Query 039446
Match_columns 146
No_of_seqs 29 out of 31
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 16:34:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039446.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039446hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m3w_A H10H24; four-helix bund 43.9 14 0.00048 22.3 2.1 23 107-129 3-25 (32)
2 1q40_B MEX67, mRNA export fact 22.3 54 0.0018 25.8 2.7 30 106-135 9-38 (219)
3 2ejx_A ST0812; arcaea, unknown 20.0 78 0.0027 24.1 3.0 20 110-129 115-134 (139)
4 1cr5_A SEC18P (residues 22 - 2 17.8 26 0.00087 26.5 -0.1 32 106-138 111-142 (189)
5 1qcs_A N-ethylmaleimide sensit 17.1 26 0.0009 26.8 -0.2 30 108-138 116-145 (211)
6 1jkg_B TAP; NTF2-like domain, 16.2 94 0.0032 24.3 2.8 32 104-135 8-40 (250)
7 2gom_A Fibrinogen-binding prot 14.9 38 0.0013 22.9 0.2 17 122-138 42-58 (61)
8 2lyy_A Uncharacterized protein 14.4 78 0.0027 22.5 1.7 33 105-137 2-38 (96)
9 3bhp_A UPF0291 protein YNZC; N 14.2 92 0.0032 20.7 2.0 12 115-126 35-46 (60)
10 1xly_A SHE2P, SHE2, YKL130C; b 12.3 1.2E+02 0.0042 25.1 2.5 43 16-60 29-74 (234)
No 1
>1m3w_A H10H24; four-helix bundle, heme binding, maquette, heme binding protein, electron transport, de novo protein; 2.80A {Synthetic} SCOP: k.8.1.1
Probab=43.92 E-value=14 Score=22.32 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=19.2
Q ss_pred CcchhHHHHHHHHHHHHHHhHhh
Q 039446 107 DDDIDRRAEIFITNFRRQLLYER 129 (146)
Q Consensus 107 d~dID~rAe~FIanFr~QlklqR 129 (146)
+..|=+.-|+|.++|.+-|++.-
T Consensus 3 ggeiwklheeflkkfeellklhe 25 (32)
T 1m3w_A 3 GGEIWKLHEEFLKKFEELLKLHE 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHH
Confidence 35688899999999999988753
No 2
>1q40_B MEX67, mRNA export factor MEX67; NTF2-fold, nuclear export, translation; 1.95A {Candida albicans} SCOP: d.17.4.2
Probab=22.25 E-value=54 Score=25.78 Aligned_cols=30 Identities=27% Similarity=0.279 Sum_probs=21.0
Q ss_pred CCcchhHHHHHHHHHHHHHHhHhhhhccce
Q 039446 106 GDDDIDRRAEIFITNFRRQLLYERQVSLEL 135 (146)
Q Consensus 106 ~d~dID~rAe~FIanFr~QlklqRQ~SLqL 135 (146)
.++++..-|++||.+||.-.-=.|+.-+.|
T Consensus 9 ~~~~~~~~~~~Fl~~Yy~~fDsdR~~L~~l 38 (219)
T 1q40_B 9 QDEDSRNLATNFIANYLKLWDANRSELMIL 38 (219)
T ss_dssp ----CHHHHHHHHHHHHHHHHSCGGGGGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHccCHHHHHHh
Confidence 467899999999999998776677665544
No 3
>2ejx_A ST0812; arcaea, unknown function, NPPSFA; 1.79A {Sulfolobus tokodaii str}
Probab=19.95 E-value=78 Score=24.09 Aligned_cols=20 Identities=15% Similarity=0.265 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHhHhh
Q 039446 110 IDRRAEIFITNFRRQLLYER 129 (146)
Q Consensus 110 ID~rAe~FIanFr~QlklqR 129 (146)
|+++-+.|.+||-+-+++||
T Consensus 115 i~k~i~~f~k~ldE~IRlER 134 (139)
T 2ejx_A 115 VSSNLDRLAENIDEIIRLER 134 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHhh
Confidence 88999999999999999998
No 4
>1cr5_A SEC18P (residues 22 - 210); double-PSI beta barrel, vesicle fusion, endocytosis/exocytosis complex; 2.30A {Saccharomyces cerevisiae} SCOP: b.52.2.3 d.31.1.1
Probab=17.82 E-value=26 Score=26.54 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=24.0
Q ss_pred CCcchhHHHHHHHHHHHHHHhHhhhhccceeee
Q 039446 106 GDDDIDRRAEIFITNFRRQLLYERQVSLELRYR 138 (146)
Q Consensus 106 ~d~dID~rAe~FIanFr~QlklqRQ~SLqLrY~ 138 (146)
..=|-|+.|.+|+++|..|+--.-|.-+ +.|+
T Consensus 111 ~~~D~dela~~f~~~F~~Qift~gQ~l~-f~~~ 142 (189)
T 1cr5_A 111 TVFDQDELAKQFVRCYESQIFSPTQYLI-MEFQ 142 (189)
T ss_dssp -CCCHHHHHHHHHHHHTTCEECTTCEEE-EEET
T ss_pred CccCHHHHHHHHHHHHcCCCCCCCCEEE-EEEC
Confidence 3457889999999999999876666544 5554
No 5
>1qcs_A N-ethylmaleimide sensitive factor (NSF-N); double-PSI beta barrel alpha beta roll, fusion protein; 1.90A {Cricetulus griseus} SCOP: b.52.2.3 d.31.1.1 PDB: 1qdn_A
Probab=17.12 E-value=26 Score=26.83 Aligned_cols=30 Identities=27% Similarity=0.366 Sum_probs=23.5
Q ss_pred cchhHHHHHHHHHHHHHHhHhhhhccceeee
Q 039446 108 DDIDRRAEIFITNFRRQLLYERQVSLELRYR 138 (146)
Q Consensus 108 ~dID~rAe~FIanFr~QlklqRQ~SLqLrY~ 138 (146)
=|-|+.|.+|+++|..|+--.-|.-+ +.|+
T Consensus 116 ~D~dela~~f~~~F~~Qift~gQ~l~-f~~~ 145 (211)
T 1qcs_A 116 YDTDKMAAEFIQQFNNQAFSVGQQLV-FSFN 145 (211)
T ss_dssp EEHHHHHHHHHHHHTTCEEETTCEEE-EEET
T ss_pred cCHHHHHHHHHHHHcCCCCCCCCEEE-EEEC
Confidence 57889999999999999876666544 5554
No 6
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=16.16 E-value=94 Score=24.26 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=25.4
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhHh-hhhccce
Q 039446 104 YDGDDDIDRRAEIFITNFRRQLLYE-RQVSLEL 135 (146)
Q Consensus 104 ~~~d~dID~rAe~FIanFr~Qlklq-RQ~SLqL 135 (146)
+=.++++..-|++|+..||.-.-=. |+.-+.+
T Consensus 8 f~~~~~~~~~~~~Fv~~Yy~~fD~~~R~~L~~l 40 (250)
T 1jkg_B 8 YFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDA 40 (250)
T ss_dssp BCSSHHHHHHHHHHHHHHHHHHTSSCGGGGGGT
T ss_pred ccCCHHHHHHHHHHHHHHHHHHCcCcHHHHHHh
Confidence 4456789999999999999888776 8865543
No 7
>2gom_A Fibrinogen-binding protein; three-helix closed bundle with LEFT-hand twist, cell adhesio complex; 1.25A {Staphylococcus aureus} SCOP: a.7.17.1 PDB: 2gox_B 3d5s_C 3d5r_C
Probab=14.88 E-value=38 Score=22.95 Aligned_cols=17 Identities=6% Similarity=0.258 Sum_probs=13.9
Q ss_pred HHHHhHhhhhccceeee
Q 039446 122 RRQLLYERQVSLELRYR 138 (146)
Q Consensus 122 r~QlklqRQ~SLqLrY~ 138 (146)
|+.++|||||-+-|.|.
T Consensus 42 ~~K~~LQ~~ID~VLK~~ 58 (61)
T 2gom_A 42 VKKMVLQERIDNVLKQG 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 67789999998888774
No 8
>2lyy_A Uncharacterized protein; DUF3144, PF11342, structural genomics, unknown function; NMR {Shewanella oneidensis}
Probab=14.36 E-value=78 Score=22.52 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=22.5
Q ss_pred CCCcchhHHHHHHHHHHHHHHhH---h-hhhccceee
Q 039446 105 DGDDDIDRRAEIFITNFRRQLLY---E-RQVSLELRY 137 (146)
Q Consensus 105 ~~d~dID~rAe~FIanFr~Qlkl---q-RQ~SLqLrY 137 (146)
+.|+..-+||++||+==-+|++= . =++|--|.|
T Consensus 2 ~~d~~F~~rAD~fI~lAN~q~~~~e~~~g~Vsas~ly 38 (96)
T 2lyy_A 2 NNENAFYARATELIKLANQQNQNTEIQTGEVSASFMW 38 (96)
T ss_dssp CSSSSCHHHHHHHHHHHHHHHTSTTSCHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhhcccCcccchHHHHHHH
Confidence 45678889999999877777752 2 245554444
No 9
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=14.19 E-value=92 Score=20.74 Aligned_cols=12 Identities=17% Similarity=0.551 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHh
Q 039446 115 EIFITNFRRQLL 126 (146)
Q Consensus 115 e~FIanFr~Qlk 126 (146)
.++|++||.+++
T Consensus 35 ~eYl~~fR~~~r 46 (60)
T 3bhp_A 35 QEYLKGFRSSMK 46 (60)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 578999998887
No 10
>1xly_A SHE2P, SHE2, YKL130C; basic helical hairpin, five helix bundle, dimer, RNA- binding protein, RNA binding protein; 1.95A {Saccharomyces cerevisiae} SCOP: a.232.1.1
Probab=12.34 E-value=1.2e+02 Score=25.07 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=31.5
Q ss_pred hhhhhhccccCccchh---hHHHHHHHHHHHhhhccccchhhhhhhhh
Q 039446 16 HLNKQMGKHQSRSLMQ---GHLKKAVKKLHMILSRIKLSKWNLASICR 60 (146)
Q Consensus 16 ~~~~~mg~~~~~~slL---g~Lr~AVkKv~flL~sf~~~~W~lasi~~ 60 (146)
-|||-.|-+++-++|- ..|-+-|||+||.= =++..|+++.++-
T Consensus 29 ~LNk~I~~lRrvStLrfER~tLIKyVKKLRF~n--d~L~s~~~~~~~~ 74 (234)
T 1xly_A 29 VLNKFISHLRRVATLRFERTTLIKFVKKLRFYN--DSVLSYNASEFIN 74 (234)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHH--HHHHHCCGGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhHHHhhh
Confidence 3899999999866552 35677899999975 2347788776664
Done!