Query 039448
Match_columns 1276
No_of_seqs 205 out of 268
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 09:45:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1248 Uncharacterized conser 100.0 3E-203 8E-208 1839.5 94.8 1105 23-1255 26-1168(1176)
2 PF08161 NUC173: NUC173 domain 100.0 2.5E-56 5.5E-61 477.7 19.5 197 398-596 1-198 (198)
3 KOG1248 Uncharacterized conser 100.0 9.8E-23 2.1E-27 253.0 63.1 380 620-1007 571-959 (1176)
4 KOG2171 Karyopherin (importin) 99.2 1.2E-05 2.5E-10 102.9 57.9 807 18-963 117-1021(1075)
5 KOG2171 Karyopherin (importin) 98.3 0.035 7.7E-07 72.2 48.0 254 724-995 329-601 (1075)
6 PF12460 MMS19_C: RNAPII trans 97.4 0.31 6.7E-06 59.3 34.5 375 544-967 17-414 (415)
7 PF10508 Proteasom_PSMB: Prote 97.2 0.16 3.5E-06 63.3 29.2 371 548-988 61-462 (503)
8 PF01602 Adaptin_N: Adaptin N 97.1 1.1 2.3E-05 55.8 34.4 234 152-448 40-277 (526)
9 KOG1242 Protein containing ada 97.0 0.28 6.1E-06 60.7 26.8 203 751-968 140-346 (569)
10 KOG1824 TATA-binding protein-i 96.9 2.5 5.5E-05 54.7 54.0 797 17-969 125-1058(1233)
11 PF01602 Adaptin_N: Adaptin N 96.8 0.31 6.7E-06 60.5 26.6 292 568-950 113-410 (526)
12 PTZ00429 beta-adaptin; Provisi 96.7 1.8 4E-05 56.3 32.3 205 721-952 233-439 (746)
13 PF10508 Proteasom_PSMB: Prote 96.6 1.8 3.8E-05 54.2 30.9 257 82-363 51-317 (503)
14 PF12348 CLASP_N: CLASP N term 96.5 0.079 1.7E-06 58.6 16.6 181 756-950 18-210 (228)
15 PF05004 IFRD: Interferon-rela 96.3 0.26 5.6E-06 57.7 19.7 202 155-368 44-259 (309)
16 PF12717 Cnd1: non-SMC mitotic 96.2 0.068 1.5E-06 57.3 13.5 114 845-968 1-114 (178)
17 PF12460 MMS19_C: RNAPII trans 95.9 6.2 0.00013 48.2 30.0 256 722-990 112-396 (415)
18 PF14500 MMS19_N: Dos2-interac 95.6 0.54 1.2E-05 53.8 17.9 237 162-441 7-253 (262)
19 KOG0213 Splicing factor 3b, su 95.6 10 0.00022 48.3 32.9 177 827-1020 794-978 (1172)
20 KOG1991 Nuclear transport rece 95.6 12 0.00026 49.1 34.5 178 803-993 389-578 (1010)
21 KOG1242 Protein containing ada 95.4 7.9 0.00017 48.4 27.5 194 635-862 287-484 (569)
22 PF12348 CLASP_N: CLASP N term 95.3 0.48 1.1E-05 52.3 16.0 183 800-994 18-212 (228)
23 PF03378 CAS_CSE1: CAS/CSE pro 94.4 1.3 2.9E-05 54.2 17.8 243 636-908 19-274 (435)
24 PF05004 IFRD: Interferon-rela 94.2 7.2 0.00016 45.8 22.6 175 756-937 54-248 (309)
25 KOG1824 TATA-binding protein-i 93.8 30 0.00066 45.4 63.4 352 155-566 175-569 (1233)
26 KOG2274 Predicted importin 9 [ 93.8 3.5 7.5E-05 53.3 19.7 256 155-441 492-753 (1005)
27 KOG2023 Nuclear transport rece 93.5 29 0.00062 44.1 37.7 169 248-431 91-268 (885)
28 KOG1993 Nuclear transport rece 93.2 13 0.00028 47.8 22.9 150 155-315 527-687 (978)
29 PF12726 SEN1_N: SEN1 N termin 91.9 53 0.0011 43.2 29.4 89 82-172 180-287 (727)
30 KOG0212 Uncharacterized conser 91.8 22 0.00047 44.3 21.8 292 643-1008 167-469 (675)
31 KOG2023 Nuclear transport rece 90.8 58 0.0012 41.6 41.0 641 241-1008 168-880 (885)
32 KOG0212 Uncharacterized conser 90.7 36 0.00079 42.5 22.2 232 748-996 84-329 (675)
33 PF03378 CAS_CSE1: CAS/CSE pro 90.5 7.1 0.00015 48.0 16.8 160 853-1021 138-314 (435)
34 KOG1820 Microtubule-associated 89.9 12 0.00027 49.1 18.8 190 756-960 264-457 (815)
35 KOG1967 DNA repair/transcripti 89.6 2 4.3E-05 55.5 11.1 137 62-206 864-1004(1030)
36 PLN03200 cellulose synthase-in 89.2 1.4E+02 0.003 43.6 53.6 392 543-988 422-860 (2102)
37 COG5181 HSH155 U2 snRNP splice 89.0 33 0.00072 43.1 20.1 178 826-1020 598-783 (975)
38 PF10274 ParcG: Parkin co-regu 88.9 7.3 0.00016 42.3 13.3 123 873-995 34-171 (183)
39 PLN03076 ARF guanine nucleotid 88.6 64 0.0014 46.3 25.2 242 111-367 1182-1491(1780)
40 KOG1062 Vesicle coat complex A 88.3 95 0.002 40.5 27.2 173 556-798 206-397 (866)
41 PF14500 MMS19_N: Dos2-interac 88.3 54 0.0012 37.7 23.5 223 722-964 14-255 (262)
42 COG5215 KAP95 Karyopherin (imp 87.7 61 0.0013 40.6 21.1 218 737-966 86-328 (858)
43 PLN03200 cellulose synthase-in 87.0 1.9E+02 0.004 42.4 44.5 226 133-374 610-866 (2102)
44 KOG1820 Microtubule-associated 85.6 15 0.00033 48.3 15.9 188 798-999 262-454 (815)
45 KOG2956 CLIP-associating prote 85.3 6.4 0.00014 47.8 11.3 122 743-864 327-480 (516)
46 KOG0915 Uncharacterized conser 85.2 33 0.00072 47.2 18.6 151 779-969 1032-1182(1702)
47 PF11864 DUF3384: Domain of un 85.1 1.1E+02 0.0023 38.2 22.5 234 222-480 147-419 (464)
48 PF08506 Cse1: Cse1; InterPro 85.0 35 0.00076 41.2 17.7 117 846-967 225-358 (370)
49 PF12755 Vac14_Fab1_bd: Vacuol 84.6 6.7 0.00015 38.2 9.3 93 802-904 2-94 (97)
50 COG5181 HSH155 U2 snRNP splice 84.4 74 0.0016 40.2 19.6 265 134-464 584-865 (975)
51 KOG2956 CLIP-associating prote 84.1 81 0.0018 38.8 19.6 187 761-963 303-494 (516)
52 KOG1240 Protein kinase contain 83.6 1.4E+02 0.0031 40.7 22.8 223 723-949 439-728 (1431)
53 PF02985 HEAT: HEAT repeat; I 82.6 2.3 5E-05 32.3 4.2 30 338-367 2-31 (31)
54 PF12755 Vac14_Fab1_bd: Vacuol 82.4 13 0.00028 36.2 10.3 90 897-988 6-96 (97)
55 PF04118 Dopey_N: Dopey, N-ter 82.3 30 0.00065 40.7 15.1 166 660-859 72-252 (307)
56 PF08506 Cse1: Cse1; InterPro 81.8 1.3E+02 0.0028 36.4 26.2 85 843-931 266-360 (370)
57 PTZ00429 beta-adaptin; Provisi 80.9 2E+02 0.0044 38.1 44.8 241 646-944 301-544 (746)
58 PF10274 ParcG: Parkin co-regu 80.3 27 0.00059 38.0 12.7 124 333-479 39-174 (183)
59 KOG1525 Sister chromatid cohes 80.1 2.7E+02 0.0058 39.0 26.4 209 722-948 69-290 (1266)
60 KOG1060 Vesicle coat complex A 79.8 2.1E+02 0.0046 37.5 23.0 292 663-994 197-517 (968)
61 KOG1059 Vesicle coat complex A 79.5 2.1E+02 0.0045 37.3 26.6 193 155-364 145-364 (877)
62 PF05918 API5: Apoptosis inhib 79.3 1.9E+02 0.0042 36.8 21.5 49 548-599 78-127 (556)
63 PF05918 API5: Apoptosis inhib 78.6 1.9E+02 0.0041 36.9 21.1 226 154-448 59-297 (556)
64 PF12074 DUF3554: Domain of un 78.2 87 0.0019 37.1 17.7 136 125-266 174-316 (339)
65 cd00020 ARM Armadillo/beta-cat 77.6 9.3 0.0002 36.7 7.8 108 833-944 8-118 (120)
66 KOG2160 Armadillo/beta-catenin 77.4 61 0.0013 38.6 15.4 117 788-912 82-202 (342)
67 PF11864 DUF3384: Domain of un 75.5 2.2E+02 0.0047 35.5 21.4 237 726-997 10-254 (464)
68 PF13251 DUF4042: Domain of un 74.4 42 0.00092 36.5 12.3 144 132-279 5-177 (182)
69 COG5656 SXM1 Importin, protein 72.3 39 0.00085 43.4 12.7 167 826-1001 409-580 (970)
70 PF12719 Cnd3: Nuclear condens 70.5 89 0.0019 36.4 14.9 161 827-1008 21-195 (298)
71 KOG0211 Protein phosphatase 2A 70.3 3.4E+02 0.0074 36.0 21.0 323 637-995 153-515 (759)
72 PF13251 DUF4042: Domain of un 69.7 30 0.00065 37.7 9.9 140 804-947 4-175 (182)
73 PF08623 TIP120: TATA-binding 69.2 37 0.00081 36.5 10.3 102 843-951 38-152 (169)
74 PF08158 NUC130_3NT: NUC130/3N 68.9 3.6 7.9E-05 35.5 2.2 37 559-599 9-50 (52)
75 KOG2256 Predicted protein invo 68.8 3.5E+02 0.0075 34.9 22.9 81 931-1024 534-626 (661)
76 PF12830 Nipped-B_C: Sister ch 68.6 99 0.0021 33.6 13.7 61 722-786 23-86 (187)
77 PRK09687 putative lyase; Provi 67.7 2.4E+02 0.0052 32.7 19.4 161 156-363 25-186 (280)
78 PF12717 Cnd1: non-SMC mitotic 65.7 41 0.00088 36.1 10.0 104 891-1002 2-106 (178)
79 PF01347 Vitellogenin_N: Lipop 64.6 2E+02 0.0043 36.9 17.7 237 666-957 351-597 (618)
80 PF02985 HEAT: HEAT repeat; I 63.8 10 0.00022 28.7 3.6 28 156-183 2-29 (31)
81 KOG1243 Protein kinase [Genera 63.5 4.4E+02 0.0096 34.3 19.6 78 800-884 341-418 (690)
82 PF11277 Med24_N: Mediator com 63.4 5.4E+02 0.012 35.2 21.5 100 83-182 91-224 (990)
83 PF05536 Neurochondrin: Neuroc 63.0 73 0.0016 40.5 13.0 165 245-431 96-266 (543)
84 PLN03076 ARF guanine nucleotid 60.5 4.6E+02 0.01 38.3 20.8 62 308-373 1714-1777(1780)
85 PF13513 HEAT_EZ: HEAT-like re 59.6 16 0.00034 31.1 4.4 42 322-363 14-55 (55)
86 cd00020 ARM Armadillo/beta-cat 58.5 40 0.00087 32.3 7.7 107 749-860 11-119 (120)
87 PF13646 HEAT_2: HEAT repeats; 58.5 32 0.00069 31.6 6.7 78 835-935 2-80 (88)
88 PF12397 U3snoRNP10: U3 small 57.0 95 0.0021 31.0 10.3 74 828-908 2-76 (121)
89 cd08050 TAF6 TATA Binding Prot 55.2 56 0.0012 39.1 9.6 112 873-993 174-302 (343)
90 KOG2274 Predicted importin 9 [ 54.4 6.9E+02 0.015 33.6 43.9 170 665-861 510-689 (1005)
91 KOG2213 Apoptosis inhibitor 5/ 54.0 4.9E+02 0.011 31.8 18.8 142 736-888 56-202 (460)
92 PRK13800 putative oxidoreducta 53.6 3.8E+02 0.0082 36.4 18.0 164 721-940 698-861 (897)
93 KOG1967 DNA repair/transcripti 53.0 7.3E+02 0.016 33.5 47.5 57 917-974 909-965 (1030)
94 PF08167 RIX1: rRNA processing 50.7 2E+02 0.0044 30.6 12.0 117 872-990 20-145 (165)
95 KOG1992 Nuclear export recepto 48.9 8E+02 0.017 32.8 22.0 387 218-696 371-778 (960)
96 KOG0213 Splicing factor 3b, su 48.1 7.9E+02 0.017 32.5 45.2 323 111-472 398-748 (1172)
97 KOG2025 Chromosome condensatio 48.1 7.8E+02 0.017 32.4 19.6 205 666-903 25-256 (892)
98 PRK09687 putative lyase; Provi 48.0 5E+02 0.011 30.1 17.0 161 746-940 55-215 (280)
99 KOG4524 Uncharacterized conser 46.7 1.6E+02 0.0035 39.3 12.0 115 313-447 566-683 (1014)
100 KOG1517 Guanine nucleotide bin 46.4 70 0.0015 42.8 8.8 102 82-185 570-673 (1387)
101 COG5240 SEC21 Vesicle coat com 45.8 5E+02 0.011 33.1 15.3 148 736-905 294-441 (898)
102 PF01603 B56: Protein phosphat 44.9 4.2E+02 0.009 32.5 15.0 40 322-361 283-322 (409)
103 PF08161 NUC173: NUC173 domain 44.7 64 0.0014 35.6 7.3 80 921-1001 4-83 (198)
104 PF08389 Xpo1: Exportin 1-like 44.7 1.8E+02 0.0039 29.3 10.3 67 104-178 75-148 (148)
105 KOG1243 Protein kinase [Genera 44.4 30 0.00065 44.2 5.2 191 640-865 327-519 (690)
106 PF12719 Cnd3: Nuclear condens 44.4 5.7E+02 0.012 29.7 21.2 197 767-991 5-210 (298)
107 PF10521 DUF2454: Protein of u 44.3 3.4E+02 0.0074 31.4 13.6 155 808-967 98-273 (282)
108 PF11935 DUF3453: Domain of un 44.2 76 0.0017 35.9 8.0 103 97-203 100-210 (239)
109 KOG1060 Vesicle coat complex A 43.9 2.7E+02 0.006 36.6 13.1 125 225-366 303-459 (968)
110 KOG2122 Beta-catenin-binding p 43.6 4.6E+02 0.01 37.1 15.4 82 727-816 236-325 (2195)
111 PF08064 UME: UME (NUC010) dom 43.5 3.3E+02 0.0072 26.9 11.4 89 876-967 13-104 (107)
112 KOG1949 Uncharacterized conser 43.5 5.3E+02 0.011 33.7 15.2 97 826-923 167-268 (1005)
113 PF13001 Ecm29: Proteasome sta 43.4 6.1E+02 0.013 32.0 16.6 139 766-913 301-450 (501)
114 PF12074 DUF3554: Domain of un 43.0 3.4E+02 0.0073 32.2 13.6 85 177-276 6-90 (339)
115 KOG4535 HEAT and armadillo rep 42.5 65 0.0014 39.6 7.2 110 838-947 53-180 (728)
116 KOG1058 Vesicle coat complex C 42.5 9.6E+02 0.021 31.8 19.1 178 642-863 242-424 (948)
117 KOG2081 Nuclear transport regu 42.4 8.4E+02 0.018 31.1 35.1 143 805-964 408-554 (559)
118 PF12530 DUF3730: Protein of u 42.2 5.5E+02 0.012 28.9 23.1 211 222-470 14-233 (234)
119 PF04931 DNA_pol_phi: DNA poly 42.2 1E+03 0.022 31.9 39.1 48 959-1015 589-636 (784)
120 PF09744 Jnk-SapK_ap_N: JNK_SA 41.3 14 0.0003 39.3 1.4 23 979-1001 8-30 (158)
121 smart00802 UME Domain in UVSB 39.0 3.8E+02 0.0083 26.7 11.0 89 875-966 12-103 (107)
122 KOG0166 Karyopherin (importin) 38.9 6.7E+02 0.015 31.8 15.3 197 730-939 222-429 (514)
123 KOG1059 Vesicle coat complex A 38.8 1.1E+03 0.023 31.3 24.2 62 735-796 157-232 (877)
124 PF10264 Stork_head: Winged he 38.7 66 0.0014 30.4 5.2 45 514-562 7-51 (80)
125 smart00802 UME Domain in UVSB 38.4 1.8E+02 0.0038 29.1 8.5 73 745-819 11-87 (107)
126 KOG0166 Karyopherin (importin) 38.2 7.9E+02 0.017 31.2 15.8 57 127-183 209-266 (514)
127 PF08064 UME: UME (NUC010) dom 38.0 1.9E+02 0.0042 28.6 8.8 73 745-819 11-87 (107)
128 PF11640 TAN: Telomere-length 36.4 3.8E+02 0.0082 28.2 11.3 123 157-279 7-143 (155)
129 PF13513 HEAT_EZ: HEAT-like re 35.7 59 0.0013 27.5 4.2 48 891-938 1-49 (55)
130 KOG2229 Protein required for a 35.3 1E+03 0.022 30.1 21.8 230 752-999 107-359 (616)
131 PF10191 COG7: Golgi complex c 34.9 1.3E+03 0.027 31.0 21.9 19 549-567 601-629 (766)
132 PF08167 RIX1: rRNA processing 34.4 5.6E+02 0.012 27.2 12.3 118 241-365 19-143 (165)
133 PF04826 Arm_2: Armadillo-like 34.2 4.2E+02 0.009 30.5 11.9 185 738-944 9-203 (254)
134 COG5096 Vesicle coat complex, 33.9 1.3E+03 0.028 30.8 24.2 246 721-991 34-320 (757)
135 smart00638 LPD_N Lipoprotein N 33.5 1.1E+03 0.024 29.9 21.0 132 807-957 418-553 (574)
136 PF04118 Dopey_N: Dopey, N-ter 33.0 1.5E+02 0.0032 35.0 8.2 81 917-998 97-177 (307)
137 KOG0889 Histone acetyltransfer 31.2 2.1E+03 0.045 34.0 19.8 283 97-426 1061-1353(3550)
138 PF10521 DUF2454: Protein of u 30.5 6.9E+02 0.015 29.0 13.2 49 323-371 106-154 (282)
139 PF08767 CRM1_C: CRM1 C termin 30.3 9.8E+02 0.021 28.3 17.8 145 803-950 44-198 (319)
140 KOG1822 Uncharacterized conser 30.2 2E+03 0.044 32.0 32.1 435 33-484 814-1328(2067)
141 KOG1061 Vesicle coat complex A 30.1 1.4E+03 0.031 30.2 27.4 286 243-595 235-526 (734)
142 KOG4646 Uncharacterized conser 30.0 1.9E+02 0.0042 30.3 7.3 65 919-985 101-167 (173)
143 PF04388 Hamartin: Hamartin pr 29.6 9.2E+02 0.02 31.7 15.3 118 876-1005 69-200 (668)
144 KOG4535 HEAT and armadillo rep 29.4 1.2E+03 0.027 29.2 16.1 71 113-184 108-180 (728)
145 KOG2149 Uncharacterized conser 29.1 1.1E+03 0.023 29.0 14.4 127 834-966 60-189 (393)
146 KOG1078 Vesicle coat complex C 28.0 1.3E+03 0.029 30.6 15.6 194 746-944 283-530 (865)
147 KOG0392 SNF2 family DNA-depend 26.0 5.9E+02 0.013 35.5 12.4 87 330-439 814-900 (1549)
148 PF10487 Nup188: Nucleoporin s 25.7 1.9E+03 0.041 30.1 24.5 346 22-470 530-914 (931)
149 PF02944 BESS: BESS motif; In 24.7 1.5E+02 0.0032 23.7 4.4 33 953-985 4-36 (37)
150 PF04826 Arm_2: Armadillo-like 24.0 3.8E+02 0.0083 30.8 9.4 104 749-861 58-163 (254)
151 COG5098 Chromosome condensatio 23.8 1.8E+03 0.039 29.2 21.0 157 634-815 235-415 (1128)
152 KOG2259 Uncharacterized conser 23.6 1.8E+03 0.038 29.1 17.4 95 845-950 171-267 (823)
153 PF13001 Ecm29: Proteasome sta 23.4 3.6E+02 0.0078 34.0 9.8 167 18-189 254-449 (501)
154 PF08767 CRM1_C: CRM1 C termin 23.3 9.7E+02 0.021 28.4 12.9 97 318-430 99-198 (319)
155 PRK13800 putative oxidoreducta 22.5 2.1E+03 0.045 29.5 19.2 29 155-183 653-681 (897)
156 KOG1062 Vesicle coat complex A 22.5 2E+03 0.043 29.2 27.0 268 568-908 141-416 (866)
157 KOG2140 Uncharacterized conser 22.4 5.2E+02 0.011 32.7 10.2 70 919-992 277-349 (739)
158 KOG1020 Sister chromatid cohes 21.9 2.6E+03 0.056 30.4 20.1 214 742-996 813-1039(1692)
159 PTZ00479 RAP Superfamily; Prov 21.5 3.6E+02 0.0077 33.2 8.6 72 873-947 116-188 (435)
160 KOG3687 Tuberin - Rap/ran-GTPa 21.5 7.5E+02 0.016 33.6 11.7 136 723-865 342-506 (1697)
161 KOG1993 Nuclear transport rece 21.4 2.1E+03 0.045 29.1 30.2 61 413-473 588-648 (978)
162 PF12612 TFCD_C: Tubulin foldi 20.3 1.1E+03 0.024 25.5 12.2 31 154-184 7-37 (193)
163 KOG3723 PH domain protein Melt 20.1 7.7E+02 0.017 31.4 11.0 109 888-1001 122-240 (851)
164 KOG0301 Phospholipase A2-activ 20.0 1.9E+03 0.042 28.7 14.7 137 722-865 559-705 (745)
No 1
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.5e-203 Score=1839.47 Aligned_cols=1105 Identities=29% Similarity=0.457 Sum_probs=960.0
Q ss_pred HHhhccCCCChHHhHHHHHHHHHHHHHHhhCCCCCChHhHHHHHHhhhhhhhCCCCCCCCchhHHHHHHHhhhhccCcCh
Q 039448 23 SILSRFSSSAQEEHQHLCAAIGAMSQELKDQNLPLTPISYFGATCSSLDRLLSSPDPDRSSHIIGSLSTILSLLLPKISV 102 (1276)
Q Consensus 23 ~i~~r~~~S~~~~~k~~~avLaAv~e~i~~q~~~~t~t~YFaAlms~L~~~~~~~~~~~~~~~~~a~lyLL~lv~p~vP~ 102 (1276)
.++.++|.|++..||+++++|+||+|+|+ .|+||+++|+.++.++ .+|||.+++.+||+
T Consensus 26 ~~v~~~~es~sa~qke~~~~la~v~evir-------~veyf~~lmt~~e~~s--------------~~~LL~li~~~VPs 84 (1176)
T KOG1248|consen 26 DKVLRFWESSSAVQKEDGAVLAAVTEVIR-------DVEYFLALMTPIEGAS--------------SAYLLVLILKYVPS 84 (1176)
T ss_pred HHHHHHhhcchHHHHHhHHHHHHHHHHHH-------HhHHHHHhhhhhhhhh--------------HHHHHHHHHhhCCH
Confidence 34679999999999999999999999999 8999999999998743 19999999999999
Q ss_pred HHHhhhhhhHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhccCCCCCcchhh--HHHHHHhhccCCchhHHHHHHHHHHH
Q 039448 103 AVLKKKGDFLTDLVVRVVRLSSVTAGAVASGLTSLSRLLTGRGRVNWSDVSQ--LYGVVLAFMTDSRLKVRRQSHLCVRE 180 (1276)
Q Consensus 103 ~vLr~kf~~~~~~l~~~l~~~~~~~~~lRs~i~CL~~LL~aqd~~~W~~~~~--~~~~LL~f~~d~RPKVRK~Aq~av~~ 180 (1276)
+||++||++++++++|+++..+++.+++|++|+||+.||++||+++|+++++ .|+++|.|++|.+|||||+||++|+.
T Consensus 85 ~vL~~kFs~~~~~l~~~~~~~stn~svlr~~iscL~~lLraQd~~aW~~~~t~~~~~~il~~~~h~~pkvRk~a~~~i~~ 164 (1176)
T KOG1248|consen 85 PVLQAKFSDTLNILAPFLTAESTNGSVLRLAISCLEDLLRAQDASAWSYSSTKTELFGILAFAAHKKPKVRKAAQRGIAA 164 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHcchhhhccccHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 9999999999999999999989999999999999999999999999998765 99999999999999999999999999
Q ss_pred HHhccCCCC-CccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhccCCCchhHHHHHHHHHHhhccC
Q 039448 181 ILLSLQGTL-VLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECLPLMSTKYTAVILKYFKTLLELR 259 (1276)
Q Consensus 181 IL~~~~~~p-~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~~~~~~~~~~i~~~ll~Ll~l~ 259 (1276)
||++|+..| +.|||+..||+||.+.++... +++++++++|.|.||++++++||...++++|+.|+..|+.+
T Consensus 165 VL~~p~~~~~~~HpA~~~vak~cl~~~e~~~--------~~a~~t~v~~~L~Ll~~~~~~~p~~li~sl~e~lL~i~~~s 236 (1176)
T KOG1248|consen 165 VLKGPPFAPDAEHPASLSVAKFCLALIESKL--------GSAENTTVLRSLMLLRDVLSTFPRPLIKSLCEVLLNITTES 236 (1176)
T ss_pred HHcCCCCCccccchHHHHHHHHHHHHHHhhh--------chHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhhcccc
Confidence 999988776 889999999999999996322 34589999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCHhHHhhhhhHHHH
Q 039448 260 QPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINREICSTKLPIVFN 339 (1276)
Q Consensus 260 n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~~~c~~~LP~~f~ 339 (1276)
+++++.+||||||+||..++..++++.++.+|.+|+.|.|+.+|+..+++|+ +||..||.+|+.+|++.|++++|++|+
T Consensus 237 ~v~v~~~~~q~l~~lf~~~~~~l~a~~~a~lL~al~~l~ps~~D~~~t~~W~-~v~~~~~~~la~~q~~~~~~~~~~~~~ 315 (1176)
T KOG1248|consen 237 PVLVLLEVLQCLHSLFKKHPTALAAELNARLLTALMTLSPSENDDLLTVAWL-KVLNEAHDILATLQEEKALQALPRLFS 315 (1176)
T ss_pred hHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhCCCccchHHHHHHH-HHHHHHHHHHHHhCHHHHHHhhhhhhh
Confidence 9999999999999999999999999999999999999999999999988888 699999999999999999999999999
Q ss_pred HHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCCCChHHHHHHHHH-HHhhhhcchhhhHHHHH
Q 039448 340 ALKDILASEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGPTVIEKICAT-VESLLDYHYSAVWDMAF 418 (1276)
Q Consensus 340 ~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~~~~~~i~~i~~~-~~~~L~~~y~~aw~~vL 418 (1276)
+++.+|+|+.++++.+|+||+++++.+||. +++.+|+. ++++|+|||+++|++||
T Consensus 316 ~~~t~~~s~~~e~~q~a~q~l~~il~~sv~------------------------~~~~~c~~~~~~~l~~kf~~~~~~il 371 (1176)
T KOG1248|consen 316 LFFTILESLIEELVQAASQSLKEILKESVT------------------------VIDALCSKQLHSLLDYKFHAVWRFIL 371 (1176)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhcccCc------------------------ccHHHHHHHHHHHHcchHHHHHHHHH
Confidence 999999999999999999999999999996 13456665 89999999999999999
Q ss_pred HHHHHHHHhhcccchhhHHHHHHHHHhhhcCCCCCCcchhHHHHHHHHHHHhcChhhHhhcccCccccCcccccccchhh
Q 039448 419 QIVSTMFDKLGTYSSYFMRGALKNLADMQNLPDEDFPYRKQLHECVGSAVGSMGPETFLCLLPLKLEASDLSEVNVWLFP 498 (1276)
Q Consensus 419 ~vl~~lf~~lg~~~~~~l~~~L~~l~~lr~~~~~~f~~~~~ld~~iGaAi~amGPe~vL~~lPLnl~~~~~~~~RaWLLP 498 (1276)
++++++|++||++++|+|.++|+.|++||. +++|+++.++|+|||+||+|||||.||+++|||+.+++.+++|+||||
T Consensus 372 qi~s~~fek~G~~s~~~l~~~L~~l~~lr~--~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpLnl~~~s~~~~RsWLLP 449 (1176)
T KOG1248|consen 372 QILSALFEKCGELSGPELTKTLEGLCDLRA--SPDFFHKLQLDQCIGSAVRAMGPERVLTILPLNLHAESLSFTRSWLLP 449 (1176)
T ss_pred HHHHHHHHHhhhhcCHHHHHHHHHHHHhhc--CCCCccHHHHHHHHHHHHHhhCHHHHHHHcchhccccccccchhHhHH
Confidence 999999999999999999999999999999 558999999999999999999999999999999988999999999999
Q ss_pred hhhhccCCCChHhHHHHHHHHHHHHHHHhHHhhhhccchhhhhHHHHHHHHHhhhhCCCCCCcchhhhHHHHHHHHHHHh
Q 039448 499 ILKQYIIGARLNFFMEKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLPSFCNYPVDTAESFMDLAGVLCSAL 578 (1276)
Q Consensus 499 lLr~~i~~t~L~fF~~~~lPLa~~~~~k~~~~~~~~~~~~ak~~~tL~~QlWsLLPgFC~~P~D~~~sF~~lA~~L~~~L 578 (1276)
|||+|++|++|+||++||+|||+.|+.|+.++.+++.... +|+||++|||+||||||+||+|+.++|+++|++||.+|
T Consensus 450 vLR~~i~~A~La~F~~~ivpla~sl~~K~~~l~~~~~~~~--~~~tl~~QLW~LLP~FC~~P~Dl~~sF~~la~~l~~al 527 (1176)
T KOG1248|consen 450 VLRDYIIGASLAFFTEYIVPLAMSLQLKAKKLKEAGSQVS--LYDTLVDQLWSLLPGFCNYPVDLAESFTDLAPILGAAL 527 (1176)
T ss_pred HHHHhhccCcHHHHHHHHHHHHHHHHHHHHhhhhccCcHH--HHHHHHHHHHHhChhhhCCCccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877665 99999999999999999999999999999999999999
Q ss_pred ccCcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHHHHHHHhhcCCCcc
Q 039448 579 HEENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLSILSRIFLESAKD 658 (1276)
Q Consensus 579 ~~~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~vLfNvy~~~~~~ 658 (1276)
..+|+||++||+||+.||++|. ++.+|.+|+++++++|+||||+|||+|++++++
T Consensus 528 ~~~~elr~~Ic~sL~~Lv~~n~-------------------------~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~ 582 (1176)
T KOG1248|consen 528 LKRPELRETICNSLRMLVEQNK-------------------------PSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAA 582 (1176)
T ss_pred hcchHhHHHHHHHHHHHHHcCC-------------------------CcchHHHHHHHHhhhhhHHHHHHHHHhcCCCcc
Confidence 9999999999999999999984 223578899999999999999999999999988
Q ss_pred ccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHhHHHHHHHHHcCCC
Q 039448 659 EGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGL 738 (1276)
Q Consensus 659 ~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv~~l 738 (1276)
.+ ++++++..|+.|+-...+..++..++..|.++..+.... . +....++++.++||++++++||+
T Consensus 583 ~~-~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~----~----------~~s~~~~~~~slLdl~~~~a~~~ 647 (1176)
T KOG1248|consen 583 GR-KILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASD----L----------DESVASFKTLSLLDLLIALAPVQ 647 (1176)
T ss_pred cc-ccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhcc----c----------hhhhhhHHHHHHHHHHHhhhccc
Confidence 87 888777777776666666666666666666665432111 0 01145689999999999999999
Q ss_pred ChhhHHHHHHHHhhhhcC-CchhhhhHHHHHHHHHHhc--CcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHH
Q 039448 739 NAKEIDVLFVAIKPALQD-DEGLIQKKAYKVLSTILRK--CDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIA 815 (1276)
Q Consensus 739 ~~~~~~~Lf~~~~~~l~~-~d~~~QKKAYk~L~~i~~~--~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~ 815 (1276)
+++.+..+| .+.++..+ .++.+||||||+|.++++. +..|+.+++++|++.|.++..+++.++++.||.||++|+.
T Consensus 648 ~e~~vs~l~-~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~ 726 (1176)
T KOG1248|consen 648 TESQVSKLF-TVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLK 726 (1176)
T ss_pred cchhHHHHH-HhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 999999999 55566554 5899999999999999996 6779999999999999999999999999999999999997
Q ss_pred hccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH--HHhccCCCCCCcccHHHHHHHHhhhccCCChhH
Q 039448 816 HVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIG--RAFGDEENGGGKENLYQFFNMVAGGLAGESPHM 893 (1276)
Q Consensus 816 ~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg--~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphM 893 (1276)
.++. ++.+||++.|||+||++||+|+++|..||+||+.|| +.+.+.+++-+++.|++|+.+|++||+|.++||
T Consensus 727 ~~~~-----e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~ 801 (1176)
T KOG1248|consen 727 LLSA-----EHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRV 801 (1176)
T ss_pred hccH-----HHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHH
Confidence 7652 468999999999999999999999999999999999 888776555458999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhHH--HHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhh
Q 039448 894 ISAAVKGLARLAYEFSDLVSN--VYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDT 971 (1276)
Q Consensus 894 iSatI~ALsrLl~ef~d~i~~--~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~ 971 (1276)
++++|+|+++++|||++.+++ +.+++++|+++|++++|||+++|+||+||+|.++|.+.|.+|+++|++.++.|+|||
T Consensus 802 ~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~ 881 (1176)
T KOG1248|consen 802 VASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH 881 (1176)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh
Confidence 999999999999999999885 789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHhcCCHHHHHHHHHHHHHHHHHHhhhccCcccccccCcccc----ccccccccccc
Q 039448 972 KNQFKSKIKLLLEMLVKKCGLDAVKAVMPEEHMKLLKNIRKIKERKERKLATKTEDTKSHFSKTT----TSRLSRWNHTK 1047 (1276)
Q Consensus 972 k~hfR~KVr~IlerLIRKfG~e~V~~~~Pee~~KlL~nIrK~~~R~kRkk~~~~~e~~~~~~~~~----~~~~~~~~~~~ 1047 (1276)
++|||.|||+||||||||||++.|++++||+|||+|.||||+++|++||++...+..+..+++.+ +..+....++|
T Consensus 882 k~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK~r~R~~rK~a~~~d~~~~~~s~d~s~~~s~~~~a~~i~d 961 (1176)
T KOG1248|consen 882 KIKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRKRRRRKKRKKAMIVDIEDRSDSTDGSQKASAQKKAKTIED 961 (1176)
T ss_pred hHHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccchhHH
Confidence 99999999999999999999999999999999999999999999999998875322211111112 22233345566
Q ss_pred cccccCCCCCCCCcccccccCcccCCCCCCCccchhhhhHHHHHhhhhhhccCccccccccCCCccccCChHhhHhhhcc
Q 039448 1048 IFSDFGDEGSEGSDAEYMDVGTVSGQGSKASPQLKSKVSTLRLKKKRKADKILPEDLFDQLEDEPLDLLDRQKTRSALRS 1127 (1276)
Q Consensus 1048 i~~d~~d~d~e~~d~e~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~k~~~~~~~~~i~e~~deplDLLD~~~~~~~l~s 1127 (1276)
+++|+ |+| +|+|+.++ +++ ++...|.++ ...+..+..|+++++|||++++|+...++....
T Consensus 962 ~laDs-~s~-~D~e~n~~-----~~~-~~~~~~~k~-----------~s~r~~p~dllD~s~~~~~~~l~~~~~~~~~k~ 1022 (1176)
T KOG1248|consen 962 VLADS-DSD-EDMEANDA-----GER-RKKASTLKS-----------TSSRDQPRDLLDESDDEPLNTLTPKSAQRALKK 1022 (1176)
T ss_pred HHhcc-ccc-chhhhhhh-----hhc-cccchhccC-----------ccccCCcHHHHhhcccchhhhhchhhccchhhh
Confidence 66665 333 11111111 111 111111111 122334557999988999999999988888887
Q ss_pred ccccccCCCCCCCCcccCCCcEEeccCCCCCCCCCCCCCCCCcccc-----ccccCCCcc-hhh----------hhhccc
Q 039448 1128 SEHLKQKTESDDEPEIDSEGRLIIHEGRKPKKVKPSNPDLDGRSEA-----GSMMSRPSS-RKT----------QKRRKT 1191 (1276)
Q Consensus 1128 ~~~~k~~~~~d~~fk~~~dGRLII~e~~~~~~~~~~d~~~d~~~~~-----~~~~~~~~~-~~~----------~k~~k~ 1191 (1276)
++.+.|+.+.|++|+|+.||||||+|+....++++.++++|....- +.+..+.++ +++ .++++.
T Consensus 1023 q~~~~R~q~~d~~fk~s~dGrLii~~~~~~~~~~~~~~~sd~~~a~~~e~~~~~~k~~~k~~~~~e~~~~~~~~~~~~~a 1102 (1176)
T KOG1248|consen 1023 QKRTYRKQKPDSGFKFSRDGRLIIRDEERNNDKEKLREDSDANMADGEEDKKPPVKRFRKKKKFSESEYEYLEFPDSYKA 1102 (1176)
T ss_pred hhhhhhccCCccccccCCCCCeeeccccccccccccccccccccccchhhcccchhhhhhhhccccchhhhccCCccccc
Confidence 7777778888999999999999999776322223333333332221 111111111 111 114556
Q ss_pred CCCCc-------cccCccccccccCCcccccCccCcceeecCChhhhcccHhhHHHHHhhHHHHHHHhhhh
Q 039448 1192 SESGW-------AYTGSEYASKKASGDVKRKGKLEPYAYWPMDRKLMSRRPEHRAAARKGMASVVKLTKKL 1255 (1276)
Q Consensus 1192 ~~~g~-------~~~G~eyksKKA~GDvkkkgk~dPYAYiPL~r~~lnkR~~~k~~a~~g~~~vvk~~k~~ 1255 (1276)
+|+|+ ..+|++|++||++||+||+||.+||||+||+|..||+ +.|...|+.++|+++|.
T Consensus 1103 ~G~~~~r~~~~~~~~g~~~~~kk~k~d~~k~~k~~~~~~~p~~~~~l~~-----~~~~~~fk~~~r~~~~~ 1168 (1176)
T KOG1248|consen 1103 GGKGIHRDKLEKVWPGSEYGAKKQKGDRKKKGKKDPYAVIPLKRMELNS-----ALATTKFKKFLRAARKK 1168 (1176)
T ss_pred CCcchhHHHHhhccccchhhhhhcccchhhcCCCCceeeeehhhchhhH-----HHHHHHHHHHHHHhhcc
Confidence 77776 3579999999999999999999999999999999977 56778899999998753
No 2
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=100.00 E-value=2.5e-56 Score=477.69 Aligned_cols=197 Identities=44% Similarity=0.825 Sum_probs=191.3
Q ss_pred HHHHHHhhhhcchhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhhcCCCCCCcchhHHHHHHHHHHHhcChhhHh
Q 039448 398 ICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQNLPDEDFPYRKQLHECVGSAVGSMGPETFL 477 (1276)
Q Consensus 398 i~~~~~~~L~~~y~~aw~~vL~vl~~lf~~lg~~~~~~l~~~L~~l~~lr~~~~~~f~~~~~ld~~iGaAi~amGPe~vL 477 (1276)
||++++++|+|||+++|++||+|+++||+++|++++|+|.++|++||+||. +++|++++++|+|+|+||++||||.||
T Consensus 1 i~~~~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~--~~~f~~~~~~e~~lgaAi~amGpe~vL 78 (198)
T PF08161_consen 1 ICATLESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRE--SEDFSFRKELEQVLGAAIRAMGPEQVL 78 (198)
T ss_pred CHHHHHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHc--CCCcchHHHHHHHHHHHHHHCCHHHHH
Confidence 578899999999999999999999999999999999999999999999999 557999999999999999999999999
Q ss_pred hcccCccc-cCcccccccchhhhhhhccCCCChHhHHHHHHHHHHHHHHHhHHhhhhccchhhhhHHHHHHHHHhhhhCC
Q 039448 478 CLLPLKLE-ASDLSEVNVWLFPILKQYIIGARLNFFMEKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLPSF 556 (1276)
Q Consensus 478 ~~lPLnl~-~~~~~~~RaWLLPlLr~~i~~t~L~fF~~~~lPLa~~~~~k~~~~~~~~~~~~ak~~~tL~~QlWsLLPgF 556 (1276)
+++|||++ +++..++|+|||||||+|++|++|+||++||+|||++|++++.++.++++++++|+|+++++|||++||||
T Consensus 79 ~~lPLnl~~~~~~~~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~F 158 (198)
T PF08161_consen 79 SILPLNLDNADDSQPGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGF 158 (198)
T ss_pred HHCCCCccCCCcCCcccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHh
Confidence 99999998 56678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhHHHHHHHHHHHhccCcccHHHHHHHHHHHH
Q 039448 557 CNYPVDTAESFMDLAGVLCSALHEENDIRGIICSSLQNLI 596 (1276)
Q Consensus 557 C~~P~D~~~sF~~lA~~L~~~L~~~~~LR~~Ic~aLr~Li 596 (1276)
|++|+|+.++|++||++|+++||++|+||++||+|||+||
T Consensus 159 C~~P~D~~~~F~~~a~~L~~~L~~~~~LR~~Ic~aL~~Lv 198 (198)
T PF08161_consen 159 CNYPTDLAESFPSFAKLLGNALYDQPDLRPIICQALRRLV 198 (198)
T ss_pred cCCcccHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999986
No 3
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=9.8e-23 Score=253.02 Aligned_cols=380 Identities=23% Similarity=0.241 Sum_probs=279.0
Q ss_pred hhhhcCChHHHHHhHHHHHHhhHhHHHHHHHhhcCCCccccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcc
Q 039448 620 RAMAHYTTKVATDNLNVLKSSARELLSILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGK 699 (1276)
Q Consensus 620 ~~~~~~s~~~A~~nl~~L~~~A~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~ 699 (1276)
+....|++..+..+ ..++..+.-++-++...|+.++++..+.+++.|+..++..+..........++-.+.....-.+.
T Consensus 571 ~lfn~ytq~~~~~~-~~l~~~~~~L~~i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e 649 (1176)
T KOG1248|consen 571 RLFNVYTQTVAAGR-KILASRSTVLEIIRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTE 649 (1176)
T ss_pred HHHHHhcCCCcccc-ccHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccc
Confidence 34445666666666 77777777777777788888888888889999999998887555444444444333322211111
Q ss_pred cccccCCCcccccCCCCCCCch---hhHhHHHHHHHHH--cCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHh
Q 039448 700 TKSTRKSNSMQIDDSSNESSPD---FMRARLFDLALSL--LPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILR 774 (1276)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~llDL~~al--v~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~ 774 (1276)
.+.+.- ..++...+....+ .+...+|+.++.. ...+..+.++.+|+.+.+.+++.....|+.+|+.|..|.+
T Consensus 650 ~~vs~l---~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~ 726 (1176)
T KOG1248|consen 650 SQVSKL---FTVDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLK 726 (1176)
T ss_pred hhHHHH---HHhhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 111110 0011111111122 2344455555554 2237788999999999999999999999999999999999
Q ss_pred cCc-chhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHH-hhhHHHHHHHHHHHhhhhhHHHHHHH
Q 039448 775 KCD-GFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRR-SYILSSFLTEIILALKEANKRTRNRA 852 (1276)
Q Consensus 775 ~~~-~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~-~~~i~~~lpEiIL~~Ke~N~ktR~~A 852 (1276)
.+. ++..-....|-++++.. ..+...+|+.++.||+.+..+-.-.+...+. ...|..+|++|..+ .+|+.+|..|
T Consensus 727 ~~~~e~~~~i~k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isag--l~gd~~~~~a 803 (1176)
T KOG1248|consen 727 LLSAEHCDLIPKLIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAG--LVGDSTRVVA 803 (1176)
T ss_pred hccHHHHHHHHHHHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhh--hcccHHHHHH
Confidence 777 33333333455556666 6689999999999999886311111111011 34677777777776 6799999999
Q ss_pred HHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhH--HHHHhhhHHHHHhccCC
Q 039448 853 YDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVS--NVYKLLPSTFLLLQRKN 930 (1276)
Q Consensus 853 ~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~--~~~~ll~~v~llL~s~~ 930 (1276)
++ |+.+++.+.+..+..+.+.++.++.||...|+|.+|+|++|||-.+..++|.|.+.+- ..++||++++.++...+
T Consensus 804 s~-Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k 882 (1176)
T KOG1248|consen 804 SD-IVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHK 882 (1176)
T ss_pred HH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhh
Confidence 99 9999998888777778899999999999999999999999999999999999988665 47789999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCHHHHHhcCCHHHHHHH
Q 039448 931 REIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDAVKAVMPEEHMKLL 1007 (1276)
Q Consensus 931 REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~e~V~~~~Pee~~KlL 1007 (1276)
+++.+.+.+|++++|.++-.+.|+.++|+..-.++.|.-..|++++.|.-.+.+...+..+.+.....-+-++.+.+
T Consensus 883 ~~~r~Kvr~LlekLirkfg~~eLe~~~pee~~klL~nIRK~r~R~~rK~a~~~d~~~~~~s~d~s~~~s~~~~a~~i 959 (1176)
T KOG1248|consen 883 IKVRKKVRLLLEKLIRKFGAEELESFLPEEDMKLLTNIRKRRRRKKRKKAMIVDIEDRSDSTDGSQKASAQKKAKTI 959 (1176)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHhhCHHHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccccccchh
Confidence 99999999999999999999999999999988999998888888887777766777777777766555555554443
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.18 E-value=1.2e-05 Score=102.91 Aligned_cols=807 Identities=16% Similarity=0.166 Sum_probs=469.3
Q ss_pred hhhhhHHhhccCCCChHHhHHH-HHHHHHHHHHHhhCCCCCChHhHHHHHHhhhhhhhCCCCCCCCchhHHHHHHHhhhh
Q 039448 18 VDLCSSILSRFSSSAQEEHQHL-CAAIGAMSQELKDQNLPLTPISYFGATCSSLDRLLSSPDPDRSSHIIGSLSTILSLL 96 (1276)
Q Consensus 18 ~d~~~~i~~r~~~S~~~~~k~~-~avLaAv~e~i~~q~~~~t~t~YFaAlms~L~~~~~~~~~~~~~~~~~a~lyLL~lv 96 (1276)
||+-+-+.+- .+|..+..+++ .-||.-+.+++.++ . .-|+..+...+.+...+++. + +-.+.+-=+.-+
T Consensus 117 Pell~~L~q~-~~S~~~~~rE~al~il~s~~~~~~~~---~--~~~~~~l~~lf~q~~~d~s~---~-vr~~a~rA~~a~ 186 (1075)
T KOG2171|consen 117 PELLQFLFQS-TKSPNPSLRESALLILSSLPETFGNT---L--QPHLDDLLRLFSQTMTDPSS---P-VRVAAVRALGAF 186 (1075)
T ss_pred HHHHHHHHHH-hcCCCcchhHHHHHHHHhhhhhhccc---c--chhHHHHHHHHHHhccCCcc---h-HHHHHHHHHHHH
Confidence 5566666655 78888999988 67888888888665 3 34999999999988765532 2 555555555566
Q ss_pred ccCcC-hHHHhhhhhhHHHHHHHHhhhc--CCCchhHHHHHHHHHHHHhccCCCCCcchhhHHHHHHhhcc------CCc
Q 039448 97 LPKIS-VAVLKKKGDFLTDLVVRVVRLS--SVTAGAVASGLTSLSRLLTGRGRVNWSDVSQLYGVVLAFMT------DSR 167 (1276)
Q Consensus 97 ~p~vP-~~vLr~kf~~~~~~l~~~l~~~--~~~~~~lRs~i~CL~~LL~aqd~~~W~~~~~~~~~LL~f~~------d~R 167 (1276)
++..+ .+..+.+|..++-.++.++..- ..+.-...+++.||-.|+..-. ...++.+..++.|++ +--
T Consensus 187 ~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~p----k~l~~~l~~ii~~~l~Ia~n~~l~ 262 (1075)
T KOG2171|consen 187 AEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEP----KLLRPHLSQIIQFSLEIAKNKELE 262 (1075)
T ss_pred HHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhch----HHHHHHHHHHHHHHHHHhhccccc
Confidence 66665 7888999999998888888765 4566678889999988875422 124567888888876 345
Q ss_pred hhHHHHHHHHHHHHHhccCCC-----CCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhccCCCc
Q 039448 168 LKVRRQSHLCVREILLSLQGT-----LVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECLPLMST 242 (1276)
Q Consensus 168 PKVRK~Aq~av~~IL~~~~~~-----p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~~~~~ 242 (1276)
+=+|..|-+.++...+.-|.. +..|+--..+.........-.--+|....+...+.+.-.+..+.|-.+...+|+
T Consensus 263 ~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g 342 (1075)
T KOG2171|consen 263 NSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG 342 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh
Confidence 669999999999988762221 233333322222211100000001111111111355666677777777777775
Q ss_pred h-hHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHH
Q 039448 243 K-YTAVILKYFKTLLELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIK 321 (1276)
Q Consensus 243 ~-~~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~ 321 (1276)
+ ...-+.+.+-.+++..+..-..+++=+|..+-++....+-. .+.+|+....++..|.|.... |. |..+
T Consensus 343 ~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~-~l~~Il~~Vl~~l~DphprVr---~A------A~na 412 (1075)
T KOG2171|consen 343 KQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIG-NLPKILPIVLNGLNDPHPRVR---YA------ALNA 412 (1075)
T ss_pred hhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHH-HHHHHHHHHHhhcCCCCHHHH---HH------HHHH
Confidence 5 45668899999999999999999999999999888655544 566777777667666554332 22 3344
Q ss_pred HHhcC----Hh---HHhhhhhHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCCCChH
Q 039448 322 IYSIN----RE---ICSTKLPIVFNALKDILAS-EHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGPT 393 (1276)
Q Consensus 322 l~~~~----~~---~c~~~LP~~f~~~~~~l~S-~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~~~~~ 393 (1276)
+.+++ |. .|-+.+| ..+...+.| ++..|...|+.+|.++..+|-.+.+.- |-+.
T Consensus 413 igQ~stdl~p~iqk~~~e~l~---~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~p---------------YLd~ 474 (1075)
T KOG2171|consen 413 IGQMSTDLQPEIQKKHHERLP---PALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEP---------------YLDG 474 (1075)
T ss_pred HHhhhhhhcHHHHHHHHHhcc---HHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHH---------------HHHH
Confidence 44433 32 2223333 234455554 566788999999999999987655432 2233
Q ss_pred HHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh-hhcCCC-CCCcchhHHHHHHHHHHHhc
Q 039448 394 VIEKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLAD-MQNLPD-EDFPYRKQLHECVGSAVGSM 471 (1276)
Q Consensus 394 ~i~~i~~~~~~~L~~~y~~aw~~vL~vl~~lf~~lg~~~~~~l~~~L~~l~~-lr~~~~-~~f~~~~~ld~~iGaAi~am 471 (1276)
.+++ -+..++..++.-.-..|..-|++.=+..+..+.|++..++-.|-. |.+..+ +.-..|..--+|+|..=+|.
T Consensus 475 lm~~---~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AV 551 (1075)
T KOG2171|consen 475 LMEK---KLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAV 551 (1075)
T ss_pred HHHH---HHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHh
Confidence 3333 344556777777888899999988888888877765544433322 222111 23455666678999999999
Q ss_pred ChhhHhhc------ccCccc---cCcccccccchhhhhhhc--cCCCChHhHHHHHHHHHHHHHHHhHHhhhhccchhhh
Q 039448 472 GPETFLCL------LPLKLE---ASDLSEVNVWLFPILKQY--IIGARLNFFMEKLLGMAKLIGQKSQKFELEGRVFSSR 540 (1276)
Q Consensus 472 GPe~vL~~------lPLnl~---~~~~~~~RaWLLPlLr~~--i~~t~L~fF~~~~lPLa~~~~~k~~~~~~~~~~~~ak 540 (1276)
|-|.|+.. +++++. -++-++.|+++++-+-.- +-|.+..=|...++|....--+ ...
T Consensus 552 Gke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~p~L~~Vmppl~~ta~----~~p-------- 619 (1075)
T KOG2171|consen 552 GKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFAPFLPVVMPPLLKTAR----LDP-------- 619 (1075)
T ss_pred hhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhHhHHHHHhHHHHHhhc----cCC--------
Confidence 98888752 244442 233356789999888663 4588888888888876552211 111
Q ss_pred hHHHHHHHHHhhhhCCCCCCcchhhh--HHHHHHHHHHHhcc--CcccH-------HHHHHHHHHHHHHhhhhhcCCCCC
Q 039448 541 SADALVYSLWSLLPSFCNYPVDTAES--FMDLAGVLCSALHE--ENDIR-------GIICSSLQNLIQQNKKTLEGKNDL 609 (1276)
Q Consensus 541 ~~~tL~~QlWsLLPgFC~~P~D~~~s--F~~lA~~L~~~L~~--~~~LR-------~~Ic~aLr~Li~~n~~~~~~~~~~ 609 (1276)
+.|.. -+.|..+. +.+. .. .-+.+ +..+| .+-|.+|-.. .....++
T Consensus 620 -------~~~~~------d~~d~e~~~~~~~~-e~--~~~~~~e~~~I~Tsvl~eK~~A~~~Lv~~---a~~lk~~---- 676 (1075)
T KOG2171|consen 620 -------DVALS------DEEDEEEEQDLDGW-EV--VELGDKENIGIRTSVLDEKETACEALGEY---AKELKEA---- 676 (1075)
T ss_pred -------cccCc------Cchhhhhccccccc-hh--hccCCceeeeeeehhHHHHHHHHHHHHHH---HHhhhhh----
Confidence 11111 12221111 0000 00 00000 11122 2223322211 1100000
Q ss_pred chhhhhhHHHhhhhcCChHHHH---Hh-----HHHHHHhhHhHHHHHHHhhcCCCccccccHHHHHHHhhccCCHHHHHH
Q 039448 610 SNVVISTASQRAMAHYTTKVAT---DN-----LNVLKSSARELLSILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTR 681 (1276)
Q Consensus 610 ~~~~~~~~~~~~~~~~s~~~A~---~n-----l~~L~~~A~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~~l~~ 681 (1276)
...|..+..+ -+ ..-+++.|-+.+|.|.+-+-.. .=..+..+..
T Consensus 677 ------------F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A----------------~~~~p~~l~~ 728 (1075)
T KOG2171|consen 677 ------------FAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKA----------------CQGGPEYLKQ 728 (1075)
T ss_pred ------------hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH----------------hccChHHHHH
Confidence 0000000000 00 1112233333333333322110 0123447778
Q ss_pred HHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHhHHHHHHHHHc--------CCCChhhHHHHHHHHhhh
Q 039448 682 LFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLL--------PGLNAKEIDVLFVAIKPA 753 (1276)
Q Consensus 682 ~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv--------~~l~~~~~~~Lf~~~~~~ 753 (1276)
.|..++..+..+..+| .....+++++-++. ..+.++.++.+-..+...
T Consensus 729 l~~~~~~~l~~~l~~E------------------------~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~ 784 (1075)
T KOG2171|consen 729 LWEAIRPALIKALEEE------------------------PETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQ 784 (1075)
T ss_pred HHHHHHHHHHHHhhcC------------------------CcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHH
Confidence 8888888777766332 12233344443333 224555555444433222
Q ss_pred h---------------------------cCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHH
Q 039448 754 L---------------------------QDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHR 806 (1276)
Q Consensus 754 l---------------------------~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~R 806 (1276)
+ ...|..++-++-.++..+....++-....++++.-.+++-+.+-.+.+|..+
T Consensus 785 ~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~ll~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~a 864 (1075)
T KOG2171|consen 785 LLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYLLDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWA 864 (1075)
T ss_pred HHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence 1 0123446677777777777766665556666777777765555445559999
Q ss_pred HHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhc
Q 039448 807 LDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGL 886 (1276)
Q Consensus 807 L~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGL 886 (1276)
+.|+..++.+.-+.. -.+-..++|=++.++-|..-+.|.+|---+-.+++.-.+...+--.+.+.-.+.++---+
T Consensus 865 v~~~~d~ie~~~~a~-----~~~~~~~~p~~~~~~~d~~pEVRqaAsYGiGvlaq~~g~~y~~v~~~~l~~L~~~iq~~~ 939 (1075)
T KOG2171|consen 865 VCIFDDLIEGCGEAS-----AKYKERFLPLVLEALQDSDPEVRQAAAYGMGVLAQFGGEDYAPVCSEALPLLVQVLQPPL 939 (1075)
T ss_pred HHHHHHHHHhccccc-----chHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHcChh
Confidence 999999987754432 467778888888999999999998775555455552211100001122222222222222
Q ss_pred cCCChhH---HHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhc-cCCHHHHHHHHHHHHHHHhhcChhHHHH---HHHH
Q 039448 887 AGESPHM---ISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQ-RKNREIIKANLGLLKVLVAKSHAEGLQI---HLAS 959 (1276)
Q Consensus 887 aG~tphM---iSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~-s~~REIvKsaLgFvKV~v~~lp~~~l~~---~L~~ 959 (1276)
+- +-.- .-.++.|++|++|.....++ +.+.++..+..|- ..++|..+-...|+--++..=+..++.+ ++|.
T Consensus 940 ar-~Ee~~~ateNa~gaiaki~~~~~~~i~-vdqvl~~~l~~LPl~~D~eEa~~iy~~l~~L~e~n~p~v~~~~n~~ip~ 1017 (1075)
T KOG2171|consen 940 AR-TEENRRATENAIGAIAKILLFNPNRIP-VDQVLPAWLSWLPLKEDKEEAVPIYTFLSDLYESNHPIVLGPNNQNIPK 1017 (1075)
T ss_pred hh-hHHHhHHHHHHHHHHHHHHHhCCccCc-HHHHHHHHHHhCCCccchhhhhhHHHHHHHHHHhCCCeeeCCCcccchH
Confidence 22 1122 23467799999999988888 7788888776554 5779999999999888887776655542 3555
Q ss_pred HHHH
Q 039448 960 MVEG 963 (1276)
Q Consensus 960 lv~~ 963 (1276)
++.-
T Consensus 1018 i~~v 1021 (1075)
T KOG2171|consen 1018 ILSV 1021 (1075)
T ss_pred HHHH
Confidence 5543
No 5
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=0.035 Score=72.19 Aligned_cols=254 Identities=21% Similarity=0.243 Sum_probs=162.1
Q ss_pred HhHHHHHHHHHcCCCCh-hhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccc
Q 039448 724 RARLFDLALSLLPGLNA-KEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSA 802 (1276)
Q Consensus 724 ~~~llDL~~alv~~l~~-~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~a 802 (1276)
....+|.+.. +++. .-+..+|..+..++++++...-+-|...|..+.+.|...+..++++|...++..+. .|.
T Consensus 329 A~~~lDrlA~---~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~---Dph 402 (1075)
T KOG2171|consen 329 AEQALDRLAL---HLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLN---DPH 402 (1075)
T ss_pred HHHHHHHHHh---cCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcC---CCC
Confidence 3445555432 3332 23455666677777888888888899999999999999999999999999988866 667
Q ss_pred hHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 039448 803 KRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEA--NKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFN 880 (1276)
Q Consensus 803 k~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~--N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~ 880 (1276)
-+-|.+|+..+ .++..+... +...+-...||..++...|. |.+.-.-|-.-|+.....+ ..+-|..|+.
T Consensus 403 prVr~AA~nai-gQ~stdl~p-~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~-------~~~~l~pYLd 473 (1075)
T KOG2171|consen 403 PRVRYAALNAI-GQMSTDLQP-EIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC-------DKSILEPYLD 473 (1075)
T ss_pred HHHHHHHHHHH-HhhhhhhcH-HHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC-------cHHHHHHHHH
Confidence 78888887765 444444332 22334445555555555543 4455555555555544432 2466888888
Q ss_pred HHhh-----hccCCChhHHHHHHHHHHHHHHHhhh-hhHHHHHhhhHHHHHhccC----CHHHHHH---HHHHHHHHHhh
Q 039448 881 MVAG-----GLAGESPHMISAAVKGLARLAYEFSD-LVSNVYKLLPSTFLLLQRK----NREIIKA---NLGLLKVLVAK 947 (1276)
Q Consensus 881 mV~a-----GLaG~tphMiSatI~ALsrLl~ef~d-~i~~~~~ll~~v~llL~s~----~REIvKs---aLgFvKV~v~~ 947 (1276)
+++. -+...+|......|+||+.+.+-=.+ .++--..+++.+.-+|+.. .|+..-- +++.+...|-
T Consensus 474 ~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVG- 552 (1075)
T KOG2171|consen 474 GLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVG- 552 (1075)
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhh-
Confidence 8776 23345699999999999999865432 2222223334433344443 3555332 4566665554
Q ss_pred cChhHHHHHHHHHHHHHhhc---chhhHHHHHHHHHHHHHHHHHhcCHHHH
Q 039448 948 SHAEGLQIHLASMVEGLLKW---QDDTKNQFKSKIKLLLEMLVKKCGLDAV 995 (1276)
Q Consensus 948 lp~~~l~~~L~~lv~~Ll~w---s~d~k~hfR~KVr~IlerLIRKfG~e~V 995 (1276)
.+...++-.++|.-++.- .-+....-|...--..-||+|=+|-+..
T Consensus 553 --ke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~warmc~ilg~~F~ 601 (1075)
T KOG2171|consen 553 --KEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAFWARMCRILGDDFA 601 (1075)
T ss_pred --hhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHHHHHHHHHhchhhH
Confidence 355666666666666655 3455667777888889999999997754
No 6
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=97.44 E-value=0.31 Score=59.33 Aligned_cols=375 Identities=17% Similarity=0.220 Sum_probs=200.8
Q ss_pred HHHHHHHhhhhCCCCCCcchhhhHHHHHHHHHHHhcc--CcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhh
Q 039448 544 ALVYSLWSLLPSFCNYPVDTAESFMDLAGVLCSALHE--ENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRA 621 (1276)
Q Consensus 544 tL~~QlWsLLPgFC~~P~D~~~sF~~lA~~L~~~L~~--~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~ 621 (1276)
.-+..++..|..+|..+.=+..--..+-..|...+.. ..+.-..+|+.|..+++++.... .
T Consensus 17 ~~~~~~L~~l~~ls~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~--~--------------- 79 (415)
T PF12460_consen 17 SNYERILEALAALSTSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK--Q--------------- 79 (415)
T ss_pred hHHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc--c---------------
Confidence 3445566666666655433332223444444444432 56777888888998888763211 0
Q ss_pred hhcCChHHHHHhHHHHHHh-hHhHHHHHHHhhcCCCccccc---cHH----HHHHHhhccCCHHHHHHHHHHHHHHHHHH
Q 039448 622 MAHYTTKVATDNLNVLKSS-ARELLSILSRIFLESAKDEGG---CLQ----STIGDFASIADKEIVTRLFKRTMHRLLEA 693 (1276)
Q Consensus 622 ~~~~s~~~A~~nl~~L~~~-A~n~L~vLfNvy~~~~~~~~~---~~~----~tI~ay~sI~~~~~l~~~f~~~~~kL~~~ 693 (1276)
......| ..+++|.||+...+......+ .++ ..++.-..-.+++.-+++.+++..-+...
T Consensus 80 ------------~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~ 147 (415)
T PF12460_consen 80 ------------FEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSP 147 (415)
T ss_pred ------------cchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccc
Confidence 0123333 346999999999876544332 222 44555556667777777776666655511
Q ss_pred HHHhcccccccCCCcccccCCCCCCCchhhHhHHHHHHHHHcCCCChhhHHHHHHHHhhhh-cCCchhhhhHHHHHHHHH
Q 039448 694 TQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLNAKEIDVLFVAIKPAL-QDDEGLIQKKAYKVLSTI 772 (1276)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv~~l~~~~~~~Lf~~~~~~l-~~~d~~~QKKAYk~L~~i 772 (1276)
. ...+-+..+ ..........-.-+.-+++++=|-..-.....+.+-+..+. ...+.....-+-++|..+
T Consensus 148 ~---~~~~~~~~~-------~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~L 217 (415)
T PF12460_consen 148 K---SFSPFQPSS-------STISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASL 217 (415)
T ss_pred c---ccCCCCccc-------cccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 1 000100000 00000111122234445555544444334444555444443 344444444555666666
Q ss_pred HhcCcchhhhhHHHHHHHHHhhC-CCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHH
Q 039448 773 LRKCDGFLSSRLEELLGLMIEVL-PSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNR 851 (1276)
Q Consensus 773 ~~~~~~f~~~~~~el~~~L~~~~-~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~ 851 (1276)
+-... -.+.++++.+.+.... .....+.+..-+..+.|+.+.+.-..+. ...+++..++. .+...+ ....=..
T Consensus 218 vNK~~--~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~-~~~~~~~~L~~--lL~~~~-~g~~aA~ 291 (415)
T PF12460_consen 218 VNKWP--DDDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP-LATELLDKLLE--LLSSPE-LGQQAAK 291 (415)
T ss_pred HcCCC--ChhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHH--HhCChh-hHHHHHH
Confidence 65310 1113444444444443 3344445555556566666544222211 12344444433 222211 1222334
Q ss_pred HHHHHHHHHHHhccCCCCCCccc-----HHHHHHHHh----hhccCCChhHHHHHHHHHHHHHHHhhh--hhHHHHHhhh
Q 039448 852 AYDVLVQIGRAFGDEENGGGKEN-----LYQFFNMVA----GGLAGESPHMISAAVKGLARLAYEFSD--LVSNVYKLLP 920 (1276)
Q Consensus 852 A~~lLv~mg~~~~~~~~~~~~~~-----l~ef~~mV~----aGLaG~tphMiSatI~ALsrLl~ef~d--~i~~~~~ll~ 920 (1276)
+|++|+.=..-+.... ..+. =++||+.++ .|+-+.+....++-.+||+.|+-.-.. +++.+.+++|
T Consensus 292 ~f~il~~d~~~~l~~~---~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlP 368 (415)
T PF12460_consen 292 AFGILLSDSDDVLNKE---NHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLP 368 (415)
T ss_pred HHhhHhcCcHHhcCcc---ccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 4555544322222211 1122 245665544 455555555788889999999876532 3345778888
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhc
Q 039448 921 STFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKW 967 (1276)
Q Consensus 921 ~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~w 967 (1276)
-++--|..++.+|..++|.-+++.+..- .+.+.+|++.+|+.|++-
T Consensus 369 LLlqsL~~~~~~v~~s~L~tL~~~l~~~-~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 369 LLLQSLSLPDADVLLSSLETLKMILEEA-PELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHHHHHHhc
Confidence 8888889999999999999999999888 688899999999999864
No 7
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.23 E-value=0.16 Score=63.34 Aligned_cols=371 Identities=19% Similarity=0.249 Sum_probs=205.9
Q ss_pred HHHhhhhCCCCCCcchhhhHHHHHHHHHHHhcc-CcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCC
Q 039448 548 SLWSLLPSFCNYPVDTAESFMDLAGVLCSALHE-ENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYT 626 (1276)
Q Consensus 548 QlWsLLPgFC~~P~D~~~sF~~lA~~L~~~L~~-~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s 626 (1276)
=|=.+|..+ .|.++ ..++...|-..|++ +|.+|.-+|+.|+++++.+......-
T Consensus 61 iL~~~l~~~--~~~~l---~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~-------------------- 115 (503)
T PF10508_consen 61 ILKRLLSAL--SPDSL---LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLL-------------------- 115 (503)
T ss_pred HHHHHHhcc--CHHHH---HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHh--------------------
Confidence 344445544 34444 55666666677765 78999999999999886653211100
Q ss_pred hHHHHHhHHHHHHhhHhHHHHHHHhhcCCCccccccHHHHHHHhhccCCH-HHHHHHHHHH-HHHHHHHHHHhccccccc
Q 039448 627 TKVATDNLNVLKSSARELLSILSRIFLESAKDEGGCLQSTIGDFASIADK-EIVTRLFKRT-MHRLLEATQEAGKTKSTR 704 (1276)
Q Consensus 627 ~~~A~~nl~~L~~~A~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~-~~l~~~f~~~-~~kL~~~~~~~~~~~~~~ 704 (1276)
-..++++.+.+.-.... .+....++++...++.. ..+..+|..- +..|......
T Consensus 116 -------------~~~~l~~~i~~~L~~~d---~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~-------- 171 (503)
T PF10508_consen 116 -------------VDNELLPLIIQCLRDPD---LSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQ-------- 171 (503)
T ss_pred -------------cCccHHHHHHHHHcCCc---HHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhc--------
Confidence 01345666666554432 22233455555544432 2333343322 3444433311
Q ss_pred CCCcccccCCCCCCCchhhHhHHHHHHHHHcCCCChhhHHH-----HHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcc-
Q 039448 705 KSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLNAKEIDV-----LFVAIKPALQDDEGLIQKKAYKVLSTILRKCDG- 778 (1276)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~llDL~~alv~~l~~~~~~~-----Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~- 778 (1276)
+.+..|..++++++-+...= ++..+. +|+.+...++++|..+|.-+-.+|..+++...+
T Consensus 172 --------------~~~~vR~Rv~el~v~i~~~S-~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~ 236 (503)
T PF10508_consen 172 --------------SSDIVRCRVYELLVEIASHS-PEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGL 236 (503)
T ss_pred --------------cCHHHHHHHHHHHHHHHhcC-HHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHH
Confidence 12357889999988886543 332222 555556667889999999999999999995433
Q ss_pred -hhhhh--HHHHHHHHHhhCCCCCccchHHHHHHHHH--HHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHH
Q 039448 779 -FLSSR--LEELLGLMIEVLPSCHFSAKRHRLDCLYF--IIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAY 853 (1276)
Q Consensus 779 -f~~~~--~~el~~~L~~~~~~~~~~ak~~RL~cL~~--lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~ 853 (1276)
|+.+. ++.|.+++.+... .| +-..+.+... +...+... ++.......|.|+.-+.=..-..+...|..|+
T Consensus 237 ~yL~~~gi~~~L~~~l~~~~~---dp-~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~ 311 (503)
T PF10508_consen 237 QYLEQQGIFDKLSNLLQDSEE---DP-RLSSLLLPGRMKFFGNLARV-SPQEVLELYPAFLERLFSMLESQDPTIREVAF 311 (503)
T ss_pred HHHHhCCHHHHHHHHHhcccc---CC-cccchhhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 54432 3444444444422 12 1111111111 11111111 11123344456555544344556777899999
Q ss_pred HHHHHHHHHhccCC--CCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhh-----hhHHHHHhhhH-----
Q 039448 854 DVLVQIGRAFGDEE--NGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSD-----LVSNVYKLLPS----- 921 (1276)
Q Consensus 854 ~lLv~mg~~~~~~~--~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d-----~i~~~~~ll~~----- 921 (1276)
|.|=.||....... .-.....+..++..+.+.....+..+.-+++-||+.++.-..+ .......++..
T Consensus 312 dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~ 391 (503)
T PF10508_consen 312 DTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSP 391 (503)
T ss_pred HHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCc
Confidence 99999987443210 0123456777888887777766678999999999999876643 11112233332
Q ss_pred ---HH-HHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhh-HHHHHHHHHHHHHHHHH
Q 039448 922 ---TF-LLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDT-KNQFKSKIKLLLEMLVK 988 (1276)
Q Consensus 922 ---v~-llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~-k~hfR~KVr~IlerLIR 988 (1276)
++ .+++.+=.||--|+++|++.++..-=.-..--.-|.+++=|+.=+.|. |...-. =..|+.+|++
T Consensus 392 ~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~-K~~ii~~l~~ 462 (503)
T PF10508_consen 392 LSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEA-KYDIIKALAK 462 (503)
T ss_pred hHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHH-HHHHHHHHHh
Confidence 22 355566699999999999987755211111122366677666655443 322222 2345555554
No 8
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.06 E-value=1.1 Score=55.75 Aligned_cols=234 Identities=17% Similarity=0.174 Sum_probs=142.2
Q ss_pred hhhHHHHHHhhccCCchhHHHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHH
Q 039448 152 VSQLYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLD 231 (1276)
Q Consensus 152 ~~~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~ 231 (1276)
++.+|-.++.+.....+.+||-+.-++..+... .+...-.+.+.+.+-+. . ......-.+|.
T Consensus 40 ~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~------~~~~~~l~~n~l~kdl~-----------~-~n~~~~~lAL~ 101 (526)
T PF01602_consen 40 ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHE------DPELLILIINSLQKDLN-----------S-PNPYIRGLALR 101 (526)
T ss_dssp -GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTT------SHHHHHHHHHHHHHHHC-----------S-SSHHHHHHHHH
T ss_pred CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc------chhHHHHHHHHHHHhhc-----------C-CCHHHHHHHHh
Confidence 446888899999999999999999999988853 12234444555544431 0 12233344444
Q ss_pred HHHhhccCCCchhHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCCCchhhHHHH
Q 039448 232 ALKECLPLMSTKYTAVILKYFKTLLELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFT 311 (1276)
Q Consensus 232 lLk~~l~~~~~~~~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~ 311 (1276)
.|-.+. .+.....+...+..+++-++|+|...|.-++..+|...++.+... +.+.|..+.. +. + ...+..
T Consensus 102 ~l~~i~---~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~lL~---d~-~-~~V~~~- 171 (526)
T PF01602_consen 102 TLSNIR---TPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQLLS---DK-D-PSVVSA- 171 (526)
T ss_dssp HHHHH----SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHHTT---HS-S-HHHHHH-
T ss_pred hhhhhc---ccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhhcc---CC-c-chhHHH-
Confidence 444444 667888899999999999999999999999999998766554333 4444444321 11 1 222222
Q ss_pred HHHHHHHHHHHH--hcCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCC
Q 039448 312 ARLLNVGMIKIY--SINREICSTKLPIVFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARK 389 (1276)
Q Consensus 312 ~~vl~~a~~~l~--~~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~ 389 (1276)
|...+. +.++.....-+|.++..+...+....+-+...+.+.|. .+...
T Consensus 172 ------a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~----~~~~~------------------- 222 (526)
T PF01602_consen 172 ------ALSLLSEIKCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLR----RYAPM------------------- 222 (526)
T ss_dssp ------HHHHHHHHHCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHT----TSTSS-------------------
T ss_pred ------HHHHHHHHccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHH----hcccC-------------------
Confidence 333333 33555544778999999988888888777665555554 22211
Q ss_pred CChHHH--HHHHHHHHhhhhcchhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhhc
Q 039448 390 SGPTVI--EKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQN 448 (1276)
Q Consensus 390 ~~~~~i--~~i~~~~~~~L~~~y~~aw~~vL~vl~~lf~~lg~~~~~~l~~~L~~l~~lr~ 448 (1276)
.+..- ..++..+...|+ ...+.-++..+..++ .+.... +.+..++..|..+-.
T Consensus 223 -~~~~~~~~~~i~~l~~~l~---s~~~~V~~e~~~~i~-~l~~~~-~~~~~~~~~L~~lL~ 277 (526)
T PF01602_consen 223 -EPEDADKNRIIEPLLNLLQ---SSSPSVVYEAIRLII-KLSPSP-ELLQKAINPLIKLLS 277 (526)
T ss_dssp -SHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-HHSSSH-HHHHHHHHHHHHHHT
T ss_pred -ChhhhhHHHHHHHHHHHhh---ccccHHHHHHHHHHH-Hhhcch-HHHHhhHHHHHHHhh
Confidence 11111 345555555555 334445555555555 333322 367777788887765
No 9
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.28 Score=60.69 Aligned_cols=203 Identities=14% Similarity=0.089 Sum_probs=140.2
Q ss_pred hhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHH--HHHHHHHhhCCCCCccchH-HHHHHHHHHHHhccCCChHHHHh
Q 039448 751 KPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLE--ELLGLMIEVLPSCHFSAKR-HRLDCLYFIIAHVSKDDSEQRRS 827 (1276)
Q Consensus 751 ~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~--el~~~L~~~~~~~~~~ak~-~RL~cL~~lv~~l~~~~~~~~~~ 827 (1276)
...+...+...|++|=..+..+... +...++. .++..+......-.+..++ .-+-+......++-+. ..
T Consensus 140 ~~ll~~~~~~~~~~aa~~~ag~v~g---~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~-----~E 211 (569)
T KOG1242|consen 140 LELLTSTKIAERAGAAYGLAGLVNG---LGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPP-----FE 211 (569)
T ss_pred HHHhccccHHHHhhhhHHHHHHHcC---cHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCC-----CC
Confidence 3444455667777777766666542 2111111 1222333322222222222 1233333343444332 24
Q ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHH
Q 039448 828 YILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYE 907 (1276)
Q Consensus 828 ~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~e 907 (1276)
..+..++|.|..|.=+...+.|.+|.+....|-+.+-. .++..|+.-...++--..=.-+.|++-.|+.+.|-
T Consensus 212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~-------~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ 284 (569)
T KOG1242|consen 212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA-------YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADC 284 (569)
T ss_pred chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc-------chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999887743 45667765555444322233467888888888887
Q ss_pred hhhhhH-HHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcc
Q 039448 908 FSDLVS-NVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQ 968 (1276)
Q Consensus 908 f~d~i~-~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws 968 (1276)
=.++++ .+.++++.+.--|..-..||-+++++-+.-+..+.....+++++|.++++|..-+
T Consensus 285 ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~ 346 (569)
T KOG1242|consen 285 APKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPS 346 (569)
T ss_pred chHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcc
Confidence 777777 4779999998999999999999999999999999999999999999999996665
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.91 E-value=2.5 Score=54.67 Aligned_cols=797 Identities=13% Similarity=0.132 Sum_probs=391.3
Q ss_pred ChhhhhHHhhccCCCChHHhH----HHHHHHHHHHHHHhhCCCCCChHhHHHHHHhhh-hhhhCCCCCCCCchhHHHHHH
Q 039448 17 DVDLCSSILSRFSSSAQEEHQ----HLCAAIGAMSQELKDQNLPLTPISYFGATCSSL-DRLLSSPDPDRSSHIIGSLST 91 (1276)
Q Consensus 17 ~~d~~~~i~~r~~~S~~~~~k----~~~avLaAv~e~i~~q~~~~t~t~YFaAlms~L-~~~~~~~~~~~~~~~~~a~ly 91 (1276)
-+.+|.+|..++..+.+ .|. -.|.||--+.+++...|+=-++ +-..++.+| .+.... -..+--=++|
T Consensus 125 a~tV~~~~t~~l~~~i~-~qe~~sai~~e~lDil~d~lsr~g~ll~~--fh~~il~~l~~ql~s~-----R~aVrKkai~ 196 (1233)
T KOG1824|consen 125 AATVCKRITPKLKQAIS-KQEDVSAIKCEVLDILADVLSRFGTLLPN--FHLSILKCLLPQLQSP-----RLAVRKKAIT 196 (1233)
T ss_pred ccHHHHHHHHHHHHHhh-hcccchhhHHHHHHHHHHHHHhhcccCcc--hHHHHHHHHhhcccCh-----HHHHHHHHHH
Confidence 35677777655444322 222 3477777788888777755544 444444433 222110 0122223344
Q ss_pred HhhhhccCcChHHHhhhhhhHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhccCCCCCcchhhHHHHHHhhc---cCCch
Q 039448 92 ILSLLLPKISVAVLKKKGDFLTDLVVRVVRLSSVTAGAVASGLTSLSRLLTGRGRVNWSDVSQLYGVVLAFM---TDSRL 168 (1276)
Q Consensus 92 LL~lv~p~vP~~vLr~kf~~~~~~l~~~l~~~~~~~~~lRs~i~CL~~LL~aqd~~~W~~~~~~~~~LL~f~---~d~RP 168 (1276)
.|+-+.-..|.- -|..+.+.|.+=|.. .+....+|..|.||+.+.|+....-=++.....-.+..+| =..--
T Consensus 197 ~l~~la~~~~~~----ly~~li~~Ll~~L~~-~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dD 271 (1233)
T KOG1824|consen 197 ALGHLASSCNRD----LYVELIEHLLKGLSN-RTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDD 271 (1233)
T ss_pred HHHHHHHhcCHH----HHHHHHHHHHhccCC-CCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcH
Confidence 443333333332 345555555555543 3677899999999999999987754444444444555666 22333
Q ss_pred hHHHHHHHHHHHHHhccCCCC-CccchhHHHHHHHHHHHHHhCC----CCC-----CcCCC-----------Ccch----
Q 039448 169 KVRRQSHLCVREILLSLQGTL-VLAPASEAITNMFEKFLLLAGG----SNT-----SADEK-----------PKGA---- 223 (1276)
Q Consensus 169 KVRK~Aq~av~~IL~~~~~~p-~~hpas~~~a~~~~~~l~~~~~----s~~-----~~~~~-----------~~~~---- 223 (1276)
-.|...-+|+...|.- .| ..-|--+.+...|.+++.--.+ .+. -.++. ..+.
T Consensus 272 ELrE~~lQale~fl~r---cp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkV 348 (1233)
T KOG1824|consen 272 ELREYCLQALESFLRR---CPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKV 348 (1233)
T ss_pred HHHHHHHHHHHHHHHh---ChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHH
Confidence 4888888888888762 23 4567777888889988831111 100 00000 0000
Q ss_pred -hHHHHHHHHHHhhccCCCchhHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCCC---CCC-----------C-----
Q 039448 224 -QEVLYVLDALKECLPLMSTKYTAVILKYFKTLLELRQPLVTRRVTDALNVICLHPT---LEV-----------S----- 283 (1276)
Q Consensus 224 -~~~lh~L~lLk~~l~~~~~~~~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~---~~l-----------~----- 283 (1276)
..+..++..+-.--+-+=+....++++.+..=+.=+..-|..-+|+++-+||..-+ +.+ +
T Consensus 349 RRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~ 428 (1233)
T KOG1824|consen 349 RRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSM 428 (1233)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHH
Confidence 23444444333222222333444555555544444667777788888888885332 111 1
Q ss_pred -HHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCHhHHhhhhhHHHHHHHHHhc--CCchhHHHHHHHHH
Q 039448 284 -AEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINREICSTKLPIVFNALKDILA--SEHEEAIFAATEAL 360 (1276)
Q Consensus 284 -~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~~~c~~~LP~~f~~~~~~l~--S~~~~v~~~as~~L 360 (1276)
.+....|+.++.+-.. .++..+..-... -+..+...-|..-.+++|..+..+..-|. |...+...-+--+|
T Consensus 429 L~~~~~~iVkai~~qlr--~ks~kt~~~cf~----lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl 502 (1233)
T KOG1824|consen 429 LSDQVPLIVKAIQKQLR--EKSVKTRQGCFL----LLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFL 502 (1233)
T ss_pred HHhhhHHHHHHHHHHHh--hccccchhhHHH----HHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHH
Confidence 1223334444433221 111111110000 01123333455555666666665554443 44455555555666
Q ss_pred HHHHHHhhchhHHhhhcccccccCCCcCCCChHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHhhcccc-------h
Q 039448 361 KNLINACIDESLIKQGVDQITNVNSDARKSGPTVIEKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYS-------S 433 (1276)
Q Consensus 361 ~~li~~ci~~~~~~~~v~~~~~~~~~~~~~~~~~i~~i~~~~~~~L~~~y~~aw~~vL~vl~~lf~~lg~~~-------~ 433 (1276)
.++|..|=++.. . ..+..+...+.....-+|.....+.|.|...+...+++.. .
T Consensus 503 ~~~L~s~~p~~f------------------h-p~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~ 563 (1233)
T KOG1824|consen 503 YSALISHPPEVF------------------H-PHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDAS 563 (1233)
T ss_pred HHHHhcCChhhc------------------c-cchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCC
Confidence 666655543321 1 2233344444445566788888999999999999998763 3
Q ss_pred hhHHHHHH-HHHhhhcCCCCCCcchhHHHHHHHHHHHhcChhhHhhcccCccccCcccccccchhhhhhhccCCCChHhH
Q 039448 434 YFMRGALK-NLADMQNLPDEDFPYRKQLHECVGSAVGSMGPETFLCLLPLKLEASDLSEVNVWLFPILKQYIIGARLNFF 512 (1276)
Q Consensus 434 ~~l~~~L~-~l~~lr~~~~~~f~~~~~ld~~iGaAi~amGPe~vL~~lPLnl~~~~~~~~RaWLLPlLr~~i~~t~L~fF 512 (1276)
|++.+++. ++..|+. .+-+-.-|..+=.|+|.-|..|| -+|+. ..+| -||+|-+-+.|.
T Consensus 564 ~~v~~m~~~tl~rL~a-~d~DqeVkeraIscmgq~i~~fg--D~l~~----------eL~~--~L~il~eRl~nE----- 623 (1233)
T KOG1824|consen 564 PYVKTMYDCTLQRLKA-TDSDQEVKERAISCMGQIIANFG--DFLGN----------ELPR--TLPILLERLGNE----- 623 (1233)
T ss_pred hhHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHh--hhhhh----------hhHH--HHHHHHHHHhch-----
Confidence 67777663 4556665 23466778888889999999999 33321 1111 256655443321
Q ss_pred HHHHHHHHHHHHHHhHHhhhhccchhhhhHHHHHHHHHhhhhCCCCCCcc--hhhhHHHHHHHHHHHhcc-CcccHHHHH
Q 039448 513 MEKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLPSFCNYPVD--TAESFMDLAGVLCSALHE-ENDIRGIIC 589 (1276)
Q Consensus 513 ~~~~lPLa~~~~~k~~~~~~~~~~~~ak~~~tL~~QlWsLLPgFC~~P~D--~~~sF~~lA~~L~~~L~~-~~~LR~~Ic 589 (1276)
. .+...+|-+..+ ...|+| +......+-+.|++.+.. +-.||..-.
T Consensus 624 --------------i------TRl~AvkAlt~I-----------a~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l 672 (1233)
T KOG1824|consen 624 --------------I------TRLTAVKALTLI-----------AMSPLDIDLSPVLTEILPELASFLRKNQRALRLATL 672 (1233)
T ss_pred --------------h------HHHHHHHHHHHH-----------HhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 001111111111 113554 344556666666677664 566888888
Q ss_pred HHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHHHHHHHhhcCCCccccccHHHHHHH
Q 039448 590 SSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLSILSRIFLESAKDEGGCLQSTIGD 669 (1276)
Q Consensus 590 ~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~vLfNvy~~~~~~~~~~~~~tI~a 669 (1276)
.++-.|++.... . .+-...+. .-..+++=..+ -..+++.+|-.||..|+-.|.+..-..++.++++|-.
T Consensus 673 ~a~~~L~~~~~~----~-~~~~~~e~-----vL~el~~Lise-sdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ 741 (1233)
T KOG1824|consen 673 TALDKLVKNYSD----S-IPAELLEA-----VLVELPPLISE-SDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIR 741 (1233)
T ss_pred HHHHHHHHHHhc----c-ccHHHHHH-----HHHHhhhhhhH-HHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHH
Confidence 888888866311 0 00000000 00001100001 1234556666677777666655544444555544433
Q ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHhHHHHHHHHHcCCCChhh-HHHHHH
Q 039448 670 FASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLNAKE-IDVLFV 748 (1276)
Q Consensus 670 y~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv~~l~~~~-~~~Lf~ 748 (1276)
.++ +..++.-=.+++..+.+ |+|..-.++- +..+++
T Consensus 742 ll~---Spllqg~al~~~l~~f~----------------------------------------alV~t~~~~l~y~~l~s 778 (1233)
T KOG1824|consen 742 LLR---SPLLQGGALSALLLFFQ----------------------------------------ALVITKEPDLDYISLLS 778 (1233)
T ss_pred Hhh---CccccchHHHHHHHHHH----------------------------------------HHHhcCCCCccHHHHHH
Confidence 332 22333333333333333 3332222211 333333
Q ss_pred HH-hhhhcCCchhhhhHHHHHHHHHHh----c------------------------------------CcchhhhhHHHH
Q 039448 749 AI-KPALQDDEGLIQKKAYKVLSTILR----K------------------------------------CDGFLSSRLEEL 787 (1276)
Q Consensus 749 ~~-~~~l~~~d~~~QKKAYk~L~~i~~----~------------------------------------~~~f~~~~~~el 787 (1276)
.. .|+......++.|.||--|..... . +.++......++
T Consensus 779 ~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~~~e~ 858 (1233)
T KOG1824|consen 779 LLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSPQNEL 858 (1233)
T ss_pred HHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCcchhh
Confidence 22 222211122334444433332111 1 111222334556
Q ss_pred HHHHHhhCCCCCccchHHHHHHHHHH------------HHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 039448 788 LGLMIEVLPSCHFSAKRHRLDCLYFI------------IAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDV 855 (1276)
Q Consensus 788 ~~~L~~~~~~~~~~ak~~RL~cL~~l------------v~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~l 855 (1276)
..++++.+.+-+.--|+.--.+|-.+ +..+-.+. ....++-.-+-|+|...+-. .-+..+-++
T Consensus 859 ~~~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqp---k~QyLLLhSlkevi~~~svd--~~~~~v~~I 933 (1233)
T KOG1824|consen 859 KDTIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQP---KRQYLLLHSLKEVIVSASVD--GLKPYVEKI 933 (1233)
T ss_pred HHHHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcch---HhHHHHHHHHHHHHHHhccc--hhhhhHHHH
Confidence 66666665543322222211111111 11111111 11233333444555443321 223333333
Q ss_pred HHHHHHHhccCCCCCC---------------cccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHH-HHHhh
Q 039448 856 LVQIGRAFGDEENGGG---------------KENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSN-VYKLL 919 (1276)
Q Consensus 856 Lv~mg~~~~~~~~~~~---------------~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~-~~~ll 919 (1276)
.-.+-+-++..+ ++. +++|-.=+. .-+.++.|++.|..|+|.-..+-+...-++. +.+-+
T Consensus 934 W~lL~k~cE~~e-egtR~vvAECLGkL~l~epesLlpkL~---~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk~~i 1009 (1233)
T KOG1824|consen 934 WALLFKHCECAE-EGTRNVVAECLGKLVLIEPESLLPKLK---LLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLKQQI 1009 (1233)
T ss_pred HHHHHHhcccch-hhhHHHHHHHhhhHHhCChHHHHHHHH---HHhcCCCcchhhhhhheeeeeecCCCCccCHHHHHHH
Confidence 333333232211 111 222222222 2345567889998888765443333334443 44556
Q ss_pred hHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcch
Q 039448 920 PSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQD 969 (1276)
Q Consensus 920 ~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~ 969 (1276)
..-+-+++...++|-+.+|.-+--+++-=| .+++.-||+++|+|-.-+.
T Consensus 1010 g~fl~~~~dpDl~VrrvaLvv~nSaahNKp-slIrDllpeLLp~Ly~eTk 1058 (1233)
T KOG1824|consen 1010 GDFLKLLRDPDLEVRRVALVVLNSAAHNKP-SLIRDLLPELLPLLYSETK 1058 (1233)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHccCH-hHHHHHHHHHHHHHHHhhh
Confidence 666778999999999999987777776655 6788888999998865444
No 11
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.81 E-value=0.31 Score=60.54 Aligned_cols=292 Identities=12% Similarity=0.198 Sum_probs=177.2
Q ss_pred HHHHHHHHHHhcc-CcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHh-HH
Q 039448 568 MDLAGVLCSALHE-ENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARE-LL 645 (1276)
Q Consensus 568 ~~lA~~L~~~L~~-~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n-~L 645 (1276)
..+.+.+...|.+ +|.+|...+-++..+....... ... |+
T Consensus 113 ~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~--------------------------------------~~~~~~ 154 (526)
T PF01602_consen 113 EPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL--------------------------------------VEDELI 154 (526)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC--------------------------------------HHGGHH
T ss_pred hHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH--------------------------------------HHHHHH
Confidence 4455555555554 6888888888888887663111 112 78
Q ss_pred HHHHHhhcCCCccccccHHHHHHHhhcc-CCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhH
Q 039448 646 SILSRIFLESAKDEGGCLQSTIGDFASI-ADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMR 724 (1276)
Q Consensus 646 ~vLfNvy~~~~~~~~~~~~~tI~ay~sI-~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1276)
+.|.++..... .+....++.++..| .+++....++..+...|..... .+.+...
T Consensus 155 ~~l~~lL~d~~---~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~L~~~l~----------------------~~~~~~q 209 (526)
T PF01602_consen 155 PKLKQLLSDKD---PSVVSAALSLLSEIKCNDDSYKSLIPKLIRILCQLLS----------------------DPDPWLQ 209 (526)
T ss_dssp HHHHHHTTHSS---HHHHHHHHHHHHHHHCTHHHHTTHHHHHHHHHHHHHT----------------------CCSHHHH
T ss_pred HHHhhhccCCc---chhHHHHHHHHHHHccCcchhhhhHHHHHHHhhhccc----------------------ccchHHH
Confidence 88888885543 34556788888888 7777644555555555544330 0455778
Q ss_pred hHHHHHHHHHcCCCChhhH-HHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccch
Q 039448 725 ARLFDLALSLLPGLNAKEI-DVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAK 803 (1276)
Q Consensus 725 ~~llDL~~alv~~l~~~~~-~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak 803 (1276)
..++.++..+.+.-+...- ..+++.+.+.+++.+..++--+-+++..+..... .+..+.+.|...+.+.. .
T Consensus 210 ~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~-----~~~~~~~~L~~lL~s~~---~ 281 (526)
T PF01602_consen 210 IKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE-----LLQKAINPLIKLLSSSD---P 281 (526)
T ss_dssp HHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH-----HHHHHHHHHHHHHTSSS---H
T ss_pred HHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH-----HHHhhHHHHHHHhhccc---c
Confidence 8888888877766555542 4567777777777777777666666665544221 22333444444444222 3
Q ss_pred HHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHH
Q 039448 804 RHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALK-EANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMV 882 (1276)
Q Consensus 804 ~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~K-e~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV 882 (1276)
-.|.-+|..|. .+..... .++. ...-++.+++ +.+.-.|..|.++|..+++ +.++.+.+.-+
T Consensus 282 nvr~~~L~~L~-~l~~~~~-----~~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~----------~~n~~~Il~eL 344 (526)
T PF01602_consen 282 NVRYIALDSLS-QLAQSNP-----PAVF-NQSLILFFLLYDDDPSIRKKALDLLYKLAN----------ESNVKEILDEL 344 (526)
T ss_dssp HHHHHHHHHHH-HHCCHCH-----HHHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH------------HHHHHHHHHHH
T ss_pred hhehhHHHHHH-Hhhcccc-----hhhh-hhhhhhheecCCCChhHHHHHHHHHhhccc----------ccchhhHHHHH
Confidence 34444554443 2222221 2232 2222455667 8889999999999999988 34566666655
Q ss_pred hhhcc-CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcCh
Q 039448 883 AGGLA-GESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHA 950 (1276)
Q Consensus 883 ~aGLa-G~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~ 950 (1276)
...+. ...+++....|.+++.+.-.|... ....++.++-+|..++..+...++..++-.+..-|.
T Consensus 345 ~~~l~~~~d~~~~~~~i~~I~~la~~~~~~---~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~ 410 (526)
T PF01602_consen 345 LKYLSELSDPDFRRELIKAIGDLAEKFPPD---AEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNNPE 410 (526)
T ss_dssp HHHHHHC--HHHHHHHHHHHHHHHHHHGSS---HHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTT
T ss_pred HHHHHhccchhhhhhHHHHHHHHHhccCch---HHHHHHHHHHhhhhccccccchHHHHHHHHhhcChh
Confidence 55663 336889999999999999998432 234445556666666666666666666666666553
No 12
>PTZ00429 beta-adaptin; Provisional
Probab=96.67 E-value=1.8 Score=56.31 Aligned_cols=205 Identities=10% Similarity=0.150 Sum_probs=125.4
Q ss_pred hhhHhHHHHHHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCc-chhhhhHHHHHHHHHhhCCCCC
Q 039448 721 DFMRARLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCD-GFLSSRLEELLGLMIEVLPSCH 799 (1276)
Q Consensus 721 ~~~~~~llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~-~f~~~~~~el~~~L~~~~~~~~ 799 (1276)
+.....+||++....|.-+ +....+++.+.|.|++.++.+-=-|-|++-.+...+. ..+..-+..+...++.. .+..
T Consensus 233 EW~Qi~IL~lL~~y~P~~~-~e~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~ 310 (746)
T PTZ00429 233 EWGQLYILELLAAQRPSDK-ESAETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRD 310 (746)
T ss_pred hHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCC
Confidence 3567789999977666433 3355677778888888888887777777776655331 22222222222322222 2223
Q ss_pred ccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHH
Q 039448 800 FSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILAL-KEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQF 878 (1276)
Q Consensus 800 ~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~-Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef 878 (1276)
+..+--=|+.|..++..-| .++..- -++..|. .|.+- .|..+.++|..|++ +.++.+.
T Consensus 311 ~eiqyvaLr~I~~i~~~~P---------~lf~~~-~~~Ff~~~~Dp~y-IK~~KLeIL~~Lan----------e~Nv~~I 369 (746)
T PTZ00429 311 AETQYIVCKNIHALLVIFP---------NLLRTN-LDSFYVRYSDPPF-VKLEKLRLLLKLVT----------PSVAPEI 369 (746)
T ss_pred ccHHHHHHHHHHHHHHHCH---------HHHHHH-HHhhhcccCCcHH-HHHHHHHHHHHHcC----------cccHHHH
Confidence 3334444444444442211 112222 2334344 78775 89999999999876 3556666
Q ss_pred HHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhH
Q 039448 879 FNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEG 952 (1276)
Q Consensus 879 ~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~ 952 (1276)
+.=+........+++...+|.|++++.-.|..... ..++..+-||.. +-+++-.++-.+|-++...|...
T Consensus 370 L~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~---~cV~~Ll~ll~~-~~~~v~e~i~vik~IlrkyP~~~ 439 (746)
T PTZ00429 370 LKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAP---DCANLLLQIVDR-RPELLPQVVTAAKDIVRKYPELL 439 (746)
T ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHH---HHHHHHHHHhcC-CchhHHHHHHHHHHHHHHCccHH
Confidence 65555555666789999999999999988855433 333333455544 44667678888998888888753
No 13
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.61 E-value=1.8 Score=54.25 Aligned_cols=257 Identities=15% Similarity=0.145 Sum_probs=158.3
Q ss_pred CchhHHHHHHHhhhhccCcChHHHhhhhhhHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhccCC-CCCcchhhHHHHHH
Q 039448 82 SSHIIGSLSTILSLLLPKISVAVLKKKGDFLTDLVVRVVRLSSVTAGAVASGLTSLSRLLTGRGR-VNWSDVSQLYGVVL 160 (1276)
Q Consensus 82 ~~~~~~a~lyLL~lv~p~vP~~vLr~kf~~~~~~l~~~l~~~~~~~~~lRs~i~CL~~LL~aqd~-~~W~~~~~~~~~LL 160 (1276)
+.+.+..++.+|..++...+..-+ ..+....|...|.+++ +.+-+.++..|+.++..-+. ..|-.-...|..++
T Consensus 51 ~~e~v~~~~~iL~~~l~~~~~~~l---~~~~~~~L~~gL~h~~--~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~ 125 (503)
T PF10508_consen 51 NREQVELICDILKRLLSALSPDSL---LPQYQPFLQRGLTHPS--PKVRRLALKQLGRIARHSEGAAQLLVDNELLPLII 125 (503)
T ss_pred ChHHHHHHHHHHHHHHhccCHHHH---HHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHH
Confidence 456778888999999977766665 4555566667777533 34444556777777655433 23333334888999
Q ss_pred hhccCCchhHHHHHHHHHHHHHhccCCCCCccchhHHHH-HHHHHHHH-HhCCCCCCcCCCCcchhHHHHHHHHHHhhcc
Q 039448 161 AFMTDSRLKVRRQSHLCVREILLSLQGTLVLAPASEAIT-NMFEKFLL-LAGGSNTSADEKPKGAQEVLYVLDALKECLP 238 (1276)
Q Consensus 161 ~f~~d~RPKVRK~Aq~av~~IL~~~~~~p~~hpas~~~a-~~~~~~l~-~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~ 238 (1276)
..--|+...|-+.|-.++..+.++... -+.+. .-....+. ..... ....-++++.++-.+..
T Consensus 126 ~~L~~~d~~Va~~A~~~L~~l~~~~~~-------~~~l~~~~~~~~L~~l~~~~---------~~~vR~Rv~el~v~i~~ 189 (503)
T PF10508_consen 126 QCLRDPDLSVAKAAIKALKKLASHPEG-------LEQLFDSNLLSKLKSLMSQS---------SDIVRCRVYELLVEIAS 189 (503)
T ss_pred HHHcCCcHHHHHHHHHHHHHHhCCchh-------HHHHhCcchHHHHHHHHhcc---------CHHHHHHHHHHHHHHHh
Confidence 999999999999999999998864211 11110 00111121 11110 12344677777777765
Q ss_pred CCCchhHHH-----HHHHHHHhhccCchhHHHHHHHHHHHHhcCCCCC--CCHHHHHHHHHHhcccCCCCCCchhhHHHH
Q 039448 239 LMSTKYTAV-----ILKYFKTLLELRQPLVTRRVTDALNVICLHPTLE--VSAEALLDLLCSLALSVSTNETSADAMTFT 311 (1276)
Q Consensus 239 ~~~~~~~~~-----i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~--l~~~~~~~li~aL~~~~~~~~~~~~~l~~~ 311 (1276)
. ++..... +.+.++..++-.++++..+|+++|..|..++..- +...-+.+.|..+.......++... +...
T Consensus 190 ~-S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~-~~l~ 267 (503)
T PF10508_consen 190 H-SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSS-LLLP 267 (503)
T ss_pred c-CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccc-hhhh
Confidence 4 4443333 3445555555589999999999999998844311 1111122222222221111121122 2222
Q ss_pred HHHHHHHHHHHHhcCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 039448 312 ARLLNVGMIKIYSINREICSTKLPIVFNALKDILASEHEEAIFAATEALKNL 363 (1276)
Q Consensus 312 ~~vl~~a~~~l~~~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~l 363 (1276)
. .| ..+.+++..+|..+....|.+++.+.+++.|..+..+..|-++|-.+
T Consensus 268 g-~~-~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~i 317 (503)
T PF10508_consen 268 G-RM-KFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQI 317 (503)
T ss_pred h-HH-HHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 1 11 36677888899999999999999999999999999999999999633
No 14
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=96.52 E-value=0.079 Score=58.59 Aligned_cols=181 Identities=15% Similarity=0.200 Sum_probs=121.1
Q ss_pred CCchhhhhHHHHHHHHHHhcC--cchhhhh---HHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhH
Q 039448 756 DDEGLIQKKAYKVLSTILRKC--DGFLSSR---LEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYIL 830 (1276)
Q Consensus 756 ~~d~~~QKKAYk~L~~i~~~~--~~f~~~~---~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i 830 (1276)
+.|=..+..|..-|..++..+ ..+.... +.++...+...+.+.-+.--+.=+.|+..+..++... ...++
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~-----~~~~~ 92 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH-----FEPYA 92 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG-----GHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh-----HHHHH
Confidence 345566788999999999866 3343333 3333355555555555555566677888888776543 24679
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHH-HHHHhhhccCCChhHHHHHHHHHHHHHHHhh
Q 039448 831 SSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQF-FNMVAGGLAGESPHMISAAVKGLARLAYEFS 909 (1276)
Q Consensus 831 ~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef-~~mV~aGLaG~tphMiSatI~ALsrLl~ef~ 909 (1276)
..++|-++-.+.+.|.-.|+.|..+|..|.+.+. ..... +.++..|+...+|.+...+...|..++-.++
T Consensus 93 ~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 93 DILLPPLLKKLGDSKKFIREAANNALDAIIESCS---------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999998553 12355 7788899999999999999999999999988
Q ss_pred ---hhhHH---HHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcCh
Q 039448 910 ---DLVSN---VYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHA 950 (1276)
Q Consensus 910 ---d~i~~---~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~ 950 (1276)
..+.. +.++.+.+..+|...+.||.+++-.-+-.+....|.
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 33332 467888889999999999999998877777666653
No 15
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.28 E-value=0.26 Score=57.67 Aligned_cols=202 Identities=17% Similarity=0.135 Sum_probs=110.7
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHH
Q 039448 155 LYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALK 234 (1276)
Q Consensus 155 ~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk 234 (1276)
-+...+....+.|.|.|..|-++++.+|.+....-..+.-...+...|++.+. .+.+++..-++|+++||-
T Consensus 44 ~L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lk---------kg~~~E~~lA~~~l~Ll~ 114 (309)
T PF05004_consen 44 KLKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLK---------KGKSEEQALAARALALLA 114 (309)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhc---------cCCHHHHHHHHHHHHHHh
Confidence 46677777789999999999999999997421110111111222233333331 112246677888899887
Q ss_pred hhcc--CCCchhHHHHHHHHHHhhccC--chhHHHHHHHHHHHH-hcCCCCCCCHHH---HHHHHHH-hcccCCCCC---
Q 039448 235 ECLP--LMSTKYTAVILKYFKTLLELR--QPLVTRRVTDALNVI-CLHPTLEVSAEA---LLDLLCS-LALSVSTNE--- 302 (1276)
Q Consensus 235 ~~l~--~~~~~~~~~i~~~ll~Ll~l~--n~~lt~~~~~~~~~l-f~~~~~~l~~~~---~~~li~a-L~~~~~~~~--- 302 (1276)
-.+. .-.......+.+.|..++.-+ .+-+...|..+|-.+ |-+..+.-.... ..+.|+. .++. .+.+
T Consensus 115 ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~-~~~~~~~ 193 (309)
T PF05004_consen 115 LTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILK-SDGNAPV 193 (309)
T ss_pred hhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcC-cCCCccc
Confidence 7764 223445556666666666654 334556777777554 444433333332 3332222 2221 1111
Q ss_pred -CchhhHHHHHHHHHHHHHHHH-hcCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhh
Q 039448 303 -TSADAMTFTARLLNVGMIKIY-SINREICSTKLPIVFNALKDILASEHEEAIFAATEALKNLINACI 368 (1276)
Q Consensus 303 -~~~~~l~~~~~vl~~a~~~l~-~~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci 368 (1276)
...+.-++.+..|+ |...|. .+++..-...+...+..++.+|.|++.+|+.+|.++|- +|.+..
T Consensus 194 ~~~~~~~~l~~aAL~-aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiA-ll~E~~ 259 (309)
T PF05004_consen 194 VAAEDDAALVAAALS-AWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIA-LLYELA 259 (309)
T ss_pred ccCCCccHHHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHh
Confidence 00111111111122 333333 34443333556777788889999999999999999995 555433
No 16
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.22 E-value=0.068 Score=57.34 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHH
Q 039448 845 NKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFL 924 (1276)
Q Consensus 845 N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~l 924 (1276)
|...|.++.-.|-.++.++ +.-++.|+..+++.|.-.+|.+.-.|+..|++|+-+ |.+..-.+++..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~--------~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~--d~ik~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRY--------PNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE--DMIKVKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhC--------cHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc--CceeehhhhhHHHHH
Confidence 4567888877777777766 356889999999999999999999999999999876 444434455677778
Q ss_pred HhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcc
Q 039448 925 LLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQ 968 (1276)
Q Consensus 925 lL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws 968 (1276)
+|...|.+|...|.-|..=+........+.+++++++..|-.+.
T Consensus 71 ~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~ 114 (178)
T PF12717_consen 71 LLVDENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCY 114 (178)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCcc
Confidence 88999999999999888888888778889999999999998874
No 17
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=95.92 E-value=6.2 Score=48.17 Aligned_cols=256 Identities=18% Similarity=0.189 Sum_probs=140.1
Q ss_pred hhHhHHHHHHHHHcCCCChhhHHHHHHHHhhhhc---------CCc---hhhhhHHHHHHHHHHhc-CcchhhhhHHHHH
Q 039448 722 FMRARLFDLALSLLPGLNAKEIDVLFVAIKPALQ---------DDE---GLIQKKAYKVLSTILRK-CDGFLSSRLEELL 788 (1276)
Q Consensus 722 ~~~~~llDL~~alv~~l~~~~~~~Lf~~~~~~l~---------~~d---~~~QKKAYk~L~~i~~~-~~~f~~~~~~el~ 788 (1276)
..-..+-+++..++.+++.+.-..+.+-+...+. ... ...|++..-++..++.. +..-......++.
T Consensus 112 ~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll 191 (415)
T PF12460_consen 112 RVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELL 191 (415)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCccCHHHHH
Confidence 3455677888889999998865554442222211 111 13566666666666653 2222222555555
Q ss_pred HHHHhhCC-CCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Q 039448 789 GLMIEVLP-SCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEE 867 (1276)
Q Consensus 789 ~~L~~~~~-~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~ 867 (1276)
+.++.... ......|...++|+..++...++.+ ...+++..+...+ ....+...|..+++++.-|+....--+
T Consensus 192 ~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~---~~~~~~~~~~~~~~~~~Wi~KaLv~R~ 265 (415)
T PF12460_consen 192 QSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSI---SSSEDSELRPQALEILIWITKALVMRG 265 (415)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhh---cccCCcchhHHHHHHHHHHHHHHHHcC
Confidence 55555433 3335666677777777775544433 2355666666655 566778899999999999988665433
Q ss_pred CCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhH--------HH--H----HhhhHHHHHhccCCHHH
Q 039448 868 NGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVS--------NV--Y----KLLPSTFLLLQRKNREI 933 (1276)
Q Consensus 868 ~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~--------~~--~----~ll~~v~llL~s~~REI 933 (1276)
.+...+-++.++.++. . +.+-..+--++..|+=++.+... -+ + ++++...-...+.+.+
T Consensus 266 ~~~~~~~~~~L~~lL~----~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~- 338 (415)
T PF12460_consen 266 HPLATELLDKLLELLS----S--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDE- 338 (415)
T ss_pred CchHHHHHHHHHHHhC----C--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChh-
Confidence 3333344445444332 2 33333334445544444322211 01 1 2233333333333333
Q ss_pred HHH-HHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhc
Q 039448 934 IKA-NLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKC 990 (1276)
Q Consensus 934 vKs-aLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKf 990 (1276)
+|. .|-=+--++..+|.+.+.+|+++++|=|+.-=+-.-...+.-.=.+|..+++.-
T Consensus 339 ~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~ 396 (415)
T PF12460_consen 339 IKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA 396 (415)
T ss_pred hHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence 222 222233346689999999999999887766544223345555556666666654
No 18
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.62 E-value=0.54 Score=53.80 Aligned_cols=237 Identities=14% Similarity=0.148 Sum_probs=136.4
Q ss_pred hccCCchhHHHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhccCCC
Q 039448 162 FMTDSRLKVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECLPLMS 241 (1276)
Q Consensus 162 f~~d~RPKVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~~~~ 241 (1276)
.-++.-|.+|.+|-+.+..||...++...--.....+.+|+..-+. .......++..|..|- -++.++
T Consensus 7 ~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~-----------D~~~~~~~l~gl~~L~-~~~~~~ 74 (262)
T PF14500_consen 7 YLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD-----------DHACVQPALKGLLALV-KMKNFS 74 (262)
T ss_pred hhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc-----------cHhhHHHHHHHHHHHH-hCcCCC
Confidence 3467889999999999999999876543222334555666655442 0001222344444433 236667
Q ss_pred chhHHHHHHHHHHhhcc--CchhHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHH
Q 039448 242 TKYTAVILKYFKTLLEL--RQPLVTRRVTDALNVICLHPTLEV---SAEALLDLLCSLALSVSTNETSADAMTFTARLLN 316 (1276)
Q Consensus 242 ~~~~~~i~~~ll~Ll~l--~n~~lt~~~~~~~~~lf~~~~~~l---~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~ 316 (1276)
......+.+.+..-... --+-.+..+|+.|..|+....+.+ ..+-+..++... ..+.|+.-.+.|. +++.
T Consensus 75 ~~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~----~gEkDPRnLl~~F-~l~~ 149 (262)
T PF14500_consen 75 PESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLI----DGEKDPRNLLLSF-KLLK 149 (262)
T ss_pred hhhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHh----ccCCCHHHHHHHH-HHHH
Confidence 77777777777664444 123345579999999987755333 334455555543 3345555555444 4444
Q ss_pred HHHHHHHhcCHhHHhhhhhHHHHHHHHHhc----CCchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCCCCh
Q 039448 317 VGMIKIYSINREICSTKLPIVFNALKDILA----SEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGP 392 (1276)
Q Consensus 317 ~a~~~l~~~~~~~c~~~LP~~f~~~~~~l~----S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~~~~ 392 (1276)
.-...+ + . ......+|.++.-|+- -+.-+-+.-+.+-|+.-+.+|+..+-.- .+
T Consensus 150 ~i~~~~---~--~-~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f----------------a~ 207 (262)
T PF14500_consen 150 VILQEF---D--I-SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF----------------AP 207 (262)
T ss_pred HHHHhc---c--c-chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh----------------HH
Confidence 222222 2 2 3556778888888773 2222334567889999999999532111 11
Q ss_pred HHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHhhcccch-hhHHHHHH
Q 039448 393 TVIEKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYSS-YFMRGALK 441 (1276)
Q Consensus 393 ~~i~~i~~~~~~~L~~~y~~aw~~vL~vl~~lf~~lg~~~~-~~l~~~L~ 441 (1276)
-.+.-++.. |+.-...+=..+|+.+.+.+++.|...- |++..+..
T Consensus 208 ~~~p~LleK----L~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~ 253 (262)
T PF14500_consen 208 FAFPLLLEK----LDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWN 253 (262)
T ss_pred HHHHHHHHH----HcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 222222222 2333344667899999999998886532 44444433
No 19
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.61 E-value=10 Score=48.30 Aligned_cols=177 Identities=16% Similarity=0.299 Sum_probs=124.0
Q ss_pred hhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHH-HHhhhccCCChhHHHHHHHHHHHHH
Q 039448 827 SYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFN-MVAGGLAGESPHMISAAVKGLARLA 905 (1276)
Q Consensus 827 ~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~-mV~aGLaG~tphMiSatI~ALsrLl 905 (1276)
..+++.+++++.--++....++|..|-+++-.++-.|..- .++.+..++. +++-.|++.-|.....-+-||-.++
T Consensus 794 kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc----~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~ 869 (1172)
T KOG0213|consen 794 KPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTC----GEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIV 869 (1172)
T ss_pred ccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhc----cHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999998877642 2455666664 6678899998887777777777665
Q ss_pred HHh--hhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHH----HHHHHHHHhhcchhhHHHHHHHH
Q 039448 906 YEF--SDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIH----LASMVEGLLKWQDDTKNQFKSKI 979 (1276)
Q Consensus 906 ~ef--~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~----L~~lv~~Ll~ws~d~k~hfR~KV 979 (1276)
--. ...-..+.++||.+.-.|.++.+.|+.+++.||-.....-|...=... -=++++.|-.|..+.|+.
T Consensus 870 nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRa----- 944 (1172)
T KOG0213|consen 870 NVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRA----- 944 (1172)
T ss_pred HhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 443 122224779999999999999999999999999888777664221111 134556665565544322
Q ss_pred HHHHHHHHHhcCHHHHHhcC-CHHHHHHHHHHHHHHHHHHhh
Q 039448 980 KLLLEMLVKKCGLDAVKAVM-PEEHMKLLKNIRKIKERKERK 1020 (1276)
Q Consensus 980 r~IlerLIRKfG~e~V~~~~-Pee~~KlL~nIrK~~~R~kRk 1020 (1276)
-+.-||| |...+ |.+-..-|-|=.|..+|..|=
T Consensus 945 ------a~nTfG~--IakaIGPqdVLatLlnnLkvqeRq~Rv 978 (1172)
T KOG0213|consen 945 ------AVNTFGY--IAKAIGPQDVLATLLNNLKVQERQNRV 978 (1172)
T ss_pred ------HHhhhhH--HHHhcCHHHHHHHHHhcchHHHHHhch
Confidence 2344665 55555 666555455556777877664
No 20
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.59 E-value=12 Score=49.10 Aligned_cols=178 Identities=20% Similarity=0.297 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHHHHHHhccCCCCCCcccHHH
Q 039448 803 KRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEA-----NKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQ 877 (1276)
Q Consensus 803 k~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~-----N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~e 877 (1276)
.-.-+.|+..++.. ... +...-+.+++..|....++. |-+...-|+-++-.++...... ++-++..|
T Consensus 389 ~~Aa~~~l~~~~~K---R~k--e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~---s~~~~~mE 460 (1010)
T KOG1991|consen 389 DTAALDFLTTLVSK---RGK--ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKK---SPYKSQME 460 (1010)
T ss_pred cHHHHHHHHHHHHh---cch--hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccC---CchHHHHH
Confidence 33345666666533 211 23455667777777766654 6778888988888888766542 33445556
Q ss_pred HH--HHHhhhccCCChhHHHHHHHHHHHHH-HHhhhhhHHHHHhhhHHHHHhc-cCCHHH-HHHHHHHHHHHHhhcC-h-
Q 039448 878 FF--NMVAGGLAGESPHMISAAVKGLARLA-YEFSDLVSNVYKLLPSTFLLLQ-RKNREI-IKANLGLLKVLVAKSH-A- 950 (1276)
Q Consensus 878 f~--~mV~aGLaG~tphMiSatI~ALsrLl-~ef~d~i~~~~~ll~~v~llL~-s~~REI-vKsaLgFvKV~v~~lp-~- 950 (1276)
+| +.|+.-|.+..-||.|=+-.-+++.- -+|+|... ..+.++.|...|. ++.+-| |.|||++ +.+|..-+ .
T Consensus 461 ~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~-l~~ale~t~~~l~~d~~lPV~VeAalAL-q~fI~~~~~~~ 538 (1010)
T KOG1991|consen 461 YFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNN-LSEALELTHNCLLNDNELPVRVEAALAL-QSFISNQEQAD 538 (1010)
T ss_pred HHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHH-HHHHHHHHHHHhccCCcCchhhHHHHHH-HHHHhcchhhh
Confidence 55 57888889999999998888888776 55655433 4455666665555 888777 7787774 55555554 2
Q ss_pred hHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCHH
Q 039448 951 EGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLD 993 (1276)
Q Consensus 951 ~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~e 993 (1276)
+-+.+|+|.+|..|++.+.+.-+- -+-..+|++|-+||-|
T Consensus 539 e~~~~hvp~~mq~lL~L~ne~End---~Lt~vme~iV~~fseE 578 (1010)
T KOG1991|consen 539 EKVSAHVPPIMQELLKLSNEVEND---DLTNVMEKIVCKFSEE 578 (1010)
T ss_pred hhHhhhhhHHHHHHHHHHHhcchh---HHHHHHHHHHHHHHHh
Confidence 459999999999999998876543 3677899999999755
No 21
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.36 E-value=7.9 Score=48.42 Aligned_cols=194 Identities=15% Similarity=0.185 Sum_probs=130.6
Q ss_pred HHHHHhhHhHHHHHHHhhcCCCccccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCC
Q 039448 635 NVLKSSARELLSILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDS 714 (1276)
Q Consensus 635 ~~L~~~A~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~ 714 (1276)
..|+.+..+++|+|--+...+.++.+....+|+..|.++.+..+++.+..+.+.-+.++.
T Consensus 287 ~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l~dp~-------------------- 346 (569)
T KOG1242|consen 287 KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDALADPS-------------------- 346 (569)
T ss_pred HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhcCcc--------------------
Confidence 367778899999999999999999998889999999999999999988866554432211
Q ss_pred CCCCCchhhHhHHHH-HHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhc--CcchhhhhHHHHHHHH
Q 039448 715 SNESSPDFMRARLFD-LALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRK--CDGFLSSRLEELLGLM 791 (1276)
Q Consensus 715 ~~~~~~~~~~~~llD-L~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~--~~~f~~~~~~el~~~L 791 (1276)
..+..++-. ...++|.|+++.++..+--++..-+...+..+-|++-.+.--+|.- ....+...+.+|..-|
T Consensus 347 ------~~~~e~~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~l 420 (569)
T KOG1242|consen 347 ------CYTPECLDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGL 420 (569)
T ss_pred ------cchHHHHHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHH
Confidence 012222222 4457899999999987777777777776777778999998888872 3445777777787777
Q ss_pred HhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHH
Q 039448 792 IEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALK-EANKRTRNRAYDVLVQIGRA 862 (1276)
Q Consensus 792 ~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~K-e~N~ktR~~A~~lLv~mg~~ 862 (1276)
-..+...-+..|.-=.+.|-.++..+-.. .| ...+||+-=..+ +-..+.|..+-+.|-+....
T Consensus 421 k~~~~d~~PEvR~vaarAL~~l~e~~g~~-------~f-~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~ 484 (569)
T KOG1242|consen 421 KENLDDAVPEVRAVAARALGALLERLGEV-------SF-DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAG 484 (569)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHhh-------cc-cccccHHHHhhccchhhhhhHHHhhhHHHHHhc
Confidence 77777664555665666676666543221 22 333343332221 22345566665555555443
No 22
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.32 E-value=0.48 Score=52.34 Aligned_cols=183 Identities=20% Similarity=0.215 Sum_probs=109.6
Q ss_pred ccchHHHHHHHHHHHHhccCC---ChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHH
Q 039448 800 FSAKRHRLDCLYFIIAHVSKD---DSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLY 876 (1276)
Q Consensus 800 ~~ak~~RL~cL~~lv~~l~~~---~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ 876 (1276)
...+..|...|..|-..+... .........+..++.-++.+.++.|...-..|..+|..|+..+... +.
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~--------~~ 89 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSH--------FE 89 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGG--------GH
T ss_pred ccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHh--------HH
Confidence 445777777665554322211 1111223445556677888889999999999999999999988653 55
Q ss_pred HHHHHHhhhc---cCCC-hhHHHHHHHHHHHHHHHhhhhhHHHHHh-hhHHHHHhccCCHHHHHHHHHHHHHHHhhcC--
Q 039448 877 QFFNMVAGGL---AGES-PHMISAAVKGLARLAYEFSDLVSNVYKL-LPSTFLLLQRKNREIIKANLGLLKVLVAKSH-- 949 (1276)
Q Consensus 877 ef~~mV~aGL---aG~t-phMiSatI~ALsrLl~ef~d~i~~~~~l-l~~v~llL~s~~REIvKsaLgFvKV~v~~lp-- 949 (1276)
.|+.++...| .|.+ .-+..++..+|.-++-... ....+ +..+...+.++|..+...++.|+..++...+
T Consensus 90 ~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~----~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~ 165 (228)
T PF12348_consen 90 PYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS----YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSD 165 (228)
T ss_dssp HHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC----cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccch
Confidence 5555555443 3443 4455555556665543322 11233 4444567899999999999999999999999
Q ss_pred hhHHHHH--HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCHHH
Q 039448 950 AEGLQIH--LASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDA 994 (1276)
Q Consensus 950 ~~~l~~~--L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~e~ 994 (1276)
...+..+ ++.+++.|...-.|-...-|..-|..|..|.+-||..+
T Consensus 166 ~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 166 SSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp -GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhh
Confidence 5555554 47888888888888888889999999999988887765
No 23
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=94.42 E-value=1.3 Score=54.17 Aligned_cols=243 Identities=16% Similarity=0.164 Sum_probs=133.3
Q ss_pred HHHHhhHhHHHHHHHhhcCCCccccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCC
Q 039448 636 VLKSSARELLSILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSS 715 (1276)
Q Consensus 636 ~L~~~A~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1276)
.++-++..+|.-||+++.........++..||---+.+..... ..+...++++|........+
T Consensus 19 di~p~~~~ll~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~-~p~~~~il~~L~~il~~v~k---------------- 81 (435)
T PF03378_consen 19 DIQPFAQQLLQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDI-LPIAVEILQHLTAILKEVSK---------------- 81 (435)
T ss_dssp GTTCCHHHHHHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTT-GGGHHHHHHHHHHHHHHHHT----------------
T ss_pred HhhhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHh----------------
Confidence 3556788999999999987655555677777665555544433 34455555665555433221
Q ss_pred CCCCchhhHhHHHHHHHHHcCCCChhh-------HHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCc-chhhhhHHHH
Q 039448 716 NESSPDFMRARLFDLALSLLPGLNAKE-------IDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCD-GFLSSRLEEL 787 (1276)
Q Consensus 716 ~~~~~~~~~~~llDL~~alv~~l~~~~-------~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~-~f~~~~~~el 787 (1276)
| ++.+...|.+++-+.+++.+..... -+.||-.+..+|+.+-.-..==.+-+|.-+++.+. +-+.+....|
T Consensus 82 N-PsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L 160 (435)
T PF03378_consen 82 N-PSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQL 160 (435)
T ss_dssp S----HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGG
T ss_pred C-CCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence 1 1334578999999999998866432 23444455555655445555667889999999765 3344444445
Q ss_pred HHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC
Q 039448 788 LGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEE 867 (1276)
Q Consensus 788 ~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~ 867 (1276)
...|+...-=-..+--..=.++|..++.+-+..-...++.+-|--+.. -.++.| ..-.-||+||..|-..+-
T Consensus 161 ~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQ-kLi~sk----~~D~~gF~LL~~iv~~~p--- 232 (435)
T PF03378_consen 161 FPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQ-KLIASK----ANDHYGFDLLESIVENLP--- 232 (435)
T ss_dssp HHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHH-HHHT-T----TCHHHHHHHHHHHHHHS----
T ss_pred HHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHH-HHHCCC----CcchHHHHHHHHHHHHCC---
Confidence 555553322112223334445666666554332111011111111111 223333 345779999999988773
Q ss_pred CCCCcccHHHHH----HHHhhhcc-CCChhHHHHHHHHHHHHHHHh
Q 039448 868 NGGGKENLYQFF----NMVAGGLA-GESPHMISAAVKGLARLAYEF 908 (1276)
Q Consensus 868 ~~~~~~~l~ef~----~mV~aGLa-G~tphMiSatI~ALsrLl~ef 908 (1276)
.+.++.|+ +++..=|. +.|+-.+..-|.-++.+...+
T Consensus 233 ----~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~ 274 (435)
T PF03378_consen 233 ----PEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKY 274 (435)
T ss_dssp ----HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHc
Confidence 23444554 44444454 667778888888888887777
No 24
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.23 E-value=7.2 Score=45.81 Aligned_cols=175 Identities=20% Similarity=0.254 Sum_probs=96.6
Q ss_pred CCchhhhhHHHHHHHHHHhcC--cchhhhhHHHHHHHHHhhCCCCCccchHHHHH--HHHHHHHhcc-CCChHHHHhhhH
Q 039448 756 DDEGLIQKKAYKVLSTILRKC--DGFLSSRLEELLGLMIEVLPSCHFSAKRHRLD--CLYFIIAHVS-KDDSEQRRSYIL 830 (1276)
Q Consensus 756 ~~d~~~QKKAYk~L~~i~~~~--~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~--cL~~lv~~l~-~~~~~~~~~~~i 830 (1276)
++....--.|++.|..++.++ ..|+..+...|...+...+..-.+ +-.+|+ ++..+...+- ..+. .++.
T Consensus 54 eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~--~E~~lA~~~l~Ll~ltlg~g~~~----~ei~ 127 (309)
T PF05004_consen 54 EKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKS--EEQALAARALALLALTLGAGEDS----EEIF 127 (309)
T ss_pred hcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHhhhcCCCccH----HHHH
Confidence 334444457888888888743 468888889999988888775443 222222 2333322322 1222 2333
Q ss_pred HHHHHHH--HHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc---ccHHHHHHHHhhhccCC--------ChhHHHHH
Q 039448 831 SSFLTEI--ILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGK---ENLYQFFNMVAGGLAGE--------SPHMISAA 897 (1276)
Q Consensus 831 ~~~lpEi--IL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~---~~l~ef~~mV~aGLaG~--------tphMiSat 897 (1276)
..+.|-. |+.-...+.+.|..+...|-.++-.... +.++.. +.++..|.++..-..|. ++..++|+
T Consensus 128 ~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~-d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aA 206 (309)
T PF05004_consen 128 EELKPVLKRILTDSSASPKARAACLEALAICTFVGGS-DEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAA 206 (309)
T ss_pred HHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcC-ChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHH
Confidence 3333322 2223355678888877666554433222 111111 23333333333222232 35689999
Q ss_pred HHHHHHHHHHhhh--hhHHHHHhhhHHHHHhccCCHHHHHHH
Q 039448 898 VKGLARLAYEFSD--LVSNVYKLLPSTFLLLQRKNREIIKAN 937 (1276)
Q Consensus 898 I~ALsrLl~ef~d--~i~~~~~ll~~v~llL~s~~REIvKsa 937 (1276)
+.|-+-|+-.-.+ +...+...++...-+|.+.+++|-.||
T Consensus 207 L~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAA 248 (309)
T PF05004_consen 207 LSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAA 248 (309)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999888833322 122234456666679999999998886
No 25
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=93.82 E-value=30 Score=45.43 Aligned_cols=352 Identities=14% Similarity=0.097 Sum_probs=179.5
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHH
Q 039448 155 LYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALK 234 (1276)
Q Consensus 155 ~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk 234 (1276)
....++-=.-.+|-=|||+|--|+..+...-+ ......+.+.+. .+-++. .....-.+-|.+|+.+-
T Consensus 175 il~~l~~ql~s~R~aVrKkai~~l~~la~~~~---------~~ly~~li~~Ll-~~L~~~---~q~~~~rt~Iq~l~~i~ 241 (1233)
T KOG1824|consen 175 ILKCLLPQLQSPRLAVRKKAITALGHLASSCN---------RDLYVELIEHLL-KGLSNR---TQMSATRTYIQCLAAIC 241 (1233)
T ss_pred HHHHHhhcccChHHHHHHHHHHHHHHHHHhcC---------HHHHHHHHHHHH-hccCCC---CchHHHHHHHHHHHHHH
Confidence 44445544556899999999999988775321 111122222221 111110 01112234445554443
Q ss_pred hhccCCCchhHHHHHHHHHHhh---ccCchhHHHHHHHHHHHHhcCCCCCCCH---HHHHHHHHHhcccCCCCCC----c
Q 039448 235 ECLPLMSTKYTAVILKYFKTLL---ELRQPLVTRRVTDALNVICLHPTLEVSA---EALLDLLCSLALSVSTNET----S 304 (1276)
Q Consensus 235 ~~l~~~~~~~~~~i~~~ll~Ll---~l~n~~lt~~~~~~~~~lf~~~~~~l~~---~~~~~li~aL~~~~~~~~~----~ 304 (1276)
.-...=-..+...+.+.+.... +..+-=|+..|+|+|+.+..-.+.++.+ +.....+..+ .|-|..+. +
T Consensus 242 r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yi-sYDPNy~yd~~eD 320 (1233)
T KOG1824|consen 242 RQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYI-SYDPNYNYDTEED 320 (1233)
T ss_pred HHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHh-ccCCCCCCCCccc
Confidence 3332222334445555555555 5567789999999999998766655443 3333333333 33332111 0
Q ss_pred --------------------hhhHHHHHHHHHHHHHHHHhcCHhHHhhhhhHHHHHHHHH----hcCCchhHHHHHHHHH
Q 039448 305 --------------------ADAMTFTARLLNVGMIKIYSINREICSTKLPIVFNALKDI----LASEHEEAIFAATEAL 360 (1276)
Q Consensus 305 --------------------~~~l~~~~~vl~~a~~~l~~~~~~~c~~~LP~~f~~~~~~----l~S~~~~v~~~as~~L 360 (1276)
.+-+.|-+| ..|-.++..+=. .-..-||.+...+..- |---.++|..-.-+++
T Consensus 321 ed~~~~ed~eDde~~deYsDDeD~SWkVR--RaAaKcl~a~Is-SR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~y 397 (1233)
T KOG1824|consen 321 EDAMFLEDEEDDEQDDEYSDDEDMSWKVR--RAAAKCLEAVIS-SRLEMLPDFYQTLGPALISRFKEREENVKADVFHAY 397 (1233)
T ss_pred hhhhhhhccccchhccccccccchhHHHH--HHHHHHHHHHHh-ccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHH
Confidence 122566543 445455444310 1124577777765443 3334566888888888
Q ss_pred HHHHHHhhchhHHhhhcccccccCCCcCCCCh----HHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHhhcccchh--
Q 039448 361 KNLINACIDESLIKQGVDQITNVNSDARKSGP----TVIEKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYSSY-- 434 (1276)
Q Consensus 361 ~~li~~ci~~~~~~~~v~~~~~~~~~~~~~~~----~~i~~i~~~~~~~L~~~y~~aw~~vL~vl~~lf~~lg~~~~~-- 434 (1276)
+.++.+-=...-....-+.+ +.++..++- ..+-.|++.+..-|.-+-.-.-.-.|.++..+...+...-.+
T Consensus 398 i~ll~qt~~~~~~~~d~d~~---e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~ 474 (1233)
T KOG1824|consen 398 IALLKQTRPVIEVLADNDAM---EQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHI 474 (1233)
T ss_pred HHHHHcCCCCcccccCchhh---hccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcc
Confidence 88887632211011000000 001112121 233456666666665444445567777777777776654333
Q ss_pred --hHHHHHHHHHhhhcCCCCCCcchhHHHHHHHHHHHhcChhhHhhcccCccccCcccccccchhhhhhhccCCCChHhH
Q 039448 435 --FMRGALKNLADMQNLPDEDFPYRKQLHECVGSAVGSMGPETFLCLLPLKLEASDLSEVNVWLFPILKQYIIGARLNFF 512 (1276)
Q Consensus 435 --~l~~~L~~l~~lr~~~~~~f~~~~~ld~~iGaAi~amGPe~vL~~lPLnl~~~~~~~~RaWLLPlLr~~i~~t~L~fF 512 (1276)
+...++-.+.|--. .-..+.+.=-++-.|+..-||++|=..+|. |.|++--.|
T Consensus 475 ~slvpgI~~~l~DkSs----ss~~ki~~L~fl~~~L~s~~p~~fhp~~~~-------------Ls~~v~~aV-------- 529 (1233)
T KOG1824|consen 475 PSLVPGIIYSLNDKSS----SSNLKIDALVFLYSALISHPPEVFHPHLSA-------------LSPPVVAAV-------- 529 (1233)
T ss_pred cccchhhhhhcCCccc----hHHHHHHHHHHHHHHHhcCChhhcccchhh-------------hhhHHHHHh--------
Confidence 33444444433111 123344555677889999999998766655 234433322
Q ss_pred HHHHHHHHHHHHHHhHHhhhhccchhhhhHHHHHHHHHhhhhCC-CCCCcchhhh
Q 039448 513 MEKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLPSF-CNYPVDTAES 566 (1276)
Q Consensus 513 ~~~~lPLa~~~~~k~~~~~~~~~~~~ak~~~tL~~QlWsLLPgF-C~~P~D~~~s 566 (1276)
...+++.+.+.- .+++.++.-||-+=|+- |+.+.++.+-
T Consensus 530 -------~d~fyKisaEAL--------~v~~~lvkvirpl~~~~~~d~~~~v~~m 569 (1233)
T KOG1824|consen 530 -------GDPFYKISAEAL--------LVCQQLVKVIRPLQPPSSFDASPYVKTM 569 (1233)
T ss_pred -------cCchHhhhHHHH--------HHHHHHHHHhcccCCCccCCCChhHHHH
Confidence 223344433321 25677888899888743 4444444433
No 26
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=93.81 E-value=3.5 Score=53.31 Aligned_cols=256 Identities=16% Similarity=0.135 Sum_probs=145.8
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHH
Q 039448 155 LYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALK 234 (1276)
Q Consensus 155 ~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk 234 (1276)
....+-.++.|..|=||=+|-.+.+...+. ..+.|--+++-+-+.+. +.+++ .....-+.-+|..+-
T Consensus 492 l~~~v~~l~~~~~~~~ki~a~~~~~~~~~~----~vl~~~~p~ild~L~ql---as~~s------~evl~llmE~Ls~vv 558 (1005)
T KOG2274|consen 492 LNATVNALTMDVPPPVKISAVRAFCGYCKV----KVLLSLQPMILDGLLQL---ASKSS------DEVLVLLMEALSSVV 558 (1005)
T ss_pred HHHHHHhhccCCCCchhHHHHHHHHhccCc----eeccccchHHHHHHHHH---ccccc------HHHHHHHHHHHHHHh
Confidence 334444667788888999998888877631 12333334443333332 22221 112234455566666
Q ss_pred hhccCCCchhHHHHHHHHHHhhcc--CchhHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHhcccCCCCCCchhhHHH
Q 039448 235 ECLPLMSTKYTAVILKYFKTLLEL--RQPLVTRRVTDALNVICLHPT--LEVSAEALLDLLCSLALSVSTNETSADAMTF 310 (1276)
Q Consensus 235 ~~l~~~~~~~~~~i~~~ll~Ll~l--~n~~lt~~~~~~~~~lf~~~~--~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~ 310 (1276)
.+=|.|+...-++||+....+... .+|+++.-+-++|+.|..... ..+-.-.+..+|.-|-. |.........+.
T Consensus 559 ~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~--~~~~~~~~l~~~ 636 (1005)
T KOG2274|consen 559 KLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQL--NADKAPAGLCAI 636 (1005)
T ss_pred ccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcC--cccccCchhhHH
Confidence 666888888888999998887776 789999999999999986443 22333335555555422 221111111111
Q ss_pred HHHHHHHHHHHHHhcCHhHHhhhhhHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCC
Q 039448 311 TARLLNVGMIKIYSINREICSTKLPIVFNALKDIL-ASEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARK 389 (1276)
Q Consensus 311 ~~~vl~~a~~~l~~~~~~~c~~~LP~~f~~~~~~l-~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~ 389 (1276)
.+.+|. ..+-..-|.+--.-+--+|..+..+. -|+..+..+.+.+||+++|.. +.+-+.+- +. .
T Consensus 637 aidvLt---tvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~--~~eq~~t~------~~----e 701 (1005)
T KOG2274|consen 637 AIDVLT---TVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV--TLEQLLTW------HD----E 701 (1005)
T ss_pred HHHHHH---HHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc--CHHHHHhh------cc----C
Confidence 112211 01111122233333444566666655 478888889999999999864 33323221 10 1
Q ss_pred CChHHHHHHHHHHHhhhhcchhh-hHHHHHHHHHHHHHhhcccchhhHHHHHH
Q 039448 390 SGPTVIEKICATVESLLDYHYSA-VWDMAFQIVSTMFDKLGTYSSYFMRGALK 441 (1276)
Q Consensus 390 ~~~~~i~~i~~~~~~~L~~~y~~-aw~~vL~vl~~lf~~lg~~~~~~l~~~L~ 441 (1276)
.+.. ++-|...++-+|+.+-.. +--.|-+++.++|.+.|.--.|-+..+|+
T Consensus 702 ~g~~-~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d~IL~ 753 (1005)
T KOG2274|consen 702 PGHN-LWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLDQILR 753 (1005)
T ss_pred CCcc-HHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHHHHHH
Confidence 1223 455556666778776554 33388888888888888776665544443
No 27
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.49 E-value=29 Score=44.07 Aligned_cols=169 Identities=15% Similarity=0.113 Sum_probs=91.4
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCH
Q 039448 248 ILKYFKTLLELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINR 327 (1276)
Q Consensus 248 i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~ 327 (1276)
+-..|+.=+.-.+++++..+=-++..+++.-.-+--++.+.++.+-| + .|+.+---..+-.+.++++..-..| |.
T Consensus 91 iKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L-~-s~d~n~~EgA~~AL~KIcEDsa~~l---ds 165 (885)
T KOG2023|consen 91 IKSECLHGLGDASPLIRATVGIVITTIASTGGLQHWPELLPQLCELL-D-SPDYNTCEGAFGALQKICEDSAQFL---DS 165 (885)
T ss_pred HHHHHHhhccCchHHHHhhhhheeeeeecccccccchhHHHHHHHHh-c-CCcccccchhHHHHHHHHhhhHHHH---hh
Confidence 33444444444566555544444566665544444466666666555 2 2443333334555555554332222 22
Q ss_pred hHH----hhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHH---HhhchhHH--hhhcccccccCCCcCCCChHHHHHH
Q 039448 328 EIC----STKLPIVFNALKDILASEHEEAIFAATEALKNLIN---ACIDESLI--KQGVDQITNVNSDARKSGPTVIEKI 398 (1276)
Q Consensus 328 ~~c----~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~---~ci~~~~~--~~~v~~~~~~~~~~~~~~~~~i~~i 398 (1276)
+.- .--+|++ ..|+.++++.||+-|..|+..+|- +.+.-++- .+.+-++.| -.+|.+=..+
T Consensus 166 ~~~~rpl~~mipkf----l~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalan------D~~~eVRk~v 235 (885)
T KOG2023|consen 166 DVLTRPLNIMIPKF----LQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALAN------DEDPEVRKNV 235 (885)
T ss_pred hcccCchHHhHHHH----HHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHcc------CCCHHHHHHH
Confidence 111 1124554 458899999999999988865431 11111100 111222211 1235666679
Q ss_pred HHHHHhhhhcchhhhHHHHHHHHHHHHHhhccc
Q 039448 399 CATVESLLDYHYSAVWDMAFQIVSTMFDKLGTY 431 (1276)
Q Consensus 399 ~~~~~~~L~~~y~~aw~~vL~vl~~lf~~lg~~ 431 (1276)
|.++.-+|.+|-..--+|.=+|+.-|..+....
T Consensus 236 C~alv~Llevr~dkl~phl~~IveyML~~tqd~ 268 (885)
T KOG2023|consen 236 CRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV 268 (885)
T ss_pred HHHHHHHHHhcHHhcccchHHHHHHHHHHccCc
Confidence 999888899888777777777777777665543
No 28
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.19 E-value=13 Score=47.78 Aligned_cols=150 Identities=18% Similarity=0.158 Sum_probs=92.0
Q ss_pred HHHHHHhhccCCchh-HHHHHHHHHHHHHhccCCCC-CccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHH
Q 039448 155 LYGVVLAFMTDSRLK-VRRQSHLCVREILLSLQGTL-VLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDA 232 (1276)
Q Consensus 155 ~~~~LL~f~~d~RPK-VRK~Aq~av~~IL~~~~~~p-~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~l 232 (1276)
+|.+.++|..|.--+ ||=.+..+++.++..+..++ ..||.-+.+...|-+.+..++ +.-+=+|+|++
T Consensus 527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~-----------e~Dtk~~VL~~ 595 (978)
T KOG1993|consen 527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVE-----------ECDTKTSVLNL 595 (978)
T ss_pred HHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHh-----------hhhhHHHHHHH
Confidence 999999999998444 67799999999999877777 889998888887777665322 22344666666
Q ss_pred HHhhccCCCch---hHHHHHHHHHHhhcc--CchhHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHhcccCCCCC--C
Q 039448 233 LKECLPLMSTK---YTAVILKYFKTLLEL--RQPLVTRRVTDALNVICLHPT--LEVSAEALLDLLCSLALSVSTNE--T 303 (1276)
Q Consensus 233 Lk~~l~~~~~~---~~~~i~~~ll~Ll~l--~n~~lt~~~~~~~~~lf~~~~--~~l~~~~~~~li~aL~~~~~~~~--~ 303 (1276)
|.+++--.+.- ...++..++=.|-+- .++++.-+.+-+++.|-.+-. +..--+-+.-+|.-=.+..++.+ .
T Consensus 596 ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~D~~sP~hv~L 675 (978)
T KOG1993|consen 596 LSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELSTDPSSPEHVYL 675 (978)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhcCCCCCceeeh
Confidence 66666442221 122222222222222 689999999999999876543 22333445555554333222222 1
Q ss_pred chhhHHHHHHHH
Q 039448 304 SADAMTFTARLL 315 (1276)
Q Consensus 304 ~~~~l~~~~~vl 315 (1276)
..|.+.-|..++
T Consensus 676 ~EDgmeLW~~~L 687 (978)
T KOG1993|consen 676 LEDGMELWLTTL 687 (978)
T ss_pred hhhHHHHHHHHH
Confidence 345554443443
No 29
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=91.93 E-value=53 Score=43.23 Aligned_cols=89 Identities=13% Similarity=0.146 Sum_probs=60.6
Q ss_pred CchhHHHHHHHhhhhccCcChHHHhhhhhh-----HHHHHHHHhhhcCCCchhHHHHHHHHHHHHhccCCCCCcch----
Q 039448 82 SSHIIGSLSTILSLLLPKISVAVLKKKGDF-----LTDLVVRVVRLSSVTAGAVASGLTSLSRLLTGRGRVNWSDV---- 152 (1276)
Q Consensus 82 ~~~~~~a~lyLL~lv~p~vP~~vLr~kf~~-----~~~~l~~~l~~~~~~~~~lRs~i~CL~~LL~aqd~~~W~~~---- 152 (1276)
+++.+...-.-+.+++.++++.++...+.. +..++..-|.... .+.+..+|.||..||..-...=|+..
T Consensus 180 ~~~~~~~fW~g~~~Il~~ld~~~i~~~l~~~~~~~i~~L~~~hL~~~~--~~~l~~lL~~l~~lL~k~~~~FW~~~~~~~ 257 (727)
T PF12726_consen 180 NPDSVIRFWSGFSLILRLLDKEQITHSLRALELDPIYRLLLNHLSSNL--SPPLPILLRCLSILLEKLGSDFWDAMGPIS 257 (727)
T ss_pred ChhHHHHHHHHHHHHHHHccHHHHHHHHhccccchHHHHHHHHhhccc--chhHHHHHHHHHHHHHhCHHHHhcccCCCC
Confidence 345555555567777788888888777765 3444444444332 77889999999999999999999842
Q ss_pred ----------hhHHHHHHhhccCCchhHHH
Q 039448 153 ----------SQLYGVVLAFMTDSRLKVRR 172 (1276)
Q Consensus 153 ----------~~~~~~LL~f~~d~RPKVRK 172 (1276)
+|.|..+|.-+.+.-+-+.-
T Consensus 258 p~~ild~If~np~f~~~L~~~~~~~~~~~~ 287 (727)
T PF12726_consen 258 PQVILDQIFDNPAFKKLLLQSQEDEISESD 287 (727)
T ss_pred HHHHHHHHhCChHHHHHHHhhccCCccccc
Confidence 24677777666665554443
No 30
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.80 E-value=22 Score=44.32 Aligned_cols=292 Identities=16% Similarity=0.216 Sum_probs=154.9
Q ss_pred hHHHHHH-HhhcCCCccccccHHHHHHHhhccCCHHHH---HHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCC
Q 039448 643 ELLSILS-RIFLESAKDEGGCLQSTIGDFASIADKEIV---TRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNES 718 (1276)
Q Consensus 643 n~L~vLf-Nvy~~~~~~~~~~~~~tI~ay~sI~~~~~l---~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1276)
.|+|+|= -+|.. .+..|.++.+-|...-++.|-+++ ..+|+..++.|.+...+
T Consensus 167 ~~ipLL~eriy~~-n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~e---------------------- 223 (675)
T KOG0212|consen 167 EFIPLLRERIYVI-NPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDE---------------------- 223 (675)
T ss_pred HHHHHHHHHHhcC-CchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHH----------------------
Confidence 5778775 45555 577888888888888888877764 23444444443222111
Q ss_pred CchhhHhHHHHHHHHHcCCCChh-hHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCC
Q 039448 719 SPDFMRARLFDLALSLLPGLNAK-EIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPS 797 (1276)
Q Consensus 719 ~~~~~~~~llDL~~alv~~l~~~-~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~ 797 (1276)
--....+.|+=+.+=+..=|.. .+...-++..+-++++++.+|-+|..-|.+...-.+.-+.-++..|...++..++.
T Consensus 224 -Vr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~ 302 (675)
T KOG0212|consen 224 -VRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSD 302 (675)
T ss_pred -HHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCC
Confidence 0012334444333333333333 34444556677788899999999999999988743333333444454444444433
Q ss_pred CCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHH
Q 039448 798 CHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIIL-ALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLY 876 (1276)
Q Consensus 798 ~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL-~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ 876 (1276)
....+.+.-=.-+..++..+..... ...++=-.-+-||.. -.++.++.||-++.+-+..+-+++.++
T Consensus 303 ~e~~~i~~~a~~~n~~l~~l~s~~~--~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~q---------- 370 (675)
T KOG0212|consen 303 TEEMSIKEYAQMVNGLLLKLVSSER--LKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQ---------- 370 (675)
T ss_pred CccccHHHHHHHHHHHHHHHHhhhh--hccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcch----------
Confidence 3332111111111101111111000 000111111112221 124555555555555555555544321
Q ss_pred HHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHH
Q 039448 877 QFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIH 956 (1276)
Q Consensus 877 ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~ 956 (1276)
+.-...+++++.+.-|..++-|||--+|..+--.+.+-....+.++
T Consensus 371 ----------------------------------l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~~~f 416 (675)
T KOG0212|consen 371 ----------------------------------LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNLRKF 416 (675)
T ss_pred ----------------------------------hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccHHHH
Confidence 1112346666767778888888888888777666665555444444
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCHHHHHhcC-----CHHHHHHHH
Q 039448 957 LASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDAVKAVM-----PEEHMKLLK 1008 (1276)
Q Consensus 957 L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~e~V~~~~-----Pee~~KlL~ 1008 (1276)
+..+ +.+-.+.+--.+..--.|+.+|+-....|.|...+ -|+++++-.
T Consensus 417 l~sL----L~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~e~nl~FAs 469 (675)
T KOG0212|consen 417 LLSL----LEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILEREENLKFAS 469 (675)
T ss_pred HHHH----HHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhccccchHHH
Confidence 4444 44444444455555667889999999999988765 345666533
No 31
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.82 E-value=58 Score=41.56 Aligned_cols=641 Identities=14% Similarity=0.206 Sum_probs=316.0
Q ss_pred CchhHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCCC--CCCCHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHH
Q 039448 241 STKYTAVILKYFKTLLELRQPLVTRRVTDALNVICLHPT--LEVSAEALLDLLCSLALSVSTNETSADAMTFTARLLNVG 318 (1276)
Q Consensus 241 ~~~~~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~--~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a 318 (1276)
+..|..-+.+-++.+....+|-+++.++.|...+--.++ -.+..++..+.+++|.. +.. +.+- +-+=+|
T Consensus 168 ~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalan---D~~---~eVR---k~vC~a 238 (885)
T KOG2023|consen 168 LTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALAN---DED---PEVR---KNVCRA 238 (885)
T ss_pred ccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHcc---CCC---HHHH---HHHHHH
Confidence 367778888889999999999999999999988765444 33556889999999852 222 2221 223347
Q ss_pred HHHHHhcCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhhhcccc------------------
Q 039448 319 MIKIYSINREICSTKLPIVFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQGVDQI------------------ 380 (1276)
Q Consensus 319 ~~~l~~~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~------------------ 380 (1276)
+..|-.+-|+.-+.||+.++.-+...-.-..++|.-.|.+-.-++-.+-|.++++..-+.++
T Consensus 239 lv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL 318 (885)
T KOG2023|consen 239 LVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILL 318 (885)
T ss_pred HHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHh
Confidence 78888888999999999998877666666677788888888777766666655443111000
Q ss_pred cccCCCcCCCC-hHHHH-HHHHHH-Hhh--------------------hhcchhhhHHHHHHHHHHHHHhhcccchhhHH
Q 039448 381 TNVNSDARKSG-PTVIE-KICATV-ESL--------------------LDYHYSAVWDMAFQIVSTMFDKLGTYSSYFMR 437 (1276)
Q Consensus 381 ~~~~~~~~~~~-~~~i~-~i~~~~-~~~--------------------L~~~y~~aw~~vL~vl~~lf~~lg~~~~~~l~ 437 (1276)
.|...+....+ ++-|. +..+.= +.. -+-.-..+..-.|.|++.. +|...-|.+.
T Consensus 319 ~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanv---f~~elL~~l~ 395 (885)
T KOG2023|consen 319 KNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANV---FGDELLPILL 395 (885)
T ss_pred cCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHh---hHHHHHHHHH
Confidence 00000000000 00000 000000 000 0011122233455555554 4555556666
Q ss_pred HHHHH-HHhhhcCCCCCCcchhHHHHHHHHHHHhcChhhHhhccc----Ccc--ccCccccc---ccchhhhhhhccCCC
Q 039448 438 GALKN-LADMQNLPDEDFPYRKQLHECVGSAVGSMGPETFLCLLP----LKL--EASDLSEV---NVWLFPILKQYIIGA 507 (1276)
Q Consensus 438 ~~L~~-l~~lr~~~~~~f~~~~~ld~~iGaAi~amGPe~vL~~lP----Lnl--~~~~~~~~---RaWLLPlLr~~i~~t 507 (1276)
|+|+. |. .+..--|+.--.++||.-+. +..-|...|| .-+ -.+.-..- --|=|-=...++...
T Consensus 396 PlLk~~L~------~~~W~vrEagvLAlGAIAEG-cM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~ 468 (885)
T KOG2023|consen 396 PLLKEHLS------SEEWKVREAGVLALGAIAEG-CMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQD 468 (885)
T ss_pred HHHHHHcC------cchhhhhhhhHHHHHHHHHH-HhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcC
Confidence 66642 22 23333444445566643222 2233333332 211 01111111 235554444445444
Q ss_pred C-hHhHHHHHHHHHHHHHHHhHHhhhhccchhhhhHHHHHHHHHhhhhCCCCCCcchhhhHHHHHHHHHHHhc--cCccc
Q 039448 508 R-LNFFMEKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLPSFCNYPVDTAESFMDLAGVLCSALH--EENDI 584 (1276)
Q Consensus 508 ~-L~fF~~~~lPLa~~~~~k~~~~~~~~~~~~ak~~~tL~~QlWsLLPgFC~~P~D~~~sF~~lA~~L~~~L~--~~~~L 584 (1276)
+ =.||+..+-||.+++-..-.+..+++ .--|-|+.++-=.- +......+-.+|.-++. .+..|
T Consensus 469 ~~~~~f~pvL~~ll~~llD~NK~VQEAA----csAfAtleE~A~~e----------LVp~l~~IL~~l~~af~kYQ~KNL 534 (885)
T KOG2023|consen 469 SRDEYFKPVLEGLLRRLLDSNKKVQEAA----CSAFATLEEEAGEE----------LVPYLEYILDQLVFAFGKYQKKNL 534 (885)
T ss_pred ChHhhhHHHHHHHHHHHhcccHHHHHHH----HHHHHHHHHhccch----------hHHHHHHHHHHHHHHHHHHhhcce
Confidence 3 25566555555555532211111110 11244444432111 11111223333333332 23343
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHHHHHHHhhcCCCcccc--cc
Q 039448 585 RGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLSILSRIFLESAKDEG--GC 662 (1276)
Q Consensus 585 R~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~vLfNvy~~~~~~~~--~~ 662 (1276)
+ ++..|+.+|.++-....+ . ..|-+-++|-|.--...-+.++. -.
T Consensus 535 l-ILYDAIgtlAdsvg~~Ln---~-----------------------------~~YiqiLmPPLi~KW~~lsd~DKdLfP 581 (885)
T KOG2023|consen 535 L-ILYDAIGTLADSVGHALN---K-----------------------------PAYIQILMPPLIEKWELLSDSDKDLFP 581 (885)
T ss_pred e-hHHHHHHHHHHHHHHhcC---c-----------------------------HHHHHHhccHHHHHHHhcCcccchHHH
Confidence 2 566777777666311110 0 01233556666655544432221 12
Q ss_pred HHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHhHHHHHHHHHcCCCC
Q 039448 663 LQSTIGDFASIAD---KEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLN 739 (1276)
Q Consensus 663 ~~~tI~ay~sI~~---~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv~~l~ 739 (1276)
+++|+.+.++-.. -......|.+++.-+....+.....+. ++.... +......+-|||+..++.++.
T Consensus 582 LLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~---~~~~~~-------pdkdfiI~sLDL~SGLaegLg 651 (885)
T KOG2023|consen 582 LLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQ---DPTVEA-------PDKDFIIVSLDLLSGLAEGLG 651 (885)
T ss_pred HHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccC---CccccC-------CCcceEEEeHHHHhHHHHHhh
Confidence 3455444332111 112345666666555433332221111 111111 222234556999999999987
Q ss_pred hhhHHHH-----HHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHH
Q 039448 740 AKEIDVL-----FVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFII 814 (1276)
Q Consensus 740 ~~~~~~L-----f~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv 814 (1276)
.-.=..+ .+++...+++.-+-+---||-+|--++..|.+.+..++++....|-..++.-..|+--.-.-.|-.+-
T Consensus 652 ~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia 731 (885)
T KOG2023|consen 652 SHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAIWAIGEIA 731 (885)
T ss_pred hchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHHHHHHHHH
Confidence 6432222 23444556777788888999999999999877788888888888776666444443222222222221
Q ss_pred HhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHH
Q 039448 815 AHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMI 894 (1276)
Q Consensus 815 ~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMi 894 (1276)
..+-. +...++..+|--.|.-.+-.|. .++....+=+.
T Consensus 732 ~k~g~-----~~~~~v~~vl~~L~~iin~~~~-~~tllENtAIT------------------------------------ 769 (885)
T KOG2023|consen 732 LKMGL-----KMKQYVSPVLEDLITIINRQNT-PKTLLENTAIT------------------------------------ 769 (885)
T ss_pred HHhch-----hhhhHHHHHHHHHHHHhcccCc-hHHHHHhhhhh------------------------------------
Confidence 11110 1123444444333332221111 11122222222
Q ss_pred HHHHHHHHHHHHHhhhhhH-HHHHhhhHHHHHhcc--CCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhh
Q 039448 895 SAAVKGLARLAYEFSDLVS-NVYKLLPSTFLLLQR--KNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDT 971 (1276)
Q Consensus 895 SatI~ALsrLl~ef~d~i~-~~~~ll~~v~llL~s--~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~ 971 (1276)
++||-|-..+.+. .+.+.+..-|.-|.. .|-|==.|-.||.++. .+....+-..+.-+..++-.|++ .
T Consensus 770 ------IGrLg~~~Pe~vAp~l~~f~~pWc~sl~~i~DneEK~sAFrG~c~mi--~vNp~~vv~~~~f~c~aiAsw~n-p 840 (885)
T KOG2023|consen 770 ------IGRLGYICPEEVAPHLDSFMRPWCTSLRNIDDNEEKESAFRGLCNMI--NVNPSGVVSSFIFICDAIASWSN-P 840 (885)
T ss_pred ------hhhhhccCHHhcchhHHHHHHHHHHHhcccccchhHHHHHHHHHHhe--eeCchhhhhhhHHHHHHHhcccC-h
Confidence 3333333333222 122222222333332 5555555678888863 33444455667888888999984 5
Q ss_pred HHHHHHHHHHHHHH---HHHhcCHHHHHhcCCHHHHHHHH
Q 039448 972 KNQFKSKIKLLLEM---LVKKCGLDAVKAVMPEEHMKLLK 1008 (1276)
Q Consensus 972 k~hfR~KVr~Iler---LIRKfG~e~V~~~~Pee~~KlL~ 1008 (1276)
++-+|.-+-.||.- .+-++.|+.-...+|+..+.+|.
T Consensus 841 ~~~l~~~f~kiL~g~k~qvg~~nW~~~~~qf~P~~~erl~ 880 (885)
T KOG2023|consen 841 EDDLRDEFYKILQGFKNQVGKINWQRFSEQFPPPLKERLQ 880 (885)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHhhcCChhHHHHHH
Confidence 57787766666554 44455555555557776665543
No 32
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.71 E-value=36 Score=42.49 Aligned_cols=232 Identities=17% Similarity=0.183 Sum_probs=141.8
Q ss_pred HHHhhhh---cCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhh----CCCCCccchHHHHHHHHHHHHhccCC
Q 039448 748 VAIKPAL---QDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEV----LPSCHFSAKRHRLDCLYFIIAHVSKD 820 (1276)
Q Consensus 748 ~~~~~~l---~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~----~~~~~~~ak~~RL~cL~~lv~~l~~~ 820 (1276)
+++.|++ .+.|.++---|..-|+.|+..+.+-+..++++|.+.+-.. -.++..+| ..+..+++.+...
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~a-----eLLdRLikdIVte 158 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGA-----ELLDRLIKDIVTE 158 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHH-----HHHHHHHHHhccc
Confidence 3445554 4555555556666778888877666666666666666543 22333332 2233334433332
Q ss_pred ChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH----HhccCCCCCCcccHHHHHHHHhhhccCCChhHHHH
Q 039448 821 DSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGR----AFGDEENGGGKENLYQFFNMVAGGLAGESPHMISA 896 (1276)
Q Consensus 821 ~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~----~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSa 896 (1276)
....-..+-+..++.|=|=.+ |.-||..-.+-|..+-. .|. .-+.+|+..++-.|+-+++..+.-
T Consensus 159 ~~~tFsL~~~ipLL~eriy~~---n~~tR~flv~Wl~~Lds~P~~~m~--------~yl~~~ldGLf~~LsD~s~eVr~~ 227 (675)
T KOG0212|consen 159 SASTFSLPEFIPLLRERIYVI---NPMTRQFLVSWLYVLDSVPDLEMI--------SYLPSLLDGLFNMLSDSSDEVRTL 227 (675)
T ss_pred cccccCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhcCCcHHHH--------hcchHHHHHHHHHhcCCcHHHHHH
Confidence 221112233344556655443 78888876666655432 222 235566666666678887877778
Q ss_pred HHHHHHHHHHHhhhhhHH--HHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHH-
Q 039448 897 AVKGLARLAYEFSDLVSN--VYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKN- 973 (1276)
Q Consensus 897 tI~ALsrLl~ef~d~i~~--~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~- 973 (1276)
+=++|+-++.|-+..-.. ..++.+....=++|++.||-.-||-++..+|...|.+ +-++++.++.+++....++-.
T Consensus 228 ~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~ 306 (675)
T KOG0212|consen 228 TDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEM 306 (675)
T ss_pred HHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccc
Confidence 888888887776432222 2234444445688999999988999999998766654 558899999999998776544
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHH
Q 039448 974 QFKSKIKLLLEMLVKKCGLDAVK 996 (1276)
Q Consensus 974 hfR~KVr~IlerLIRKfG~e~V~ 996 (1276)
|.|.--..+-+-|.+.||.+..+
T Consensus 307 ~i~~~a~~~n~~l~~l~s~~~~~ 329 (675)
T KOG0212|consen 307 SIKEYAQMVNGLLLKLVSSERLK 329 (675)
T ss_pred cHHHHHHHHHHHHHHHHhhhhhc
Confidence 55555455555666677666655
No 33
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=90.55 E-value=7.1 Score=48.01 Aligned_cols=160 Identities=18% Similarity=0.250 Sum_probs=97.3
Q ss_pred HHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHh----hhhhH---HHHHhhhHHHHH
Q 039448 853 YDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEF----SDLVS---NVYKLLPSTFLL 925 (1276)
Q Consensus 853 ~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef----~d~i~---~~~~ll~~v~ll 925 (1276)
|++|-.|-+.-. +++-++....+|..+.+-. .+-..+-|-||.||+.-| ...+. .+..+|.-.--|
T Consensus 138 fQIla~Lle~~~---~~~~p~~y~~L~~~Ll~p~----lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkL 210 (435)
T PF03378_consen 138 FQILAQLLELRP---SSPLPDAYKQLFPPLLSPA----LWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILGVFQKL 210 (435)
T ss_dssp HHHHHHHHHHSS-----S--TTTGGGHHHHTSGG----GGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHHHHHHH
T ss_pred HHHHHHHHHcCC---CCCCcHHHHHHHHHHcCcc----hhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHH
Confidence 677766666443 1223445555555554332 233445667788888766 33332 233444444568
Q ss_pred hccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHHHHHhcCHHHHHhcC----C
Q 039448 926 LQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQD-DTKNQFKSKIKLLLEMLVKKCGLDAVKAVM----P 1000 (1276)
Q Consensus 926 L~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~-d~k~hfR~KVr~IlerLIRKfG~e~V~~~~----P 1000 (1276)
+.|+.-|.. +.-++...|..+|.+.++++++.++.-|+.=-. .-...|+...=+.+--++=|+|.+.+-..+ |
T Consensus 211 i~sk~~D~~--gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~ 288 (435)
T PF03378_consen 211 IASKANDHY--GFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQP 288 (435)
T ss_dssp HT-TTCHHH--HHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTST
T ss_pred HCCCCcchH--HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcC
Confidence 999887754 666799999999999999999999988765433 334567777777788888999999886655 3
Q ss_pred HH-----HHHHHHHHHHHHHHHHhhh
Q 039448 1001 EE-----HMKLLKNIRKIKERKERKL 1021 (1276)
Q Consensus 1001 ee-----~~KlL~nIrK~~~R~kRkk 1021 (1276)
.= .+-++-+++|.....+||-
T Consensus 289 glF~~il~~v~lp~~~k~~~~~erKi 314 (435)
T PF03378_consen 289 GLFGMILEKVWLPDLQKVSGPIERKI 314 (435)
T ss_dssp THHHHHHHHTHHHHGGG--SHHHHHH
T ss_pred CcHHHHHHHHhcCchhhcCCcchhhH
Confidence 21 1234777888776667774
No 34
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=89.92 E-value=12 Score=49.11 Aligned_cols=190 Identities=16% Similarity=0.209 Sum_probs=141.0
Q ss_pred CCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhh-CCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHH
Q 039448 756 DDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEV-LPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFL 834 (1276)
Q Consensus 756 ~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~-~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~l 834 (1276)
+++-.-.|.|-..+-.+|+....-...+...+...++.. ...+-...-.-=+.||..|-..+... -.+|+..+.
T Consensus 264 s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-----~~~~~~~v~ 338 (815)
T KOG1820|consen 264 SKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-----FRKYAKNVF 338 (815)
T ss_pred ccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-----hHHHHHhhc
Confidence 556666788888888888855422333333344433333 33333444444456777665444332 357888899
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhh-H
Q 039448 835 TEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLV-S 913 (1276)
Q Consensus 835 pEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i-~ 913 (1276)
|=++=++||.....|+.+-..+..+++. ..+..++.+|..++.+.+|....-+-..+.|.+-...... .
T Consensus 339 p~lld~lkekk~~l~d~l~~~~d~~~ns----------~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 339 PSLLDRLKEKKSELRDALLKALDAILNS----------TPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred chHHHHhhhccHHHHHHHHHHHHHHHhc----------ccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcc
Confidence 9999999999999999999999999882 4588999999999999999999999999999999987422 2
Q ss_pred --HHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHH
Q 039448 914 --NVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASM 960 (1276)
Q Consensus 914 --~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~l 960 (1276)
++.++++.+...-...+.+|.+++++-+=..+.++-.+.+..+|..+
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~~~ 457 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLKDL 457 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 47788888777888899999999999888888888777777766544
No 35
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=89.63 E-value=2 Score=55.49 Aligned_cols=137 Identities=19% Similarity=0.215 Sum_probs=106.8
Q ss_pred HHHHHHhhhhhhhCCCCCCCCchhHHHHHHHhhhhccCcChHHHhhhhhhHHHHHHHHhhhcCCCchhHH-HHHHHHHHH
Q 039448 62 YFGATCSSLDRLLSSPDPDRSSHIIGSLSTILSLLLPKISVAVLKKKGDFLTDLVVRVVRLSSVTAGAVA-SGLTSLSRL 140 (1276)
Q Consensus 62 YFaAlms~L~~~~~~~~~~~~~~~~~a~lyLL~lv~p~vP~~vLr~kf~~~~~~l~~~l~~~~~~~~~lR-s~i~CL~~L 140 (1276)
+|+-..-.|.+-.. +++.....-.+..|+-|+.+||.+++...|..++-+|...|.-+ .+.+| |++.|+..+
T Consensus 864 fF~~ivP~l~~~~~----t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~---D~~v~vstl~~i~~~ 936 (1030)
T KOG1967|consen 864 FFCDIVPILVSKFE----TAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMP---DVIVRVSTLRTIPML 936 (1030)
T ss_pred HHHhhHHHHHHHhc----cCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCC---ccchhhhHhhhhhHH
Confidence 55555555555332 12456667788889999999999999999998888887777644 45664 889999999
Q ss_pred HhccCCCCCcchhhHHHHHHhhccCCc---hhHHHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHH
Q 039448 141 LTGRGRVNWSDVSQLYGVVLAFMTDSR---LKVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFL 206 (1276)
Q Consensus 141 L~aqd~~~W~~~~~~~~~LL~f~~d~R---PKVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~~~~~l 206 (1276)
|.--..-.=.++++.+-.+|+++-|+. ==||-.|-.|+..+.+ +.|++.+||.-+.|-..++..+
T Consensus 937 l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~-~~P~~~l~~fr~~Vl~al~k~L 1004 (1030)
T KOG1967|consen 937 LTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTR-RLPTKSLLSFRPLVLRALIKIL 1004 (1030)
T ss_pred HHhccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhc-cCCCcccccccHHHHHHhhhcc
Confidence 987766666778999999999999988 4589999999988775 4566789999988877777666
No 36
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=89.20 E-value=1.4e+02 Score=43.57 Aligned_cols=392 Identities=16% Similarity=0.132 Sum_probs=201.5
Q ss_pred HHHHHHHHhhhhCCCCCCcchhhhHH--HHHHHHHHHhcc-CcccHHHHHHHHHHHHHHhh----hhhcCCCCCchhhhh
Q 039448 543 DALVYSLWSLLPSFCNYPVDTAESFM--DLAGVLCSALHE-ENDIRGIICSSLQNLIQQNK----KTLEGKNDLSNVVIS 615 (1276)
Q Consensus 543 ~tL~~QlWsLLPgFC~~P~D~~~sF~--~lA~~L~~~L~~-~~~LR~~Ic~aLr~Li~~n~----~~~~~~~~~~~~~~~ 615 (1276)
+..++.||.+ |+.+.+..+.+. ...+.|..+|.+ .++.+...|..|+.|...|. .+.+.. .++
T Consensus 422 ~~Av~aL~~L----~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaG----aIP-- 491 (2102)
T PLN03200 422 EELIRALSSL----CCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAG----GIP-- 491 (2102)
T ss_pred HHHHHHHHHH----hCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC----CHH--
Confidence 4445566664 666667666663 356777777764 67899999999998875432 111111 100
Q ss_pred hHHHhhhhcCC----hHHHHHhHHHHH-------H-h-hHhHHHHHHHhhcCCCccccccHHHHHHHhhccCCHHHHHHH
Q 039448 616 TASQRAMAHYT----TKVATDNLNVLK-------S-S-ARELLSILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTRL 682 (1276)
Q Consensus 616 ~~~~~~~~~~s----~~~A~~nl~~L~-------~-~-A~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~~l~~~ 682 (1276)
...++- ..+ +++|..-+--|+ . . ..+-+|.|+++.....+........+|..++.-.+++.+..+
T Consensus 492 -~LV~LL-~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~L 569 (2102)
T PLN03200 492 -PLVQLL-ETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQL 569 (2102)
T ss_pred -HHHHHH-cCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 000000 001 111111111111 1 1 236688888888766555555555667666666666655222
Q ss_pred HHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHhHHHHHHHHHcCCCChhhHH-------HHHHHHhhhhc
Q 039448 683 FKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLNAKEID-------VLFVAIKPALQ 755 (1276)
Q Consensus 683 f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv~~l~~~~~~-------~Lf~~~~~~l~ 755 (1276)
+..|.. ..+......++.+-.++.-.+..... --...+...++
T Consensus 570 ----v~LLls--------------------------dd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~ 619 (2102)
T PLN03200 570 ----TALLLG--------------------------DLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLS 619 (2102)
T ss_pred ----HHHhcC--------------------------CChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHc
Confidence 111110 01122333455554443333322111 11233445667
Q ss_pred CCchhhhhHHHHHHHHHHhcCcchhhhhH-HHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHH-H
Q 039448 756 DDEGLIQKKAYKVLSTILRKCDGFLSSRL-EELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSS-F 833 (1276)
Q Consensus 756 ~~d~~~QKKAYk~L~~i~~~~~~f~~~~~-~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~-~ 833 (1276)
+.+...||.|+.+|..+|..+.+....-+ .+...-++..+.+.....++.=-.+|..+... ..+.++..++.. .
T Consensus 620 sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~----~~~~q~~~~v~~Ga 695 (2102)
T PLN03200 620 SSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRS----IKENRKVSYAAEDA 695 (2102)
T ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhC----CCHHHHHHHHHcCC
Confidence 88899999999999999986655433211 12333333444433344444444444444321 111122333443 3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhh--h-
Q 039448 834 LTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFS--D- 910 (1276)
Q Consensus 834 lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~--d- 910 (1276)
||=.+=-+++.+.+.++.|...|-.+...-.....-...+.+..++.++-- | ++.-.-.+..||..|...|. +
T Consensus 696 V~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~---G-~~~~k~~Aa~AL~~L~~~~~~~~~ 771 (2102)
T PLN03200 696 IKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLRE---G-TLEGKRNAARALAQLLKHFPVDDV 771 (2102)
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHh---C-ChHHHHHHHHHHHHHHhCCChhHH
Confidence 444555558888899998888887775521110000112345555555543 3 57778889999999998884 2
Q ss_pred hhHHH--HHhhhHHHHHhccCCHHHHHH--HHHHHHHHHhh------c-ChhHHH----HHHHHHHHHHhhcchhhHHHH
Q 039448 911 LVSNV--YKLLPSTFLLLQRKNREIIKA--NLGLLKVLVAK------S-HAEGLQ----IHLASMVEGLLKWQDDTKNQF 975 (1276)
Q Consensus 911 ~i~~~--~~ll~~v~llL~s~~REIvKs--aLgFvKV~v~~------l-p~~~l~----~~L~~lv~~Ll~ws~d~k~hf 975 (1276)
+...+ ...+...+.+|++.+-|++-. +|--+--+... . |.-... .-|..||.+| .+ .---+
T Consensus 772 ~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l---~~-~~p~~ 847 (2102)
T PLN03200 772 LKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCL---AE-GHPLV 847 (2102)
T ss_pred HHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHH---Hc-CChHH
Confidence 22322 244555677899888777764 32222111111 0 111111 2256677777 22 22234
Q ss_pred HHHHHHHHHHHHH
Q 039448 976 KSKIKLLLEMLVK 988 (1276)
Q Consensus 976 R~KVr~IlerLIR 988 (1276)
--|.=.||+||++
T Consensus 848 ~~kai~il~~~~~ 860 (2102)
T PLN03200 848 QDKAIEILSRLCR 860 (2102)
T ss_pred HHHHHHHHHHHhc
Confidence 4467778888887
No 37
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=89.00 E-value=33 Score=43.09 Aligned_cols=178 Identities=19% Similarity=0.370 Sum_probs=126.8
Q ss_pred HhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 039448 826 RSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLA 905 (1276)
Q Consensus 826 ~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl 905 (1276)
...+++.+++++.=-+|.....+|..|-++.-.+...+..- +..+-+...=.+++-.|++.-|.....-+.|+-++.
T Consensus 598 ~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c---~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~ 674 (975)
T COG5181 598 GKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKAC---GETKELAKLGNILYENLGEDYPEVLGSILKAICSIY 674 (975)
T ss_pred cCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhc---chHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHh
Confidence 35688999999988888777788999998877776655431 112334444467888999998988877777887765
Q ss_pred --HHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhH-----HHHHHHHHHHHHhhcchhhHHHHHHH
Q 039448 906 --YEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEG-----LQIHLASMVEGLLKWQDDTKNQFKSK 978 (1276)
Q Consensus 906 --~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~-----l~~~L~~lv~~Ll~ws~d~k~hfR~K 978 (1276)
..|+.+-+.+.+++|++.-.|.++.+.|+-+.+.||-.....-|... |+- -=++++.|-.|+.+.|+.--
T Consensus 675 sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRI-cfeLvd~Lks~nKeiRR~A~-- 751 (975)
T COG5181 675 SVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRI-CFELVDSLKSWNKEIRRNAT-- 751 (975)
T ss_pred hhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHH-HHHHHHHHHHhhHHHHHhhh--
Confidence 44555666788999999999999999999999999988877776422 211 24678888889887654322
Q ss_pred HHHHHHHHHHhcCHHHHHhcC-CHHHHHHHHHHHHHHHHHHhh
Q 039448 979 IKLLLEMLVKKCGLDAVKAVM-PEEHMKLLKNIRKIKERKERK 1020 (1276)
Q Consensus 979 Vr~IlerLIRKfG~e~V~~~~-Pee~~KlL~nIrK~~~R~kRk 1020 (1276)
.-||+ |...+ |.+-.-.|-|=-|..+|..|-
T Consensus 752 ---------~tfG~--Is~aiGPqdvL~~LlnnLkvqeRq~Rv 783 (975)
T COG5181 752 ---------ETFGC--ISRAIGPQDVLDILLNNLKVQERQQRV 783 (975)
T ss_pred ---------hhhhh--HHhhcCHHHHHHHHHhcchHHHHHhhh
Confidence 23454 54544 666555555556777887765
No 38
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=88.92 E-value=7.3 Score=42.26 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=95.7
Q ss_pred ccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHH-hhh-hhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcC-
Q 039448 873 ENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYE-FSD-LVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSH- 949 (1276)
Q Consensus 873 ~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~e-f~d-~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp- 949 (1276)
=..+.|+-+.+-||.=..--..--|+.++.-|+-. ..+ .++.+.+++.-+-.-|.+++.||+.++|.-+..+|.+.+
T Consensus 34 Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~ 113 (183)
T PF10274_consen 34 LDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDM 113 (183)
T ss_pred cchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhh
Confidence 35778899999999854433556777788888777 444 555678888888889999999999999999999988877
Q ss_pred -hhHHHHHHHHHHHHHhh--cch---------hhHHHHHHHHHHHHHHHHHhcCHHHH
Q 039448 950 -AEGLQIHLASMVEGLLK--WQD---------DTKNQFKSKIKLLLEMLVKKCGLDAV 995 (1276)
Q Consensus 950 -~~~l~~~L~~lv~~Ll~--ws~---------d~k~hfR~KVr~IlerLIRKfG~e~V 995 (1276)
-+.|-||+..|++-+-- -.. ..+..++..|..-|+.|=|.-|-|+.
T Consensus 114 vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~ 171 (183)
T PF10274_consen 114 VGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAF 171 (183)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHH
Confidence 68889999999998751 122 34466777888889988888888865
No 39
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=88.59 E-value=64 Score=46.34 Aligned_cols=242 Identities=12% Similarity=0.079 Sum_probs=127.7
Q ss_pred hHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhccCC---CCCcchhhHHHHHHhhccCCchhHHHHHHHHHHHHHhccCC
Q 039448 111 FLTDLVVRVVRLSSVTAGAVASGLTSLSRLLTGRGR---VNWSDVSQLYGVVLAFMTDSRLKVRRQSHLCVREILLSLQG 187 (1276)
Q Consensus 111 ~~~~~l~~~l~~~~~~~~~lRs~i~CL~~LL~aqd~---~~W~~~~~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~ 187 (1276)
++++-+..++.. +.+..+=.-++.|+..++.+.-. +-|..+ |..+-.-..+..|.+=+.|-+.+..|...+..
T Consensus 1182 efLkPfe~im~~-s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktI---F~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~ 1257 (1780)
T PLN03076 1182 EFMKPFVIVMRK-SNAVEIRELIIRCVSQMVLSRVNNVKSGWKSM---FMVFTTAAYDDHKNIVLLAFEIIEKIIREYFP 1257 (1780)
T ss_pred HHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhcCcHHH---HHHHHHHHhCccHHHHHHHHHHHHHHHHhhhh
Confidence 566666666653 23333333677999998887643 466554 33333223477888999999999999986422
Q ss_pred C-CCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhccCCCchh----------------------
Q 039448 188 T-LVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECLPLMSTKY---------------------- 244 (1276)
Q Consensus 188 ~-p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~~~~~~~---------------------- 244 (1276)
. |...+ .+..-|...+.... .+ .......|+.+.+|+.|...+...+
T Consensus 1258 ~l~~~~~---~~F~DlV~cL~~Fa-~q------~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~ 1327 (1780)
T PLN03076 1258 YITETET---TTFTDCVNCLIAFT-NS------RFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKD 1327 (1780)
T ss_pred hccccch---hHHHHHHHHHHHHH-hC------cCcccccHHHHHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 1 11111 22222333332111 00 0122356777777775532221100
Q ss_pred --------------HHHHHHHHHHhhcc---CchhHHHHHHHHHHHHhcCCCCCCCHHH----HHHHHHHhcccCC----
Q 039448 245 --------------TAVILKYFKTLLEL---RQPLVTRRVTDALNVICLHPTLEVSAEA----LLDLLCSLALSVS---- 299 (1276)
Q Consensus 245 --------------~~~i~~~ll~Ll~l---~n~~lt~~~~~~~~~lf~~~~~~l~~~~----~~~li~aL~~~~~---- 299 (1276)
..--..++..|-.+ ..+=|...|+++|..++..-...++++. .-++|+.+.+...
T Consensus 1328 ~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~ 1407 (1780)
T PLN03076 1328 GKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAID 1407 (1780)
T ss_pred ccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 01112222222222 5677888899988777766667777653 3345555433211
Q ss_pred ----C---------CCCchhhHHHHHHHHHHHHHHHHhcC----HhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 039448 300 ----T---------NETSADAMTFTARLLNVGMIKIYSIN----REICSTKLPIVFNALKDILASEHEEAIFAATEALKN 362 (1276)
Q Consensus 300 ----~---------~~~~~~~l~~~~~vl~~a~~~l~~~~----~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~ 362 (1276)
+ .+...+.=.|+...+..|+..+..+= ..++. -||+++..+..|...+++.+...+.+||+.
T Consensus 1408 ~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~-~L~~~l~ll~~ci~q~n~~la~ig~~~l~~ 1486 (1780)
T PLN03076 1408 PSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNP-LLKKVLMLLVSFIKRPHQSLAGIGIAAFVR 1486 (1780)
T ss_pred cccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 0 00001111343333333443333321 12222 678888888888888888888888888887
Q ss_pred HHHHh
Q 039448 363 LINAC 367 (1276)
Q Consensus 363 li~~c 367 (1276)
+|..+
T Consensus 1487 li~~n 1491 (1780)
T PLN03076 1487 LMSNA 1491 (1780)
T ss_pred HHHHh
Confidence 76543
No 40
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.33 E-value=95 Score=40.53 Aligned_cols=173 Identities=19% Similarity=0.259 Sum_probs=110.4
Q ss_pred CCCCCcchhhhHHHHHHHHHHHhc----------------cCcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHH
Q 039448 556 FCNYPVDTAESFMDLAGVLCSALH----------------EENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQ 619 (1276)
Q Consensus 556 FC~~P~D~~~sF~~lA~~L~~~L~----------------~~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~ 619 (1276)
.|.--.|....|+++.+.|...|. ..|.|..-|++-||.|= +| +.|.
T Consensus 206 ~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLG-q~--------d~da-------- 268 (866)
T KOG1062|consen 206 LCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILG-QN--------DADA-------- 268 (866)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhc-CC--------CccH--------
Confidence 355555777888776666655543 12668888888777552 21 1111
Q ss_pred hhhhcCChHHHHHhHHHHHHhhHhHHHHHHHhhcC--CCcccc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH
Q 039448 620 RAMAHYTTKVATDNLNVLKSSARELLSILSRIFLE--SAKDEG-GCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQE 696 (1276)
Q Consensus 620 ~~~~~~s~~~A~~nl~~L~~~A~n~L~vLfNvy~~--~~~~~~-~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~ 696 (1276)
+..+=-+|--+++. +.++.+ .-+.+||++..+|-+..-+...=-+++.|++...
T Consensus 269 ---------------------Sd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~-- 325 (866)
T KOG1062|consen 269 ---------------------SDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNR-- 325 (866)
T ss_pred ---------------------HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCC--
Confidence 11222233344433 333333 3345999999999999999999999999987432
Q ss_pred hcccccccCCCcccccCCCCCCCchhhHhHHHHHHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcC
Q 039448 697 AGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKC 776 (1276)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~ 776 (1276)
+...|+.-|+-+.-+|+ .+...+..-=.+|...|+++|..+|+||..++..|...
T Consensus 326 -----------------------d~NirYvaLn~L~r~V~-~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~- 380 (866)
T KOG1062|consen 326 -----------------------DNNIRYVALNMLLRVVQ-QDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNE- 380 (866)
T ss_pred -----------------------ccceeeeehhhHHhhhc-CCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcc-
Confidence 11244444554444444 34444444445788899999999999999999999874
Q ss_pred cchhhhhHHHHHHHHHhhCCCC
Q 039448 777 DGFLSSRLEELLGLMIEVLPSC 798 (1276)
Q Consensus 777 ~~f~~~~~~el~~~L~~~~~~~ 798 (1276)
+|+..+.+-|++-+.++
T Consensus 381 -----~Nv~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 381 -----SNVRVMVKELLEFLESS 397 (866)
T ss_pred -----ccHHHHHHHHHHHHHhc
Confidence 46666777777666655
No 41
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=88.33 E-value=54 Score=37.72 Aligned_cols=223 Identities=17% Similarity=0.211 Sum_probs=140.7
Q ss_pred hhHhHHHHHHHHHc---C--CCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCC
Q 039448 722 FMRARLFDLALSLL---P--GLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLP 796 (1276)
Q Consensus 722 ~~~~~llDL~~alv---~--~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~ 796 (1276)
..|..-+-++..++ | .++.+.+..|++++..-+. |...-.-|.+.|..+.. ...|-.+....+.+.+.+...
T Consensus 14 ~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~--D~~~~~~~l~gl~~L~~-~~~~~~~~~~~i~~~l~~~~~ 90 (262)
T PF14500_consen 14 IIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLD--DHACVQPALKGLLALVK-MKNFSPESAVKILRSLFQNVD 90 (262)
T ss_pred HHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhc--cHhhHHHHHHHHHHHHh-CcCCChhhHHHHHHHHHHhCC
Confidence 44544444444333 3 3667789999988776663 45555566888888884 455666667777777776444
Q ss_pred CCCccchHHHHHHHHHHHHhccCCChHH---HHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcc
Q 039448 797 SCHFSAKRHRLDCLYFIIAHVSKDDSEQ---RRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKE 873 (1276)
Q Consensus 797 ~~~~~ak~~RL~cL~~lv~~l~~~~~~~---~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~ 873 (1276)
+++-.+..|+.|+..+-..+.+ ..+. -..+|+..++. +|= =|-.-+.=-.+|+++..+.+.+.- .+
T Consensus 91 -~q~~~q~~R~~~~~ll~~l~~~-~~~~l~~~~~~fv~~~i~-~~~--gEkDPRnLl~~F~l~~~i~~~~~~------~~ 159 (262)
T PF14500_consen 91 -VQSLPQSTRYAVYQLLDSLLEN-HREALQSMGDDFVYGFIQ-LID--GEKDPRNLLLSFKLLKVILQEFDI------SE 159 (262)
T ss_pred -hhhhhHHHHHHHHHHHHHHHHH-hHHHHHhchhHHHHHHHH-Hhc--cCCCHHHHHHHHHHHHHHHHhccc------ch
Confidence 5677889999988766433222 2110 01245544443 222 234446777899999999998752 57
Q ss_pred cHHHHHHHHhhhcc------CCChhHHHHHHH--HHHHHH---HHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHH
Q 039448 874 NLYQFFNMVAGGLA------GESPHMISAAVK--GLARLA---YEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLK 942 (1276)
Q Consensus 874 ~l~ef~~mV~aGLa------G~tphMiSatI~--ALsrLl---~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvK 942 (1276)
-.+++|..++.++- ...|+=|+.-=+ +|..-+ ..| ....++.++-=|.|.+..+-.-+|..++
T Consensus 160 ~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f------a~~~~p~LleKL~s~~~~~K~D~L~tL~ 233 (262)
T PF14500_consen 160 FAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF------APFAFPLLLEKLDSTSPSVKLDSLQTLK 233 (262)
T ss_pred hHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh------HHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 79999999998864 223443333222 111111 111 2344555555677777776667999999
Q ss_pred HHHhhcChhHHHHHHHHHHHHH
Q 039448 943 VLVAKSHAEGLQIHLASMVEGL 964 (1276)
Q Consensus 943 V~v~~lp~~~l~~~L~~lv~~L 964 (1276)
.|+...+.+.+.+|+..|..+|
T Consensus 234 ~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 234 ACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHCCHHHHHHHHHHHHHHH
Confidence 9999999999999999987765
No 42
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=87.71 E-value=61 Score=40.61 Aligned_cols=218 Identities=17% Similarity=0.178 Sum_probs=0.0
Q ss_pred CCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccc-hHHHHHHHHHHHH
Q 039448 737 GLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSA-KRHRLDCLYFIIA 815 (1276)
Q Consensus 737 ~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~a-k~~RL~cL~~lv~ 815 (1276)
.++.+.-+.+-..+...|.+.++..=--|-.+|..|.... .-.+.-.++.+.|......-++.+ |.+-|..+...
T Consensus 86 ~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E--lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~-- 161 (858)
T COG5215 86 GMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME--LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYH-- 161 (858)
T ss_pred cCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh--CccccchHHHHHHHHhccccCchHhHHHHHHHHHHH--
Q ss_pred hccCCChHHHHhhhHHHHHHHHHHHh-h-hhhHHHHHHH----HHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCC
Q 039448 816 HVSKDDSEQRRSYILSSFLTEIILAL-K-EANKRTRNRA----YDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGE 889 (1276)
Q Consensus 816 ~l~~~~~~~~~~~~i~~~lpEiIL~~-K-e~N~ktR~~A----~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~ 889 (1276)
|...+++.....-..+|-+|+.+- | |.....|-+| |+-|..+-.-|..+ +..+-|++.|+-.--|.
T Consensus 162 --ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E------~erNy~mqvvceatq~~ 233 (858)
T COG5215 162 --CESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYE------EERNYFMQVVCEATQGN 233 (858)
T ss_pred --hhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcch------hhhchhheeeehhccCC
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhhHH-HHHhhhHHHH-HhccCCHHHHHHHHHHH-HHHHhhcChhHHHHHHH--------
Q 039448 890 SPHMISAAVKGLARLAYEFSDLVSN-VYKLLPSTFL-LLQRKNREIIKANLGLL-KVLVAKSHAEGLQIHLA-------- 958 (1276)
Q Consensus 890 tphMiSatI~ALsrLl~ef~d~i~~-~~~ll~~v~l-lL~s~~REIvKsaLgFv-KV~v~~lp~~~l~~~L~-------- 958 (1276)
....+.|+..+|.+++.=|.+.|.. +.+.|-.... +|.|.|-||.--++-|- -+|-...+.++...++|
T Consensus 234 d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~ 313 (858)
T COG5215 234 DEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHG 313 (858)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcc
Q ss_pred -----H--HHHHHhh
Q 039448 959 -----S--MVEGLLK 966 (1276)
Q Consensus 959 -----~--lv~~Ll~ 966 (1276)
- ++|.|++
T Consensus 314 fa~aav~dvlP~lL~ 328 (858)
T COG5215 314 FARAAVADVLPELLS 328 (858)
T ss_pred hHHHHHHHHHHHHHH
No 43
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=86.98 E-value=1.9e+02 Score=42.42 Aligned_cols=226 Identities=17% Similarity=0.122 Sum_probs=129.5
Q ss_pred HHHHHHHHHhccCC-----CCCcc-------------hh--hHHHHHHhhccCCchhHHHHHHHHHHHHHhccCCCCCcc
Q 039448 133 GLTSLSRLLTGRGR-----VNWSD-------------VS--QLYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLA 192 (1276)
Q Consensus 133 ~i~CL~~LL~aqd~-----~~W~~-------------~~--~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~p~~h 192 (1276)
+|.+|..||...+. +.|.- +. .++.-|+.+--+...+|||.|.-|+.++..+....-..+
T Consensus 610 gL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~ 689 (2102)
T PLN03200 610 ALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVS 689 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 67777777776533 34421 11 145566777778888999999999999886321100000
Q ss_pred chhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhccCCCchhH----HHHHHHHHHhhccCchhHHHHHH
Q 039448 193 PASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECLPLMSTKYT----AVILKYFKTLLELRQPLVTRRVT 268 (1276)
Q Consensus 193 pas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~~~~~~~~----~~i~~~ll~Ll~l~n~~lt~~~~ 268 (1276)
-....+..-+++.+. + .....+-+++..|..++.. +.... ....+.+..+|.-+++=...+|-
T Consensus 690 ~v~~GaV~pL~~LL~----~--------~d~~v~e~Al~ALanLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa 756 (2102)
T PLN03200 690 YAAEDAIKPLIKLAK----S--------SSIEVAEQAVCALANLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAA 756 (2102)
T ss_pred HHHcCCHHHHHHHHh----C--------CChHHHHHHHHHHHHHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHH
Confidence 111222333444432 0 1223445555555555543 22111 23467788888889999999999
Q ss_pred HHHHHHhcCCC-CC-C-CHHHHHHHHHHhcccCCCCCCch----hhHHHHHHHHHHHHHHHHhcCHhHHhhhhhHHHHHH
Q 039448 269 DALNVICLHPT-LE-V-SAEALLDLLCSLALSVSTNETSA----DAMTFTARLLNVGMIKIYSINREICSTKLPIVFNAL 341 (1276)
Q Consensus 269 ~~~~~lf~~~~-~~-l-~~~~~~~li~aL~~~~~~~~~~~----~~l~~~~~vl~~a~~~l~~~~~~~c~~~LP~~f~~~ 341 (1276)
.+++.|+.+.+ ++ + ........+.+|.++..+.+... +.+-.++.+...++..-.+.+|-.-+...|.-+..+
T Consensus 757 ~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l 836 (2102)
T PLN03200 757 RALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPL 836 (2102)
T ss_pred HHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHH
Confidence 99999998776 22 2 12223344555444444332211 122222211111222222224555566778888889
Q ss_pred HHHhcCCchhHHHHHHHHHHHHHHHhhchhHHh
Q 039448 342 KDILASEHEEAIFAATEALKNLINACIDESLIK 374 (1276)
Q Consensus 342 ~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~ 374 (1276)
+.||+.+++.+...|-+.|..+ |=|...+.
T Consensus 837 ~~~l~~~~p~~~~kai~il~~~---~~~~~~~~ 866 (2102)
T PLN03200 837 VRCLAEGHPLVQDKAIEILSRL---CRDQPVVL 866 (2102)
T ss_pred HHHHHcCChHHHHHHHHHHHHH---hccChhHH
Confidence 9999999999999999999877 66655554
No 44
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=85.58 E-value=15 Score=48.31 Aligned_cols=188 Identities=18% Similarity=0.160 Sum_probs=137.0
Q ss_pred CCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHH
Q 039448 798 CHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQ 877 (1276)
Q Consensus 798 ~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~e 877 (1276)
..++-+++|...|..++..+.....+ -...+...+..=+=+-.||+|...=..|-.+|..|+.+|... ...
T Consensus 262 ~~s~~WK~R~Eale~l~~~l~e~~~~-~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~--------~~~ 332 (815)
T KOG1820|consen 262 MLSKKWKDRKEALEELVAILEEAKKE-IVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL--------FRK 332 (815)
T ss_pred hhccchHHHHHHHHHHHHHHhccccc-cccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh--------hHH
Confidence 34567999999999988776443200 000111111111112248999999999999999999998642 556
Q ss_pred HHHHHhhhcc----CCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHH
Q 039448 878 FFNMVAGGLA----GESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGL 953 (1276)
Q Consensus 878 f~~mV~aGLa----G~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l 953 (1276)
|..+|.-+|- -.-++|+-+++.|+-.++- ...+..+.+.|..+|.++|.-+---+.-|.--++..++...+
T Consensus 333 ~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~n-----s~~l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~ 407 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEKKSELRDALLKALDAILN-----STPLSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV 407 (815)
T ss_pred HHHhhcchHHHHhhhccHHHHHHHHHHHHHHHh-----cccHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence 6666665543 3347888888887766544 223667788889999999999998888888888888884333
Q ss_pred -HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCHHHHHhcC
Q 039448 954 -QIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDAVKAVM 999 (1276)
Q Consensus 954 -~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~e~V~~~~ 999 (1276)
..-+.++++.+.....|+..--|..-...+--++|.||.+.++.+.
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L 454 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLL 454 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4446889999999999999999999999999999999999997765
No 45
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=85.27 E-value=6.4 Score=47.84 Aligned_cols=122 Identities=20% Similarity=0.241 Sum_probs=77.2
Q ss_pred HHHHHHHHhhhhcC-CchhhhhHHHHHHHHHHhcCcchhhhhHH-HHHHHHHhhCCCCC------------ccchHHHHH
Q 039448 743 IDVLFVAIKPALQD-DEGLIQKKAYKVLSTILRKCDGFLSSRLE-ELLGLMIEVLPSCH------------FSAKRHRLD 808 (1276)
Q Consensus 743 ~~~Lf~~~~~~l~~-~d~~~QKKAYk~L~~i~~~~~~f~~~~~~-el~~~L~~~~~~~~------------~~ak~~RL~ 808 (1276)
+..|...+..+|.+ .+...-|-|.|+|.++|+....-+....+ .|+++|....++.. .-+...=+.
T Consensus 327 f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 327 FAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh
Confidence 33333334455655 67888899999999999976654444443 34455444433211 112222233
Q ss_pred HHHHHHHhccCCCh------------------HHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Q 039448 809 CLYFIIAHVSKDDS------------------EQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFG 864 (1276)
Q Consensus 809 cL~~lv~~l~~~~~------------------~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~ 864 (1276)
||.-+...+...++ -++....++.+.|=+|=++-..+.-+|+.|.=+||.|-+...
T Consensus 407 ~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG 480 (516)
T KOG2956|consen 407 CIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVG 480 (516)
T ss_pred HHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHh
Confidence 44444333333221 114567889999999999999999999999999999988765
No 46
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.22 E-value=33 Score=47.24 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=90.0
Q ss_pred hhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 039448 779 FLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQ 858 (1276)
Q Consensus 779 f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~ 858 (1276)
-+..++.||.+-|+.. ++.--+|-|-+|=..+...+...+.+ +..+.++.+.--+--..-|.-+.+|++|-.....
T Consensus 1032 ~vd~y~neIl~eLL~~---lt~kewRVReasclAL~dLl~g~~~~-~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~ 1107 (1702)
T KOG0915|consen 1032 VVDEYLNEILDELLVN---LTSKEWRVREASCLALADLLQGRPFD-QVKEKLPELWEAAFRVMDDIKESVREAADKAARA 1107 (1702)
T ss_pred HHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665544444 55666677766544444333332211 2233444333222233368889999999888888
Q ss_pred HHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHH
Q 039448 859 IGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANL 938 (1276)
Q Consensus 859 mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaL 938 (1276)
++..+.........+.=.+++..|..-|-++ || | |+-.||.+.+|
T Consensus 1108 lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~--gi--------------------------------m-s~v~evr~~si 1152 (1702)
T KOG0915|consen 1108 LSKLCVRICDVTNGAKGKEALDIILPFLLDE--GI--------------------------------M-SKVNEVRRFSI 1152 (1702)
T ss_pred HHHHHhhhcccCCcccHHHHHHHHHHHHhcc--Cc--------------------------------c-cchHHHHHHHH
Confidence 7776665433333445556665555555442 22 2 66677777777
Q ss_pred HHHHHHHhhcChhHHHHHHHHHHHHHhhcch
Q 039448 939 GLLKVLVAKSHAEGLQIHLASMVEGLLKWQD 969 (1276)
Q Consensus 939 gFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~ 969 (1276)
|-+-=++.+.+. ++.||.|.+++.|++--.
T Consensus 1153 ~tl~dl~Kssg~-~lkP~~~~LIp~ll~~~s 1182 (1702)
T KOG0915|consen 1153 GTLMDLAKSSGK-ELKPHFPKLIPLLLNAYS 1182 (1702)
T ss_pred HHHHHHHHhchh-hhcchhhHHHHHHHHHcc
Confidence 776666666664 888999999999887654
No 47
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=85.10 E-value=1.1e+02 Score=38.22 Aligned_cols=234 Identities=17% Similarity=0.222 Sum_probs=130.3
Q ss_pred chhHHHHHHHHHHhhc----cCCCchhHHHHHHHHHHhhc-cCchhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcc
Q 039448 222 GAQEVLYVLDALKECL----PLMSTKYTAVILKYFKTLLE-LRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLAL 296 (1276)
Q Consensus 222 ~~~~~lh~L~lLk~~l----~~~~~~~~~~i~~~ll~Ll~-l~n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~ 296 (1276)
+.....-+|+++.+++ ..+....+..+...+..+.. -+++-.-.+|++.|.++-.. ..++.+.+..+|..|..
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y--~~iP~~sl~~~i~vLCs 224 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITY--GDIPSESLSPCIEVLCS 224 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHc--CcCChHHHHHHHHHHhh
Confidence 3455666777777776 34455666666666555532 24555558999999998642 34555554444444333
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHHHHHhcCHhHHhhhh-hHHHHHHHHHhcC------CchhHHHHHHHHHHHHHHHh--
Q 039448 297 SVSTNETSADAMTFTARLLNVGMIKIYSINREICSTKL-PIVFNALKDILAS------EHEEAIFAATEALKNLINAC-- 367 (1276)
Q Consensus 297 ~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~~~c~~~L-P~~f~~~~~~l~S------~~~~v~~~as~~L~~li~~c-- 367 (1276)
..+..+..++ .| + .+.+|++ .+. ...+.++.++|.+ +...+..+|-..|..++...
T Consensus 225 i~~~~~l~~~---~w-~----~m~nL~~-------S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~ 289 (464)
T PF11864_consen 225 IVNSVSLCKP---SW-R----TMRNLLK-------SHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGE 289 (464)
T ss_pred Hhcccccchh---HH-H----HHHHHHc-------CccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhcccc
Confidence 3222233322 33 2 3344433 333 5667788888832 23456678888888877766
Q ss_pred -----h--chhHHhhhcccccccCCCcCCCChHHHHHHHHHHHhhh-----hcchhhhHHHHHHHHHHHHHhhcccchhh
Q 039448 368 -----I--DESLIKQGVDQITNVNSDARKSGPTVIEKICATVESLL-----DYHYSAVWDMAFQIVSTMFDKLGTYSSYF 435 (1276)
Q Consensus 368 -----i--~~~~~~~~v~~~~~~~~~~~~~~~~~i~~i~~~~~~~L-----~~~y~~aw~~vL~vl~~lf~~lg~~~~~~ 435 (1276)
+ .+..+..+.....+ ...+.+--.|+..+..++ ..=....|..++.++..+++.+.....+.
T Consensus 290 ~~~~~l~~~~~~vl~sl~~al~------~~~~~v~~eIl~~i~~ll~~~~~~~l~~~~W~~~~~i~~~~~~~~~~~~~~~ 363 (464)
T PF11864_consen 290 QGYPSLPFSPSSVLPSLLNALK------SNSPRVDYEILLLINRLLDGKYGRELSEEDWDIILDIIEEIFDKIQPFDSWY 363 (464)
T ss_pred CCcceecccHHHHHHHHHHHHh------CCCCeehHHHHHHHHHHHhHhhhhhhcccCchHHHHHHHHHHhhcccccccc
Confidence 1 12113222111000 001111123334444444 21123589999999999999887653322
Q ss_pred ------------HHHHHHHHHhhhcCCCCCCc-chhHHHHHHHHHHHhcChhhHhhcc
Q 039448 436 ------------MRGALKNLADMQNLPDEDFP-YRKQLHECVGSAVGSMGPETFLCLL 480 (1276)
Q Consensus 436 ------------l~~~L~~l~~lr~~~~~~f~-~~~~ld~~iGaAi~amGPe~vL~~l 480 (1276)
+..++..|..|-.. .+|. -+..+-+.+-..-..+-+..++.+|
T Consensus 364 ~~~~~~~~~~~~~~~l~~~ie~L~~~--~~~~g~~~~~~~f~~~~~~~lp~s~~~~vl 419 (464)
T PF11864_consen 364 SNSSSLDQLSSNLHSLLSSIESLYEQ--HDFNGPKDKLFNFFERVHSYLPDSSALLVL 419 (464)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHhC--CCcCccHHHHHHHHHHHhccCCHHHHHHHH
Confidence 55566666666552 3565 5666777777777777788888777
No 48
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=85.04 E-value=35 Score=41.19 Aligned_cols=117 Identities=21% Similarity=0.205 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhcc---CCChhHHHHHHHHHHHHHHHhh----------hhh
Q 039448 846 KRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLA---GESPHMISAAVKGLARLAYEFS----------DLV 912 (1276)
Q Consensus 846 ~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLa---G~tphMiSatI~ALsrLl~ef~----------d~i 912 (1276)
.-.|.+|.++|..+++++.+. ....+..|++.+..-.+ ...+--.-++|--++.|...-. +++
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~----v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQ----VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred CCcHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 346889999999999988652 23445566665554222 2234567777777777765541 112
Q ss_pred HHHHHhhhHH-HHHh--ccCCHHHHHH-HHHHHHHHHhhcChhHHHHHHHHHHHHHhhc
Q 039448 913 SNVYKLLPST-FLLL--QRKNREIIKA-NLGLLKVLVAKSHAEGLQIHLASMVEGLLKW 967 (1276)
Q Consensus 913 ~~~~~ll~~v-~llL--~s~~REIvKs-aLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~w 967 (1276)
+ +.+.+.+. .--| ..+...|.|+ ||.|+-++-..+|.+.+..-+|.++..|..-
T Consensus 301 ~-v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~ 358 (370)
T PF08506_consen 301 D-VVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSS 358 (370)
T ss_dssp --HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS
T ss_pred c-HHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCC
Confidence 1 23333332 2222 3466788999 9999999999999998888888888777543
No 49
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=84.55 E-value=6.7 Score=38.17 Aligned_cols=93 Identities=23% Similarity=0.238 Sum_probs=61.8
Q ss_pred chHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 039448 802 AKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNM 881 (1276)
Q Consensus 802 ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~m 881 (1276)
.|+.=|-||..+...+.+. ..+++..+++-|+-|.-|.+.++|-.|.+.|..|.....+. .-..+++.|..
T Consensus 2 ~R~ggli~Laa~ai~l~~~-----~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~----~l~~f~~IF~~ 72 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-----ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE----ILPYFNEIFDA 72 (97)
T ss_pred chhHHHHHHHHHHHHchHh-----HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 3555566777765565554 36789999999999999999999999999999999876542 11123344444
Q ss_pred HhhhccCCChhHHHHHHHHHHHH
Q 039448 882 VAGGLAGESPHMISAAVKGLARL 904 (1276)
Q Consensus 882 V~aGLaG~tphMiSatI~ALsrL 904 (1276)
++--++-..+...+|+ .-|-||
T Consensus 73 L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 73 LCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHcCCchhHHHHH-HHHHHH
Confidence 4444445445555554 444444
No 50
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=84.36 E-value=74 Score=40.23 Aligned_cols=265 Identities=18% Similarity=0.243 Sum_probs=144.6
Q ss_pred HHHHHHHHhccCCCCCcchhhHHHHHHhhccCCchhHHHHHHHHHHHHHhccCCCCCccchhHH--HHHHHHHHHHHhCC
Q 039448 134 LTSLSRLLTGRGRVNWSDVSQLYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLAPASEA--ITNMFEKFLLLAGG 211 (1276)
Q Consensus 134 i~CL~~LL~aqd~~~W~~~~~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~p~~hpas~~--~a~~~~~~l~~~~~ 211 (1276)
+.|.++.+.+-|.--=.+.++....+|.+--++-|-||-+|.+-+..+..-. .++|..... +...+-+.+
T Consensus 584 l~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vl---k~c~e~~~l~klg~iLyE~l----- 655 (975)
T COG5181 584 LPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVL---KACGETKELAKLGNILYENL----- 655 (975)
T ss_pred EecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH---HhcchHHHHHHHhHHHHHhc-----
Confidence 3566666655555544556668888888889999999999988665443211 123332211 111111111
Q ss_pred CCCCcCCCCcchhHHH-HHHHHHHhhccCCCch----hHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCCCCCCCHHH
Q 039448 212 SNTSADEKPKGAQEVL-YVLDALKECLPLMSTK----YTAVILKYFKTLLELRQPLVTRRVTDALNVICLHPTLEVSAEA 286 (1276)
Q Consensus 212 s~~~~~~~~~~~~~~l-h~L~lLk~~l~~~~~~----~~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~l~~~~ 286 (1276)
| ...+++| .+|+.+..|.+...-. |++.|.+.+.-+|.-.++=|..+....++.++...++-+++-.
T Consensus 656 -------g-e~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rE 727 (975)
T COG5181 656 -------G-EDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVRE 727 (975)
T ss_pred -------C-cccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHH
Confidence 1 1344454 5788888888776555 8899999998888888888888888877777766554332222
Q ss_pred HHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH
Q 039448 287 LLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINREICSTKLPIVFNALKDILASEHEEAIFAATEALKNLINA 366 (1276)
Q Consensus 287 ~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ 366 (1276)
|+ + .|++. .+.|-|-..++|.+|++++- .|..
T Consensus 728 -----------------------WM-R---------------IcfeL--------vd~Lks~nKeiRR~A~~tfG-~Is~ 759 (975)
T COG5181 728 -----------------------WM-R---------------ICFEL--------VDSLKSWNKEIRRNATETFG-CISR 759 (975)
T ss_pred -----------------------HH-H---------------HHHHH--------HHHHHHhhHHHHHhhhhhhh-hHHh
Confidence 22 2 23322 23445556666666666663 5555
Q ss_pred hhchhHHhhh-cccccccCCCcCCC---ChHHHHHHH---HHHHhhh-hcchhh--hHHHHHHHHHHHHHhhcccchhhH
Q 039448 367 CIDESLIKQG-VDQITNVNSDARKS---GPTVIEKIC---ATVESLL-DYHYSA--VWDMAFQIVSTMFDKLGTYSSYFM 436 (1276)
Q Consensus 367 ci~~~~~~~~-v~~~~~~~~~~~~~---~~~~i~~i~---~~~~~~L-~~~y~~--aw~~vL~vl~~lf~~lg~~~~~~l 436 (1276)
.|.|+-++.. .+.+..+....+.. +-.++.+.| +.+-.++ +|+--. .-+-||.-++-||+..|..+-.+.
T Consensus 760 aiGPqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYv 839 (975)
T COG5181 760 AIGPQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYV 839 (975)
T ss_pred hcCHHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5555433321 11110000000000 012222222 1122222 233322 335789999999999999876443
Q ss_pred HHHHHHHHhhhcCCCCCCcchhHHHHHH
Q 039448 437 RGALKNLADMQNLPDEDFPYRKQLHECV 464 (1276)
Q Consensus 437 ~~~L~~l~~lr~~~~~~f~~~~~ld~~i 464 (1276)
-.+.--|.|--. |++..||.-+-.+|
T Consensus 840 y~itPlleDAlt--DrD~vhRqta~nvI 865 (975)
T COG5181 840 YSITPLLEDALT--DRDPVHRQTAMNVI 865 (975)
T ss_pred HHhhHHHHhhhc--ccchHHHHHHHHHH
Confidence 333334445433 66667776655444
No 51
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=84.08 E-value=81 Score=38.85 Aligned_cols=187 Identities=18% Similarity=0.203 Sum_probs=116.4
Q ss_pred hhhHHHH-HHHHHHhcCcchhhhhHHHHHHHHHhhCCC-CCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHH
Q 039448 761 IQKKAYK-VLSTILRKCDGFLSSRLEELLGLMIEVLPS-CHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEII 838 (1276)
Q Consensus 761 ~QKKAYk-~L~~i~~~~~~f~~~~~~el~~~L~~~~~~-~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiI 838 (1276)
-+|-|.- +...+|+..-+--.+++.+|...+++.+.. -...-|+.-|+.|..+..+-+. ...+-....|--++
T Consensus 303 ~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~-----~l~DstE~ai~K~L 377 (516)
T KOG2956|consen 303 ERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPA-----RLFDSTEIAICKVL 377 (516)
T ss_pred HHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchH-----hhhchHHHHHHHHH
Confidence 3454544 555666643333568899999999998887 5666788888888777654222 12233334444455
Q ss_pred HHhhhhhH-HHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhh-h-hhHHH
Q 039448 839 LALKEANK-RTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFS-D-LVSNV 915 (1276)
Q Consensus 839 L~~Ke~N~-ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~-d-~i~~~ 915 (1276)
=|.|+.+. -.|.++-+++...+...- +.....+.---|+..-| .-++.|..++||+-+-+ + +...+
T Consensus 378 eaa~ds~~~v~~~Aeed~~~~las~~P----------~~~I~~i~~~Ilt~D~~-~~~~~iKm~Tkl~e~l~~EeL~~ll 446 (516)
T KOG2956|consen 378 EAAKDSQDEVMRVAEEDCLTTLASHLP----------LQCIVNISPLILTADEP-RAVAVIKMLTKLFERLSAEELLNLL 446 (516)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHhhCc----------hhHHHHHhhHHhcCcch-HHHHHHHHHHHHHhhcCHHHHHHhh
Confidence 56777664 556666676766655321 22222222112234334 45677779999987763 2 45567
Q ss_pred HHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHH
Q 039448 916 YKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEG 963 (1276)
Q Consensus 916 ~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~ 963 (1276)
.++.|.++---.|.+--|.|.|+=.+=-.|..+=.+.|+|||..+=.+
T Consensus 447 ~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~s 494 (516)
T KOG2956|consen 447 PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSS 494 (516)
T ss_pred hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHH
Confidence 788888888888999999998653333334455569999999877443
No 52
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=83.62 E-value=1.4e+02 Score=40.66 Aligned_cols=223 Identities=16% Similarity=0.221 Sum_probs=136.5
Q ss_pred hHhHHHHHHHHHcCCCChh-hHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcC------cchh-hhh-HHHHHHHHHh
Q 039448 723 MRARLFDLALSLLPGLNAK-EIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKC------DGFL-SSR-LEELLGLMIE 793 (1276)
Q Consensus 723 ~~~~llDL~~alv~~l~~~-~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~------~~f~-~~~-~~el~~~L~~ 793 (1276)
.+..-+.|+..+.+|.+.+ .++.+.-++...++++++.+|--|...|.+++..- +.++ .++ +..|..++.+
T Consensus 439 tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhcc
Confidence 3445688999999998776 56666666777778999999999999999998732 2221 122 2234444444
Q ss_pred hCCCCCc----------cchHHHHHHHHHHHHhc-----cCC------ChHHHHhhhHHHHHHHHHHHh--hhhhHHHHH
Q 039448 794 VLPSCHF----------SAKRHRLDCLYFIIAHV-----SKD------DSEQRRSYILSSFLTEIILAL--KEANKRTRN 850 (1276)
Q Consensus 794 ~~~~~~~----------~ak~~RL~cL~~lv~~l-----~~~------~~~~~~~~~i~~~lpEiIL~~--Ke~N~ktR~ 850 (1276)
+..+..- +-.+.|+.-+...+... +.+ .++. ..+-+...|.+.+..+ ++. .-+|.
T Consensus 519 ~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~-~~~~L~~~V~~~v~sLlsd~~-~~Vkr 596 (1431)
T KOG1240|consen 519 SSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNT-ELQALHHTVEQMVSSLLSDSP-PIVKR 596 (1431)
T ss_pred CccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccch-HHHHHHHHHHHHHHHHHcCCc-hHHHH
Confidence 2111000 01122222222111111 000 1111 1233445556666554 333 34566
Q ss_pred HHHHHHHHHHHHhccCCCCC--------------------------------CcccHHHHHH-HHhhhccCCChhHHHHH
Q 039448 851 RAYDVLVQIGRAFGDEENGG--------------------------------GKENLYQFFN-MVAGGLAGESPHMISAA 897 (1276)
Q Consensus 851 ~A~~lLv~mg~~~~~~~~~~--------------------------------~~~~l~ef~~-mV~aGLaG~tphMiSat 897 (1276)
+=.+-|..+|.-|....+.+ ..-++.||+. ++--||+-..++.|-.+
T Consensus 597 ~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllPLl~Q~ltD~EE~Viv~a 676 (1431)
T KOG1240|consen 597 ALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLPLLQQGLTDGEEAVIVSA 676 (1431)
T ss_pred HHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHHHHHHhccCcchhhHHHH
Confidence 55555777777776532111 1346778875 66679998889999999
Q ss_pred HHHHHHHHHHhhhhhH--HHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcC
Q 039448 898 VKGLARLAYEFSDLVS--NVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSH 949 (1276)
Q Consensus 898 I~ALsrLl~ef~d~i~--~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp 949 (1276)
+-||+.|+-- .++. .+.++++.|.-||..+|-=|..+++||+=.....+.
T Consensus 677 L~~ls~Lik~--~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls 728 (1431)
T KOG1240|consen 677 LGSLSILIKL--GLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLS 728 (1431)
T ss_pred HHHHHHHHHh--cccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhh
Confidence 9999887643 2333 467999999999999999999999999877666655
No 53
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=82.61 E-value=2.3 Score=32.26 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=24.5
Q ss_pred HHHHHHHhcCCchhHHHHHHHHHHHHHHHh
Q 039448 338 FNALKDILASEHEEAIFAATEALKNLINAC 367 (1276)
Q Consensus 338 f~~~~~~l~S~~~~v~~~as~~L~~li~~c 367 (1276)
+..+..++..++++||.+|..||..+...|
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~~ 31 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEHC 31 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhhC
Confidence 344567889999999999999999998776
No 54
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=82.40 E-value=13 Score=36.22 Aligned_cols=90 Identities=18% Similarity=0.245 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhhhhH-HHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHHH
Q 039448 897 AVKGLARLAYEFSDLVS-NVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQF 975 (1276)
Q Consensus 897 tI~ALsrLl~ef~d~i~-~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~hf 975 (1276)
++.||+.+..-.+..+. .+.++++.|+..++.++-.|.-++.--+=-.+.... +.+.+|.++++++|.+-..|....-
T Consensus 6 gli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~-~~~l~~f~~IF~~L~kl~~D~d~~V 84 (97)
T PF12755_consen 6 GLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR-GEILPYFNEIFDALCKLSADPDENV 84 (97)
T ss_pred HHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCchhH
Confidence 33444444333333333 366889999999999999997775443333334444 4455699999999999999987777
Q ss_pred HHHHHHHHHHHHH
Q 039448 976 KSKIKLLLEMLVK 988 (1276)
Q Consensus 976 R~KVr~IlerLIR 988 (1276)
|.-. .+|.||+|
T Consensus 85 r~~a-~~Ld~llk 96 (97)
T PF12755_consen 85 RSAA-ELLDRLLK 96 (97)
T ss_pred HHHH-HHHHHHhc
Confidence 7544 66777765
No 55
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=82.30 E-value=30 Score=40.70 Aligned_cols=166 Identities=14% Similarity=0.147 Sum_probs=106.2
Q ss_pred cccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHhHHHHHHHHHcCCCC
Q 039448 660 GGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLN 739 (1276)
Q Consensus 660 ~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv~~l~ 739 (1276)
....+++...++++..++.+.+-+.--.-.|...... .....+..++||+-...--++
T Consensus 72 H~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~----------------------asi~Vkp~lL~i~e~~~lpL~ 129 (307)
T PF04118_consen 72 HQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSY----------------------ASIQVKPQLLDIYEKYYLPLG 129 (307)
T ss_pred HHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHH----------------------HHHhhHHHHHHHHHHHhcCcc
Confidence 3445566666666666776665555555555555522 112467888999888776677
Q ss_pred hhhHHHHHH---HHhhhhcCCchhhhhHHHHHHHHHHhc-Ccc-hhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHH
Q 039448 740 AKEIDVLFV---AIKPALQDDEGLIQKKAYKVLSTILRK-CDG-FLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFII 814 (1276)
Q Consensus 740 ~~~~~~Lf~---~~~~~l~~~d~~~QKKAYk~L~~i~~~-~~~-f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv 814 (1276)
..-...+.. .+.|-++++..-.+.+.+++|..++.. +.. |.. -++..++. +..-|+.+|.++.
T Consensus 130 ~~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~----~lwl~ii~--------sp~~Rl~al~~l~ 197 (307)
T PF04118_consen 130 PALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQ----CLWLCIIT--------SPSRRLGALNYLL 197 (307)
T ss_pred HHHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHH----HHHHHHhc--------CcchhHHHHHHHH
Confidence 743222222 345566777788999999999999984 222 322 25555543 2456899999999
Q ss_pred HhccCCC------hHHHHhhh----HHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Q 039448 815 AHVSKDD------SEQRRSYI----LSSFLTEIILALKEANKRTRNRAYDVLVQI 859 (1276)
Q Consensus 815 ~~l~~~~------~~~~~~~~----i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~m 859 (1276)
.++++.. ...+...+ ..-++.=...|..|.|.-++..++|+|+.-
T Consensus 198 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~ 252 (307)
T PF04118_consen 198 RRLPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSH 252 (307)
T ss_pred HhCCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHh
Confidence 9998865 22122222 223444455666999999999999999874
No 56
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=81.81 E-value=1.3e+02 Score=36.42 Aligned_cols=85 Identities=18% Similarity=0.323 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCC----CCcccHHHHHHH-Hhhhcc---CCChhHHHHHHHHHHHHHHHhhhhhHH
Q 039448 843 EANKRTRNRAYDVLVQIGRAFGDEENG----GGKENLYQFFNM-VAGGLA---GESPHMISAAVKGLARLAYEFSDLVSN 914 (1276)
Q Consensus 843 e~N~ktR~~A~~lLv~mg~~~~~~~~~----~~~~~l~ef~~m-V~aGLa---G~tphMiSatI~ALsrLl~ef~d~i~~ 914 (1276)
..|-+.+..|+-++..++.+......| +.--++.+||.- |..=|. ...|-..+.+| +.++.|+..++.
T Consensus 266 ~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~ai----k~~~~Fr~~l~~ 341 (370)
T PF08506_consen 266 SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAI----KFLYTFRNQLPK 341 (370)
T ss_dssp TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHH----HHHHHHGGGS-H
T ss_pred cccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHH----HHHHHHHhhCCH
Confidence 456789999999999998876432111 123478999964 444455 34454555544 677889888873
Q ss_pred --HHHhhhHHHHHhccCCH
Q 039448 915 --VYKLLPSTFLLLQRKNR 931 (1276)
Q Consensus 915 --~~~ll~~v~llL~s~~R 931 (1276)
+.++++.+..+|++.+-
T Consensus 342 ~~l~~~~~~l~~~L~~~~~ 360 (370)
T PF08506_consen 342 EQLLQIFPLLVNHLQSSSY 360 (370)
T ss_dssp HHHHHHHHHHHHHTTSS-H
T ss_pred HHHHHHHHHHHHHhCCCCc
Confidence 66889998889987664
No 57
>PTZ00429 beta-adaptin; Provisional
Probab=80.91 E-value=2e+02 Score=38.06 Aligned_cols=241 Identities=8% Similarity=0.076 Sum_probs=130.6
Q ss_pred HHHHHhhcCCCccccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHh
Q 039448 646 SILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRA 725 (1276)
Q Consensus 646 ~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1276)
+.|..+ ..++++.+-.++..|...+...| ..+...++...-+.. .+...+.
T Consensus 301 ~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~~~~~Ff~~~~---------------------------Dp~yIK~ 351 (746)
T PTZ00429 301 TALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRTNLDSFYVRYS---------------------------DPPFVKL 351 (746)
T ss_pred HHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHHHHHhhhcccC---------------------------CcHHHHH
Confidence 444444 34556666666788887777553 333333222111110 1123577
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHH
Q 039448 726 RLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRH 805 (1276)
Q Consensus 726 ~llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~ 805 (1276)
.-|||+..|+ +++++..+++-+..++.+.|..+-+++-|.+..++.........-++-|.+++... ..-...
T Consensus 352 ~KLeIL~~La---ne~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~~~a~~cV~~Ll~ll~~~-----~~~v~e 423 (746)
T PTZ00429 352 EKLRLLLKLV---TPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVDSVAPDCANLLLQIVDRR-----PELLPQ 423 (746)
T ss_pred HHHHHHHHHc---CcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHhcCC-----chhHHH
Confidence 7899998885 56777778887778888888889999999999988743333333333333333211 111112
Q ss_pred HHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhh
Q 039448 806 RLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKE-ANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAG 884 (1276)
Q Consensus 806 RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke-~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~a 884 (1276)
=+-.+..++..-|. ...+..++ +.+ +..+ .+..+|.+-.=+|=+.|+...+ ..+++.-...
T Consensus 424 ~i~vik~IlrkyP~-------~~il~~L~-~~~-~~~~i~e~~AKaaiiWILGEy~~~I~~---------a~~~L~~~i~ 485 (746)
T PTZ00429 424 VVTAAKDIVRKYPE-------LLMLDTLV-TDY-GADEVVEEEAKVSLLWMLGEYCDFIEN---------GKDIIQRFID 485 (746)
T ss_pred HHHHHHHHHHHCcc-------HHHHHHHH-Hhh-cccccccHHHHHHHHHHHHhhHhhHhh---------HHHHHHHHHh
Confidence 23334444332221 11222222 111 1111 2334554434444444443321 2344444446
Q ss_pred hccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHh--ccCCHHHHHHHHHHHHHH
Q 039448 885 GLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLL--QRKNREIIKANLGLLKVL 944 (1276)
Q Consensus 885 GLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL--~s~~REIvKsaLgFvKV~ 944 (1276)
.+.-+++...-+.++|..++.+.+.+.+ ..++..++..+ .+.|.||-.=|.-|-+.+
T Consensus 486 ~f~~E~~~VqlqlLta~vKlfl~~p~~~---~~~l~~vL~~~t~~~~d~DVRDRA~~Y~rLL 544 (746)
T PTZ00429 486 TIMEHEQRVQLAILSAAVKMFLRDPQGM---EPQLNRVLETVTTHSDDPDVRDRAFAYWRLL 544 (746)
T ss_pred hhccCCHHHHHHHHHHHHHHHhcCcHHH---HHHHHHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 7777777788888889999988775432 33445555333 357888888887777754
No 58
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=80.25 E-value=27 Score=37.99 Aligned_cols=124 Identities=20% Similarity=0.298 Sum_probs=88.7
Q ss_pred hhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCCCChHHHHHHHHHHHhhhhcchhh
Q 039448 333 KLPIVFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGPTVIEKICATVESLLDYHYSA 412 (1276)
Q Consensus 333 ~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~~~~~~i~~i~~~~~~~L~~~y~~ 412 (1276)
.||-+|.- |.-....-++-|.++...++..+-.+. +. .+|.+++.-+..+|+-|-..
T Consensus 39 ~Lpif~dG----L~Et~~Py~flA~~g~~dll~~~~~~k-il------------------PvlPqLI~plk~AL~tr~~~ 95 (183)
T PF10274_consen 39 YLPIFFDG----LRETEHPYRFLARQGIKDLLERGGGEK-IL------------------PVLPQLIIPLKRALNTRDPE 95 (183)
T ss_pred HHHHHHhh----hhccCccHHHHHHHHHHHHHHhcchhH-HH------------------HHHHHHHHHHHHHHhCCCHH
Confidence 35555553 333344456888999998887622222 22 56888888999999999999
Q ss_pred hHHHHHHHHHHH---HHhhcccchhhHHHHHHHHHhhhcCC----C-----CCCcchhHHHHHHHHHHHhcChhhHhhc
Q 039448 413 VWDMAFQIVSTM---FDKLGTYSSYFMRGALKNLADMQNLP----D-----EDFPYRKQLHECVGSAVGSMGPETFLCL 479 (1276)
Q Consensus 413 aw~~vL~vl~~l---f~~lg~~~~~~l~~~L~~l~~lr~~~----~-----~~f~~~~~ld~~iGaAi~amGPe~vL~~ 479 (1276)
.-..+|.++..+ -+..|..-.|+++.+|..+.-.++.. | .+-....-+++++..-=+.-||+.+..|
T Consensus 96 V~~~~L~~Lq~Lv~~~~~vG~aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~dA~~nI 174 (183)
T PF10274_consen 96 VFCATLKALQQLVTSSDMVGEALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPDAFINI 174 (183)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChhHHHHH
Confidence 999999999999 88889888899999888887544422 1 1233445677888888888899988764
No 59
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=80.07 E-value=2.7e+02 Score=38.96 Aligned_cols=209 Identities=16% Similarity=0.197 Sum_probs=128.8
Q ss_pred hhHhHHHHHHHHHcCCCChh--hHHHHHHHHhhh---hcCCchhhhhHHHHHHHHHHhcC--cchh----hhhHHHHHHH
Q 039448 722 FMRARLFDLALSLLPGLNAK--EIDVLFVAIKPA---LQDDEGLIQKKAYKVLSTILRKC--DGFL----SSRLEELLGL 790 (1276)
Q Consensus 722 ~~~~~llDL~~alv~~l~~~--~~~~Lf~~~~~~---l~~~d~~~QKKAYk~L~~i~~~~--~~f~----~~~~~el~~~ 790 (1276)
.+.|.+-||+...+|.+|-. .+..+|.++... |.+....--+|=|.+|+.+...+ --|. .+-+.++..+
T Consensus 69 lvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~ 148 (1266)
T KOG1525|consen 69 LVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRT 148 (1266)
T ss_pred HHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHH
Confidence 56788999999999776543 678888866544 34555666678888888887743 1121 1224445555
Q ss_pred HHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Q 039448 791 MIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGG 870 (1276)
Q Consensus 791 L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~ 870 (1276)
+.+.+...++..--.=+..+..++.. .+. -..+++.-++.-+|=.-++.+..+|..|-+++...+.....
T Consensus 149 f~d~~~~~~~~~v~~~~~i~~~li~e---~d~--v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~----- 218 (1266)
T KOG1525|consen 149 FFDLARKGHPKKVFNMLDIAIMLITE---EDT--VQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLED----- 218 (1266)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHh---hcc--chHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhch-----
Confidence 55554322222222222222223221 111 13567777777777777999999999999999999887643
Q ss_pred CcccHHHHHH-HHhhhccCCChhHHHHHHHHHHHHHHHhhhhhH-HHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhc
Q 039448 871 GKENLYQFFN-MVAGGLAGESPHMISAAVKGLARLAYEFSDLVS-NVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKS 948 (1276)
Q Consensus 871 ~~~~l~ef~~-mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~-~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~l 948 (1276)
.+..||+ -++++-+ +.+.-..-+--|+|+-..... .+..++|...--|.+.+-++.+-|+|.+-.....-
T Consensus 219 ---~i~~f~~~~~~~~~s-----~~~~~~~~~he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~ 290 (1266)
T KOG1525|consen 219 ---TIANFLNSCLTEYKS-----RQSSLKIKYHELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDK 290 (1266)
T ss_pred ---hHHHHHHHHHhhccc-----cccchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcc
Confidence 4667765 2333322 444444455556666544333 34566666667788999999999999887766443
No 60
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.78 E-value=2.1e+02 Score=37.55 Aligned_cols=292 Identities=16% Similarity=0.202 Sum_probs=155.0
Q ss_pred HHHHHHHhhccCCHH--HHHHHHHHHHHHHHHHHHHh-----------cccc-ccc-CCCcccccCCCCCCCchhhHhHH
Q 039448 663 LQSTIGDFASIADKE--IVTRLFKRTMHRLLEATQEA-----------GKTK-STR-KSNSMQIDDSSNESSPDFMRARL 727 (1276)
Q Consensus 663 ~~~tI~ay~sI~~~~--~l~~~f~~~~~kL~~~~~~~-----------~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~l 727 (1276)
+..++-||=.|||.. .++..|.+.|+-|.+..+=. ...+ ..+ ..++.-.+++. .+.+
T Consensus 197 vgsAv~AF~evCPerldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~--------~~~~ 268 (968)
T KOG1060|consen 197 VGSAVMAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGR--------SCNL 268 (968)
T ss_pred hhHHHHHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcc--------cccc
Confidence 446788888999875 79999999999886654211 0000 000 00000001110 0000
Q ss_pred HHHH-HHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHH
Q 039448 728 FDLA-LSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHR 806 (1276)
Q Consensus 728 lDL~-~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~R 806 (1276)
-|.. -.=-||.....+..|..-++|.|++.++.+-=-+-++...+.-.. -+..-...|..+|.+. ...+-.=
T Consensus 269 ~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~--~~~~i~kaLvrLLrs~-----~~vqyvv 341 (968)
T KOG1060|consen 269 KDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN--QVTKIAKALVRLLRSN-----REVQYVV 341 (968)
T ss_pred cccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH--HHHHHHHHHHHHHhcC-----Ccchhhh
Confidence 0110 001356667778888888899988877655333333333332211 1111223344444433 4456666
Q ss_pred HHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhc
Q 039448 807 LDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGL 886 (1276)
Q Consensus 807 L~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGL 886 (1276)
|.||..+...-+.... .++.+| -++.+|+ .-+...=.++|..+++. .+...-+.||-+-|
T Consensus 342 L~nIa~~s~~~~~lF~-----P~lKsF----fv~ssDp-~~vk~lKleiLs~La~e------sni~~ILrE~q~YI---- 401 (968)
T KOG1060|consen 342 LQNIATISIKRPTLFE-----PHLKSF----FVRSSDP-TQVKILKLEILSNLANE------SNISEILRELQTYI---- 401 (968)
T ss_pred HHHHHHHHhcchhhhh-----hhhhce----EeecCCH-HHHHHHHHHHHHHHhhh------ccHHHHHHHHHHHH----
Confidence 7777776543332221 122222 1233333 12233334444444431 01123344444433
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhhhhHHH-HHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhH--HHHHHHHHHHH
Q 039448 887 AGESPHMISAAVKGLARLAYEFSDLVSNV-YKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEG--LQIHLASMVEG 963 (1276)
Q Consensus 887 aG~tphMiSatI~ALsrLl~ef~d~i~~~-~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~--l~~~L~~lv~~ 963 (1276)
....-...++||-||+|-.-. +..+ ...+.....+|.+.+--||-.+.--+|.++..=|.+. +-.||..+++.
T Consensus 402 ~s~d~~faa~aV~AiGrCA~~----~~sv~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h~~ii~~La~lldt 477 (968)
T KOG1060|consen 402 KSSDRSFAAAAVKAIGRCASR----IGSVTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEHLEILFQLARLLDT 477 (968)
T ss_pred hcCchhHHHHHHHHHHHHHHh----hCchhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHHHHHHHHHHHHhhh
Confidence 222223899999999975433 2222 2445555678888888889899999999999999888 67788877777
Q ss_pred Hhh--------c-chhhHH-HHHHHHHHHHHHHHHhcCHHH
Q 039448 964 LLK--------W-QDDTKN-QFKSKIKLLLEMLVKKCGLDA 994 (1276)
Q Consensus 964 Ll~--------w-s~d~k~-hfR~KVr~IlerLIRKfG~e~ 994 (1276)
+.. | -.++-. -+| -.-.++.+|++.|.-|.
T Consensus 478 i~vp~ARA~IiWLige~~e~vpr-i~PDVLR~laksFs~E~ 517 (968)
T KOG1060|consen 478 ILVPAARAGIIWLIGEYCEIVPR-IAPDVLRKLAKSFSDEG 517 (968)
T ss_pred hhhhhhhceeeeeehhhhhhcch-hchHHHHHHHHhhcccc
Confidence 643 3 122222 333 45667888888886553
No 61
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.45 E-value=2.1e+02 Score=37.26 Aligned_cols=193 Identities=15% Similarity=0.157 Sum_probs=104.5
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHhccCCC--------------CCccchhHHHHHHHHHHHH-------HhCCCC
Q 039448 155 LYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGT--------------LVLAPASEAITNMFEKFLL-------LAGGSN 213 (1276)
Q Consensus 155 ~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~--------------p~~hpas~~~a~~~~~~l~-------~~~~s~ 213 (1276)
.+.-++.+--++||=|||+|--.+-.|+-..|-. |--...+..|.=+|+-.-. ++.-.-
T Consensus 145 La~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ff 224 (877)
T KOG1059|consen 145 LADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFY 224 (877)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHH
Confidence 6777888888999999999999999988643211 1111122222223322110 000000
Q ss_pred CCcCCCCcchhHHHHHHHHHHhhccCCCchhHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcC-----CCCC-CCHHHH
Q 039448 214 TSADEKPKGAQEVLYVLDALKECLPLMSTKYTAVILKYFKTLLELRQPLVTRRVTDALNVICLH-----PTLE-VSAEAL 287 (1276)
Q Consensus 214 ~~~~~~~~~~~~~lh~L~lLk~~l~~~~~~~~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~-----~~~~-l~~~~~ 287 (1276)
+.-..+..+=.+|.++.|.-.+.|. -+.--+++.+-+..||.- ..-++-.|+|...+-.. ++++ -+..++
T Consensus 225 -kllttSsNNWmLIKiiKLF~aLtpl-EPRLgKKLieplt~li~s--T~AmSLlYECvNTVVa~s~s~g~~d~~asiqLC 300 (877)
T KOG1059|consen 225 -KLLVTSSNNWVLIKLLKLFAALTPL-EPRLGKKLIEPITELMES--TVAMSLLYECVNTVVAVSMSSGMSDHSASIQLC 300 (877)
T ss_pred -HHHhccCCCeehHHHHHHHhhcccc-CchhhhhhhhHHHHHHHh--hHHHHHHHHHHHHheeehhccCCCCcHHHHHHH
Confidence 0000111334556666666666665 555566666666666654 44556678888777543 3222 233456
Q ss_pred HHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Q 039448 288 LDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINREICSTKLPIVFNALKDILASEHEEAIFAATEALKNLI 364 (1276)
Q Consensus 288 ~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li 364 (1276)
++=|..+.+. +.+-+-.+.-+ ||.+++...|..-..|. ..+..||.-..+.||..|-+-|-+++
T Consensus 301 vqKLr~fied------sDqNLKYlgLl---am~KI~ktHp~~Vqa~k----dlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 301 VQKLRIFIED------SDQNLKYLGLL---AMSKILKTHPKAVQAHK----DLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHHHhhhhhc------CCccHHHHHHH---HHHHHhhhCHHHHHHhH----HHHHHHhccCCchhHHHHHHHHHHHh
Confidence 6666665442 22223333211 56666666665444442 34456788888888887777665554
No 62
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=79.25 E-value=1.9e+02 Score=36.81 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=32.2
Q ss_pred HHHhhhhCCCCCCcchhhhHHHHHHHHHHHhcc-CcccHHHHHHHHHHHHHHh
Q 039448 548 SLWSLLPSFCNYPVDTAESFMDLAGVLCSALHE-ENDIRGIICSSLQNLIQQN 599 (1276)
Q Consensus 548 QlWsLLPgFC~~P~D~~~sF~~lA~~L~~~L~~-~~~LR~~Ic~aLr~Li~~n 599 (1276)
|--.-||.||..-.| .-+.+|-+|+++|.. .+.=+..|=++|..|....
T Consensus 78 ~aik~lp~~ck~~~~---~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d 127 (556)
T PF05918_consen 78 QAIKGLPQLCKDNPE---HVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQD 127 (556)
T ss_dssp HHHHHGGGG--T--T----HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-
T ss_pred HHHHhHHHHHHhHHH---HHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC
Confidence 444569999976444 336899999999884 6778888888888887663
No 63
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=78.59 E-value=1.9e+02 Score=36.86 Aligned_cols=226 Identities=14% Similarity=0.167 Sum_probs=110.3
Q ss_pred hHHHHHHhhccCCchhHHHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHH
Q 039448 154 QLYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDAL 233 (1276)
Q Consensus 154 ~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lL 233 (1276)
.+++.+|.||=|.-+.||+.|-.++-.+-+.- --....||+.+.|.|. ..+..++-++=..|
T Consensus 59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~------~~~v~kvaDvL~QlL~------------tdd~~E~~~v~~sL 120 (556)
T PF05918_consen 59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN------PEHVSKVADVLVQLLQ------------TDDPVELDAVKNSL 120 (556)
T ss_dssp HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--------T-HHHHHHHHHHHTT---------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH------HHHHhHHHHHHHHHHh------------cccHHHHHHHHHHH
Confidence 59999999999999999999988776655421 1245677888888762 11345555555555
Q ss_pred HhhccCCCchhHHHHHHHHHHhhc--cCchhHHHHHHHHH-HHHhcCCCCCCCH--HH---HHHHHHHhcccCCCCCCch
Q 039448 234 KECLPLMSTKYTAVILKYFKTLLE--LRQPLVTRRVTDAL-NVICLHPTLEVSA--EA---LLDLLCSLALSVSTNETSA 305 (1276)
Q Consensus 234 k~~l~~~~~~~~~~i~~~ll~Ll~--l~n~~lt~~~~~~~-~~lf~~~~~~l~~--~~---~~~li~aL~~~~~~~~~~~ 305 (1276)
..++-. .+..++...+..+.. -++..+...++.-+ ..|+.-+++.+.+ +. +.+.|..+.. |
T Consensus 121 ~~ll~~---d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~------D-- 189 (556)
T PF05918_consen 121 MSLLKQ---DPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQ------D-- 189 (556)
T ss_dssp HHHHHH----HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCT------T--
T ss_pred HHHHhc---CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHH------h--
Confidence 555443 344444444444442 35666777777666 3444444444442 11 2222222111 0
Q ss_pred hhHHHHHHHHHHHHHHHHhcCHhHHhhhhhHHHHHHHHHhcCCch---hHHHHHHHHHHHHHHHhhchhHHhhhcccccc
Q 039448 306 DAMTFTARLLNVGMIKIYSINREICSTKLPIVFNALKDILASEHE---EAIFAATEALKNLINACIDESLIKQGVDQITN 382 (1276)
Q Consensus 306 ~~l~~~~~vl~~a~~~l~~~~~~~c~~~LP~~f~~~~~~l~S~~~---~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~ 382 (1276)
.... =|..+|++|.+=+- .-...-.+-|..+|.+=. .+....
T Consensus 190 -----------------------VTae----EF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa---~Ld~~f----- 234 (556)
T PF05918_consen 190 -----------------------VTAE----EFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQA---DLDQPF----- 234 (556)
T ss_dssp -------------------------HH----HHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHH---TTTS-------
T ss_pred -----------------------ccHH----HHHHHHHHHHhCccccccCChHHHHHHHHHHHHHh---ccCCCC-----
Confidence 0112 26666666655332 111223344555554311 011111
Q ss_pred cCCCcCCCChHHHHHHHHHHHhhhhc--chhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhhc
Q 039448 383 VNSDARKSGPTVIEKICATVESLLDY--HYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQN 448 (1276)
Q Consensus 383 ~~~~~~~~~~~~i~~i~~~~~~~L~~--~y~~aw~~vL~vl~~lf~~lg~~~~~~l~~~L~~l~~lr~ 448 (1276)
..+++..|.+++.++...|-+ +..++-..+=-++.-+|-+++.-....=..+|+.++++-.
T Consensus 235 -----~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~ 297 (556)
T PF05918_consen 235 -----DPSDPESIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSP 297 (556)
T ss_dssp ------SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHT
T ss_pred -----CCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcC
Confidence 124567888888888766543 2222333333333344444444444456678999999864
No 64
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=78.20 E-value=87 Score=37.08 Aligned_cols=136 Identities=21% Similarity=0.233 Sum_probs=76.0
Q ss_pred CCchhHHHHHHHHHHHHhccCCCCCcch-hhHHHHHHhhccCC--chhHHHHHHHHHHHHHhccCCCCCccchhHHHHHH
Q 039448 125 VTAGAVASGLTSLSRLLTGRGRVNWSDV-SQLYGVVLAFMTDS--RLKVRRQSHLCVREILLSLQGTLVLAPASEAITNM 201 (1276)
Q Consensus 125 ~~~~~lRs~i~CL~~LL~aqd~~~W~~~-~~~~~~LL~f~~d~--RPKVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~ 201 (1276)
.+.--+.|.+..|+.++..-+...=+.. .+.++.++.+.+++ -|+||+.|.+++..++...+. . .+..+.+-
T Consensus 174 ~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~---~--l~~~li~~ 248 (339)
T PF12074_consen 174 ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPE---L--LSKSLISG 248 (339)
T ss_pred CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChH---H--HHHHHHHH
Confidence 3445678888888888776544333333 56899999999999 899999999999999974211 1 33333333
Q ss_pred HHHHHHHhC-CCCC--CcCCCCcchhHHHHHHHHHHhhccCCCchhHHHHHHHHHHhhcc-CchhHHHH
Q 039448 202 FEKFLLLAG-GSNT--SADEKPKGAQEVLYVLDALKECLPLMSTKYTAVILKYFKTLLEL-RQPLVTRR 266 (1276)
Q Consensus 202 ~~~~l~~~~-~s~~--~~~~~~~~~~~~lh~L~lLk~~l~~~~~~~~~~i~~~ll~Ll~l-~n~~lt~~ 266 (1276)
+-+.+.... +.+. ....+.+.-..++.++.+........+..... ....+..|+-+ ++|++...
T Consensus 249 l~~~l~~~~~~~~~s~~~~~~~~~~~~v~~ai~~~~~~~~~~~~~~~~-~~~~~~~lLvla~hp~i~~~ 316 (339)
T PF12074_consen 249 LWKWLSSSETGDKESSAENSSDKNLSPVLSAICLAPADLSISDGSSAD-LESQLVSLLVLAHHPLIPRK 316 (339)
T ss_pred HHHHHHhccccccccccccccccccccchHHHHhhhHhhhccccchhH-HHHHHHHHHHHhCcHhhccc
Confidence 333332111 0000 01112223455666666655544432222222 55566666555 45555444
No 65
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=77.63 E-value=9.3 Score=36.75 Aligned_cols=108 Identities=22% Similarity=0.206 Sum_probs=70.8
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC-CCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhh
Q 039448 833 FLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENG-GGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDL 911 (1276)
Q Consensus 833 ~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~-~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~ 911 (1276)
+++.++=.+++.|...|..|...|..|+......... -..+.+..++.+ |.-..+..+-.++.+|+.|.+.....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~----l~~~~~~v~~~a~~~L~~l~~~~~~~ 83 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQL----LKSEDEEVVKAALWALRNLAAGPEDN 83 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHH----HhCCCHHHHHHHHHHHHHHccCcHHH
Confidence 3444444557788899999999999987631000000 001333334333 34457889999999999999877544
Q ss_pred hHHHH--HhhhHHHHHhccCCHHHHHHHHHHHHHH
Q 039448 912 VSNVY--KLLPSTFLLLQRKNREIIKANLGLLKVL 944 (1276)
Q Consensus 912 i~~~~--~ll~~v~llL~s~~REIvKsaLgFvKV~ 944 (1276)
...+. .+++.+.-+|.+.+.++.+.++.++.-+
T Consensus 84 ~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 84 KLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred HHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33322 4577777788888999999998887644
No 66
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.36 E-value=61 Score=38.57 Aligned_cols=117 Identities=13% Similarity=0.047 Sum_probs=69.4
Q ss_pred HHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHhccC
Q 039448 788 LGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEI-ILALKEANKRTRNRAYDVLVQIGRAFGDE 866 (1276)
Q Consensus 788 ~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEi-IL~~Ke~N~ktR~~A~~lLv~mg~~~~~~ 866 (1276)
++.+.....+.+++.-..|..||.-|-.++-..+ +-.+|+..=.-.. +.-.+..+...|..|-.+|-...+
T Consensus 82 ~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iD---nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~q----- 153 (342)
T KOG2160|consen 82 MSMIPIVILNSSSVDLEDKEDALDNLEELVEDID---NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQ----- 153 (342)
T ss_pred HHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhh---hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHh-----
Confidence 3333444455677778888898876654332222 1234444222222 234578888999999998877665
Q ss_pred CCCCCcccHHH--HHHHHhhhccCCC-hhHHHHHHHHHHHHHHHhhhhh
Q 039448 867 ENGGGKENLYQ--FFNMVAGGLAGES-PHMISAAVKGLARLAYEFSDLV 912 (1276)
Q Consensus 867 ~~~~~~~~l~e--f~~mV~aGLaG~t-phMiSatI~ALsrLl~ef~d~i 912 (1276)
.||-.++.+.+ |+..++.-|+.++ -|-++.+.-|++.|+-+|..-.
T Consensus 154 NNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~ 202 (342)
T KOG2160|consen 154 NNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQ 202 (342)
T ss_pred cCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHH
Confidence 23333333322 3345555555443 5666999999999999985433
No 67
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=75.54 E-value=2.2e+02 Score=35.50 Aligned_cols=237 Identities=14% Similarity=0.154 Sum_probs=131.7
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHhhhhcCCch-hhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchH
Q 039448 726 RLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEG-LIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKR 804 (1276)
Q Consensus 726 ~llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d~-~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~ 804 (1276)
.+-+|.-++-.| +-+.+..++..++..+..+.+ -.+.-||++|.++++.............+..+.+ .....--.
T Consensus 10 a~~~l~~~i~~~-~~~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~---~~~~~d~~ 85 (464)
T PF11864_consen 10 AAEELCESIQKY-PLSSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISD---PSNDDDFD 85 (464)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhc---CCCchhHH
Confidence 344455554444 448899999999988876544 4688999999999997655222222334444422 23344567
Q ss_pred HHHHHHHHHHHhccCCCh-HHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC-CCCCcccHHHHHHHH
Q 039448 805 HRLDCLYFIIAHVSKDDS-EQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEE-NGGGKENLYQFFNMV 882 (1276)
Q Consensus 805 ~RL~cL~~lv~~l~~~~~-~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~-~~~~~~~l~ef~~mV 882 (1276)
.||..|..|-.+.-+-.. +.+...|+...++++.-.....-.+.+.. ..+. -.+.. .+.....+.++|.++
T Consensus 86 ~~l~aL~~LT~~Grdi~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~------~~~~-~~~~~~~~~~~~~l~~ll~~l 158 (464)
T PF11864_consen 86 LRLEALIALTDNGRDIDFFEYEIGPFLLSWLEPSYQAARSARRKAKKS------SSSK-SKGLSNLDNEESNLSDLLQFL 158 (464)
T ss_pred HHHHHHHHHHcCCcCchhcccchHHHHHHHHHHHHHHHHHHHHHhhcc------cccc-ccccccccchhhhHHHHHHHH
Confidence 899999888654322111 22355677777777762222221111111 0000 00000 011345677777766
Q ss_pred hhhccCCChhHHHHHHHHHHHHHHHhhhhh-HHHHHhhhHHHH-HhccCCHHHHHHHHHHHHHHHh--hcChhHHHHHHH
Q 039448 883 AGGLAGESPHMISAAVKGLARLAYEFSDLV-SNVYKLLPSTFL-LLQRKNREIIKANLGLLKVLVA--KSHAEGLQIHLA 958 (1276)
Q Consensus 883 ~aGLaG~tphMiSatI~ALsrLl~ef~d~i-~~~~~ll~~v~l-lL~s~~REIvKsaLgFvKV~v~--~lp~~~l~~~L~ 958 (1276)
.-- +=|.|+-.- ..+..++..+|. +..+.+.+.++++|.++-.+|. .+|.+.+.+-+.
T Consensus 159 ~nv------------------iKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~i~ 220 (464)
T PF11864_consen 159 VNV------------------IKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPCIE 220 (464)
T ss_pred HHH------------------HhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHHHH
Confidence 522 223332222 135566666654 5677888888999999988887 799888876665
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHH-HhcCHHHHHh
Q 039448 959 SMVEGLLKWQDDTKNQFKSKIKLLLEMLV-KKCGLDAVKA 997 (1276)
Q Consensus 959 ~lv~~Ll~ws~d~k~hfR~KVr~IlerLI-RKfG~e~V~~ 997 (1276)
.|-.. .+.. .+....-+++.-|+ -..|...|..
T Consensus 221 vLCsi-~~~~-----~l~~~~w~~m~nL~~S~~g~~~i~~ 254 (464)
T PF11864_consen 221 VLCSI-VNSV-----SLCKPSWRTMRNLLKSHLGHSAIRT 254 (464)
T ss_pred HHhhH-hccc-----ccchhHHHHHHHHHcCccHHHHHHH
Confidence 44322 2222 22223344555555 2345555544
No 68
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=74.44 E-value=42 Score=36.52 Aligned_cols=144 Identities=19% Similarity=0.262 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhccCC----CCCcc----h----hhHHHHHH-hhccCCchhHHHHHHHHHHHHHhcc----------C-C
Q 039448 132 SGLTSLSRLLTGRGR----VNWSD----V----SQLYGVVL-AFMTDSRLKVRRQSHLCVREILLSL----------Q-G 187 (1276)
Q Consensus 132 s~i~CL~~LL~aqd~----~~W~~----~----~~~~~~LL-~f~~d~RPKVRK~Aq~av~~IL~~~----------~-~ 187 (1276)
+++.||+.+...-|. .-|.. . .+.=..|+ -+.-|+-||||-+|-.++..+|... . +
T Consensus 5 ~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~ 84 (182)
T PF13251_consen 5 AALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGP 84 (182)
T ss_pred HHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCC
Confidence 688999999998555 46753 1 11111222 2334999999999999999999852 1 1
Q ss_pred CCCccchhHHHHHHHHHHH---HHhCCCCCCcCCCCcchhHHHHHHHHHHhhccC--CCchhHHHHHHHHHHhhccCchh
Q 039448 188 TLVLAPASEAITNMFEKFL---LLAGGSNTSADEKPKGAQEVLYVLDALKECLPL--MSTKYTAVILKYFKTLLELRQPL 262 (1276)
Q Consensus 188 ~p~~hpas~~~a~~~~~~l---~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~~--~~~~~~~~i~~~ll~Ll~l~n~~ 262 (1276)
...+.|-|...+....+.= ..+- . .+.....-+.++-+|..|-...|+ ++......+...+..++.-.++-
T Consensus 85 ~~sFtslS~tLa~~i~~lH~~Ll~~L-~---~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~ 160 (182)
T PF13251_consen 85 SGSFTSLSSTLASMIMELHRGLLLAL-Q---AEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPN 160 (182)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHH-h---cccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCc
Confidence 1255677777776644322 1000 0 011111345677777777777776 57888888999999999999999
Q ss_pred HHHHHHHHHHHHhcCCC
Q 039448 263 VTRRVTDALNVICLHPT 279 (1276)
Q Consensus 263 lt~~~~~~~~~lf~~~~ 279 (1276)
++..++-+|.+|+...+
T Consensus 161 v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 161 VRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999986553
No 69
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=72.26 E-value=39 Score=43.42 Aligned_cols=167 Identities=19% Similarity=0.257 Sum_probs=108.4
Q ss_pred HhhhHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHH--HHHhhhccCCChhHHHHHHHHHH
Q 039448 826 RSYILSSFLTEIIL-ALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFF--NMVAGGLAGESPHMISAAVKGLA 902 (1276)
Q Consensus 826 ~~~~i~~~lpEiIL-~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~--~mV~aGLaG~tphMiSatI~ALs 902 (1276)
...|+.+++.---. -...-|.+.-+-|+-+|-.|-. +... +.+-+++.++| ..|+..+-|..-..+|=+---++
T Consensus 409 iLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s-~itk--~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is 485 (970)
T COG5656 409 ILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKS-FITK--MSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFIS 485 (970)
T ss_pred HHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHH-Hhcc--CchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHH
Confidence 45566666522111 1234688888899999999888 5442 34567777777 46777777776667787777888
Q ss_pred HHHHHhhhhhHHHHHhhhHHHHHhccCCHHH-HHHHHHHHHHHHhh-cChhHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 039448 903 RLAYEFSDLVSNVYKLLPSTFLLLQRKNREI-IKANLGLLKVLVAK-SHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIK 980 (1276)
Q Consensus 903 rLl~ef~d~i~~~~~ll~~v~llL~s~~REI-vKsaLgFvKV~v~~-lp~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr 980 (1276)
++=-+|+|.. .+.++++.|.-+|.+|.+.| +.|||.. +-++.. =-.+.+..|+|.+|++|+..+++.--. -+-
T Consensus 486 ~~eeDfkd~~-ill~aye~t~ncl~nn~lpv~ieAalAl-q~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD---~LS 560 (970)
T COG5656 486 TIEEDFKDNG-ILLEAYENTHNCLKNNHLPVMIEAALAL-QFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEID---PLS 560 (970)
T ss_pred HHHHhcccch-HHHHHHHHHHHHHhcCCcchhhhHHHHH-HHHHhchhhhHHHHhhhhHHHHHHHHhcccccch---HHH
Confidence 8866666643 24577888888888888887 5554432 222222 225788999999999999998753111 244
Q ss_pred HHHHHHHHhcCHHHHHhcCCH
Q 039448 981 LLLEMLVKKCGLDAVKAVMPE 1001 (1276)
Q Consensus 981 ~IlerLIRKfG~e~V~~~~Pe 1001 (1276)
-.+|-+|.+|. |.+..+.||
T Consensus 561 ~vMe~fVe~fs-eELspfa~e 580 (970)
T COG5656 561 MVMESFVEYFS-EELSPFAPE 580 (970)
T ss_pred HHHHHHHHHhH-HhhchhHHH
Confidence 55666776663 334444443
No 70
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=70.54 E-value=89 Score=36.37 Aligned_cols=161 Identities=20% Similarity=0.238 Sum_probs=99.1
Q ss_pred hhhHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 039448 827 SYILSSFLTEIIL-ALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLA 905 (1276)
Q Consensus 827 ~~~i~~~lpEiIL-~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl 905 (1276)
...+..++..+|+ +.+..+...|+.|..+|=-.|=. + ...-.+||..+...+....+-+...++.|+.-++
T Consensus 21 ~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Ll--d------~~~a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll 92 (298)
T PF12719_consen 21 NISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLL--D------KELAKEHLPLFLQALQKDDEEVKITALKALFDLL 92 (298)
T ss_pred cchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh--C------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3466788888884 66888889999999988665432 1 1223344444444443235667888888999999
Q ss_pred HHhhh-hhHH---------HHHhhhHHHHHhccCCHHHHH-HHHHHHHHHHhhcChhHHHHHHHHHHHH-Hhhc-chhhH
Q 039448 906 YEFSD-LVSN---------VYKLLPSTFLLLQRKNREIIK-ANLGLLKVLVAKSHAEGLQIHLASMVEG-LLKW-QDDTK 972 (1276)
Q Consensus 906 ~ef~d-~i~~---------~~~ll~~v~llL~s~~REIvK-saLgFvKV~v~~lp~~~l~~~L~~lv~~-Ll~w-s~d~k 972 (1276)
-.|+- .++. ...++.-..-+|.+.+.|+-- ++-||.|.+....-.+ -+.++.. ++.| +..+.
T Consensus 93 ~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~-----~~~vL~~Lll~yF~p~t~ 167 (298)
T PF12719_consen 93 LTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD-----PPKVLSRLLLLYFNPSTE 167 (298)
T ss_pred HHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc-----HHHHHHHHHHHHcCcccC
Confidence 88842 2221 234555556688888878643 4899999998775444 1223333 2334 33333
Q ss_pred HHHHHHHHHHHHHHHHhcCHHHHHhcCCHHHHHHHH
Q 039448 973 NQFKSKIKLLLEMLVKKCGLDAVKAVMPEEHMKLLK 1008 (1276)
Q Consensus 973 ~hfR~KVr~IlerLIRKfG~e~V~~~~Pee~~KlL~ 1008 (1276)
... ++|++|.-++.-|.+ ...+|+..+.
T Consensus 168 ~~~--~LrQ~L~~Ffp~y~~------s~~~~Q~~l~ 195 (298)
T PF12719_consen 168 DNQ--RLRQCLSVFFPVYAS------SSPENQERLA 195 (298)
T ss_pred CcH--HHHHHHHHHHHHHHc------CCHHHHHHHH
Confidence 323 588999988886643 4455555443
No 71
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=70.35 E-value=3.4e+02 Score=36.02 Aligned_cols=323 Identities=15% Similarity=0.134 Sum_probs=185.9
Q ss_pred HHHhhHhHHHHHHHhhcCCCccccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCC
Q 039448 637 LKSSARELLSILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSN 716 (1276)
Q Consensus 637 L~~~A~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~ 716 (1276)
.-.|+-.++|.|.|+-+....+.|....+++..-+.-.+++.....|.-++.+|.....-
T Consensus 153 ~~~~~~~ll~~le~l~~~eet~vr~k~ve~l~~v~~~~~~~~~~~~lv~l~~~l~~~d~~-------------------- 212 (759)
T KOG0211|consen 153 GPEYAHMLLPPLELLATVEETGVREKAVESLLKVAVGLPKEKLREHLVPLLKRLATGDWF-------------------- 212 (759)
T ss_pred chhHHHHhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHccchhhh--------------------
Confidence 346788999999999887666677778888888888889998877777766665332100
Q ss_pred CCCchhhHhHHHHHHHHHcCCCChhhHHH-HHHHHhhhhcCCchhhhhHHHHHHHHHHhcC-cchhh-hhHHHHHHHHHh
Q 039448 717 ESSPDFMRARLFDLALSLLPGLNAKEIDV-LFVAIKPALQDDEGLIQKKAYKVLSTILRKC-DGFLS-SRLEELLGLMIE 793 (1276)
Q Consensus 717 ~~~~~~~~~~llDL~~alv~~l~~~~~~~-Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~-~~f~~-~~~~el~~~L~~ 793 (1276)
. .|..-=-+...+.+.++++.+.. +-..+....++..+-+-+=+=+-+..+...- ...+. ..+....++..+
T Consensus 213 --~---sr~sacglf~~~~~~~~~~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~D 287 (759)
T KOG0211|consen 213 --Q---SRLSACGLFGKLYVSLPDDAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRD 287 (759)
T ss_pred --h---cchhhhhhhHHhccCCChHHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhc
Confidence 0 01111124445566666544332 1122233333333322221111111111100 00111 111222222222
Q ss_pred hCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC-----
Q 039448 794 VLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEEN----- 868 (1276)
Q Consensus 794 ~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~----- 868 (1276)
.- --.|+..+.+++..+.-.+.. .+....+.++.+-+..|.+.+.|...-+....+...+..+..
T Consensus 288 dq-------dsVr~~a~~~~~~l~~l~~~~---~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~ 357 (759)
T KOG0211|consen 288 DQ-------DSVREAAVESLVSLLDLLDDD---DDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLV 357 (759)
T ss_pred ch-------hhHHHHHHHHHHHHHHhcCCc---hhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccch
Confidence 22 345666666655332111111 156777888888899999999999999999888887765100
Q ss_pred ------------------CCCcccHHHHHH--------------HHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHH
Q 039448 869 ------------------GGGKENLYQFFN--------------MVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVY 916 (1276)
Q Consensus 869 ------------------~~~~~~l~ef~~--------------mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~ 916 (1276)
......+.+|+. -+-.-..-..+|+.+|...-+.-+.=.+. .-.++.
T Consensus 358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~-k~~ti~ 436 (759)
T KOG0211|consen 358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP-KERTIS 436 (759)
T ss_pred hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC-cCcCcc
Confidence 001112222222 00011122335555544433332222221 111244
Q ss_pred HhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCHHHH
Q 039448 917 KLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDAV 995 (1276)
Q Consensus 917 ~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~e~V 995 (1276)
.+++-....+....++|.-..+-++.....+++...+..+...++++|.....+...+.|..+..-+-.+..-+|.+..
T Consensus 437 ~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~ 515 (759)
T KOG0211|consen 437 ELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFF 515 (759)
T ss_pred ccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHh
Confidence 5555556688889999998899899999999999999999999999999988888888888888888888888884443
No 72
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=69.68 E-value=30 Score=37.66 Aligned_cols=140 Identities=19% Similarity=0.220 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHH------------HHHhhhhhHHHHHHHHHHHHHHHHHhcc----CC
Q 039448 804 RHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEI------------ILALKEANKRTRNRAYDVLVQIGRAFGD----EE 867 (1276)
Q Consensus 804 ~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEi------------IL~~Ke~N~ktR~~A~~lLv~mg~~~~~----~~ 867 (1276)
-.=|.||..++....+.. ...+++.++|+. -..++|.|.|+|.+|-.+|..|=+.-.. .+
T Consensus 4 ~~Al~~L~al~k~~~~r~----l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae 79 (182)
T PF13251_consen 4 QAALQCLQALAKSTDKRS----LFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAE 79 (182)
T ss_pred HHHHHHHHHHHHhcCCce----eHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHH
Confidence 344678888877744432 357899999988 2233899999999999999998652211 11
Q ss_pred -CCCCc-----------ccHHHHHHHHhhhccC-CChhHHHHHHHHHHHHHHHh--hhh-hHHHHHhhhHHHHHhccCCH
Q 039448 868 -NGGGK-----------ENLYQFFNMVAGGLAG-ESPHMISAAVKGLARLAYEF--SDL-VSNVYKLLPSTFLLLQRKNR 931 (1276)
Q Consensus 868 -~~~~~-----------~~l~ef~~mV~aGLaG-~tphMiSatI~ALsrLl~ef--~d~-i~~~~~ll~~v~llL~s~~R 931 (1276)
..+.. ..|.+.=..+.-.|.. .++......+.+|+-|+... ..+ .+.+..++..|..++.+++.
T Consensus 80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~ 159 (182)
T PF13251_consen 80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP 159 (182)
T ss_pred hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence 11111 1122222222222222 23444445555666555433 111 11244555555666666666
Q ss_pred HHHHHHHHHHHHHHhh
Q 039448 932 EIIKANLGLLKVLVAK 947 (1276)
Q Consensus 932 EIvKsaLgFvKV~v~~ 947 (1276)
+|.-++|.-+-.++..
T Consensus 160 ~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 160 NVRVAALSCLGALLSV 175 (182)
T ss_pred cHHHHHHHHHHHHHcC
Confidence 6665555554444433
No 73
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=69.17 E-value=37 Score=36.50 Aligned_cols=102 Identities=21% Similarity=0.243 Sum_probs=67.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHH-HHHhhhH
Q 039448 843 EANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSN-VYKLLPS 921 (1276)
Q Consensus 843 e~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~-~~~ll~~ 921 (1276)
|-.-..|++||++|-.+-..+.+ .-.+.+|+..|.+||.- .....--+-.-|+||+.-..+.+.. +.++.+.
T Consensus 38 DDGLelRK~ayE~lytlLd~~~~------~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~ 110 (169)
T PF08623_consen 38 DDGLELRKAAYECLYTLLDTCLS------RIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEP 110 (169)
T ss_dssp EGGGHHHHHHHHHHHHHHHSTCS------SS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHH------hCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34568999999999998775543 35699999999999987 4667777777788887766443332 2222222
Q ss_pred HHHHh----c--------cCCHHHHHHHHHHHHHHHhhcChh
Q 039448 922 TFLLL----Q--------RKNREIIKANLGLLKVLVAKSHAE 951 (1276)
Q Consensus 922 v~llL----~--------s~~REIvKsaLgFvKV~v~~lp~~ 951 (1276)
.-..| . .+..|..||+|+.+..+=..+|..
T Consensus 111 l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~ 152 (169)
T PF08623_consen 111 LRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGA 152 (169)
T ss_dssp HHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-
T ss_pred HHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 21111 1 245788999999998876666643
No 74
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=68.91 E-value=3.6 Score=35.51 Aligned_cols=37 Identities=27% Similarity=0.432 Sum_probs=26.9
Q ss_pred CCcchhhhHHHHHHHHHHHhcc-----CcccHHHHHHHHHHHHHHh
Q 039448 559 YPVDTAESFMDLAGVLCSALHE-----ENDIRGIICSSLQNLIQQN 599 (1276)
Q Consensus 559 ~P~D~~~sF~~lA~~L~~~L~~-----~~~LR~~Ic~aLr~Li~~n 599 (1276)
||.+++ +|...|..+|.+ .|+||..+|+||-.|-+++
T Consensus 9 Yp~~~~----~Fp~~L~~lL~~~~~~L~p~lR~~lv~aLiLLRnK~ 50 (52)
T PF08158_consen 9 YPKETK----DFPQELIDLLRNHHTVLDPDLRMKLVKALILLRNKD 50 (52)
T ss_pred cHHHHH----HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHccC
Confidence 666553 566666666664 4899999999999886553
No 75
>KOG2256 consensus Predicted protein involved in nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis]
Probab=68.82 E-value=3.5e+02 Score=34.94 Aligned_cols=81 Identities=23% Similarity=0.319 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHH-HhcCHH---HHHhc--------
Q 039448 931 REIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLV-KKCGLD---AVKAV-------- 998 (1276)
Q Consensus 931 REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLI-RKfG~e---~V~~~-------- 998 (1276)
.|+|--++-=+|-++..+-...+..++.++++.| +....| |.+|.- -+||.. +|+++
T Consensus 534 PELv~p~i~rLk~f~k~skn~~~~r~v~~li~kl-----e~ns~F------V~~kR~~v~F~pnD~~~V~afe~~~~~~~ 602 (661)
T KOG2256|consen 534 PELVLPVIMRLKSFLKESKNGNYKRVVKQLIEKL-----EENSKF------VLEKRNKVKFSPNDQQAVSAFEQDLDWNK 602 (661)
T ss_pred hhhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-----HHHHHH------HHHHHhcCccCCCcHHHHHHHHHHHHccC
Confidence 4554444445566666667777777788888777 222222 222221 234421 22222
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhhccC
Q 039448 999 MPEEHMKLLKNIRKIKERKERKLATK 1024 (1276)
Q Consensus 999 ~Pee~~KlL~nIrK~~~R~kRkk~~~ 1024 (1276)
+| .......+||.++++.|...+.
T Consensus 603 TP--l~~yy~~~rk~~~~k~r~~~e~ 626 (661)
T KOG2256|consen 603 TP--LGQYYSSWRKVREEKNRLAVES 626 (661)
T ss_pred Cc--HHHHHHHHHHHHHHHHHHHhhh
Confidence 34 3456778888888776664443
No 76
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=68.59 E-value=99 Score=33.60 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=42.5
Q ss_pred hhHhHHHHHHHHHcCC--C-ChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHH
Q 039448 722 FMRARLFDLALSLLPG--L-NAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEE 786 (1276)
Q Consensus 722 ~~~~~llDL~~alv~~--l-~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~e 786 (1276)
..+..-++++...+.+ + |.+.+.. +....-++++.+.++||++|.++.+.+.+++..+..+
T Consensus 23 ~vr~~Al~~l~~il~qGLvnP~~cvp~----lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~~~~ 86 (187)
T PF12830_consen 23 SVRLAALQVLELILRQGLVNPKQCVPT----LIALETSPNPSIRSRAYQLLKELHEKHESLVESRYSE 86 (187)
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHhH----hhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4677777877766633 3 3343432 2233356789999999999999999998887776544
No 77
>PRK09687 putative lyase; Provisional
Probab=67.70 E-value=2.4e+02 Score=32.71 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=87.0
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHh
Q 039448 156 YGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKE 235 (1276)
Q Consensus 156 ~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~ 235 (1276)
...|+.+--|+.+.||..|+.++..+ . + +.+...+.+.+. ++....-..++.+|+-|..
T Consensus 25 ~~~L~~~L~d~d~~vR~~A~~aL~~~-~----~-------~~~~~~l~~ll~---------~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 25 DDELFRLLDDHNSLKRISSIRVLQLR-G----G-------QDVFRLAIELCS---------SKNPIERDIGADILSQLGM 83 (280)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhc-C----c-------chHHHHHHHHHh---------CCCHHHHHHHHHHHHhcCC
Confidence 34555666899999999999998643 1 1 112222222221 0111122345555555443
Q ss_pred hccCCCchhHHHHHHHHHHh-hccCchhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCCCchhhHHHHHHH
Q 039448 236 CLPLMSTKYTAVILKYFKTL-LELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTARL 314 (1276)
Q Consensus 236 ~l~~~~~~~~~~i~~~ll~L-l~l~n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~v 314 (1276)
+......+.+.+..+ ++=.++.|...+..+|-.+.... ....+..+..++..+++. +.. +-..
T Consensus 84 -----~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~-~~~~~~a~~~l~~~~~D~----~~~---VR~~--- 147 (280)
T PRK09687 84 -----AKRCQDNVFNILNNLALEDKSACVRASAINATGHRCKKN-PLYSPKIVEQSQITAFDK----STN---VRFA--- 147 (280)
T ss_pred -----CccchHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc-cccchHHHHHHHHHhhCC----CHH---HHHH---
Confidence 111123455555544 55578888889999987664322 222334444454554432 111 1111
Q ss_pred HHHHHHHHHhcCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 039448 315 LNVGMIKIYSINREICSTKLPIVFNALKDILASEHEEAIFAATEALKNL 363 (1276)
Q Consensus 315 l~~a~~~l~~~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~l 363 (1276)
+...|..+. =|..+..+..+|..+...|+..|..+|-.+
T Consensus 148 ---a~~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 148 ---VAFALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFALNSN 186 (280)
T ss_pred ---HHHHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcC
Confidence 122222221 256677778888888889999999888765
No 78
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=65.69 E-value=41 Score=36.11 Aligned_cols=104 Identities=21% Similarity=0.321 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHH-HHHHHHHhhcch
Q 039448 891 PHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHL-ASMVEGLLKWQD 969 (1276)
Q Consensus 891 phMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L-~~lv~~Ll~ws~ 969 (1276)
|-+.+.+|.+|+=|.+.|..+++ .+++.++..|.+.+..|-+.+|--+.-++.. .---++.++ ..++..| .
T Consensus 2 ~~vR~n~i~~l~DL~~r~~~~ve---~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l----~ 73 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYPNLVE---PYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLL----V 73 (178)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHH---hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHH----c
Confidence 56789999999999999987665 4567778899999999999987665554432 112223333 5555544 5
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCHHHHHhcCCHH
Q 039448 970 DTKNQFKSKIKLLLEMLVKKCGLDAVKAVMPEE 1002 (1276)
Q Consensus 970 d~k~hfR~KVr~IlerLIRKfG~e~V~~~~Pee 1002 (1276)
|.-...|.-.+.+|..+.++-+-+.+...+|+=
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~ 106 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNIIYNNFPEL 106 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 666788999999999999998888888888864
No 79
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=64.63 E-value=2e+02 Score=36.93 Aligned_cols=237 Identities=14% Similarity=0.122 Sum_probs=107.7
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHhHHHHHHHHHcCCCChhhHHH
Q 039448 666 TIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLNAKEIDV 745 (1276)
Q Consensus 666 tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv~~l~~~~~~~ 745 (1276)
.+-..++.++.+.+..+|..+...- .....+..++|.+... -..+++..
T Consensus 351 ~Lv~~lr~l~~~~L~~l~~~~~~~~----------------------------~~~~~r~~~lDal~~a---GT~~av~~ 399 (618)
T PF01347_consen 351 RLVRLLRTLSYEDLEELYKQLKSKS----------------------------KKEQARKIFLDALPQA---GTNPAVKF 399 (618)
T ss_dssp HHHHHHTTS-HHHHHHHHHHHTTS-------------------------------HHHHHHHHHHHHHH----SHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhhc----------------------------cHHHHHHHHHHHHHHc---CCHHHHHH
Confidence 3444567778888888775542110 0123566677776542 12334444
Q ss_pred HHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCC----
Q 039448 746 LFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDD---- 821 (1276)
Q Consensus 746 Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~---- 821 (1276)
+.+.| .. ...-...|..+|..+...-..--.+.++++.+++......-..--+..=+-++..++...|...
T Consensus 400 i~~~I----~~-~~~~~~ea~~~l~~l~~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~ 474 (618)
T PF01347_consen 400 IKDLI----KS-KKLTDDEAAQLLASLPFHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAE 474 (618)
T ss_dssp HHHHH----HT-T-S-HHHHHHHHHHHHHT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----
T ss_pred HHHHH----Hc-CCCCHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccc
Confidence 44433 22 1222344666666555411011112233333332211110011122223345566666666552
Q ss_pred -----hHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHH
Q 039448 822 -----SEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISA 896 (1276)
Q Consensus 822 -----~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSa 896 (1276)
...-...+++.+..+.--+....++..+-.+..-|-.||+ +..+..+...+.+.- +.+++...+
T Consensus 475 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~-~~~~~~R~~ 543 (618)
T PF01347_consen 475 FCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKE-EVPHFIRVA 543 (618)
T ss_dssp ------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS--S-HHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhcc-ccchHHHHH
Confidence 1011235666666665544455555555555554444443 345555555444333 557888999
Q ss_pred HHHHHHHHHHHhhhhhH-HHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHH
Q 039448 897 AVKGLARLAYEFSDLVS-NVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHL 957 (1276)
Q Consensus 897 tI~ALsrLl~ef~d~i~-~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L 957 (1276)
+|.||.++...+.+.+. .+..++.+. +.+-||.=||. -+++.+-|...+..++
T Consensus 544 Ai~Alr~~~~~~~~~v~~~l~~I~~n~-----~e~~EvRiaA~---~~lm~~~P~~~~l~~i 597 (618)
T PF01347_consen 544 AIQALRRLAKHCPEKVREILLPIFMNT-----TEDPEVRIAAY---LILMRCNPSPSVLQRI 597 (618)
T ss_dssp HHHTTTTGGGT-HHHHHHHHHHHHH-T-----TS-HHHHHHHH---HHHHHT---HHHHHHH
T ss_pred HHHHHHHHhhcCcHHHHHHHHHHhcCC-----CCChhHHHHHH---HHHHhcCCCHHHHHHH
Confidence 99999988666654443 344554432 56778766663 3344455665554443
No 80
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=63.84 E-value=10 Score=28.73 Aligned_cols=28 Identities=21% Similarity=0.422 Sum_probs=23.4
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHh
Q 039448 156 YGVVLAFMTDSRLKVRRQSHLCVREILL 183 (1276)
Q Consensus 156 ~~~LL~f~~d~RPKVRK~Aq~av~~IL~ 183 (1276)
+..++++.-|+-|+||.+|-.++..+.+
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4567888889999999999999998875
No 81
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=63.55 E-value=4.4e+02 Score=34.28 Aligned_cols=78 Identities=10% Similarity=0.197 Sum_probs=53.9
Q ss_pred ccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 039448 800 FSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFF 879 (1276)
Q Consensus 800 ~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~ 879 (1276)
...+..|+..|.++...+..... ...-..++|-++++.+|.|.--|+.....+..++-++... .-...+-+||
T Consensus 341 ~~Dr~iR~~LL~~i~~~i~~Lt~----~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~---~Ln~Ellr~~ 413 (690)
T KOG1243|consen 341 SPDRQIRLLLLQYIEKYIDHLTK----QILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR---NLNGELLRYL 413 (690)
T ss_pred CcchHHHHHHHHhHHHHhhhcCH----HhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh---hhcHHHHHHH
Confidence 45588899988887654333221 2455678899999999999999999988888887766432 1234456666
Q ss_pred HHHhh
Q 039448 880 NMVAG 884 (1276)
Q Consensus 880 ~mV~a 884 (1276)
.-+-+
T Consensus 414 ar~q~ 418 (690)
T KOG1243|consen 414 ARLQP 418 (690)
T ss_pred HhhCc
Confidence 54444
No 82
>PF11277 Med24_N: Mediator complex subunit 24 N-terminal; InterPro: IPR021429 This subunit of the Mediator complex appears to be conserved only from insects to humans. It is essential for correct retinal development in fish. Subunit composition of the mediator contributes to the control of differentiation in the vertebrate CNS as there are divergent functions of the mediator subunits Crsp34/Med27, Trap100/Med24, and Crsp150/Med14 [].
Probab=63.37 E-value=5.4e+02 Score=35.19 Aligned_cols=100 Identities=16% Similarity=0.208 Sum_probs=54.6
Q ss_pred chhHHHHHHHhhhhccCcC------hHHHhhhhhhHHHHHHHHhhhc-----------CCCchhHHHHHHHHHHHHhc--
Q 039448 83 SHIIGSLSTILSLLLPKIS------VAVLKKKGDFLTDLVVRVVRLS-----------SVTAGAVASGLTSLSRLLTG-- 143 (1276)
Q Consensus 83 ~~~~~a~lyLL~lv~p~vP------~~vLr~kf~~~~~~l~~~l~~~-----------~~~~~~lRs~i~CL~~LL~a-- 143 (1276)
++-+.+++-+|...++.+. ..+|-.-.-.++.-|+.++... .+..-.+.-++.||+.++-.
T Consensus 91 ~~c~~~ll~~l~~~~~~~sC~gk~EE~iL~~Alls~v~WLL~~~~~~l~~~~e~~~~~~~~e~~l~~~~~~L~~i~~s~f 170 (990)
T PF11277_consen 91 PHCINALLELLESIIDGLSCRGKAEECILCRALLSLVHWLLQCYEYSLEKLRENNELSAEQEEILEKCCQRLEKILESTF 170 (990)
T ss_pred hHHHHHHHHHHHHhcCCcccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHcCch
Confidence 3555666666666665554 3443333333333333333221 12345666667777766544
Q ss_pred ----------cCCCCCcchhhHHHHHHhhccC-----CchhHHHHHHHHHHHHH
Q 039448 144 ----------RGRVNWSDVSQLYGVVLAFMTD-----SRLKVRRQSHLCVREIL 182 (1276)
Q Consensus 144 ----------qd~~~W~~~~~~~~~LL~f~~d-----~RPKVRK~Aq~av~~IL 182 (1276)
-|...|+.+.+.+..|=++... +.+.+|..++++..-+-
T Consensus 171 ~~aLL~Iak~ee~e~w~~v~q~~~~l~~~l~~~~~~~~~~tL~~~l~kl~sl~~ 224 (990)
T PF11277_consen 171 LRALLYIAKLEEPESWNEVEQKCAKLKNSLSNSGFVKSNVTLRDQLEKLASLEK 224 (990)
T ss_pred HHHHHHHhhhccHhHHHHHHHHHHHHHHHhcccccccCchHHHHHHHHHHHHHh
Confidence 4667888777665555554444 57778888887754433
No 83
>PF05536 Neurochondrin: Neurochondrin
Probab=62.98 E-value=73 Score=40.51 Aligned_cols=165 Identities=16% Similarity=0.180 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhhccCch-hHHHHHHHHHHHHhcCCCCC---CCHHHHHHHHHHhcccCCCCCCch-hhHHHHHHHHHHHH
Q 039448 245 TAVILKYFKTLLELRQP-LVTRRVTDALNVICLHPTLE---VSAEALLDLLCSLALSVSTNETSA-DAMTFTARLLNVGM 319 (1276)
Q Consensus 245 ~~~i~~~ll~Ll~l~n~-~lt~~~~~~~~~lf~~~~~~---l~~~~~~~li~aL~~~~~~~~~~~-~~l~~~~~vl~~a~ 319 (1276)
+-...+.++.++.-+.. -++.-|+++|.++..++... +..+.+ ..|+..++. .+... ..+..|..++..
T Consensus 96 ~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v-~~L~ei~~~---~~~~~E~Al~lL~~Lls~-- 169 (543)
T PF05536_consen 96 MVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAV-PALCEIIPN---QSFQMEIALNLLLNLLSR-- 169 (543)
T ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCH-HHHHHHHHh---CcchHHHHHHHHHHHHHh--
Confidence 33445555555555444 88999999999998655421 111112 222222222 11111 123333232222
Q ss_pred HHHHhcCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCCCChHHHHHHH
Q 039448 320 IKIYSINREICSTKLPIVFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGPTVIEKIC 399 (1276)
Q Consensus 320 ~~l~~~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~~~~~~i~~i~ 399 (1276)
............+..++..+...+.+.+....+..-+-|..++..| +.. +. ....++.++..|.
T Consensus 170 --~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~-~~~----~~---------~~~~~~~W~~~l~ 233 (543)
T PF05536_consen 170 --LGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS-PIL----PL---------ESPPSPKWLSDLR 233 (543)
T ss_pred --cchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC-Ccc----cc---------ccCChhhhHHHHH
Confidence 1111112344556667777888888888888888888888888887 211 00 0123457788888
Q ss_pred HHHHhhhhcchhhhH-HHHHHHHHHHHHhhccc
Q 039448 400 ATVESLLDYHYSAVW-DMAFQIVSTMFDKLGTY 431 (1276)
Q Consensus 400 ~~~~~~L~~~y~~aw-~~vL~vl~~lf~~lg~~ 431 (1276)
..+...|+.|-.... ...+.+.++|.+.+|..
T Consensus 234 ~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~ 266 (543)
T PF05536_consen 234 KGLRDILQSRLTPSQRDPALNLAASLLDLLGPE 266 (543)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChH
Confidence 888888877766544 48899999999999854
No 84
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=60.50 E-value=4.6e+02 Score=38.25 Aligned_cols=62 Identities=18% Similarity=0.322 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhcCHhHHhhhhhHHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHhhchhHH
Q 039448 308 MTFTARLLNVGMIKIYSINREICSTKLPIVFNALKDILASEH--EEAIFAATEALKNLINACIDESLI 373 (1276)
Q Consensus 308 l~~~~~vl~~a~~~l~~~~~~~c~~~LP~~f~~~~~~l~S~~--~~v~~~as~~L~~li~~ci~~~~~ 373 (1276)
++.|.-|+-.-+..+..++.+.-..++|.+|..+++++..++ ++|+ .+|+.++..||.|-++
T Consensus 1714 i~a~~pv~v~il~~~~~l~~~~f~~~~~~~y~l~~~l~~~e~~~~e~r----~~l~~~~~~rvg~~~~ 1777 (1780)
T PLN03076 1714 LAARAPLVVATLQAVCGLGDSSFEKNLVRFFPLLAGLISCEHGSNEVQ----VALSDMLSSWVGPVLL 1777 (1780)
T ss_pred HHhcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccCCCHHHH----HHHHHHHHHHhhhhHh
Confidence 555667777788889999999999999999999999998754 6776 4578888888877544
No 85
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=59.57 E-value=16 Score=31.10 Aligned_cols=42 Identities=29% Similarity=0.278 Sum_probs=35.9
Q ss_pred HHhcCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHH
Q 039448 322 IYSINREICSTKLPIVFNALKDILASEHEEAIFAATEALKNL 363 (1276)
Q Consensus 322 l~~~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~l 363 (1276)
++...+.....++|.++..+..+|.++++.||..|..+|.+|
T Consensus 14 l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 14 LAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp TTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 456667778889999999999999999999999999998653
No 86
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=58.53 E-value=40 Score=32.27 Aligned_cols=107 Identities=15% Similarity=0.223 Sum_probs=61.5
Q ss_pred HHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHH-HHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHh
Q 039448 749 AIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLE-ELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRS 827 (1276)
Q Consensus 749 ~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~-el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~ 827 (1276)
.+...+.+.+..+..-|...|..++..........++ ++...+.+.+.. +..+-|..|+..|- .+.....+ ...
T Consensus 11 ~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~~v~~~a~~~L~-~l~~~~~~-~~~ 85 (120)
T cd00020 11 ALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS---EDEEVVKAALWALR-NLAAGPED-NKL 85 (120)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC---CCHHHHHHHHHHHH-HHccCcHH-HHH
Confidence 3445556667788889999999998753222111111 333334443332 22344445555443 33333322 122
Q ss_pred hhHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHH
Q 039448 828 YILSS-FLTEIILALKEANKRTRNRAYDVLVQIG 860 (1276)
Q Consensus 828 ~~i~~-~lpEiIL~~Ke~N~ktR~~A~~lLv~mg 860 (1276)
.++.. +++-++=...+.+.++|+.|..+|..++
T Consensus 86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33333 6777777778889999999999998775
No 87
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=58.47 E-value=32 Score=31.60 Aligned_cols=78 Identities=22% Similarity=0.369 Sum_probs=51.0
Q ss_pred HHHHHHh-hhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhH
Q 039448 835 TEIILAL-KEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVS 913 (1276)
Q Consensus 835 pEiIL~~-Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~ 913 (1276)
|..+=.+ ++.|...|..|..+|-.++. + +.+..+...+..+.|.+..+++.||+++ +
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~~----------~----~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~---- 59 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELGD----------P----EAIPALIELLKDEDPMVRRAAARALGRI----G---- 59 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCTH----------H----HHHHHHHHHHTSSSHHHHHHHHHHHHCC----H----
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCC----------H----hHHHHHHHHHcCCCHHHHHHHHHHHHHh----C----
Confidence 3444445 78899999999988885543 2 3344555555777899999999999976 1
Q ss_pred HHHHhhhHHHHHhccCCHHHHH
Q 039448 914 NVYKLLPSTFLLLQRKNREIIK 935 (1276)
Q Consensus 914 ~~~~ll~~v~llL~s~~REIvK 935 (1276)
-.+.++.+.-+|.+.+-++|+
T Consensus 60 -~~~~~~~L~~~l~~~~~~~vr 80 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDDDEVVR 80 (88)
T ss_dssp -HHHTHHHHHHHHTC-SSHHHH
T ss_pred -CHHHHHHHHHHHcCCCcHHHH
Confidence 233445555566665545543
No 88
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=57.01 E-value=95 Score=31.03 Aligned_cols=74 Identities=19% Similarity=0.178 Sum_probs=59.3
Q ss_pred hhHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHH
Q 039448 828 YILSSFLTEIILALK-EANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAY 906 (1276)
Q Consensus 828 ~~i~~~lpEiIL~~K-e~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ 906 (1276)
++++.++|-+.-+.+ -.+...|-+||-++..++.+..= .++.++.++.-|..+....+. ...++++|..|..
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L-----~~~~l~~l~~~i~~~~~~~~~--~~~~l~~L~~l~q 74 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPL-----SDEVLNALMESILKNWTQETV--QRQALICLIVLCQ 74 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCC-----cHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHH
Confidence 578899999999998 77889999999999999997632 356788888777777666543 6788999998776
Q ss_pred Hh
Q 039448 907 EF 908 (1276)
Q Consensus 907 ef 908 (1276)
.+
T Consensus 75 ~q 76 (121)
T PF12397_consen 75 SQ 76 (121)
T ss_pred cc
Confidence 65
No 89
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=55.21 E-value=56 Score=39.07 Aligned_cols=112 Identities=16% Similarity=0.270 Sum_probs=71.3
Q ss_pred ccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccC-------CHHHHHHHHHHHHHHH
Q 039448 873 ENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRK-------NREIIKANLGLLKVLV 945 (1276)
Q Consensus 873 ~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~-------~REIvKsaLgFvKV~v 945 (1276)
.-++.||..|..-+.|++.+...++...|.. -+-+.+|+|-.+.|+.+. |-++....+.+++.++
T Consensus 174 ~Elq~yf~~It~a~~~~~~~~r~~aL~sL~t--------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl 245 (343)
T cd08050 174 KELQLYFEEITEALVGSNEEKRREALQSLRT--------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALL 245 (343)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHhcc--------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHh
Confidence 4588999999988888888777776655430 011334444433333322 5666677777777665
Q ss_pred hhcChhHHHHHHHHHHHHHhhcc--------hhhHHHH--HHHHHHHHHHHHHhcCHH
Q 039448 946 AKSHAEGLQIHLASMVEGLLKWQ--------DDTKNQF--KSKIKLLLEMLVKKCGLD 993 (1276)
Q Consensus 946 ~~lp~~~l~~~L~~lv~~Ll~ws--------~d~k~hf--R~KVr~IlerLIRKfG~e 993 (1276)
.- |.=.|.+||..||+.++++- .+..+|+ |..-=.++..+++|||..
T Consensus 246 ~N-~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~ 302 (343)
T cd08050 246 DN-PNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTS 302 (343)
T ss_pred cC-CCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCC
Confidence 43 33456788877888777542 1123444 656778999999999865
No 90
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=54.44 E-value=6.9e+02 Score=33.62 Aligned_cols=170 Identities=12% Similarity=0.123 Sum_probs=110.8
Q ss_pred HHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHhHHHHHHHHHcCCCChhhHH
Q 039448 665 STIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLNAKEID 744 (1276)
Q Consensus 665 ~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv~~l~~~~~~ 744 (1276)
.+++++...+...++..+.-+++.-|...... ..+..-..+|+-++.++.+-|+...
T Consensus 510 ~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~----------------------~s~evl~llmE~Ls~vv~~dpef~a- 566 (1005)
T KOG2274|consen 510 SAVRAFCGYCKVKVLLSLQPMILDGLLQLASK----------------------SSDEVLVLLMEALSSVVKLDPEFAA- 566 (1005)
T ss_pred HHHHHHHhccCceeccccchHHHHHHHHHccc----------------------ccHHHHHHHHHHHHHHhccChhhhh-
Confidence 68888888888888888888887777665410 2234566788888888887665421
Q ss_pred HHHHHHhhh-----h-cCCchhhhhHHHHHHHHHHh--cCcchhh-hhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHH
Q 039448 745 VLFVAIKPA-----L-QDDEGLIQKKAYKVLSTILR--KCDGFLS-SRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIA 815 (1276)
Q Consensus 745 ~Lf~~~~~~-----l-~~~d~~~QKKAYk~L~~i~~--~~~~f~~-~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~ 815 (1276)
..=+.+.|. + .++|+.+=--+--+++++|. .|.+-+. .-+..|..+|.......+++--..-+..|..+|.
T Consensus 567 s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr 646 (1005)
T KOG2274|consen 567 SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLR 646 (1005)
T ss_pred hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHh
Confidence 111222222 1 24566665566777888887 3444333 3466777777777666666667777788888887
Q ss_pred hccCCChHHHHhhhHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHH
Q 039448 816 HVSKDDSEQRRSYILSSFLTEIILAL-KEANKRTRNRAYDVLVQIGR 861 (1276)
Q Consensus 816 ~l~~~~~~~~~~~~i~~~lpEiIL~~-Ke~N~ktR~~A~~lLv~mg~ 861 (1276)
.-|+... +.++.-..|=|+=|| ...--.+=.+|-++|...-.
T Consensus 647 ~tp~pL~----~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is 689 (1005)
T KOG2274|consen 647 NTPSPLP----NLLICYAFPAVAKITLHSDDHETLQNATECLRALIS 689 (1005)
T ss_pred cCCCCcc----HHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence 7666543 567777777777777 33334567777777776544
No 91
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=54.00 E-value=4.9e+02 Score=31.77 Aligned_cols=142 Identities=20% Similarity=0.250 Sum_probs=73.1
Q ss_pred CCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhh-----CCCCCccchHHHHHHH
Q 039448 736 PGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEV-----LPSCHFSAKRHRLDCL 810 (1276)
Q Consensus 736 ~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~-----~~~~~~~ak~~RL~cL 810 (1276)
|.+..+.+++-++ ..++.|.++-..|-|-|...|.. .++..-.+.+.++|... ...+...----|-+|+
T Consensus 56 p~la~~a~da~~d----~~ed~d~~ir~qaik~lp~fc~~--d~~~rv~d~l~qLLnk~sl~~Lf~~~~~~D~~irek~l 129 (460)
T KOG2213|consen 56 PSLADEAIDAQLD----LCEDDDVGIRRQAIKGLPLFCKG--DALSRVNDVLVQLLNKASLTGLFGQIEVGDEQIREKVL 129 (460)
T ss_pred chhhhHHHHhhhc----cccccchhhHHHHHhccchhccC--chhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 4444455554444 34577889999999999999985 56666556666665522 1122233455666777
Q ss_pred HHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccC
Q 039448 811 YFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAG 888 (1276)
Q Consensus 811 ~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG 888 (1276)
..|...+.....|.-..+.=.-++-||=-++-++-.. .|.+...+-..+...++-.+++.|.++.... +|+++
T Consensus 130 ~fi~tKl~~l~~e~L~kevE~~iv~eikkal~dVtge----ef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~-e~~a~ 202 (460)
T KOG2213|consen 130 KFIRTKLITLKGEVLTKEVERHIVDEIKKALEDVTGE----EFTLFMDILASLKSLQTKAGEARLQELAEEQ-EGLAD 202 (460)
T ss_pred HHHHHHhhcccHHHhhhHHHHHHHHHHHHHHHhccHH----HHHHHHHHHHhhhcccCCCCHHHHHHHHHHH-hhhhc
Confidence 7776554443332111233333444444444444333 2222222212222122233456666666544 45555
No 92
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=53.56 E-value=3.8e+02 Score=36.38 Aligned_cols=164 Identities=15% Similarity=0.131 Sum_probs=99.1
Q ss_pred hhhHhHHHHHHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCc
Q 039448 721 DFMRARLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHF 800 (1276)
Q Consensus 721 ~~~~~~llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~ 800 (1276)
+..|...++.+..+-... .. .+...|.++|+.++..|.+.|..+-. .+.|. ..+ ..
T Consensus 698 ~~VR~~A~~aL~~~~~~~----~~----~l~~~L~D~d~~VR~~Av~aL~~~~~---------~~~l~----~~l---~D 753 (897)
T PRK13800 698 PVVRAAALDVLRALRAGD----AA----LFAAALGDPDHRVRIEAVRALVSVDD---------VESVA----GAA---TD 753 (897)
T ss_pred HHHHHHHHHHHHhhccCC----HH----HHHHHhcCCCHHHHHHHHHHHhcccC---------cHHHH----HHh---cC
Confidence 367888888877665332 11 23457889999999999998887521 11122 222 23
Q ss_pred cchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHH
Q 039448 801 SAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFN 880 (1276)
Q Consensus 801 ~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~ 880 (1276)
+...-|..+...|-.. .... ...++-++-.++|.+...|..|...|-.+|. +..+ ..
T Consensus 754 ~~~~VR~~aa~aL~~~-~~~~---------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----------~~~~---~~ 810 (897)
T PRK13800 754 ENREVRIAVAKGLATL-GAGG---------APAGDAVRALTGDPDPLVRAAALAALAELGC----------PPDD---VA 810 (897)
T ss_pred CCHHHHHHHHHHHHHh-cccc---------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----------cchh---HH
Confidence 3355666666655322 1111 1113334455688999999999988877643 1112 22
Q ss_pred HHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHH
Q 039448 881 MVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGL 940 (1276)
Q Consensus 881 mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgF 940 (1276)
.+...|....+....+++.||+++=- .+-++...-+|.+.++.|.++++.-
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l~~---------~~a~~~L~~~L~D~~~~VR~~A~~a 861 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGAAA---------DVAVPALVEALTDPHLDVRKAAVLA 861 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhccc---------cchHHHHHHHhcCCCHHHHHHHHHH
Confidence 34556777778888999999986411 1233444667889999998886543
No 93
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=53.01 E-value=7.3e+02 Score=33.48 Aligned_cols=57 Identities=25% Similarity=0.291 Sum_probs=45.1
Q ss_pred HhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHH
Q 039448 917 KLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQ 974 (1276)
Q Consensus 917 ~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~h 974 (1276)
.++|-.+--|.-.+-+|--+++.-++..+...+ .++-.|+.++||.++..+.+++|.
T Consensus 909 ~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~-tL~t~~~~Tlvp~lLsls~~~~n~ 965 (1030)
T KOG1967|consen 909 MLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE-TLQTEHLSTLVPYLLSLSSDNDNN 965 (1030)
T ss_pred hHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc-ccchHHHhHHHHHHHhcCCCCCcc
Confidence 444444445666888887789999999887776 677889999999999999999865
No 94
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=50.69 E-value=2e+02 Score=30.57 Aligned_cols=117 Identities=17% Similarity=0.134 Sum_probs=82.2
Q ss_pred cccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHh-hhhh-HHHHHhhhHHHHHhccCCHHHH-HHH---HHHHHHHH
Q 039448 872 KENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEF-SDLV-SNVYKLLPSTFLLLQRKNREII-KAN---LGLLKVLV 945 (1276)
Q Consensus 872 ~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef-~d~i-~~~~~ll~~v~llL~s~~REIv-Ksa---LgFvKV~v 945 (1276)
...++.+.+-|..-|.+.++.-.-+++.-+..++-+. .+.+ ..-..++..+.-.|++.+...+ +++ |..+=..+
T Consensus 20 ~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~ 99 (165)
T PF08167_consen 20 KSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLI 99 (165)
T ss_pred HHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 5678889999988898888877777776666666554 4444 4566778887778888554443 333 44455555
Q ss_pred hhcCh---hHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhc
Q 039448 946 AKSHA---EGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKC 990 (1276)
Q Consensus 946 ~~lp~---~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKf 990 (1276)
...|. +..-|+||.+++.++.-.++ ......+=..|..||+.|
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ 145 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHH 145 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHC
Confidence 56664 77889999999999988775 455666666777777765
No 95
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.88 E-value=8e+02 Score=32.75 Aligned_cols=387 Identities=15% Similarity=0.176 Sum_probs=0.0
Q ss_pred CCCcchhHHHHHHHHHHhhccCCCchhHHHHHHHHHHhhc------cCchhHHHHHHHHHHHHh----cCCCCCCCHHHH
Q 039448 218 EKPKGAQEVLYVLDALKECLPLMSTKYTAVILKYFKTLLE------LRQPLVTRRVTDALNVIC----LHPTLEVSAEAL 287 (1276)
Q Consensus 218 ~~~~~~~~~lh~L~lLk~~l~~~~~~~~~~i~~~ll~Ll~------l~n~~lt~~~~~~~~~lf----~~~~~~l~~~~~ 287 (1276)
+|+..+|+-=-+..|+|.+.-.|-+|...-+...+-++|+ ..|=-=--++...+.++- .......+...+
T Consensus 371 EGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~l 450 (960)
T KOG1992|consen 371 EGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNEL 450 (960)
T ss_pred ccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecccc
Q ss_pred HHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh
Q 039448 288 LDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINREICSTKLPIVFNALKDILASEHEEAIFAATEALKNLINAC 367 (1276)
Q Consensus 288 ~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~c 367 (1276)
.+++.=+.--.-+.-.+++...... +...|..........+.-.+|=..|..+..+|.+++.-|.+-|+-|+..++.-|
T Consensus 451 vdv~~Ff~~~ilp~L~s~~vn~~pi-lka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vr 529 (960)
T KOG1992|consen 451 VDVVDFFANQILPDLLSPNVNEFPI-LKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVR 529 (960)
T ss_pred ccHHHHHHHHhhHHhccCccccccc-hhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccc
Q ss_pred hchhHHhhhcccccccCCCcCCCChHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhh-
Q 039448 368 IDESLIKQGVDQITNVNSDARKSGPTVIEKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADM- 446 (1276)
Q Consensus 368 i~~~~~~~~v~~~~~~~~~~~~~~~~~i~~i~~~~~~~L~~~y~~aw~~vL~vl~~lf~~lg~~~~~~l~~~L~~l~~l- 446 (1276)
=+......+-..+ ...+..+..-+=+.++..-..--.++...+-.+|..+....-|++..++..|.++
T Consensus 530 e~~~~~if~~~~i-----------ap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv 598 (960)
T KOG1992|consen 530 ENSNAKIFGAEDI-----------APFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIV 598 (960)
T ss_pred cCccccccchhhc-----------chHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHH
Q ss_pred ----hcCCCCCCcchhHHHHHHHHHHHhcChhhHhhcccCccccCcccccccchhhhhhhccCCCC---hHhHHHHHHHH
Q 039448 447 ----QNLPDEDFPYRKQLHECVGSAVGSMGPETFLCLLPLKLEASDLSEVNVWLFPILKQYIIGAR---LNFFMEKLLGM 519 (1276)
Q Consensus 447 ----r~~~~~~f~~~~~ld~~iGaAi~amGPe~vL~~lPLnl~~~~~~~~RaWLLPlLr~~i~~t~---L~fF~~~~lPL 519 (1276)
++ -.+-.+...+=++||..|+. +.... ++-|.+.++|.
T Consensus 599 ~~v~KN--Ps~P~fnHYLFEsi~~li~~---------------------------------t~~~~~~~vs~~e~aL~p~ 643 (960)
T KOG1992|consen 599 EEVSKN--PSNPQFNHYLFESIGLLIRK---------------------------------TCKANPSAVSSLEEALFPV 643 (960)
T ss_pred HHHhcC--CCCchhHHHHHHHHHHHHHH---------------------------------HhccCchHHHHHHHHHHHH
Q ss_pred HHHHHHHhHHhhhhccchhhhhHHHHHHHHHhhhhCCCCCCcchhhhHHH-HHHHHHHHhccCcccHHHHHHHHHHHHHH
Q 039448 520 AKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLPSFCNYPVDTAESFMD-LAGVLCSALHEENDIRGIICSSLQNLIQQ 598 (1276)
Q Consensus 520 a~~~~~k~~~~~~~~~~~~ak~~~tL~~QlWsLLPgFC~~P~D~~~sF~~-lA~~L~~~L~~~~~LR~~Ic~aLr~Li~~ 598 (1276)
.+...+- ....|--.+.||-+.|-.-|.- ++.++|.. |-..|...|-++...-+...+=|+.++.+
T Consensus 644 fq~Il~e-----------DI~EfiPYvfQlla~lve~~~~--~ip~~~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~ 710 (960)
T KOG1992|consen 644 FQTILSE-----------DIQEFIPYVFQLLAVLVEHSSG--TIPDSYSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKT 710 (960)
T ss_pred HHHHHHH-----------HHHHHHHHHHHHHHHHHHhcCC--CCchhHHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhc
Q ss_pred hhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHHHHHHHhhcCCCccccccHH-HHHHHhhccCCHH
Q 039448 599 NKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLSILSRIFLESAKDEGGCLQ-STIGDFASIADKE 677 (1276)
Q Consensus 599 n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~vLfNvy~~~~~~~~~~~~-~tI~ay~sI~~~~ 677 (1276)
+-....++ .+..-.|.++=-+-.+...|..|+.+ ++|-.+..-..-.
T Consensus 711 g~~~~~~~--------------------------------~~l~~iLGifqkLiaSka~Dh~GF~LLn~i~~~~~~~~~~ 758 (960)
T KOG1992|consen 711 GSQIVEAA--------------------------------DKLSGILGIFQKLIASKANDHHGFYLLNTIIESIPPNELA 758 (960)
T ss_pred Cchhhccc--------------------------------ccchhHHHHHHHHhcCcccchhHHHHHHHHHhcCCHhhhh
Q ss_pred -HHHHHHHHHHHHHHHHHHH
Q 039448 678 -IVTRLFKRTMHRLLEATQE 696 (1276)
Q Consensus 678 -~l~~~f~~~~~kL~~~~~~ 696 (1276)
.+..+|.-..+++....++
T Consensus 759 py~k~i~~llf~RlqnskT~ 778 (960)
T KOG1992|consen 759 PYMKQIFGLLFQRLQNSKTE 778 (960)
T ss_pred HHHHHHHHHHHHHHhccCcH
No 96
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=48.12 E-value=7.9e+02 Score=32.46 Aligned_cols=323 Identities=15% Similarity=0.136 Sum_probs=162.3
Q ss_pred hHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhccCCCCCcchhhHHHHHHhhccCCchhHHHHHHHHHHHHHhc----c-
Q 039448 111 FLTDLVVRVVRLSSVTAGAVASGLTSLSRLLTGRGRVNWSDVSQLYGVVLAFMTDSRLKVRRQSHLCVREILLS----L- 185 (1276)
Q Consensus 111 ~~~~~l~~~l~~~~~~~~~lRs~i~CL~~LL~aqd~~~W~~~~~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~----~- 185 (1276)
.+...++|+|-+++-+.--=-=.++.+-.+|-.-|--.-.++...+-.+=.+.+|+-++.|---++-|.+.-+- +
T Consensus 398 ~lfnqiLpllMs~tLeDqerhllVkvidriLyklDdlvrpYVhkILvViepllided~yar~egreIisnLakaaGla~m 477 (1172)
T KOG0213|consen 398 PLFNQILPLLMSPTLEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKAAGLATM 477 (1172)
T ss_pred HHHHHHHHHHcCccccchhhhhHHHHHHHHHHhhcccchhceeeeEEEeecceecchHHHhhchHHHHHHHHHHhhhHHH
Confidence 35666777777663221111113466667776667666566554444455678999999999888888765441 1
Q ss_pred ---CCCC--Cccc--------hhHHHHHHH-----HHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhccCCCchhHHH
Q 039448 186 ---QGTL--VLAP--------ASEAITNMF-----EKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECLPLMSTKYTAV 247 (1276)
Q Consensus 186 ---~~~p--~~hp--------as~~~a~~~-----~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~~~~~~~~~~ 247 (1276)
+.+- ...| |...+|+.+ .-+|...-+|+++- .+--+-|.+.+-+-.++.+---.+++.
T Consensus 478 istmrpDidn~deYVRnttarafavvasalgip~llpfLkavc~SkkSw----qaRhTgIkivqqIail~Gcsvlphl~~ 553 (1172)
T KOG0213|consen 478 ISTMRPDIDNKDEYVRNTTARAFAVVASALGIPALLPFLKAVCGSKKSW----QARHTGIKIVQQIAILSGCSVLPHLKP 553 (1172)
T ss_pred HHhhcCCcccccHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccccch----hhhchhhHHHHHHHHHhcchhhhhhHH
Confidence 1111 1112 222222221 11112222333211 122355666666666666655566777
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCH
Q 039448 248 ILKYFKTLLELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINR 327 (1276)
Q Consensus 248 i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~ 327 (1276)
+.+.+...+.=.++.|..-+-.++.+||..... .-.+..-.+++-|..-... | -+-.++...+ |+..+.-+-.
T Consensus 554 lv~ii~~gl~De~qkVR~itAlalsalaeaa~P-ygie~fDsVlkpLwkgir~-h-rgk~laafLk----Aigyliplmd 626 (1172)
T KOG0213|consen 554 LVKIIEHGLKDEQQKVRTITALALSALAEAATP-YGIEQFDSVLKPLWKGIRQ-H-RGKELAAFLK----AIGYLIPLMD 626 (1172)
T ss_pred HHHHHHHhhcccchhhhhHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHH-c-cChHHHHHHH----HHhhcccccc
Confidence 777777777778898888888888888865431 3334444555555443221 1 2223444434 5555554432
Q ss_pred hHHhhh-hhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCCCC-hHHHHHHHHHH---
Q 039448 328 EICSTK-LPIVFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSG-PTVIEKICATV--- 402 (1276)
Q Consensus 328 ~~c~~~-LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~~~-~~~i~~i~~~~--- 402 (1276)
...... --++.-++..-+.|+.++.-... |+ ++..|.+. .|+++ .+- .+++..++..+
T Consensus 627 ~eya~yyTrevmlil~rEf~sPDeemkkiv---LK-Vv~qcc~t----~Gv~~---------~y~r~dilp~ff~~fw~r 689 (1172)
T KOG0213|consen 627 AEYASYYTREVMLILIREFGSPDEEMKKIV---LK-VVKQCCAT----DGVEP---------AYIRFDILPEFFFSFWGR 689 (1172)
T ss_pred HHHHHHhHHHHHHHHHHhhCCChHHHHHHH---HH-HHHHHhcc----cCCCH---------HHHhhhhhHHHHhhhhhh
Confidence 222232 23344455667788887765432 22 44455432 12111 000 12222222222
Q ss_pred HhhhhcchhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhhcCCCCCCcchhHHHHHHHHHHHhcC
Q 039448 403 ESLLDYHYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQNLPDEDFPYRKQLHECVGSAVGSMG 472 (1276)
Q Consensus 403 ~~~L~~~y~~aw~~vL~vl~~lf~~lg~~~~~~l~~~L~~l~~lr~~~~~~f~~~~~ld~~iGaAi~amG 472 (1276)
+..++-| .++++......+-.++|.. |... +.+.+++ ||.-+||+-.-+++...+..+|
T Consensus 690 rmA~drr---~ykqlv~ttv~ia~KvG~~--~~v~---R~v~~lk---de~e~yrkm~~etv~ri~~~lg 748 (1172)
T KOG0213|consen 690 RMALDRR---NYKQLVDTTVEIAAKVGSD--PIVS---RVVLDLK---DEPEQYRKMVAETVSRIVGRLG 748 (1172)
T ss_pred hhhcccc---chhhHHHHHHHHHHHhCch--HHHH---HHhhhhc---cccHHHHHHHHHHHHHHHhccc
Confidence 2233322 1245555666666677732 3333 3445555 4445677765555554444444
No 97
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.06 E-value=7.8e+02 Score=32.36 Aligned_cols=205 Identities=12% Similarity=0.141 Sum_probs=114.8
Q ss_pred HHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHhHHHHHHHHHcCCCCh-----
Q 039448 666 TIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLNA----- 740 (1276)
Q Consensus 666 tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv~~l~~----- 740 (1276)
--+.|...-+....+.=|.+++...+.... .+.....++.++.+++.+++.
T Consensus 25 l~~k~~em~t~~~F~eeflr~vn~il~vkK------------------------resi~dRIl~fla~fv~sl~q~d~e~ 80 (892)
T KOG2025|consen 25 LLAKVMEMLTAHEFSEEFLRVVNYILLVKK------------------------RESIPDRILSFLARFVESLPQLDKEE 80 (892)
T ss_pred HHHHHHHhhhHhhhHHHHHHHHHHheeecc------------------------CCCcHHHHHHHHHHHHHhhhccCchh
Confidence 334444555567777778777766544331 112345678888888877654
Q ss_pred hhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCC
Q 039448 741 KEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKD 820 (1276)
Q Consensus 741 ~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~ 820 (1276)
+-+.-+|..+....+++|..+-+|..-+|..++......=..-.+-|.+-|+..+-.--+.-|..-+.||..+= .-+++
T Consensus 81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ-~d~~d 159 (892)
T KOG2025|consen 81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQ-GDPKD 159 (892)
T ss_pred hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHh-cCCCC
Confidence 34666666677777888999999999999999872221111112223333332222222333444444444331 11111
Q ss_pred C----------------h-HHHHh-----hhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHH
Q 039448 821 D----------------S-EQRRS-----YILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQF 878 (1276)
Q Consensus 821 ~----------------~-~~~~~-----~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef 878 (1276)
+ + |.+.. .-=++.+|=|+==+||+|.-.|..+|+-+..=-+ |. .-++..+
T Consensus 160 ee~~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid-~r-------~lsi~kr 231 (892)
T KOG2025|consen 160 EECPVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKID-LR-------SLSIDKR 231 (892)
T ss_pred CcccHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhh-hh-------hhhHHHH
Confidence 1 0 00000 0112345667777899999999999986543223 22 2457788
Q ss_pred HHHHhhhccCCChhHHHHHHHHHHH
Q 039448 879 FNMVAGGLAGESPHMISAAVKGLAR 903 (1276)
Q Consensus 879 ~~mV~aGLaG~tphMiSatI~ALsr 903 (1276)
+.++=-||--..-...-|.+-+|..
T Consensus 232 v~LlewgLnDRe~sVk~A~~d~il~ 256 (892)
T KOG2025|consen 232 VLLLEWGLNDREFSVKGALVDAILS 256 (892)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHH
Confidence 8888888876655555555555543
No 98
>PRK09687 putative lyase; Provisional
Probab=48.02 E-value=5e+02 Score=30.13 Aligned_cols=161 Identities=12% Similarity=0.067 Sum_probs=86.1
Q ss_pred HHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHH
Q 039448 746 LFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQR 825 (1276)
Q Consensus 746 Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~ 825 (1276)
.|..+...+++.++.+..-|-.+|..|-..... ..+....|...+.. .+.-.-|-.++..| .+++...
T Consensus 55 ~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----~~~a~~~L~~l~~~--D~d~~VR~~A~~aL-G~~~~~~---- 122 (280)
T PRK09687 55 VFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----QDNVFNILNNLALE--DKSACVRASAINAT-GHRCKKN---- 122 (280)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----hHHHHHHHHHHHhc--CCCHHHHHHHHHHH-hcccccc----
Confidence 344445566777777777777777765321110 12233333322111 12223333444433 2332221
Q ss_pred HhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 039448 826 RSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLA 905 (1276)
Q Consensus 826 ~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl 905 (1276)
....+.++...+.+.++.|..+|..|-.-|-.++. +..+. .+...|.-..+.....++.||+.+=
T Consensus 123 -~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~----------~~ai~----~L~~~L~d~~~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 123 -PLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND----------EAAIP----LLINLLKDPNGDVRNWAAFALNSNK 187 (280)
T ss_pred -cccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC----------HHHHH----HHHHHhcCCCHHHHHHHHHHHhcCC
Confidence 12234556666677888888899888777744332 23343 3344455667788888888888772
Q ss_pred HHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHH
Q 039448 906 YEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGL 940 (1276)
Q Consensus 906 ~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgF 940 (1276)
+. -.+..+.+.-.|.+.+.+|.+.|+.-
T Consensus 188 ~~-------~~~~~~~L~~~L~D~~~~VR~~A~~a 215 (280)
T PRK09687 188 YD-------NPDIREAFVAMLQDKNEEIRIEAIIG 215 (280)
T ss_pred CC-------CHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 21 11233334556678888887775433
No 99
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.66 E-value=1.6e+02 Score=39.35 Aligned_cols=115 Identities=12% Similarity=0.100 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhh---chhHHhhhcccccccCCCcCC
Q 039448 313 RLLNVGMIKIYSINREICSTKLPIVFNALKDILASEHEEAIFAATEALKNLINACI---DESLIKQGVDQITNVNSDARK 389 (1276)
Q Consensus 313 ~vl~~a~~~l~~~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci---~~~~~~~~v~~~~~~~~~~~~ 389 (1276)
-..-.+....+.++...|-.+|=.++..+..-++|+.+.|.+.|..|+.++.+.|= .+++|.+.++.+
T Consensus 566 Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYl--------- 636 (1014)
T KOG4524|consen 566 CIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYL--------- 636 (1014)
T ss_pred hhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHH---------
Confidence 34455888888899999999999999999999999999999999999999999997 466777543322
Q ss_pred CChHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhh
Q 039448 390 SGPTVIEKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQ 447 (1276)
Q Consensus 390 ~~~~~i~~i~~~~~~~L~~~y~~aw~~vL~vl~~lf~~lg~~~~~~l~~~L~~l~~lr 447 (1276)
+..|..-+ + ...--+++=.|+..+..-=+....|.+..+++++....
T Consensus 637 -----v~sla~~L----~--~~~~s~~~~~Vl~vVl~~s~~~~i~~l~dvvq~i~~~l 683 (1014)
T KOG4524|consen 637 -----VNSLALRL----N--TSGMSPRVPDVLMVVLQYSDYGTIPNLKDVVQTIFKLL 683 (1014)
T ss_pred -----HHHHHHHh----c--cCCCCchhHHHHHHHhhcCCCCchhhHHHHHHHHHHHH
Confidence 22222222 1 11122333344444444444455677777777665543
No 100
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.37 E-value=70 Score=42.77 Aligned_cols=102 Identities=11% Similarity=0.113 Sum_probs=70.8
Q ss_pred CchhHHHHHHHhhhhccCcChHHHhhhhhhHHHHHHHHhhhcCCCchhHH-HHHHHHHHHHhccCCCCCcchhh-HHHHH
Q 039448 82 SSHIIGSLSTILSLLLPKISVAVLKKKGDFLTDLVVRVVRLSSVTAGAVA-SGLTSLSRLLTGRGRVNWSDVSQ-LYGVV 159 (1276)
Q Consensus 82 ~~~~~~a~lyLL~lv~p~vP~~vLr~kf~~~~~~l~~~l~~~~~~~~~lR-s~i~CL~~LL~aqd~~~W~~~~~-~~~~L 159 (1276)
+++.-+-.++.|+.++..-|-.-.----...+.+....|.+. ..|++| |+.-|||.|-.--|.+.|..... +..-|
T Consensus 570 ~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~--~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL 647 (1387)
T KOG1517|consen 570 PPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDD--PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKL 647 (1387)
T ss_pred CHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCC--ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHH
Confidence 445666667777766644333211111122233333333322 357777 99999999998888899988775 99999
Q ss_pred HhhccCCchhHHHHHHHHHHHHHhcc
Q 039448 160 LAFMTDSRLKVRRQSHLCVREILLSL 185 (1276)
Q Consensus 160 L~f~~d~RPKVRK~Aq~av~~IL~~~ 185 (1276)
..+-.|+=|-||-+|-=|+-..|.+.
T Consensus 648 ~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 648 ILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHhcCccHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999888763
No 101
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=45.80 E-value=5e+02 Score=33.13 Aligned_cols=148 Identities=12% Similarity=0.129 Sum_probs=93.6
Q ss_pred CCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHH
Q 039448 736 PGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIA 815 (1276)
Q Consensus 736 ~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~ 815 (1276)
.++..+-+...-+..+.+|.+.....|=-|.|+|.+|.-.....+..--.++..++.+.-.+.+. -+|..|+
T Consensus 294 ~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~Ist-------yAITtLL- 365 (898)
T COG5240 294 ENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTIST-------YAITTLL- 365 (898)
T ss_pred hccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchH-------HHHHHHH-
Confidence 35566667777777788888888899999999999998755555444344566666555444333 3344443
Q ss_pred hccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHH
Q 039448 816 HVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMIS 895 (1276)
Q Consensus 816 ~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiS 895 (1276)
|+.. .+-|.+++.-|.--..|.+..=...+.|.+..++..|.+. ..++-.|+.-+.--=+| -...-
T Consensus 366 ---KTGt----~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k-----~~s~l~FL~~~L~~eGg--~eFK~ 431 (898)
T COG5240 366 ---KTGT----EETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSK-----KLSYLDFLGSSLLQEGG--LEFKK 431 (898)
T ss_pred ---HcCc----hhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHH-----HHHHHHHHHHHHHhccc--chHHH
Confidence 3222 2445555555555556777777888888888888887542 45566666544433223 23555
Q ss_pred HHHHHHHHHH
Q 039448 896 AAVKGLARLA 905 (1276)
Q Consensus 896 atI~ALsrLl 905 (1276)
+.|-||++.+
T Consensus 432 ~~Vdaisd~~ 441 (898)
T COG5240 432 YMVDAISDAM 441 (898)
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 102
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=44.88 E-value=4.2e+02 Score=32.55 Aligned_cols=40 Identities=15% Similarity=0.079 Sum_probs=29.1
Q ss_pred HHhcCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHH
Q 039448 322 IYSINREICSTKLPIVFNALKDILASEHEEAIFAATEALK 361 (1276)
Q Consensus 322 l~~~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~ 361 (1276)
+-.+++..-..-.+.+|..+..++.|+|-+|+..|-..+.
T Consensus 283 l~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~ 322 (409)
T PF01603_consen 283 LEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN 322 (409)
T ss_dssp HTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC
Confidence 3345566666677889999999999999999877665443
No 103
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=44.73 E-value=64 Score=35.59 Aligned_cols=80 Identities=16% Similarity=0.241 Sum_probs=64.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCHHHHHhcCC
Q 039448 921 STFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDAVKAVMP 1000 (1276)
Q Consensus 921 ~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~e~V~~~~P 1000 (1276)
++..+|+-+-...-+.+|..+.++...+-.. -.+.+..++..|..|-.+..-++|..+...+-..||-+|-|.|-.++|
T Consensus 4 ~~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~-~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lP 82 (198)
T PF08161_consen 4 TLESLLSYRYQHAWPEVLNVLSALFEKLGER-SSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILP 82 (198)
T ss_pred HHHHHhCcchHHHHHHHHHHHHHHHHHHhhh-ccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCC
Confidence 4455666677777777888888877777643 346788888899999887768899999999999999999999999998
Q ss_pred H
Q 039448 1001 E 1001 (1276)
Q Consensus 1001 e 1001 (1276)
-
T Consensus 83 L 83 (198)
T PF08161_consen 83 L 83 (198)
T ss_pred C
Confidence 4
No 104
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=44.70 E-value=1.8e+02 Score=29.30 Aligned_cols=67 Identities=15% Similarity=0.404 Sum_probs=48.6
Q ss_pred HHhhhhhhHHHHHHHHhhhcCCC--chhHHHHHHHHHHHHhccCCCCCcchh-----hHHHHHHhhccCCchhHHHHHHH
Q 039448 104 VLKKKGDFLTDLVVRVVRLSSVT--AGAVASGLTSLSRLLTGRGRVNWSDVS-----QLYGVVLAFMTDSRLKVRRQSHL 176 (1276)
Q Consensus 104 vLr~kf~~~~~~l~~~l~~~~~~--~~~lRs~i~CL~~LL~aqd~~~W~~~~-----~~~~~LL~f~~d~RPKVRK~Aq~ 176 (1276)
.|+..+..++..+..++...... ..++..++.|+.+.+. |-.+. +.++.++++- +-|..|-.|-+
T Consensus 75 ~l~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~------~~~~~~i~~~~~l~~~~~~l--~~~~~~~~A~~ 146 (148)
T PF08389_consen 75 ALRSNSPDILEILSQILSQSSSEANEELVKAALKCLKSWIS------WIPIELIINSNLLNLIFQLL--QSPELREAAAE 146 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTT------TS-HHHHHSSSHHHHHHHHT--TSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH------hCCHHHhccHHHHHHHHHHc--CCHHHHHHHHH
Confidence 45556777888888888877543 7789999999999987 86533 2556665544 77778888877
Q ss_pred HH
Q 039448 177 CV 178 (1276)
Q Consensus 177 av 178 (1276)
|+
T Consensus 147 cl 148 (148)
T PF08389_consen 147 CL 148 (148)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 105
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=44.38 E-value=30 Score=44.24 Aligned_cols=191 Identities=14% Similarity=0.186 Sum_probs=105.0
Q ss_pred hhHhHHHHHHHhhcCCCccccccHHHHHHHhhccCC-HHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCC
Q 039448 640 SARELLSILSRIFLESAKDEGGCLQSTIGDFASIAD-KEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNES 718 (1276)
Q Consensus 640 ~A~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~-~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1276)
|-+.++|+|.-+|.......|..+++-|..|....+ +.+-.++|-.+...+.+..
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn------------------------ 382 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTN------------------------ 382 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCC------------------------
Confidence 788999999999999998999999999999986654 5555677877766654321
Q ss_pred CchhhHhHHHHHHHHHcCCCChhhHH-HHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCC
Q 039448 719 SPDFMRARLFDLALSLLPGLNAKEID-VLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPS 797 (1276)
Q Consensus 719 ~~~~~~~~llDL~~alv~~l~~~~~~-~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~ 797 (1276)
+..|..-+--+..++|-|....++ .+.+++..+-.+.++.+--+.-=+|-+|-..-..-++++ -+...+..++..
T Consensus 383 --~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~R~~--vL~~aftralkd 458 (690)
T KOG1243|consen 383 --ATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASVRKR--VLASAFTRALKD 458 (690)
T ss_pred --HHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCcccccceeeecccccccchhhhcc--ccchhhhhhhcC
Confidence 233433333444444444443211 122222222113333222222111212111100001111 111122223333
Q ss_pred CCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Q 039448 798 CHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGD 865 (1276)
Q Consensus 798 ~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~ 865 (1276)
-..+||..=+..+... ++..+ ..+....++|-++.-+.|.+.-+|..|+..+..--.+..+
T Consensus 459 pf~paR~a~v~~l~at----~~~~~---~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~ 519 (690)
T KOG1243|consen 459 PFVPARKAGVLALAAT----QEYFD---QSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEK 519 (690)
T ss_pred CCCCchhhhhHHHhhc----ccccc---hhhhhhhccccccccccCcccchhhHHHHHHHHHHhhhhh
Confidence 4455555444433322 22221 3567788888888899999999999999998887776654
No 106
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=44.35 E-value=5.7e+02 Score=29.73 Aligned_cols=197 Identities=17% Similarity=0.228 Sum_probs=111.9
Q ss_pred HHHHHHHhcCcchhhhh--HHHHHHH-HHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhh
Q 039448 767 KVLSTILRKCDGFLSSR--LEELLGL-MIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKE 843 (1276)
Q Consensus 767 k~L~~i~~~~~~f~~~~--~~el~~~-L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke 843 (1276)
-+...+++...+-+..+ +..+.+. +.-...+....-|..=++||-..- .+.+ ++....++-.+-+.+.
T Consensus 5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~-Lld~--------~~a~~~l~l~~~~~~~ 75 (298)
T PF12719_consen 5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCC-LLDK--------ELAKEHLPLFLQALQK 75 (298)
T ss_pred HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-HhCh--------HHHHHHHHHHHHHHHh
Confidence 34555666444334443 3355544 445666666777888888886442 2111 2223333333333333
Q ss_pred hhHHHHHHHHHHHHHHHHHhccC-----CCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 039448 844 ANKRTRNRAYDVLVQIGRAFGDE-----ENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVYKL 918 (1276)
Q Consensus 844 ~N~ktR~~A~~lLv~mg~~~~~~-----~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~l 918 (1276)
..+..|..|...|..|.-.+.-. ..++.......+..++...|-...|...+.++-++++|++...=.- ..++
T Consensus 76 ~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~--~~~v 153 (298)
T PF12719_consen 76 DDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD--PPKV 153 (298)
T ss_pred CCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc--HHHH
Confidence 47888888888887776654321 1111345677888899999988889999999999999998742211 1223
Q ss_pred hhHHH-HHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcC
Q 039448 919 LPSTF-LLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCG 991 (1276)
Q Consensus 919 l~~v~-llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG 991 (1276)
+...+ ++..-.+.+ ...|++.|.-.+|..-.++.+|+..+..-.-..|..+.+..+
T Consensus 154 L~~Lll~yF~p~t~~-----------------~~~LrQ~L~~Ffp~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 154 LSRLLLLYFNPSTED-----------------NQRLRQCLSVFFPVYASSSPENQERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHcCcccCC-----------------cHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhCcc
Confidence 33222 222222111 125556666666666666666666555555555555555544
No 107
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=44.27 E-value=3.4e+02 Score=31.42 Aligned_cols=155 Identities=15% Similarity=0.095 Sum_probs=90.2
Q ss_pred HHHHHHHH-hccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCC-Cccc-HHHHHHHHhh
Q 039448 808 DCLYFIIA-HVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGG-GKEN-LYQFFNMVAG 884 (1276)
Q Consensus 808 ~cL~~lv~-~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~-~~~~-l~ef~~mV~a 884 (1276)
-++.++|. ++... ...+.++-++|=+..-.=|.+...|..+..+|..+...+....... ..-+ .+-|...+..
T Consensus 98 ~~l~w~v~~~~~~~----~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~ 173 (282)
T PF10521_consen 98 HVLSWIVLSQLDRP----WISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFP 173 (282)
T ss_pred HHHHHHHHhcCCcc----hHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHH
Confidence 46777765 43332 2457888889987777789999999999999999998765431000 0122 3334456666
Q ss_pred hcc--------CCChhHHHHHHHHHHHHHH---Hhhh------hhHHHHH-hhhHHHHHhccCCHHHHHHHHHHHHHHHh
Q 039448 885 GLA--------GESPHMISAAVKGLARLAY---EFSD------LVSNVYK-LLPSTFLLLQRKNREIIKANLGLLKVLVA 946 (1276)
Q Consensus 885 GLa--------G~tphMiSatI~ALsrLl~---ef~d------~i~~~~~-ll~~v~llL~s~~REIvKsaLgFvKV~v~ 946 (1276)
.|. -++++.+.++.-||-.|+- ...+ +...+.+ ++.++.-.-.....+++...+..+..+|.
T Consensus 174 ~L~~LP~~tp~~~s~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~ 253 (282)
T PF10521_consen 174 CLYYLPPITPEDESLELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIID 253 (282)
T ss_pred HhhcCCCCCCchhhHHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHH
Confidence 665 4556777777777777743 2111 1111222 33332111112356777777777777776
Q ss_pred hcChhHHHHHHHHHHHHHhhc
Q 039448 947 KSHAEGLQIHLASMVEGLLKW 967 (1276)
Q Consensus 947 ~lp~~~l~~~L~~lv~~Ll~w 967 (1276)
.|-... -.||+.+++-|..|
T Consensus 254 ~lGi~~-~~hL~rii~~l~~~ 273 (282)
T PF10521_consen 254 ELGISS-VKHLQRIIPVLSQI 273 (282)
T ss_pred HhccHH-HHHHHHHHHHHHHH
Confidence 665433 35666666655443
No 108
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=44.22 E-value=76 Score=35.93 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=66.2
Q ss_pred ccCcChHHHhhhhhhHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhccCCCCCcchhhHHHHHHhhccCC----chhHHH
Q 039448 97 LPKISVAVLKKKGDFLTDLVVRVVRLSSVTAGAVASGLTSLSRLLTGRGRVNWSDVSQLYGVVLAFMTDS----RLKVRR 172 (1276)
Q Consensus 97 ~p~vP~~vLr~kf~~~~~~l~~~l~~~~~~~~~lRs~i~CL~~LL~aqd~~~W~~~~~~~~~LL~f~~d~----RPKVRK 172 (1276)
-|.+...-|.+--..++..|..++..+.-.++++=.+|+||+.|.+.... | ...++.+|++|..+. =|-.-|
T Consensus 100 Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~i~~~~~~a~insL~~Iak~RP~--~--~~~Il~~ll~~~~~~~~~~~~~~~~ 175 (239)
T PF11935_consen 100 HPLLNPQQLEAEANGLLDRLLDVLQSPHISSPLLTAIINSLSNIAKQRPQ--F--MSRILPALLSFNPNLSPMQPPTLSK 175 (239)
T ss_dssp -SSS-HHHHHHHHHHHHHHHHHHHC-TT--HHHHHHHHHHHHHHHHHSGG--G--HHHHHHHHHHHHHS------TTCSH
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhH--H--HHHHHHHHHhcCccccccCCccchH
Confidence 36666677888888888888888888777888999999999998776432 1 345899999999876 332333
Q ss_pred HHHHHHHHHHh----ccCCCCCccchhHHHHHHHH
Q 039448 173 QSHLCVREILL----SLQGTLVLAPASEAITNMFE 203 (1276)
Q Consensus 173 ~Aq~av~~IL~----~~~~~p~~hpas~~~a~~~~ 203 (1276)
.+..+|...|+ ++...|..+|..+.+...+.
T Consensus 176 ~~v~sv~k~lk~~l~~llk~~~~~~~~~~i~~~L~ 210 (239)
T PF11935_consen 176 LQVKSVEKTLKIFLLHLLKHPASSPFQGRITQALT 210 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHTSGGGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCchhhHHHHHHHHH
Confidence 33333443333 33444555577777777665
No 109
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.95 E-value=2.7e+02 Score=36.56 Aligned_cols=125 Identities=15% Similarity=0.190 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhhccCCCchhHHHHHHHHHHhhcc--CchhHHHHHHHHH----HHHhcCCC--------CC---------
Q 039448 225 EVLYVLDALKECLPLMSTKYTAVILKYFKTLLEL--RQPLVTRRVTDAL----NVICLHPT--------LE--------- 281 (1276)
Q Consensus 225 ~~lh~L~lLk~~l~~~~~~~~~~i~~~ll~Ll~l--~n~~lt~~~~~~~----~~lf~~~~--------~~--------- 281 (1276)
.|+-+-++.-.+. |...+..|.+.|++||+- .++|++-++...| -+||.+-. +.
T Consensus 303 VVmA~aql~y~lA---P~~~~~~i~kaLvrLLrs~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKle 379 (968)
T KOG1060|consen 303 VVMAVAQLFYHLA---PKNQVTKIAKALVRLLRSNREVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLE 379 (968)
T ss_pred HHHHHHhHHHhhC---CHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHH
Confidence 4444444444444 345888999999999987 4677776666555 23443211 11
Q ss_pred -----CCHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCHhHHhhhhh----HHHHHHHHHhcCCchhH
Q 039448 282 -----VSAEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINREICSTKLP----IVFNALKDILASEHEEA 352 (1276)
Q Consensus 282 -----l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~~~c~~~LP----~~f~~~~~~l~S~~~~v 352 (1276)
.+...+..|+..|..|..+.+.. ..+..++ |+. .|...+- ...+.+..++.|..+-|
T Consensus 380 iLs~La~esni~~ILrE~q~YI~s~d~~--faa~aV~----AiG--------rCA~~~~sv~~tCL~gLv~Llsshde~V 445 (968)
T KOG1060|consen 380 ILSNLANESNISEILRELQTYIKSSDRS--FAAAAVK----AIG--------RCASRIGSVTDTCLNGLVQLLSSHDELV 445 (968)
T ss_pred HHHHHhhhccHHHHHHHHHHHHhcCchh--HHHHHHH----HHH--------HHHHhhCchhhHHHHHHHHHHhcccchh
Confidence 11122566778888887765541 1222212 111 2444332 23444556778888888
Q ss_pred HHHHHHHHHHHHHH
Q 039448 353 IFAATEALKNLINA 366 (1276)
Q Consensus 353 ~~~as~~L~~li~~ 366 (1276)
+..+...++.||+.
T Consensus 446 v~eaV~vIk~Llq~ 459 (968)
T KOG1060|consen 446 VAEAVVVIKRLLQK 459 (968)
T ss_pred HHHHHHHHHHHHhh
Confidence 88898999888763
No 110
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=43.60 E-value=4.6e+02 Score=37.08 Aligned_cols=82 Identities=18% Similarity=0.271 Sum_probs=48.8
Q ss_pred HHHHHHHHcCCCChh-------hHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCC
Q 039448 727 LFDLALSLLPGLNAK-------EIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCH 799 (1276)
Q Consensus 727 llDL~~alv~~l~~~-------~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~ 799 (1276)
-|-|++-|.-.-+.+ .-.+||++|..--..+...--+|+.++|+.|..+| +-.|..+...-+.+.
T Consensus 236 CLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC--------~~~~~~lqar~~~~a 307 (2195)
T KOG2122|consen 236 CLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYC--------ETCWTWLQARGPAIA 307 (2195)
T ss_pred chHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHH--------HHHHHHHHhcCCCCC
Confidence 345555555444432 23345554433222223445678888888876654 234555666666777
Q ss_pred ccchHHHH-HHHHHHHHh
Q 039448 800 FSAKRHRL-DCLYFIIAH 816 (1276)
Q Consensus 800 ~~ak~~RL-~cL~~lv~~ 816 (1276)
...-+++| .++..|++.
T Consensus 308 pa~~~H~lcaA~~~lMK~ 325 (2195)
T KOG2122|consen 308 PASDEHQLCAALCTLMKL 325 (2195)
T ss_pred CcccchhhHHHHHHHHHh
Confidence 88889999 888888754
No 111
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=43.48 E-value=3.3e+02 Score=26.89 Aligned_cols=89 Identities=20% Similarity=0.208 Sum_probs=59.6
Q ss_pred HHHHHHHhhhccCCCh-hHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhcc--CCHHHHHHHHHHHHHHHhhcChhH
Q 039448 876 YQFFNMVAGGLAGESP-HMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQR--KNREIIKANLGLLKVLVAKSHAEG 952 (1276)
Q Consensus 876 ~ef~~mV~aGLaG~tp-hMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s--~~REIvKsaLgFvKV~v~~lp~~~ 952 (1276)
-.+|+.+.-.+-|..| .-.--++.||..++---+..+.. ..+.++.+|++ ...|.-..++.-=.++|..|+.+.
T Consensus 13 l~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~---~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~~~~ 89 (107)
T PF08064_consen 13 LTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISS---ARPQIMACLQSALEIPELREEALSCWNCFIKTLDEED 89 (107)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCCHHH
Confidence 3444444444444443 34667777888777644444443 23334333333 445888889999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q 039448 953 LQIHLASMVEGLLKW 967 (1276)
Q Consensus 953 l~~~L~~lv~~Ll~w 967 (1276)
|.+.++.++-.++.+
T Consensus 90 l~~ll~~~~~~l~~~ 104 (107)
T PF08064_consen 90 LGPLLDQIFAILLPL 104 (107)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887653
No 112
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.47 E-value=5.3e+02 Score=33.72 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=68.8
Q ss_pred HhhhHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC--CCCcccHHHHHHHHhhhccCCChhHHHHHHHHHH
Q 039448 826 RSYILSSFL-TEIILALKEANKRTRNRAYDVLVQIGRAFGDEEN--GGGKENLYQFFNMVAGGLAGESPHMISAAVKGLA 902 (1276)
Q Consensus 826 ~~~~i~~~l-pEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~--~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALs 902 (1276)
..+++..+. |=+--++|-.|..+|.+|-.+++..-- |.+++. .+...-++.-|..++--|...-|...|-+|..++
T Consensus 167 Veeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP-~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~ 245 (1005)
T KOG1949|consen 167 VEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFP-IRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVC 245 (1005)
T ss_pred HHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhcc-CCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 345565555 334457799999999999999987532 333211 1123345566667777888989999999999999
Q ss_pred HHHHHhhhhhHH--HHHhhhHHH
Q 039448 903 RLAYEFSDLVSN--VYKLLPSTF 923 (1276)
Q Consensus 903 rLl~ef~d~i~~--~~~ll~~v~ 923 (1276)
++.|+|-+.++. +.+++..++
T Consensus 246 k~~s~fWe~iP~~i~~~ll~kI~ 268 (1005)
T KOG1949|consen 246 KITSKFWEMIPPTILIDLLKKIT 268 (1005)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHH
Confidence 999999888873 456666554
No 113
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=43.43 E-value=6.1e+02 Score=31.99 Aligned_cols=139 Identities=19% Similarity=0.162 Sum_probs=76.0
Q ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHH---HHhccCCChHHHHhhhHHHHHHHHHHH--
Q 039448 766 YKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFI---IAHVSKDDSEQRRSYILSSFLTEIILA-- 840 (1276)
Q Consensus 766 Yk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~l---v~~l~~~~~~~~~~~~i~~~lpEiIL~-- 840 (1276)
.|+|.-+|.+.. -......+.+++...+.+..+ ..|-|..++..+ ........ +.....+-+.++.+.-=-
T Consensus 301 ~kIL~~L~kS~~--Aa~~~~~~~~i~~~~l~~~~~-~~klk~~~l~F~~~~~~~~~~~~-~~~l~~l~~~i~~~g~p~~~ 376 (501)
T PF13001_consen 301 EKILSLLSKSVI--AATSFPNILQIVFDGLYSDNT-NSKLKSLALQFIRGSSWIFKHIS-PQILKLLRPVILSQGWPLIQ 376 (501)
T ss_pred HHHHHHHHHhHH--HHhCCccHHHHHhccccCCcc-ccccchhcchhhhcchHHhhhcC-HHHHHHHHHHHHhcCccccc
Confidence 367777777421 122345566777776664433 234455555544 22211111 100111112222211111
Q ss_pred ------hhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhH
Q 039448 841 ------LKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVS 913 (1276)
Q Consensus 841 ------~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~ 913 (1276)
....+...|..||+.|=.++.+.-..... .-+-+..+| --|.++++-+.++---||+.|+--|++.-+
T Consensus 377 ~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~-d~~li~~LF----~sL~~~~~evr~sIqeALssl~~af~~~~~ 450 (501)
T PF13001_consen 377 DSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSK-DLSLIEFLF----DSLEDESPEVRVSIQEALSSLAPAFKDLPD 450 (501)
T ss_pred cccccCCCcccHHHHHHHHHHHHHHHccCcccccc-cHHHHHHHH----HHhhCcchHHHHHHHHHHHHHHHHHhcccc
Confidence 12357889999999999999976543211 233344444 455888787777777799999999987555
No 114
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=42.98 E-value=3.4e+02 Score=32.17 Aligned_cols=85 Identities=21% Similarity=0.188 Sum_probs=56.6
Q ss_pred HHHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhccCCCchhHHHHHHHHHHhh
Q 039448 177 CVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECLPLMSTKYTAVILKYFKTLL 256 (1276)
Q Consensus 177 av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~~~~~~~~~~i~~~ll~Ll 256 (1276)
.+.++|...+. .+.+..+.+.+..++.. ........|++..+-..+..+.....+.+.+.+.+=|
T Consensus 6 ~~~~~L~~l~~----~~~s~~i~~~l~~~~~K-----------E~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl 70 (339)
T PF12074_consen 6 LHASMLSSLPS----SSLSSKIVQGLSPLLSK-----------ESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGL 70 (339)
T ss_pred HHHHHHHhCCC----cchHHHHHHHHHHHHHh-----------hcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHh
Confidence 34566665433 23777777777776631 1134567788888877777766666777777777766
Q ss_pred ccCchhHHHHHHHHHHHHhc
Q 039448 257 ELRQPLVTRRVTDALNVICL 276 (1276)
Q Consensus 257 ~l~n~~lt~~~~~~~~~lf~ 276 (1276)
.-..+.+++.-+.++-..|.
T Consensus 71 ~~kk~~vR~~w~~~~~~~~~ 90 (339)
T PF12074_consen 71 KDKKPPVRRAWLLCLGEALW 90 (339)
T ss_pred cCCCCcHHHHHHHHHHHHHh
Confidence 66666678777777766665
No 115
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=42.53 E-value=65 Score=39.62 Aligned_cols=110 Identities=21% Similarity=0.237 Sum_probs=73.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHH---HhccCCCCCCc-----------ccHHHHHHHHhhhcc-CCChhHHHHHHHHHH
Q 039448 838 ILALKEANKRTRNRAYDVLVQIGR---AFGDEENGGGK-----------ENLYQFFNMVAGGLA-GESPHMISAAVKGLA 902 (1276)
Q Consensus 838 IL~~Ke~N~ktR~~A~~lLv~mg~---~~~~~~~~~~~-----------~~l~ef~~mV~aGLa-G~tphMiSatI~ALs 902 (1276)
.|++||.|-|+|..|.+++-.|-+ .|.....+..+ .++-+.-..+.+.|. -.||..+.-.|.+|+
T Consensus 53 ~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla 132 (728)
T KOG4535|consen 53 TLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLA 132 (728)
T ss_pred EEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 578899999999999999988754 33222112222 233444444444443 445777888888888
Q ss_pred HHHHHh--hh-hhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhh
Q 039448 903 RLAYEF--SD-LVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAK 947 (1276)
Q Consensus 903 rLl~ef--~d-~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~ 947 (1276)
.||..- .. .++.+.+....|--+..+++..|.-|+|-.+-++|..
T Consensus 133 ~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t 180 (728)
T KOG4535|consen 133 NLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVST 180 (728)
T ss_pred HHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhc
Confidence 888653 22 3445667777777888899988888888777776654
No 116
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.45 E-value=9.6e+02 Score=31.80 Aligned_cols=178 Identities=12% Similarity=0.172 Sum_probs=102.9
Q ss_pred HhHHHHHHHhhcCCCccccccHHHHHHHhhccC-CHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCc
Q 039448 642 RELLSILSRIFLESAKDEGGCLQSTIGDFASIA-DKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSP 720 (1276)
Q Consensus 642 ~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~-~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1276)
+.|+..+.|+..++++ ..+.+|-.+..+.. +|..+...-+..+..+... +.
T Consensus 242 ~~~i~~i~~lL~stss---aV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~ke-------------------------sd 293 (948)
T KOG1058|consen 242 ARYIRCIYNLLSSTSS---AVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKE-------------------------SD 293 (948)
T ss_pred hHHHHHHHHHHhcCCc---hhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhc-------------------------cC
Confidence 4677788888877643 33556655555554 3444433333333332211 12
Q ss_pred hhhHhHHHHHHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCC---
Q 039448 721 DFMRARLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPS--- 797 (1276)
Q Consensus 721 ~~~~~~llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~--- 797 (1276)
.....-++|.+..+- -..+.-+..|---+.++|...|--+-+|+.-+--.|.+++ +++++.+.|-.-+..
T Consensus 294 nnvklIvldrl~~l~-~~~~~il~~l~mDvLrvLss~dldvr~Ktldi~ldLvssr------Nvediv~~Lkke~~kT~~ 366 (948)
T KOG1058|consen 294 NNVKLIVLDRLSELK-ALHEKILQGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSR------NVEDIVQFLKKEVMKTHN 366 (948)
T ss_pred cchhhhhHHHHHHHh-hhhHHHHHHHHHHHHHHcCcccccHHHHHHHHHHhhhhhc------cHHHHHHHHHHHHHhccc
Confidence 245677899999887 2333333333333567788888889999999888888765 455555555433332
Q ss_pred -CCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 039448 798 -CHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAF 863 (1276)
Q Consensus 798 -~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~ 863 (1276)
-+.-..++|-..++.+-....+-. +....+||+.+=..-|.|+++ |-++|..+-+.+
T Consensus 367 ~e~d~~~~yRqlLiktih~cav~Fp------~~aatvV~~ll~fisD~N~~a---as~vl~FvrE~i 424 (948)
T KOG1058|consen 367 EESDDNGKYRQLLIKTIHACAVKFP------EVAATVVSLLLDFISDSNEAA---ASDVLMFVREAI 424 (948)
T ss_pred cccccchHHHHHHHHHHHHHhhcCh------HHHHHHHHHHHHHhccCCHHH---HHHHHHHHHHHH
Confidence 244567888888877643333322 345556666666666777654 444444444443
No 117
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.41 E-value=8.4e+02 Score=31.12 Aligned_cols=143 Identities=17% Similarity=0.146 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhh
Q 039448 805 HRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAG 884 (1276)
Q Consensus 805 ~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~a 884 (1276)
.=|-||.++++.++... ++.+|.++- ++|-+..-..-|.+|.-++-.+..-.... ++.++-....+..
T Consensus 408 AaLF~l~~~~~~~~~~e-----~~i~pevl~--~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~-----p~~le~v~~~~~~ 475 (559)
T KOG2081|consen 408 AALFILRAVAKNVSPEE-----NTIMPEVLK--LICNLPEQAPLRYTSILLLGEYSEWVEQH-----PELLEPVLRYIRQ 475 (559)
T ss_pred HHHHHHHHHhccCCccc-----cchHHHHHH--HHhCCccchhHHHHHHHHHHHHHHHHHhC-----cHHHHHHHHHHHH
Confidence 34677888877766543 334433332 34556666679999999999999877654 6888888899999
Q ss_pred hccCCChhHHHHHHHHHHHHHHHhhhhhHH----HHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHH
Q 039448 885 GLAGESPHMISAAVKGLARLAYEFSDLVSN----VYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASM 960 (1276)
Q Consensus 885 GLaG~tphMiSatI~ALsrLl~ef~d~i~~----~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~l 960 (1276)
|+.+. + |-|++-.|.-++..--.+.+.. ..++..+...++.+ .|. -..+.=++..+..+|...+..+++++
T Consensus 476 ~~~~~-~-~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~--~e~-a~l~~~~s~i~~~lp~~k~~~~~~el 550 (559)
T KOG2081|consen 476 GLQLK-R-LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQIN--EEA-ACLLQGISLIISNLPAHKAKIALEEL 550 (559)
T ss_pred Hhhhc-c-hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc--HHH-HHHHHHHHHHHhcCCHhhhhHHHHHH
Confidence 99996 4 8888888888888776665542 33333333333333 333 33778889999999999999999888
Q ss_pred HHHH
Q 039448 961 VEGL 964 (1276)
Q Consensus 961 v~~L 964 (1276)
+.-.
T Consensus 551 ~~~~ 554 (559)
T KOG2081|consen 551 CEPQ 554 (559)
T ss_pred hhHH
Confidence 7643
No 118
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=42.20 E-value=5.5e+02 Score=28.92 Aligned_cols=211 Identities=16% Similarity=0.112 Sum_probs=112.6
Q ss_pred chhHHHHHHHHHHhhccCCCchhHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCC-
Q 039448 222 GAQEVLYVLDALKECLPLMSTKYTAVILKYFKTLLELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVST- 300 (1276)
Q Consensus 222 ~~~~~lh~L~lLk~~l~~~~~~~~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~- 300 (1276)
.....++.|.+|......-. -.+..++..+..|.+-+...+..-+...+..+.....-.. ..+..++..+.-..+.
T Consensus 14 ~~~~~~~~L~~L~~l~~~~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--~~L~~~L~~~~~r~~~~ 90 (234)
T PF12530_consen 14 DPELQLPLLEALPSLACHKN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--PFLQPLLLLLILRIPSS 90 (234)
T ss_pred ChHHHHHHHHHHHHHhccCc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH--HHHHHHHHHHHhhcccc
Confidence 34567777887777776633 5566677777777776655554455555555554443222 3333333332111111
Q ss_pred -CCCchhhHHHHHHHHHHHHHHHHhcCHhHHhhhhhHHHHHHHHHh-cCCchhHHHHHHHHHHHHHHHhhchhHHhhhcc
Q 039448 301 -NETSADAMTFTARLLNVGMIKIYSINREICSTKLPIVFNALKDIL-ASEHEEAIFAATEALKNLINACIDESLIKQGVD 378 (1276)
Q Consensus 301 -~~~~~~~l~~~~~vl~~a~~~l~~~~~~~c~~~LP~~f~~~~~~l-~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~ 378 (1276)
.+....|-.-+ .+...+.-++..+|+ +-+.++..++.+| ....+.+..-+-++|..+..+.| +.
T Consensus 91 ~~~~~~~~~~~i--~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~v----vd---- 156 (234)
T PF12530_consen 91 FSSKDEFWECLI--SIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEV----VD---- 156 (234)
T ss_pred cCCCcchHHHHH--HHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhh----cc----
Confidence 11222222111 112366778888888 6677788888999 77777777777788877752211 11
Q ss_pred cccccCCCcCCCChHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHhhcccc-----h-hhHHHHHHHHHhhhcCCCC
Q 039448 379 QITNVNSDARKSGPTVIEKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYS-----S-YFMRGALKNLADMQNLPDE 452 (1276)
Q Consensus 379 ~~~~~~~~~~~~~~~~i~~i~~~~~~~L~~~y~~aw~~vL~vl~~lf~~lg~~~-----~-~~l~~~L~~l~~lr~~~~~ 452 (1276)
+.+.-..+..-|+..+. +.|+..+..+|.-++... + -+...++..+-++=. ..
T Consensus 157 ----------------~~s~w~vl~~~l~~~~r---p~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~--~~ 215 (234)
T PF12530_consen 157 ----------------FYSAWKVLQKKLSLDYR---PLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTS--SS 215 (234)
T ss_pred ----------------HHHHHHHHHHhcCCccc---hHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcc--cc
Confidence 11122222222343333 566766777776655432 1 234445555544432 22
Q ss_pred CCcchhHHHHHHHHHHHh
Q 039448 453 DFPYRKQLHECVGSAVGS 470 (1276)
Q Consensus 453 ~f~~~~~ld~~iGaAi~a 470 (1276)
++..-.+.-.+.++|+.+
T Consensus 216 ~~~~~~~~~~~~~~a~~a 233 (234)
T PF12530_consen 216 DVNVASQWTSVRLAAFEA 233 (234)
T ss_pred ccchHHHHHHHHHHHHhc
Confidence 344444555677777665
No 119
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=42.19 E-value=1e+03 Score=31.94 Aligned_cols=48 Identities=21% Similarity=0.311 Sum_probs=28.9
Q ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCHHHHHhcCCHHHHHHHHHHHHHHH
Q 039448 959 SMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDAVKAVMPEEHMKLLKNIRKIKE 1015 (1276)
Q Consensus 959 ~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~e~V~~~~Pee~~KlL~nIrK~~~ 1015 (1276)
-|++-|+..-......+|.-+.++|+-++-. +-++...+|-.+-..++
T Consensus 589 vlveiLLslls~~s~llR~~~~~vf~~~~~~---------~t~~~l~~ll~vl~~~~ 636 (784)
T PF04931_consen 589 VLVEILLSLLSQPSALLRKVSEQVFEAFCPH---------LTESGLQLLLDVLDAKE 636 (784)
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHHHHhh---------cCHHHHHHHHHHhccCC
Confidence 3344444444445678898999999988854 34444455555555444
No 120
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=41.33 E-value=14 Score=39.28 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCHHHHHhcCCH
Q 039448 979 IKLLLEMLVKKCGLDAVKAVMPE 1001 (1276)
Q Consensus 979 Vr~IlerLIRKfG~e~V~~~~Pe 1001 (1276)
|-.=||+||++||-|.|..+||-
T Consensus 8 Ig~EfE~lId~~G~e~v~~LmP~ 30 (158)
T PF09744_consen 8 IGKEFERLIDRYGEEAVKGLMPK 30 (158)
T ss_pred HHHHHHHHHHHhChhHHHHHHHH
Confidence 56669999999999999999994
No 121
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=39.04 E-value=3.8e+02 Score=26.72 Aligned_cols=89 Identities=20% Similarity=0.258 Sum_probs=60.1
Q ss_pred HHHHHHHHhhhccCCChh-HHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhcc--CCHHHHHHHHHHHHHHHhhcChh
Q 039448 875 LYQFFNMVAGGLAGESPH-MISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQR--KNREIIKANLGLLKVLVAKSHAE 951 (1276)
Q Consensus 875 l~ef~~mV~aGLaG~tph-MiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s--~~REIvKsaLgFvKV~v~~lp~~ 951 (1276)
+-.+|..++-..-|..|. -.--+|.|+..++---+..+. ..++.++.+|++ ...|.-..++.--.++|..|+.+
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~---~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~~~ 88 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHIS---SALPQIMACLQSALEIPELRSLALRCWHVLIKTLKEE 88 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCCHH
Confidence 334444454455555432 356667777776654343333 334555555544 67888889999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 039448 952 GLQIHLASMVEGLLK 966 (1276)
Q Consensus 952 ~l~~~L~~lv~~Ll~ 966 (1276)
.+.+.+..++..|+.
T Consensus 89 ~l~~ll~~~~~~i~~ 103 (107)
T smart00802 89 ELGPLLDQIFAAILP 103 (107)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988887754
No 122
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.92 E-value=6.7e+02 Score=31.81 Aligned_cols=197 Identities=13% Similarity=0.140 Sum_probs=109.9
Q ss_pred HHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHH-HHHHHHHhhCCCCCccchHHHHH
Q 039448 730 LALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLE-ELLGLMIEVLPSCHFSAKRHRLD 808 (1276)
Q Consensus 730 L~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~-el~~~L~~~~~~~~~~ak~~RL~ 808 (1276)
|...--|.-+.+.+..++.++...+.++|.-++.-|+=.|+.+.....+.+.--++ .+...|++.+.+...+.+-+=|+
T Consensus 222 lcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLR 301 (514)
T KOG0166|consen 222 LCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALR 301 (514)
T ss_pred HHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHh
Confidence 33333466777889999999888999999999999999999998755444333222 24444555555555555544455
Q ss_pred HHHHHHHhccCCChHHHHhhhHH-HHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHH-----HH
Q 039448 809 CLYFIIAHVSKDDSEQRRSYILS-SFLTEIILAL-KEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFF-----NM 881 (1276)
Q Consensus 809 cL~~lv~~l~~~~~~~~~~~~i~-~~lpEiIL~~-Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~-----~m 881 (1276)
++--++ .-++. .....|. ..||-.--+. +..+++-|+.|.=++-.|+. |..+.++.++ -+
T Consensus 302 aiGNIv----tG~d~-QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--------G~~~qiqaVida~l~p~ 368 (514)
T KOG0166|consen 302 AIGNIV----TGSDE-QTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA--------GNQEQIQAVIDANLIPV 368 (514)
T ss_pred hcccee----eccHH-HHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--------CCHHHHHHHHHcccHHH
Confidence 554333 22222 1222222 3334333333 35566677877777777654 1222333322 23
Q ss_pred HhhhccCCChhHHHHHHHHHHHHHHHhh-hhhHHHH--HhhhHHHHHhccCCHHHHHHHHH
Q 039448 882 VAGGLAGESPHMISAAVKGLARLAYEFS-DLVSNVY--KLLPSTFLLLQRKNREIIKANLG 939 (1276)
Q Consensus 882 V~aGLaG~tphMiSatI~ALsrLl~ef~-d~i~~~~--~ll~~v~llL~s~~REIvKsaLg 939 (1276)
++..|....=.+.--+..|++-+.-.-. +++.-+. .+++..|-+|+-.++.|+..+|.
T Consensus 369 Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld 429 (514)
T KOG0166|consen 369 LINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALD 429 (514)
T ss_pred HHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHH
Confidence 4444433224466777777775543321 1222111 34666677777777777766543
No 123
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.76 E-value=1.1e+03 Score=31.26 Aligned_cols=62 Identities=18% Similarity=0.176 Sum_probs=39.5
Q ss_pred cCCCChhhHHHHHHHHh--------------hhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCC
Q 039448 735 LPGLNAKEIDVLFVAIK--------------PALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLP 796 (1276)
Q Consensus 735 v~~l~~~~~~~Lf~~~~--------------~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~ 796 (1276)
.||+-...+-.+|++|. .=|+++|+++|--|--++.++......-..+-...+.++|+.+..
T Consensus 157 kpYvRKkAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsN 232 (877)
T KOG1059|consen 157 KPYVRKKAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSN 232 (877)
T ss_pred chHHHHHHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCC
Confidence 46666666666666543 334688999999999999999885443222223345555554433
No 124
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=38.73 E-value=66 Score=30.43 Aligned_cols=45 Identities=11% Similarity=0.243 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHhHHhhhhccchhhhhHHHHHHHHHhhhhCCCCCCcc
Q 039448 514 EKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLPSFCNYPVD 562 (1276)
Q Consensus 514 ~~~lPLa~~~~~k~~~~~~~~~~~~ak~~~tL~~QlWsLLPgFC~~P~D 562 (1276)
..|.||++.+-....++..++.++ ..|+|..+|=.-+||.+ -|..
T Consensus 7 ~qfiPL~EvlC~~I~dln~~~~~a---t~E~l~~~L~~~yp~i~-~Ps~ 51 (80)
T PF10264_consen 7 SQFIPLPEVLCWVISDLNAAGQPA---TQETLREHLRKHYPGIA-IPSQ 51 (80)
T ss_pred ccceeHHHHHHHHHHHHhccCCcc---hHHHHHHHHHHhCCCCC-CCCH
Confidence 478999999999999998888776 67999999999999987 4554
No 125
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=38.36 E-value=1.8e+02 Score=29.06 Aligned_cols=73 Identities=15% Similarity=0.252 Sum_probs=54.7
Q ss_pred HHHHHHhhhhcCCc----hhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccC
Q 039448 745 VLFVAIKPALQDDE----GLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSK 819 (1276)
Q Consensus 745 ~Lf~~~~~~l~~~d----~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~ 819 (1276)
-++..+...+.+.+ -..+|++-+.+.++++-+.+.+...+..|...|...++. ..=+..=++|...+|..+..
T Consensus 11 Gil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~ 87 (107)
T smart00802 11 GILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKE 87 (107)
T ss_pred HHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCH
Confidence 34455555555544 245899999999999988888999999999999888772 33566778888888877654
No 126
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.19 E-value=7.9e+02 Score=31.19 Aligned_cols=57 Identities=12% Similarity=0.153 Sum_probs=51.3
Q ss_pred chhHHHHHHHHHHHHhcc-CCCCCcchhhHHHHHHhhccCCchhHHHHHHHHHHHHHh
Q 039448 127 AGAVASGLTSLSRLLTGR-GRVNWSDVSQLYGVVLAFMTDSRLKVRRQSHLCVREILL 183 (1276)
Q Consensus 127 ~~~lRs~i~CL~~LL~aq-d~~~W~~~~~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~ 183 (1276)
-+.+|.+.-||.-|-+.- +++.|..+.+++.+|+.+.-|.-|.|..=|--||+-+-.
T Consensus 209 ~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd 266 (514)
T KOG0166|consen 209 LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD 266 (514)
T ss_pred hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 469999999999999997 667999999999999999999999999999888887664
No 127
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=37.95 E-value=1.9e+02 Score=28.58 Aligned_cols=73 Identities=14% Similarity=0.244 Sum_probs=53.9
Q ss_pred HHHHHHhhhhcC----CchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccC
Q 039448 745 VLFVAIKPALQD----DEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSK 819 (1276)
Q Consensus 745 ~Lf~~~~~~l~~----~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~ 819 (1276)
.++..+...+.+ .+...+|++-+-|.++++-+.+++......|...|...++.- .=+..=++|-..+|..+..
T Consensus 11 gil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~ 87 (107)
T PF08064_consen 11 GILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDE 87 (107)
T ss_pred HHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCH
Confidence 344444445544 345678999999999999888899999999999988887643 4456668888888877644
No 128
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=36.35 E-value=3.8e+02 Score=28.16 Aligned_cols=123 Identities=18% Similarity=0.144 Sum_probs=70.4
Q ss_pred HHHHhhccCCchhHHHHHHHHHHHHHhccCCC-----CCccchhHHHHHHHHHHHHHh-CCCCCCcCCC---CcchhHHH
Q 039448 157 GVVLAFMTDSRLKVRRQSHLCVREILLSLQGT-----LVLAPASEAITNMFEKFLLLA-GGSNTSADEK---PKGAQEVL 227 (1276)
Q Consensus 157 ~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~-----p~~hpas~~~a~~~~~~l~~~-~~s~~~~~~~---~~~~~~~l 227 (1276)
..++..--..|-|=|+.|-+-+..+|++++.. ...|...+.+.+++...-..- ++.+...+.. .+--+.+-
T Consensus 7 ~~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a 86 (155)
T PF11640_consen 7 NSILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCA 86 (155)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHH
Confidence 34556666789999999999999999975411 244444444444433332211 1111111111 01123444
Q ss_pred HHHH-HHHhhccCCCchhHHHHHHHHHHhhccCc-hhHHHH---HHHHHHHHhcCCC
Q 039448 228 YVLD-ALKECLPLMSTKYTAVILKYFKTLLELRQ-PLVTRR---VTDALNVICLHPT 279 (1276)
Q Consensus 228 h~L~-lLk~~l~~~~~~~~~~i~~~ll~Ll~l~n-~~lt~~---~~~~~~~lf~~~~ 279 (1276)
++|. ++....+.++.+.+..++..+..+|...+ .++... ...+|..|+..++
T Consensus 87 ~~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~~~ 143 (155)
T PF11640_consen 87 SALRLFVEKSNSRLKRKTVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSYPP 143 (155)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCCCh
Confidence 4443 34445688899999999999998888866 444444 4445555555554
No 129
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=35.74 E-value=59 Score=27.53 Aligned_cols=48 Identities=31% Similarity=0.392 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhH-HHHHhhhHHHHHhccCCHHHHHHHH
Q 039448 891 PHMISAAVKGLARLAYEFSDLVS-NVYKLLPSTFLLLQRKNREIIKANL 938 (1276)
Q Consensus 891 phMiSatI~ALsrLl~ef~d~i~-~~~~ll~~v~llL~s~~REIvKsaL 938 (1276)
|....+++.||+++.....+.+. .+.++++.+.-+|.+++.+|..++.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~ 49 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAA 49 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 34567889999997766666555 4678888888999998888866654
No 130
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=35.29 E-value=1e+03 Score=30.11 Aligned_cols=230 Identities=12% Similarity=0.112 Sum_probs=119.9
Q ss_pred hhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCC---hHH--HH
Q 039448 752 PALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDD---SEQ--RR 826 (1276)
Q Consensus 752 ~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~---~~~--~~ 826 (1276)
.+|..+|+.--|.|.+++.++-...-++-...+. | +... |-+..-+-++..|+.++.+=..+. ++. +.
T Consensus 107 sml~~~d~~~ak~a~~~~~eL~kr~iW~d~~tV~-i---~~~a---cf~~~~ki~vs~l~FfL~~D~~dee~dsd~~~d~ 179 (616)
T KOG2229|consen 107 SMLDQSDSTAAKMALDTMIELYKRNIWNDSKTVN-I---ITTA---CFSKVPKILVSGLRFFLGADNEDEEDDSDSESDE 179 (616)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHhcccccchhHH-H---HHHH---HhccCcHHHHhhhHHhccCCcccccccccccccc
Confidence 3455666666677777777776655555222222 2 2222 445556777777887764321111 000 01
Q ss_pred -hhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc----CCCC-----------CCcccHHHHHHHHhhhccCCC
Q 039448 827 -SYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGD----EENG-----------GGKENLYQFFNMVAGGLAGES 890 (1276)
Q Consensus 827 -~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~----~~~~-----------~~~~~l~ef~~mV~aGLaG~t 890 (1276)
..-+..++--. +|.++...--.|+..+...-.. .+++ +++.--+.+|.-+.++ +..
T Consensus 180 dg~~~~~l~~~~------vnkktkkr~~kl~~a~k~vkkkqk~~~~~~t~nfs~i~ll~DpQ~fAEkLfk~~~~~--~er 251 (616)
T KOG2229|consen 180 DGPDADALLHQR------VNKKTKKRQKKLLRAAKSVKKKQKKKKNAPTFNFSAIHLLHDPQGFAEKLFKQLLAC--KER 251 (616)
T ss_pred ccccHHHHHHHH------HhccchhhHHHHHHHHHHHHHHHhcCCCCCCCCccHHHhhcChhHHHHHHHHHHhhh--hhh
Confidence 12344444443 4555555444555555442221 1111 1233344555544444 111
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcch-
Q 039448 891 PHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQD- 969 (1276)
Q Consensus 891 phMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~- 969 (1276)
--..=--+--|||++=-++ -.+..+++-..-||+-.-|+|-+-..--+-.|-...|.+.++|.+.+|......--.
T Consensus 252 ~E~klm~~~lisRliG~Hk---L~l~~fY~fl~~yl~phqrDvTqIl~~aaQa~Hd~VP~d~iEpl~k~Ian~FVtD~~s 328 (616)
T KOG2229|consen 252 FEVKLMLMKLISRLIGIHK---LFLFGFYPFLQRYLQPHQRDVTQILAAAAQASHDLVPPDIIEPLLKTIANNFVTDENS 328 (616)
T ss_pred HHHHHHHHHHHHHHhhhhH---HHHhhhHHHHHHHcCcchhhHHHHHHHHHHhccCCCChHHhhHHHHHHHHHhcccCCC
Confidence 1001111223344431110 013455666677888899998877777788888889999999999988877654321
Q ss_pred -hhHHHHHHHHHHHHHHHHHhcCHHHHHhcC
Q 039448 970 -DTKNQFKSKIKLLLEMLVKKCGLDAVKAVM 999 (1276)
Q Consensus 970 -d~k~hfR~KVr~IlerLIRKfG~e~V~~~~ 999 (1276)
|.---=..-||.|.+|.=-..+-|.+..+.
T Consensus 329 pEv~~vgiN~iREic~RvplaMteeLLqDLa 359 (616)
T KOG2229|consen 329 PEVMAVGINAIREICERVPLAMTEELLQDLA 359 (616)
T ss_pred cceeehhhhHHHHHHhhcchhhcHHHHHHHH
Confidence 111111234777887777777777665543
No 131
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=34.94 E-value=1.3e+03 Score=31.01 Aligned_cols=19 Identities=37% Similarity=0.621 Sum_probs=15.1
Q ss_pred HHhh----------hhCCCCCCcchhhhH
Q 039448 549 LWSL----------LPSFCNYPVDTAESF 567 (1276)
Q Consensus 549 lWsL----------LPgFC~~P~D~~~sF 567 (1276)
.|+- ||.|..+|.+-.+.-
T Consensus 601 ~W~~~~~~~~~~~~LP~FS~~P~eyIT~I 629 (766)
T PF10191_consen 601 SWSSAGVGETSTLDLPSFSLSPQEYITQI 629 (766)
T ss_pred ccccCCccccccCCCCccccChHHHHHHH
Confidence 4998 999999999855433
No 132
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=34.45 E-value=5.6e+02 Score=27.23 Aligned_cols=118 Identities=19% Similarity=0.146 Sum_probs=69.6
Q ss_pred CchhHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCC-CCCCCH--HH-HHHHHHHhcccCCCCCCchhhHHHHHHHHH
Q 039448 241 STKYTAVILKYFKTLLELRQPLVTRRVTDALNVICLHP-TLEVSA--EA-LLDLLCSLALSVSTNETSADAMTFTARLLN 316 (1276)
Q Consensus 241 ~~~~~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~-~~~l~~--~~-~~~li~aL~~~~~~~~~~~~~l~~~~~vl~ 316 (1276)
....+.....-+..|+.-++++-.-.+...++.++... .+.+.. .. +..++.-|.. +++...+......+.
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~-----~~~~~~~~~ai~~L~ 93 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEK-----PDPPSVLEAAIITLT 93 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHH
Confidence 45567777777888888888888888888888887665 333311 11 3333443322 222233333323333
Q ss_pred HHHHHHHh---cCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 039448 317 VGMIKIYS---INREICSTKLPIVFNALKDILASEHEEAIFAATEALKNLIN 365 (1276)
Q Consensus 317 ~a~~~l~~---~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~ 365 (1276)
.=+..... +.++.+..+||.++..+..++.. ..+...+-++|..+|.
T Consensus 94 ~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 94 RLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred HHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 33333333 34577888999999999888774 3444556666665553
No 133
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=34.17 E-value=4.2e+02 Score=30.46 Aligned_cols=185 Identities=16% Similarity=0.189 Sum_probs=91.8
Q ss_pred CChhhHHHHHHHHhhhhc-CCchhhhhHHHHHHHHHHhcCcchhhhhHHH--HHHHHHhhCCCCCccchHHHHHHHHHHH
Q 039448 738 LNAKEIDVLFVAIKPALQ-DDEGLIQKKAYKVLSTILRKCDGFLSSRLEE--LLGLMIEVLPSCHFSAKRHRLDCLYFII 814 (1276)
Q Consensus 738 l~~~~~~~Lf~~~~~~l~-~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~e--l~~~L~~~~~~~~~~ak~~RL~cL~~lv 814 (1276)
++.+.++.|. .+|+ +.|+.+|.+|--.|....... |-...+.+ ...++...+++. ...-|-+.+..+-
T Consensus 9 l~~~~l~~Ll----~lL~~t~dp~i~e~al~al~n~aaf~--~nq~~Ir~~Ggi~lI~~lL~~p---~~~vr~~AL~aL~ 79 (254)
T PF04826_consen 9 LEAQELQKLL----CLLESTEDPFIQEKALIALGNSAAFP--FNQDIIRDLGGISLIGSLLNDP---NPSVREKALNALN 79 (254)
T ss_pred cCHHHHHHHH----HHHhcCCChHHHHHHHHHHHhhccCh--hHHHHHHHcCCHHHHHHHcCCC---ChHHHHHHHHHHH
Confidence 5555555444 4555 468999999988888765421 22222222 334455555543 3344455555553
Q ss_pred HhccCCChHH-HHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhH
Q 039448 815 AHVSKDDSEQ-RRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHM 893 (1276)
Q Consensus 815 ~~l~~~~~~~-~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphM 893 (1276)
.+......+ ....+|+.++.+++-+ ..|.....++..+|..|.-.-.. ..--...+..|+.++..| . ...
T Consensus 80 -Nls~~~en~~~Ik~~i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G-~---~~~ 150 (254)
T PF04826_consen 80 -NLSVNDENQEQIKMYIPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSG-S---EKT 150 (254)
T ss_pred -hcCCChhhHHHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcC-C---hHH
Confidence 333333221 1233455555555443 34667778999999988531100 000123566677666654 2 212
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHH-----HhhhHHHHHhccC-CHHHHHHHHHHHHHH
Q 039448 894 ISAAVKGLARLAYEFSDLVSNVY-----KLLPSTFLLLQRK-NREIIKANLGLLKVL 944 (1276)
Q Consensus 894 iSatI~ALsrLl~ef~d~i~~~~-----~ll~~v~llL~s~-~REIvKsaLgFvKV~ 944 (1276)
. +-+|- ++...+..-.... +.+.+...|+.++ ++|+.--+|-|+-.+
T Consensus 151 k---~~vLk-~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni 203 (254)
T PF04826_consen 151 K---VQVLK-VLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENI 203 (254)
T ss_pred H---HHHHH-HHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHH
Confidence 2 22222 3333322222111 4445555555554 677776666665443
No 134
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=33.95 E-value=1.3e+03 Score=30.83 Aligned_cols=246 Identities=16% Similarity=0.110 Sum_probs=150.7
Q ss_pred hhhHhHHHHHHHHHcCCCChhhHHHHHH-HHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCC
Q 039448 721 DFMRARLFDLALSLLPGLNAKEIDVLFV-AIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCH 799 (1276)
Q Consensus 721 ~~~~~~llDL~~alv~~l~~~~~~~Lf~-~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~ 799 (1276)
..+..+|==++..|+-+=| +..||. +++-+. ..|.-+-|=-|=-|....+.+..- .-...+.+...+.
T Consensus 34 ~~kidAmK~iIa~M~~G~d---mssLf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~----~lLavNti~kDl~--- 102 (757)
T COG5096 34 YKKIDAMKKIIAQMSLGED---MSSLFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPEL----ALLAVNTIQKDLQ--- 102 (757)
T ss_pred HHHHHHHHHHHHHHhcCCC---hHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHH----HHHHHHHHHhhcc---
Confidence 3456677778888888866 667775 444444 545555455566666666644311 1112234444433
Q ss_pred ccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 039448 800 FSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFF 879 (1276)
Q Consensus 800 ~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~ 879 (1276)
.+.-.-|--+|+.+- . . +..+++..+++=|.=|..+.|..+|+.|.-.+..|-+.=.+- . .++++.+
T Consensus 103 d~N~~iR~~AlR~ls-~-l------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l-~--~~~g~~~-- 169 (757)
T COG5096 103 DPNEEIRGFALRTLS-L-L------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL-Y--HELGLID-- 169 (757)
T ss_pred CCCHHHHHHHHHHHH-h-c------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh-h--hcccHHH--
Confidence 333344444444442 1 1 125789999999999999999999999999999887521110 0 0111222
Q ss_pred HHHhhhccCCChhHHHHHHHHHHHHHHH----hhh-h---hHH-------------------------------HHHhhh
Q 039448 880 NMVAGGLAGESPHMISAAVKGLARLAYE----FSD-L---VSN-------------------------------VYKLLP 920 (1276)
Q Consensus 880 ~mV~aGLaG~tphMiSatI~ALsrLl~e----f~d-~---i~~-------------------------------~~~ll~ 920 (1276)
..-.-++-++|-.+++|+.+|.-+--| |.. . ++. ......
T Consensus 170 -~l~~l~~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~ 248 (757)
T COG5096 170 -ILKELVADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEE 248 (757)
T ss_pred -HHHHHhhCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHH
Confidence 222334566788899998888766544 110 0 000 001111
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHHHhcC
Q 039448 921 STFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQ-DDTKNQFKSKIKLLLEMLVKKCG 991 (1276)
Q Consensus 921 ~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws-~d~k~hfR~KVr~IlerLIRKfG 991 (1276)
.++.-++++|-++++.++.++-.+..-+|..-+.-.+...+..|+.-. ...-.-.+..+..+|+++-+.|-
T Consensus 249 ~~~~~~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~~~~~~~vl~~~~~~~l~~~~k~~~ 320 (757)
T COG5096 249 RLSPPLQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKPESLIQYVLRRNIQIDLEVCSKLLD 320 (757)
T ss_pred hccchhhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCCHHHHHHHHHHhhHHHHHhhHHHHH
Confidence 124577889999999999999999999988777777766666776666 33444557778888888777653
No 135
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=33.48 E-value=1.1e+03 Score=29.95 Aligned_cols=132 Identities=15% Similarity=0.104 Sum_probs=65.9
Q ss_pred HHHHHHHHHhccCCChH---HHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHh
Q 039448 807 LDCLYFIIAHVSKDDSE---QRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVA 883 (1276)
Q Consensus 807 L~cL~~lv~~l~~~~~~---~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~ 883 (1276)
+-++..++...|..... .-..++++.+.-++==|.++.++. ...-.|..+|+. +.+..+..+...+.
T Consensus 418 ~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~~LkaLGN~-------g~~~~i~~l~~~l~ 487 (574)
T smart00638 418 LLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEE---EIQLYLKALGNA-------GHPSSIKVLEPYLE 487 (574)
T ss_pred HHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCch---heeeHHHhhhcc-------CChhHHHHHHHhcC
Confidence 34455566555554321 001234444443333333333333 334445666651 22344544444444
Q ss_pred hhccCCChhHHHHHHHHHHHHHHHhhhhhH-HHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHH
Q 039448 884 GGLAGESPHMISAAVKGLARLAYEFSDLVS-NVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHL 957 (1276)
Q Consensus 884 aGLaG~tphMiSatI~ALsrLl~ef~d~i~-~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L 957 (1276)
|=...+++...++|.||.++.....+.+. .+..++.+ .+.+-||.-+|+- +++.+-|...+..++
T Consensus 488 -~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n-----~~e~~EvRiaA~~---~lm~t~P~~~~l~~i 553 (574)
T smart00638 488 -GAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN-----RAEPPEVRMAAVL---VLMETKPSVALLQRI 553 (574)
T ss_pred -CCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC-----CCCChHHHHHHHH---HHHhcCCCHHHHHHH
Confidence 55556688999999999999887665544 23344322 2566776554421 222343655444433
No 136
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=32.97 E-value=1.5e+02 Score=35.05 Aligned_cols=81 Identities=17% Similarity=0.170 Sum_probs=67.5
Q ss_pred HhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCHHHHH
Q 039448 917 KLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDAVK 996 (1276)
Q Consensus 917 ~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~e~V~ 996 (1276)
=+++-++-|+...+--|-...|.+++..+..|+. .|.+-++.++-+|+.--+|...-+-.++-.+++++....|.+...
T Consensus 97 i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~ 175 (307)
T PF04118_consen 97 IYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFW 175 (307)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHH
Confidence 3455666777777777777899999999999998 999999999999999888666666669999999999999999665
Q ss_pred hc
Q 039448 997 AV 998 (1276)
Q Consensus 997 ~~ 998 (1276)
+.
T Consensus 176 ~~ 177 (307)
T PF04118_consen 176 QC 177 (307)
T ss_pred HH
Confidence 54
No 137
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.15 E-value=2.1e+03 Score=34.01 Aligned_cols=283 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred ccCcChHHHhhhhhhHHHHHHHHhhhc--CCCchhHHHHHHHHHHHHhccCCCCCcchhh------HHHHHHhhccCCch
Q 039448 97 LPKISVAVLKKKGDFLTDLVVRVVRLS--SVTAGAVASGLTSLSRLLTGRGRVNWSDVSQ------LYGVVLAFMTDSRL 168 (1276)
Q Consensus 97 ~p~vP~~vLr~kf~~~~~~l~~~l~~~--~~~~~~lRs~i~CL~~LL~aqd~~~W~~~~~------~~~~LL~f~~d~RP 168 (1276)
+.++|.-.|-..--+++..++-+|..- ......++.+..||-.+|+.--...-....+ .++.+-..-.||++
T Consensus 1061 ~~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~ 1140 (3550)
T KOG0889|consen 1061 IESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNS 1140 (3550)
T ss_pred hhhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCch
Q ss_pred hHHHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhccCCCchhHHHH
Q 039448 169 KVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECLPLMSTKYTAVI 248 (1276)
Q Consensus 169 KVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~~~~~~~~~~i 248 (1276)
.||+.+|+++..+-..- +..+.++...+- +++ .....+.-++.+|...---.
T Consensus 1141 ~VR~~~~~~L~~i~~~s---------~~~v~~L~~p~K------------------~~l-l~p~f~k~lr~~p~~~qig~ 1192 (3550)
T KOG0889|consen 1141 DVREFSQKLLRLISELS---------GKSVVKLLEPFK------------------DVL-LSPIFKKPLRALPFTIQIGH 1192 (3550)
T ss_pred HHHHHHHHHHHHHHHHc---------CCcHHHHHHHHH------------------HHH-hccccccccccCCHHHHhhh
Q ss_pred HHHHHHhhccCchhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCHh
Q 039448 249 LKYFKTLLELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINRE 328 (1276)
Q Consensus 249 ~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~~ 328 (1276)
....--.+.++..++|-+=.-..+..|..-..+...+.... |.-...|...+. ....=+...+++. +.......+-.
T Consensus 1193 vd~~~fC~~l~p~~f~~~~~l~~l~~~~~~La~~~~~~~~~-i~k~~~~k~~~~-l~~Lr~~ci~ll~-~~~~~~d~~~~ 1269 (3550)
T KOG0889|consen 1193 LDAITFCLSLGPCLFDFTEELYRLKRFLIALADAEEDELAT-IQKTSDYKNSSS-LVRLRVACIKLLA-ACMKLSDFRTP 1269 (3550)
T ss_pred HHHHHHHHHcCCcccCchHHHHHHHHHHHHhhhhhhhhhhh-hhcccccccccc-cccchhHHHHHHH-HHHhcccccch
Q ss_pred HHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH--hhchhHHhhhcccccccCCCcCCCChHHHHHHHHHHHhhh
Q 039448 329 ICSTKLPIVFNALKDILASEHEEAIFAATEALKNLINA--CIDESLIKQGVDQITNVNSDARKSGPTVIEKICATVESLL 406 (1276)
Q Consensus 329 ~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~--ci~~~~~~~~v~~~~~~~~~~~~~~~~~i~~i~~~~~~~L 406 (1276)
.=....++...++..-+.++++++...+..||+.+++. -.+.+.+..+..++ +..+...-. |
T Consensus 1270 ~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~~v~~~~~~~~ke~lq~~lrpl--------------L~~l~d~~~--l 1333 (3550)
T KOG0889|consen 1270 QHAELREKIIAVFFKSLYKRSSELIEVALEGLRKVLAQDVKLPKELLQSHLRPL--------------LMNLSDHNN--L 1333 (3550)
T ss_pred hhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHHhhhhccccccHHHHHhhHHHH--------------HHhhhHhhh--h
Q ss_pred hcchhhhHHHHHHHHHHHHH
Q 039448 407 DYHYSAVWDMAFQIVSTMFD 426 (1276)
Q Consensus 407 ~~~y~~aw~~vL~vl~~lf~ 426 (1276)
+...-..-...+.++..+|+
T Consensus 1334 sv~~l~~ls~l~~ll~~~f~ 1353 (3550)
T KOG0889|consen 1334 SVPGLEGLSRLLRLLINYFK 1353 (3550)
T ss_pred hHHHHHHHHHHHHHHHHHHH
No 138
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=30.52 E-value=6.9e+02 Score=28.95 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=42.3
Q ss_pred HhcCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchh
Q 039448 323 YSINREICSTKLPIVFNALKDILASEHEEAIFAATEALKNLINACIDES 371 (1276)
Q Consensus 323 ~~~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~ 371 (1276)
..++......++|.++..+..++....+++...+.+||..++..|-+..
T Consensus 106 ~~~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~ 154 (282)
T PF10521_consen 106 SQLDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAE 154 (282)
T ss_pred hcCCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhh
Confidence 3456666678999999999999999999999999999999999887766
No 139
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=30.27 E-value=9.8e+02 Score=28.31 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHhccCCCCCCc----ccHHH
Q 039448 803 KRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNR-AYDVLVQIGRAFGDEENGGGK----ENLYQ 877 (1276)
Q Consensus 803 k~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~-A~~lLv~mg~~~~~~~~~~~~----~~l~e 877 (1276)
|+.=|+.+...|.+.+. .+.-...|++.++.=|+.=.+..+..+|+. ...++-.+.+++.+.-.+.-+ .-++.
T Consensus 44 KkeIL~Li~t~i~~~~~--~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~ 121 (319)
T PF08767_consen 44 KKEILKLIETFISKAED--PEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC 121 (319)
T ss_dssp HHHHHHHHHHHHHT-S---HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 55556666666654331 111235677777655655668777777764 456666777777664333322 23333
Q ss_pred HHHHHhhhccCCChhHHHHHHHHHHHHHHHh-hhhhH---H-HHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcCh
Q 039448 878 FFNMVAGGLAGESPHMISAAVKGLARLAYEF-SDLVS---N-VYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHA 950 (1276)
Q Consensus 878 f~~mV~aGLaG~tphMiSatI~ALsrLl~ef-~d~i~---~-~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~ 950 (1276)
.+.||...+.. -|...-+=..=|..++..+ .-+.. . ...+++++..-+.+.+|||...+|-.+.-++.....
T Consensus 122 Tl~MI~~d~~~-yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 122 TLPMINKDFEE-YPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHSSTSSS-SHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-ChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 44566655554 4776666555566666543 33322 1 336678888899999999999998877766655544
No 140
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.19 E-value=2e+03 Score=32.02 Aligned_cols=435 Identities=16% Similarity=0.093 Sum_probs=214.0
Q ss_pred hHHhHHHHHHHHHHHHHHhhCCCC-CChH--hHHH--HHHhhhhhhhCCCC--CCCCchhHHHHHHHhhhhccCcChHHH
Q 039448 33 QEEHQHLCAAIGAMSQELKDQNLP-LTPI--SYFG--ATCSSLDRLLSSPD--PDRSSHIIGSLSTILSLLLPKISVAVL 105 (1276)
Q Consensus 33 ~~~~k~~~avLaAv~e~i~~q~~~-~t~t--~YFa--Alms~L~~~~~~~~--~~~~~~~~~a~lyLL~lv~p~vP~~vL 105 (1276)
..+-||.+.++.=..|.|+.-.+. .-.+ +-|. |+.+.|+-...... .. .++-.-...|.|-+.-=..|.|.+
T Consensus 814 ~v~~k~~~~ile~~~esi~~sk~~r~qsV~~~a~t~~al~s~lk~l~e~~~~~~l-g~e~v~~~~~~l~~~sl~~~~p~~ 892 (2067)
T KOG1822|consen 814 HVNNKIRLSILEHFPESIKQSKSARQQSVQVNAVTWQALLSALKYLAEFKGATSL-GPEEVRSSALTLIVNSLINPNPKL 892 (2067)
T ss_pred CccHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHHHHHHHHHHHHHhccccccc-CHHHHHHHHHHHHhhhhccCChHH
Confidence 345678888888888888655432 3333 4455 77777776544321 21 455566666666666667788888
Q ss_pred hhhhhhHHHHHHHHhhhc---------------CCCchhHHHHH-HHHHHHHhccC-CCCCcchhhHHHHHHhhccCCch
Q 039448 106 KKKGDFLTDLVVRVVRLS---------------SVTAGAVASGL-TSLSRLLTGRG-RVNWSDVSQLYGVVLAFMTDSRL 168 (1276)
Q Consensus 106 r~kf~~~~~~l~~~l~~~---------------~~~~~~lRs~i-~CL~~LL~aqd-~~~W~~~~~~~~~LL~f~~d~RP 168 (1276)
|-.-++...-++.+..+. +...|..|.+. --|++|.+--- ...-....+++..||.|..|+.|
T Consensus 893 rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~ 972 (2067)
T KOG1822|consen 893 RCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTS 972 (2067)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCC
Confidence 777655555555444332 35567777543 22333333211 11222234588999999999988
Q ss_pred -hHHHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHH-------HHHHhhccCC
Q 039448 169 -KVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVL-------DALKECLPLM 240 (1276)
Q Consensus 169 -KVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L-------~lLk~~l~~~ 240 (1276)
+|+..+-++..-|+.+- +|..-...+.+-..|...+.....+... ..+..=.++ .++..+.|.+
T Consensus 973 p~VqtwSL~al~~i~~s~--~p~~~~~ve~tlsl~~~lLls~p~~~~e------v~q~~~R~~~~~~~~~alittlgpeL 1044 (2067)
T KOG1822|consen 973 PVVQTWSLHALALILDSS--GPMFRVLVEPTLSLCLKLLLSVPTSHVE------VHQCYNRCFNGDDDEDALITTLGPEL 1044 (2067)
T ss_pred chhhhhHHHHHHHHHcCC--CceehhhHHHHHHHHHHHcCCCCcchhh------hhhhhccccccchhHHHHHHhccccc
Confidence 99999999999998642 2222222222222333333211000000 000000011 2334444555
Q ss_pred CchhH--------HHHHHHHHHhhccCchhHHHHHHHHHHHH--hcCCCCCCCHHHHHHHHHHhcc--cCCCCC-----C
Q 039448 241 STKYT--------AVILKYFKTLLELRQPLVTRRVTDALNVI--CLHPTLEVSAEALLDLLCSLAL--SVSTNE-----T 303 (1276)
Q Consensus 241 ~~~~~--------~~i~~~ll~Ll~l~n~~lt~~~~~~~~~l--f~~~~~~l~~~~~~~li~aL~~--~~~~~~-----~ 303 (1276)
++..- ..+.-.|..++.-+++++..+++.||..+ |.+. .+.-+-+.--++.+.. |+-... .
T Consensus 1045 ~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr--~~n~~~lV~~L~~~l~s~~~i~r~~~~~cl 1122 (2067)
T KOG1822|consen 1045 GPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPR--HVNLDSLVLQLCSLLSSSYLILRRASFSCL 1122 (2067)
T ss_pred CCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcch--hccHHHHHHHHHHHhcchhhhhhhhHHhhh
Confidence 44442 34555666666678999999999999765 7666 4444332222222111 110000 0
Q ss_pred chhhHHHHHHHHHHHHHHH----HhcCHhHHhh---hhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHh--
Q 039448 304 SADAMTFTARLLNVGMIKI----YSINREICST---KLPIVFNALKDILASEHEEAIFAATEALKNLINACIDESLIK-- 374 (1276)
Q Consensus 304 ~~~~l~~~~~vl~~a~~~l----~~~~~~~c~~---~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~-- 374 (1276)
-+...--...+.+-|..-. ++.+++.-.. .|+...-.+.+ .......+.-.-++|..++++--++.+-.
T Consensus 1123 rql~~Re~sev~e~a~~L~~~~~~e~~~d~~~~pe~gLeg~l~~mld--~e~d~~l~~~I~~tl~~~~~~~~~~~ls~Wl 1200 (2067)
T KOG1822|consen 1123 RQLVQREASEVCEYAQLLAKTLAVETSPDANIRPEAGLEGALFIMLD--TETDNKLLKNILETLSRMLNSLADELLSSWL 1200 (2067)
T ss_pred hHHhHHHHHHHHHHHHHhhhhhhhhhChhhhcCccccchHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 0000000001111121111 2333322211 22322222212 23334444555556666555544443210
Q ss_pred -------h---h---cccccc-cCCCc--CCC-ChHHHHHHHHHHHh--hhhcchhhhHH---HHHHHHHHHHHhhcccc
Q 039448 375 -------Q---G---VDQITN-VNSDA--RKS-GPTVIEKICATVES--LLDYHYSAVWD---MAFQIVSTMFDKLGTYS 432 (1276)
Q Consensus 375 -------~---~---v~~~~~-~~~~~--~~~-~~~~i~~i~~~~~~--~L~~~y~~aw~---~vL~vl~~lf~~lg~~~ 432 (1276)
+ . .....+ ++.+. ..+ ++..+ ..++.. -.....+..|+ ....++-.++..|. ..
T Consensus 1201 ~l~k~~l~~~~~~s~~~e~s~~kd~~~~~~~~~dDdt~---~~t~~~~~~s~p~~qprW~Trvfaa~cv~r~i~~c~-a~ 1276 (2067)
T KOG1822|consen 1201 MLLKDLLQAAEDFSASKELSGEKDEEDEEQESGDDDTV---LTTVSRTDDSKPLVQPRWPTRVFAAECVLRIINVCE-AV 1276 (2067)
T ss_pred HHHHHHHHHhhhccccccccccccccchhhcccchhhH---HhhhccccccCCccccccchHHHHHHHHHHHhhhhh-hh
Confidence 0 0 011100 00000 011 12222 233322 25677788998 55566666666676 22
Q ss_pred hhhHHHHHHHHHhhhcCCCCCCcchhHHHHHHHHHHHhcChhhHhhcccCcc
Q 039448 433 SYFMRGALKNLADMQNLPDEDFPYRKQLHECVGSAVGSMGPETFLCLLPLKL 484 (1276)
Q Consensus 433 ~~~l~~~L~~l~~lr~~~~~~f~~~~~ld~~iGaAi~amGPe~vL~~lPLnl 484 (1276)
...+.-.+-.=..+++....+|-...-.|.+--+.+.++-+-.-|++.||..
T Consensus 1277 ~~h~d~~la~e~k~~n~e~~d~LvlhlsDLirmsFmaaT~~n~~Lrl~Gl~~ 1328 (2067)
T KOG1822|consen 1277 SAHFDMALASEHKLENLERNDYLVLHLSDLIRMSFMAATSDNSQLRLAGLES 1328 (2067)
T ss_pred hhhhhHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhcCchhhhhhccHHH
Confidence 2233322222234454311246666677888899999999999999999875
No 141
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.11 E-value=1.4e+03 Score=30.17 Aligned_cols=286 Identities=16% Similarity=0.143 Sum_probs=133.1
Q ss_pred hhHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHH
Q 039448 243 KYTAVILKYFKTLLELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKI 322 (1276)
Q Consensus 243 ~~~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l 322 (1276)
...-.+|+.|.-.+...|+.+.-.+.+.|-.+-.-... +.......+...|+...... +.+..++ |
T Consensus 235 ~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~----~e~qyva---------L 300 (734)
T KOG1061|consen 235 REAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLSSE----SEIQYVA---------L 300 (734)
T ss_pred hhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeeccc----chhhHHH---------H
Confidence 34556777777777777777777777766443222211 22222333333333322221 1222221 1
Q ss_pred HhcCHhHHhhhhhHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCCCChHHHHHHH
Q 039448 323 YSINREICSTKLPIVFNALKDILAS---EHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGPTVIEKIC 399 (1276)
Q Consensus 323 ~~~~~~~c~~~LP~~f~~~~~~l~S---~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~~~~~~i~~i~ 399 (1276)
. +-.+-+.+.|..|..-...|-. |.--|-..=-+||..+...-.=++++.+.... ....+.+++.+.+
T Consensus 301 r--Ni~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eY-------atevD~~fvrkaI 371 (734)
T KOG1061|consen 301 R--NINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEY-------ATEVDVDFVRKAV 371 (734)
T ss_pred h--hHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHh-------hhhhCHHHHHHHH
Confidence 1 2234467788877765544432 22122233334444443333322222221100 0122446666666
Q ss_pred HHHHhhhhcchhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhh-hcCCCCCCcchhHHHHHHHHHHHhcChhhHhh
Q 039448 400 ATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADM-QNLPDEDFPYRKQLHECVGSAVGSMGPETFLC 478 (1276)
Q Consensus 400 ~~~~~~L~~~y~~aw~~vL~vl~~lf~~lg~~~~~~l~~~L~~l~~l-r~~~~~~f~~~~~ld~~iGaAi~amGPe~vL~ 478 (1276)
..+- -+.+++. -|..+..++-.++ +-.-.+....++..+.++ |..|+. ++.+..
T Consensus 372 raig-~~aik~e-~~~~cv~~lLell---~~~~~yvvqE~~vvi~dilRkyP~~--------------------~~~vv~ 426 (734)
T KOG1061|consen 372 RAIG-RLAIKAE-QSNDCVSILLELL---ETKVDYVVQEAIVVIRDILRKYPNK--------------------YESVVA 426 (734)
T ss_pred HHhh-hhhhhhh-hhhhhHHHHHHHH---hhcccceeeehhHHHHhhhhcCCCc--------------------hhhhhh
Confidence 6663 3444543 3454544444444 433334455555555553 443311 355667
Q ss_pred cccCccccCcccccccchhhhhhhccCCCChHhHHHHHHHHHHHHHHHhHHhhhhccchhhhhHHHHHHHHHhhhhCCCC
Q 039448 479 LLPLKLEASDLSEVNVWLFPILKQYIIGARLNFFMEKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLPSFCN 558 (1276)
Q Consensus 479 ~lPLnl~~~~~~~~RaWLLPlLr~~i~~t~L~fF~~~~lPLa~~~~~k~~~~~~~~~~~~ak~~~tL~~QlWsLLPgFC~ 558 (1276)
+++.+++.-+-+..|+-|+=||++|.. .+.-..+++=-+.+.+++.-.+ +--+|-.-.=.+|=.+|+
T Consensus 427 ~l~~~~~sl~epeak~amiWilg~y~~--~i~~a~elL~~f~en~~dE~~~-----------Vql~LLta~ik~Fl~~p~ 493 (734)
T KOG1061|consen 427 ILCENLDSLQEPEAKAALIWILGEYAE--RIENALELLESFLENFKDETAE-----------VQLELLTAAIKLFLKKPT 493 (734)
T ss_pred hhcccccccCChHHHHHHHHHHhhhhh--ccCcHHHHHHHHHhhcccchHH-----------HHHHHHHHHHHHHhcCCc
Confidence 778887654444567777777888753 2222233333333333332211 112333334445555553
Q ss_pred CCcchhhhHHHHHHHHHHHhc--cCcccHHHHHHHHHHH
Q 039448 559 YPVDTAESFMDLAGVLCSALH--EENDIRGIICSSLQNL 595 (1276)
Q Consensus 559 ~P~D~~~sF~~lA~~L~~~L~--~~~~LR~~Ic~aLr~L 595 (1276)
... ..+..+|..... ++||+|.-..-=.|-|
T Consensus 494 ---~tq---~~l~~vL~~~~~d~~~~dlrDr~l~Y~RlL 526 (734)
T KOG1061|consen 494 ---ETQ---ELLQGVLPLATADTDNPDLRDRGLIYWRLL 526 (734)
T ss_pred ---cHH---HHHHHHHhhhhccccChhhhhhHHHHHHHh
Confidence 222 122233333333 5899999888766644
No 142
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=30.02 E-value=1.9e+02 Score=30.30 Aligned_cols=65 Identities=14% Similarity=0.278 Sum_probs=43.7
Q ss_pred hhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHH--HHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 039448 919 LPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHL--ASMVEGLLKWQDDTKNQFKSKIKLLLEM 985 (1276)
Q Consensus 919 l~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L--~~lv~~Ll~ws~d~k~hfR~KVr~Iler 985 (1276)
++.+.-.|+|.++++|-++++|.-.+ ..+.-.-++.| |.++..+..|.......||.--+..+++
T Consensus 101 ~plii~~lssp~e~tv~sa~~~l~~l--~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 101 LPLIIFVLSSPPEITVHSAALFLQLL--EFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDK 167 (173)
T ss_pred CceEEeecCCChHHHHHHHHHHHHHh--cCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44455678999999999999998643 44443333433 8899999999955445555444444433
No 143
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=29.57 E-value=9.2e+02 Score=31.71 Aligned_cols=118 Identities=15% Similarity=0.251 Sum_probs=78.7
Q ss_pred HHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHH--HhhhHHHH-HhccCCHHHHHHHHHHHHHHHhhcChhH
Q 039448 876 YQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVY--KLLPSTFL-LLQRKNREIIKANLGLLKVLVAKSHAEG 952 (1276)
Q Consensus 876 ~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~--~ll~~v~l-lL~s~~REIvKsaLgFvKV~v~~lp~~~ 952 (1276)
.+||..+-..+.. |+-.-.+++-|+.+|-...-.+-.+. .++.+++. |+...+--||-+||-.+=+++=.+|. .
T Consensus 69 K~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~-~ 145 (668)
T PF04388_consen 69 KHLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPS-S 145 (668)
T ss_pred HHHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccc-h
Confidence 5788888777775 56677777777888776544333322 56777765 45567777788888888888888874 6
Q ss_pred HHHHHHHHHHH---HhhcchhhH--------HHHHHHHHHHHHHHHHhcCHHHHHhcCCHHHHH
Q 039448 953 LQIHLASMVEG---LLKWQDDTK--------NQFKSKIKLLLEMLVKKCGLDAVKAVMPEEHMK 1005 (1276)
Q Consensus 953 l~~~L~~lv~~---Ll~ws~d~k--------~hfR~KVr~IlerLIRKfG~e~V~~~~Pee~~K 1005 (1276)
+.+|||.|+.- |+.|....- -|+..-+..+|.+ +++++|=-...
T Consensus 146 l~~~L~~Lf~If~Rl~~W~~~~~~~~~~~~~~~l~~~~~~lFt~---------LYGlyP~NF~~ 200 (668)
T PF04388_consen 146 LGPHLPDLFNIFGRLLSWERKNPGSVPEVYLIHLQASVYALFTR---------LYGLYPCNFLS 200 (668)
T ss_pred hhHHHHHHHHHHHHHHHcccCCCCCccccccccchhhHHHHHHH---------HHhcccchHHH
Confidence 68999998876 677875311 2556556655554 56677744333
No 144
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=29.36 E-value=1.2e+03 Score=29.25 Aligned_cols=71 Identities=11% Similarity=0.181 Sum_probs=52.3
Q ss_pred HHHHHHHhhhcCCCchhHHHHHHHHHHHHhccCCCCCcc--hhhHHHHHHhhccCCchhHHHHHHHHHHHHHhc
Q 039448 113 TDLVVRVVRLSSVTAGAVASGLTSLSRLLTGRGRVNWSD--VSQLYGVVLAFMTDSRLKVRRQSHLCVREILLS 184 (1276)
Q Consensus 113 ~~~l~~~l~~~~~~~~~lRs~i~CL~~LL~aqd~~~W~~--~~~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~ 184 (1276)
-.+|.-+|..++ ..+.+--.|.||+.|..+..+..... +...++.+=.+--|..|-||-.|---+..|...
T Consensus 108 ~r~l~~~l~~e~-~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t 180 (728)
T KOG4535|consen 108 HRCLLLALVAES-SSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVST 180 (728)
T ss_pred HHHHHHHHHHhc-CchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhc
Confidence 344555555443 46678889999999999988776653 344777777788889999999988877777763
No 145
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.05 E-value=1.1e+03 Score=28.97 Aligned_cols=127 Identities=18% Similarity=0.192 Sum_probs=91.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHH-hccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHh-hhh
Q 039448 834 LTEIILALKEANKRTRNRAYDVLVQIGRA-FGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEF-SDL 911 (1276)
Q Consensus 834 lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~-~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef-~d~ 911 (1276)
+-|++-=+|..|.+.|+.|..-|...-.. +. .-...+.+.+.-+.++..-.+....-+.+..+-.++|-- .+.
T Consensus 60 lkeLl~qlkHhNakvRkdal~glkd~l~s~p~-----~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~ 134 (393)
T KOG2149|consen 60 LKELLSQLKHHNAKVRKDALNGLKDLLKSHPA-----ELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED 134 (393)
T ss_pred HHHHHhhhcCchHhhhHHHHHHHHHHHHhChH-----HHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh
Confidence 45666678999999999998877765443 11 123456677777777777666666666666666666655 333
Q ss_pred hHH-HHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhh
Q 039448 912 VSN-VYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLK 966 (1276)
Q Consensus 912 i~~-~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ 966 (1276)
++. +.-+++.+..-|+.-..||.--++.|.-+++...|...+..+.. ++++...
T Consensus 135 ~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~~-il~n~~d 189 (393)
T KOG2149|consen 135 QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYASK-ILENFKD 189 (393)
T ss_pred hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHHH-HHHHHHH
Confidence 343 34556778889999999999999999999999999888887766 6655433
No 146
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.02 E-value=1.3e+03 Score=30.62 Aligned_cols=194 Identities=17% Similarity=0.134 Sum_probs=103.7
Q ss_pred HHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHH-----HHHHHHh----
Q 039448 746 LFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDC-----LYFIIAH---- 816 (1276)
Q Consensus 746 Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~c-----L~~lv~~---- 816 (1276)
-.+...+++.+..+.++-.|-|+|.++.-.+..-+..-.-||..++.+.-.++++.|.-.+|+. +..|+..
T Consensus 283 avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~f 362 (865)
T KOG1078|consen 283 AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSF 362 (865)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 3455667778888999999999999998877666555445567777666666666666666652 1111111
Q ss_pred ccCCChH---------------------------------HHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 039448 817 VSKDDSE---------------------------------QRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAF 863 (1276)
Q Consensus 817 l~~~~~~---------------------------------~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~ 863 (1276)
.+.-.++ +.-.+|..++ -++|+..=+.|...++.+..-|-+.-+-+
T Consensus 363 v~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~ai-vd~Ii~iie~~pdsKe~~L~~LCefIEDc 441 (865)
T KOG1078|consen 363 VSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAI-VDAIIDIIEENPDSKERGLEHLCEFIEDC 441 (865)
T ss_pred HHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHH-HHHHHHHHHhCcchhhHHHHHHHHHHHhc
Confidence 1111100 0011222222 23444444455555555544433322111
Q ss_pred cc------------CCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCH
Q 039448 864 GD------------EENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNR 931 (1276)
Q Consensus 864 ~~------------~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~R 931 (1276)
.- .++|- ...=..|+.-|+.-+.=++.+..+|++.||+....+-..+.+.+.-+| -.++-...-
T Consensus 442 e~~~i~~rILhlLG~EgP~-a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~sI~vll---kRc~~D~Dd 517 (865)
T KOG1078|consen 442 EFTQIAVRILHLLGKEGPK-APNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLPSILVLL---KRCLNDSDD 517 (865)
T ss_pred cchHHHHHHHHHHhccCCC-CCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccccHHHHH---HHHhcCchH
Confidence 00 11221 111225666666656667789999999999987733223333333333 345666777
Q ss_pred HHHHHHHHHHHHH
Q 039448 932 EIIKANLGLLKVL 944 (1276)
Q Consensus 932 EIvKsaLgFvKV~ 944 (1276)
||...|==+++++
T Consensus 518 evRdrAtf~l~~l 530 (865)
T KOG1078|consen 518 EVRDRATFYLKNL 530 (865)
T ss_pred HHHHHHHHHHHHh
Confidence 7766654444443
No 147
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=25.97 E-value=5.9e+02 Score=35.48 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=50.8
Q ss_pred HhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCCCChHHHHHHHHHHHhhhhcc
Q 039448 330 CSTKLPIVFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGPTVIEKICATVESLLDYH 409 (1276)
Q Consensus 330 c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~~~~~~i~~i~~~~~~~L~~~ 409 (1276)
-.+++|++|. |+-|++..++.+|+.|+-.+....--+-++ .+++++.-.+..+-++.
T Consensus 814 ~~~~l~~l~~----~~~s~~~a~r~~~ar~i~~~~k~~~~e~m~-------------------~v~~~~~~ll~~~~~~~ 870 (1549)
T KOG0392|consen 814 LGSLLPRLFF----FVRSIHIAVRYAAARCIGTMFKSATRETMA-------------------TVINGFLPLLGDLDKFV 870 (1549)
T ss_pred hhhhhhHHHH----hcccchHHHHHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHhhhccchhhHh
Confidence 5577777654 778999999999999998765432222221 23444444444444444
Q ss_pred hhhhHHHHHHHHHHHHHhhcccchhhHHHH
Q 039448 410 YSAVWDMAFQIVSTMFDKLGTYSSYFMRGA 439 (1276)
Q Consensus 410 y~~aw~~vL~vl~~lf~~lg~~~~~~l~~~ 439 (1276)
-+..-.+++.++..+-.+-=....|++.+.
T Consensus 871 ~r~~a~e~~~~l~~~l~~~l~~~~~Llv~p 900 (1549)
T KOG0392|consen 871 RRQGADELIELLDAVLMVGLVPYNPLLVVP 900 (1549)
T ss_pred hhhhHHHHHHHHHHhhcccccccceeehhh
Confidence 455666777666665444333333555443
No 148
>PF10487 Nup188: Nucleoporin subcomplex protein binding to Pom34; InterPro: IPR018864 This is one of the many peptides that make up the nucleoporin complex (NPC), and is found across eukaryotes []. The Nup188 subcomplex (Nic96p-Nup188p-Nup192p-Pom152p) is one of at least six that make up the NPC, and as such is symmetrically localised on both faces of the NPC at the nuclear end, being integrally bound to the C terminus of Pom34p [].
Probab=25.73 E-value=1.9e+03 Score=30.15 Aligned_cols=346 Identities=15% Similarity=0.197 Sum_probs=0.0
Q ss_pred hHHhhccCCCChHHhHHHHHHHHHHHHHHhhCCCCCChHhHHHHHHhhhhhhhCCCCCCCCchhHHHHHHHhhhhccCcC
Q 039448 22 SSILSRFSSSAQEEHQHLCAAIGAMSQELKDQNLPLTPISYFGATCSSLDRLLSSPDPDRSSHIIGSLSTILSLLLPKIS 101 (1276)
Q Consensus 22 ~~i~~r~~~S~~~~~k~~~avLaAv~e~i~~q~~~~t~t~YFaAlms~L~~~~~~~~~~~~~~~~~a~lyLL~lv~p~vP 101 (1276)
+.+...+.......+..+..|+.=++.+++...+...+.+-+..+-..++. +
T Consensus 530 e~~~~~~~~~d~~~~~~v~~ii~Ll~~l~~~~~~~~~~~~iL~~~S~~l~~---------~------------------- 581 (931)
T PF10487_consen 530 ENLLKSYSELDSLQDERVAEIIDLLASLLSSDNSIEDSKEILEEASAYLDH---------S------------------- 581 (931)
T ss_pred HHHHhcccccCcchHHHHHHHHHHHHHHHccCcchhHHHHHHHHHhhcccc---------C-------------------
Q ss_pred hHHHhhhhhhHHHHHHHHhhhc--CCCchhHHHHHHHHHHHHhccCCCCCcchhh--HHHHHHhhccCCchhHHHHHHHH
Q 039448 102 VAVLKKKGDFLTDLVVRVVRLS--SVTAGAVASGLTSLSRLLTGRGRVNWSDVSQ--LYGVVLAFMTDSRLKVRRQSHLC 177 (1276)
Q Consensus 102 ~~vLr~kf~~~~~~l~~~l~~~--~~~~~~lRs~i~CL~~LL~aqd~~~W~~~~~--~~~~LL~f~~d~RPKVRK~Aq~a 177 (1276)
++.+.+..+++.. +.+-.++.+++.||..|+..+....|++++. .+
T Consensus 582 ---------DIisvI~~ile~~L~~~~v~ll~scl~fL~aL~p~~p~rVW~~L~rS~LL--------------------- 631 (931)
T PF10487_consen 582 ---------DIISVIFDILERSLQSRNVELLTSCLRFLTALLPIFPGRVWSYLSRSSLL--------------------- 631 (931)
T ss_pred ---------cHHHHHHHHHHHHcccCChHHHHHHHHHHHHHhccChHHHHHHHhhCcCc---------------------
Q ss_pred HHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhc-------cCCCchhHHHHHH
Q 039448 178 VREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECL-------PLMSTKYTAVILK 250 (1276)
Q Consensus 178 v~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l-------~~~~~~~~~~i~~ 250 (1276)
..-.....+....-.++...|.= .-++-++.|...++ ..+|......+..
T Consensus 632 -------------~~~g~~G~~s~ilgs~E~~~G~Y----------~ftls~lkL~~~Lv~~als~~~~~~~~~~~~vL~ 688 (931)
T PF10487_consen 632 -------------GSDGKGGLASVILGSIEMVSGRY----------DFTLSLLKLFSALVDDALSSNSGVPSKTKSVVLP 688 (931)
T ss_pred -------------ccCCccchHHHhhhhhhccCCcc----------hHHHHHHHHHHHHHHHhhccCCCCchhHHHHHHH
Q ss_pred HHHHhhccCchhHHHHHHHHHHHH----hcCCCCCCCHHH-HHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHh-
Q 039448 251 YFKTLLELRQPLVTRRVTDALNVI----CLHPTLEVSAEA-LLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYS- 324 (1276)
Q Consensus 251 ~ll~Ll~l~n~~lt~~~~~~~~~l----f~~~~~~l~~~~-~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~- 324 (1276)
. ++....++|+.. |.....-.-... +..+++.+..+.+......+.-.-++.++..+-..+..
T Consensus 689 ~-----------~~~~l~eVfes~~~Wrf~~~~qR~eIg~~i~~~f~~IL~~~ygi~~~~~~~~klt~vl~~aa~~il~~ 757 (931)
T PF10487_consen 689 K-----------IVFHLVEVFESFSTWRFNSPGQRFEIGRSILSIFSKILYYVYGIDEDSSPDSKLTSVLAPAAQYILDS 757 (931)
T ss_pred H-----------HHHHHHHHhhcCCceeCCChhhHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhHHhhhHHHHHHHHH
Q ss_pred -cCHhHHhhhhhH-HHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCCC--ChHHHHH-HH
Q 039448 325 -INREICSTKLPI-VFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKS--GPTVIEK-IC 399 (1276)
Q Consensus 325 -~~~~~c~~~LP~-~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~~--~~~~i~~-i~ 399 (1276)
+-+.......+. +.+++..-...+.........+-+...++.|..=.-..-.+... .. .|+.+|+ ++
T Consensus 758 fl~~~s~~~~~~~pll~~l~~~~~~~~~~~~~~~~~~~~~~v~~sl~~~~~Ll~~r~~--------~~~l~PS~LE~~Lf 829 (931)
T PF10487_consen 758 FLSPSSSSQRAMNPLLSILTSGLNTPLSSLGDRSGQLLSRLVQSSLSFATLLLRIRSY--------LNLLPPSALEKQLF 829 (931)
T ss_pred HccCCCchhhcchHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh--------ccCCCchHHHHHHH
Q ss_pred HHHHhhhh-----cchhhhHHHHHHHHHHHHH------------hhcccchhhHHHHHHHHHhhhcCCCCCCcchhHHHH
Q 039448 400 ATVESLLD-----YHYSAVWDMAFQIVSTMFD------------KLGTYSSYFMRGALKNLADMQNLPDEDFPYRKQLHE 462 (1276)
Q Consensus 400 ~~~~~~L~-----~~y~~aw~~vL~vl~~lf~------------~lg~~~~~~l~~~L~~l~~lr~~~~~~f~~~~~ld~ 462 (1276)
...-.+.+ ..|..--..++.++.++.. -||......+...+ +.+|.+ |-++...+..+=+
T Consensus 830 ~~s~~Lv~~~a~~~~~~~~~~~il~lL~sl~~~~~~~e~PSLL~~LG~~~s~~fl~~l--l~~L~~-p~~d~~l~~aIw~ 906 (931)
T PF10487_consen 830 KASPDLVDLYASYPSLPRLRVPILELLTSLVSADWSSEPPSLLGHLGSEHSKSFLDSL--LSDLDN-PFEDYNLKVAIWE 906 (931)
T ss_pred hcchHHHHHHhcccchhhHHHHHHHHHHHHhcCccCCCCCcHHHHcCChhHHHHHHHH--HHHhCC-ccCCHHHHHHHHH
Q ss_pred HHHHHHHh
Q 039448 463 CVGSAVGS 470 (1276)
Q Consensus 463 ~iGaAi~a 470 (1276)
.++++|+.
T Consensus 907 F~saiv~~ 914 (931)
T PF10487_consen 907 FFSAIVEK 914 (931)
T ss_pred HHHHHHcc
No 149
>PF02944 BESS: BESS motif; InterPro: IPR004210 The BESS domain has been named after the three proteins that originally defined the domain: BEAF (Boundary element associated factor 32) [], Suvar(3)7 [] and Stonewall []). The BESS domain is 40 amino acid residues long and is predicted to be composed of three alpha helices, as such it might be related to the myb/SANT HTH domain. The BESS domain directs a variety of protein-protein interactions, including interactions with itself, with Dorsal, and with a TBP-associated factor. It is found in a single copy in Drosophila proteins and is often associated with the MADF domain [, , ]. Proteins known to contain a BESS domain include: Drosophila Boundary element associated factor 32 (BEAF-32). Drosophila Suppressor of variegation protein 3-7 (Su(var)3-7), which could play a role in chromosome condensation. Drosophila Ravus, which is homologous to the C-terminal part of Su(var)3-7 []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation. Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3). It functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. ; GO: 0003677 DNA binding
Probab=24.68 E-value=1.5e+02 Score=23.73 Aligned_cols=33 Identities=27% Similarity=0.269 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHH
Q 039448 953 LQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEM 985 (1276)
Q Consensus 953 l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~Iler 985 (1276)
...+|-+++|.+=+.+...|..||.+|-.|+..
T Consensus 4 d~~Fl~Sl~p~~k~L~~~~k~~~k~~i~~ll~e 36 (37)
T PF02944_consen 4 DELFLLSLLPHMKRLPPKQKLKFKMKILQLLFE 36 (37)
T ss_pred HHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 346788899999999999999999999888753
No 150
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=24.04 E-value=3.8e+02 Score=30.75 Aligned_cols=104 Identities=13% Similarity=0.259 Sum_probs=66.3
Q ss_pred HHhhhhcCCchhhhhHHHHHHHHHHhcC--cchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHH
Q 039448 749 AIKPALQDDEGLIQKKAYKVLSTILRKC--DGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRR 826 (1276)
Q Consensus 749 ~~~~~l~~~d~~~QKKAYk~L~~i~~~~--~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~ 826 (1276)
.+...+.++++.++.+|...|..+.... ..-+..++..+.+.+... .+.+.-+ +..|+.|. +++-.++ .
T Consensus 58 lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~s~--~lns~~Q---~agLrlL~-nLtv~~~---~ 128 (254)
T PF04826_consen 58 LIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETVSS--PLNSEVQ---LAGLRLLT-NLTVTND---Y 128 (254)
T ss_pred HHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHhcC--CCCCHHH---HHHHHHHH-ccCCCcc---h
Confidence 4556677888899999999888776532 122445555555544332 1222223 44555443 3333332 3
Q ss_pred hhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 039448 827 SYILSSFLTEIILALKEANKRTRNRAYDVLVQIGR 861 (1276)
Q Consensus 827 ~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~ 861 (1276)
.+++...+|..+=..-..|+++|..+..+|+.++.
T Consensus 129 ~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 129 HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 56677788888777788899999999999998765
No 151
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=23.76 E-value=1.8e+03 Score=29.21 Aligned_cols=157 Identities=14% Similarity=0.179 Sum_probs=96.3
Q ss_pred HHHHHHhhHhHHHHHHHhhcCCCccccccHHHHHHHhh----ccCCHHHHHHHHHHHH-----------HHHHHHHHHhc
Q 039448 634 LNVLKSSARELLSILSRIFLESAKDEGGCLQSTIGDFA----SIADKEIVTRLFKRTM-----------HRLLEATQEAG 698 (1276)
Q Consensus 634 l~~L~~~A~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~----sI~~~~~l~~~f~~~~-----------~kL~~~~~~~~ 698 (1276)
-++|+.|+..++|.+-.=|.... -.+.+..+|.... -++.|..+..|..+.. ..+.+-.+
T Consensus 235 f~hls~~~aeli~~isde~n~~~--l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLd--- 309 (1128)
T COG5098 235 FAHLSGLIAELIPSISDELNRCA--LKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLD--- 309 (1128)
T ss_pred HHHHHHHHHHHHHHhHHHhhhhh--hhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhc---
Confidence 36889999999999877765421 1222333333322 2345566666655331 12222220
Q ss_pred ccccccCCCcccccCCCCCCCchhhHhHHHHHHHHHcCCCChh---------hHHHHHHHHhhhhcCCchhhhhHHHHHH
Q 039448 699 KTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLNAK---------EIDVLFVAIKPALQDDEGLIQKKAYKVL 769 (1276)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv~~l~~~---------~~~~Lf~~~~~~l~~~d~~~QKKAYk~L 769 (1276)
+..-+.||.++++..-+|.++..+ .+..|...+..-+.+..+-..-||..++
T Consensus 310 -------------------ses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~ 370 (1128)
T COG5098 310 -------------------SESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVL 370 (1128)
T ss_pred -------------------ccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 023367999999998888664332 3455555555666788899999999999
Q ss_pred HHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHH
Q 039448 770 STILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIA 815 (1276)
Q Consensus 770 ~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~ 815 (1276)
..||.....|...+ .++..+....+..-++--||.-++.+..|+.
T Consensus 371 ~kifdl~sk~~~~r-~ev~~lv~r~lqDrss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 371 EKIFDLNSKTVGRR-HEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred HHHHhCcccccchH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 99999766666554 3455555655554555566666666655543
No 152
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.64 E-value=1.8e+03 Score=29.10 Aligned_cols=95 Identities=16% Similarity=0.105 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHH-HhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHH-HhhhHH
Q 039448 845 NKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNM-VAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVY-KLLPST 922 (1276)
Q Consensus 845 N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~m-V~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~-~ll~~v 922 (1276)
+...|..+++....+|..- ++-....++..- +.-...+..+....++|-||--|=--| .+. -++...
T Consensus 171 s~~~~~~~~~~~~~lg~~~------ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A 239 (823)
T KOG2259|consen 171 STGNRLLLYCFHLPLGVSP------SSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRA 239 (823)
T ss_pred cccchHHHHHHhhhcccCC------CcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-----cccHHHHHHH
Confidence 3456777777777666521 111222222211 111112334555566665543221100 011 224444
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHhhcCh
Q 039448 923 FLLLQRKNREIIKANLGLLKVLVAKSHA 950 (1276)
Q Consensus 923 ~llL~s~~REIvKsaLgFvKV~v~~lp~ 950 (1276)
+-+|...+-.|.++|+.+|-|.-...|.
T Consensus 240 ~~~lsD~~e~VR~aAvqlv~v~gn~~p~ 267 (823)
T KOG2259|consen 240 VKHLSDDYEDVRKAAVQLVSVWGNRCPA 267 (823)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhcCCC
Confidence 6788899999999999999999888863
No 153
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=23.35 E-value=3.6e+02 Score=34.04 Aligned_cols=167 Identities=13% Similarity=0.094 Sum_probs=106.8
Q ss_pred hhhhhHHhhccCCCChHHhHHHHHHHHHHH--HHHhhCCCCCChHhHHHHHHhhhhhhhCCCCC------------CC--
Q 039448 18 VDLCSSILSRFSSSAQEEHQHLCAAIGAMS--QELKDQNLPLTPISYFGATCSSLDRLLSSPDP------------DR-- 81 (1276)
Q Consensus 18 ~d~~~~i~~r~~~S~~~~~k~~~avLaAv~--e~i~~q~~~~t~t~YFaAlms~L~~~~~~~~~------------~~-- 81 (1276)
.|.++.++.|... ..+...=+-.+..... .+..+.+.++.++.|=.-+|+.|-....+.+. ..
T Consensus 254 ~~~ae~~LKr~~~-~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~~~~~i~~~~l~~~~ 332 (501)
T PF13001_consen 254 SDRAEDLLKRLSV-SLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFPNILQIVFDGLYSDN 332 (501)
T ss_pred HHHHHHHHhhcCC-CCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCccHHHHHhccccCCc
Confidence 4566666666332 2222222223333333 44567777888888877888777654222110 00
Q ss_pred -CchhHHHHHHHh---hhhccCcChHHHhhhhhhHHHHHHHHhh-----hcCCCchhHH-HHHHHHHHHHhccCC---CC
Q 039448 82 -SSHIIGSLSTIL---SLLLPKISVAVLKKKGDFLTDLVVRVVR-----LSSVTAGAVA-SGLTSLSRLLTGRGR---VN 148 (1276)
Q Consensus 82 -~~~~~~a~lyLL---~lv~p~vP~~vLr~kf~~~~~~l~~~l~-----~~~~~~~~lR-s~i~CL~~LL~aqd~---~~ 148 (1276)
...+-...+.+. .-++.+.+..++..=...+..-+.|.+. ..+.+...+| .+--|||.|++..+. ..
T Consensus 333 ~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d 412 (501)
T PF13001_consen 333 TNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKD 412 (501)
T ss_pred cccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccccc
Confidence 224445566777 7777788888777666666666777773 1122334444 667999999998766 46
Q ss_pred CcchhhHHHHHHhhccCCchhHHHHHHHHHHHHHhccCCCC
Q 039448 149 WSDVSQLYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTL 189 (1276)
Q Consensus 149 W~~~~~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~p 189 (1276)
|+.+.-.|..| -++-|=||-..|+|+..++..+...+
T Consensus 413 ~~li~~LF~sL----~~~~~evr~sIqeALssl~~af~~~~ 449 (501)
T PF13001_consen 413 LSLIEFLFDSL----EDESPEVRVSIQEALSSLAPAFKDLP 449 (501)
T ss_pred HHHHHHHHHHh----hCcchHHHHHHHHHHHHHHHHHhccc
Confidence 77777899998 77788899999999999998765443
No 154
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=23.34 E-value=9.7e+02 Score=28.36 Aligned_cols=97 Identities=11% Similarity=0.175 Sum_probs=61.6
Q ss_pred HHHHHHhcCHhHHhhhhhHHHHHHHHHhcC---CchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCCCChHH
Q 039448 318 GMIKIYSINREICSTKLPIVFNALKDILAS---EHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGPTV 394 (1276)
Q Consensus 318 a~~~l~~~~~~~c~~~LP~~f~~~~~~l~S---~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~~~~~~ 394 (1276)
-..++...-...+..-+-.+|....+.... +-|+.|..=..-|+.++..|++- +..- .+..
T Consensus 99 ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~-l~~l---------------p~~~ 162 (319)
T PF08767_consen 99 IINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPA-LLQL---------------PPEQ 162 (319)
T ss_dssp HHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHH-HHHS----------------HHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHH-HHcC---------------CHHH
Confidence 444555433333333344445555556643 56889988888888999988742 2221 2244
Q ss_pred HHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHhhcc
Q 039448 395 IEKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGT 430 (1276)
Q Consensus 395 i~~i~~~~~~~L~~~y~~aw~~vL~vl~~lf~~lg~ 430 (1276)
...++.++.-++....+..-...|.++..+++.+..
T Consensus 163 f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 163 FKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 566777777777777777888888888877776663
No 155
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=22.49 E-value=2.1e+03 Score=29.48 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=21.2
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHh
Q 039448 155 LYGVVLAFMTDSRLKVRRQSHLCVREILL 183 (1276)
Q Consensus 155 ~~~~LL~f~~d~RPKVRK~Aq~av~~IL~ 183 (1276)
+...|...--|+-|-||.+|-.++..+..
T Consensus 653 ~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~ 681 (897)
T PRK13800 653 FGPALVAALGDGAAAVRRAAAEGLRELVE 681 (897)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 45556666678888888888888877643
No 156
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.48 E-value=2e+03 Score=29.24 Aligned_cols=268 Identities=15% Similarity=0.185 Sum_probs=137.1
Q ss_pred HHHHHHHHHHhcc-CcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHHH
Q 039448 568 MDLAGVLCSALHE-ENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLS 646 (1276)
Q Consensus 568 ~~lA~~L~~~L~~-~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~ 646 (1276)
+++|+.....|+. +|.+|.-..-++-++|.+-- + ...+|++
T Consensus 141 rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P---------~-----------------------------l~e~f~~ 182 (866)
T KOG1062|consen 141 RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP---------D-----------------------------LVEHFVI 182 (866)
T ss_pred HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc---------h-----------------------------HHHHhhH
Confidence 6777777777775 56677666555566765521 1 0124444
Q ss_pred HHHHhhcCCCccccccHHHHHHHhhccCCH-HHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHh
Q 039448 647 ILSRIFLESAKDEGGCLQSTIGDFASIADK-EIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRA 725 (1276)
Q Consensus 647 vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~-~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1276)
---++..... .|.+..++.-|.++|.. .+.-..|+++...|..-..+-....=+ .+=.-.+.+.+|...
T Consensus 183 ~~~~lL~ek~---hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~ys-------peydv~gi~dPFLQi 252 (866)
T KOG1062|consen 183 AFRKLLCEKH---HGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYS-------PEYDVHGISDPFLQI 252 (866)
T ss_pred HHHHHHhhcC---CceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCC-------CccCccCCCchHHHH
Confidence 4444444443 34444455555444322 133466777766665554332111000 000112236678888
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHH----Hh-cCcchhhhhHHHHHHHHHhhCCCCCc
Q 039448 726 RLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTI----LR-KCDGFLSSRLEELLGLMIEVLPSCHF 800 (1276)
Q Consensus 726 ~llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i----~~-~~~~f~~~~~~el~~~L~~~~~~~~~ 800 (1276)
.+|=++..+-.. |.+.-+..+++...+..++|.. --=+|-+|++- +. ...+-+..---.|...++.+-+ -
T Consensus 253 ~iLrlLriLGq~-d~daSd~M~DiLaqvatntdss-kN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d---~ 327 (866)
T KOG1062|consen 253 RILRLLRILGQN-DADASDLMNDILAQVATNTDSS-KNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRD---N 327 (866)
T ss_pred HHHHHHHHhcCC-CccHHHHHHHHHHHHHhccccc-ccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCc---c
Confidence 888877755444 5555555566666665443321 01234444443 32 1111222222223322222211 1
Q ss_pred cchHHHHHHHHHHHHhccCCChH-HHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 039448 801 SAKRHRLDCLYFIIAHVSKDDSE-QRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFF 879 (1276)
Q Consensus 801 ~ak~~RL~cL~~lv~~l~~~~~~-~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~ 879 (1276)
. -|.-.|..|..-+..++.. ++|..+ ||=|+||+-.--|..|++|+-.|-+ ..++...+
T Consensus 328 N---irYvaLn~L~r~V~~d~~avqrHr~t-------IleCL~DpD~SIkrralELs~~lvn----------~~Nv~~mv 387 (866)
T KOG1062|consen 328 N---IRYVALNMLLRVVQQDPTAVQRHRST-------ILECLKDPDVSIKRRALELSYALVN----------ESNVRVMV 387 (866)
T ss_pred c---eeeeehhhHHhhhcCCcHHHHHHHHH-------HHHHhcCCcHHHHHHHHHHHHHHhc----------cccHHHHH
Confidence 1 1222233333222333322 233332 4668888888888888888877765 34566666
Q ss_pred HHHhhhccCCChhHHHHHHHHHHHHHHHh
Q 039448 880 NMVAGGLAGESPHMISAAVKGLARLAYEF 908 (1276)
Q Consensus 880 ~mV~aGLaG~tphMiSatI~ALsrLl~ef 908 (1276)
.=+...|....++.+.-.+.-+.-++-.|
T Consensus 388 ~eLl~fL~~~d~~~k~~~as~I~~laEkf 416 (866)
T KOG1062|consen 388 KELLEFLESSDEDFKADIASKIAELAEKF 416 (866)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 65556666667888887777788888777
No 157
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=22.39 E-value=5.2e+02 Score=32.68 Aligned_cols=70 Identities=21% Similarity=0.321 Sum_probs=43.7
Q ss_pred hhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHH-HHHHHHHHhhcchhhHHHHHHHHHHHHHHH--HHhcCH
Q 039448 919 LPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIH-LASMVEGLLKWQDDTKNQFKSKIKLLLEML--VKKCGL 992 (1276)
Q Consensus 919 l~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~-L~~lv~~Ll~ws~d~k~hfR~KVr~IlerL--IRKfG~ 992 (1276)
|+-+.+||..++-+-|.-|+||+|-|=..|- .+.|. +..|.+-|=..-|+. ..-..|+.++|-| |||-+|
T Consensus 277 Leil~lLLe~PTddSvevaI~flkecGakL~--~VSpr~~n~IfErlR~ILhe~--Eld~rvqy~iEtlf~iRkdkf 349 (739)
T KOG2140|consen 277 LEILTLLLERPTDDSVEVAIAFLKECGAKLA--EVSPRALNGIFERLRYILHEG--ELDRRVQYMIETLFQIRKDKF 349 (739)
T ss_pred HHHHHHHhcCCCCchHHHHHHHHHHHHHHHH--HhChHHHhHHHHHHHHHHhHh--hHHHHHHHHHHHHHHHHHHhh
Confidence 4555789999888889999999999987763 22222 344444433333322 2334577888877 455444
No 158
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=21.93 E-value=2.6e+03 Score=30.38 Aligned_cols=214 Identities=19% Similarity=0.204 Sum_probs=0.0
Q ss_pred hHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCC
Q 039448 742 EIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDD 821 (1276)
Q Consensus 742 ~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~ 821 (1276)
+++.+.+.|...+..+...+-=||.|.|+.|.+....-+.. .+++..+.+-+...+.+-|-.-+..+-..|-.
T Consensus 813 sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~--~dvq~~Vh~R~~DssasVREAaldLvGrfvl~----- 885 (1692)
T KOG1020|consen 813 SFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSR--PDVQEAVHGRLNDSSASVREAALDLVGRFVLS----- 885 (1692)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcC--HHHHHHHHHhhccchhHHHHHHHHHHhhhhhc-----
Q ss_pred hHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHH
Q 039448 822 SEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGL 901 (1276)
Q Consensus 822 ~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~AL 901 (1276)
..+.++.+-.-|+=..+|...-+|+.+..+|-.||...-+ .+-=+-..
T Consensus 886 ----~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pd----------------------------f~~i~~~c 933 (1692)
T KOG1020|consen 886 ----IPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPD----------------------------FSKIVDMC 933 (1692)
T ss_pred ----cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCC----------------------------hhhHHHHH
Q ss_pred HHHHHHhhhhhHHHHHhhhHHHH---HhccCC----HHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhh------cc
Q 039448 902 ARLAYEFSDLVSNVYKLLPSTFL---LLQRKN----REIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLK------WQ 968 (1276)
Q Consensus 902 srLl~ef~d~i~~~~~ll~~v~l---lL~s~~----REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~------ws 968 (1276)
++++-.=.|.-+++.+|.-.|+. |.--.+ .++.+...--+-|..+.. +.+...++.++..+++ +.
T Consensus 934 akmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~~~~vv~~~~--d~~~~~~eqLl~~ilk~~~~~~~~ 1011 (1692)
T KOG1020|consen 934 AKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISLEVDVVMSQV--DLMNDWLEQLLDHILKFYLLKTMK 1011 (1692)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHHHHHHHHHHH--HHhcChHHHHHHHHHHHHHhhhhh
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCHHHHH
Q 039448 969 DDTKNQFKSKIKLLLEMLVKKCGLDAVK 996 (1276)
Q Consensus 969 ~d~k~hfR~KVr~IlerLIRKfG~e~V~ 996 (1276)
.-++---+++|+|+++-++...-...++
T Consensus 1012 ~~~~~v~~~~v~~~~~L~~~cl~~~i~e 1039 (1692)
T KOG1020|consen 1012 ESVKPVALAKVTHVLNLLTHCLVEKISE 1039 (1692)
T ss_pred hhhhHHHHhhcchHHHHHHHHHHHHHHh
No 159
>PTZ00479 RAP Superfamily; Provisional
Probab=21.50 E-value=3.6e+02 Score=33.21 Aligned_cols=72 Identities=15% Similarity=0.037 Sum_probs=52.0
Q ss_pred ccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHH-HhhhHHHHHhccCCHHHHHHHHHHHHHHHhh
Q 039448 873 ENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVY-KLLPSTFLLLQRKNREIIKANLGLLKVLVAK 947 (1276)
Q Consensus 873 ~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~-~ll~~v~llL~s~~REIvKsaLgFvKV~v~~ 947 (1276)
+=+..++..+..-|.-=++|=.++++.||+||.+.....+.... +++..... =++..++|++..|.|.++..
T Consensus 116 efy~~~~~~v~~~L~~fssh~L~~i~wALsrL~Ird~~fL~~~ak~vl~r~~~---~r~~dl~k~~nslakLg~~~ 188 (435)
T PTZ00479 116 EFYEKMLKFVQPLLPNFYSHSLMCIAWALNRVQIRDEAFLSRFAKEVGEKFDD---IRTTDLIKICNSLAKLGGYT 188 (435)
T ss_pred HHHHHHHHHHHHHhhhcCccHHHHHHHHHHhcCCCcHHHHHHHHHHHHhhccc---cCchhHHHHHHHHHHhcCCc
Confidence 44556666666666666789999999999999988776666532 33333222 27889999999999987654
No 160
>KOG3687 consensus Tuberin - Rap/ran-GTPase-activating protein [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=21.48 E-value=7.5e+02 Score=33.56 Aligned_cols=136 Identities=15% Similarity=0.240 Sum_probs=73.0
Q ss_pred hHhHHHHHHHHHc---CCCChhhHHHHHHHHhhhh-----cCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhh
Q 039448 723 MRARLFDLALSLL---PGLNAKEIDVLFVAIKPAL-----QDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEV 794 (1276)
Q Consensus 723 ~~~~llDL~~alv---~~l~~~~~~~Lf~~~~~~l-----~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~ 794 (1276)
....++||+..++ .|.+...+..+|.-+...+ ++.=.+-|.|-|.++++....+.+- .+..++.=.
T Consensus 342 ~wD~il~i~S~~vS~~~Y~~~~~l~~iFh~~~~~ve~L~~qn~~~g~~er~~~lier~ad~rpe~------sVlnli~Yr 415 (1697)
T KOG3687|consen 342 AWDILLNIISRLLSQLQYLDSPELRTIFHDLLTTVEELCDQNEFHGSQERYFELVERCADQRPES------SVLNLISYR 415 (1697)
T ss_pred HHHHHHHHHHHHHHHhhhhcchhhhhHHHhhhhHHHHHHhhhhhcchHHHHHHHHHHhhhcCchH------HHHHHHHHh
Confidence 4667778777666 6778888888887443322 2323567999999999887744321 011222111
Q ss_pred CCCCCccchHHHHHHHHHHHHhccCCChHH----------------HHhhhHHHHHHHHHHHhh-----hhhHHHHHHHH
Q 039448 795 LPSCHFSAKRHRLDCLYFIIAHVSKDDSEQ----------------RRSYILSSFLTEIILALK-----EANKRTRNRAY 853 (1276)
Q Consensus 795 ~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~----------------~~~~~i~~~lpEiIL~~K-----e~N~ktR~~A~ 853 (1276)
..+ -.++|..-++.|..++..-.+..... ...-.=..+|.-|+|..- |.....|.++.
T Consensus 416 ~~~-V~A~R~gwiq~l~~lm~r~~r~~s~~~Vrik~~~~l~~~~l~nr~~yeeEIL~~VvL~~lshi~L~~~~qvr~l~~ 494 (1697)
T KOG3687|consen 416 AQS-VHAARDGWIQNLQALMERFFRSESRGAVRIKVLDVLSFVLLINRQFYEEEILNSVVLSQLSHIPLDKDHQVRKLAT 494 (1697)
T ss_pred hhc-cCcCCchHHHHHHHHHHHHHHhcccceEEEeeHHHHHHHHhhhhhhhHHHhhhheeeEeeccccccchhHHHHHHH
Confidence 111 12334344555555544332211100 000111233333443321 45568999999
Q ss_pred HHHHHHHHHhcc
Q 039448 854 DVLVQIGRAFGD 865 (1276)
Q Consensus 854 ~lLv~mg~~~~~ 865 (1276)
..|+.++..|..
T Consensus 495 ~~l~N~a~~C~t 506 (1697)
T KOG3687|consen 495 QLLVNLAEGCHT 506 (1697)
T ss_pred HHHHHHHhhcch
Confidence 999999987743
No 161
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.43 E-value=2.1e+03 Score=29.11 Aligned_cols=61 Identities=13% Similarity=0.204 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhhcCCCCCCcchhHHHHHHHHHHHhcCh
Q 039448 413 VWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQNLPDEDFPYRKQLHECVGSAVGSMGP 473 (1276)
Q Consensus 413 aw~~vL~vl~~lf~~lg~~~~~~l~~~L~~l~~lr~~~~~~f~~~~~ld~~iGaAi~amGP 473 (1276)
.--+||++++.++++.++...|+...+++-+-.|=.-..++--.+.++=.++-.-|+++|.
T Consensus 588 tk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~ 648 (978)
T KOG1993|consen 588 TKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGA 648 (978)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhcc
Confidence 4468999999999999999999999998888775332222233344454555555666663
No 162
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=20.31 E-value=1.1e+03 Score=25.52 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=27.4
Q ss_pred hHHHHHHhhccCCchhHHHHHHHHHHHHHhc
Q 039448 154 QLYGVVLAFMTDSRLKVRRQSHLCVREILLS 184 (1276)
Q Consensus 154 ~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~ 184 (1276)
.++.+||..++..==|||-.|..++..++.+
T Consensus 7 ~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~ 37 (193)
T PF12612_consen 7 QIIGGLLRQAAEKIDRVREVAGKCLQRLLHS 37 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4788889999888889999999999999954
No 163
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=20.11 E-value=7.7e+02 Score=31.41 Aligned_cols=109 Identities=23% Similarity=0.289 Sum_probs=70.0
Q ss_pred CCChhHHHHHHHHHHHHHHHhhhhhHHHHHh----hhHHHHHhccCCHHHHHHHHH----HHHHHHhh--cChhHHHHHH
Q 039448 888 GESPHMISAAVKGLARLAYEFSDLVSNVYKL----LPSTFLLLQRKNREIIKANLG----LLKVLVAK--SHAEGLQIHL 957 (1276)
Q Consensus 888 G~tphMiSatI~ALsrLl~ef~d~i~~~~~l----l~~v~llL~s~~REIvKsaLg----FvKV~v~~--lp~~~l~~~L 957 (1276)
-.++.|++|-+.|.--|.--.+++...+.+- +.+..-||+.-+--|+++.|. +++|+-.+ -..+.+-|||
T Consensus 122 ~K~~~m~~a~p~av~fL~rgn~el~rn~~~ylslaai~~adLL~~hTEv~~~siLSgn~~LLrvlS~Vye~~P~~i~Phl 201 (851)
T KOG3723|consen 122 NKPPVMALAIPIAVKFLHRGNKELCRNMSNYLSLAAITKADLLADHTEVIVKSILSGNTMLLRVLSAVYEKQPQPINPHL 201 (851)
T ss_pred CCCCceeeehhhHHHHHhccChhhcccchhhhhHHHHhhhhhccCchHHHHHHHhccchHHHHHHHHHHhcCCCccCccc
Confidence 3457787777666544433333333322111 112234566556667788776 88887555 3468899999
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCHHHHHhcCCH
Q 039448 958 ASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDAVKAVMPE 1001 (1276)
Q Consensus 958 ~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~e~V~~~~Pe 1001 (1276)
|.+++-|+......+.-. .|+--||.--..+.+++++|-
T Consensus 202 P~l~~lL~q~~p~~~~ll-----~~l~~LI~Qk~~evL~~ciP~ 240 (851)
T KOG3723|consen 202 PELLALLSQLEPEQYHLL-----RLLHVLIKQKQLEVLQKCIPF 240 (851)
T ss_pred HHHHHHhcCCCHHHHHHH-----HHHHHHHHhccHHHHHHHHHH
Confidence 999999998887654333 456677777788888888884
No 164
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=20.04 E-value=1.9e+03 Score=28.71 Aligned_cols=137 Identities=15% Similarity=0.162 Sum_probs=73.8
Q ss_pred hhHhHHHHHHHHHcCCCChhhHHHH-------HHHHhhhhcCCchhhhhHHHHHHHHHHhcC--cchhhhhHHHHHHHHH
Q 039448 722 FMRARLFDLALSLLPGLNAKEIDVL-------FVAIKPALQDDEGLIQKKAYKVLSTILRKC--DGFLSSRLEELLGLMI 792 (1276)
Q Consensus 722 ~~~~~llDL~~alv~~l~~~~~~~L-------f~~~~~~l~~~d~~~QKKAYk~L~~i~~~~--~~f~~~~~~el~~~L~ 792 (1276)
.+.-..+|++..++.+-.-.++-.. ...+.+.+. -++..|=-+-|+|..++... ...+.++++.|...+.
T Consensus 559 ~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~ 637 (745)
T KOG0301|consen 559 EMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVI 637 (745)
T ss_pred HHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhh
Confidence 3556689999999988655433222 112223332 45788888999999988742 1235556555555444
Q ss_pred hhCCCC-CccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhcc
Q 039448 793 EVLPSC-HFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGD 865 (1276)
Q Consensus 793 ~~~~~~-~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~ 865 (1276)
+.-..- ..-.+..+--+|.+-|.. .++....+..+.+.+.|.+.+=-.+|. ++.|.+|+.+|..|..
T Consensus 638 ~~~s~~~knl~ia~atlaln~sv~l-~~~~~~~~~~~~l~~ai~~~~e~~~d~-----EA~yR~l~AlgtL~t~ 705 (745)
T KOG0301|consen 638 EASSLSNKNLQIALATLALNYSVLL-IQDNEQLEGKEVLLSAISTLLEPVDDL-----EAIYRLLVALGTLMTV 705 (745)
T ss_pred hhhcccchhHHHHHHHHHHHHHHHH-HhcccccchHHHHHHHHHhhcccchhH-----HHHHHHHHHHHhhccc
Confidence 431110 111233333333322212 222221133455555555554333443 5999999999998865
Done!