BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039448
(1276 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZKD5|RRP12_CHICK RRP12-like protein OS=Gallus gallus GN=RRP12 PE=2 SV=1
Length = 1294
Score = 360 bits (925), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 338/1292 (26%), Positives = 588/1292 (45%), Gaps = 179/1292 (13%)
Query: 3 AFEMEDGTAFS-IGNDVDLCSSILSRFSSSAQEEHQHLCAAIGAMSQELKDQNLPLTPIS 61
A E GT S + + ++ S + RF S H+ +CA + A++ ++ Q T
Sbjct: 89 ATERSSGTFLSGLSDCTNVTFSRVQRFWESNSAAHKEICAVLAAVTDVIRSQGGKETETE 148
Query: 62 YFGATCSSLDRLLSSPDPDRSSHIIGSLSTILSLLLPKISVAVLKKKGDFLTDLVVRVV- 120
YF A ++L+ + SP+ + +++ +L+L+L ++ VL KK + + ++
Sbjct: 149 YFAALMTTLE-AVDSPES------VAAVAYLLNLVLKRVPSPVLIKKFSDASKAFMNIIS 201
Query: 121 -RLSSVTAGAVASGLTSLSRLLTGRGRVNWSD--VSQLYGVVLAFMTDSRLKVRRQSHLC 177
+ S + A+ L+ L+ LL + WS Q+Y +L+F ++ KVR+ +
Sbjct: 202 SQACSGSTSALRWVLSCLATLLRKQDLAAWSYPVTLQVYHGLLSFCVHTKPKVRKAAQHG 261
Query: 178 VREILLSLQGTLVL----APASEAITNMFEKFLLL----AGGSNTSADEKPKGAQEVLYV 229
V +L +G+ + AP KF + AGG+ K A L+V
Sbjct: 262 VCSVL---RGSEFMFGDEAPEHHPAAPSSAKFCVQEIEKAGGT--------KEATTTLHV 310
Query: 230 LDALKECLPLMSTKYTAVILKYFKTLLELRQPLVTRRVTDALN-VICLHP-TLEVSAEAL 287
L L++ LP + ++ L LVT A + + P T + AE
Sbjct: 311 LALLRDLLPCFPAAVLKTCCETLLRVMTLSHVLVTACAMQAFHSLFSAQPRTSCLPAELN 370
Query: 288 LDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINREICSTKLPIVFNALKDILAS 347
++ +L V + +T+ + + + + +++C LP +F+A + S
Sbjct: 371 AQIITALYDYVPSANDLQPLLTWLT-TMERAHVNLGRLQKDLCWAHLPRLFSATMNCFLS 429
Query: 348 EHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGPTVIEKICATVESLLD 407
H + + AA + L+ L+N CI + D++ NV++ G + + K+ +VE L
Sbjct: 430 PHLQVVAAAAQTLETLLNECIAPHM-----DELGNVSASTPAPG-SYLCKMFRSVEEGLT 483
Query: 408 YHYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQNLPDEDFPYRKQLHECVGSA 467
Y + A WD Q++ F+ G MR L++L D++ P FPY ++ + VG+A
Sbjct: 484 YRFHAAWDGVLQVLEVFFEVCGKQCHPIMRKCLQSLCDLRLSPH--FPYTTEVDQAVGAA 541
Query: 468 VGSMGPETFLCLLPLKLEASD--LSEVNVWLFPILKQYIIGARLNFFMEKLLGMAKLIGQ 525
VG+MGPE L +PL+++ + L WL P+L+ Y+ GARL FF L +A +
Sbjct: 542 VGAMGPEVLLEAVPLQIDGKEETLDFPRSWLLPVLRDYVQGARLGFFTSYFLPLAATLKS 601
Query: 526 KSQKFELEGRVFSSRSADALVYSLWSLLPSFCNYPVDTAESFMDLAGVLCSALHEENDIR 585
++ +F G+ S+ D L + +W+LLP FC P D E+F LA L A+ E D+R
Sbjct: 602 RALEFAQAGKSLESKIYDTLQWQVWTLLPGFCTRPTDVVEAFKGLARTLGMAISERPDLR 661
Query: 586 GIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELL 645
+C +L+ LI T ++RA + A+ L
Sbjct: 662 PTVCQALRTLIHHG--------------CGTDAERAE--------------VGRFAKNFL 693
Query: 646 SILSRIFLESAKDEGGCLQ-----STIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKT 700
IL ++ + +D G Q T+ + +I D ++ ++ +L
Sbjct: 694 PILFNVYSQPEEDGGSSSQRRSVLDTVRAYLTITDPQLGCGFLQKASEKL---------- 743
Query: 701 KSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGL 760
+S ESS +F R + DL +++ P N + + L+ I+P+LQ +
Sbjct: 744 -------------TSPESS-EFARLSILDLVVAMSPYANEQALGSLYRTIQPSLQSKDHS 789
Query: 761 IQKKAYKVLSTIL----RKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAH 816
+QKKAY+VL + C F+ S LEEL ++++ L S AKR RL CL+ I+
Sbjct: 790 MQKKAYRVLEEVCAAPHAPCQAFVHSHLEELQAVLLDSLKSAASPAKRPRLKCLFHIMKQ 849
Query: 817 VSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLY 876
+S + +++ + E+IL KE + R A+ +LV++G AF +E +
Sbjct: 850 LSAEHEP-----FVTALVPEVILCTKEVSVGARKNAFMLLVEMGHAF-IRFGPTPQEAME 903
Query: 877 QFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDL--VSNVYKLLPSTFLLLQRKNREII 934
+F +V GL G S MIS V L RL +EF D ++ V +LL + LLL + R+++
Sbjct: 904 RFLLLVYAGLTG-SVTMISCTVLALTRLFFEFRDHMELNVVEQLLQNICLLLGSRTRDVV 962
Query: 935 KANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDA 994
KA LG +KV++ L H+ +M+E + DD + F+ K++ L ++K G +
Sbjct: 963 KAALGFIKVVLLLVDTTLLAKHVQTMLEAVGSLSDDMRRHFRMKLRNLFTKFIRKFGFEL 1022
Query: 995 VKAVMPEEHMKLLKNIRKIKERKERKLATKTEDTKSHFSKTTTSRLSRWNHTKIFSDFGD 1054
V+ ++P E K+L NIRK + R ++ A + ++ + GD
Sbjct: 1023 VQGLLPAEFHKVLVNIRKAEARSRKQRALRQAAAEAEEEEAPA------------QPKGD 1070
Query: 1055 EGSEGSDAEYMDVGTVSGQGSKASPQLKSKVSTLRLKKKRKADKILPEDLFDQLEDEPLD 1114
E ++ + + + + +R K+ R+ + L + EDEPL+
Sbjct: 1071 SMEE----------ILADSEEEEEEEEERRRGKVRKKQARQKGQAW---LKEGEEDEPLN 1117
Query: 1115 LLDRQKTRSALRSSEHLKQKTESDDEPEIDSEGRLIIH------EGRKPKKVKPSNPDLD 1168
LD ++ L + LK+ + ++ +GRLIIH + + K V+ D+
Sbjct: 1118 FLDPNVSQRVLATEPSLKKSRGVKHDFQVSEDGRLIIHDEEEEVDNDEAKGVEEEVADV- 1176
Query: 1169 GRSEAGSMMSRPSSRKTQKRR-------KTSESGWAYT-------------------GSE 1202
E G S+K+QKRR E+G Y+ G+E
Sbjct: 1177 -LQEVGL-----RSKKSQKRRFREEPDDDEPETG-TYSQYRAGGSGIHRPLDKKPAFGAE 1229
Query: 1203 YASKKASGDVKRKGKLEPYAYWPMDRKLMSRR 1234
Y SKK GDVK+KG+L+PYAY P++R +++R
Sbjct: 1230 YRSKKGKGDVKKKGQLDPYAYIPLNRAKLNKR 1261
>sp|Q5JTH9|RRP12_HUMAN RRP12-like protein OS=Homo sapiens GN=RRP12 PE=1 SV=2
Length = 1297
Score = 313 bits (802), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 326/1293 (25%), Positives = 568/1293 (43%), Gaps = 180/1293 (13%)
Query: 5 EMEDGTAFS-IGNDVDLCSSILSRFSSSAQEEHQHLCAAIGAMSQELKDQNLPLTPISYF 63
E GT S + + ++ S + RF S H+ +CA + A+++ ++ Q T YF
Sbjct: 89 EKSSGTFLSGLSDCTNVTFSKVQRFWESNSAAHKEICAVLAAVTEVIRSQGGKETETEYF 148
Query: 64 GATCSSLDRLLSSPDPDRSSHIIGSLSTILSLLLPKISVAVLKKKGDFLTDLVVRVV--R 121
A ++++ + SP+ + +++ +L+L+L ++ VL KK + + ++ +
Sbjct: 149 AALMTTME-AVESPES------LAAVAYLLNLVLKRVPSPVLIKKFSDTSKAFMDIMSAQ 201
Query: 122 LSSVTAGAVASGLTSLSRLLTGRGRVNWSD--VSQLYGVVLAFMTDSRLKVRRQSHLCVR 179
SS + + L+ L+ LL + W Q+Y +L+F + K+R+ + V
Sbjct: 202 ASSGSTSVLRWVLSCLATLLRKQDLEAWGYPVTLQVYHGLLSFTVHPKPKIRKAAQHGVC 261
Query: 180 EILLSLQGTLVLAPASEAITNMFEKFLLL----AGGSNTSADEKPKGAQEVLYVLDALKE 235
+L + APA KF + +GGS K A L++L LK+
Sbjct: 262 SVLKGSEFMFEKAPAHHPAAISTAKFCIQEIEKSGGS--------KEATTTLHMLTLLKD 313
Query: 236 CLPLMSTKYTAVILKYFKTLLELRQPLVTRRVTDALN-VICLHPTLE-VSAEALLDLLCS 293
LP + ++ L LVT A + + P L +SAE ++ +
Sbjct: 314 LLPCFPEGLVKSCSETLLRVMTLSHVLVTACAMQAFHSLFHARPGLSTLSAELNAQIITA 373
Query: 294 LALSVSTNETSADAMTFTARLLNVGMIKIYSINREICSTKLPIVFNALKDILASEHEEAI 353
L V + E + +++ I + + ++ LP F L S H + +
Sbjct: 374 LYDYVPS-ENDLQPLLAWLKVMEKAHINLVRLQWDLGLGHLPRFFGTAVTCLLSPHSQVL 432
Query: 354 FAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGPT-VIEKICATVESLLDYHYSA 412
AAT++LK ++ C+ + I +V S A SGP + K+ VE L Y + A
Sbjct: 433 TAATQSLKEILKECVAPHMA-----DIGSVTSSA--SGPAQSVAKMFRAVEEGLTYKFHA 485
Query: 413 VWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQNLPDEDFPYRKQLHECVGSAVGSMG 472
W Q++ F+ G + MR L++L D++ P FP+ L + VG+AV SMG
Sbjct: 486 AWSSVLQLLCVFFEACGRQAHPVMRKCLQSLCDLRLSPH--FPHTAALDQAVGAAVTSMG 543
Query: 473 PETFLCLLPLKLEASD--LSEVNVWLFPILKQYIIGARLNFFMEKLLGMAKLIGQKSQKF 530
PE L +PL+++ S+ L WL P+++ ++ RL FF L +A + K+
Sbjct: 544 PEVVLQAVPLEIDGSEETLDFPRSWLLPVIRDHVQETRLGFFTTYFLPLANTLKSKAMDL 603
Query: 531 ELEGRVFSSRSADALVYSLWSLLPSFCNYPVDTAESFMDLAGVLCSALHEENDIRGIICS 590
G S+ D L + +W+LLP FC P D A SF LA L A+ E D+R +C
Sbjct: 604 AQAGSTVESKIYDTLQWQMWTLLPGFCTRPTDVAISFKGLARTLGMAISERPDLRVTVCQ 663
Query: 591 SLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLSILSR 650
+L+ LI + + + ++S A+ L IL
Sbjct: 664 ALRTLITKGCQAEADRAEVSRF----------------------------AKNFLPILFN 695
Query: 651 IFLE--SAKDEGG---CLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRK 705
++ + +A D + TI + +I D ++V L ++ ++L
Sbjct: 696 LYGQPVAAGDTPAPRRAVLETIRTYLTITDTQLVNSLLEKASEKVL-------------- 741
Query: 706 SNSMQIDDSSNESSPDFMRARLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKA 765
+ +S DF R + DL ++L P + I L+ I+P L+ +QKKA
Sbjct: 742 ----------DPASSDFTRLSVLDLVVALAPCADEAAISKLYSTIRPYLESKAHGVQKKA 791
Query: 766 YKVLSTILRKCDG----FLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDD 821
Y+VL + G F+ S LE+L +++ L S AKR RL CL I+ +S +
Sbjct: 792 YRVLEEVCASPQGPGALFVQSHLEDLKKTLLDSLRSTSSPAKRPRLKCLLHIVRKLSAEH 851
Query: 822 SEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQ-FFN 880
E +++ + E+IL KE + R A+ +LV++G AF G +E Q +
Sbjct: 852 KE-----FITALIPEVILCTKEVSVGARKNAFALLVEMGHAF--LRFGSNQEEALQCYLV 904
Query: 881 MVAGGLAGESPHMISAAVKGLARLAYEFSDLV--SNVYKLLPSTFLLLQRKNREIIKANL 938
++ GL G + M+S ++ L L +EF L+ S V +LL + LLL + R+++K+ L
Sbjct: 905 LIYPGLVG-AVTMVSCSILALTHLLFEFKGLMGTSTVEQLLENVCLLLASRTRDVVKSAL 963
Query: 939 GLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDAVKAV 998
G +KV V L H+ ++E + K DD + F+ K++ L ++K G + VK +
Sbjct: 964 GFIKVAVTVMDVAHLAKHVQLVMEAIGKLSDDMRRHFRMKLRNLFTKFIRKFGFELVKRL 1023
Query: 999 MPEEHMKLLKNIRKIKERKERKLATKTEDTKSHFSKTTTSRLSRWNHTKIFSDFGDEGSE 1058
+PEE+ ++L NIRK + R +R A + + E ++
Sbjct: 1024 LPEEYHRVLVNIRKAEARAKRHRALSQAAVEEEEEEEEEE----------------EPAQ 1067
Query: 1059 GSDAEYMDVGTVSGQGSKASPQLKSKVSTLRLKKKRKADKILPEDLFDQLEDEPLDLLDR 1118
G ++ S + +S+ R ++++ L E D EPL+ LD
Sbjct: 1068 GKGDSIEEILADSEDEEDNEEEERSRGKEQRKLARQRSRAWLKEGGGD----EPLNFLDP 1123
Query: 1119 QKTRSALRSSEHLKQKTESDDEPEIDSEGRLII-----------HEGRKPKKVKPSNP-- 1165
+ + L + + + D ++ ++GRLII EG K + + ++P
Sbjct: 1124 KVAQRVLATQPGPGRGRKKDHGFKVSADGRLIIREEADGNKMEEEEGAKGEDEEMADPME 1183
Query: 1166 DLDGRSE------------------------AGSMMSRPSSRKTQKRRKTSESGWAYTGS 1201
D+ R++ GS + RP ++K A G+
Sbjct: 1184 DVIIRNKKHQKLKHQKEAEEEELEIPPQYQAGGSGIHRPVAKK------------AMPGA 1231
Query: 1202 EYASKKASGDVKRKGKLEPYAYWPMDRKLMSRR 1234
EY +KKA GDVK+KG+ +PYAY P++R ++RR
Sbjct: 1232 EYKAKKAKGDVKKKGRPDPYAYIPLNRSKLNRR 1264
>sp|Q6P5B0|RRP12_MOUSE RRP12-like protein OS=Mus musculus GN=Rrp12 PE=1 SV=1
Length = 1295
Score = 298 bits (763), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 273/1043 (26%), Positives = 482/1043 (46%), Gaps = 108/1043 (10%)
Query: 5 EMEDGTAFS-IGNDVDLCSSILSRFSSSAQEEHQHLCAAIGAMSQELKDQNLPLTPISYF 63
E GT S + + ++ S + RF S H+ +CA + A+++ ++ Q T YF
Sbjct: 89 EKSSGTFLSGLSDCTNVTFSKVQRFWESNSAAHKEICAVLAAVTEVIRSQGGKETETEYF 148
Query: 64 GATCSSLDRLLSSPDPDRSSHIIGSLSTILSLLLPKISVAVLKKKGDFLTDLVVRVV--R 121
A ++++ + SP+ + +++ +L+L+L ++ VL KK + + ++ +
Sbjct: 149 AALMTTME-AVESPES------LAAVAYLLNLVLKRVPSPVLMKKFSDTSKAFMDIMSAQ 201
Query: 122 LSSVTAGAVASGLTSLSRLLTGRGRVNWSD--VSQLYGVVLAFMTDSRLKVRRQSHLCVR 179
SS + A+ L+ L+ LL + W Q+Y +L+F ++ K+R+ + V
Sbjct: 202 ASSGSTSALRWVLSCLAILLRKQDLEAWGYPITLQVYHGLLSFTVHAKPKIRKAAQHGVC 261
Query: 180 EILLSLQGTLVL----APASEAITNMFEKFLLL----AGGSNTSADEKPKGAQEVLYVLD 231
+L +G+ + APA KF + +GGS K A L++L
Sbjct: 262 SVL---KGSDFMFGEKAPAHHPAAVSTAKFCIQEIEKSGGS--------KEATTTLHMLT 310
Query: 232 ALKECLPLMSTKYTAVILKYFKTLLELRQPLVTRRVTDAL-NVICLHPTLE-VSAEALLD 289
LK+ LP + ++ L LVT A N+ P+ +SAE
Sbjct: 311 LLKDMLPCFPEGLVKSCSETLLRVMTLNHVLVTACAMQAFHNLFHAKPSPSTLSAELNAQ 370
Query: 290 LLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINREICSTKLPIVFNALKDILASEH 349
++ +L V + E + +++ I + + R++ L F L S H
Sbjct: 371 IVTALYDYVPS-ENDLQPLLAWLKVMEKAHINLVRLQRDLGLGHLARFFGTAVTCLLSPH 429
Query: 350 EEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGPT-VIEKICATVESLLDY 408
+ AAT+ LK ++ C+ + I +V S A SGP I K+ VE L Y
Sbjct: 430 SQVAAAATQTLKEILKECVAPH-----IADIGSVTSSA--SGPPQYITKMFRAVEEGLTY 482
Query: 409 HYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQNLPDEDFPYRKQLHECVGSAV 468
+ A W Q++ F+ G + M+ L++L D++ P FP+ L + VG+AV
Sbjct: 483 KFHAAWSSVLQLLGVFFEACGKQAHPVMKKCLQSLCDLRLSPH--FPHTAALDQAVGAAV 540
Query: 469 GSMGPETFLCLLPLKLEASD--LSEVNVWLFPILKQYIIGARLNFFMEKLLGMAKLIGQK 526
SMGPE L +PL+++ S+ L WL P+++ ++ RL FF L +A + +K
Sbjct: 541 TSMGPEVVLQAVPLEIDGSEETLDFPRSWLLPVIRDHVRETRLGFFTTYFLPLATTLKRK 600
Query: 527 SQKFELEGRVFSSRSADALVYSLWSLLPSFCNYPVDTAESFMDLAGVLCSALHEENDIRG 586
+ G S+ D L + +W+LLP FC P D A SF LA L +A++E D+R
Sbjct: 601 AMDLAQAGSTVESKIYDTLQWQIWTLLPGFCTRPTDVAASFKGLARTLGTAINERPDLRV 660
Query: 587 IICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLS 646
+C +L+ LI K E + D + V ++ A + L +L + + ++
Sbjct: 661 TVCQALRTLIT---KGCEAEADRAEV--------------SRFAKNFLPILFNLYGQPVA 703
Query: 647 ILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKS 706
E+A L+ TI + +I + ++V ++ ++L
Sbjct: 704 A-----GEAAAPRRAVLE-TIKTYLTITEAQLVNSFLEKATEKVL--------------- 742
Query: 707 NSMQIDDSSNESSPDFMRARLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAY 766
+ +S DF R + DL ++L P + I L+ I+P L+ +QKKAY
Sbjct: 743 ---------DPASSDFTRLSVLDLVVALAPYSDEAAISKLYSTIRPYLESKVHGVQKKAY 793
Query: 767 KVLSTILRKCDG----FLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDS 822
+VL + G F+ S L++L +++ L + AKR RL CL I+ +S +
Sbjct: 794 RVLEEVCASSQGPAARFVQSHLDDLKKTLLDSLRTTSSPAKRPRLKCLIHIVKTLSAEHE 853
Query: 823 EQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKEN-LYQFFNM 881
E +++ + E+IL KE + R A+ +LV++G AF G +E+ L ++ +
Sbjct: 854 E-----FIAALIPEVILCTKEVSVGARKSAFTLLVEMGHAF--LRFGSNQEDALQRYLVL 906
Query: 882 VAGGLAGESPHMISAAVKGLARLAYEFSDLV--SNVYKLLPSTFLLLQRKNREIIKANLG 939
+ GL G + +S ++ L L +EF L+ S V +LL + LLL + R+++K+ LG
Sbjct: 907 IYPGLLG-AVTTVSCSILALTHLLFEFKGLMGTSTVEQLLENVCLLLASRTRDVVKSALG 965
Query: 940 LLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDAVKAVM 999
+KV V L H+ ++E + K DD + F+ K++ L +K G + VK ++
Sbjct: 966 FIKVAVVVMDVVHLAKHVQLVMEAIGKLSDDMRRHFRMKLRNLFIKFTRKFGFELVKGLL 1025
Query: 1000 PEEHMKLLKNIRKIKERKERKLA 1022
P E+ K+L NIRK + R ++ A
Sbjct: 1026 PAEYHKVLINIRKAETRAKKHRA 1048
>sp|Q12754|RRP12_YEAST Ribosomal RNA-processing protein 12 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RRP12 PE=1 SV=1
Length = 1228
Score = 256 bits (654), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 233/863 (26%), Positives = 393/863 (45%), Gaps = 110/863 (12%)
Query: 333 KLPIVFNALKDILASEHEEAIFAATEALKNLINACIDESLI--KQGVDQITNVNSDARKS 390
K+P VF+ + LASE E AA++ L ++++ + + L+ VD+ N D
Sbjct: 353 KIPGVFHIMCTYLASETPEVYQAASQCLISILSESVKDDLLLYTPSVDEKVFKNVDE--- 409
Query: 391 GPTVIEKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQNLP 450
+I +I T L YS +I+ F+K S+ +LK + D +
Sbjct: 410 ---IISQIAKTFIDFLSIRYSHCSREILKILVAAFNKFRYRSNPHFLKSLK-IVDTWRVN 465
Query: 451 DEDF-PYRKQLHECVGSAVGSMGPETFLCLLPLKLE-ASDLSEVNVWLFPILKQYIIGAR 508
+E F R ++ +G+++ +MGPE L PL L+ S WL P+++ Y A
Sbjct: 466 EEQFMDLRNEIELVIGASISAMGPEMILAEAPLNLDNPSSERPGRAWLLPLIRDYTKNAN 525
Query: 509 LNFFMEKLLGMAKLIGQKSQKFELEG---RVFSSRSADALVYSLWSLLPSFCNYPVDTAE 565
L F +L K K K E RVF + +V +WS LP FC P+D E
Sbjct: 526 LATFQNELAPYIKSFQSKFDKVPEESIQLRVFQT-----IVDQIWSTLPRFCELPMDLRE 580
Query: 566 SFMD-LAGVLCSALHEENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAH 624
SF D A L S L+ E ++R IC +L+ L + N E + NV++ +
Sbjct: 581 SFTDEFASELSSLLYSEVELRTTICHALKVLAESNVSYAEESSS-HNVLL-------LQR 632
Query: 625 YTTKVATDNLNVLKSSARELLSILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTRLFK 684
+ A N+ L + + LL++L ++ ++ + + TI + I KE + + F
Sbjct: 633 FPISEAQKNIEYLSTKSTNLLAVLFNVYTQTTPNARSYILETIDQYLKITSKEDLEKTFN 692
Query: 685 RTMHRLLEATQEAGKTKSTRKSNSMQIDDSSN---ESSPDFMRARLFDLALSLLPGLNAK 741
L NSM + S N E + A L DL + ++ L
Sbjct: 693 NVCGLL---------------KNSMNEESSGNVNKEKKKPQLTATLLDLIICMITYLPVS 737
Query: 742 EIDVLFVAIKPALQDDEGLIQKKAYKVLSTI--LRKCDGFLSSRLEELLGLMIEVLPSCH 799
LF + + LIQK+AY++++ + L+ ++ + ++ +M++ S
Sbjct: 738 SYSALFSMFSLTVNSADALIQKRAYRIITKLSELKSGSTAVAQFISDIENVMVDSASSVQ 797
Query: 800 FSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQI 859
SAK RL + I+ + D + +I+ + + E+IL+ K+ N+++R A+D L+ +
Sbjct: 798 TSAKAARLTAIKTIVELLPLDHLD----FIVRT-VAEVILSTKDVNEKSRETAFDTLICM 852
Query: 860 GRAFGDEENGGGK---------------ENLYQFFNMVAGGLAGESPHMISAAVKGLARL 904
GR +E NG K ++ +FF +++ GL GES HM+S+++ G A L
Sbjct: 853 GRKM-NEPNGIIKLFQIPGYDPTTPDQSSSISEFFKIISAGLIGESQHMVSSSITGYACL 911
Query: 905 AYEF-----SDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLAS 959
+EF S ++ ++Y + L L +REI+K+ +G KV V E ++ +
Sbjct: 912 VFEFKNELDSGILMDIYDTIE---LYLTSNSREIVKSAIGFTKVCVLGLPEELMRPKVPE 968
Query: 960 MVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDAVKAVMPEEHMKLLKNIRKIKERKER 1019
++ LL+W + FK+K+K ++E L+++ G D ++A PEE +LL NIRK++ R +R
Sbjct: 969 LLLKLLRWSHEHTGHFKAKVKHIIERLIRRFGYDYIEANFPEEDRRLLTNIRKMRNRNKR 1028
Query: 1020 KLATKTEDTKSHFSKTTTSRLSRWNHTKIFSDFGDEGSEGSDAEYMDVGTVSGQGSKASP 1079
K E+ + S ++ SR+ S F DE GSD E + GS
Sbjct: 1029 ----KDEEVTTGVSDVAATKGSRF-----MSAF-DEAVYGSDEE-------NDNGSDQEE 1071
Query: 1080 QLKSKVSTLRLKKKRKADKILPEDLFDQLEDEPLDLLDRQKTR--SALRSSEHLKQKTES 1137
+ K K A + + E D PLDLLD Q S+ R + K + +
Sbjct: 1072 NVAGG------KMKNGAKQFIVES-----GDNPLDLLDSQTLAHISSTRPKKFNKNQNRA 1120
Query: 1138 ---DDEPEIDSEGRLIIHEGRKP 1157
DD DSEG+L++ KP
Sbjct: 1121 RFNDDAFNFDSEGKLVVKGQPKP 1143
>sp|Q9C0X8|RRP12_SCHPO Putative ribosomal RNA-processing protein 12 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAPB8E5.07c PE=3 SV=1
Length = 1163
Score = 233 bits (593), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 183/656 (27%), Positives = 319/656 (48%), Gaps = 43/656 (6%)
Query: 386 DARKSGPTVIEKICATV-ESLLDYHYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLA 444
D + V+E+IC+ + ++L D + + FQI+S++ DKLG +S ++ AL+ +
Sbjct: 354 DTTPNSFAVVEEICSFICDALRDIRFRLAYPECFQIISSLCDKLGPHSDPYLIPALEVID 413
Query: 445 DMQNLPDEDFPYRKQLHECVGSAVGSMGPETFLCLLPLKLEASDLSEVN-VWLFPILKQY 503
++ E F + + E +GS V ++GPE L +LPL LE +D V WL P+L+
Sbjct: 414 YLRG--SEGFDGKALVDEAIGSFVRAIGPEAMLRVLPLNLELNDKDAVGRAWLLPVLRDN 471
Query: 504 IIGARLNFFMEKLLGMAKLIGQKSQKF-ELEGRVFSSRSADALVYSLWSLLPSFCNYPVD 562
I A L F + ++ + QK + +L+ S+ LV +WSLLP +C P+D
Sbjct: 472 IRFANLAHFTNYFVPLSGQLYQKVIEMNDLDS--IPSKLLQTLVDQIWSLLPGYCYLPLD 529
Query: 563 TAESF-MDLAGVLCSALHEENDIRGIICSSLQNLIQQNKKTLE--GKNDLSNVVISTASQ 619
SF ++ A +L + L+E+ +R +IC+SL L++ N K + +D+ +V +S +
Sbjct: 530 LQSSFTLEFASILVNVLYEQVSLRSVICNSLTALVETNSKVADKLPLDDVISVPVSASD- 588
Query: 620 RAMAHYTTKVATDNLNVLKSSARELLSILSRIFLESAKDEGGCLQSTIGDFASIADKEIV 679
A+ NL L + + LS+L +F + + I + I+ + +
Sbjct: 589 ----------ASSNLAFLTNMSSNFLSVLLNVFSSTPSQYRYPILKCIQTWIFISSNDTI 638
Query: 680 TRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLN 739
++K+ L ++ + S I + SSP M L DL + + P LN
Sbjct: 639 HSVYKKVTDLLPDSLNDLA--------GSFNIA-ADGISSP--MAYSLIDLLIVISPYLN 687
Query: 740 AKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDG--FLSSRLEELLGLMIEVLPS 797
LF + L+ IQKK YK+L T+LR G + + ++E+ + V
Sbjct: 688 QDYAVTLFEYVHEFLRHVNPAIQKKGYKLLGTLLRVDYGKAYATQHVKEIFEELSSVADR 747
Query: 798 CHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLV 857
S ++ RL L + S + + L E I++LKE N++ R+ A+ +L
Sbjct: 748 VVSSTRKDRLASLNALYELQSSE-----LVIAIPQLLPEAIISLKEVNEKARHTAFQLLF 802
Query: 858 QIGR-AFGDEENGGGK-ENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNV 915
I + A E G K E + +F ++++ GLAG S HMISA + ++ + E+ +S
Sbjct: 803 NIAKSAVNSVEFGNSKPERVEKFVSVISAGLAGSSTHMISATIIAISSIVMEYKVFISEP 862
Query: 916 Y--KLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKN 973
+ +L+ + L + REI KA + +K+ V+ E ++ L ++ LL W + K
Sbjct: 863 FLVQLISTLNLFITSSKREIAKAAIDFIKISVSSFPVECIKPLLPELIPNLLAWSHEGKA 922
Query: 974 QFKSKIKLLLEMLVKKCGLDAVKAVMPEEHMKLLKNIRKIKERKERKLATKTEDTK 1029
+ K++ L E + +K G+ ++ P E KL+ NIRK +ER RK A K + K
Sbjct: 923 NLRVKVRHLFEKMGRKYGIAEIEPFFPAEDKKLITNIRKTQERNIRKRAMKRDPAK 978
>sp|Q9VYA7|RRP12_DROME RRP12-like protein OS=Drosophila melanogaster GN=CG2691 PE=1 SV=2
Length = 1384
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 194/976 (19%), Positives = 377/976 (38%), Gaps = 123/976 (12%)
Query: 91 TILSLLLPKISVAVLKKKGDFLTDLVVRVVR--LSSVTAGAVASGLTSLSRLLTGRGRVN 148
T+L++ + + VLKK+ D + R+++ + S + + LS +L +
Sbjct: 191 TLLAMGINSVPAPVLKKRFAQTADTMQRLLQRFMESTNQSVIRHVIGCLSVILRAQDYAA 250
Query: 149 WSDVS--QLYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFL 206
WS S Q + +LAF S+ K+R+ + I L + G+ + PA ++ N ++ +
Sbjct: 251 WSYSSTFQYFDAILAFSIHSQPKIRKAAQ---HAIALIIHGSCFMLPAIKSDDNEMDEAV 307
Query: 207 LLAGGSNTSADE----------KPK---GAQE-VLYVLDALKECLPLMSTKYTAVILKYF 252
+ A KP+ AQ VL+ L+ LK+ L T+ + ++
Sbjct: 308 EQPKVKHHPASSRVAKFCLAQFKPEVLANAQTTVLHTLELLKDTLYGFKTEDIRSVCEHL 367
Query: 253 KTLLELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTA 312
+++ LV L + L + ++A LL ++ +++
Sbjct: 368 LSIMTAANVLVRTNCFQTLYSLFLKKSPNLNASLCAKLLAAIH-EYRPDKSDIRQTIAWV 426
Query: 313 RLLNVGMIKIYSINREICSTKLPIVFNALK-DILASEHEEAIFAATEALKNLINACIDES 371
+L G + + ++ ++C LP + + D+ S+ +E + + +K L+ C+ +
Sbjct: 427 TVLKEGHLHLATMQLDLCMQALPRLIDVCTTDLWLSDQKELVAGVSNCIKELLQDCVSRA 486
Query: 372 LIKQGVDQITNVNSDARKSGPTVIEKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTY 431
D N S + +I A++ +L+ + + I S +F+ G
Sbjct: 487 -CATAEDAQCNRQS---------VSRIIASLHKMLNAPFGEISRFVILIFSFVFEACGKL 536
Query: 432 SSYFMRGALKNLADMQNLPDEDFPYRKQLHECVGSAVGSMGPETFLCLLPLKLEASDLSE 491
+ L + D +R Q+ V SA+ ++GPE L +PL +
Sbjct: 537 FGSELTPPLMTICKRY---DTQSAHRLQIEHTVISAIKALGPELVLTAIPLADGKGVMQL 593
Query: 492 VNVWLFPILKQYIIGARLNFFMEKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWS 551
WL P+L++ GA L FF EK++ +A K ++F SS + L LW
Sbjct: 594 ERSWLLPLLREGANGASLQFFKEKIVALAMDCQLKWKEFAEAKNNSSSHIYELLCCQLWG 653
Query: 552 LLPSFCNYPVDTAESFMDLAGVLCSALHEENDIRGIICSSLQNLIQQNKKTLEGKNDLSN 611
L P FC P D E LA L +A+ + + R I L L+ N+
Sbjct: 654 LFPGFCRQPRD-PEYLRYLAPTLGAAVEKNPEFRPPIYDGLMELLGDNQ----------- 701
Query: 612 VVISTASQRAMAHYTTKVATDNLNVLKSSARELLSILSRIFLESAK-----DEGGCLQST 666
S +A+ Y A+ L L I+ + D+ +
Sbjct: 702 ---SAECHQAIGQY---------------AKNFLPRLFNIYTQKPNGTYEADQRKRVLEV 743
Query: 667 IGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRAR 726
I + S A ++ LF+ +L + + F
Sbjct: 744 IRLYISRAPADVQLELFENAQEQL------------------------AASALASFEYDA 779
Query: 727 LFDLALSLLPGLNAKEIDVLF-VAIKPALQDDEGLI-----------QKKAYKVLSTI-- 772
FD+ +++ K I F + P L++D+ + Q+K Y++L +
Sbjct: 780 FFDINAAIVRVQTCKGIKAYFDKYMAPILRNDKSKLVAKDEQKLKKQQRKTYELLRELMT 839
Query: 773 --LRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFII-AHVSKDDSEQRRSYI 829
L C F L ++++ + + RL CL +I H + ++Q +
Sbjct: 840 SELPSCQKFTRKNSIVLQQILLDSFNTSCNVCQASRLHCLKSLIDCHSNLAYNDQ----L 895
Query: 830 LSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGE 889
+ + E +L KE + A ++ I + + D GK N F +++ G AG+
Sbjct: 896 VMKAIPEAVLNYKEFSNYKEQVAEQLIKSITQLYHD----AGKIN--DFVDILTAGFAGD 949
Query: 890 SPHMISAAVKGLARLAYEFSDL-VSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKS 948
+ + + A L + L V+ + +L + L +K+R+ +A + L +
Sbjct: 950 EMLVTNTILAFRAVLQQQGEHLTVATLEFVLQQVSVFLVQKSRKQAEAAIAFLITFIKVM 1009
Query: 949 HAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDAVKAVMPEEHMKLLK 1008
+ HL +++ L DTK + +I LL+ L + + +P + + +
Sbjct: 1010 PIPLVANHLEAIMRSLSAMTKDTKRYCRIQIGYLLKKLCIRFSPGELAGFVPGDDDVIHR 1069
Query: 1009 NIRKIKERKERKLATK 1024
++ I++R R L K
Sbjct: 1070 RLKMIRKRTRRDLRKK 1085
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 32/45 (71%)
Query: 1190 KTSESGWAYTGSEYASKKASGDVKRKGKLEPYAYWPMDRKLMSRR 1234
K+ +S GSEY SKKA GD+K+ GKL+PYAY P+ R +++R
Sbjct: 1307 KSGKSTSRPAGSEYGSKKAKGDMKKSGKLDPYAYIPLTRNNLNKR 1351
>sp|Q9Y824|YON1_SCHPO Uncharacterized protein C1105.01 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPBC1105.01 PE=1 SV=2
Length = 1001
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 106/217 (48%), Gaps = 17/217 (7%)
Query: 828 YILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAF------------GDEENGGGKE-N 874
++L S + E++L K + R A+++LV++G G+E N E N
Sbjct: 730 HLLPSAIAEVVLFSKHHDDDLRAMAFELLVEVGNRMKNGGKINMSLIDGEEPNKTVVEAN 789
Query: 875 LYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVY--KLLPSTFLLLQRKNRE 932
+ ++ +M++ L +S ++ + + L R+ YEFSD + + Y +L LQ N+E
Sbjct: 790 INEYISMISANLMNDSLNLKVSTIFALTRIFYEFSDYIDDDYVNAVLEEVQSSLQSNNQE 849
Query: 933 IIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGL 992
I +A +G +K+ + + HL +++ +L+W + K K K LL+ +++ L
Sbjct: 850 IARAAVGFIKMYITSFTKSKVLFHLDTLLPLILRWIKEHNAYVKLKAKQLLDRMLRVFSL 909
Query: 993 DAVKAVMPEEHMK-LLKNIRKIKE-RKERKLATKTED 1027
++A E K L+ I +++ R ++K+ D
Sbjct: 910 KELEAFAENETDKEWLQRIWRVRRSRGDKKVVDNKRD 946
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,099,226
Number of Sequences: 539616
Number of extensions: 17272125
Number of successful extensions: 53642
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 53379
Number of HSP's gapped (non-prelim): 335
length of query: 1276
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1147
effective length of database: 121,958,995
effective search space: 139886967265
effective search space used: 139886967265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)