Query 039446
Match_columns 146
No_of_seqs 29 out of 31
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 16:34:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039446.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039446hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cr5a2 d.31.1.1 (A:108-210) C 47.4 2.4 0.00018 28.6 0.6 33 105-138 24-56 (103)
2 d1qcsa2 d.31.1.1 (A:86-201) C- 44.2 2.9 0.00021 28.8 0.6 33 105-138 24-56 (116)
3 d2pcsa1 d.129.3.10 (A:1-147) H 22.2 29 0.0021 20.9 2.6 17 109-125 128-144 (147)
4 d2gsva1 a.23.7.1 (A:3-69) Hypo 19.7 28 0.002 22.4 2.1 13 115-127 6-18 (67)
5 d1rp3a2 a.4.13.2 (A:164-234) S 19.4 31 0.0023 19.5 2.1 28 17-46 43-70 (71)
6 d1jkgb_ d.17.4.2 (B:) NTF2-lik 14.7 49 0.0036 23.5 2.7 32 104-135 8-40 (186)
7 d1ej5a_ a.68.1.1 (A:) Wiscott- 13.9 33 0.0024 23.4 1.4 19 107-125 37-56 (107)
8 d1e7la1 a.140.4.1 (A:104-157) 11.8 57 0.0041 20.1 2.0 16 110-126 35-50 (54)
9 d1q2oa_ d.174.1.1 (A:) Nitric 9.9 60 0.0044 26.7 2.0 21 107-127 56-76 (416)
10 d2gy9t1 a.7.6.1 (T:4-86) Ribos 9.9 62 0.0045 20.3 1.7 19 27-45 17-35 (83)
No 1
>d1cr5a2 d.31.1.1 (A:108-210) C-terminal domain of NSF-N, NSF-Nc {Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932]}
Probab=47.37 E-value=2.4 Score=28.62 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=22.2
Q ss_pred CCCcchhHHHHHHHHHHHHHHhHhhhhccceeee
Q 039446 105 DGDDDIDRRAEIFITNFRRQLLYERQVSLELRYR 138 (146)
Q Consensus 105 ~~d~dID~rAe~FIanFr~QlklqRQ~SLqLrY~ 138 (146)
+..=|=|+.|.+||.+|..|.-=-=|.-+ ..|+
T Consensus 24 ~~p~D~Dela~~F~~~F~~Q~ft~gQ~l~-f~f~ 56 (103)
T d1cr5a2 24 STVFDQDELAKQFVRCYESQIFSPTQYLI-MEFQ 56 (103)
T ss_dssp --CCCHHHHHHHHHHHHTTCEECTTCEEE-EEET
T ss_pred CCcccHHHHHHHHHHHhcCCCCCCCcEEE-EEEC
Confidence 45567899999999999998754444333 4444
No 2
>d1qcsa2 d.31.1.1 (A:86-201) C-terminal domain of NSF-N, NSF-Nc {Hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=44.21 E-value=2.9 Score=28.77 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=24.3
Q ss_pred CCCcchhHHHHHHHHHHHHHHhHhhhhccceeee
Q 039446 105 DGDDDIDRRAEIFITNFRRQLLYERQVSLELRYR 138 (146)
Q Consensus 105 ~~d~dID~rAe~FIanFr~QlklqRQ~SLqLrY~ 138 (146)
++.=|-|+.|.+||.+|..|+--.=|.-+ ..|+
T Consensus 24 ~~p~D~Dela~~F~~~F~~Qift~gQ~l~-f~f~ 56 (116)
T d1qcsa2 24 SNPYDTDKMAAEFIQQFNNQAFSVGQQLV-FSFN 56 (116)
T ss_dssp CCEEEHHHHHHHHHHHHTTCEEETTCEEE-EEET
T ss_pred CCCcCHHHHHHHHHHHhCCCCcCCCcEEE-EEeC
Confidence 34458899999999999998765555444 5554
No 3
>d2pcsa1 d.129.3.10 (A:1-147) Hypothetical protein GKP20 {Geobacillus kaustophilus [TaxId: 1462]}
Probab=22.21 E-value=29 Score=20.94 Aligned_cols=17 Identities=6% Similarity=0.132 Sum_probs=12.6
Q ss_pred chhHHHHHHHHHHHHHH
Q 039446 109 DIDRRAEIFITNFRRQL 125 (146)
Q Consensus 109 dID~rAe~FIanFr~Ql 125 (146)
-.++.+++|++||.+.+
T Consensus 128 ~~~~~~~~f~~~~~~~l 144 (147)
T d2pcsa1 128 VAKLLISDFFKKIQKEI 144 (147)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44677888888888765
No 4
>d2gsva1 a.23.7.1 (A:3-69) Hypothetical protein YvfG {Bacillus subtilis [TaxId: 1423]}
Probab=19.66 E-value=28 Score=22.41 Aligned_cols=13 Identities=23% Similarity=0.531 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhH
Q 039446 115 EIFITNFRRQLLY 127 (146)
Q Consensus 115 e~FIanFr~Qlkl 127 (146)
+-||+||++.|.+
T Consensus 6 ~~fi~Nf~~~i~m 18 (67)
T d2gsva1 6 PYFIENLKQHIEM 18 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6799999999875
No 5
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=19.35 E-value=31 Score=19.47 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=22.2
Q ss_pred hhhhhccccCccchhhHHHHHHHHHHHhhh
Q 039446 17 LNKQMGKHQSRSLMQGHLKKAVKKLHMILS 46 (146)
Q Consensus 17 ~~~~mg~~~~~~slLg~Lr~AVkKv~flL~ 46 (146)
+.+.||... ..+-.++.+|.++++-+|.
T Consensus 43 IA~~lgis~--~tv~~~~~ra~~~Lr~~L~ 70 (71)
T d1rp3a2 43 VAKILETSV--SRVSQLKAKALERLREMLS 70 (71)
T ss_dssp HHHHTTSCH--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCH--HHHHHHHHHHHHHHHHHcc
Confidence 456677666 6688999999999998873
No 6
>d1jkgb_ d.17.4.2 (B:) NTF2-like domain of Tip associating protein, TAP {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.66 E-value=49 Score=23.47 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=26.0
Q ss_pred CCCCcchhHHHHHHHHHHHHHHhH-hhhhccce
Q 039446 104 YDGDDDIDRRAEIFITNFRRQLLY-ERQVSLEL 135 (146)
Q Consensus 104 ~~~d~dID~rAe~FIanFr~Qlkl-qRQ~SLqL 135 (146)
+=++++|-..++.|+++|+.---= .||..+++
T Consensus 8 ff~~~~~~~lv~~Fl~~yf~~yDs~dR~~Ll~~ 40 (186)
T d1jkgb_ 8 YFGTENLKSLVLHFLQQYYAIYDSGDRQGLLDA 40 (186)
T ss_dssp BCSSHHHHHHHHHHHHHHHHHHTSSCGGGGGGT
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCcCHHHHHHh
Confidence 556789999999999999988775 68876643
No 7
>d1ej5a_ a.68.1.1 (A:) Wiscott-Aldrich syndrome protein, WASP, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.90 E-value=33 Score=23.38 Aligned_cols=19 Identities=16% Similarity=0.350 Sum_probs=15.5
Q ss_pred Ccch-hHHHHHHHHHHHHHH
Q 039446 107 DDDI-DRRAEIFITNFRRQL 125 (146)
Q Consensus 107 d~dI-D~rAe~FIanFr~Ql 125 (146)
++|+ |..+-.||-+|+++=
T Consensus 37 k~~lkd~et~~~I~~Fiek~ 56 (107)
T d1ej5a_ 37 EAQLTDAETSKLIYDFIEDQ 56 (107)
T ss_dssp HHHHSCHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHc
Confidence 4567 889999999999753
No 8
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=11.84 E-value=57 Score=20.12 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHh
Q 039446 110 IDRRAEIFITNFRRQLL 126 (146)
Q Consensus 110 ID~rAe~FIanFr~Qlk 126 (146)
-|.+| +.|++|++|++
T Consensus 35 ~dtk~-el~~kf~KQ~~ 50 (54)
T d1e7la1 35 SDTKT-QLIASFKKQLR 50 (54)
T ss_dssp TCCHH-HHHHHHHHHHH
T ss_pred hhHHH-HHHHHHHHHHH
Confidence 34454 57999999986
No 9
>d1q2oa_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=9.95 E-value=60 Score=26.74 Aligned_cols=21 Identities=14% Similarity=0.268 Sum_probs=18.2
Q ss_pred CcchhHHHHHHHHHHHHHHhH
Q 039446 107 DDDIDRRAEIFITNFRRQLLY 127 (146)
Q Consensus 107 d~dID~rAe~FIanFr~Qlkl 127 (146)
-|++-..|++||..||..++.
T Consensus 56 ~e~ll~eA~~Fi~q~y~e~~~ 76 (416)
T d1q2oa_ 56 AEQLLSQARDFINQYYSSIKR 76 (416)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhhCc
Confidence 468999999999999998764
No 10
>d2gy9t1 a.7.6.1 (T:4-86) Ribosomal protein S20 {Escherichia coli [TaxId: 562]}
Probab=9.90 E-value=62 Score=20.31 Aligned_cols=19 Identities=11% Similarity=0.210 Sum_probs=16.4
Q ss_pred ccchhhHHHHHHHHHHHhh
Q 039446 27 RSLMQGHLKKAVKKLHMIL 45 (146)
Q Consensus 27 ~~slLg~Lr~AVkKv~flL 45 (146)
|.+..+.+|++||||.-.+
T Consensus 17 N~~~kS~~rT~iKk~~~ai 35 (83)
T d2gy9t1 17 NASRRSMMRTFIKKVYAAI 35 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999877
Done!