BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039447
         (307 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9QUS4|HEY2_MOUSE Hairy/enhancer-of-split related with YRPW motif protein 2 OS=Mus
           musculus GN=Hey2 PE=1 SV=1
          Length = 339

 Score = 33.1 bits (74), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 41/88 (46%)

Query: 174 EETATRTQKEHRTNPGIPKSSPSHSIGIRMRANSPRIASKKLQAHARKSISSNTRSKSSN 233
           EET + +  +   + G   + P H+    MR+NSP   S+ +    R+ I    R    N
Sbjct: 6   EETTSESDLDETIDVGSENNYPGHATSSVMRSNSPTTTSQIMARKKRRGIIEKRRRDRIN 65

Query: 234 KSISESFVVVKSSFDPQRDFRESMVEMI 261
            S+SE   +V ++F+ Q   +    E++
Sbjct: 66  NSLSELRRLVPTAFEKQGSAKLEKAEIL 93


>sp|Q11UM1|RL32_CYTH3 50S ribosomal protein L32 OS=Cytophaga hutchinsonii (strain ATCC
           33406 / NCIMB 9469) GN=rpmF PE=3 SV=1
          Length = 61

 Score = 32.7 bits (73), Expect = 3.5,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 85  HPSRKSSKKKNPKRKTIYKPSSRHFPSSINCSS 117
           HP RK SK +  KR+T YK  +  F    NCS+
Sbjct: 3   HPKRKISKTRRDKRRTHYKAVASQFVECSNCSA 35


>sp|P21414|POL_GALV Pol polyprotein OS=Gibbon ape leukemia virus GN=pol PE=3 SV=1
          Length = 1165

 Score = 32.0 bits (71), Expect = 6.0,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 4/72 (5%)

Query: 147 PPILTKPTKLHEKSTEATK-SRTRSSLKEETATRTQKEHRTNPGIPKSSPSHSIGI---R 202
           PP +  P  L    +EAT   R    L EET TR   E +  PG+P      S  I   +
Sbjct: 590 PPAVLNPATLLPVESEATPVHRCSEILAEETGTRRDLEDQPLPGVPTWYTDGSSFITEGK 649

Query: 203 MRANSPRIASKK 214
            RA +P +  K+
Sbjct: 650 RRAGAPIVDGKR 661


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.127    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 112,061,889
Number of Sequences: 539616
Number of extensions: 4538868
Number of successful extensions: 21581
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 183
Number of HSP's that attempted gapping in prelim test: 20769
Number of HSP's gapped (non-prelim): 879
length of query: 307
length of database: 191,569,459
effective HSP length: 117
effective length of query: 190
effective length of database: 128,434,387
effective search space: 24402533530
effective search space used: 24402533530
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)