + +PD  GSS   L RT S     D+DID +AE+FI NF RQL  ERQ+SLEL+Y 
Sbjct:    59 AAFTENEPDSTGSSRGALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLELKYC 118

Query:   139 RGNS 142
             +GN+
Sbjct:   119 QGNN 122


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.387    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      146       146   0.00079  103 3  11 22  0.42    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  577 (61 KB)
  Total size of DFA:  138 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.72u 0.17s 13.89t   Elapsed:  00:00:01
  Total cpu time:  13.72u 0.17s 13.89t   Elapsed:  00:00:01
  Start:  Sat May 11 02:01:30 2013   End:  Sat May 11 02:01:31 2013

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