Query 039447
Match_columns 307
No_of_seqs 127 out of 235
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 16:35:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039447.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039447hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nsza1 a.118.1.14 (A:322-450) 68.7 1.8 0.00013 33.4 3.4 48 249-298 2-49 (129)
2 d1ug3a1 a.118.1.14 (A:1235-142 43.6 8.9 0.00065 30.8 3.7 47 251-299 7-53 (193)
3 d2qdya1 d.149.1.1 (A:10-206) I 26.7 31 0.0023 28.9 4.4 52 246-297 6-58 (197)
4 d1ugpa_ d.149.1.1 (A:) Cobalt- 26.5 23 0.0017 29.9 3.5 44 254-297 20-64 (203)
5 d1v29a_ d.149.1.1 (A:) Cobalt- 24.6 21 0.0016 30.0 3.0 50 248-297 10-63 (203)
6 d1t3ta1 a.5.10.1 (A:153-220) F 21.6 80 0.0058 21.9 5.2 47 254-301 16-63 (68)
7 d1v29b_ b.34.4.4 (B:) Cobalt-c 20.5 63 0.0046 27.0 5.3 42 247-288 70-111 (229)
8 d1or7a2 a.177.1.1 (A:-1-111) S 16.3 89 0.0065 21.6 4.6 38 267-304 19-65 (113)
9 d2fj6a1 a.60.15.1 (A:1-74) Hyp 15.5 42 0.0031 24.0 2.5 51 246-302 16-67 (74)
10 d3c8ya2 d.15.4.2 (A:1-126) Fe- 14.1 76 0.0055 24.1 3.8 46 234-280 64-117 (126)
No 1
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=68.66 E-value=1.8 Score=33.35 Aligned_cols=48 Identities=17% Similarity=0.223 Sum_probs=36.7
Q ss_pred hHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCCcchhHHHHHHHHH
Q 039447 249 PQRDFRESMVEMIVENNLRGSQDLEDLLACYFSLNSNEYHEVIVKAFEQV 298 (307)
Q Consensus 249 Py~DFR~SM~EMI~e~~i~~~~dLeeLL~CYLsLNs~~~H~~Iv~AF~di 298 (307)
|-..+++.|..||.|-- ...|++|.+.|.-.||.+.+|..+|.....+
T Consensus 2 pv~~l~kk~~~ll~EY~--~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~ 49 (129)
T d2nsza1 2 PVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIVM 49 (129)
T ss_dssp CCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 44567888999998753 4678999999999999998777666554443
No 2
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.63 E-value=8.9 Score=30.77 Aligned_cols=47 Identities=15% Similarity=0.168 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCCcchhHHHHHHHHHH
Q 039447 251 RDFRESMVEMIVENNLRGSQDLEDLLACYFSLNSNEYHEVIVKAFEQVW 299 (307)
Q Consensus 251 ~DFR~SM~EMI~e~~i~~~~dLeeLL~CYLsLNs~~~H~~Iv~AF~diw 299 (307)
+||++-+..+|.|-= ...|+.|.+.|.=.||.+.+|..+|...+..-
T Consensus 7 ee~~kk~~~il~Ey~--~~~D~~Ea~~~l~el~~p~~~~~~V~~~i~~~ 53 (193)
T d1ug3a1 7 EELEKKSKAIIEEYL--HLNDMKEAVQCVQELASPSLLFIFVRHGVEST 53 (193)
T ss_dssp HHHHHHHHHHHHHHH--HHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--hCCCHHHHHHHHHHcCCchhHHHHHHHHHHHH
Confidence 588888888887631 23478899999999999988877776655443
No 3
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=26.74 E-value=31 Score=28.88 Aligned_cols=52 Identities=12% Similarity=0.107 Sum_probs=40.1
Q ss_pred cCChHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhc-CCCcchhHHHHHHHH
Q 039447 246 SFDPQRDFRESMVEMIVENNLRGSQDLEDLLACYFSL-NSNEYHEVIVKAFEQ 297 (307)
Q Consensus 246 S~DPy~DFR~SM~EMI~e~~i~~~~dLeeLL~CYLsL-Ns~~~H~~Iv~AF~d 297 (307)
..+|..+=-+.+++++.|+|+.+.+++..++..|-.= .+..--++|-+|.+|
T Consensus 6 ~~~~i~~RvkALe~lLieKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~D 58 (197)
T d2qdya1 6 AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTD 58 (197)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhCC
Confidence 4578888889999999999999999999999999765 333334455555444
No 4
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=26.50 E-value=23 Score=29.89 Aligned_cols=44 Identities=16% Similarity=0.322 Sum_probs=35.0
Q ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHh-cCCCcchhHHHHHHHH
Q 039447 254 RESMVEMIVENNLRGSQDLEDLLACYFS-LNSNEYHEVIVKAFEQ 297 (307)
Q Consensus 254 R~SM~EMI~e~~i~~~~dLeeLL~CYLs-LNs~~~H~~Iv~AF~d 297 (307)
.+.+++.+.|+|+.+.+++..++..|-. +.+..=-++|-+|.+|
T Consensus 20 vkAle~lLieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~D 64 (203)
T d1ugpa_ 20 VKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTD 64 (203)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCC
Confidence 4567888889999999999999999997 5665555666666554
No 5
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=24.62 E-value=21 Score=30.04 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=37.7
Q ss_pred ChHHHH---HHHHHHHHHhCCCCChhhHHHHHHHHHh-cCCCcchhHHHHHHHH
Q 039447 248 DPQRDF---RESMVEMIVENNLRGSQDLEDLLACYFS-LNSNEYHEVIVKAFEQ 297 (307)
Q Consensus 248 DPy~DF---R~SM~EMI~e~~i~~~~dLeeLL~CYLs-LNs~~~H~~Iv~AF~d 297 (307)
.|..|| -+.+++.+.|+|+.+.++|.+++..|-+ +++..==++|-+|.+|
T Consensus 10 ~~~s~~e~rv~ALe~LLieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~D 63 (203)
T d1v29a_ 10 RPQSFWEARAKALESLLIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTD 63 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTC
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcC
Confidence 466664 4567788889999999999999999997 4666555666665443
No 6
>d1t3ta1 a.5.10.1 (A:153-220) FGAM synthase PurL, linker domain {Salmonella typhimurium [TaxId: 90371]}
Probab=21.60 E-value=80 Score=21.92 Aligned_cols=47 Identities=15% Similarity=0.310 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCC-ChhhHHHHHHHHHhcCCCcchhHHHHHHHHHHHH
Q 039447 254 RESMVEMIVENNLR-GSQDLEDLLACYFSLNSNEYHEVIVKAFEQVWLD 301 (307)
Q Consensus 254 R~SM~EMI~e~~i~-~~~dLeeLL~CYLsLNs~~~H~~Iv~AF~diw~~ 301 (307)
.+.+++...+.|+. +.+||+-|...|-.++-.-. ++=+..|.++|.+
T Consensus 16 ~~~L~~~n~~~gLaL~~~e~~~i~~~f~~~~R~PT-d~EL~~~aQ~nSE 63 (68)
T d1t3ta1 16 RQALIDANLRLGLALAEDEIDYLQEAFTKLGRNPN-DIELYMFAQANSE 63 (68)
T ss_dssp THHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSCCB-HHHHHHHHHHTSH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHhhhhhh
Confidence 35567777888884 88899999999999876544 7778899999964
No 7
>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=20.53 E-value=63 Score=26.98 Aligned_cols=42 Identities=10% Similarity=0.166 Sum_probs=35.3
Q ss_pred CChHHHHHHHHHHHHHhCCCCChhhHHHHHHHHHhcCCCcch
Q 039447 247 FDPQRDFRESMVEMIVENNLRGSQDLEDLLACYFSLNSNEYH 288 (307)
Q Consensus 247 ~DPy~DFR~SM~EMI~e~~i~~~~dLeeLL~CYLsLNs~~~H 288 (307)
.+=|+-+...|+.++.++|+.+.+||++-.+.+..--....|
T Consensus 70 ~sYYe~Wl~ale~lLvekG~it~~EL~~r~~~~~a~p~~~~~ 111 (229)
T d1v29b_ 70 SSYYGHWIATVAYNLLETGVLDEKELEDRTQAFMEKPDTKIQ 111 (229)
T ss_dssp SCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCTTCCCC
T ss_pred CCHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcccCCccccc
Confidence 346888999999999999999999999999999886544433
No 8
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=16.27 E-value=89 Score=21.60 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=25.8
Q ss_pred CChhhHHHHHHHH---------HhcCCCcchhHHHHHHHHHHHHhhc
Q 039447 267 RGSQDLEDLLACY---------FSLNSNEYHEVIVKAFEQVWLDITN 304 (307)
Q Consensus 267 ~~~~dLeeLL~CY---------LsLNs~~~H~~Iv~AF~diw~~L~~ 304 (307)
.+.+.+++|+..| --++..+--+++.++|..||..+..
T Consensus 19 Gd~~Af~~l~~~y~~~l~~~~~~~~~~~daeDl~Qe~~l~~~~~~~~ 65 (113)
T d1or7a2 19 GDQKAFNLLVVRYQHKVASLVSRYVPSGDVPDVVQEAFIKAYRALDS 65 (113)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHHHHHHGGG
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhccc
Confidence 4556666666555 2345556667888999999988754
No 9
>d2fj6a1 a.60.15.1 (A:1-74) Hypothetical protein YozE {Bacillus subtilis [TaxId: 1423]}
Probab=15.50 E-value=42 Score=23.99 Aligned_cols=51 Identities=18% Similarity=0.380 Sum_probs=34.5
Q ss_pred cCChHHHHHHHHHHHHHhCCC-CChhhHHHHHHHHHhcCCCcchhHHHHHHHHHHHHh
Q 039447 246 SFDPQRDFRESMVEMIVENNL-RGSQDLEDLLACYFSLNSNEYHEVIVKAFEQVWLDI 302 (307)
Q Consensus 246 S~DPy~DFR~SM~EMI~e~~i-~~~~dLeeLL~CYLsLNs~~~H~~Iv~AF~diw~~L 302 (307)
+.||-.||-+-+- ..... ...+|-+||. -||-+|+ .|-..+.+|-++|..-
T Consensus 16 ~~d~i~~lA~~a~---~D~~FPK~s~d~~eiS-~YLE~n~--~~l~sm~~FD~aW~~Y 67 (74)
T d2fj6a1 16 PKDSISEFANQAY---EDHSFPKTSTDYHEIS-SYLELNA--DYLHTMATFDEAWDQY 67 (74)
T ss_dssp CCSHHHHHHHHHH---TCTTSCTTCCCHHHHH-HHHHTSH--HHHTTHHHHHHHHHHH
T ss_pred CCChHHHHHHHHh---cCcCCCCCCCCHHHHH-HHHHHcc--cccchHHHHHHHHHHH
Confidence 5688888865432 22221 3455677765 8999997 4566799999999863
No 10
>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]}
Probab=14.07 E-value=76 Score=24.11 Aligned_cols=46 Identities=11% Similarity=0.117 Sum_probs=32.9
Q ss_pred CcccceEEEEeecCChHHHHHHHHHHHHHhCCCCChh--------hHHHHHHHHH
Q 039447 234 KSISESFVVVKSSFDPQRDFRESMVEMIVENNLRGSQ--------DLEDLLACYF 280 (307)
Q Consensus 234 ~~~~~svAVvk~S~DPy~DFR~SM~EMI~e~~i~~~~--------dLeeLL~CYL 280 (307)
.++.+|..|...|.. -.+.|+.++|+|.++.-.+.. +|++|..-|=
T Consensus 64 t~v~~GM~V~T~s~~-v~~~Rr~~le~ll~~H~~dC~~C~~~g~CeLq~~~~~yg 117 (126)
T d3c8ya2 64 TLIEDGMIINTNSDA-VNEKIKSRISQLLDIHEFKCGPCNRRENCEFLKLVIKYK 117 (126)
T ss_dssp CBCCTTCEEESSCHH-HHHHHHHHHHHHHTTSCCCCTTCTTTTSCHHHHHHHHHT
T ss_pred cCCCCCCEEEeCCHH-HHHHHHHHHHHHHhcCCCcCCCCCCCCCcHHHHHHHHHC
Confidence 356777777666544 669999999999987543322 7999887774
Done!