Query 039448
Match_columns 1276
No_of_seqs 205 out of 268
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 16:38:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bpt_A Importin beta-1 subunit 99.6 6.1E-10 2.1E-14 141.9 59.7 685 155-967 96-833 (861)
2 4fdd_A Transportin-1; heat rep 99.6 1.3E-10 4.6E-15 149.3 53.3 732 113-1009 47-848 (852)
3 1u6g_C TIP120 protein, CAND1; 99.6 1.5E-09 5.3E-14 144.9 64.9 818 29-990 57-962 (1230)
4 2bpt_A Importin beta-1 subunit 99.6 1.2E-09 4.1E-14 139.2 61.0 728 156-1011 6-835 (861)
5 1u6g_C TIP120 protein, CAND1; 99.6 2.6E-11 9E-16 161.9 47.1 610 248-992 8-725 (1230)
6 1qgr_A Protein (importin beta 99.5 1.4E-08 4.9E-13 129.6 61.1 726 157-1008 4-848 (876)
7 1qgr_A Protein (importin beta 99.5 1.5E-08 5.1E-13 129.4 61.2 748 108-966 32-848 (876)
8 4fdd_A Transportin-1; heat rep 99.4 1.5E-08 5.1E-13 130.3 53.4 335 629-1000 340-710 (852)
9 1b3u_A Protein (protein phosph 99.2 8.8E-08 3E-12 116.3 39.3 231 743-995 322-555 (588)
10 1b3u_A Protein (protein phosph 99.1 1.1E-07 3.6E-12 115.5 37.4 349 568-994 163-515 (588)
11 2x19_B Importin-13; nuclear tr 98.9 0.0007 2.4E-08 88.0 65.9 286 567-908 527-848 (963)
12 2x1g_F Cadmus; transport prote 98.7 0.0046 1.6E-07 80.5 58.8 340 565-961 542-920 (971)
13 3ibv_A Exportin-T; karyopherin 98.4 0.0058 2E-07 80.0 50.7 232 720-993 508-773 (980)
14 2qk2_A LP04448P; mini spindles 98.4 9.1E-06 3.1E-10 88.5 18.3 195 752-1001 22-218 (242)
15 1ibr_B P95, importin beta-1 su 98.3 8.9E-06 3E-10 95.5 18.7 294 642-966 127-458 (462)
16 2x1g_F Cadmus; transport prote 98.2 0.051 1.8E-06 70.7 55.6 234 721-964 520-779 (971)
17 1ibr_B P95, importin beta-1 su 98.2 0.00011 3.8E-09 86.1 23.1 264 722-992 145-441 (462)
18 2x19_B Importin-13; nuclear tr 98.1 0.068 2.3E-06 69.3 53.4 318 641-992 527-898 (963)
19 1wa5_C Importin alpha RE-expor 98.1 0.045 1.5E-06 71.4 48.1 271 720-997 471-800 (960)
20 2qk1_A Protein STU2; STU2P, XM 98.1 6.2E-05 2.1E-09 83.2 17.9 200 752-960 23-234 (249)
21 1wa5_B Importin alpha subunit; 97.9 0.00074 2.5E-08 81.8 24.8 316 569-949 130-460 (530)
22 2qk1_A Protein STU2; STU2P, XM 97.8 0.00029 9.9E-09 77.8 17.0 198 799-1001 26-233 (249)
23 2jdq_A Importin alpha-1 subuni 97.8 0.0042 1.4E-07 72.5 27.6 313 569-949 64-393 (450)
24 4b8j_A Importin subunit alpha- 97.7 0.0068 2.3E-07 73.1 26.7 314 569-948 117-445 (528)
25 1wa5_C Importin alpha RE-expor 97.5 0.54 1.8E-05 61.2 56.5 324 565-947 492-845 (960)
26 1w63_A Adapter-related protein 97.4 0.45 1.5E-05 58.9 38.9 257 645-946 315-577 (618)
27 2jdq_A Importin alpha-1 subuni 97.3 0.011 3.9E-07 68.8 21.7 260 722-990 80-349 (450)
28 2vgl_B AP-2 complex subunit be 97.1 0.7 2.4E-05 56.8 35.4 214 116-366 87-312 (591)
29 1wa5_B Importin alpha subunit; 97.1 0.19 6.6E-06 60.5 29.4 310 642-990 129-459 (530)
30 2vgl_B AP-2 complex subunit be 97.0 0.03 1E-06 69.1 22.3 293 568-950 120-423 (591)
31 4b8j_A Importin subunit alpha- 96.9 0.23 7.9E-06 59.6 27.9 227 755-990 213-445 (528)
32 3tpo_A Importin subunit alpha- 96.7 0.11 3.7E-06 63.0 23.5 333 547-944 98-447 (529)
33 4ffb_C Protein STU2; tubulin f 96.7 0.024 8.3E-07 62.8 16.2 187 754-949 18-215 (278)
34 3ibv_A Exportin-T; karyopherin 96.6 3.2 0.00011 54.3 63.0 628 224-971 208-948 (980)
35 2qk2_A LP04448P; mini spindles 96.6 0.014 4.8E-07 63.1 12.8 194 251-481 19-217 (242)
36 4hxt_A De novo protein OR329; 96.5 0.16 5.5E-06 53.8 20.6 229 750-989 7-242 (252)
37 3m1i_C Exportin-1; heat repeat 96.5 3.9 0.00013 53.7 58.7 302 565-909 536-881 (1049)
38 3ul1_B Importin subunit alpha- 96.5 0.27 9.3E-06 59.3 24.3 334 547-945 79-429 (510)
39 4db8_A Armadillo-repeat protei 96.4 0.084 2.9E-06 56.6 17.6 191 747-946 14-209 (252)
40 4db6_A Armadillo repeat protei 96.2 0.14 4.7E-06 53.3 17.1 184 746-944 13-207 (210)
41 1w63_A Adapter-related protein 96.1 0.22 7.7E-06 61.7 21.7 322 568-966 141-470 (618)
42 2of3_A ZYG-9; multifunctional 96.1 0.32 1.1E-05 54.1 20.3 203 727-948 36-238 (266)
43 3b2a_A TON_1937, putative unch 96.0 0.28 9.5E-06 53.4 18.1 221 746-986 34-259 (265)
44 2vgl_A Adaptor protein complex 95.9 0.17 5.7E-06 63.0 18.8 277 568-910 145-437 (621)
45 3m1i_C Exportin-1; heat repeat 95.5 9.8 0.00034 49.9 61.6 159 638-815 750-929 (1049)
46 4hat_C Exportin-1; heat repeat 95.5 10 0.00034 49.9 51.5 177 642-838 446-638 (1023)
47 3tpo_A Importin subunit alpha- 95.3 0.73 2.5E-05 55.7 21.2 276 112-426 205-497 (529)
48 2iw3_A Elongation factor 3A; a 95.0 1.5 5.2E-05 57.0 23.4 220 131-365 70-324 (986)
49 3ul1_B Importin subunit alpha- 94.7 1.4 4.9E-05 52.9 21.2 201 112-369 186-391 (510)
50 4hxt_A De novo protein OR329; 94.2 1.6 5.4E-05 46.0 17.9 190 750-949 49-244 (252)
51 3now_A UNC-45 protein, SD10334 93.7 22 0.00074 45.5 39.3 171 762-946 598-782 (810)
52 4db8_A Armadillo-repeat protei 93.4 1.2 4.2E-05 47.4 15.4 184 750-942 59-247 (252)
53 4ffb_C Protein STU2; tubulin f 93.2 0.72 2.5E-05 50.9 13.5 190 798-993 18-217 (278)
54 3now_A UNC-45 protein, SD10334 93.2 25 0.00087 44.9 47.8 193 739-944 525-735 (810)
55 2vgl_A Adaptor protein complex 93.2 22 0.00074 44.0 41.4 203 721-944 383-587 (621)
56 1xqr_A HSPBP1 protein; armadil 92.7 15 0.00052 41.1 23.9 207 728-948 13-240 (296)
57 4db6_A Armadillo repeat protei 92.3 1.9 6.4E-05 44.5 14.5 114 832-949 54-170 (210)
58 2z6g_A B-catenin; FULL-length, 92.0 33 0.0011 43.4 31.4 141 750-906 365-518 (780)
59 3o2t_A Symplekin; heat repeat, 91.6 20 0.0007 41.7 23.3 242 737-1001 55-332 (386)
60 3a6p_A Exportin-5; exportin-5, 91.2 11 0.00037 50.4 23.4 80 914-993 348-457 (1204)
61 2z6h_A Catenin beta-1, beta-ca 90.3 25 0.00084 43.3 24.1 172 759-946 197-382 (644)
62 1vsy_5 Proteasome activator BL 90.1 5.5 0.00019 52.1 18.5 85 104-188 28-167 (997)
63 3grl_A General vesicular trans 88.8 24 0.00082 43.8 21.5 318 18-366 20-395 (651)
64 3ltj_A Alpharep-4; protein eng 87.5 9 0.00031 39.2 14.8 148 747-942 16-163 (201)
65 2iw3_A Elongation factor 3A; a 87.2 13 0.00045 48.4 18.8 134 827-967 90-225 (986)
66 2z6h_A Catenin beta-1, beta-ca 86.6 68 0.0023 39.3 26.8 110 834-949 226-339 (644)
67 3b2a_A TON_1937, putative unch 86.3 31 0.001 37.7 18.0 171 221-411 45-222 (265)
68 3ltm_A Alpha-REP4; protein eng 86.2 11 0.00039 38.7 14.9 153 738-942 16-168 (211)
69 3tjz_B Coatomer subunit gamma; 85.9 31 0.0011 39.8 19.3 291 12-365 19-316 (355)
70 3gjx_A Exportin-1; transport, 84.8 1.1E+02 0.0039 40.2 56.9 73 104-184 199-276 (1073)
71 1xqr_A HSPBP1 protein; armadil 84.1 31 0.0011 38.6 18.0 210 723-946 56-287 (296)
72 1oyz_A Hypothetical protein YI 83.7 30 0.001 37.2 17.3 153 752-941 30-183 (280)
73 1jdh_A Beta-catenin; beta-cate 83.6 27 0.00092 41.0 18.3 181 749-943 21-212 (529)
74 3ltj_A Alpharep-4; protein eng 81.5 27 0.00093 35.5 15.2 165 722-941 29-193 (201)
75 2z6g_A B-catenin; FULL-length, 81.5 1.2E+02 0.0042 38.2 25.1 105 835-945 363-471 (780)
76 3ltm_A Alpha-REP4; protein eng 79.5 41 0.0014 34.4 15.9 166 722-942 34-199 (211)
77 2of3_A ZYG-9; multifunctional 78.9 37 0.0013 37.5 15.8 143 743-905 85-235 (266)
78 3opb_A SWI5-dependent HO expre 73.8 1.7E+02 0.0058 37.1 21.5 109 248-365 607-728 (778)
79 1jdh_A Beta-catenin; beta-cate 73.0 1.5E+02 0.005 34.6 27.5 109 835-949 230-342 (529)
80 3u0r_A Apoptosis inhibitor 5; 68.1 1.8E+02 0.006 34.9 18.6 250 154-485 65-326 (507)
81 3dad_A FH1/FH2 domain-containi 66.5 93 0.0032 35.6 15.4 95 844-949 130-234 (339)
82 1oyz_A Hypothetical protein YI 66.5 1.2E+02 0.0043 32.2 16.3 201 639-905 19-220 (280)
83 4hat_C Exportin-1; heat repeat 62.4 3.7E+02 0.013 35.2 65.6 295 565-899 536-870 (1023)
84 2db0_A 253AA long hypothetical 61.0 64 0.0022 34.1 11.5 116 768-905 130-245 (253)
85 1vsy_5 Proteasome activator BL 60.7 3.9E+02 0.013 35.0 24.3 405 18-466 507-963 (997)
86 3tjz_B Coatomer subunit gamma; 45.9 2.3E+02 0.0077 32.5 14.4 155 724-902 45-201 (355)
87 1lsh_A Lipovitellin (LV-1N, LV 44.9 5.9E+02 0.02 33.4 20.0 161 806-982 415-592 (1056)
88 2g9p_A Antimicrobial peptide l 41.0 11 0.00038 25.8 1.4 15 982-996 2-16 (26)
89 3o2t_A Symplekin; heat repeat, 39.6 56 0.0019 38.1 8.0 94 103-204 217-318 (386)
90 2npp_B PP2A, B subunit, serine 36.1 4.2E+02 0.014 31.3 14.8 166 153-358 183-348 (449)
91 1vsy_4 Proteasome activator BL 31.9 9E+02 0.031 30.7 29.1 206 738-951 225-460 (799)
92 3gs3_A Symplekin, LD45768P; he 28.7 6E+02 0.02 27.6 22.0 137 723-863 31-175 (257)
93 3u0r_A Apoptosis inhibitor 5; 28.1 8.5E+02 0.029 29.2 20.1 48 547-599 83-131 (507)
94 1te4_A Conserved protein MTH18 26.2 90 0.0031 29.5 5.9 82 835-939 45-126 (131)
95 2ll2_A GAP junction alpha-1 pr 31.9 14 0.00049 26.3 0.0 15 1206-1222 1-15 (26)
96 3grl_A General vesicular trans 25.1 5.3E+02 0.018 32.0 13.5 118 242-367 17-153 (651)
97 1sz9_A PCF11 protein; RNA poly 25.1 2.5E+02 0.0086 27.8 9.0 49 635-683 77-132 (144)
98 3sui_B Transient receptor pote 23.3 24 0.00082 26.4 0.8 31 472-503 1-35 (37)
99 3pst_A Protein DOA1; protein d 22.8 1.6E+02 0.0055 34.7 8.0 134 724-863 243-388 (425)
100 1te4_A Conserved protein MTH18 21.3 2.8E+02 0.0094 26.0 8.3 86 250-362 45-130 (131)
101 3ebb_A Phospholipase A2-activa 21.2 5.9E+02 0.02 28.3 12.1 146 722-882 117-275 (304)
102 4atg_A TAF6; transcription, TF 20.7 7.4E+02 0.025 25.9 16.8 40 827-866 82-124 (196)
103 3nmw_A APC variant protein; AR 20.6 9.3E+02 0.032 27.0 17.2 191 746-951 128-339 (354)
104 3s4w_B Protein FACD2, fanconi 20.1 1.7E+03 0.058 29.9 22.0 107 826-944 436-548 (1323)
No 1
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.57 E-value=6.1e-10 Score=141.93 Aligned_cols=685 Identities=10% Similarity=0.096 Sum_probs=369.2
Q ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHhc-cCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHH
Q 039448 155 LYGVVLAFMTDSRLKVRRQSHLCVREILLS-LQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDAL 233 (1276)
Q Consensus 155 ~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~-~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lL 233 (1276)
.-..||....++-|+||+.+..++..|... +|.. . - +.+..++.+.+ ... .....-..++++|..+
T Consensus 96 ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~-~---w-~~ll~~L~~~l---~~~-----~~~~~r~~al~~l~~l 162 (861)
T 2bpt_A 96 IKTNALTALVSIEPRIANAAAQLIAAIADIELPHG-A---W-PELMKIMVDNT---GAE-----QPENVKRASLLALGYM 162 (861)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT-C---C-HHHHHHHHHHT---STT-----SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCccc-c---c-HHHHHHHHHHH---hcC-----CCHHHHHHHHHHHHHH
Confidence 566788888888899999999999999874 3210 0 0 11222222222 100 0111123445555444
Q ss_pred Hhhc-cCC--CchhHHHHHHHHHHhhccC--chhHHHHHHHHHHHHhcCCCCCCC----HHHHHHHHHHhcccCCCCCCc
Q 039448 234 KECL-PLM--STKYTAVILKYFKTLLELR--QPLVTRRVTDALNVICLHPTLEVS----AEALLDLLCSLALSVSTNETS 304 (1276)
Q Consensus 234 k~~l-~~~--~~~~~~~i~~~ll~Ll~l~--n~~lt~~~~~~~~~lf~~~~~~l~----~~~~~~li~aL~~~~~~~~~~ 304 (1276)
-.-+ +.+ -......+.+.+...+.-. ++-|...++++|..+..-....+. .+.+.+.|..+. .+..
T Consensus 163 ~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~---~~~~-- 237 (861)
T 2bpt_A 163 CESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT---QAED-- 237 (861)
T ss_dssp HHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH---TCSC--
T ss_pred HHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHh---cCCC--
Confidence 3322 221 1346778888888888776 788999999999886422111111 123444444432 2111
Q ss_pred hhhHHHHHHHHHHHHHHHHhcCHhHHhhhhh-HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhh--hccccc
Q 039448 305 ADAMTFTARLLNVGMIKIYSINREICSTKLP-IVFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQ--GVDQIT 381 (1276)
Q Consensus 305 ~~~l~~~~~vl~~a~~~l~~~~~~~c~~~LP-~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~--~v~~~~ 381 (1276)
...-.+...++ ..++...+..-..+++ .++..+...+.++.++++..|.+.+..+.....+...... +..+.
T Consensus 238 ~~~r~~a~~~l----~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~- 312 (861)
T 2bpt_A 238 IEVQAAAFGCL----CKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPL- 312 (861)
T ss_dssp HHHHHHHHHHH----HHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSC-
T ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCch-
Confidence 11111222222 2222222222234666 7888888888899999999999999887765432111000 00000
Q ss_pred ccCCCcCCCChHHHHHHHHHHHhhhhcch----hhhH---HHHHHHHHHHHHhhcccchhhHHHHHHHHHhhhcCCCCCC
Q 039448 382 NVNSDARKSGPTVIEKICATVESLLDYHY----SAVW---DMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQNLPDEDF 454 (1276)
Q Consensus 382 ~~~~~~~~~~~~~i~~i~~~~~~~L~~~y----~~aw---~~vL~vl~~lf~~lg~~~~~~l~~~L~~l~~lr~~~~~~f 454 (1276)
. ........+..++..+-..|...- ...| ..+...+..+...+|.... ..++..+.++-. +.+.
T Consensus 313 ---~-~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~---~~l~~~l~~~l~--~~~~ 383 (861)
T 2bpt_A 313 ---Q-SYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL---EPVLEFVEQNIT--ADNW 383 (861)
T ss_dssp ---C-CCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH---HHHHHHHHHHTT--CSSH
T ss_pred ---h-hHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH---HHHHHHHHHHcC--CCCh
Confidence 0 000001223344444433333210 0112 3455566666666664333 333333333322 2333
Q ss_pred cchhHHHHHHHHHHHhcChhhHhhcccCccccCcccccccchhhhhhhccCCCChHhHHHHHHHHHHHHHHHhHHhhhhc
Q 039448 455 PYRKQLHECVGSAVGSMGPETFLCLLPLKLEASDLSEVNVWLFPILKQYIIGARLNFFMEKLLGMAKLIGQKSQKFELEG 534 (1276)
Q Consensus 455 ~~~~~ld~~iGaAi~amGPe~vL~~lPLnl~~~~~~~~RaWLLPlLr~~i~~t~L~fF~~~~lPLa~~~~~k~~~~~~~~ 534 (1276)
..|..+=.++|+.+...+|+.+...+| -++|.|-......+ |.
T Consensus 384 ~~r~~a~~~l~~i~~~~~~~~~~~~l~-------------~il~~l~~~l~d~~---------~~--------------- 426 (861)
T 2bpt_A 384 RNREAAVMAFGSIMDGPDKVQRTYYVH-------------QALPSILNLMNDQS---------LQ--------------- 426 (861)
T ss_dssp HHHHHHHHHHHHTSSSSCHHHHHHHHH-------------HHHHHHHHGGGCSC---------HH---------------
T ss_pred hHHHHHHHHHHHHHcCCCHHHHHHHHH-------------HHHHHHHHHcCCCc---------HH---------------
Confidence 445555555665554444443322211 12222222211110 00
Q ss_pred cchhhhhHHHHHHHHHhhhhCCCCCCcchhhhHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhh
Q 039448 535 RVFSSRSADALVYSLWSLLPSFCNYPVDTAESFMDLAGVLCSALHEENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVI 614 (1276)
Q Consensus 535 ~~~~ak~~~tL~~QlWsLLPgFC~~P~D~~~sF~~lA~~L~~~L~~~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~ 614 (1276)
+ + .+ ....++-+..+|....+-...+..+-+.|...|.+.|..|...|.+|..+++.-.. .. .
T Consensus 427 --v--r--~~-a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~---~~--~----- 489 (861)
T 2bpt_A 427 --V--K--ET-TAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAE---AT--P----- 489 (861)
T ss_dssp --H--H--HH-HHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSS---SS--S-----
T ss_pred --H--H--HH-HHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhccc---cc--c-----
Confidence 0 0 00 00111112222211111134566766777777877899999999999999865310 00 0
Q ss_pred hhHHHhhhhcCChHHHHHhHHHHHHhhHhHHHHHHHhhcCCC--ccccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Q 039448 615 STASQRAMAHYTTKVATDNLNVLKSSARELLSILSRIFLESA--KDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLE 692 (1276)
Q Consensus 615 ~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~vLfNvy~~~~--~~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~ 692 (1276)
..+..|...+++.|+++..... +..+....++|...+...+.+ +..++..++..+.+
T Consensus 490 --------------------~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~-~~~~~~~l~~~l~~ 548 (861)
T 2bpt_A 490 --------------------SPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDT-VAETSASISTFVMD 548 (861)
T ss_dssp --------------------CGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGG-GHHHHHHHHHHHHH
T ss_pred --------------------hhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchh-hHHHHHHHHHHHHH
Confidence 1233455678888988887543 344556678888888777654 34455555444444
Q ss_pred HHHHhc-ccccccCCCcccccCCCCCCCchhhHhHHHHHHHHHcCCCCh---hhHHHHHHHHhhhhcCCch-hhhhHHHH
Q 039448 693 ATQEAG-KTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGLNA---KEIDVLFVAIKPALQDDEG-LIQKKAYK 767 (1276)
Q Consensus 693 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv~~l~~---~~~~~Lf~~~~~~l~~~d~-~~QKKAYk 767 (1276)
.....- .+..--+ .++. ......+..+++.+..++..++. ..+..++..+...+++.+. .++..++.
T Consensus 549 ~l~~~~~~~~~i~~-----~~~~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~ 620 (861)
T 2bpt_A 549 KLGQTMSVDENQLT-----LEDA---QSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFY 620 (861)
T ss_dssp HHHHHTTSCGGGCC-----HHHH---HHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHH
T ss_pred HHHHHHhhhcccCC-----hhhH---HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHH
Confidence 432110 0000000 0000 01112445566666666655443 3456677777777777666 88999999
Q ss_pred HHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhh--
Q 039448 768 VLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEAN-- 845 (1276)
Q Consensus 768 ~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N-- 845 (1276)
.+..++.....-+..++..+...|...+.......+..=+.++..++..+.. ....++..+++-++-++++.|
T Consensus 621 ~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~-----~~~~~~~~l~~~l~~~l~~~~~~ 695 (861)
T 2bpt_A 621 AISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEE-----DFRRYSDAMMNVLAQMISNPNAR 695 (861)
T ss_dssp HHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGG-----GGHHHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhch-----hccchHHHHHHHHHHHhCCcccc
Confidence 9999988554445567777777777776443344455555566666544322 234677888887777777765
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHh----hhccCCC-----------hhHHHHHHHHHHHHHHHhhh
Q 039448 846 KRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVA----GGLAGES-----------PHMISAAVKGLARLAYEFSD 910 (1276)
Q Consensus 846 ~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~----aGLaG~t-----------phMiSatI~ALsrLl~ef~d 910 (1276)
...|..|+..|-.|...+.+ .+..|+..++ ..+.... .....+++-+++.++...++
T Consensus 696 ~~vr~~~~~~l~~l~~~~~~--------~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~ 767 (861)
T 2bpt_A 696 RELKPAVLSVFGDIASNIGA--------DFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHD 767 (861)
T ss_dssp TTHHHHHHHHHHHHHHHHGG--------GGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HhhhHHHHHHHHHHHHHhhh--------hHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 78999999999999998743 3555554443 3333211 23567888899999977652
Q ss_pred ---hhH-HHHHhhhHHHHHhccC----CHHHHHHHHHHHHHHHhhcChhHHHHHHH-HHHHHHhhc
Q 039448 911 ---LVS-NVYKLLPSTFLLLQRK----NREIIKANLGLLKVLVAKSHAEGLQIHLA-SMVEGLLKW 967 (1276)
Q Consensus 911 ---~i~-~~~~ll~~v~llL~s~----~REIvKsaLgFvKV~v~~lp~~~l~~~L~-~lv~~Ll~w 967 (1276)
.+. .+.++++.+...+.+. +.+|.+++++.+-.++..+|...+.++++ .+++.|++.
T Consensus 768 ~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~ 833 (861)
T 2bpt_A 768 KPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKR 833 (861)
T ss_dssp CHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHH
Confidence 222 3445555555556553 88999999999999999996566667776 666766654
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.56 E-value=1.3e-10 Score=149.26 Aligned_cols=732 Identities=12% Similarity=0.107 Sum_probs=383.0
Q ss_pred HHHHHHHhhhcCCCchhHHHHHH-HHHHHHhccCCCCCcchhh-----HHHHHHhhccCCchhHHHHHHHHHHHHHhccC
Q 039448 113 TDLVVRVVRLSSVTAGAVASGLT-SLSRLLTGRGRVNWSDVSQ-----LYGVVLAFMTDSRLKVRRQSHLCVREILLSLQ 186 (1276)
Q Consensus 113 ~~~l~~~l~~~~~~~~~lRs~i~-CL~~LL~aqd~~~W~~~~~-----~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~ 186 (1276)
...+..++.......+-+|..-+ .|...+ ...|..+.+ .-..||..-.|+-|.||+.|-++|..|.+.-.
T Consensus 47 ~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i----~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~ 122 (852)
T 4fdd_A 47 NNYLIFVLTKLKSEDEPTRSLSGLILKNNV----KAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGE 122 (852)
T ss_dssp HHHHHHHHHTCTTSCHHHHHHHHHHHHHHT----TTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccCCCChHHHHHHHHHHHHHH----HHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC
Confidence 33444555542334456664322 222222 246976432 66777777778899999999999998886310
Q ss_pred CCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhccCCCchhHHHHHHHHHHhhccCchhHHHH
Q 039448 187 GTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECLPLMSTKYTAVILKYFKTLLELRQPLVTRR 266 (1276)
Q Consensus 187 ~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~~~~~~~~~~i~~~ll~Ll~l~n~~lt~~ 266 (1276)
|. .| ..+.+.+..++.-.++-+...
T Consensus 123 --~~---------------------------------------------------~w--p~ll~~L~~~l~~~~~~~r~~ 147 (852)
T 4fdd_A 123 --LQ---------------------------------------------------NW--PDLLPKLCSLLDSEDYNTCEG 147 (852)
T ss_dssp --TT---------------------------------------------------TC--TTHHHHHHHHHSCSSHHHHHH
T ss_pred --cc---------------------------------------------------cc--HHHHHHHHHHHcCCCHHHHHH
Confidence 00 01 112333333344445555556
Q ss_pred HHHHHHHHhcCCCCCCCHH----HHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCHhHHhhhhhHHHHHHH
Q 039448 267 VTDALNVICLHPTLEVSAE----ALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINREICSTKLPIVFNALK 342 (1276)
Q Consensus 267 ~~~~~~~lf~~~~~~l~~~----~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~~~c~~~LP~~f~~~~ 342 (1276)
++.+|..+|...+..+..+ .+..++..|.....+.+ ...-...++ ++..+....+..-...++.++..+.
T Consensus 148 al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~--~~vR~~A~~----aL~~~~~~~~~~~~~~~~~~l~~l~ 221 (852)
T 4fdd_A 148 AFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSS--PKIRSHAVA----CVNQFIISRTQALMLHIDSFIENLF 221 (852)
T ss_dssp HHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSS--HHHHHHHHH----HHHTTTTTTCHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCC--HHHHHHHHH----HHHHHHhcccHHHHHHHHHHHHHHH
Confidence 6666666654333221110 12334444433332221 111111111 2333444444455567788888888
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCCCChHHHHHHHHHHHhhhhcchhhhHHHHHHHHH
Q 039448 343 DILASEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGPTVIEKICATVESLLDYHYSAVWDMAFQIVS 422 (1276)
Q Consensus 343 ~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~~~~~~i~~i~~~~~~~L~~~y~~aw~~vL~vl~ 422 (1276)
..+.++.++|+..|.+||..+...+- ..+. ..+..++..+-.+++-.....-..++..+.
T Consensus 222 ~~~~d~~~~vr~~a~~~L~~l~~~~~--~~~~------------------~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~ 281 (852)
T 4fdd_A 222 ALAGDEEPEVRKNVCRALVMLLEVRM--DRLL------------------PHMHNIVEYMLQRTQDQDENVALEACEFWL 281 (852)
T ss_dssp HHHTCCCHHHHHHHHHHHHHHHHHCH--HHHG------------------GGHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHhCH--HHHH------------------HHHHHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence 88899999999999999998876432 1111 112222222222222111111122222222
Q ss_pred HHHHh--hcccchhhHHHHHHHHHhhh-----------cCC--C-------CCCcchhHHHHHHHHHHHhcChhhHhhcc
Q 039448 423 TMFDK--LGTYSSYFMRGALKNLADMQ-----------NLP--D-------EDFPYRKQLHECVGSAVGSMGPETFLCLL 480 (1276)
Q Consensus 423 ~lf~~--lg~~~~~~l~~~L~~l~~lr-----------~~~--~-------~~f~~~~~ld~~iGaAi~amGPe~vL~~l 480 (1276)
.+.+. +.....|++..++..+-.+- ..+ | ..+..|..+-.++|.-...+|.+.+-.++
T Consensus 282 ~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~~~~~l~ 361 (852)
T 4fdd_A 282 TLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHIL 361 (852)
T ss_dssp HHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 22211 01111233333333222111 110 0 23455777888999888888865544455
Q ss_pred cCccc---cCc--ccccccchhhhhhhccCCCChHhHHHHHHHHHHHHHHHhHHhhhhccc-hhhhhHHHHHHHHHhhhh
Q 039448 481 PLKLE---ASD--LSEVNVWLFPILKQYIIGARLNFFMEKLLGMAKLIGQKSQKFELEGRV-FSSRSADALVYSLWSLLP 554 (1276)
Q Consensus 481 PLnl~---~~~--~~~~RaWLLPlLr~~i~~t~L~fF~~~~lPLa~~~~~k~~~~~~~~~~-~~ak~~~tL~~QlWsLLP 554 (1276)
|+=.. ..+ ....=.|.|--|-++.. ..+.-+...++|....+- .+... +...... ...++...++
T Consensus 362 ~~l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~~l~~~l~~l~~~l-------~d~~~~Vr~~a~~-~l~~l~~~~~ 432 (852)
T 4fdd_A 362 PLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIPYLPELIPHLIQCL-------SDKKALVRSITCW-TLSRYAHWVV 432 (852)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGGGHHHHHHHHHHHT-------TCSSHHHHHHHHH-HHHHTHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHHHHHHc-------CCCCHHHHHHHHH-HHHHHHHHhc
Confidence 54221 110 01122334444433221 122223444555443322 11111 1111111 1223334343
Q ss_pred CCCCCCcchhhhHHHHHHHHHHHhc-cCcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHh
Q 039448 555 SFCNYPVDTAESFMDLAGVLCSALH-EENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDN 633 (1276)
Q Consensus 555 gFC~~P~D~~~sF~~lA~~L~~~L~-~~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~n 633 (1276)
.. +....+..+-+.|...|. ..+.+|...|.+|..+++....
T Consensus 433 ~~-----~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~-------------------------------- 475 (852)
T 4fdd_A 433 SQ-----PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACT-------------------------------- 475 (852)
T ss_dssp HS-----CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGG--------------------------------
T ss_pred cc-----hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhH--------------------------------
Confidence 32 233455666666666665 4789999999999999865310
Q ss_pred HHHHHHhhHhHHHHHHHhhcCCCccccccHHHHHHHhhccCCHHH-HHHHHHHHHHHHHHHHHHhcccccccCCCccccc
Q 039448 634 LNVLKSSARELLSILSRIFLESAKDEGGCLQSTIGDFASIADKEI-VTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQID 712 (1276)
Q Consensus 634 l~~L~~~A~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~~-l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~ 712 (1276)
.+..|-..+++.|++++.+........+.++|...+....+.. -..++..++..|.+....-. +.
T Consensus 476 --~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~-----d~------- 541 (852)
T 4fdd_A 476 --ELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLK-----DE------- 541 (852)
T ss_dssp --GGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSC-----TT-------
T ss_pred --hhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcc-----cc-------
Confidence 1223456778888887755332222334567766653322211 12345555555544321100 00
Q ss_pred CCCCCCCchhhHhHHHHHHHHHcCCCCh---hhHHHHHH----HHhhhh-------------cCCchhhhhHHHHHHHHH
Q 039448 713 DSSNESSPDFMRARLFDLALSLLPGLNA---KEIDVLFV----AIKPAL-------------QDDEGLIQKKAYKVLSTI 772 (1276)
Q Consensus 713 ~~~~~~~~~~~~~~llDL~~alv~~l~~---~~~~~Lf~----~~~~~l-------------~~~d~~~QKKAYk~L~~i 772 (1276)
+ + ..+ .+++-+..++..+.. ..+..+|. .+...+ ...|..+|..+..+|..|
T Consensus 542 --~---~--~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l 613 (852)
T 4fdd_A 542 --D---K--DLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGL 613 (852)
T ss_dssp --C---T--THH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHH
T ss_pred --c---H--HHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHH
Confidence 0 1 111 234433333322211 12233333 333222 123566788888999999
Q ss_pred HhcCcchhhhhH--HHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHH
Q 039448 773 LRKCDGFLSSRL--EELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRN 850 (1276)
Q Consensus 773 ~~~~~~f~~~~~--~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~ 850 (1276)
++.-+..+...+ ..+..++...+....+.-|..=+.++..+....... ...+++.++|-++-...+.+-.+|+
T Consensus 614 ~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~-----~~~~l~~~lp~l~~~l~~~~~~v~~ 688 (852)
T 4fdd_A 614 AEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQH-----VKPCIADFMPILGTNLNPEFISVCN 688 (852)
T ss_dssp HHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG-----TGGGHHHHHHHHHHTCCTTSHHHHH
T ss_pred HHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHHHHHcCccchHHHH
Confidence 885434344444 457778888776655666777777787776554432 3467777888777777666778899
Q ss_pred HHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCC--ChhHHHHHHHHHHHHHHHhhhhhH-HHHHhhhHHHHHhc
Q 039448 851 RAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGE--SPHMISAAVKGLARLAYEFSDLVS-NVYKLLPSTFLLLQ 927 (1276)
Q Consensus 851 ~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~--tphMiSatI~ALsrLl~ef~d~i~-~~~~ll~~v~llL~ 927 (1276)
.|...+-.|+..+.... ..-+..++..+..-|... .....-.++.+|+||...+.+.+. .+.++++..|..|.
T Consensus 689 ~a~~alg~i~~~~~~~~----~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~ 764 (852)
T 4fdd_A 689 NATWAIGEISIQMGIEM----QPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLR 764 (852)
T ss_dssp HHHHHHHHHHHHHGGGG----GGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHhH----HHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHHhCHHHhCccHHHHHHHHHHHhc
Confidence 99999999998885421 122233333333323221 235778889999999999988774 57788888777664
Q ss_pred --cCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcC---HHHHHhcCCHH
Q 039448 928 --RKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCG---LDAVKAVMPEE 1002 (1276)
Q Consensus 928 --s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG---~e~V~~~~Pee 1002 (1276)
+++-|-..+.-||..++- . ....+.+++..++.++.+|.+- +...+..+++||.-.=.-+| |+.+-.-+|++
T Consensus 765 ~~~d~~e~~~a~~~l~~li~-~-~p~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 841 (852)
T 4fdd_A 765 NIRDNEEKDSAFRGICTMIS-V-NPSGVIQDFIFFCDAVASWINP-KDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLP 841 (852)
T ss_dssp TSCSSHHHHHHHHHHHHHHH-H-CGGGTGGGHHHHHHHHHTCSSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHH
T ss_pred cccccHHHHHHHHHHHHHHH-h-ChHhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHhCCchhHHHHHHhCCHH
Confidence 455566666677776543 3 4456778999999999999863 33344444444443333343 78888888998
Q ss_pred HHHHHHH
Q 039448 1003 HMKLLKN 1009 (1276)
Q Consensus 1003 ~~KlL~n 1009 (1276)
.+..|..
T Consensus 842 ~~~~l~~ 848 (852)
T 4fdd_A 842 LKERLAA 848 (852)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876653
No 3
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.56 E-value=1.5e-09 Score=144.86 Aligned_cols=818 Identities=13% Similarity=0.109 Sum_probs=422.8
Q ss_pred CCCChHHhHHHHHHHHHHHHHHhhCCCCCChHhHHHHHHhhhhhhhCCCCCCCCchhHHHHHHHhhhhccCcChH-----
Q 039448 29 SSSAQEEHQHLCAAIGAMSQELKDQNLPLTPISYFGATCSSLDRLLSSPDPDRSSHIIGSLSTILSLLLPKISVA----- 103 (1276)
Q Consensus 29 ~~S~~~~~k~~~avLaAv~e~i~~q~~~~t~t~YFaAlms~L~~~~~~~~~~~~~~~~~a~lyLL~lv~p~vP~~----- 103 (1276)
..++....|+.++. ++..... +.+ ..|...++..|-....++ ++.+-.+.+..|+-+...++..
T Consensus 57 L~d~~~~vR~~A~~--~L~~l~~--~~~---~~~~~~i~~~Ll~~l~d~----~~~vR~~a~~~L~~i~~~l~~~~~~~~ 125 (1230)
T 1u6g_C 57 LEDKNGEVQNLAVK--CLGPLVS--KVK---EYQVETIVDTLCTNMLSD----KEQLRDISSIGLKTVIGELPPASSGSA 125 (1230)
T ss_dssp TTCSSHHHHHHHHH--HHHHHHT--TSC---HHHHHHHHHHHHHHTTCS----SSHHHHHHHHHHHHHHHHCC-----CC
T ss_pred hcCCCHHHHHHHHH--HHHHHHH--hCC---HHHHHHHHHHHHHHhcCC----cHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 44555555555322 3344432 222 256555555444432221 3344445556666666655543
Q ss_pred HHhhhhhhHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhccCCCCCcchhhHHHHHHhhccCCchhHHHHHHHHHHHHHh
Q 039448 104 VLKKKGDFLTDLVVRVVRLSSVTAGAVASGLTSLSRLLTGRGRVNWSDVSQLYGVVLAFMTDSRLKVRRQSHLCVREILL 183 (1276)
Q Consensus 104 vLr~kf~~~~~~l~~~l~~~~~~~~~lRs~i~CL~~LL~aqd~~~W~~~~~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~ 183 (1276)
....-..+++..|...+.. +.+......++.||..++.......=.+....+..|+..--|+.|.||++|-.|+..+..
T Consensus 126 ~~~~~~~~llp~L~~~l~~-~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~ 204 (1230)
T 1u6g_C 126 LAANVCKKITGRLTSAIAK-QEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVM 204 (1230)
T ss_dssp THHHHHHHHHHHHHHHHSC-CSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 2222344555555555543 234445557888888887532221112445588888888889999999999999999886
Q ss_pred ccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhccCCCchhHHHHHHHHHHhhccCchhH
Q 039448 184 SLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECLPLMSTKYTAVILKYFKTLLELRQPLV 263 (1276)
Q Consensus 184 ~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~~~~~~~~~~i~~~ll~Ll~l~n~~l 263 (1276)
.... .... .+...+.+.+..... ...-..++.+|+.+-...|..-......+.+.++..+.-.++-+
T Consensus 205 ~~~~-~~~~----~~l~~l~~~L~~~~~--------~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~v 271 (1230)
T 1u6g_C 205 SCGN-IVFV----DLIEHLLSELSKNDS--------MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDEL 271 (1230)
T ss_dssp TC-----CT----THHHHHHHHHHHTCS--------SCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTT
T ss_pred hcCH-HHHH----HHHHHHHHHhccCCc--------hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 4321 1111 122333344421100 11123456666665554432112345678889999888888999
Q ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCC---------------------Cc---------hhhHHHHHH
Q 039448 264 TRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNE---------------------TS---------ADAMTFTAR 313 (1276)
Q Consensus 264 t~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~---------------------~~---------~~~l~~~~~ 313 (1276)
...++++|..+....+..+. .-+.+++..+..+....+ +. .+...|-.|
T Consensus 272 R~~a~~~l~~l~~~~~~~~~-~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR 350 (1230)
T 1u6g_C 272 REYCIQAFESFVRRCPKEVY-PHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVR 350 (1230)
T ss_dssp HHHHHHHHHHHHHCTTCCCH-HHHHHHHHHHTTCCCCC------------------------------------CTTHHH
T ss_pred HHHHHHHHHHHHHHChHHHH-HhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHH
Confidence 99999999999887665553 234555555443322100 00 000011111
Q ss_pred -HHHHHHHHHHhcCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcC-CCC
Q 039448 314 -LLNVGMIKIYSINREICSTKLPIVFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDAR-KSG 391 (1276)
Q Consensus 314 -vl~~a~~~l~~~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~-~~~ 391 (1276)
.-..++..++..-+......++.++..+..+|...+++|+.++.++|..++..+-...-...+..+. ....+. ..-
T Consensus 351 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 428 (1230)
T 1u6g_C 351 RAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAM--EQGETPLTML 428 (1230)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC--------------CCCHHHHH
T ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCcccc--ccccchHHHH
Confidence 0112334444433433445566667777778888889999999999988876432100000000000 000000 000
Q ss_pred hHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhhcCCCCCCcchhHHHHHHHHHHHhc
Q 039448 392 PTVIEKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQNLPDEDFPYRKQLHECVGSAVGSM 471 (1276)
Q Consensus 392 ~~~i~~i~~~~~~~L~~~y~~aw~~vL~vl~~lf~~lg~~~~~~l~~~L~~l~~lr~~~~~~f~~~~~ld~~iGaAi~am 471 (1276)
...+..|+..+...|.-.....-..++..++.+...++....+++..++..|-++-..+......+.++=.+++..+..+
T Consensus 429 ~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~ 508 (1230)
T 1u6g_C 429 QSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNH 508 (1230)
T ss_dssp HHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhC
Confidence 13344555555555542221222347777888888877666677888887776654422111133444455666666667
Q ss_pred ChhhHhhcccCccccCcccccccchhhhhhhccCCCChHhHHHHHHHHHHHHHHHhHHhhhhccchhhhhHHHHHHHHHh
Q 039448 472 GPETFLCLLPLKLEASDLSEVNVWLFPILKQYIIGARLNFFMEKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWS 551 (1276)
Q Consensus 472 GPe~vL~~lPLnl~~~~~~~~RaWLLPlLr~~i~~t~L~fF~~~~lPLa~~~~~k~~~~~~~~~~~~ak~~~tL~~QlWs 551 (1276)
||+.+...++- ++|.|-..+..... -+ ...+ ...+..++..+=.
T Consensus 509 ~~~~~~~~l~~-------------llp~L~~~l~d~~~--~v----------~~~a-----------l~~l~~l~~~~~~ 552 (1230)
T 1u6g_C 509 SPQVFHPHVQA-------------LVPPVVACVGDPFY--KI----------TSEA-----------LLVTQQLVKVIRP 552 (1230)
T ss_dssp CGGGGHHHHTT-------------THHHHHHHHTCSSH--HH----------HHHH-----------HHHHHHHHHHHCC
T ss_pred CHHHHHhHHHH-------------HHHHHHHHHcccch--HH----------HHHH-----------HHHHHHHHHHhcC
Confidence 77654433221 23333221111000 00 0000 0011111111100
Q ss_pred hhhCCCCCCcchhhhHHHHHHHHHHHh--c-cCcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChH
Q 039448 552 LLPSFCNYPVDTAESFMDLAGVLCSAL--H-EENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTK 628 (1276)
Q Consensus 552 LLPgFC~~P~D~~~sF~~lA~~L~~~L--~-~~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 628 (1276)
++- ..+.++...+..+-+.|...| + ..+++|...+.+|..|+......
T Consensus 553 --~~~-~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~-------------------------- 603 (1230)
T 1u6g_C 553 --LDQ-PSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDN-------------------------- 603 (1230)
T ss_dssp --SSS-CCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGG--------------------------
T ss_pred --ccc-ccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCch--------------------------
Confidence 000 124566666777888877777 3 35689999999999998764110
Q ss_pred HHHHhHHHHHHhhHhHHHHHHHhhcCCCccccccHHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHHhcccccccC
Q 039448 629 VATDNLNVLKSSARELLSILSRIFLESAKDEGGCLQSTIGDFASIAD---KEIVTRLFKRTMHRLLEATQEAGKTKSTRK 705 (1276)
Q Consensus 629 ~A~~nl~~L~~~A~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~---~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~ 705 (1276)
+..+-..+++.|....... ..|. .+++++-.|+. +..+..++..++..|......
T Consensus 604 --------~~~~~~~~l~~L~~~l~~e--~~r~---~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~--------- 661 (1230)
T 1u6g_C 604 --------LGSDLPNTLQIFLERLKNE--ITRL---TTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRK--------- 661 (1230)
T ss_dssp --------CCTHHHHHHHHHHHHTTSS--SHHH---HHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTS---------
T ss_pred --------hhhhHHHHHHHHHHHhccc--hhHH---HHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHh---------
Confidence 0012245666666655432 1222 34444433332 112234455555555443310
Q ss_pred CCcccccCCCCCCCchhhHhHHHHHHHHHcC----CCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhh
Q 039448 706 SNSMQIDDSSNESSPDFMRARLFDLALSLLP----GLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLS 781 (1276)
Q Consensus 706 ~~~~~~~~~~~~~~~~~~~~~llDL~~alv~----~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~ 781 (1276)
.....|...+..+..|+. .++.+.+..++..+.|.+.+.|....+.+|.+|..+++.....+.
T Consensus 662 -------------~~~~~r~~a~~al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~ 728 (1230)
T 1u6g_C 662 -------------NQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLS 728 (1230)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGG
T ss_pred -------------CCHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCchhHH
Confidence 112344444444444443 345566666666666777778888889999999999985544333
Q ss_pred hhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCC-----hH-------------------HHHhhhHHHHHHHH
Q 039448 782 SRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDD-----SE-------------------QRRSYILSSFLTEI 837 (1276)
Q Consensus 782 ~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~-----~~-------------------~~~~~~i~~~lpEi 837 (1276)
.+...+...++..+.+... ....+.++..++..+.... .+ .+....+...++.+
T Consensus 729 ~~~~~~l~~~~~~l~~~~~--~~~~~~~l~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~ 806 (1230)
T 1u6g_C 729 KISGSILNELIGLVRSPLL--QGGALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAAL 806 (1230)
T ss_dssp GTTTTTHHHHHHHHTCTTC--CHHHHHHHHHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHH
T ss_pred HhHHhHHHHHHHHHcCccc--chHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhccccCCCCccccchhhHHHHHHHHHH
Confidence 3333333333333222111 1112233322222221110 00 00012233444444
Q ss_pred HHHhhh-----------------hhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHH
Q 039448 838 ILALKE-----------------ANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKG 900 (1276)
Q Consensus 838 IL~~Ke-----------------~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~A 900 (1276)
+..+.+ .+...|..+.-+|-++|.... - ....+++..+...|...++....++..|
T Consensus 807 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~-~------~~~~~l~~~~~~~l~~~~~~Vr~aAa~a 879 (1230)
T 1u6g_C 807 TRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHID-L------SGQLELKSVILEAFSSPSEEVKSAASYA 879 (1230)
T ss_dssp HHHSCCCSHHHHTTTTTTTTTTTCCHHHHHHHHHHHHHHHHHSC-C------CSCTHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred HHhcchhhHHHHHHHHHHhCCCCccHHHHHHHHHHHHHhcccCC-C------cccccHHHHHHHHhCCCCHHHHHHHHHH
Confidence 433222 244556666667777776431 1 0123466777778888889999999999
Q ss_pred HHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 039448 901 LARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIK 980 (1276)
Q Consensus 901 LsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr 980 (1276)
|++++... +..+++.++-.+.+. .+.--..+.=+|-++...+.+.+.++++.|++.|+....+.-...|..+-
T Consensus 880 Lg~l~~~~------~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~~~~~~i~~~L~~~~~~~~~~~r~~~a 952 (1230)
T 1u6g_C 880 LGSISVGN------LPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVA 952 (1230)
T ss_dssp HHHHHHHT------HHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTHHHHHHHHHHHTTCCCCSSTTHHHHHH
T ss_pred hHHHhccC------HHHHHHHHHHHHhcc-chhhHHHHHHHHHHHhcCChhhHHhhHHHHHHHHHHHhcCcchhhHHHHH
Confidence 99998543 223344444444432 23333456666667777888999999999999998876543344666777
Q ss_pred HHHHHHHHhc
Q 039448 981 LLLEMLVKKC 990 (1276)
Q Consensus 981 ~IlerLIRKf 990 (1276)
.+|.+|+.-.
T Consensus 953 ~~lg~l~~~~ 962 (1230)
T 1u6g_C 953 ECLGKLTLID 962 (1230)
T ss_dssp HHHHHHHHSS
T ss_pred HHHhhhhccC
Confidence 7777777653
No 4
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=99.56 E-value=1.2e-09 Score=139.16 Aligned_cols=728 Identities=11% Similarity=0.085 Sum_probs=401.6
Q ss_pred HHHHHhhc-cCCchhHHHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHH
Q 039448 156 YGVVLAFM-TDSRLKVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALK 234 (1276)
Q Consensus 156 ~~~LL~f~-~d~RPKVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk 234 (1276)
+..+|.-+ .++-+-+|++|.+.+...-++- +|. ....+.+.+. .. +.....=.-+..+||
T Consensus 6 l~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~------~~~---~~~~l~~il~---~~-------~~~~~vR~~A~~~lk 66 (861)
T 2bpt_A 6 FAQLLENSILSPDQNIRLTSETQLKKLSNDN------FLQ---FAGLSSQVLI---DE-------NTKLEGRILAALTLK 66 (861)
T ss_dssp HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHC------HHH---HHHHHHHHHT---CT-------TSCHHHHHHHHHHHH
T ss_pred HHHHHHHcccCcCHHHHHHHHHHHHHHHhhC------HHH---HHHHHHHHHh---CC-------CCChHHHHHHHHHHH
Confidence 45566667 8899999999999998855420 011 1112222221 00 001111112233444
Q ss_pred hhc---------------cC-CCchhHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHhccc
Q 039448 235 ECL---------------PL-MSTKYTAVILKYFKTLLELRQPLVTRRVTDALNVICLHP-TLEVSAEALLDLLCSLALS 297 (1276)
Q Consensus 235 ~~l---------------~~-~~~~~~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~-~~~l~~~~~~~li~aL~~~ 297 (1276)
..+ +. ++......|-+.++..+.-.++.+...+-+++..++... +..-.++.+..++..+..
T Consensus 67 ~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~- 145 (861)
T 2bpt_A 67 NELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGA- 145 (861)
T ss_dssp TTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTST-
T ss_pred hhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhc-
Confidence 443 22 566666778888888888888999999999998887543 222346667777766532
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHh-cCHhH--HhhhhhHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHhhchhH
Q 039448 298 VSTNETSADAMTFTARLLNVGMIKIYS-INREI--CSTKLPIVFNALKDILASE--HEEAIFAATEALKNLINACIDESL 372 (1276)
Q Consensus 298 ~~~~~~~~~~l~~~~~vl~~a~~~l~~-~~~~~--c~~~LP~~f~~~~~~l~S~--~~~v~~~as~~L~~li~~ci~~~~ 372 (1276)
..+..-....+ .++ ..+.. +.+.. -..+++.++..+...|.++ +.+|+.+|.+||..++. ++.+.+
T Consensus 146 ---~~~~~~r~~al-~~l----~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~-~~~~~~ 216 (861)
T 2bpt_A 146 ---EQPENVKRASL-LAL----GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLI-FIKNNM 216 (861)
T ss_dssp ---TSCHHHHHHHH-HHH----HHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGG-GCHHHH
T ss_pred ---CCCHHHHHHHH-HHH----HHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH-HHHHHc
Confidence 10111111111 111 11111 22221 1346778888888888887 88999999999987653 233221
Q ss_pred HhhhcccccccCCCcCCCChHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHhhcccchhhHH-HHHHHHHhhhcCCC
Q 039448 373 IKQGVDQITNVNSDARKSGPTVIEKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYSSYFMR-GALKNLADMQNLPD 451 (1276)
Q Consensus 373 ~~~~v~~~~~~~~~~~~~~~~~i~~i~~~~~~~L~~~y~~aw~~vL~vl~~lf~~lg~~~~~~l~-~~L~~l~~lr~~~~ 451 (1276)
... .....+...+...+...-...-..++.++..+.+..+....|++. .++..+-.... +
T Consensus 217 ~~~-----------------~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~--~ 277 (861)
T 2bpt_A 217 ERE-----------------GERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMK--S 277 (861)
T ss_dssp TSH-----------------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTT--C
T ss_pred cCh-----------------hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--C
Confidence 100 001112222222232211122234566666666666655555555 55554433332 2
Q ss_pred CCCcchhHHHHHHHHHHHhcC----------------hh----hHhhcccCcc----ccCcccccccch--------hhh
Q 039448 452 EDFPYRKQLHECVGSAVGSMG----------------PE----TFLCLLPLKL----EASDLSEVNVWL--------FPI 499 (1276)
Q Consensus 452 ~~f~~~~~ld~~iGaAi~amG----------------Pe----~vL~~lPLnl----~~~~~~~~RaWL--------LPl 499 (1276)
.+...+.++-.+++..+.... |. .+-.++|.=+ +.+.-.+...|- |--
T Consensus 278 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~ 357 (861)
T 2bpt_A 278 PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQL 357 (861)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHH
Confidence 233344444444444433321 00 0011222111 000001112241 111
Q ss_pred hhhccCCCChHhHHHHHHHHHHHHHHHhHHhhhhccchhhhhHHHHHHHHHhhhhCCCCCC--cchhhhHHHHHHHHHHH
Q 039448 500 LKQYIIGARLNFFMEKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLPSFCNYP--VDTAESFMDLAGVLCSA 577 (1276)
Q Consensus 500 Lr~~i~~t~L~fF~~~~lPLa~~~~~k~~~~~~~~~~~~ak~~~tL~~QlWsLLPgFC~~P--~D~~~sF~~lA~~L~~~ 577 (1276)
|-.+.. ...+..++|.....-+ ...|.....-+|. |-..+..+ ..+...+..+-+.|...
T Consensus 358 l~~~~~----~~~~~~l~~~l~~~l~-------------~~~~~~r~~a~~~-l~~i~~~~~~~~~~~~l~~il~~l~~~ 419 (861)
T 2bpt_A 358 FAQNCG----NHILEPVLEFVEQNIT-------------ADNWRNREAAVMA-FGSIMDGPDKVQRTYYVHQALPSILNL 419 (861)
T ss_dssp HHHHHG----GGGHHHHHHHHHHHTT-------------CSSHHHHHHHHHH-HHHTSSSSCHHHHHHHHHHHHHHHHHG
T ss_pred HHHHcc----HhHHHHHHHHHHHHcC-------------CCChhHHHHHHHH-HHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 111111 1112233333222110 1123333333332 33444433 23444445666667677
Q ss_pred hcc-CcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHHHHHHHhhcCCC
Q 039448 578 LHE-ENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLSILSRIFLESA 656 (1276)
Q Consensus 578 L~~-~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~vLfNvy~~~~ 656 (1276)
+.+ +|.+|..+|.+|-.+........ . . ..+-..++|.|++.+...
T Consensus 420 l~d~~~~vr~~a~~~l~~l~~~~~~~~--~-~-----------------------------~~~~~~~l~~l~~~l~~~- 466 (861)
T 2bpt_A 420 MNDQSLQVKETTAWCIGRIADSVAESI--D-P-----------------------------QQHLPGVVQACLIGLQDH- 466 (861)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHHHGGGS--C-T-----------------------------TTTHHHHHHHHHHHHTSC-
T ss_pred cCCCcHHHHHHHHHHHHHHHHHhhhhc--C-C-----------------------------HHHHHHHHHHHHHHhccC-
Confidence 764 67899999998888875531100 0 0 012346778888776543
Q ss_pred ccccccHHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHhHHHHHHHH
Q 039448 657 KDEGGCLQSTIGDFASIAD---KEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFDLALS 733 (1276)
Q Consensus 657 ~~~~~~~~~tI~ay~sI~~---~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~a 733 (1276)
+..+.....++..++..++ ++.+..++..++..|....... + .....+...++.+..
T Consensus 467 ~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~--------d------------~~~~vr~~a~~al~~ 526 (861)
T 2bpt_A 467 PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI--------D------------NEFNARASAFSALTT 526 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS--------C------------CGGGHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc--------C------------cchHHHHHHHHHHHH
Confidence 3334444445555554433 3455667777777777665210 0 112467777787777
Q ss_pred HcCCCChhh---HHHHHHHHhhhhc---------------CCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhC
Q 039448 734 LLPGLNAKE---IDVLFVAIKPALQ---------------DDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVL 795 (1276)
Q Consensus 734 lv~~l~~~~---~~~Lf~~~~~~l~---------------~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~ 795 (1276)
++...+.+. +..+...+...+. +....+|..+...|..+++.....+..+++.+...++..+
T Consensus 527 l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l 606 (861)
T 2bpt_A 527 MVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLL 606 (861)
T ss_dssp HHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHH
T ss_pred HHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 777766542 2222222222222 1134567889999999998655556677888888887776
Q ss_pred CCCCc-cchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 039448 796 PSCHF-SAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKEN 874 (1276)
Q Consensus 796 ~~~~~-~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~ 874 (1276)
..... .-+..=+.++..++..+... ...+++.++|-++-++++.+...|..|..++..|++.+... -..-
T Consensus 607 ~~~~~~~v~~~~~~~l~~l~~~~~~~-----~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~----~~~~ 677 (861)
T 2bpt_A 607 EKKDSAFIEDDVFYAISALAASLGKG-----FEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEED----FRRY 677 (861)
T ss_dssp HSTTGGGTHHHHHHHHHHHHHHHGGG-----GHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGG----GHHH
T ss_pred ccCCCCcHHHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchh----ccch
Confidence 65444 44555555666665443221 24577888887777778788889999999999999877431 1223
Q ss_pred HHHHHHHHhhhccCCC--hhHHHHHHHHHHHHHHHhhhhhH-HHHHhhhHHHHHhccCC-----------HHHHHHHHHH
Q 039448 875 LYQFFNMVAGGLAGES--PHMISAAVKGLARLAYEFSDLVS-NVYKLLPSTFLLLQRKN-----------REIIKANLGL 940 (1276)
Q Consensus 875 l~ef~~mV~aGLaG~t--phMiSatI~ALsrLl~ef~d~i~-~~~~ll~~v~llL~s~~-----------REIvKsaLgF 940 (1276)
+..++..+..+|.... +....+++.+++.++..+++.+. .+..+++.+...+.... .+|..+++..
T Consensus 678 ~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~ 757 (861)
T 2bpt_A 678 SDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKPENGTLEALDYQIKVLEAVLDA 757 (861)
T ss_dssp HHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHH
Confidence 4555556666776543 77999999999999998876544 46677777766665421 3455677777
Q ss_pred HHHHHhhcC--hhHHHHHHHHHHHHHhhcchhh----HHHHHHHHHHHHHHHHHhcCHHHHHhcCCHH-HHHHHHHHH
Q 039448 941 LKVLVAKSH--AEGLQIHLASMVEGLLKWQDDT----KNQFKSKIKLLLEMLVKKCGLDAVKAVMPEE-HMKLLKNIR 1011 (1276)
Q Consensus 941 vKV~v~~lp--~~~l~~~L~~lv~~Ll~ws~d~----k~hfR~KVr~IlerLIRKfG~e~V~~~~Pee-~~KlL~nIr 1011 (1276)
+-.++..+. .+.+.+|++.+++-|.....|. ....|...-..|..|++.+|-+.+..++|.+ ..-+|++.+
T Consensus 758 ~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~~~~~~~vr~~a~~~l~~l~~~~~g~~~~~~~~~~~~~~ll~~l~ 835 (861)
T 2bpt_A 758 YVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQLYSEDATSRAAVGLIGDIAAMFPDGSIKQFYGQDWVIDYIKRTR 835 (861)
T ss_dssp HHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHHHHTSHHHHHHHHHHHHHHHHHCTTSTTGGGTTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHHHcCCchHHHHHhcHHHHHHHHHHh
Confidence 777777776 4789999999999887765431 4456767778999999999444567777744 334555544
No 5
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=99.55 E-value=2.6e-11 Score=161.86 Aligned_cols=610 Identities=13% Similarity=0.160 Sum_probs=340.8
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCH
Q 039448 248 ILKYFKTLLELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINR 327 (1276)
Q Consensus 248 i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~ 327 (1276)
+..++..+. -.++-+...|++-+..........+++....+++..|.....+.+......+. . ++..++..-+
T Consensus 8 l~~lL~~l~-s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~--~----~L~~l~~~~~ 80 (1230)
T 1u6g_C 8 ISNLLEKMT-SSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAV--K----CLGPLVSKVK 80 (1230)
T ss_dssp HHHHHHHTT-CSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHH--H----HHHHHHTTSC
T ss_pred HHHHHHhcC-CCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHH--H----HHHHHHHhCC
Confidence 444445443 34555666666666555544433444444444444444444432221111111 1 2233333222
Q ss_pred hHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCCCChHHHHHHHHHHHhhhh
Q 039448 328 EICSTKLPIVFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGPTVIEKICATVESLLD 407 (1276)
Q Consensus 328 ~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~~~~~~i~~i~~~~~~~L~ 407 (1276)
. ..++.++..+...|.++++.+|.+|.++|..+...+-++.. + ..........++..+...++
T Consensus 81 ~---~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~---~-----------~~~~~~~~~~llp~L~~~l~ 143 (1230)
T 1u6g_C 81 E---YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS---G-----------SALAANVCKKITGRLTSAIA 143 (1230)
T ss_dssp H---HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-------------------CCTHHHHHHHHHHHHHHHHS
T ss_pred H---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc---c-----------cchHHHHHHHHHHHHHHHHc
Confidence 2 57888899999999999999999999999987765433210 0 00011233444444444443
Q ss_pred -cchhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhhcCCCCCCcchhHHHHHHHHHHHhcChhhHhhcccCcccc
Q 039448 408 -YHYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQNLPDEDFPYRKQLHECVGSAVGSMGPETFLCLLPLKLEA 486 (1276)
Q Consensus 408 -~~y~~aw~~vL~vl~~lf~~lg~~~~~~l~~~L~~l~~lr~~~~~~f~~~~~ld~~iGaAi~amGPe~vL~~lPLnl~~ 486 (1276)
......-..++.++..+.+..|....|++..++..+-.... +++...|..+-.++|..+..+|.+.+-.++|
T Consensus 144 ~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~--~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~----- 216 (1230)
T 1u6g_C 144 KQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLT--SPRLAVRKRTIIALGHLVMSCGNIVFVDLIE----- 216 (1230)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGG--CSSHHHHHHHHHHHHHHTTTC----CTTHHH-----
T ss_pred CCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHhcCHHHHHHHHH-----
Confidence 22223445777788888877788777888888888877665 3345667777777777777666542111111
Q ss_pred CcccccccchhhhhhhccCCCChHhHHHHHHHHHHHHHHHhHHhhhhccchhhhhHHHHHHHHHhhhhCCCCCCcchhhh
Q 039448 487 SDLSEVNVWLFPILKQYIIGARLNFFMEKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLPSFCNYPVDTAES 566 (1276)
Q Consensus 487 ~~~~~~RaWLLPlLr~~i~~t~L~fF~~~~lPLa~~~~~k~~~~~~~~~~~~ak~~~tL~~QlWsLLPgFC~~P~D~~~s 566 (1276)
+|++.|++ . . ...+... ..+.|+.+...+ |..+...
T Consensus 217 --------~l~~~L~~-----------------------~----~--~~~~r~~-----a~~~l~~l~~~~--~~~~~~~ 252 (1230)
T 1u6g_C 217 --------HLLSELSK-----------------------N----D--SMSTTRT-----YIQCIAAISRQA--GHRIGEY 252 (1230)
T ss_dssp --------HHHHHHHH-----------------------T----C--SSCSCTT-----HHHHHHHHHHHS--SGGGTTS
T ss_pred --------HHHHHhcc-----------------------C----C--chhHHHH-----HHHHHHHHHHHh--HHHHHHH
Confidence 12222211 1 0 0011111 134444443332 3344444
Q ss_pred HHHHHHHHHHHhc-cCcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHH
Q 039448 567 FMDLAGVLCSALH-EENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELL 645 (1276)
Q Consensus 567 F~~lA~~L~~~L~-~~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L 645 (1276)
+..+-+.+...+. +++++|...+.+|..++..... + +..|-..++
T Consensus 253 l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~----~------------------------------~~~~l~~li 298 (1230)
T 1u6g_C 253 LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK----E------------------------------VYPHVSTII 298 (1230)
T ss_dssp CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC----C------------------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH----H------------------------------HHHhHHHHH
Confidence 4556666666665 4678888888888888754210 0 001112223
Q ss_pred HHHHHhhcCCC-------------------------------------ccccccHHHHHHHhhccCCHHHHHHHHHHHHH
Q 039448 646 SILSRIFLESA-------------------------------------KDEGGCLQSTIGDFASIADKEIVTRLFKRTMH 688 (1276)
Q Consensus 646 ~vLfNvy~~~~-------------------------------------~~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~ 688 (1276)
|.|++.....+ ...|....+++..++...+ +.+..+|..++.
T Consensus 299 ~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~-~~~~~~~~~l~~ 377 (1230)
T 1u6g_C 299 NICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPEFYKTVSP 377 (1230)
T ss_dssp HHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHHHHTTTHH
T ss_pred HHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHH
Confidence 33332221100 0012233355555555333 233444444443
Q ss_pred HHHHHHHHhcccccccCCCcccccCCCCCCCchhhHhHHHH----HHHHHcCCC-------------C-----hhhHHHH
Q 039448 689 RLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRARLFD----LALSLLPGL-------------N-----AKEIDVL 746 (1276)
Q Consensus 689 kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llD----L~~alv~~l-------------~-----~~~~~~L 746 (1276)
.|.....+ ..+..|...+. ++..+.... + ...+..+
T Consensus 378 ~l~~~l~d----------------------~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 435 (1230)
T 1u6g_C 378 ALISRFKE----------------------REENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNI 435 (1230)
T ss_dssp HHHSTTSC----------------------SSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHH
T ss_pred HHHHHcCC----------------------CchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHH
Confidence 33221100 11234433333 333322211 0 1123344
Q ss_pred HHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHH
Q 039448 747 FVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRR 826 (1276)
Q Consensus 747 f~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~ 826 (1276)
+..+...+++++..++..++.+|..+++.+.+.+..++++|...+...+..... .+.-|..++..+...+.... ....
T Consensus 436 l~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~-~~~v~~~a~~~l~~~~~~~~-~~~~ 513 (1230)
T 1u6g_C 436 VKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSS-SSNLKIDALSCLYVILCNHS-PQVF 513 (1230)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSS-CHHHHHHHHHHHHHHHHSSC-GGGG
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCC-cchHHHHHHHHHHHHHHhCC-HHHH
Confidence 445555578888888888999999999988778888999999999988775443 34455555554433221111 1113
Q ss_pred hhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHH----HHHHHHhhhc--cCCChhHHHHHHHH
Q 039448 827 SYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLY----QFFNMVAGGL--AGESPHMISAAVKG 900 (1276)
Q Consensus 827 ~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~----ef~~mV~aGL--aG~tphMiSatI~A 900 (1276)
..++..++|-++-+..+.|.+.|..|...+..+.+.+.... ......+. .++..+...| ....+....+++.+
T Consensus 514 ~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~-~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~ 592 (1230)
T 1u6g_C 514 HPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLD-QPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISC 592 (1230)
T ss_dssp HHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSS-SCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcc-cccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 45788899999989999999999999999999999886521 11122344 4444555556 44557789999999
Q ss_pred HHHHHHHhhhhhH----H-------------------------------------HHHhhhHHHHHhccCCHHHHHHHHH
Q 039448 901 LARLAYEFSDLVS----N-------------------------------------VYKLLPSTFLLLQRKNREIIKANLG 939 (1276)
Q Consensus 901 LsrLl~ef~d~i~----~-------------------------------------~~~ll~~v~llL~s~~REIvKsaLg 939 (1276)
|+.|+..+++.+. . +.++++.+..++.+.++.+..++++
T Consensus 593 lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~r~~a~~ 672 (1230)
T 1u6g_C 593 MGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLS 672 (1230)
T ss_dssp HHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999987654321 1 1233444556777889999999999
Q ss_pred HHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCH
Q 039448 940 LLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGL 992 (1276)
Q Consensus 940 FvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~ 992 (1276)
.+..++...+...-.+++..++..++..-.+.-.+.+..+-.+|.+|+++.|-
T Consensus 673 al~~l~~~~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~ 725 (1230)
T 1u6g_C 673 ALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPS 725 (1230)
T ss_dssp HHHHHHHHCCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGG
T ss_pred HHHHHHhcccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHhCch
Confidence 99999999886554555666666555552222335666788889999988763
No 6
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.47 E-value=1.4e-08 Score=129.56 Aligned_cols=726 Identities=12% Similarity=0.072 Sum_probs=375.9
Q ss_pred HHHHhhccCCchhHHHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhh
Q 039448 157 GVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKEC 236 (1276)
Q Consensus 157 ~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~ 236 (1276)
..+|.-+.++.+-||+.|...+...-.+ ++ +.+...+.+.+. . . ......+ .-+..+||..
T Consensus 4 ~~~L~~~~s~d~~~r~~A~~~L~~~~~~-------~~--~~~~~~L~~~l~--~-~------~~~~~vR-~~a~~~Lk~~ 64 (876)
T 1qgr_A 4 ITILEKTVSPDRLELEAAQKFLERAAVE-------NL--PTFLVELSRVLA--N-P------GNSQVAR-VAAGLQIKNS 64 (876)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHH-------HH--HHHHHHHHHHHH--C-T------TSCHHHH-HHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhc-------Ch--hhHHHHHHHHHh--C-C------CCCHHHH-HHHHHHHHHh
Confidence 4566667789999999999999875432 00 111222333332 1 0 0001101 1112233332
Q ss_pred c---------------cCCCchhHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCC-CCCCCHHHHHHHHHHhcccCCC
Q 039448 237 L---------------PLMSTKYTAVILKYFKTLLELRQPLVTRRVTDALNVICLHP-TLEVSAEALLDLLCSLALSVST 300 (1276)
Q Consensus 237 l---------------~~~~~~~~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~-~~~l~~~~~~~li~aL~~~~~~ 300 (1276)
+ +.++......+-..++..+.-.++.+ ..+.+++..++... +..-.++.+..++..+.+
T Consensus 65 i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~---- 139 (876)
T 1qgr_A 65 LTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTN---- 139 (876)
T ss_dssp HCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHC----
T ss_pred ccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhC----
Confidence 2 44677777777778888887777777 88888888877532 112234455555555532
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHh-cCHhHHhhhhhHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHhhchhHH----
Q 039448 301 NETSADAMTFTARLLNVGMIKIYS-INREICSTKLPIVFNALKDILASE--HEEAIFAATEALKNLINACIDESLI---- 373 (1276)
Q Consensus 301 ~~~~~~~l~~~~~vl~~a~~~l~~-~~~~~c~~~LP~~f~~~~~~l~S~--~~~v~~~as~~L~~li~~ci~~~~~---- 373 (1276)
...........+. ++..+.. .+++.-...+|.++..+..++.++ +.+++..|.+||..++. ++.+++.
T Consensus 140 ~~~~~~~r~~al~----~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~-~~~~~~~~~~~ 214 (876)
T 1qgr_A 140 PNSTEHMKESTLE----AIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE-FTKANFDKESE 214 (876)
T ss_dssp TTCCHHHHHHHHH----HHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG-GCHHHHTSHHH
T ss_pred CCCCHHHHHHHHH----HHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH-HHHHHHHhHHH
Confidence 1001111111111 2222221 345555677899999998889876 68999999999987764 2333221
Q ss_pred ----hhhcccccccCCCcCCCChHHHHHHHHHHHhhhhcchhhhHHHHH-HHHHHHHHhhcccchhhHHHHHHHHHhhhc
Q 039448 374 ----KQGVDQITNVNSDARKSGPTVIEKICATVESLLDYHYSAVWDMAF-QIVSTMFDKLGTYSSYFMRGALKNLADMQN 448 (1276)
Q Consensus 374 ----~~~v~~~~~~~~~~~~~~~~~i~~i~~~~~~~L~~~y~~aw~~vL-~vl~~lf~~lg~~~~~~l~~~L~~l~~lr~ 448 (1276)
...+.... ...++.+-...+..+..+....+...-+++- .++..++..++.........++..+..+-.
T Consensus 215 ~~~il~~l~~~~------~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~ 288 (876)
T 1qgr_A 215 RHFIMQVVCEAT------QCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (876)
T ss_dssp HHHHHHHHHHHT------TCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc------CCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 10000000 0011222233344444444332222222333 333333333322211111111111111100
Q ss_pred C-----------------C-CCCCcc-hhHHHHHHHHHHHhcChhhHhhcccCccccCcccccccc--------hhhhhh
Q 039448 449 L-----------------P-DEDFPY-RKQLHECVGSAVGSMGPETFLCLLPLKLEASDLSEVNVW--------LFPILK 501 (1276)
Q Consensus 449 ~-----------------~-~~~f~~-~~~ld~~iGaAi~amGPe~vL~~lPLnl~~~~~~~~RaW--------LLPlLr 501 (1276)
. + ...+.+ +..++..+...+..|.. ..+ +. ....| .|..|-
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~---------~~~-d~--~~~~~~~r~~a~~~l~~l~ 356 (876)
T 1qgr_A 289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTK---------QDE-ND--DDDDWNPCKAAGVCLMLLA 356 (876)
T ss_dssp HHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTC---------CCS-SC--CTTCCCHHHHHHHHHHHHH
T ss_pred HHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhc---------ccc-cc--cccccHHHHHHHHHHHHHH
Confidence 0 0 000011 11122222222222211 100 00 11234 333333
Q ss_pred hccCCCChHhHHHHHHHHHHHHHHHhHHhhhhccchhhhhHHHHHHHHHhhhhCCCCCCc-c-hhhhHHHHHHHHHHHhc
Q 039448 502 QYIIGARLNFFMEKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLPSFCNYPV-D-TAESFMDLAGVLCSALH 579 (1276)
Q Consensus 502 ~~i~~t~L~fF~~~~lPLa~~~~~k~~~~~~~~~~~~ak~~~tL~~QlWsLLPgFC~~P~-D-~~~sF~~lA~~L~~~L~ 579 (1276)
.+.. ..++..++|.....- . + ..|.....-+| .|-.++.... + +...+..+-+.|...|.
T Consensus 357 ~~~~----~~~~~~~l~~l~~~l------~-~------~~~~~r~~a~~-~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~ 418 (876)
T 1qgr_A 357 TCCE----DDIVPHVLPFIKEHI------K-N------PDWRYRDAAVM-AFGCILEGPEPSQLKPLVIQAMPTLIELMK 418 (876)
T ss_dssp HHHG----GGGHHHHHHHHHHHT------T-C------SSHHHHHHHHH-HHHHTSSSSCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCc----HhhHHHHHHHHHHHc------c-C------CChHHHHHHHH-HHHHHHcCCCHHHHHHHHHHHHHHHHHHhC
Confidence 3222 122444555433211 0 1 12333333344 3344444333 3 33334566666667776
Q ss_pred c-CcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHHHHHHHhhcCCCcc
Q 039448 580 E-ENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLSILSRIFLESAKD 658 (1276)
Q Consensus 580 ~-~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~vLfNvy~~~~~~ 658 (1276)
+ ++.+|...|.+|..+++....... ...+-..+|+.|++..... +.
T Consensus 419 d~~~~vr~~a~~~l~~~~~~~~~~~~--------------------------------~~~~l~~~l~~l~~~l~~~-~~ 465 (876)
T 1qgr_A 419 DPSVVVRDTAAWTVGRICELLPEAAI--------------------------------NDVYLAPLLQCLIEGLSAE-PR 465 (876)
T ss_dssp CSSHHHHHHHHHHHHHHHHHCGGGTS--------------------------------STTTHHHHHHHHHHHTTSC-HH
T ss_pred CCCHHHHHHHHHHHHHHHHhCchhcc--------------------------------cHHHHHHHHHHHHHHHcCC-HH
Confidence 4 678999999999999876421100 0112346777777776552 22
Q ss_pred ccccHHHHHHHhhccCC-------------HHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHh
Q 039448 659 EGGCLQSTIGDFASIAD-------------KEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRA 725 (1276)
Q Consensus 659 ~~~~~~~tI~ay~sI~~-------------~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1276)
.+.....++..++..+. .+.+..++..++..|........ + .....+.
T Consensus 466 v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~-----------------~--~~~~~r~ 526 (876)
T 1qgr_A 466 VASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPD-----------------G--HQNNLRS 526 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCS-----------------S--CSTTHHH
T ss_pred HHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcC-----------------c--chhhHHH
Confidence 23333334444433211 12245567777777766652100 0 1123567
Q ss_pred HHHHHHHHHcCCCChhh---HHHHHHHHhhhhc-----------CCc----hhhhhHHHHHHHHHHhcCc-chhhhhHHH
Q 039448 726 RLFDLALSLLPGLNAKE---IDVLFVAIKPALQ-----------DDE----GLIQKKAYKVLSTILRKCD-GFLSSRLEE 786 (1276)
Q Consensus 726 ~llDL~~alv~~l~~~~---~~~Lf~~~~~~l~-----------~~d----~~~QKKAYk~L~~i~~~~~-~f~~~~~~e 786 (1276)
..++.+..++...+.+. +..++..+...+. +.| +.+|..++.+|..++.... .-+..++..
T Consensus 527 ~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 606 (876)
T 1qgr_A 527 SAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDV 606 (876)
T ss_dssp HHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHH
T ss_pred HHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHH
Confidence 78888888877766542 2233333322222 223 3457788999999998655 445677888
Q ss_pred HHHHHHhhCCCCC--ccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHh
Q 039448 787 LLGLMIEVLPSCH--FSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEA-NKRTRNRAYDVLVQIGRAF 863 (1276)
Q Consensus 787 l~~~L~~~~~~~~--~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~-N~ktR~~A~~lLv~mg~~~ 863 (1276)
|...++..+.+.. ...+..=+.+|..++..+... ...++..++|-++-++++. +...|..|+.+|-.|+..+
T Consensus 607 l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~ 681 (876)
T 1qgr_A 607 VMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGE-----FLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRAL 681 (876)
T ss_dssp HHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGG-----GGGGHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhh-----HHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHH
Confidence 8888888877543 133444555666665543221 2467788888888888887 8999999999999999987
Q ss_pred ccCCCCCCcccHHHHHHHHhhhccC--CChhHHHHHHHHHHHHHHHhhhhhH-HHHHhhhHHHHHhccCC----------
Q 039448 864 GDEENGGGKENLYQFFNMVAGGLAG--ESPHMISAAVKGLARLAYEFSDLVS-NVYKLLPSTFLLLQRKN---------- 930 (1276)
Q Consensus 864 ~~~~~~~~~~~l~ef~~mV~aGLaG--~tphMiSatI~ALsrLl~ef~d~i~-~~~~ll~~v~llL~s~~---------- 930 (1276)
... -...+.+++..+...|.. .......+++.+++.++..+++... .+..+++.+...+..+.
T Consensus 682 ~~~----~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~ 757 (876)
T 1qgr_A 682 QSN----IIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDYDMVDY 757 (876)
T ss_dssp GGG----GHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHTCCCCTTCHHHHHH
T ss_pred HHh----hhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHhccCCCCChHHHHH
Confidence 532 123356677777777765 3467899999999999987755433 35556665555555432
Q ss_pred -HHHHHHHHHHHHHHHhhcC---------hhHHHHHHHHHHHHHhhcchhh--HHHHHHHHHHHHHHHHHhcCHHHHHhc
Q 039448 931 -REIIKANLGLLKVLVAKSH---------AEGLQIHLASMVEGLLKWQDDT--KNQFKSKIKLLLEMLVKKCGLDAVKAV 998 (1276)
Q Consensus 931 -REIvKsaLgFvKV~v~~lp---------~~~l~~~L~~lv~~Ll~ws~d~--k~hfR~KVr~IlerLIRKfG~e~V~~~ 998 (1276)
.++..+++.....++..+. .+.+.+|++.+++-|.....+. -...|...=..|..|++.+|.+.+..+
T Consensus 758 ~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~ 837 (876)
T 1qgr_A 758 LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLV 837 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 2455555555544444432 2678899999987765543221 235566677888999999988445444
Q ss_pred -CCHHHHHHHH
Q 039448 999 -MPEEHMKLLK 1008 (1276)
Q Consensus 999 -~Pee~~KlL~ 1008 (1276)
.+.--..++.
T Consensus 838 ~~~~~i~~ll~ 848 (876)
T 1qgr_A 838 EARPMIHELLT 848 (876)
T ss_dssp HTSHHHHHHHH
T ss_pred HhcHHHHHHHH
Confidence 3433334444
No 7
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=99.47 E-value=1.5e-08 Score=129.35 Aligned_cols=748 Identities=12% Similarity=0.115 Sum_probs=386.1
Q ss_pred hhhhHHHHHHHHhhhcCCCchhHH-HHHHHHHHHHhccC-------CCCCcchhh-----HHHHHHhhccCCchhHHHHH
Q 039448 108 KGDFLTDLVVRVVRLSSVTAGAVA-SGLTSLSRLLTGRG-------RVNWSDVSQ-----LYGVVLAFMTDSRLKVRRQS 174 (1276)
Q Consensus 108 kf~~~~~~l~~~l~~~~~~~~~lR-s~i~CL~~LL~aqd-------~~~W~~~~~-----~~~~LL~f~~d~RPKVRK~A 174 (1276)
.+..+...|..++...+ ..+.+| .+..+|...+..-+ ...|..+.+ .-..|+....++-|+| +.+
T Consensus 32 ~~~~~~~~L~~~l~~~~-~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~ 109 (876)
T 1qgr_A 32 NLPTFLVELSRVLANPG-NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSA 109 (876)
T ss_dssp HHHHHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHH
T ss_pred ChhhHHHHHHHHHhCCC-CCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHH
Confidence 34567777888887532 346677 44556666664322 245865432 4455677667788899 999
Q ss_pred HHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhc-cCCCchhHHHHHHHHH
Q 039448 175 HLCVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECL-PLMSTKYTAVILKYFK 253 (1276)
Q Consensus 175 q~av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l-~~~~~~~~~~i~~~ll 253 (1276)
-.++..|.+...+. ...| .+..++.+.+. ... .....-..++.+|.-+-.-+ |..-......+.+.+.
T Consensus 110 ~~~l~~i~~~~~~~-~~w~---~ll~~l~~~l~--~~~-----~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~ 178 (876)
T 1qgr_A 110 SQCVAGIACAEIPV-NQWP---ELIPQLVANVT--NPN-----STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAII 178 (876)
T ss_dssp HHHHHHHHHHHGGG-TCCT---THHHHHHHHHH--CTT-----CCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHH
T ss_pred HHHHHHHHHhhCcc-cccH---HHHHHHHHHHh--CCC-----CCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHH
Confidence 99999988742110 1112 12223333332 000 00111233444444332221 1111345677888888
Q ss_pred HhhccC--chhHHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCH
Q 039448 254 TLLELR--QPLVTRRVTDALNVICLHPTLEVSA----EALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINR 327 (1276)
Q Consensus 254 ~Ll~l~--n~~lt~~~~~~~~~lf~~~~~~l~~----~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~ 327 (1276)
..+.-. ++-+...++++|..+.......+.. +.+.+++..+ ..+. ....-..... .+..++...+
T Consensus 179 ~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~---~~~~--~~~vr~~a~~----~l~~l~~~~~ 249 (876)
T 1qgr_A 179 QGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEA---TQCP--DTRVRVAALQ----NLVKIMSLYY 249 (876)
T ss_dssp HHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHH---TTCS--SHHHHHHHHH----HHHHHHHHSG
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---cCCC--CHHHHHHHHH----HHHHHHHHhH
Confidence 877765 6788889999998876432211111 1234444443 2221 1111112222 2333333344
Q ss_pred hHHhhhhh-HHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcC-CCC--hHHHHHHHHHHH
Q 039448 328 EICSTKLP-IVFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDAR-KSG--PTVIEKICATVE 403 (1276)
Q Consensus 328 ~~c~~~LP-~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~-~~~--~~~i~~i~~~~~ 403 (1276)
.....+++ .+|..+...+.++.++|+..|.+.+..+...-.+...-...... +...... ... ...+..++..+-
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ll~~ll 327 (876)
T 1qgr_A 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAE--QGRPPEHTSKFYAKGALQYLVPILT 327 (876)
T ss_dssp GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HSSCCSSCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccc--cCCCccchhHHHHHHHHHHHhHHHH
Confidence 44445677 88888888888889999999999888776543211000000000 0000000 001 112333443333
Q ss_pred hhhhcch----hhhH---HHHHHHHHHHHHhhcccchhhHHHHHHHHHhhhcCCCCCCcchhHHHHHHHHHHHhcChhhH
Q 039448 404 SLLDYHY----SAVW---DMAFQIVSTMFDKLGTYSSYFMRGALKNLADMQNLPDEDFPYRKQLHECVGSAVGSMGPETF 476 (1276)
Q Consensus 404 ~~L~~~y----~~aw---~~vL~vl~~lf~~lg~~~~~~l~~~L~~l~~lr~~~~~~f~~~~~ld~~iGaAi~amGPe~v 476 (1276)
..|...- ...| ......+..+...+|.. .+..++..+.++-. +.+...|..+=.++|.....++|+.+
T Consensus 328 ~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~l~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~~ 402 (876)
T 1qgr_A 328 QTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IVPHVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQL 402 (876)
T ss_dssp HHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHHH
T ss_pred HHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---hHHHHHHHHHHHcc--CCChHHHHHHHHHHHHHHcCCCHHHH
Confidence 3332100 0112 23444555555555532 23333333333322 22333344444444444333333321
Q ss_pred hhcccCccccCcccccccchhhhhhhccCCCChHhHHHHHHHHHHHHHHHhHHhhhhccchhhhhHHHHHHHHHhhhhCC
Q 039448 477 LCLLPLKLEASDLSEVNVWLFPILKQYIIGARLNFFMEKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLPSF 556 (1276)
Q Consensus 477 L~~lPLnl~~~~~~~~RaWLLPlLr~~i~~t~L~fF~~~~lPLa~~~~~k~~~~~~~~~~~~ak~~~tL~~QlWsLLPgF 556 (1276)
.-|...++|..-.+.. .....+....+.+ ..++-..+|..
T Consensus 403 ---------------------------------~~~~~~~l~~l~~~l~------d~~~~vr~~a~~~-l~~~~~~~~~~ 442 (876)
T 1qgr_A 403 ---------------------------------KPLVIQAMPTLIELMK------DPSVVVRDTAAWT-VGRICELLPEA 442 (876)
T ss_dssp ---------------------------------HHHHHHHHHHHHHHHT------CSSHHHHHHHHHH-HHHHHHHCGGG
T ss_pred ---------------------------------HHHHHHHHHHHHHHhC------CCCHHHHHHHHHH-HHHHHHhCchh
Confidence 1122334443222110 0000010001111 12222223321
Q ss_pred CCCCcchhhhHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHH
Q 039448 557 CNYPVDTAESFMDLAGVLCSALHEENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNV 636 (1276)
Q Consensus 557 C~~P~D~~~sF~~lA~~L~~~L~~~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~ 636 (1276)
.+....+..+-+.|...|.+.+.+|...|.+|..++.......... +++. +..-..
T Consensus 443 ----~~~~~~l~~~l~~l~~~l~~~~~v~~~a~~al~~l~~~~~~~~~~~-~~~~-------------------~~~~~~ 498 (876)
T 1qgr_A 443 ----AINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEAAYEAADVA-DDQE-------------------EPATYC 498 (876)
T ss_dssp ----TSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTSCT-TSCC-------------------CCCCCS
T ss_pred ----cccHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccccc-cccc-------------------cccchh
Confidence 1234556776677777787778899999999999987642100000 0000 000012
Q ss_pred HHHhhHhHHHHHHHhhcCCCc---cccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhc-ccccccCCCccccc
Q 039448 637 LKSSARELLSILSRIFLESAK---DEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAG-KTKSTRKSNSMQID 712 (1276)
Q Consensus 637 L~~~A~n~L~vLfNvy~~~~~---~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~-~~~~~~~~~~~~~~ 712 (1276)
+..|...++|.|++++..... .-+....++|...+...+.+ ...+...++..+.+.....- .+....++ +
T Consensus 499 l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~-~~~~~~~l~~~l~~~l~~~~~~~~~~~~~-----~ 572 (876)
T 1qgr_A 499 LSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKD-CYPAVQKTTLVIMERLQQVLQMESHIQST-----S 572 (876)
T ss_dssp STTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCST-THHHHHHHHHHHHHHHHHHHTTTTSCCST-----T
T ss_pred hhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchh-hHHHHHHHHHHHHHHHHHHHHHHhccCCh-----h
Confidence 344667899999999876532 33455678888888776643 23344444444433332110 00000000 0
Q ss_pred CCCCCCCchhhHhHHHHHHHHHcCCCC-hh---hHHHHHHHHhhhhcCCc--hhhhhHHHHHHHHHHhcCcchhhhhHHH
Q 039448 713 DSSNESSPDFMRARLFDLALSLLPGLN-AK---EIDVLFVAIKPALQDDE--GLIQKKAYKVLSTILRKCDGFLSSRLEE 786 (1276)
Q Consensus 713 ~~~~~~~~~~~~~~llDL~~alv~~l~-~~---~~~~Lf~~~~~~l~~~d--~~~QKKAYk~L~~i~~~~~~f~~~~~~e 786 (1276)
+. ..-+..+..++..+..++..++ .. .+..++..+...+++.. ..++..+.++|..++.....-+..+++.
T Consensus 573 d~---~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~ 649 (876)
T 1qgr_A 573 DR---IQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEA 649 (876)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHH
T ss_pred hH---HHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 00 0002235566777777887777 22 23445555555565543 3678899999999988544434566677
Q ss_pred HHHHHHhhCCCC-CccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHh
Q 039448 787 LLGLMIEVLPSC-HFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKE--ANKRTRNRAYDVLVQIGRAF 863 (1276)
Q Consensus 787 l~~~L~~~~~~~-~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke--~N~ktR~~A~~lLv~mg~~~ 863 (1276)
+...|...+... ...-|..=+.|+..++..+... ...+++.+++.++-..+. .+...|..+...+-.|+..+
T Consensus 650 ~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~-----~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~ 724 (876)
T 1qgr_A 650 FKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSN-----IIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAI 724 (876)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGG-----GHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHh
Confidence 777777666544 3445666666777776554321 245667777776666654 56789999999999999887
Q ss_pred ccCCCCCCcccHHHHHHHHhhhccCCC----h-------hHHHHHHHHHHHHHHHhhhhh-------H----HHHHhhhH
Q 039448 864 GDEENGGGKENLYQFFNMVAGGLAGES----P-------HMISAAVKGLARLAYEFSDLV-------S----NVYKLLPS 921 (1276)
Q Consensus 864 ~~~~~~~~~~~l~ef~~mV~aGLaG~t----p-------hMiSatI~ALsrLl~ef~d~i-------~----~~~~ll~~ 921 (1276)
... -..-+..++.++..++.... + ....+...+++.++..++..+ . .+..+++-
T Consensus 725 g~~----~~~~l~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 800 (876)
T 1qgr_A 725 GGE----FKKYLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSF 800 (876)
T ss_dssp GGG----GGGGHHHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHH
T ss_pred chh----HHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHHHHH
Confidence 542 12356677777777665432 1 566777788888887776421 1 23444443
Q ss_pred HHHHhccC--CHHHHHHHHHHHHHHHhhcChhHHHHH-HHHHHHHHhh
Q 039448 922 TFLLLQRK--NREIIKANLGLLKVLVAKSHAEGLQIH-LASMVEGLLK 966 (1276)
Q Consensus 922 v~llL~s~--~REIvKsaLgFvKV~v~~lp~~~l~~~-L~~lv~~Ll~ 966 (1276)
+..++.+. +.+|.+++++.+..++..++.+.+.++ .+.+++.|+.
T Consensus 801 l~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~i~~ll~ 848 (876)
T 1qgr_A 801 IDHIAGDEDHTDGVVACAAGLIGDLCTAFGKDVLKLVEARPMIHELLT 848 (876)
T ss_dssp HHHHHTCSCCCHHHHHHHHHHHHHHHHHHCTHHHHHHHTSHHHHHHHH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHHHhCcHHHHHHHhcHHHHHHHH
Confidence 33444565 778999999999999998887456666 2344444443
No 8
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=99.39 E-value=1.5e-08 Score=130.31 Aligned_cols=335 Identities=13% Similarity=0.137 Sum_probs=207.7
Q ss_pred HHHHhHHHHHHh-h----HhHHHHHHHhhcCCCccccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccc
Q 039448 629 VATDNLNVLKSS-A----RELLSILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKST 703 (1276)
Q Consensus 629 ~A~~nl~~L~~~-A----~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~ 703 (1276)
.|...+..|+.. . ..++|.|........+..|.....+++.++.-++. .+..++..++..|.....+
T Consensus 340 ~a~~~L~~la~~~~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~~l~~~l~~l~~~l~d------- 411 (852)
T 4fdd_A 340 CSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIPYLPELIPHLIQCLSD------- 411 (852)
T ss_dssp HHHHHHHHHHHHHGGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGGGHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHcCC-------
Confidence 344445555432 2 23555555555444444455455566666655543 4445666666666655411
Q ss_pred cCCCcccccCCCCCCCchhhHhHHHHHHHHHcCCC----ChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcch
Q 039448 704 RKSNSMQIDDSSNESSPDFMRARLFDLALSLLPGL----NAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGF 779 (1276)
Q Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv~~l----~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f 779 (1276)
+....|.+....+..+..++ ....+..++..+...+.+.++.+|..|...|..+|+.+..-
T Consensus 412 ---------------~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~ 476 (852)
T 4fdd_A 412 ---------------KKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTE 476 (852)
T ss_dssp ---------------SSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG
T ss_pred ---------------CCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh
Confidence 22345555555544444332 23445666666666777888999999999999999976665
Q ss_pred hhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHH---HHhhhhhHHHHHHHHHHH
Q 039448 780 LSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEII---LALKEANKRTRNRAYDVL 856 (1276)
Q Consensus 780 ~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiI---L~~Ke~N~ktR~~A~~lL 856 (1276)
+..++.+|...|...+..........-+.|+..++....+... ..+++..++|-++ -.+++.....| .+++.|
T Consensus 477 l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~---~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l 552 (852)
T 4fdd_A 477 LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN---KPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECL 552 (852)
T ss_dssp GGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGC---CHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhc---cHHHHHHHHHHHHHHHHhcccccHHHH-HHHHHH
Confidence 7778888888888776544333333346777777655432211 1346666666544 33455444445 789999
Q ss_pred HHHHHHhccCCCCCCcccHHHHHHHHhh----h-----------------ccCCChhHHHHHHHHHHHHHHHhhhhhHH-
Q 039448 857 VQIGRAFGDEENGGGKENLYQFFNMVAG----G-----------------LAGESPHMISAAVKGLARLAYEFSDLVSN- 914 (1276)
Q Consensus 857 v~mg~~~~~~~~~~~~~~l~ef~~mV~a----G-----------------LaG~tphMiSatI~ALsrLl~ef~d~i~~- 914 (1276)
..|+..+... +..|+..|+. . +.......+.+++.+|+.++-.+++.+..
T Consensus 553 ~~i~~~~g~~--------~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~ 624 (852)
T 4fdd_A 553 SSVATALQSG--------FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQL 624 (852)
T ss_dssp HHHHHHHGGG--------GHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHHHHHHhHh--------HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHH
Confidence 9999887542 3333332221 1 11223567889999999999888765553
Q ss_pred H--HHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCH
Q 039448 915 V--YKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGL 992 (1276)
Q Consensus 915 ~--~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~ 992 (1276)
+ ..+++.++.++.+++.+|.+++...+.-++..++ +.+.+|++.+++.|..--....-..|...-..+..+++.+|.
T Consensus 625 ~~~~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~ 703 (852)
T 4fdd_A 625 VARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGI 703 (852)
T ss_dssp HHTCCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGG
T ss_pred hcCCcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhH
Confidence 2 3677777888999999999999999999998888 567888888888776654332223333444456677777775
Q ss_pred HHHHhcCC
Q 039448 993 DAVKAVMP 1000 (1276)
Q Consensus 993 e~V~~~~P 1000 (1276)
+ +..+++
T Consensus 704 ~-~~p~~~ 710 (852)
T 4fdd_A 704 E-MQPYIP 710 (852)
T ss_dssp G-GGGGTH
T ss_pred h-HHHHHH
Confidence 3 555553
No 9
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.16 E-value=8.8e-08 Score=116.26 Aligned_cols=231 Identities=15% Similarity=0.143 Sum_probs=159.9
Q ss_pred HHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHH---HHHHhccC
Q 039448 743 IDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLY---FIIAHVSK 819 (1276)
Q Consensus 743 ~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~---~lv~~l~~ 819 (1276)
+..++..+...+++.+..+.+.+...|..+++....- .....+...+...+... ...-|..++. .++..+.
T Consensus 322 ~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~l~p~l~~~l~d~---~~~Vr~~a~~~l~~l~~~~~- 395 (588)
T 1b3u_A 322 MSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD--NTIEHLLPLFLAQLKDE---CPEVRLNIISNLDCVNEVIG- 395 (588)
T ss_dssp HHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH--HHHHHTHHHHHHHHTCS---CHHHHHHHHTTCHHHHHHSC-
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh--HHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHHHhcC-
Confidence 3444555556677888888888888888887632211 01233444444444322 2344555543 3332211
Q ss_pred CChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHH
Q 039448 820 DDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVK 899 (1276)
Q Consensus 820 ~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ 899 (1276)
...+.+.++|.++-..++.|-+.|..+++.|..+++.+... .....++..+...|....+....+++.
T Consensus 396 ------~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~Vr~~a~~ 463 (588)
T 1b3u_A 396 ------IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE------FFDEKLNSLCMAWLVDHVYAIREAATS 463 (588)
T ss_dssp ------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGG------GCCHHHHHHHHHGGGCSSHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 12345677787777889999999999999999999987542 112355667777787777888999999
Q ss_pred HHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHHHHHHH
Q 039448 900 GLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKI 979 (1276)
Q Consensus 900 ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KV 979 (1276)
+|+.++..|+... ....+++.+.-++.+.+.++..+++..+..+...++.+ .+++.+++.|+..-.|.....|..+
T Consensus 464 ~l~~l~~~~~~~~-~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~l~d~~~~Vr~~a 539 (588)
T 1b3u_A 464 NLKKLVEKFGKEW-AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD---ITTKHMLPTVLRMAGDPVANVRFNV 539 (588)
T ss_dssp HHHHHHHHHCHHH-HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH---HHHHHTHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHHHHHhCchh-HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHhhCCCCCchHHHHH
Confidence 9999998876531 23466777667788899999888888887777766554 3677888888888777667788888
Q ss_pred HHHHHHHHHhcCHHHH
Q 039448 980 KLLLEMLVKKCGLDAV 995 (1276)
Q Consensus 980 r~IlerLIRKfG~e~V 995 (1276)
-..|.++++.+|.+.+
T Consensus 540 ~~~l~~l~~~~~~~~~ 555 (588)
T 1b3u_A 540 AKSLQKIGPILDNSTL 555 (588)
T ss_dssp HHHHHHHGGGSCHHHH
T ss_pred HHHHHHHHHHhchhhh
Confidence 8999999999997754
No 10
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=99.12 E-value=1.1e-07 Score=115.53 Aligned_cols=349 Identities=14% Similarity=0.106 Sum_probs=223.5
Q ss_pred HHHHHHHHHHhcc-CcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHHH
Q 039448 568 MDLAGVLCSALHE-ENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLS 646 (1276)
Q Consensus 568 ~~lA~~L~~~L~~-~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~ 646 (1276)
+.+-+.|..++.+ .++.|...+.+|-.+++.. . . ..+...++|
T Consensus 163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~------~--------------------~----------~~~~~~l~~ 206 (588)
T 1b3u_A 163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL------E--------------------L----------DNVKSEIIP 206 (588)
T ss_dssp HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS------C--------------------H----------HHHHHTHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh------c--------------------H----------HhHHHHHHH
Confidence 3455666666654 6889999999998886431 0 0 012356888
Q ss_pred HHHHhhcCCCccccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHhH
Q 039448 647 ILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRAR 726 (1276)
Q Consensus 647 vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (1276)
.|.+.........|.....++..++...+++.....+. ..+....++ +....|..
T Consensus 207 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~---~~l~~~~~d----------------------~~~~vR~~ 261 (588)
T 1b3u_A 207 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVM---PTLRQAAED----------------------KSWRVRYM 261 (588)
T ss_dssp HHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTH---HHHHHHHTC----------------------SSHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHH---HHHHHHccC----------------------CCHHHHHH
Confidence 88888766555556666677777777777764433332 222222200 22346777
Q ss_pred HHHHHHHHcCCCChhh-HHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhh--hhHHHHHHHHHhhCCCCCccch
Q 039448 727 LFDLALSLLPGLNAKE-IDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLS--SRLEELLGLMIEVLPSCHFSAK 803 (1276)
Q Consensus 727 llDL~~alv~~l~~~~-~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~--~~~~el~~~L~~~~~~~~~~ak 803 (1276)
....+..+....+.+. ...++..+...++++++.++.-|...|..+++....... .++..+...+...+.. +..
T Consensus 262 a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d---~~~ 338 (588)
T 1b3u_A 262 VADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD---ANQ 338 (588)
T ss_dssp HHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC---SCH
T ss_pred HHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcC---CCH
Confidence 7777777766555443 345566667778888999999999999999985443211 2344455555544332 334
Q ss_pred HHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHh
Q 039448 804 RHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVA 883 (1276)
Q Consensus 804 ~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~ 883 (1276)
+.|-.+...+- .+.+... ...+.+.++|-++-+++|.+...|..|+..|..++..+.. ......++..+.
T Consensus 339 ~vR~~a~~~l~-~l~~~~~---~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~------~~~~~~~lp~l~ 408 (588)
T 1b3u_A 339 HVKSALASVIM-GLSPILG---KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI------RQLSQSLLPAIV 408 (588)
T ss_dssp HHHHHHHTTGG-GGHHHHC---HHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHhh---HhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHH
Confidence 55555544332 1111000 1234566777777778999999999999999999886532 122344555555
Q ss_pred hhccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHH
Q 039448 884 GGLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEG 963 (1276)
Q Consensus 884 aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~ 963 (1276)
..+.........+++.+|..+.-.++... ....+++.+..+|.+.+.+|..+++..+..++..+..+. +++.+++.
T Consensus 409 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~---~~~~llp~ 484 (588)
T 1b3u_A 409 ELAEDAKWRVRLAIIEYMPLLAGQLGVEF-FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW---AHATIIPK 484 (588)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH---HHHHTHHH
T ss_pred HHhcCCCchHHHHHHHHHHHHHHHcCHHH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh---HHHHHHHH
Confidence 55556667788888889988887664421 123566666778999999999999999999888887653 45667777
Q ss_pred HhhcchhhHHHHHHHHHHHHHHHHHhcCHHH
Q 039448 964 LLKWQDDTKNQFKSKIKLLLEMLVKKCGLDA 994 (1276)
Q Consensus 964 Ll~ws~d~k~hfR~KVr~IlerLIRKfG~e~ 994 (1276)
|.....+.....|...=..+..+.+.+|.+.
T Consensus 485 l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~ 515 (588)
T 1b3u_A 485 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDI 515 (588)
T ss_dssp HHHTTTCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHHHHHhcCHHH
Confidence 6665555555677777778888888887654
No 11
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.95 E-value=0.0007 Score=87.96 Aligned_cols=286 Identities=9% Similarity=0.096 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHHH
Q 039448 567 FMDLAGVLCSALHEENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLS 646 (1276)
Q Consensus 567 F~~lA~~L~~~L~~~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~ 646 (1276)
++.+-+.|...|.+ |.++...|.+|..+++... +.|..|...++.
T Consensus 527 l~~vl~~l~~~l~~-~~V~~~A~~al~~l~~~~~----------------------------------~~l~p~~~~il~ 571 (963)
T 2x19_B 527 INSVLPLVLHALGN-PELSVSSVSTLKKICRECK----------------------------------YDLPPYAANIVA 571 (963)
T ss_dssp HTTTHHHHHHHTTC-GGGHHHHHHHHHHHHHHTG----------------------------------GGCTTTHHHHHH
T ss_pred HHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHH----------------------------------HHHHhhHHHHHH
Confidence 34433444455644 9999999999999986421 113345667888
Q ss_pred HHHHhhcCC--CccccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhH
Q 039448 647 ILSRIFLES--AKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMR 724 (1276)
Q Consensus 647 vLfNvy~~~--~~~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1276)
.|+++.... ....+..+.++|...+...+++....++..++.-+.+........+ .++ ......
T Consensus 572 ~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~--~~~------------~~~~~~ 637 (963)
T 2x19_B 572 VSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEI--PNP------------SNKLAI 637 (963)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSC--SCH------------HHHHHH
T ss_pred HHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCC--CCH------------HHHHHH
Confidence 888877642 3345566778999888877777788889888887776653321100 000 011233
Q ss_pred hHHHHHHHHHcCCCCh---------------------hhHHHHHHHHhhh----hc--CCchhhhhHHHHHHHHHHhcCc
Q 039448 725 ARLFDLALSLLPGLNA---------------------KEIDVLFVAIKPA----LQ--DDEGLIQKKAYKVLSTILRKCD 777 (1276)
Q Consensus 725 ~~llDL~~alv~~l~~---------------------~~~~~Lf~~~~~~----l~--~~d~~~QKKAYk~L~~i~~~~~ 777 (1276)
...+|.+.+++..+.. ..+..++..+.|. +. ..+..+...+++++.+++....
T Consensus 638 ~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~ 717 (963)
T 2x19_B 638 VHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLL 717 (963)
T ss_dssp HHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhc
Confidence 4566766555544321 1234445444443 22 2356778889999999887544
Q ss_pred chhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHh-----hhh--hHHHHH
Q 039448 778 GFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILAL-----KEA--NKRTRN 850 (1276)
Q Consensus 778 ~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~-----Ke~--N~ktR~ 850 (1276)
......+..+.+.++........ ..=+.++..++....... .....+..++..++-++ ++. ....|.
T Consensus 718 ~~~~~~l~~~~~~l~~~~~~~~~---~~~l~l~~~li~~f~~~~---~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~ 791 (963)
T 2x19_B 718 DDFAPMVPQLCEMLGRMYSTIPQ---ASALDLTRQLVHIFAHEP---AHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVD 791 (963)
T ss_dssp STTGGGHHHHHHHHHHHHHHSCC---HHHHHHHHHHHHHHTTCT---TTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHH
T ss_pred ccccccHHHHHHHHHHHHHcCCc---cHHHHHHHHHHHHhCCCc---chHHHHHHHHHHHHHHHHHHHhhCcccCchHHH
Confidence 33455566666666655443211 223445555554211111 01234444444333333 543 579999
Q ss_pred HHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHh
Q 039448 851 RAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEF 908 (1276)
Q Consensus 851 ~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef 908 (1276)
..|++|..|.+.+-..--. ++..+..++..+..||....+.+..++...+..++-.+
T Consensus 792 ~~f~ll~~~~~~~~~~~~~-~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~ 848 (963)
T 2x19_B 792 SFMQLLAQALKRKPDLFLC-ERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRC 848 (963)
T ss_dssp HHHHHHHHHHHHCGGGGGC-TTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHhCcHHHcC-CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcC
Confidence 9999999999876542111 22348889988889999888888889999999887443
No 12
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.66 E-value=0.0046 Score=80.54 Aligned_cols=340 Identities=14% Similarity=0.127 Sum_probs=186.8
Q ss_pred hhHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhH
Q 039448 565 ESFMDLAGVLCSALHEENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSAREL 644 (1276)
Q Consensus 565 ~sF~~lA~~L~~~L~~~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~ 644 (1276)
+.+..+-+.|-..| + |.++...|.||+.|++.. -..|..|...+
T Consensus 542 ~~l~~vl~~l~~~l-~-~~v~~~A~~al~~l~~~~----------------------------------~~~l~p~~~~l 585 (971)
T 2x1g_F 542 AYIPPAINLLVRGL-N-SSMSAQATLGLKELCRDC----------------------------------QLQLKPYADPL 585 (971)
T ss_dssp -CHHHHHHHHHHHH-H-SSCHHHHHHHHHHHHHHC----------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-C-hHHHHHHHHHHHHHHHHH----------------------------------HHhccccHHHH
Confidence 34444444444555 4 899999999999998542 13467788899
Q ss_pred HHHHHHhhcCC--CccccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchh
Q 039448 645 LSILSRIFLES--AKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDF 722 (1276)
Q Consensus 645 L~vLfNvy~~~--~~~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1276)
+..|++++... +.+.+..+.++|...++..+++....+|...+.-+.+........+.. +. ....
T Consensus 586 l~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~-~~------------~~~~ 652 (971)
T 2x1g_F 586 LNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSK-TP------------AARI 652 (971)
T ss_dssp HHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC----CH------------HHHH
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC-Ch------------hhHH
Confidence 99999998763 334556677888888876666777788887766666555321110000 00 0112
Q ss_pred hHhHHHHHHHHHcCCCCh------------hh----HHHHHHHHhhhhcC--CchhhhhHHHHHHHHHHhcCcchhhhhH
Q 039448 723 MRARLFDLALSLLPGLNA------------KE----IDVLFVAIKPALQD--DEGLIQKKAYKVLSTILRKCDGFLSSRL 784 (1276)
Q Consensus 723 ~~~~llDL~~alv~~l~~------------~~----~~~Lf~~~~~~l~~--~d~~~QKKAYk~L~~i~~~~~~f~~~~~ 784 (1276)
.....++.+..++..+.. +. +..++.++...+.. .+..+..++++++..++..-..-+...+
T Consensus 653 ~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l 732 (971)
T 2x1g_F 653 RTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPML 732 (971)
T ss_dssp HHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHH
T ss_pred HHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccH
Confidence 334455555555433221 11 22233333333322 3568889999999998874333345568
Q ss_pred HHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHh-----------hhhhHHHHHHHH
Q 039448 785 EELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILAL-----------KEANKRTRNRAY 853 (1276)
Q Consensus 785 ~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~-----------Ke~N~ktR~~A~ 853 (1276)
..+.+.|+....+... ..=|.++..++..+-.+. +....+..++..++-.+ -+.+...|+..|
T Consensus 733 ~~~~~~l~~~~~~~~~---~~~l~l~~~~i~~~~~~~---~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f 806 (971)
T 2x1g_F 733 QDLCLFIVASFQTRCC---APTLEISKTAIVMFFKDE---GCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFF 806 (971)
T ss_dssp HHHHHHHHHHCC--CC---HHHHHHHHHHHTTCCC--------HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCc---hHHHHHHHHHHHHhCCCc---chHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHH
Confidence 8888888888775432 123444455544332211 11223333333322221 223678999999
Q ss_pred HHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHh--hhhhHH-----HHHhhhHHHH-H
Q 039448 854 DVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEF--SDLVSN-----VYKLLPSTFL-L 925 (1276)
Q Consensus 854 ~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef--~d~i~~-----~~~ll~~v~l-l 925 (1276)
.++..|.+.+-..--. ++..+..+|.....+|....+....++..-++.++-.- .+.+.. ...++..++. +
T Consensus 807 ~ll~~~l~~~p~~~~~-s~~~l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~ 885 (971)
T 2x1g_F 807 GCLTQIIKKIPQVLED-KTLAYDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCV 885 (971)
T ss_dssp HHHHHHHHSSGGGGGC-TTSCHHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHcC-CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHh
Confidence 9999998855432111 12238888888888888766666666777777754331 111221 1233333322 2
Q ss_pred hccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHH
Q 039448 926 LQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMV 961 (1276)
Q Consensus 926 L~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv 961 (1276)
...-.|..+..+-+.++.++...|. .+.++|+..+
T Consensus 886 ~~~~~~s~~~~~a~~l~~l~~~~~~-~~~~~l~~~l 920 (971)
T 2x1g_F 886 GYLTPRSQVDKFADILLAMNRKYAA-EMAVWMKSLM 920 (971)
T ss_dssp HTTSCGGGGGGGHHHHHHHHHHHHH-HHHHHHHHHH
T ss_pred cccCChhHHHHHHHHHHHHHHHCcH-HHHHHHHHHh
Confidence 2234455554444455555555553 3455555443
No 13
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=98.44 E-value=0.0058 Score=80.02 Aligned_cols=232 Identities=12% Similarity=0.163 Sum_probs=139.6
Q ss_pred chhhHhHHHHHHHHHcCCCC--hhhHHHHHHHHhh--hhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhC
Q 039448 720 PDFMRARLFDLALSLLPGLN--AKEIDVLFVAIKP--ALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVL 795 (1276)
Q Consensus 720 ~~~~~~~llDL~~alv~~l~--~~~~~~Lf~~~~~--~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~ 795 (1276)
.+..+.+.++++.-+..++. .+.+..+..++.. -+.+++..+|-+|...+.++|+.|...+..+++.|.+.+...+
T Consensus 508 hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL 587 (980)
T 3ibv_A 508 HPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLL 587 (980)
T ss_dssp CHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGG
T ss_pred CHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhh
Confidence 45688899999999888864 3567777777766 6677788999999999999999998888888888888777655
Q ss_pred CCCCcc---------------------chHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHH
Q 039448 796 PSCHFS---------------------AKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYD 854 (1276)
Q Consensus 796 ~~~~~~---------------------ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~ 854 (1276)
.....+ ++-+=+.++-.|+..... +.+ +....+..+++-.+
T Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~-~~e-~~~~~l~~ll~pl~---------------- 649 (980)
T 3ibv_A 588 NISVSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNL-TPE-EQALYCDSLINALI---------------- 649 (980)
T ss_dssp CCCCCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCC-CHH-HHHHHHHHHHHHHH----------------
T ss_pred cCcCCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCC-CHH-HHHHHHHHHHHHHH----------------
Confidence 521111 112223344444433221 111 22333333332211
Q ss_pred HHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhh-------hHHHHHhhhHHHHHhc
Q 039448 855 VLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDL-------VSNVYKLLPSTFLLLQ 927 (1276)
Q Consensus 855 lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~-------i~~~~~ll~~v~llL~ 927 (1276)
..+....... +..++.+ + -+...|+|++++.--|++. +....+.++.+...|.
T Consensus 650 --~~l~~~l~~~--~~~~~~~-----------~-----~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~ 709 (980)
T 3ibv_A 650 --GKANAALSSD--LSALENI-----------I-----SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILD 709 (980)
T ss_dssp --HHHHHHHTTS--CC--CHH-----------H-----HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHhhc--ccCccHH-----------H-----HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHH
Confidence 1111111111 0000100 0 1223355566665555442 2223355555555555
Q ss_pred --cCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCHH
Q 039448 928 --RKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLD 993 (1276)
Q Consensus 928 --s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~e 993 (1276)
.++..|..++-.+++-.|.++..+ +.|+||.+++.|+.-- + ...+- -.=.++..+|.+||-|
T Consensus 710 ~~~~~~~irea~~~~~~r~i~~lg~~-~~p~lp~~i~~ll~~~-~-~~e~~-~fL~l~~qli~~f~~~ 773 (980)
T 3ibv_A 710 RMGFNEDIRGAVRFTSGRIINVVGPD-MLPKVPQLISILLNSI-D-MNELV-DVLSFISQLIHIYKDN 773 (980)
T ss_dssp HSCCSHHHHHHHHHHHHHHTTTTHHH-HTTTHHHHHHHHHHHC-C-TTTHH-HHHHHHHHHHHHTTTT
T ss_pred hcCCcHHHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHHHhcC-C-HHHHH-HHHHHHHHHHHHHHHH
Confidence 467888889999999999999766 7899999999998320 1 11122 2337888999999988
No 14
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.37 E-value=9.1e-06 Score=88.53 Aligned_cols=195 Identities=14% Similarity=0.166 Sum_probs=155.8
Q ss_pred hhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCC-CCCccchHHHHHHHHHHHHhccCCChHHHHhhhH
Q 039448 752 PALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLP-SCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYIL 830 (1276)
Q Consensus 752 ~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~-~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i 830 (1276)
..+.+++-...+.|...|..+++.+.++...++.++...|...+. ......+..=+.||..+...+.+. ...++
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~-----~~~~~ 96 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKR-----FSNYA 96 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGG-----GHHHH
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhh-----HHHHH
Confidence 345677888889999999999997666655566777777777663 455666777788888888665442 24689
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhh
Q 039448 831 SSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSD 910 (1276)
Q Consensus 831 ~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d 910 (1276)
..++|-++-+++|.+..+|++|...|..+...+
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~----------------------------------------------- 129 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYAST----------------------------------------------- 129 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-----------------------------------------------
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-----------------------------------------------
Confidence 999999999999999999999999999885510
Q ss_pred hhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcC-hhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHh
Q 039448 911 LVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSH-AEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKK 989 (1276)
Q Consensus 911 ~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp-~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRK 989 (1276)
.+..+++.++..|.++|..|-..+++|+-.++.... .....+|++.+++.|...-+|.+...|......+..+.+-
T Consensus 130 ---~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 130 ---SLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp ---CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 012345555667888899888889999999888874 4467889999999999998888899999999999999999
Q ss_pred cCHHHHHhcCCH
Q 039448 990 CGLDAVKAVMPE 1001 (1276)
Q Consensus 990 fG~e~V~~~~Pe 1001 (1276)
+|.+.+..++|.
T Consensus 207 vg~~~~~~~l~~ 218 (242)
T 2qk2_A 207 MGDKAVTPLLAD 218 (242)
T ss_dssp HCHHHHGGGGTT
T ss_pred cCHHHHHHHHHh
Confidence 999999998875
No 15
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.34 E-value=8.9e-06 Score=95.47 Aligned_cols=294 Identities=12% Similarity=0.105 Sum_probs=188.3
Q ss_pred HhHHHHHHHhhcCC--CccccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCC
Q 039448 642 RELLSILSRIFLES--AKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESS 719 (1276)
Q Consensus 642 ~n~L~vLfNvy~~~--~~~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1276)
.+++|.|++..... .+..+.....+++..+.-..++.+..++..++..+....... .+
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~--------------------~~ 186 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKE--------------------EP 186 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTT--------------------CC
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCC--------------------CC
Confidence 36788888777654 344444444555554443323334444555555555554110 01
Q ss_pred chhhHhHHHHHHHHHcCCCChhh----H-HHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHH-HHHHHHHh
Q 039448 720 PDFMRARLFDLALSLLPGLNAKE----I-DVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLE-ELLGLMIE 793 (1276)
Q Consensus 720 ~~~~~~~llDL~~alv~~l~~~~----~-~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~-el~~~L~~ 793 (1276)
....|...+..+..+++++.... . ..+...+...+.+.+..+++-++++|..+++.+..++..++. .+...++.
T Consensus 187 ~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~ 266 (462)
T 1ibr_B 187 SNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIE 266 (462)
T ss_dssp CHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567777777777777764321 1 223344444566778899999999999999987777777777 78887776
Q ss_pred hCCCCCccchHHHHHHHHH---HHHhcc-----------------CCChHHHHhhhHHHHHHHHHHHhhh-------hhH
Q 039448 794 VLPSCHFSAKRHRLDCLYF---IIAHVS-----------------KDDSEQRRSYILSSFLTEIILALKE-------ANK 846 (1276)
Q Consensus 794 ~~~~~~~~ak~~RL~cL~~---lv~~l~-----------------~~~~~~~~~~~i~~~lpEiIL~~Ke-------~N~ 846 (1276)
...... ..-|..++.. +..... ..... -...+++.++|-++-+..+ .+-
T Consensus 267 ~~~~~~---~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~p~l~~~l~~~d~d~~~~~~ 342 (462)
T 1ibr_B 267 AMKSDI---DEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKF-YAKGALQYLVPILTQTLTKQDENDDDDDW 342 (462)
T ss_dssp HHHCSS---HHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCC-HHHHHHHHHHHHHHHHTTCCCSSCCTTCC
T ss_pred HHcCCc---hHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHH-HHHHHhhhccHHHHHHHHhcccccccccc
Confidence 654332 3345555543 332210 00000 0112345566644333432 234
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhh-hhh-HHHHHhhhHHHH
Q 039448 847 RTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFS-DLV-SNVYKLLPSTFL 924 (1276)
Q Consensus 847 ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~-d~i-~~~~~ll~~v~l 924 (1276)
..|..|.++|..++..+.+ ..+..++..+..+|....+...-+++.+|+.+..... +.+ ..+.++++.+.-
T Consensus 343 ~~r~~a~~~L~~l~~~~~~-------~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~ 415 (462)
T 1ibr_B 343 NPCKAAGVCLMLLATCCED-------DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE 415 (462)
T ss_dssp SHHHHHHHHHHHHHHHTTT-------THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence 6899999999999998742 4567778888888988889999999999999986443 222 235678888889
Q ss_pred HhccCCHHHHHHHHHHHHHHHhhcChhH-HHHHHHHHHHHHhh
Q 039448 925 LLQRKNREIIKANLGLLKVLVAKSHAEG-LQIHLASMVEGLLK 966 (1276)
Q Consensus 925 lL~s~~REIvKsaLgFvKV~v~~lp~~~-l~~~L~~lv~~Ll~ 966 (1276)
+|.+.+.+|..+|...+--++..++... ..+|++.++++|+.
T Consensus 416 ~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~l~~ll~~Ll~ 458 (462)
T 1ibr_B 416 LMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 458 (462)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHHHC
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 9999999999998888888887777654 35788888888875
No 16
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=98.20 E-value=0.051 Score=70.66 Aligned_cols=234 Identities=12% Similarity=0.055 Sum_probs=136.7
Q ss_pred hhhHhHHHHHHHHHcCCCC--hhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCC-
Q 039448 721 DFMRARLFDLALSLLPGLN--AKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPS- 797 (1276)
Q Consensus 721 ~~~~~~llDL~~alv~~l~--~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~- 797 (1276)
+..+.+.+..+..+..++. .+.+..++..+...+ + +.+|..|-..|..+|+.+...+..+++.|.+.+...+..
T Consensus 520 ~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~ 596 (971)
T 2x1g_F 520 VKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTG 596 (971)
T ss_dssp HHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCC
Confidence 4678888888888877655 345777777666666 2 789999999999999988888889999999888877664
Q ss_pred -CCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHh----hhh--hHHHHHHHHHHHHHHHHHhccCCC--
Q 039448 798 -CHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILAL----KEA--NKRTRNRAYDVLVQIGRAFGDEEN-- 868 (1276)
Q Consensus 798 -~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~----Ke~--N~ktR~~A~~lLv~mg~~~~~~~~-- 868 (1276)
.....+-.=+.||-.++..++.. +...++..+++-++-.. +.. ++..+....+.|..++..+..-..
T Consensus 597 ~~~~~~~~~~~~ai~~i~~~~~~~----~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~ 672 (971)
T 2x1g_F 597 RMKNSDSVRLMFSIGKLMSLLRPE----EIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDV 672 (971)
T ss_dssp TSCHHHHHHHHHHHHHHHHTSCTT----HHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCChHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCc
Confidence 22333333355555555444411 23445555544444322 222 444566667777666654432111
Q ss_pred -CCC-----cccHHHHH----HHHhhhc--cCCChhHHHHHHHHHHHHHHHhhhhhH-HHHHhhhHHHHHhccCCHHHHH
Q 039448 869 -GGG-----KENLYQFF----NMVAGGL--AGESPHMISAAVKGLARLAYEFSDLVS-NVYKLLPSTFLLLQRKNREIIK 935 (1276)
Q Consensus 869 -~~~-----~~~l~ef~----~mV~aGL--aG~tphMiSatI~ALsrLl~ef~d~i~-~~~~ll~~v~llL~s~~REIvK 935 (1276)
++. ...+..|+ .++...+ -+.++..+.++..++++++.-|+..+. .+..+++.+..-+++ .++ -
T Consensus 673 ~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~-~~~--~ 749 (971)
T 2x1g_F 673 DEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQT-RCC--A 749 (971)
T ss_dssp -----------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC---CC--H
T ss_pred CcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhc-CCc--h
Confidence 000 11222222 2222222 123467888888899999888866544 355555555444443 233 3
Q ss_pred HHHHHHHHHHhhcChh-HHHHHHHHHHHHH
Q 039448 936 ANLGLLKVLVAKSHAE-GLQIHLASMVEGL 964 (1276)
Q Consensus 936 saLgFvKV~v~~lp~~-~l~~~L~~lv~~L 964 (1276)
.+|+++..+|..+..+ ...+.+..++..+
T Consensus 750 ~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~ 779 (971)
T 2x1g_F 750 PTLEISKTAIVMFFKDEGCKPLMQQLLREF 779 (971)
T ss_dssp HHHHHHHHHHTTCCC-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 5999999999999763 3444444444443
No 17
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.17 E-value=0.00011 Score=86.08 Aligned_cols=264 Identities=11% Similarity=0.058 Sum_probs=174.3
Q ss_pred hhHhHHHHHHHHHcCC----CChhhHHHHHHHHhhhhcCC--chhhhhHHHHHHHHHHhcCcchhhh--hHHHHHHHHHh
Q 039448 722 FMRARLFDLALSLLPG----LNAKEIDVLFVAIKPALQDD--EGLIQKKAYKVLSTILRKCDGFLSS--RLEELLGLMIE 793 (1276)
Q Consensus 722 ~~~~~llDL~~alv~~----l~~~~~~~Lf~~~~~~l~~~--d~~~QKKAYk~L~~i~~~~~~f~~~--~~~el~~~L~~ 793 (1276)
..+...+..+..++.. .-...+..++..+...+.+. +..+++.|-+.|..+++....-... ....+...+.+
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~ 224 (462)
T 1ibr_B 145 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCE 224 (462)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 4566666666665532 23445667778788888877 6889999999999877521111110 11224555555
Q ss_pred hCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc------cC
Q 039448 794 VLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILS-SFLTEIILALKEANKRTRNRAYDVLVQIGRAFG------DE 866 (1276)
Q Consensus 794 ~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~-~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~------~~ 866 (1276)
.+.......|+.=+.||..++...++. ...+++ .+++=++-++++.+...|..|++.+..++.... +.
T Consensus 225 ~~~~~~~~vr~~~~~~l~~l~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~ 299 (462)
T 1ibr_B 225 ATQCPDTRVRVAALQNLVKIMSLYYQY-----METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASE 299 (462)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHCGGG-----CTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 554444445556666777666553322 124455 666666667799999999999999999987531 10
Q ss_pred CCC-------CCcc----cHHHHHHHHhhhccC-------CChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhcc
Q 039448 867 ENG-------GGKE----NLYQFFNMVAGGLAG-------ESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQR 928 (1276)
Q Consensus 867 ~~~-------~~~~----~l~ef~~mV~aGLaG-------~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s 928 (1276)
..+ .... .+..++..++..|.- .......++..+|..|.-.+++ ..+..+++.+..+|++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~--~~~~~~~~~l~~~l~~ 377 (462)
T 1ibr_B 300 AAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVPHVLPFIKEHIKN 377 (462)
T ss_dssp TTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THHHHHHHHHHHHTTC
T ss_pred ccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH--HHHHHHHHHHHHHhcC
Confidence 000 0111 134444445444542 2345677888999999888874 2344566777778899
Q ss_pred CCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCH
Q 039448 929 KNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGL 992 (1276)
Q Consensus 929 ~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~ 992 (1276)
.+-.+..+++-.+-.+....+.+.+.++++.+++.|+..-.|...+.|...-..|.+++..+|.
T Consensus 378 ~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~ 441 (462)
T 1ibr_B 378 PDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 441 (462)
T ss_dssp SSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred CChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence 9999999999888887776665677788888988888876666677788888889999988865
No 18
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=98.12 E-value=0.068 Score=69.26 Aligned_cols=318 Identities=13% Similarity=0.088 Sum_probs=168.1
Q ss_pred hHhHHHHHHHhhcCCCccccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCc
Q 039448 641 ARELLSILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSP 720 (1276)
Q Consensus 641 A~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1276)
-..+|+.||+-... +..+.....++..++.-+.. .+..++..+++.|........ ..
T Consensus 527 l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~-~l~p~~~~il~~l~~~l~~~~--------------------~~ 583 (963)
T 2x19_B 527 INSVLPLVLHALGN--PELSVSSVSTLKKICRECKY-DLPPYAANIVAVSQDVLMKQI--------------------HK 583 (963)
T ss_dssp HTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGG-GCTTTHHHHHHHHHHHHHTTC--------------------SC
T ss_pred HHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHhccCC--------------------CC
Confidence 44666677766533 33333333445544443332 345667777777766652200 12
Q ss_pred hhhHhHHHHHHHHHcCCCChhhHHHHHHHHhhhh----c----C-CchhhhhHHHHHHHHHH---hcCcc----------
Q 039448 721 DFMRARLFDLALSLLPGLNAKEIDVLFVAIKPAL----Q----D-DEGLIQKKAYKVLSTIL---RKCDG---------- 778 (1276)
Q Consensus 721 ~~~~~~llDL~~alv~~l~~~~~~~Lf~~~~~~l----~----~-~d~~~QKKAYk~L~~i~---~~~~~---------- 778 (1276)
...+..+++-+..++-.++.+....++..+.+.+ + . .++...+.....|+.|+ ..-..
T Consensus 584 ~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~ 663 (963)
T 2x19_B 584 TSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGP 663 (963)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC------
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCccccccccc
Confidence 2456778888888877776455555555433222 1 1 12333344444555443 21110
Q ss_pred ------------hhhhhHHHHHHHHHhhCCCC--CccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhh
Q 039448 779 ------------FLSSRLEELLGLMIEVLPSC--HFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEA 844 (1276)
Q Consensus 779 ------------f~~~~~~el~~~L~~~~~~~--~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~ 844 (1276)
-+....+.++..+...+..- .+.-...=++++..++..+.... ..|++.+++-++-..+..
T Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~-----~~~l~~~~~~l~~~~~~~ 738 (963)
T 2x19_B 664 ELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDF-----APMVPQLCEMLGRMYSTI 738 (963)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTT-----GGGHHHHHHHHHHHHHHS
T ss_pred ccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccc-----cccHHHHHHHHHHHHHcC
Confidence 02223344444444333221 12233333456666665544332 467888777666655432
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHh----hhcc---CCChhHHHHHHHHHHHHHHHhhhhh---HH
Q 039448 845 NKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVA----GGLA---GESPHMISAAVKGLARLAYEFSDLV---SN 914 (1276)
Q Consensus 845 N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~----aGLa---G~tphMiSatI~ALsrLl~ef~d~i---~~ 914 (1276)
+. .....++-.+.+.+... +.-...+.+++..+. ..+. .+.|.++-+.+.-|.+++-.+...+ +.
T Consensus 739 ~~---~~~l~l~~~li~~f~~~--~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~ 813 (963)
T 2x19_B 739 PQ---ASALDLTRQLVHIFAHE--PAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERL 813 (963)
T ss_dssp CC---HHHHHHHHHHHHHHTTC--TTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTS
T ss_pred Cc---cHHHHHHHHHHHHhCCC--cchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCcc
Confidence 21 23455666666544321 111233444443332 2222 2348888888888998886664433 22
Q ss_pred -HHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcC-----hhHHHHHHHHHHHHHhhc--chhhHHHHHHHHHHHHHHH
Q 039448 915 -VYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSH-----AEGLQIHLASMVEGLLKW--QDDTKNQFKSKIKLLLEML 986 (1276)
Q Consensus 915 -~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp-----~~~l~~~L~~lv~~Ll~w--s~d~k~hfR~KVr~IlerL 986 (1276)
...+++.+...|+..+|+++++++.|+.-++.... ...+.++.+.++..++.- ...++..+. .+-.||-.|
T Consensus 814 ~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~~~~il~~l 892 (963)
T 2x19_B 814 DVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMD-CFADILFAL 892 (963)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHH-HHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHH-HHHHHHHHH
Confidence 56778888888999999999999999998876543 122334445544444222 234666775 344455567
Q ss_pred HHhcCH
Q 039448 987 VKKCGL 992 (1276)
Q Consensus 987 IRKfG~ 992 (1276)
+.++|-
T Consensus 893 ~~~~~~ 898 (963)
T 2x19_B 893 NKHCFS 898 (963)
T ss_dssp HHHSHH
T ss_pred HHHChH
Confidence 777774
No 19
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=98.12 E-value=0.045 Score=71.38 Aligned_cols=271 Identities=15% Similarity=0.186 Sum_probs=160.9
Q ss_pred chhhHhHHHHHHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcC-----------cchhhhhHHHHH
Q 039448 720 PDFMRARLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKC-----------DGFLSSRLEELL 788 (1276)
Q Consensus 720 ~~~~~~~llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~-----------~~f~~~~~~el~ 788 (1276)
.+..|.+.+..+..+...++.+.+..++..+...+.+++..+|-.|...|..+|+.. ...+..++..|.
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~~~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll 550 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLTKAQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILL 550 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHH
T ss_pred CceehHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHH
Confidence 456788888999888888888888888888878888888999999999999999842 234778888888
Q ss_pred HHHHhhCCCCC-----ccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHH
Q 039448 789 GLMIEVLPSCH-----FSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKE-----ANKRTRNRAYDVLVQ 858 (1276)
Q Consensus 789 ~~L~~~~~~~~-----~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke-----~N~ktR~~A~~lLv~ 858 (1276)
+.|...+.... ......=+.||..++..+.... ..++..+++.++-.... .|..-+..++++|-.
T Consensus 551 ~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~-----~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~ 625 (960)
T 1wa5_C 551 KNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSI-----QPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGA 625 (960)
T ss_dssp HHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTT-----GGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 88887766542 1123455778888876654332 34444444444333322 255566667777777
Q ss_pred HHHHhccCC----------------CCCCcccHHHHHHHHhhhc---cCCChhHHH--------------HHHHHHHHHH
Q 039448 859 IGRAFGDEE----------------NGGGKENLYQFFNMVAGGL---AGESPHMIS--------------AAVKGLARLA 905 (1276)
Q Consensus 859 mg~~~~~~~----------------~~~~~~~l~ef~~mV~aGL---aG~tphMiS--------------atI~ALsrLl 905 (1276)
+++....+. ..+..+-+++.+.++..-+ .+-+|.|.+ +.+.++.+++
T Consensus 626 l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L 705 (960)
T 1wa5_C 626 ILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIKPLAQPLLAPNVWELKGNIPAVTRLL 705 (960)
T ss_dssp HHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTGGGHHHHTSGGGGCCTTTHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCCCHHHHHHHHHHcCHHHhcCCCCchhHHHHH
Confidence 766511000 0001122222222221110 111222221 1333555555
Q ss_pred HHh----hhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhcchh-hHHHHHHHHH
Q 039448 906 YEF----SDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKWQDD-TKNQFKSKIK 980 (1276)
Q Consensus 906 ~ef----~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d-~k~hfR~KVr 980 (1276)
-.| .+.+..+..++.....++.+++.+ .++..++-.++..+|.+.+.+|++.+++.++.--.. ....|+...=
T Consensus 706 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~a~~ll~~i~~~~~~~~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l 783 (960)
T 1wa5_C 706 KSFIKTDSSIFPDLVPVLGIFQRLIASKAYE--VHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQRLQNSKTERYVKKLT 783 (960)
T ss_dssp HHHHHHHGGGCSCSHHHHHHHHHHHTCTTTH--HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHGGGSSCCHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHhCCCccc--chHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHH
Confidence 555 111100122333333456677655 678888888899999888999999999998776432 2345554444
Q ss_pred HHHHHHHHhcCHHHHHh
Q 039448 981 LLLEMLVKKCGLDAVKA 997 (1276)
Q Consensus 981 ~IlerLIRKfG~e~V~~ 997 (1276)
+.+-.++-++|.+.+-.
T Consensus 784 ~~~~~~~~~~~~~~~~~ 800 (960)
T 1wa5_C 784 VFFGLISNKLGSDFLIH 800 (960)
T ss_dssp HHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHcCHHHHHH
Confidence 45555556777765543
No 20
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.11 E-value=6.2e-05 Score=83.17 Aligned_cols=200 Identities=11% Similarity=0.119 Sum_probs=160.7
Q ss_pred hhhcCCchhhhhHHHHHHHH-HHhcCcchh--hhhHHHHHHHHHhhC-CCCCccchHHHHHHHHHHHHhcc-CCChHHHH
Q 039448 752 PALQDDEGLIQKKAYKVLST-ILRKCDGFL--SSRLEELLGLMIEVL-PSCHFSAKRHRLDCLYFIIAHVS-KDDSEQRR 826 (1276)
Q Consensus 752 ~~l~~~d~~~QKKAYk~L~~-i~~~~~~f~--~~~~~el~~~L~~~~-~~~~~~ak~~RL~cL~~lv~~l~-~~~~~~~~ 826 (1276)
+.+.+++-..-|-|+.-|.. +++.|.... ..++.++...|...+ .......+..=+.||..+...+. +..
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f----- 97 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGF----- 97 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTS-----
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccc-----
Confidence 45677788888999999999 998776665 455567777777666 34455556677888888887765 433
Q ss_pred h-hhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCc-ccHHHHHHHHhhhccCCChhHHHHHHHHHHHH
Q 039448 827 S-YILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGK-ENLYQFFNMVAGGLAGESPHMISAAVKGLARL 904 (1276)
Q Consensus 827 ~-~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~-~~l~ef~~mV~aGLaG~tphMiSatI~ALsrL 904 (1276)
. .+...++|-++=.+||.+...|+.|...|..+...+.. ... ..++..+.-+..+|....|+...+++..|+++
T Consensus 98 ~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~----~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~ 173 (249)
T 2qk1_A 98 SKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP----LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNAS 173 (249)
T ss_dssp CHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT----TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc----cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 4 68899999999999999999999999999999997632 111 22778888888899888899999999999999
Q ss_pred HHHhhh---hh-HHH-HHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHH
Q 039448 905 AYEFSD---LV-SNV-YKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASM 960 (1276)
Q Consensus 905 l~ef~d---~i-~~~-~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~l 960 (1276)
+..++. .+ ..+ .++++.+.-+|...+.+|..++...+=.+...+..+.+.+|++.+
T Consensus 174 ~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 174 MKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHL 234 (249)
T ss_dssp HHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHS
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 999873 33 356 788898899999999999999998888888888888999999876
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.95 E-value=0.00074 Score=81.76 Aligned_cols=316 Identities=9% Similarity=0.077 Sum_probs=175.1
Q ss_pred HHHHHHHHHhcc--CcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHHH
Q 039448 569 DLAGVLCSALHE--ENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLS 646 (1276)
Q Consensus 569 ~lA~~L~~~L~~--~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~ 646 (1276)
++-+.|..+|.+ ++++|...+.+|..+...+.. +...+ ...+.+|
T Consensus 130 g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~-------------------------------~~~~~--~~~g~i~ 176 (530)
T 1wa5_B 130 GVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA-------------------------------QTKVV--VDADAVP 176 (530)
T ss_dssp TCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH-------------------------------HHHHH--HHTTCHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH-------------------------------HHHHH--HHCCCHH
Confidence 355667777765 578999999988887532100 01111 1246677
Q ss_pred HHHHhhcCCCccccccHHHHHHHhhccCCHHHHHHHH-HHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHh
Q 039448 647 ILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTRLF-KRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRA 725 (1276)
Q Consensus 647 vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~~l~~~f-~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1276)
.|+.+.....++.+.....++..++.-. ++....++ ..++..|...... .....+.
T Consensus 177 ~Lv~lL~~~~~~vr~~A~~aL~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~----------------------~~~~v~~ 233 (530)
T 1wa5_B 177 LFIQLLYTGSVEVKEQAIWALGNVAGDS-TDYRDYVLQCNAMEPILGLFNS----------------------NKPSLIR 233 (530)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHGGGS----------------------CCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCC-ccchHHHHHcCcHHHHHHHhcc----------------------CCHHHHH
Confidence 8887776543333333333333333211 22211111 1234444433310 1123344
Q ss_pred HHHHHHHHHcCC----CChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHH-HHHHHHHhhCCCCCc
Q 039448 726 RLFDLALSLLPG----LNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLE-ELLGLMIEVLPSCHF 800 (1276)
Q Consensus 726 ~llDL~~alv~~----l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~-el~~~L~~~~~~~~~ 800 (1276)
..+-.+..|+.+ ........++..+...+.+.+..++..|..+|..++..........++ .+...|+..+...
T Consensus 234 ~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-- 311 (530)
T 1wa5_B 234 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-- 311 (530)
T ss_dssp HHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS--
T ss_pred HHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC--
Confidence 445555555533 333333334445556677888999999999999999754332222111 2344555554432
Q ss_pred cchHHHHHHHHHHHHhccCCChHHHHhhhH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC-CCCcccHHHH
Q 039448 801 SAKRHRLDCLYFIIAHVSKDDSEQRRSYIL-SSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEEN-GGGKENLYQF 878 (1276)
Q Consensus 801 ~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i-~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~-~~~~~~l~ef 878 (1276)
...-|..++..|- .+...... ....++ ..++|-++-.+++.+...|..|...|-.|+....+.-. --....+..+
T Consensus 312 -~~~v~~~a~~~L~-~l~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L 388 (530)
T 1wa5_B 312 -STLVQTPALRAVG-NIVTGNDL-QTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPL 388 (530)
T ss_dssp -CHHHHHHHHHHHH-HHTTSCHH-HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHH
T ss_pred -ChhhHHHHHHHHH-HHHcCCHH-HHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence 3445555555443 33433322 112222 24666666677888999999999998888641100000 0001233444
Q ss_pred HHHHhhhccCCChhHHHHHHHHHHHHHHHhh---hhhHHHH--HhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcC
Q 039448 879 FNMVAGGLAGESPHMISAAVKGLARLAYEFS---DLVSNVY--KLLPSTFLLLQRKNREIIKANLGLLKVLVAKSH 949 (1276)
Q Consensus 879 ~~mV~aGLaG~tphMiSatI~ALsrLl~ef~---d~i~~~~--~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp 949 (1276)
+.++ ....+.+...++.||+.+..... +.+..+. .+++.++-+|.+.+.+|...++..+.-++..-+
T Consensus 389 ~~lL----~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 389 VKLL----EVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp HHHH----HHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH----hcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 4433 33468899999999999988653 3333332 467888889999999999999988877765544
No 22
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.84 E-value=0.00029 Score=77.79 Aligned_cols=198 Identities=16% Similarity=0.144 Sum_probs=145.7
Q ss_pred CccchHHHHHHHHHHHH-hccCCChHHH-HhhhHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHhc-cCCCCCCc-c
Q 039448 799 HFSAKRHRLDCLYFIIA-HVSKDDSEQR-RSYILSSFLTEIILAL-KEANKRTRNRAYDVLVQIGRAFG-DEENGGGK-E 873 (1276)
Q Consensus 799 ~~~ak~~RL~cL~~lv~-~l~~~~~~~~-~~~~i~~~lpEiIL~~-Ke~N~ktR~~A~~lLv~mg~~~~-~~~~~~~~-~ 873 (1276)
+++-++.|...+..|.. .+.....-.. ..++ ..++.-+.-+. ||.|..+|..|...|-.|+..+. .. -. .
T Consensus 26 ~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~----f~~~ 100 (249)
T 2qk1_A 26 TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG----FSKD 100 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT----SCHH
T ss_pred hcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccc----ccHH
Confidence 35668888888877766 3322110000 0111 12334444455 89999999999999999998885 32 12 2
Q ss_pred cHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhH--HHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcCh-
Q 039448 874 NLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVS--NVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHA- 950 (1276)
Q Consensus 874 ~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~--~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~- 950 (1276)
-...++.-|+.-+.-..+.++.++..||-.++-.-..... .+..+++.++..|+++|..|-..++.|+--++...+.
T Consensus 101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 3444555555566666688888888887776655422222 2557788888899999999999999999999999886
Q ss_pred -hHHHHHH-HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCHHHHHhcCCH
Q 039448 951 -EGLQIHL-ASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDAVKAVMPE 1001 (1276)
Q Consensus 951 -~~l~~~L-~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~e~V~~~~Pe 1001 (1276)
..+.+|+ +.+++.|...-+|.....|..-...+..+++-+|-+.+..++|+
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~ 233 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEH 233 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 7888999 99999999999999999999999999999999999889888876
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.82 E-value=0.0042 Score=72.50 Aligned_cols=313 Identities=12% Similarity=0.076 Sum_probs=177.4
Q ss_pred HHHHHHHHHhcc--CcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHHH
Q 039448 569 DLAGVLCSALHE--ENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLS 646 (1276)
Q Consensus 569 ~lA~~L~~~L~~--~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~ 646 (1276)
++-+.|...|.+ .+++|...|.+|..+...+. .+...+ ...+.+|
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~-------------------------------~~~~~~--~~~~~i~ 110 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNS-------------------------------LQTRIV--IQAGAVP 110 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCH-------------------------------HHHHHH--HHTTHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCH-------------------------------HHHHHH--HhCCCHH
Confidence 344555566654 47889999998888853210 001111 1357899
Q ss_pred HHHHhhcCCCccccccHHHHHHHhhccCCHHHHHHHHH-HHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHh
Q 039448 647 ILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTRLFK-RTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRA 725 (1276)
Q Consensus 647 vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~~l~~~f~-~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1276)
.|+.+.....++.+.....++...+.-. ++....++. .++..|...... . .....+.
T Consensus 111 ~L~~lL~~~~~~vr~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~~l~~--------~-------------~~~~v~~ 168 (450)
T 2jdq_A 111 IFIELLSSEFEDVQEQAVWALGNIAGDS-TMCRDYVLDCNILPPLLQLFSK--------Q-------------NRLTMTR 168 (450)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTCHHHHHHHTTS--------C-------------CCHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHccCC-HHHHHHHHHCCCHHHHHHHhcC--------C-------------CCHHHHH
Confidence 9999987654433333333444333321 222222222 344555544410 0 1224555
Q ss_pred HHHHHHHHHcCC----CChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhH-HHHHHHHHhhCCCCCc
Q 039448 726 RLFDLALSLLPG----LNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRL-EELLGLMIEVLPSCHF 800 (1276)
Q Consensus 726 ~llDL~~alv~~----l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~-~el~~~L~~~~~~~~~ 800 (1276)
..+..+..+..+ .+...+..+...+...+.+.|..++..|...|..++.........-. ..+...|+..+...
T Consensus 169 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-- 246 (450)
T 2jdq_A 169 NAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN-- 246 (450)
T ss_dssp HHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS--
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC--
Confidence 556666666633 33333334444555666778899999999999999974322111100 12334444444422
Q ss_pred cchHHHHHHHHHHHHhccCCChHHHHhhhHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHH---
Q 039448 801 SAKRHRLDCLYFIIAHVSKDDSEQRRSYILS-SFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLY--- 876 (1276)
Q Consensus 801 ~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~-~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~--- 876 (1276)
...-|..++..|- .+....+. ....++. .+++-++-.+++.|...|..|...|-.|+... ...+.
T Consensus 247 -~~~v~~~a~~~L~-~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~--------~~~~~~~~ 315 (450)
T 2jdq_A 247 -DYKVVSPALRAVG-NIVTGDDI-QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN--------RAQIQTVI 315 (450)
T ss_dssp -CHHHHHHHHHHHH-HHTTSCHH-HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC--------HHHHHHHH
T ss_pred -chhHHHHHHHHHH-HHhhCChH-HHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--------HHHHHHHH
Confidence 3345555555443 33333322 1122222 46676777778889999999999998876411 11111
Q ss_pred --HHHHHHhhhccCCChhHHHHHHHHHHHHHHHh-hhhhHHH--HHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcC
Q 039448 877 --QFFNMVAGGLAGESPHMISAAVKGLARLAYEF-SDLVSNV--YKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSH 949 (1276)
Q Consensus 877 --ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef-~d~i~~~--~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp 949 (1276)
.++..+...|....+.+...++.+|+.+...+ .+.+..+ ..+++.++-+|.+.+.+|.+.++..+.-++..-+
T Consensus 316 ~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 316 DANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 23333444444456889999999999998764 2333332 2577788889999999999999888776665443
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=97.67 E-value=0.0068 Score=73.10 Aligned_cols=314 Identities=13% Similarity=0.095 Sum_probs=176.9
Q ss_pred HHHHHHHHHhcc-C-cccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHHH
Q 039448 569 DLAGVLCSALHE-E-NDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLS 646 (1276)
Q Consensus 569 ~lA~~L~~~L~~-~-~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~ 646 (1276)
++-+.|..+|.+ . +++|...|.+|..+...+. .+...+ ...+.+|
T Consensus 117 g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~-------------------------------~~~~~~--~~~g~i~ 163 (528)
T 4b8j_A 117 GVVPRFVQFLTREDFPQLQFEAAWALTNIASGTS-------------------------------ENTKVV--IDHGAVP 163 (528)
T ss_dssp TCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCH-------------------------------HHHHHH--HHTTHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCH-------------------------------HHHHHH--HhCCcHH
Confidence 355666677765 3 7899999999998864321 011122 1247889
Q ss_pred HHHHhhcCCCccccccHHHHHHHhhccC-CHHHHHHHHHH--HHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhh
Q 039448 647 ILSRIFLESAKDEGGCLQSTIGDFASIA-DKEIVTRLFKR--TMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFM 723 (1276)
Q Consensus 647 vLfNvy~~~~~~~~~~~~~tI~ay~sI~-~~~~l~~~f~~--~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 723 (1276)
.|+.++....++.+. .++.++..|+ +.......+.. ++..|...... ......
T Consensus 164 ~L~~lL~~~~~~v~~---~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~---------------------~~~~~v 219 (528)
T 4b8j_A 164 IFVKLLGSSSDDVRE---QAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNE---------------------HTKLSM 219 (528)
T ss_dssp HHHHHTTCSCHHHHH---HHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCT---------------------TCCHHH
T ss_pred HHHHHhcCCCHHHHH---HHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhc---------------------CCCHHH
Confidence 999988764433333 3444444443 21222222221 33444333200 012234
Q ss_pred HhHHHHHHHHHcCCCC---hhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHH-HHHHHHHhhCCCCC
Q 039448 724 RARLFDLALSLLPGLN---AKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLE-ELLGLMIEVLPSCH 799 (1276)
Q Consensus 724 ~~~llDL~~alv~~l~---~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~-el~~~L~~~~~~~~ 799 (1276)
+......+..|..+-+ ......++..+...+.+.+..++..|...|..++.........-++ .+...|+..+....
T Consensus 220 ~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~ 299 (528)
T 4b8j_A 220 LRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPS 299 (528)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCC
Confidence 5555556666654432 2333344555666778889999999999999999754332211111 23445555555443
Q ss_pred ccchHHHHHHHHHHHHhccCCChHHHHhhhH-HHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhccCC-CCCCcccHH
Q 039448 800 FSAKRHRLDCLYFIIAHVSKDDSEQRRSYIL-SSFLTEIILALKEA-NKRTRNRAYDVLVQIGRAFGDEE-NGGGKENLY 876 (1276)
Q Consensus 800 ~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i-~~~lpEiIL~~Ke~-N~ktR~~A~~lLv~mg~~~~~~~-~~~~~~~l~ 876 (1276)
. .-|..++..|- .++..... ....++ ..++|-++-.+++. +...|..|...|-.|+..-...- .--....+.
T Consensus 300 ~---~v~~~a~~~L~-nl~~~~~~-~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~ 374 (528)
T 4b8j_A 300 P---SVLIPALRTVG-NIVTGDDA-QTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIG 374 (528)
T ss_dssp H---HHHHHHHHHHH-HHTTSCHH-HHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHH
T ss_pred h---hHHHHHHHHHH-HHHcCCHH-HHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHH
Confidence 3 34444444442 33332221 112222 23566666677777 89999999999888874100000 000012344
Q ss_pred HHHHHHhhhccCCChhHHHHHHHHHHHHHHHh-hhhhHHH--HHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhc
Q 039448 877 QFFNMVAGGLAGESPHMISAAVKGLARLAYEF-SDLVSNV--YKLLPSTFLLLQRKNREIIKANLGLLKVLVAKS 948 (1276)
Q Consensus 877 ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef-~d~i~~~--~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~l 948 (1276)
.++.++.. ..+.....++.||+.+...- .+....+ ..+++.++-+|.+.+.+|+..+++.+.-++..-
T Consensus 375 ~L~~lL~~----~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~ 445 (528)
T 4b8j_A 375 PLVNLLQT----AEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVG 445 (528)
T ss_dssp HHHHHHHH----SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc----CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 44444433 36889999999999998873 3333333 256777888999999999999988887766543
No 25
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=97.52 E-value=0.54 Score=61.18 Aligned_cols=324 Identities=12% Similarity=0.160 Sum_probs=175.5
Q ss_pred hhHHHHHHHHHHHhcc-CcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHh
Q 039448 565 ESFMDLAGVLCSALHE-ENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARE 643 (1276)
Q Consensus 565 ~sF~~lA~~L~~~L~~-~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n 643 (1276)
+.+..+-+.|.+.|.+ .+.+|...|.||..+++.... ++++... ++ .+.|..|...
T Consensus 492 ~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~---~~~~~~~-------------~~-------~~~l~p~l~~ 548 (960)
T 1wa5_C 492 AQLIELMPILATFLQTDEYVVYTYAAITIEKILTIRES---NTSPAFI-------------FH-------KEDISNSTEI 548 (960)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSC---SSSCCBS-------------SC-------GGGTTTTHHH
T ss_pred HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccc---ccccccc-------------cc-------HHHhhhhHHH
Confidence 4455554555555544 467899999999999753100 0000000 00 1346677889
Q ss_pred HHHHHHHhhcCC---Ccc--ccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCC
Q 039448 644 LLSILSRIFLES---AKD--EGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNES 718 (1276)
Q Consensus 644 ~L~vLfNvy~~~---~~~--~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1276)
+|..||+++... ++. ....+..||...+.....+ +..++..++..|......... . .
T Consensus 549 ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~-~~p~~~~l~~~L~~~l~~~~~-----~------------~ 610 (960)
T 1wa5_C 549 LLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDS-IQPLFPQLLAQFIEIVTIMAK-----N------------P 610 (960)
T ss_dssp HHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTT-TGGGHHHHHHHHHHHHHHHTT-----S------------C
T ss_pred HHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHh-----C------------C
Confidence 999999998774 111 3356778888777666543 345777777777665533110 0 0
Q ss_pred CchhhHhHHHHHHHHHcCCCChhhHHHHHHHHhhhh----cCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHH--
Q 039448 719 SPDFMRARLFDLALSLLPGLNAKEIDVLFVAIKPAL----QDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMI-- 792 (1276)
Q Consensus 719 ~~~~~~~~llDL~~alv~~l~~~~~~~Lf~~~~~~l----~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~-- 792 (1276)
.....+..++|.+.+++.....+.+..+...+.|.+ +.......--++.++..+++...+| ...+..+...|.
T Consensus 611 ~~~~~~~~~~e~l~~l~~~~~~~~~~~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~~~~~-~~~~~~~~~~l~~~ 689 (960)
T 1wa5_C 611 SNPRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATI-PESIKPLAQPLLAP 689 (960)
T ss_dssp CCHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSC-CTTTGGGHHHHTSG
T ss_pred CCcHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHhccCC-CHHHHHHHHHHcCH
Confidence 222345778999988888766665555555554543 3332334445777887777754332 233334455555
Q ss_pred hhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhH--HHHHH--HHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC
Q 039448 793 EVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYIL--SSFLT--EIILALKEANKRTRNRAYDVLVQIGRAFGDEEN 868 (1276)
Q Consensus 793 ~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i--~~~lp--EiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~ 868 (1276)
...... .--..=.++|..++...+. +|+ ..++. +-++..|. .+..||.+|..|...+...
T Consensus 690 ~~~~~~--~~~~~~~~~L~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~----~~~~a~~ll~~i~~~~~~~-- 753 (960)
T 1wa5_C 690 NVWELK--GNIPAVTRLLKSFIKTDSS--------IFPDLVPVLGIFQRLIASKA----YEVHGFDLLEHIMLLIDMN-- 753 (960)
T ss_dssp GGGCCT--TTHHHHHHHHHHHHHHHGG--------GCSCSHHHHHHHHHHHTCTT----THHHHHHHHHHHHHHSCHH--
T ss_pred HHhcCC--CCchhHHHHHHHHHHhChH--------HHHHHHHHHHHHHHHhCCCc----ccchHHHHHHHHHHHCCHH--
Confidence 333322 1222333445444433221 121 11111 11122232 2488999999998876431
Q ss_pred CCCcccHHHHHHHHhhhccCC-ChhHHHHHHHHHHHHHHHhhh--hhHHHH--------Hhhh-HHHHHhcc--CCHHHH
Q 039448 869 GGGKENLYQFFNMVAGGLAGE-SPHMISAAVKGLARLAYEFSD--LVSNVY--------KLLP-STFLLLQR--KNREII 934 (1276)
Q Consensus 869 ~~~~~~l~ef~~mV~aGLaG~-tphMiSatI~ALsrLl~ef~d--~i~~~~--------~ll~-~v~llL~s--~~REIv 934 (1276)
.-..-+..++.++...|..+ ++.++-+.+..++.++..|+. .++.+. .++. ..+.-+.. .+.|--
T Consensus 754 -~~~~yl~~i~~~l~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~f~~~~~~~w~~~~~~~~~~~erk 832 (960)
T 1wa5_C 754 -RLRPYIKQIAVLLLQRLQNSKTERYVKKLTVFFGLISNKLGSDFLIHFIDEVQDGLFQQIWGNFIITTLPTIGNLLDRK 832 (960)
T ss_dssp -HHGGGHHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTSTTHHHHHHHHTHHHHGGGCCSHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHcCHHHHHHHHHhcchhHHHHHHHHHhccchhhccCHHHHH
Confidence 01235777777777777543 566777888888888776643 222221 1111 11222222 234444
Q ss_pred HHHHHHHHHHHhh
Q 039448 935 KANLGLLKVLVAK 947 (1276)
Q Consensus 935 KsaLgFvKV~v~~ 947 (1276)
-+++|+.+++...
T Consensus 833 ~~~~gl~~ll~~~ 845 (960)
T 1wa5_C 833 IALIGVLNMVING 845 (960)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhcc
Confidence 4589999976654
No 26
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.41 E-value=0.45 Score=58.94 Aligned_cols=257 Identities=12% Similarity=0.095 Sum_probs=152.8
Q ss_pred HHHHHHhhcCCCccccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhH
Q 039448 645 LSILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMR 724 (1276)
Q Consensus 645 L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 724 (1276)
...|..+.....++.+...+.+|...+.. .+..+...+..+ .....+ ++...|
T Consensus 315 ~~~L~~~L~~~d~~vr~~aL~~L~~i~~~-~p~~~~~~~~~i----~~~l~d----------------------~d~~Ir 367 (618)
T 1w63_A 315 INILGRFLLNNDKNIRYVALTSLLKTVQT-DHNAVQRHRSTI----VDCLKD----------------------LDVSIK 367 (618)
T ss_dssp HHHHHHHHTCSSTTTHHHHHHHHHHHHHH-HHHHHGGGHHHH----HHGGGS----------------------SCHHHH
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHhh-CHHHHHHHHHHH----HHHccC----------------------CChhHH
Confidence 34444444555566666666777666653 333333333332 222210 234578
Q ss_pred hHHHHHHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchH
Q 039448 725 ARLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKR 804 (1276)
Q Consensus 725 ~~llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~ 804 (1276)
..-+|++..|+..- ++..+.+.+..++.+.|..+...+.+.|..++.....-....++.+.++|...-..+..
T Consensus 368 ~~alelL~~l~~~~---nv~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~---- 440 (618)
T 1w63_A 368 RRAMELSFALVNGN---NIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRD---- 440 (618)
T ss_dssp HHHHHHHHHHCCSS---STHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCS----
T ss_pred HHHHHHHHHHcccc---cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHH----
Confidence 88899999998753 35556677777787788899999999999999864433445566666666544322222
Q ss_pred HHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCC------CcccHHHH
Q 039448 805 HRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGG------GKENLYQF 878 (1276)
Q Consensus 805 ~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~------~~~~l~ef 878 (1276)
.=+.++..++..-|.. ...+..-|-+.+-... .++.....+.-+|=+.|+.+.+...++ .+..+.++
T Consensus 441 ~~~~~l~~ii~~~p~l------~~~~v~~L~~~l~~~~-~~~~~~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~ 513 (618)
T 1w63_A 441 DAVPNLIQLITNSVEM------HAYTVQRLYKAILGDY-SQQPLVQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDI 513 (618)
T ss_dssp SHHHHHHHHHHHSCST------HHHHHHHHHHHHHHCC-SCSHHHHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHhcChhH------HHHHHHHHHHHHhccc-ccHHHHHHHHHHHhhhHHHhcccccccccccCCCHHHHHHH
Confidence 2234555565543321 2222222333333211 234445567788888888775421111 12345555
Q ss_pred HHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHh
Q 039448 879 FNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVA 946 (1276)
Q Consensus 879 ~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~ 946 (1276)
+..+.... ..+++..++.++|+.++...+.+..+.+..+|. .+..+.+-||-.-|.-|.+.+-.
T Consensus 514 l~~~l~~~-~~~~~vr~~~lta~~Kl~~~~~~~~~~l~~~L~---~~~~~~d~evrdRA~~y~~ll~~ 577 (618)
T 1w63_A 514 LESVLISN-MSTSVTRGYALTAIMKLSTRFTCTVNRIKKVVS---IYGSSIDVELQQRAVEYNALFKK 577 (618)
T ss_dssp HHHHHHST-TCCHHHHHHHHHHHHHHHTTCSSCHHHHHHHHH---HHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcc-CCCHHHHHHHHHHHHHHHHhCcchHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHcC
Confidence 55544443 457999999999999999988765444545543 35788999999888888877543
No 27
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=97.31 E-value=0.011 Score=68.82 Aligned_cols=260 Identities=11% Similarity=0.051 Sum_probs=142.8
Q ss_pred hhHhHHHHHHHHHcCCCChhhHHH-----HHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhH-HHHHHHHHhhC
Q 039448 722 FMRARLFDLALSLLPGLNAKEIDV-----LFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRL-EELLGLMIEVL 795 (1276)
Q Consensus 722 ~~~~~llDL~~alv~~l~~~~~~~-----Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~-~el~~~L~~~~ 795 (1276)
..+......+..+..+-++. ... +...+...+.+.++.+|..|...|..|+.........-+ ..+...|+..+
T Consensus 80 ~v~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l 158 (450)
T 2jdq_A 80 TLQFESAWVLTNIASGNSLQ-TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLF 158 (450)
T ss_dssp HHHHHHHHHHHHHHSSCHHH-HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHH-HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHh
Confidence 45556667776666543322 222 223445566788899999999999999985432211111 12344445544
Q ss_pred CCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC-CCCCccc
Q 039448 796 PSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEE-NGGGKEN 874 (1276)
Q Consensus 796 ~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~-~~~~~~~ 874 (1276)
.. .....-|..++..|. .++..........++..++|-++-.+++.+...|..|...|..++....+.- .-.....
T Consensus 159 ~~--~~~~~v~~~a~~~L~-~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 235 (450)
T 2jdq_A 159 SK--QNRLTMTRNAVWALS-NLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGV 235 (450)
T ss_dssp TS--CCCHHHHHHHHHHHH-HHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTT
T ss_pred cC--CCCHHHHHHHHHHHH-HHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCc
Confidence 42 122344444444332 2222110001133456677777777788899999999999888764110000 0000122
Q ss_pred HHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHH--HhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhH
Q 039448 875 LYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVY--KLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEG 952 (1276)
Q Consensus 875 l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~--~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~ 952 (1276)
+..++. .|...++....+++.+|+.|.....+....+. .+++.+..+|.+.+.+|.+.+++.+.-+...- .+.
T Consensus 236 i~~L~~----ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~-~~~ 310 (450)
T 2jdq_A 236 CRRLVE----LLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGN-RAQ 310 (450)
T ss_dssp HHHHHH----HTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSC-HHH
T ss_pred HHHHHH----HHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHH
Confidence 333333 34455688899999999999876544433322 46777788999999999999998887766432 233
Q ss_pred HHHHH-HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhc
Q 039448 953 LQIHL-ASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKC 990 (1276)
Q Consensus 953 l~~~L-~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKf 990 (1276)
.+..+ ..+++.|+.+-.+.....|...-..|-.|...+
T Consensus 311 ~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~ 349 (450)
T 2jdq_A 311 IQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGG 349 (450)
T ss_dssp HHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCC
Confidence 32222 133333333322222334444444555555443
No 28
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.09 E-value=0.7 Score=56.81 Aligned_cols=214 Identities=10% Similarity=0.066 Sum_probs=115.9
Q ss_pred HHHHhhhc-CCCchhHH-HHHHHHHHHHhccCCCCCcchhhHHHHHHhhccCCchhHHHHHHHHHHHHHhccCCCCCccc
Q 039448 116 VVRVVRLS-SVTAGAVA-SGLTSLSRLLTGRGRVNWSDVSQLYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLAP 193 (1276)
Q Consensus 116 l~~~l~~~-~~~~~~lR-s~i~CL~~LL~aqd~~~W~~~~~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~p~~hp 193 (1276)
+.+.+... ..+.|.+| .++.||+.+- ....|. .....|..+..|+.|-|||.|-.|+..+.+.. |..-+
T Consensus 87 ~~n~l~kdL~~~n~~ir~~AL~~L~~i~---~~~~~~---~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~---p~~~~ 157 (591)
T 2vgl_B 87 AVNSFVKDCEDPNPLIRALAVRTMGCIR---VDKITE---YLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN---AQMVE 157 (591)
T ss_dssp THHHHGGGSSSSSHHHHHHHHHHHHTCC---SGGGHH---HHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS---CCCHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHcCC---hHHHHH---HHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC---hhhcc
Confidence 33444333 44556666 4567776652 222222 24555666677999999999999999998732 21111
Q ss_pred hhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhccCCCch----hHHHHHHHHHHhhccCchhHHHHHHH
Q 039448 194 ASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECLPLMSTK----YTAVILKYFKTLLELRQPLVTRRVTD 269 (1276)
Q Consensus 194 as~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~~~~~~----~~~~i~~~ll~Ll~l~n~~lt~~~~~ 269 (1276)
-. .....+.+.+ ......-..+++.+|..+.+.-+.. ........++..+.-.++++...+++
T Consensus 158 ~~-~~~~~l~~lL------------~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~ 224 (591)
T 2vgl_B 158 DQ-GFLDSLRDLI------------ADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILD 224 (591)
T ss_dssp HH-HHHHHHHHTT------------SCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cc-cHHHHHHHHh------------CCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHH
Confidence 11 1112222222 1113455667777777777653311 22333444444445578888888888
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhc------CHhHHhhhhhHHHHHHHH
Q 039448 270 ALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSI------NREICSTKLPIVFNALKD 343 (1276)
Q Consensus 270 ~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~------~~~~c~~~LP~~f~~~~~ 343 (1276)
+|..+... ..+...+++..+.+...+.+. . |+-+|...+..+ +++.--..++++...+.
T Consensus 225 ~l~~l~~~-----~~~~~~~~l~~l~~~l~~~~~--~-------V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~- 289 (591)
T 2vgl_B 225 CLSNYNPK-----DDREAQSICERVTPRLSHANS--A-------VVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLV- 289 (591)
T ss_dssp HHHTSCCC-----SHHHHHHHHHHHTTCSCSSTT--H-------HHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHH-
T ss_pred HHHHhCCC-----ChHHHHHHHHHHHHHHcCCCh--H-------HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-
Confidence 77554411 234456677777665543221 1 222233444443 23222222233333444
Q ss_pred HhcCCchhHHHHHHHHHHHHHHH
Q 039448 344 ILASEHEEAIFAATEALKNLINA 366 (1276)
Q Consensus 344 ~l~S~~~~v~~~as~~L~~li~~ 366 (1276)
.|.++.++++..|-.+|..+...
T Consensus 290 ~L~~~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 290 TLLSGEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCccHHHHHHHHHHHHHHh
Confidence 34567899999999999888764
No 29
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.05 E-value=0.19 Score=60.49 Aligned_cols=310 Identities=10% Similarity=0.035 Sum_probs=165.2
Q ss_pred HhHHHHHHHhhcCC-CccccccHHHHHHHhhccCC--HHHHHHHH-HHHHHHHHHHHHHhcccccccCCCcccccCCCCC
Q 039448 642 RELLSILSRIFLES-AKDEGGCLQSTIGDFASIAD--KEIVTRLF-KRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNE 717 (1276)
Q Consensus 642 ~n~L~vLfNvy~~~-~~~~~~~~~~tI~ay~sI~~--~~~l~~~f-~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1276)
...+|.|+.+.... .+..+ ..++.+...|+. ++....+. ..++..|......
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~---~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~--------------------- 184 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQ---LEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYT--------------------- 184 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHH---HHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH---------------------
T ss_pred CCCHHHHHHHhCCCCCHHHH---HHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcC---------------------
Confidence 57889999887654 22222 244455545543 33322222 2334444444421
Q ss_pred CCchhhHhHHHHHHHHHcCCCChhhHHHHH-----HHHhhhhcCCchhhhhHHHHHHHHHHhcC-cchhhhhHHHHHHHH
Q 039448 718 SSPDFMRARLFDLALSLLPGLNAKEIDVLF-----VAIKPALQDDEGLIQKKAYKVLSTILRKC-DGFLSSRLEELLGLM 791 (1276)
Q Consensus 718 ~~~~~~~~~llDL~~alv~~l~~~~~~~Lf-----~~~~~~l~~~d~~~QKKAYk~L~~i~~~~-~~f~~~~~~el~~~L 791 (1276)
+....+...+..+..++..-+ +....++ ..+...+.+.+..++..|...|..++... ...-......+...|
T Consensus 185 -~~~~vr~~A~~aL~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L 262 (530)
T 1wa5_B 185 -GSVEVKEQAIWALGNVAGDST-DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL 262 (530)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCH-HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHH
T ss_pred -CCHHHHHHHHHHHHHHhCCCc-cchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHH
Confidence 112344444444444443321 2222222 23344556678899999999999999753 211111223344555
Q ss_pred HhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Q 039448 792 IEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILS-SFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGG 870 (1276)
Q Consensus 792 ~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~-~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~ 870 (1276)
+..+.......+..=+.+|..| .....+ ....++. .++|-++-.+++.+...|..|...|-.|+...
T Consensus 263 ~~lL~~~d~~v~~~a~~~L~~L----~~~~~~-~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~------- 330 (530)
T 1wa5_B 263 AKLIYSMDTETLVDACWAISYL----SDGPQE-AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGN------- 330 (530)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHH----HSSCHH-HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC-------
T ss_pred HHHHcCCCHHHHHHHHHHHHHH----hCCCHH-HHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCC-------
Confidence 5555433333333333344433 332221 1222332 45666666778899999999999888776411
Q ss_pred CcccHH-----HHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHH--HHhhhHHHHHhccCCHHHHHHHHHHHHH
Q 039448 871 GKENLY-----QFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNV--YKLLPSTFLLLQRKNREIIKANLGLLKV 943 (1276)
Q Consensus 871 ~~~~l~-----ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~--~~ll~~v~llL~s~~REIvKsaLgFvKV 943 (1276)
..... .++..+..-|....+....+++.+|+.|.....+.+..+ ..+++.++-+|.+.+.+|.+.++..+.-
T Consensus 331 -~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~ 409 (530)
T 1wa5_B 331 -DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISN 409 (530)
T ss_dssp -HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 01111 233344445555568899999999999886444444332 2567777778888999999998888877
Q ss_pred HHhhcCh--hHHHHHH-HHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhc
Q 039448 944 LVAKSHA--EGLQIHL-ASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKC 990 (1276)
Q Consensus 944 ~v~~lp~--~~l~~~L-~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKf 990 (1276)
++..... +.....+ ..+++.|+..-.+.....+..+=..|..|++..
T Consensus 410 l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 410 ASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMG 459 (530)
T ss_dssp HHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 7665433 2222111 113333333322223345555556666666544
No 30
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=97.03 E-value=0.03 Score=69.11 Aligned_cols=293 Identities=13% Similarity=0.199 Sum_probs=183.3
Q ss_pred HHHHHHHHHHhcc-CcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHHH
Q 039448 568 MDLAGVLCSALHE-ENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLS 646 (1276)
Q Consensus 568 ~~lA~~L~~~L~~-~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~ 646 (1276)
..+.+.|-..|.+ +|.+|...+.+|..+...+. +.. . -..|++
T Consensus 120 ~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p---------~~~----------------------~-----~~~~~~ 163 (591)
T 2vgl_B 120 EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINA---------QMV----------------------E-----DQGFLD 163 (591)
T ss_dssp HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSC---------CCH----------------------H-----HHHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhCh---------hhc----------------------c-----cccHHH
Confidence 4455556666664 78999999999998876431 110 0 026778
Q ss_pred HHHHhhcCCCccccccHHHHHHHhhccCCHH-------HHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCC
Q 039448 647 ILSRIFLESAKDEGGCLQSTIGDFASIADKE-------IVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESS 719 (1276)
Q Consensus 647 vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~-------~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 719 (1276)
.|..+.....+ +....++.++..|+... .....|.+.++.+.+ .
T Consensus 164 ~l~~lL~d~d~---~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~--------------------------~ 214 (591)
T 2vgl_B 164 SLRDLIADSNP---MVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNE--------------------------C 214 (591)
T ss_dssp HHHHTTSCSCH---HHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHH--------------------------C
T ss_pred HHHHHhCCCCh---hHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCC--------------------------C
Confidence 88887765433 33345666666665432 123344444444321 2
Q ss_pred chhhHhHHHHHHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhc---CcchhhhhHHHHHHHHHhhCC
Q 039448 720 PDFMRARLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRK---CDGFLSSRLEELLGLMIEVLP 796 (1276)
Q Consensus 720 ~~~~~~~llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~---~~~f~~~~~~el~~~L~~~~~ 796 (1276)
.++....+++++..+.|. +.+....+++.+.+.+++.++.+...|-++|..+... ....+......+...|.....
T Consensus 215 ~~~~q~~il~~l~~l~~~-~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~ 293 (591)
T 2vgl_B 215 TEWGQIFILDCLSNYNPK-DDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS 293 (591)
T ss_dssp CHHHHHHHHHHHHTSCCC-SHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT
T ss_pred CchHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc
Confidence 346777888877665554 3455677888888999999999999999988887642 223333333344444443322
Q ss_pred CCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHH
Q 039448 797 SCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLY 876 (1276)
Q Consensus 797 ~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ 876 (1276)
....-|..=|.+|..++...|... ...+. .++|.-+.....|..|.++|..|++ +.++.
T Consensus 294 -~d~~vr~~aL~~l~~i~~~~p~~~-----~~~~~-----~~~~~~~d~~~Ir~~al~~L~~l~~----------~~nv~ 352 (591)
T 2vgl_B 294 -GEPEVQYVALRNINLIVQKRPEIL-----KQEIK-----VFFVKYNDPIYVKLEKLDIMIRLAS----------QANIA 352 (591)
T ss_dssp -SCHHHHHHHHHHHHHHHHHCCSTT-----TTCTT-----TTSCCTTSCHHHHHHHHHHHHHTCC----------SSTHH
T ss_pred -CCccHHHHHHHHHHHHHHhChHHH-----HHHHH-----hheeccCChHHHHHHHHHHHHHHCC----------hhhHH
Confidence 223334444444444444323221 11111 2346533338889999999888753 34677
Q ss_pred HHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcCh
Q 039448 877 QFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHA 950 (1276)
Q Consensus 877 ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~ 950 (1276)
+.+.-+...+....+++...+|.+|+.+.-.|... ....++.++-+|...+-.|++.++-.++-.+...|.
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~---~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~ 423 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS---AERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPN 423 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH---HHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcc
Confidence 77777777777767999999999999999887532 334566667788888889999888888887777774
No 31
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.88 E-value=0.23 Score=59.63 Aligned_cols=227 Identities=11% Similarity=0.033 Sum_probs=129.2
Q ss_pred cCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHH-HH
Q 039448 755 QDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILS-SF 833 (1276)
Q Consensus 755 ~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~-~~ 833 (1276)
.+.+..+++.|-.+|..+|.............+...|...+.+.. ..-|..++..|. .++....+ ....++. .+
T Consensus 213 ~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~---~~v~~~a~~aL~-~l~~~~~~-~~~~~~~~g~ 287 (528)
T 4b8j_A 213 EHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSND---EEVLTDACWALS-YLSDGTND-KIQAVIEAGV 287 (528)
T ss_dssp TTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCC---HHHHHHHHHHHH-HHTSSCHH-HHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHH-HHHcCCHH-HHHHHHHcCH
Confidence 456789999999999999985322212223445555555554333 344455554443 33433322 1112222 46
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC-CCCCcccHHHHHHHHhhhccCC-ChhHHHHHHHHHHHHHHHhhhh
Q 039448 834 LTEIILALKEANKRTRNRAYDVLVQIGRAFGDEE-NGGGKENLYQFFNMVAGGLAGE-SPHMISAAVKGLARLAYEFSDL 911 (1276)
Q Consensus 834 lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~-~~~~~~~l~ef~~mV~aGLaG~-tphMiSatI~ALsrLl~ef~d~ 911 (1276)
+|-++-.+++.+...|..|...|-.|+....... .--....+..++. .|... .+.+...++.+|+.|.....+.
T Consensus 288 v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~----lL~~~~~~~v~~~A~~~L~nl~~~~~~~ 363 (528)
T 4b8j_A 288 CPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLS----LLTQNLKKSIKKEACWTISNITAGNKDQ 363 (528)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHH----HHHSCCCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHH----HHcCCCcHHHHHHHHHHHHHHHCCCHHH
Confidence 6677777788899999999998888765110000 0000122333333 34444 6889999999999998644444
Q ss_pred hHHHH--HhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHH-HHHHHHHhhcchhhHHHHHHHHHHHHHHHHH
Q 039448 912 VSNVY--KLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHL-ASMVEGLLKWQDDTKNQFKSKIKLLLEMLVK 988 (1276)
Q Consensus 912 i~~~~--~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L-~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIR 988 (1276)
+..+. .+++.++-+|.+.+.++.+.+++.+.-++..-..+.....+ ..+++.|+..-.+.....+..+=..|..|++
T Consensus 364 ~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~ 443 (528)
T 4b8j_A 364 IQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 44322 56777788889999999999998888777664433332211 1223333322222223444455556666665
Q ss_pred hc
Q 039448 989 KC 990 (1276)
Q Consensus 989 Kf 990 (1276)
..
T Consensus 444 ~~ 445 (528)
T 4b8j_A 444 VG 445 (528)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 32
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=96.72 E-value=0.11 Score=63.01 Aligned_cols=333 Identities=12% Similarity=0.131 Sum_probs=173.3
Q ss_pred HHHHhhhhCCCCCCcchhhhHH-HHHHHHHHHhc--cCcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhh
Q 039448 547 YSLWSLLPSFCNYPVDTAESFM-DLAGVLCSALH--EENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMA 623 (1276)
Q Consensus 547 ~QlWsLLPgFC~~P~D~~~sF~-~lA~~L~~~L~--~~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1276)
..++.+|-.--+-|.|. -.. +.-+.|..+|. +.|+++...|.+|.++...+..
T Consensus 98 ~~~rklLs~~~~~~i~~--ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~---------------------- 153 (529)
T 3tpo_A 98 QAARKLLSREKQPPIDN--IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE---------------------- 153 (529)
T ss_dssp HHHHHHHTSSSCCCHHH--HHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH----------------------
T ss_pred HHHHHHHcCCCCchHHH--HHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHH----------------------
Confidence 45666664433445442 112 45677777775 3588999999999988533210
Q ss_pred cCChHHHHHhHHHHHHhhHhHHHHHHHhhcCCCccccccHHHHHHHhhccC-CHHHHHHHHHH--HHHHHHHHHHHhccc
Q 039448 624 HYTTKVATDNLNVLKSSARELLSILSRIFLESAKDEGGCLQSTIGDFASIA-DKEIVTRLFKR--TMHRLLEATQEAGKT 700 (1276)
Q Consensus 624 ~~s~~~A~~nl~~L~~~A~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~-~~~~l~~~f~~--~~~kL~~~~~~~~~~ 700 (1276)
+...+ .....+|.|..+.....++.+ ..++.+...|+ +.+.....+.. ++..|.......
T Consensus 154 ---------~~~~v--v~~Gaip~Lv~LL~s~~~~v~---e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~--- 216 (529)
T 3tpo_A 154 ---------QTKAV--VDGGAIPAFISLLASPHAHIS---EQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVP--- 216 (529)
T ss_dssp ---------HHHHH--HHTTHHHHHHHHTTCSCHHHH---HHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSS---
T ss_pred ---------HHHHH--HHCCCHHHHHHHHcCCCHHHH---HHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhcc---
Confidence 01111 124678888887766543332 24555555554 22222332211 233333322100
Q ss_pred ccccCCCcccccCCCCCCCchhhHhHHHHHHHHHc----CCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcC
Q 039448 701 KSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLL----PGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKC 776 (1276)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv----~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~ 776 (1276)
..+ . ......+.... .+..+. +..+...+..+...+...+.+.+..++..|...|..++...
T Consensus 217 ---~~~---------~-~~~~~~~~a~~-~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~ 282 (529)
T 3tpo_A 217 ---DLS---------T-LACGYLRNLTW-TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 282 (529)
T ss_dssp ---CGG---------G-SCHHHHHHHHH-HHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC
T ss_pred ---chh---------H-hHHHHHHHHHH-HHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhh
Confidence 000 0 01111222222 222222 33344445555566667778889999999999999998754
Q ss_pred cchhhhhH-HHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHH-HHHHHHHHHhhhhhHHHHHHHHH
Q 039448 777 DGFLSSRL-EELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILS-SFLTEIILALKEANKRTRNRAYD 854 (1276)
Q Consensus 777 ~~f~~~~~-~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~-~~lpEiIL~~Ke~N~ktR~~A~~ 854 (1276)
......-. ..+...|++.+.+.....+.+=++||..++ ...++ ....++. -.++=.+-.++..+...|..|.-
T Consensus 283 ~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~----~~~~~-~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~ 357 (529)
T 3tpo_A 283 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV----TGTDE-QTQKVIDAGALAVFPSLLTNPKTNIQKEATW 357 (529)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT----TSCHH-HHHHHHHTTGGGGHHHHTTCSSHHHHHHHHH
T ss_pred hhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHH----ccchH-HHHHHhhcccHHHHHHHHcCCCHHHHHHHHH
Confidence 33211100 112334444444444445555555555543 22222 1112221 12333334457788889999988
Q ss_pred HHHHHHHHhccCCCCCCcccHH--HHHHHHhhhccCCChhHHHHHHHHHHHHHHHhh-hhhHHHH--HhhhHHHHHhccC
Q 039448 855 VLVQIGRAFGDEENGGGKENLY--QFFNMVAGGLAGESPHMISAAVKGLARLAYEFS-DLVSNVY--KLLPSTFLLLQRK 929 (1276)
Q Consensus 855 lLv~mg~~~~~~~~~~~~~~l~--ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~-d~i~~~~--~ll~~v~llL~s~ 929 (1276)
.|-.|+..- +.....+. ..+..+..-|...++.....++.||+.+..... +.+..+. ..++..+-+|.++
T Consensus 358 aL~nl~~~~-----~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~ 432 (529)
T 3tpo_A 358 TMSNITAGR-----QDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 432 (529)
T ss_dssp HHHHHHTSC-----HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHhccc-----HHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCC
Confidence 887775410 00000000 122223333444568889999999999886542 2333222 4567778899999
Q ss_pred CHHHHHHHHHHHHHH
Q 039448 930 NREIIKANLGLLKVL 944 (1276)
Q Consensus 930 ~REIvKsaLgFvKV~ 944 (1276)
+.+|+..+|+.+.-+
T Consensus 433 d~~i~~~~L~aL~ni 447 (529)
T 3tpo_A 433 DTKIIQVILDAISNI 447 (529)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988776543
No 33
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=96.71 E-value=0.024 Score=62.85 Aligned_cols=187 Identities=15% Similarity=0.152 Sum_probs=123.9
Q ss_pred hcCCchhhhhHHHHHHHHHHhcCcch-----hhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCCh-HHHHh
Q 039448 754 LQDDEGLIQKKAYKVLSTILRKCDGF-----LSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDS-EQRRS 827 (1276)
Q Consensus 754 l~~~d~~~QKKAYk~L~~i~~~~~~f-----~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~-~~~~~ 827 (1276)
|.+++=...+.||.-|..+++....- ....+.++..++-..+......+...-+.||..++..+..... .....
T Consensus 18 l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~ 97 (278)
T 4ffb_C 18 LTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNI 97 (278)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhH
Confidence 44555566788998888888642110 0011112222333333344566677778888888765433221 00123
Q ss_pred hhHHHHHHHHHH-HhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHH
Q 039448 828 YILSSFLTEIIL-ALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAY 906 (1276)
Q Consensus 828 ~~i~~~lpEiIL-~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ 906 (1276)
.++..++|-+|- |+.+.+.++|..|.+.|..+..... ....++..+..|+...+|..+++++..|++++-
T Consensus 98 ~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~---------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~ 168 (278)
T 4ffb_C 98 TLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT---------SITQSVELVIPFFEKKLPKLIAAAANCVYELMA 168 (278)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS---------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC---------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 455666665554 3567889999999999998876432 345677888999999999999999999999999
Q ss_pred Hhhh-hhH---HHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcC
Q 039448 907 EFSD-LVS---NVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSH 949 (1276)
Q Consensus 907 ef~d-~i~---~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp 949 (1276)
+|+- .++ .+..+++.+.-+|.+.|.+|..+++.++-.+...+-
T Consensus 169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G 215 (278)
T 4ffb_C 169 AFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG 215 (278)
T ss_dssp HHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred HhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 9953 222 345677788889999999999999999877665543
No 34
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=96.63 E-value=3.2 Score=54.30 Aligned_cols=628 Identities=14% Similarity=0.147 Sum_probs=297.7
Q ss_pred hHHHHHHHHHHhhccCCCchhH--HHHHHHHHHhhccCchhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHh-----cc
Q 039448 224 QEVLYVLDALKECLPLMSTKYT--AVILKYFKTLLELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSL-----AL 296 (1276)
Q Consensus 224 ~~~lh~L~lLk~~l~~~~~~~~--~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL-----~~ 296 (1276)
.-+-.+|.-|..+++..+...+ ..+.+.+..++. ++-+...|.+||+.+...... ++.-.++|..| +.
T Consensus 208 ~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~---~~~k~~li~~l~L~~~~~ 282 (980)
T 3ibv_A 208 GTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMK---PLEKLNLLNILNLNLFFS 282 (980)
T ss_dssp HHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCC---hhhHHHHHHHHhHHHHHH
Confidence 3456788888888887666655 355555655554 478889999999999865532 33322333222 22
Q ss_pred cCCCCCCchhhHHHHHHHHHH---HHHHHHhcCH-----h---HHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 039448 297 SVSTNETSADAMTFTARLLNV---GMIKIYSINR-----E---ICSTKLPIVFNALKDILASEHEEAIFAATEALKNLIN 365 (1276)
Q Consensus 297 ~~~~~~~~~~~l~~~~~vl~~---a~~~l~~~~~-----~---~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~ 365 (1276)
.....+.+.+.+.-+++++.. .+..+ .-++ + .+..++-.++..+..++..+..+|...+-+-+..++.
T Consensus 283 ~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l~ 361 (980)
T 3ibv_A 283 KSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLLV 361 (980)
T ss_dssp C-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHHH
T ss_pred HHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence 111112333434344444432 22222 1121 1 2234444445555555555555554444444333322
Q ss_pred HhhchhHHhhhcccccccCCCcCCCChHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHh
Q 039448 366 ACIDESLIKQGVDQITNVNSDARKSGPTVIEKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYSSYFMRGALKNLAD 445 (1276)
Q Consensus 366 ~ci~~~~~~~~v~~~~~~~~~~~~~~~~~i~~i~~~~~~~L~~~y~~aw~~vL~vl~~lf~~lg~~~~~~l~~~L~~l~~ 445 (1276)
..-.. . . ...+... .-+++.+++.+++.++.+-... +
T Consensus 362 ~~~~~-----~--~-----------------------~~~~~~~---~~~~l~~Ll~~li~k~~yp~d~----------~ 398 (980)
T 3ibv_A 362 SLRKE-----S--S-----------------------SKELSAS---LKEFLKSLLEAIIKKMKYDESQ----------E 398 (980)
T ss_dssp HHHHH-----T--T-----------------------SCCCCHH---HHHHHHHHHHHHHHTTSCCTTC----------C
T ss_pred HHHhc-----c--c-----------------------cccccHH---HHHHHHHHHHHHHHHccCCCcc----------c
Confidence 11000 0 0 0000001 1144555555566665553221 1
Q ss_pred hhcCCC-CC----CcchhHHHHHHHHHHHhcChhhHhh----cccCccccC-cccccccc--------hhhhhhhccCC-
Q 039448 446 MQNLPD-ED----FPYRKQLHECVGSAVGSMGPETFLC----LLPLKLEAS-DLSEVNVW--------LFPILKQYIIG- 506 (1276)
Q Consensus 446 lr~~~~-~~----f~~~~~ld~~iGaAi~amGPe~vL~----~lPLnl~~~-~~~~~RaW--------LLPlLr~~i~~- 506 (1276)
|-...+ ++ ..+|+.+. ++-.++..+||+.++. .+.--+... .......| .|-.+-+.+++
T Consensus 399 ~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~ 477 (980)
T 3ibv_A 399 WDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGP 477 (980)
T ss_dssp CCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSG
T ss_pred cccccchhHHHHHHHHHHHHH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhcccc
Confidence 111000 11 24667777 6777888999999998 543222110 00112346 23333444432
Q ss_pred --------CChHhHHHHHHHHHHHHHHHhHHhhhhccchhhhhHHHHHHHHHhhhhCCCCCCcchhhhHHH-HHHHHH--
Q 039448 507 --------ARLNFFMEKLLGMAKLIGQKSQKFELEGRVFSSRSADALVYSLWSLLPSFCNYPVDTAESFMD-LAGVLC-- 575 (1276)
Q Consensus 507 --------t~L~fF~~~~lPLa~~~~~k~~~~~~~~~~~~ak~~~tL~~QlWsLLPgFC~~P~D~~~sF~~-lA~~L~-- 575 (1276)
..+...+..+..|.. .. ......+ .+..+.=.++=.||.+=..-++.++. +.-.+.
T Consensus 478 ~~~~~~~~~~lp~l~~ll~~ll~---s~---i~~~~hp-------~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~ 544 (980)
T 3ibv_A 478 DAFFNEVDKSPTVLSQILALVTT---SQ---VCRHPHP-------LVQLLYMEILVRYASFFDYESAAIPALIEYFVGPR 544 (980)
T ss_dssp GGTBCSSSCCBCHHHHHHHHHHH---SS---TTTCCCH-------HHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTT
T ss_pred ccccCcccchhHHHHHHHHHHHh---CC---CCCCCCH-------HHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccc
Confidence 334444444443322 11 1111111 11222222222333322222244444 322333
Q ss_pred HHhccCcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHHHHHHHhhcCC
Q 039448 576 SALHEENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLSILSRIFLES 655 (1276)
Q Consensus 576 ~~L~~~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~vLfNvy~~~ 655 (1276)
.+...++.+|...|.+|+++++..+.. |..|+..+|..+-+++...
T Consensus 545 gl~~~~~~V~~~a~~af~~f~~~~~~~----------------------------------L~~~~~~il~~l~~lL~~~ 590 (980)
T 3ibv_A 545 GIHNTNERVRPRAWYLFYRFVKSIKKQ----------------------------------VVNYTESSLAMLGDLLNIS 590 (980)
T ss_dssp TTTCCCTTTHHHHHHHHHHHHHHTTTT----------------------------------CSSSHHHHHHHTTGGGCCC
T ss_pred cccCCChhHHHHHHHHHHHHHHHhhHH----------------------------------hhhHHHHHHHHHHHhhcCc
Confidence 233346789999999999999886432 2223344454444444421
Q ss_pred C-c--------------------cccccHHHHHHHhhccC--CHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccccc
Q 039448 656 A-K--------------------DEGGCLQSTIGDFASIA--DKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQID 712 (1276)
Q Consensus 656 ~-~--------------------~~~~~~~~tI~ay~sI~--~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~ 712 (1276)
. + ++.-++.++|+..++.. |++....+++.++.-|....+..-... ...
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl~~~l~~~l~~~-~~~------- 662 (980)
T 3ibv_A 591 VSPVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCDSLINALIGKANAALSSD-LSA------- 662 (980)
T ss_dssp CCCCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTS-CC--------
T ss_pred CCCCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhc-ccC-------
Confidence 1 1 12345779999999775 567777777777666555443211100 000
Q ss_pred CCCCCCCchhhHhHHHHHHH---HHcCCCChh-----hHHHHHH----HHhhhhc--CCchhhhhHHHHHHHHHHhcCcc
Q 039448 713 DSSNESSPDFMRARLFDLAL---SLLPGLNAK-----EIDVLFV----AIKPALQ--DDEGLIQKKAYKVLSTILRKCDG 778 (1276)
Q Consensus 713 ~~~~~~~~~~~~~~llDL~~---alv~~l~~~-----~~~~Lf~----~~~~~l~--~~d~~~QKKAYk~L~~i~~~~~~ 778 (1276)
.. ... .+.+++. .++++.+.- .+...|. .+...+. ..+..+.-++-+.+.+++..-..
T Consensus 663 ------~~-~~~-~i~~~i~al~~lakgf~~~~~~~~p~~~~f~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~lg~ 734 (980)
T 3ibv_A 663 ------LE-NII-SVYCSLMAIGNFAKGFPARGSEEVAWLASFNKASDEIFLILDRMGFNEDIRGAVRFTSGRIINVVGP 734 (980)
T ss_dssp -------C-HHH-HHHHHHHHHHHHHHTSCSCC-CCCSHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTTTHH
T ss_pred ------cc-HHH-HHHHHHHHHHHHhccCCcccCCCCcHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH
Confidence 01 111 3444443 334333210 0333333 3334443 35677778899999999885455
Q ss_pred hhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhh---------hHHHH
Q 039448 779 FLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEA---------NKRTR 849 (1276)
Q Consensus 779 f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~---------N~ktR 849 (1276)
.+...+..+.+.|+.. +...--..=|.++..+|.. -+.+--.-...+++.++.=+--.+.+. .+-.|
T Consensus 735 ~~~p~lp~~i~~ll~~---~~~~e~~~fL~l~~qli~~-f~~~~~~~l~~ll~~l~~~if~~l~~~~~~td~~r~~~~l~ 810 (980)
T 3ibv_A 735 DMLPKVPQLISILLNS---IDMNELVDVLSFISQLIHI-YKDNMMEITNRMLPTLLMRIFSSLSAAPQGTDDAVKQNDLR 810 (980)
T ss_dssp HHTTTHHHHHHHHHHH---CCTTTHHHHHHHHHHHHHH-TTTTSHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHH
Confidence 5778888888888854 2344445556666666633 232210011222222222111111211 13356
Q ss_pred HHHHHHHHHHHHHhc-cCC-CCCCcccHHHHHHHHhhhcc--CCChhHHHHHHHHHHHHHHHhhh-h-hH----HHHHhh
Q 039448 850 NRAYDVLVQIGRAFG-DEE-NGGGKENLYQFFNMVAGGLA--GESPHMISAAVKGLARLAYEFSD-L-VS----NVYKLL 919 (1276)
Q Consensus 850 ~~A~~lLv~mg~~~~-~~~-~~~~~~~l~ef~~mV~aGLa--G~tphMiSatI~ALsrLl~ef~d-~-i~----~~~~ll 919 (1276)
++=|.+|..|.+.-. .-. ++.+.+.++..+..|..|-. +. |...=+++..|++++-.+.+ . ++ -+.+.+
T Consensus 811 r~~~~fl~~i~~~~~~~v~~s~~n~~~l~~~l~~l~~~a~~~~d-~~~~K~a~~~l~~~v~~~~~~~~~~gf~~f~~~~~ 889 (980)
T 3ibv_A 811 KSYISFILQLLNKGFGSILFTEENQVYFDPLINSILHFANLVGE-PATQKSSIALVSKMVSLWGGKDGIAGFENFTLSLT 889 (980)
T ss_dssp HHHHHHHHHHHHTTCTGGGGSHHHHTTHHHHHHHHHHHC------CHHHHHHHHHHHHHHHC-------CCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchhhhcCCcchHHHHHHHHHHHHHhccCCC-hHHHHHHHHHHHHHHHHHCCCCcchHHHHHHHHHH
Confidence 666777777766211 100 01124567777765554322 44 66777889999999999853 1 11 133355
Q ss_pred hHHHHHhcc--------CCHHHHHHHHHHHHHHHhhcChhHHHHHH-HHHHHHHhhcchhh
Q 039448 920 PSTFLLLQR--------KNREIIKANLGLLKVLVAKSHAEGLQIHL-ASMVEGLLKWQDDT 971 (1276)
Q Consensus 920 ~~v~llL~s--------~~REIvKsaLgFvKV~v~~lp~~~l~~~L-~~lv~~Ll~ws~d~ 971 (1276)
+.++....+ .++-|+-=+-++.|++..+.-.+.+ .|| ...+|++ .|+.+.
T Consensus 890 ~~~f~~p~~~~f~~~Daq~~~~~~e~~~~~k~~~~~~g~~~~-~~l~~~~lp~~-~~~~~~ 948 (980)
T 3ibv_A 890 PLCFEMPVNPNFNTRDGQSLVVLGELAGLQKIILEKLGDIYK-SYLVTVYFPTV-NFPDVM 948 (980)
T ss_dssp HHHHHGGGC----------CHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTTTC-----CCH
T ss_pred HHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHhcCCcC-CCCHHH
Confidence 555544433 3444555667788888777744433 445 3344443 555554
No 35
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.58 E-value=0.014 Score=63.13 Aligned_cols=194 Identities=12% Similarity=0.112 Sum_probs=121.4
Q ss_pred HHHHhhccCchhHHHHHHHHHHHHhcCCCCCC---CHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCH
Q 039448 251 YFKTLLELRQPLVTRRVTDALNVICLHPTLEV---SAEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINR 327 (1276)
Q Consensus 251 ~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~l---~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~ 327 (1276)
.+...++-.+.-....+...|..+..+.+... -.+.+..+...|. .+.+... ....+. ++..++..-.
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~---kd~~~~V--~~~a~~----~l~~la~~l~ 89 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVIT---KDSNVVL--VAMAGK----CLALLAKGLA 89 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHH---HCSCHHH--HHHHHH----HHHHHHHHHG
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhc---cCCCHHH--HHHHHH----HHHHHHHHHh
Confidence 45666677888899999999999987632211 1222222333331 0222111 111111 2222221111
Q ss_pred hHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCCCChHHHHHHHHHHHhhhh
Q 039448 328 EICSTKLPIVFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGPTVIEKICATVESLLD 407 (1276)
Q Consensus 328 ~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~~~~~~i~~i~~~~~~~L~ 407 (1276)
.....+++.++..+...|...+..|+.+|.++|.+++..+ + +..++..+...|+
T Consensus 90 ~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~-~-------------------------~~~ll~~l~~~l~ 143 (242)
T 2qk2_A 90 KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAST-S-------------------------LEAQQESIVESLS 143 (242)
T ss_dssp GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS-C-------------------------HHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC-C-------------------------HHHHHHHHHHHHc
Confidence 1234578888999999999999999999999999886521 1 1233344444555
Q ss_pred cchhhhHHHHHHHHHHHHHhhccc--chhhHHHHHHHHHhhhcCCCCCCcchhHHHHHHHHHHHhcChhhHhhccc
Q 039448 408 YHYSAVWDMAFQIVSTMFDKLGTY--SSYFMRGALKNLADMQNLPDEDFPYRKQLHECVGSAVGSMGPETFLCLLP 481 (1276)
Q Consensus 408 ~~y~~aw~~vL~vl~~lf~~lg~~--~~~~l~~~L~~l~~lr~~~~~~f~~~~~ld~~iGaAi~amGPe~vL~~lP 481 (1276)
-+....=..++..++.++...+.. ..+++..++..|-.+-. |.+-.-|..+-.|+|...+++|.+.+-..+|
T Consensus 144 ~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~~l~p~l~~~l~--D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~ 217 (242)
T 2qk2_A 144 NKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLN--EPDPTVRDSSAEALGTLIKLMGDKAVTPLLA 217 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHT--SSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT
T ss_pred CCChHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 444445567888888888887643 34667777777766654 4466788999999999999999988777665
No 36
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.53 E-value=0.16 Score=53.82 Aligned_cols=229 Identities=14% Similarity=0.153 Sum_probs=135.2
Q ss_pred HhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHH-HHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhh
Q 039448 750 IKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLE-ELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSY 828 (1276)
Q Consensus 750 ~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~-el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~ 828 (1276)
+...+.+.++.+|..|-+.|..++.........-++ .+...|+..+.+.. ..-|..++..|- .+.....+ ....
T Consensus 7 L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~---~~v~~~a~~~L~-~l~~~~~~-~~~~ 81 (252)
T 4hxt_A 7 LVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTD---SEVQKEAARALA-NIASGPDE-AIKA 81 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSC---HHHHHHHHHHHH-HHTTSCHH-HHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCC---HHHHHHHHHHHH-HHHcCChH-HHHH
Confidence 345667778999999999999999854322111111 24455555555433 444555555443 33443222 2233
Q ss_pred hHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHH--HHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 039448 829 ILS-SFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLY--QFFNMVAGGLAGESPHMISAAVKGLARLA 905 (1276)
Q Consensus 829 ~i~-~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~--ef~~mV~aGLaG~tphMiSatI~ALsrLl 905 (1276)
++. ..++-++-.+++.+...|..|...|..|+....+ ....+. ..+..+..-|...++.+...++.+|+.|.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~-----~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE-----AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHH-----HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-----HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 333 3677777778899999999999999998741100 000000 12333444455667899999999999998
Q ss_pred HHhhhhhHHH--HHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHH-HHHHHHHhhcchhhHHHHHHHHHHH
Q 039448 906 YEFSDLVSNV--YKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHL-ASMVEGLLKWQDDTKNQFKSKIKLL 982 (1276)
Q Consensus 906 ~ef~d~i~~~--~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L-~~lv~~Ll~ws~d~k~hfR~KVr~I 982 (1276)
....+....+ ...++.+.-+|.+.+.++...+++.+.-+...-| +..+... ..+++.|+.+-++.....|...-.+
T Consensus 157 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~ 235 (252)
T 4hxt_A 157 SGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPT-SAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRA 235 (252)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBH-HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHH
Confidence 7554443322 3567777889999999999999998887665332 2221111 2234444444333333555555555
Q ss_pred HHHHHHh
Q 039448 983 LEMLVKK 989 (1276)
Q Consensus 983 lerLIRK 989 (1276)
|..|...
T Consensus 236 L~~l~~~ 242 (252)
T 4hxt_A 236 LENIKSG 242 (252)
T ss_dssp HHHHHHT
T ss_pred HHHHHcC
Confidence 5555543
No 37
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=96.50 E-value=3.9 Score=53.71 Aligned_cols=302 Identities=11% Similarity=0.081 Sum_probs=155.0
Q ss_pred hhHHHHHHHHHHHhcc-CcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHh
Q 039448 565 ESFMDLAGVLCSALHE-ENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARE 643 (1276)
Q Consensus 565 ~sF~~lA~~L~~~L~~-~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n 643 (1276)
+.++.+-+.|...|.+ +|.++...|.||.++++.......... ...+..|...
T Consensus 536 ~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~--------------------------~~~~~p~~~~ 589 (1049)
T 3m1i_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQ--------------------------PRESEPFIQT 589 (1049)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCC--------------------------TTCSSCHHHH
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccc--------------------------CCCCCcHHHH
Confidence 3445444444445555 689999999999999976421110000 0011245567
Q ss_pred HHHHHHHhhcCCCccccccHHHHHHHhhccCC-HHHHHHHHHHHHHHHHHHHHHhcc-cccccCCCcccccCCCCCCCch
Q 039448 644 LLSILSRIFLESAKDEGGCLQSTIGDFASIAD-KEIVTRLFKRTMHRLLEATQEAGK-TKSTRKSNSMQIDDSSNESSPD 721 (1276)
Q Consensus 644 ~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~-~~~l~~~f~~~~~kL~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 721 (1276)
++..|++++...+.+....+.++|...++..+ ++....++..++.-+.+.....-. ...+.+. . ..+
T Consensus 590 il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~----~d~ 658 (1049)
T 3m1i_C 590 IIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTL-------L----LDS 658 (1049)
T ss_dssp HHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGG-------G----GSH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhh-------h----cCH
Confidence 77777777776555555667789998887776 466666776655444333221100 0000000 0 001
Q ss_pred hhHhHHHHH-------HHHHc----CCCCh---hhHHHHHHHHhhhhc------------CCchhhhhHHHHHHHHHHhc
Q 039448 722 FMRARLFDL-------ALSLL----PGLNA---KEIDVLFVAIKPALQ------------DDEGLIQKKAYKVLSTILRK 775 (1276)
Q Consensus 722 ~~~~~llDL-------~~alv----~~l~~---~~~~~Lf~~~~~~l~------------~~d~~~QKKAYk~L~~i~~~ 775 (1276)
.....+..+ +.++- |+++. +.+ .+|......+. .+....++.....+.++++.
T Consensus 659 ~~~~~l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l-~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~l~~ll~~ 737 (1049)
T 3m1i_C 659 ETVKIIANIIKTNVAVCTSMGADFYPQLGHIYYNML-QLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVET 737 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHccCchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 111111222 12222 11111 111 23332111111 00112233344444444441
Q ss_pred ----Cc---chhhhhHHHHHHHHHhhCCCCCccc-hHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHh-----h
Q 039448 776 ----CD---GFLSSRLEELLGLMIEVLPSCHFSA-KRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILAL-----K 842 (1276)
Q Consensus 776 ----~~---~f~~~~~~el~~~L~~~~~~~~~~a-k~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~-----K 842 (1276)
.. ..+...+..+.+.+++...+..+.+ -..=|.|+..++..+... ...+++.++.-+.-|+ +
T Consensus 738 ~~~~~~~l~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~-----~~~~l~~i~~~l~~~~~~~i~~ 812 (1049)
T 3m1i_C 738 YISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHM-----IPQGVILILQSVFECTLDMINK 812 (1049)
T ss_dssp HHHHCSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGG-----CHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHHHHhc
Confidence 11 1122334555555555433221211 134677788887665422 2356677766666665 3
Q ss_pred --hhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhh
Q 039448 843 --EANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFS 909 (1276)
Q Consensus 843 --e~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~ 909 (1276)
+.....|...|.+|..+.+.+-..--+-++..+..++.-+..++....+....+++..+..|+-..+
T Consensus 813 ~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~ 881 (1049)
T 3m1i_C 813 DFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIE 881 (1049)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHH
T ss_pred chhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHH
Confidence 4568899999999999997543211001234466777777778888778888888888888776654
No 38
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=96.45 E-value=0.27 Score=59.31 Aligned_cols=334 Identities=12% Similarity=0.126 Sum_probs=175.5
Q ss_pred HHHHhhhhCCCCCCcch-hhhHHHHHHHHHHHhc--cCcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhh
Q 039448 547 YSLWSLLPSFCNYPVDT-AESFMDLAGVLCSALH--EENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMA 623 (1276)
Q Consensus 547 ~QlWsLLPgFC~~P~D~-~~sF~~lA~~L~~~L~--~~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~ 623 (1276)
..++.+|-.=-+-|.|. .+ .+.-+.|..+|. +.|+++...+.+|.+|...+..
T Consensus 79 ~~~rklls~e~~ppi~~ii~--~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e---------------------- 134 (510)
T 3ul1_B 79 QAARKLLSREKQPPIDNIIR--AGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE---------------------- 134 (510)
T ss_dssp HHHHHHHTCSSCCCHHHHHH--TTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHH----------------------
T ss_pred HHHHHHhcCCCCchHHHHHH--CCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHH----------------------
Confidence 46666665545566662 22 246678888886 3578999999999988533210
Q ss_pred cCChHHHHHhHHHHHHhhHhHHHHHHHhhcCCCccccccHHHHHHHhhccC-CHHHHHHHHHH--HHHHHHHHHHHhccc
Q 039448 624 HYTTKVATDNLNVLKSSARELLSILSRIFLESAKDEGGCLQSTIGDFASIA-DKEIVTRLFKR--TMHRLLEATQEAGKT 700 (1276)
Q Consensus 624 ~~s~~~A~~nl~~L~~~A~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~-~~~~l~~~f~~--~~~kL~~~~~~~~~~ 700 (1276)
|...+. ....+|.|..+......+.+ ..++.+...|+ +.+.....+.. ++..|........
T Consensus 135 ---------~~~~vv--~~GaIp~Lv~lL~s~~~~v~---e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~-- 198 (510)
T 3ul1_B 135 ---------QTKAVV--DGGAIPAFISLLASPHAHIS---EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPD-- 198 (510)
T ss_dssp ---------HHHHHH--HTTHHHHHHHHTTCSCHHHH---HHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSC--
T ss_pred ---------HHHHHH--HCCCHHHHHHHHcCCCHHHH---HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhcc--
Confidence 011111 23568888888765433322 24555555554 22333333321 2344443331100
Q ss_pred ccccCCCcccccCCCCCCCchhhHhHHHHHHHHHc----CCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcC
Q 039448 701 KSTRKSNSMQIDDSSNESSPDFMRARLFDLALSLL----PGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKC 776 (1276)
Q Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~llDL~~alv----~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~ 776 (1276)
.+ .......+... ..+..+. +..+...+..+...+...+.+.+..++..|...|..|+...
T Consensus 199 ----~~----------~~~~~~~~~a~-~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~ 263 (510)
T 3ul1_B 199 ----LS----------TLACGYLRNLT-WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP 263 (510)
T ss_dssp ----GG----------GSCHHHHHHHH-HHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC
T ss_pred ----ch----------hhhHHHHHHHH-HHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch
Confidence 00 00111122222 2222222 33333444555566666778889999999999999998754
Q ss_pred cchhhhhH-HHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHH-HHHHHHHHHhhhhhHHHHHHHHH
Q 039448 777 DGFLSSRL-EELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILS-SFLTEIILALKEANKRTRNRAYD 854 (1276)
Q Consensus 777 ~~f~~~~~-~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~-~~lpEiIL~~Ke~N~ktR~~A~~ 854 (1276)
......-. ..+...|++.+.+.....+.+-+++|..++ ...+. ....++. -.++-.+-.+++.+...|..|.-
T Consensus 264 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~----~~~~~-~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~ 338 (510)
T 3ul1_B 264 NERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIV----TGTDE-QTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338 (510)
T ss_dssp HHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHT----TSCHH-HHHHHHHTTGGGGCC-CTTCSSHHHHHHHHH
T ss_pred hhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhh----cCCHH-HHHHHhhccchHHHHHHhcCCCHHHHHHHHH
Confidence 32211100 012334444444444555555555555443 22221 1112221 12232333457788899999988
Q ss_pred HHHHHHHHhccCCCCCCcccHH--HHHHHHhhhccCCChhHHHHHHHHHHHHHHHhh-hhhHHH--HHhhhHHHHHhccC
Q 039448 855 VLVQIGRAFGDEENGGGKENLY--QFFNMVAGGLAGESPHMISAAVKGLARLAYEFS-DLVSNV--YKLLPSTFLLLQRK 929 (1276)
Q Consensus 855 lLv~mg~~~~~~~~~~~~~~l~--ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~-d~i~~~--~~ll~~v~llL~s~ 929 (1276)
.|-.|+..- ++....+. ..+..+...|...++.....+..||+.+..... +.+..+ ...++..+-+|.++
T Consensus 339 aL~nl~a~~-----~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~ 413 (510)
T 3ul1_B 339 TMSNITAGR-----QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAK 413 (510)
T ss_dssp HHHHHTTSC-----HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHHcCc-----HHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCC
Confidence 888775310 00000000 122223333444468889999999999887542 223322 24566778899999
Q ss_pred CHHHHHHHHHHHHHHH
Q 039448 930 NREIIKANLGLLKVLV 945 (1276)
Q Consensus 930 ~REIvKsaLgFvKV~v 945 (1276)
+.+|+..+|+.+.-++
T Consensus 414 d~~i~~~~L~aL~nil 429 (510)
T 3ul1_B 414 DTKIIQVILDAISNIF 429 (510)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999988765433
No 39
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.41 E-value=0.084 Score=56.56 Aligned_cols=191 Identities=16% Similarity=0.213 Sum_probs=118.4
Q ss_pred HHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhH-HHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHH
Q 039448 747 FVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRL-EELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQR 825 (1276)
Q Consensus 747 f~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~-~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~ 825 (1276)
|..+...|.+.|+.+|..|-+.|..++.........-+ ..+...|+..+.+.. ..-|..++..|- .+.....+ .
T Consensus 14 ~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~---~~v~~~a~~~L~-~l~~~~~~-~ 88 (252)
T 4db8_A 14 LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPN---EQILQEALWALS-NIASGGNE-Q 88 (252)
T ss_dssp HHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSC---HHHHHHHHHHHH-HHTTSCHH-H
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCC---HHHHHHHHHHHH-HHhcCCHH-H
Confidence 44555677788999999999999776653222111111 124455555555333 445555555543 44443322 2
Q ss_pred HhhhHHH-HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC-CCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHH
Q 039448 826 RSYILSS-FLTEIILALKEANKRTRNRAYDVLVQIGRAFGDE-ENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLAR 903 (1276)
Q Consensus 826 ~~~~i~~-~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~-~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsr 903 (1276)
...++.. .+|-++-.+++.|...|..|...|-.|+..-... ..--... .+..+..-|...++.+...++.+|+.
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~----~i~~L~~lL~~~~~~v~~~a~~~L~~ 164 (252)
T 4db8_A 89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG----ALPALVQLLSSPNEQILQEALWALSN 164 (252)
T ss_dssp HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT----HHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCC----CHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3334333 6777777889999999999999998886411000 0000011 23333444555578899999999999
Q ss_pred HHHHhhhhhHHH--HHhhhHHHHHhccCCHHHHHHHHHHHHHHHh
Q 039448 904 LAYEFSDLVSNV--YKLLPSTFLLLQRKNREIIKANLGLLKVLVA 946 (1276)
Q Consensus 904 Ll~ef~d~i~~~--~~ll~~v~llL~s~~REIvKsaLgFvKV~v~ 946 (1276)
|.....+....+ ...++.+.-+|.+.+.+|...+++.+.-++.
T Consensus 165 l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 165 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhc
Confidence 987554444332 3567777889999999999999988887664
No 40
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=96.16 E-value=0.14 Score=53.31 Aligned_cols=184 Identities=16% Similarity=0.178 Sum_probs=118.3
Q ss_pred HHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHH-HHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHH
Q 039448 746 LFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLE-ELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQ 824 (1276)
Q Consensus 746 Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~-el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~ 824 (1276)
.|..+...+.++|..+|..|...|..++.........-++ .....|++.+.+. ...-|..++..|- .+.....+
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~-~l~~~~~~- 87 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALS-NIASGGNE- 87 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHH-HHTTSCHH-
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHH-HHhcCCcH-
Confidence 3456667888999999999999999999644332211111 2445555555533 3345555655543 44433322
Q ss_pred HHhhhH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-------hccCCCCCCcccHHHHHHHHhhhccCCChhHHHH
Q 039448 825 RRSYIL-SSFLTEIILALKEANKRTRNRAYDVLVQIGRA-------FGDEENGGGKENLYQFFNMVAGGLAGESPHMISA 896 (1276)
Q Consensus 825 ~~~~~i-~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~-------~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSa 896 (1276)
....++ .-.+|-++-.+++.|...|..|...|-.|+.. +.+ ...+..++. -|...++.....
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~L~~----ll~~~~~~v~~~ 157 (210)
T 4db6_A 88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID------AGALPALVQ----LLSSPNEQILQE 157 (210)
T ss_dssp HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH------TTHHHHHHH----HTTCSCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH------cCcHHHHHH----HHcCCCHHHHHH
Confidence 122222 23677778788999999999999999888741 111 123333333 344457889999
Q ss_pred HHHHHHHHHHHhhhhhHHHH--HhhhHHHHHhccCCHHHHHHHHHHHHHH
Q 039448 897 AVKGLARLAYEFSDLVSNVY--KLLPSTFLLLQRKNREIIKANLGLLKVL 944 (1276)
Q Consensus 897 tI~ALsrLl~ef~d~i~~~~--~ll~~v~llL~s~~REIvKsaLgFvKV~ 944 (1276)
++.+|+.|.....+....+. ..++.+.-+|.+.+.+|.+.++..+.-+
T Consensus 158 a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 158 ALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207 (210)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 99999999876544443322 4577777899999999999998887654
No 41
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=96.15 E-value=0.22 Score=61.68 Aligned_cols=322 Identities=12% Similarity=0.132 Sum_probs=173.5
Q ss_pred HHHHHHHHHHhc-cCcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhHHH
Q 039448 568 MDLAGVLCSALH-EENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSARELLS 646 (1276)
Q Consensus 568 ~~lA~~L~~~L~-~~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~L~ 646 (1276)
..+.+.+...|. .+|.+|...+.++-.+...+.... .+|++
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--------------------------------------~~~~~ 182 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--------------------------------------EMFLP 182 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--------------------------------------GGGGG
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--------------------------------------HHHHH
Confidence 445555555555 468888888888888876542111 13333
Q ss_pred HHHHhhcCCCccccccHHHHHHHhhccCCHH-HHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchhhHh
Q 039448 647 ILSRIFLESAKDEGGCLQSTIGDFASIADKE-IVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDFMRA 725 (1276)
Q Consensus 647 vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~-~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 725 (1276)
.|..+.... +.+....++.++..|+... .....|.+++..|......-........ .. -.+.+.++...
T Consensus 183 ~l~~lL~D~---d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~---~~----~~~~~~~~~q~ 252 (618)
T 1w63_A 183 ATKNLLNEK---NHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPE---HD----VSGISDPFLQV 252 (618)
T ss_dssp GTTTSTTCC---CHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTT---TC----SSSSSCHHHHH
T ss_pred HHHHHhCCC---CHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCcc---cc----ccCCCCChHHH
Confidence 333333221 1233446677777666432 1233444443433332211000000000 00 01124567888
Q ss_pred HHHHHHHHHcCCCChhhHHHHHHHHhhhhc------CCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCC
Q 039448 726 RLFDLALSLLPGLNAKEIDVLFVAIKPALQ------DDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCH 799 (1276)
Q Consensus 726 ~llDL~~alv~~l~~~~~~~Lf~~~~~~l~------~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~ 799 (1276)
.+++++..+.+.-+. ....+++++..++. +.+..+...|=+.+-.+.. ..... . ...+.|..-+.+..
T Consensus 253 ~il~~L~~l~~~~~~-~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-~~~l~-~---~a~~~L~~~L~~~d 326 (618)
T 1w63_A 253 RILRLLRILGRNDDD-SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-ESGLR-V---LAINILGRFLLNND 326 (618)
T ss_dssp HHHHHHHHHTTTCHH-HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-CHHHH-H---HHHHHHHHHHTCSS
T ss_pred HHHHHHHHhCCCCHH-HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-CHHHH-H---HHHHHHHHHHhCCC
Confidence 899999988876332 22333333333322 2223344344333332211 11111 1 12222222233333
Q ss_pred ccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHH
Q 039448 800 FSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFF 879 (1276)
Q Consensus 800 ~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~ 879 (1276)
..-|..=|.+|..++.. .-+.+...++.++-|.++.+...|..|.++|..|++ +.++.+.+
T Consensus 327 ~~vr~~aL~~L~~i~~~---------~p~~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~----------~~nv~~iv 387 (618)
T 1w63_A 327 KNIRYVALTSLLKTVQT---------DHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFALVN----------GNNIRGMM 387 (618)
T ss_dssp TTTHHHHHHHHHHHHHH---------HHHHHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCC----------SSSTHHHH
T ss_pred CchHHHHHHHHHHHHhh---------CHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc----------cccHHHHH
Confidence 45555555666555432 124566677889999999999999999999999865 23345555
Q ss_pred HHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHH
Q 039448 880 NMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLAS 959 (1276)
Q Consensus 880 ~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~ 959 (1276)
.-+...+....+.+...+|.+|+++.-.|.... ...++.++-+|...+..|...++..++-.+..-|. .-..-++.
T Consensus 388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~---~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~-l~~~~v~~ 463 (618)
T 1w63_A 388 KELLYFLDSCEPEFKADCASGIFLAAEKYAPSK---RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVE-MHAYTVQR 463 (618)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCS-THHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH---HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChh-HHHHHHHH
Confidence 555555555679999999999999998885332 33345555566666666666677777777777662 22223555
Q ss_pred HHHHHhh
Q 039448 960 MVEGLLK 966 (1276)
Q Consensus 960 lv~~Ll~ 966 (1276)
++..|..
T Consensus 464 L~~~l~~ 470 (618)
T 1w63_A 464 LYKAILG 470 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6555543
No 42
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.09 E-value=0.32 Score=54.09 Aligned_cols=203 Identities=13% Similarity=0.071 Sum_probs=138.6
Q ss_pred HHHHHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHH
Q 039448 727 LFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHR 806 (1276)
Q Consensus 727 llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~R 806 (1276)
+-+|-..|.++++++-...+|+ +|...+=+|.-.|.+.++....-+...++-+.+-+.-.+-...+..-..=
T Consensus 36 v~~L~~~~~~~~~~~~~~~lfs--------~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~ 107 (266)
T 2of3_A 36 ISQLQTLLGNQAKVSLMSQLFH--------KDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKV 107 (266)
T ss_dssp HHHHHHHHHTTBCHHHHHHHTC--------SCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHhcC--------CCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3467778889999988877774 35555556777777766655555556666666644422222223333334
Q ss_pred HHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhc
Q 039448 807 LDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGL 886 (1276)
Q Consensus 807 L~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGL 886 (1276)
|..|.+++..+....+. -...-...+||=+|--+=|.+++.|+.+-++|..|...+ .-..+|.++.-|+
T Consensus 108 L~~L~~l~~~l~~~~y~-~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~----------~~~~v~~~l~~g~ 176 (266)
T 2of3_A 108 LELCKVIVELIRDTETP-MSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV----------GPLKMTPMLLDAL 176 (266)
T ss_dssp HHHHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH----------CHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC----------CHHHHHHHHHHHH
Confidence 55566666554332210 011224667777777777999999999999999998754 2446677778899
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhc
Q 039448 887 AGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKS 948 (1276)
Q Consensus 887 aG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~l 948 (1276)
.+.++-+....+..++.++-+|+-.-.....+.+.+.-++.+.+-+|-.+|+.-+-.+....
T Consensus 177 ksKN~R~R~e~l~~l~~li~~~G~~~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~ 238 (266)
T 2of3_A 177 KSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238 (266)
T ss_dssp GCSCHHHHHHHHHHHHHHHHHHCSGGGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999996542111122288999999999999999998877555444
No 43
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=95.96 E-value=0.28 Score=53.35 Aligned_cols=221 Identities=17% Similarity=0.163 Sum_probs=139.2
Q ss_pred HHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhh-hhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHH
Q 039448 746 LFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLS-SRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQ 824 (1276)
Q Consensus 746 Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~-~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~ 824 (1276)
.+.++...+.++|+.++=+|.-+|++++...++-+. ..++++...+++.+.+-.---.=.-++||..|+...|-++.
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~-- 111 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK-- 111 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH--
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH--
Confidence 344566778899999999999999999997544433 34555666666554322221122336799999877765532
Q ss_pred HHhhhHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHH
Q 039448 825 RRSYILSSFLTEIILAL-KEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLAR 903 (1276)
Q Consensus 825 ~~~~~i~~~lpEiIL~~-Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsr 903 (1276)
.| .-+.+++..+ |+.|.=-|.-|-+.|-.+ +-. .......+.++--+.+..++..+|++.+|.-
T Consensus 112 ---~y--~Kl~~aL~dlik~~~~il~~eaae~Lgkl--kv~--------~~~~~V~~~l~sLl~Skd~~vK~agl~~L~e 176 (265)
T 3b2a_A 112 ---TF--LKAAKTLVSLLESPDDMMRIETIDVLSKL--QPL--------EDSKLVRTYINELVVSPDLYTKVAGFCLFLN 176 (265)
T ss_dssp ---HH--HHHHHHHHHHTTSCCHHHHHHHHHHHHHC--CBS--------CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred ---HH--HHHHHHHHHHhcCCCchHHHHHHHHhCcC--Ccc--------cchHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 22 2344555555 789999999999888877 221 1133333334444478889999999999986
Q ss_pred HHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHh-hcChhHHHHH--HHHHHHHHhhcchhhHHHHHHHHH
Q 039448 904 LAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVA-KSHAEGLQIH--LASMVEGLLKWQDDTKNQFKSKIK 980 (1276)
Q Consensus 904 Ll~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~-~lp~~~l~~~--L~~lv~~Ll~ws~d~k~hfR~KVr 980 (1276)
+.- |++.-..+..+++.+--||++++.+|++=||--+=.... .++.+.+-.. +-+.+.+|--. ...-.||.|-|
T Consensus 177 ia~-~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~--~~~~~~~~ka~ 253 (265)
T 3b2a_A 177 MLN-SSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYR--EGAPIIRLKAK 253 (265)
T ss_dssp HGG-GCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGC--SSCHHHHHHHH
T ss_pred hhc-ccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHh--cCChhHHHHHH
Confidence 642 222222345667777788999999999999877654443 3444433222 23444444311 12346788888
Q ss_pred HHHHHH
Q 039448 981 LLLEML 986 (1276)
Q Consensus 981 ~IlerL 986 (1276)
.+.|++
T Consensus 254 ~v~~~l 259 (265)
T 3b2a_A 254 KVSDLI 259 (265)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 44
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=95.88 E-value=0.17 Score=63.01 Aligned_cols=277 Identities=16% Similarity=0.140 Sum_probs=160.3
Q ss_pred HHHHHHHHHHh--c-cCcccHHHHHHHHHHHHHHhhhhhcCCCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhHhH
Q 039448 568 MDLAGVLCSAL--H-EENDIRGIICSSLQNLIQQNKKTLEGKNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSAREL 644 (1276)
Q Consensus 568 ~~lA~~L~~~L--~-~~~~LR~~Ic~aLr~Li~~n~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~n~ 644 (1276)
..+.+.+-..| . .+|.+|...+-++..+...+...... ..|
T Consensus 145 ~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~------------------------------------~~~ 188 (621)
T 2vgl_A 145 EAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM------------------------------------GDW 188 (621)
T ss_dssp HHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC------------------------------------CSC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc------------------------------------hhH
Confidence 45556666666 4 47889999999999888764222110 146
Q ss_pred HHHHHHhhcCCCccccccHHHHHHHhhccCC--HHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCchh
Q 039448 645 LSILSRIFLESAKDEGGCLQSTIGDFASIAD--KEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPDF 722 (1276)
Q Consensus 645 L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~--~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1276)
++.|..+.....+ +....++.++..|+. ++....++..++..|..-...... + .+ +-.-.+.+.++
T Consensus 189 ~~~l~~lL~d~d~---~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~-~---~~-----~~~~~~~~~~w 256 (621)
T 2vgl_A 189 TSRVVHLLNDQHL---GVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSAST-D---LQ-----DYTYYFVPAPW 256 (621)
T ss_dssp HHHHHHHTTCSCH---HHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSS-S---CS-----TTEETTEESHH
T ss_pred HHHHHHHhCCCCc---cHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCC-C---cc-----chhhcCCCCch
Confidence 6666666654332 444566666666653 443334455555554443311000 0 00 00001123568
Q ss_pred hHhHHHHHHHHHcCCCChhhHHHHHHHHhhhhcCC--ch---hhhhH--HHHHHHHHHhcC---cchhhhhHHHHHHHHH
Q 039448 723 MRARLFDLALSLLPGLNAKEIDVLFVAIKPALQDD--EG---LIQKK--AYKVLSTILRKC---DGFLSSRLEELLGLMI 792 (1276)
Q Consensus 723 ~~~~llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~--d~---~~QKK--AYk~L~~i~~~~---~~f~~~~~~el~~~L~ 792 (1276)
....+++++..+.|.-+.+..+.+++++..++... .+ .+|.+ ++-++.+-+..- .. -...+....+.|.
T Consensus 257 ~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~~~~~~L~ 335 (621)
T 2vgl_A 257 LSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLVRACNQLG 335 (621)
T ss_dssp HHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHH
Confidence 88999999988777555566666777666555321 01 44543 345555543310 00 0011222233333
Q ss_pred hhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHhccCCCCCC
Q 039448 793 EVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALK-EANKRTRNRAYDVLVQIGRAFGDEENGGG 871 (1276)
Q Consensus 793 ~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~K-e~N~ktR~~A~~lLv~mg~~~~~~~~~~~ 871 (1276)
.-+.+ +..--|..+|..+........+ .+++....+.++-|++ +.+.-.|..|.++|..|++
T Consensus 336 ~~L~~---~~~niry~aL~~l~~l~~~~~~----~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---------- 398 (621)
T 2vgl_A 336 QFLQH---RETNLRYLALESMCTLASSEFS----HEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCD---------- 398 (621)
T ss_dssp HHSSC---SCHHHHHHHHHHHHHHTTCTTT----HHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC----------
T ss_pred HHhcC---CCcchHHHHHHHHHHHHhccCc----HHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC----------
Confidence 33332 2334455555555432222211 2466777788888999 9999999999999999875
Q ss_pred cccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhh
Q 039448 872 KENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSD 910 (1276)
Q Consensus 872 ~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d 910 (1276)
+.++.+.+.-+...+....+.+...+|.+++++...|..
T Consensus 399 ~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~ 437 (621)
T 2vgl_A 399 RSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAV 437 (621)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCS
T ss_pred hhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCC
Confidence 356777777777777777899999999999999988843
No 45
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=95.52 E-value=9.8 Score=49.89 Aligned_cols=159 Identities=11% Similarity=0.111 Sum_probs=92.5
Q ss_pred HHhhHhHHHHHHHhhcCCCccc-cccHHHHHHHhhccCC---HHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccC
Q 039448 638 KSSARELLSILSRIFLESAKDE-GGCLQSTIGDFASIAD---KEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDD 713 (1276)
Q Consensus 638 ~~~A~n~L~vLfNvy~~~~~~~-~~~~~~tI~ay~sI~~---~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~ 713 (1276)
..|-..++..++..|....+.. ...++.++...+.-.. ...+..+|..+++...+...+
T Consensus 750 ~~~~~~~l~~ll~~~~~~~~~~~~~~~l~l~~~ii~~~~~~~~~~l~~i~~~l~~~~~~~i~~----------------- 812 (1049)
T 3m1i_C 750 KVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINK----------------- 812 (1049)
T ss_dssp HHTHHHHHHHHHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSS-----------------
T ss_pred HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhc-----------------
Confidence 3444566666777776532221 1334444333332111 234455555554444433310
Q ss_pred CCCCCCchhhHhHHHHHHHHHcCC-------CChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcC----c-----
Q 039448 714 SSNESSPDFMRARLFDLALSLLPG-------LNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKC----D----- 777 (1276)
Q Consensus 714 ~~~~~~~~~~~~~llDL~~alv~~-------l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~----~----- 777 (1276)
+....+..+..++.++..++.+ ++...+..+++.+.-.+..+++.+-|-|-++|..++... .
T Consensus 813 --~~~~~pd~~~~~f~ll~~i~~~~~~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~ 890 (1049)
T 3m1i_C 813 --DFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFAN 890 (1049)
T ss_dssp --CSSSSHHHHHHHHHHHHHHHHHCTHHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHH
T ss_pred --chhhCHHHHHHHHHHHHHHHHhCHHHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHHH
Confidence 0002346788888888887754 245556777777777788899999999999999988721 1
Q ss_pred chhhhhHHHHHHHHHh-hCCCCCccchHHHHHHHHHHHH
Q 039448 778 GFLSSRLEELLGLMIE-VLPSCHFSAKRHRLDCLYFIIA 815 (1276)
Q Consensus 778 ~f~~~~~~el~~~L~~-~~~~~~~~ak~~RL~cL~~lv~ 815 (1276)
.|...+...|...++. .+++++.+.-..--.+|+.++.
T Consensus 891 ~f~~~~~~~l~~~~~~~l~~~~h~s~~~~~~~~l~~l~~ 929 (1049)
T 3m1i_C 891 EFHKNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLIS 929 (1049)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcchHhhhHHHHHHHHHHHHH
Confidence 2454454454443333 4556677777777777777764
No 46
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=95.50 E-value=10 Score=49.90 Aligned_cols=177 Identities=11% Similarity=0.107 Sum_probs=102.7
Q ss_pred HhHHHHHHHhhcCCC---ccc---cccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCC
Q 039448 642 RELLSILSRIFLESA---KDE---GGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSS 715 (1276)
Q Consensus 642 ~n~L~vLfNvy~~~~---~~~---~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1276)
...++++++.+.+.. ..+ +....=++++-+.-.+++....+...++.-|........ ..+
T Consensus 446 ~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~-----~~d--------- 511 (1023)
T 4hat_C 446 IDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKR-----GKD--------- 511 (1023)
T ss_dssp HHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCC-----SHH---------
T ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccc-----cCc---------
Confidence 456666666654311 111 222223455555545666667888888887776552100 000
Q ss_pred CCCCchhhHhHHHHHHHHHcCCC--ChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchh--------hhhHH
Q 039448 716 NESSPDFMRARLFDLALSLLPGL--NAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFL--------SSRLE 785 (1276)
Q Consensus 716 ~~~~~~~~~~~llDL~~alv~~l--~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~--------~~~~~ 785 (1276)
+..-.+.+.+.++.....++ ..+.+..+.+.+...+.++.+.+|--|-..|..||+.|...+ ..+++
T Consensus 512 ---~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~ 588 (1023)
T 4hat_C 512 ---NKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQ 588 (1023)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHH
T ss_pred ---chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHH
Confidence 11123445555554444443 234566666666666666678999999999999999887654 34788
Q ss_pred HHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHH
Q 039448 786 ELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEII 838 (1276)
Q Consensus 786 el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiI 838 (1276)
+|.+.+...........+..=..++..+|..++... ...+++..+++=.+
T Consensus 589 ~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~---~~~~~l~~L~~~~~ 638 (1023)
T 4hat_C 589 TIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVA---ERNRLLSDLMQLPN 638 (1023)
T ss_dssp HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHH---HHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHh---hHHHHHHHHHHhHH
Confidence 888888887776555555555566777776654321 23455555554333
No 47
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=95.32 E-value=0.73 Score=55.69 Aligned_cols=276 Identities=14% Similarity=0.162 Sum_probs=149.2
Q ss_pred HHHHHHHHhhhcC---CCchhHHHHHHHHHHHHhccCC-CCCcchhhHHHHHHhhccCCchhHHHHHHHHHHHHHhccCC
Q 039448 112 LTDLVVRVVRLSS---VTAGAVASGLTSLSRLLTGRGR-VNWSDVSQLYGVVLAFMTDSRLKVRRQSHLCVREILLSLQG 187 (1276)
Q Consensus 112 ~~~~l~~~l~~~~---~~~~~lRs~i~CL~~LL~aqd~-~~W~~~~~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~ 187 (1276)
++..|+.+|..+. ....++|.+..||..+.+..+. ..|..+..++..|..+.-+..|.|+..|-.++..+......
T Consensus 205 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~ 284 (529)
T 3tpo_A 205 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE 284 (529)
T ss_dssp CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH
T ss_pred CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhh
Confidence 3455666666543 2345789999999999887654 45555667888888888899999999999999887753110
Q ss_pred CCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhccCCCchhHHH-----HHHHHHHhhccCchh
Q 039448 188 TLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECLPLMSTKYTAV-----ILKYFKTLLELRQPL 262 (1276)
Q Consensus 188 ~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~~~~~~~~~~-----i~~~ll~Ll~l~n~~ 262 (1276)
. ........+...+.+.+. + ........++..|..++.. +...... +.+.+..|+.-.++-
T Consensus 285 ~-~~~v~~~g~i~~Lv~lL~----~--------~~~~v~~~a~~aL~nl~~~-~~~~~~~i~~~g~l~~L~~LL~~~~~~ 350 (529)
T 3tpo_A 285 R-IEMVVKKGVVPQLVKLLG----A--------TELPIVTPALRAIGNIVTG-TDEQTQKVIDAGALAVFPSLLTNPKTN 350 (529)
T ss_dssp H-HHHHHTTTCHHHHHHHHT----C--------SCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTGGGGHHHHTTCSSHH
T ss_pred h-HHHHHhccchHHHHHHhc----C--------CChhHHHHHHHHHHHHHcc-chHHHHHHhhcccHHHHHHHHcCCCHH
Confidence 0 000000111112222221 0 1223344555555555543 2222222 334677888888999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCH----HHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhc-CHhHHhhhh-hH
Q 039448 263 VTRRVTDALNVICLHPTLEVSA----EALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSI-NREICSTKL-PI 336 (1276)
Q Consensus 263 lt~~~~~~~~~lf~~~~~~l~~----~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~-~~~~c~~~L-P~ 336 (1276)
+...+.-++..|..+....... ..+.-++..|.. +....+...+|. +.+++.. +++.+..-+ ..
T Consensus 351 i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~---~~~~v~~~A~~a-------L~nl~~~~~~~~~~~l~~~g 420 (529)
T 3tpo_A 351 IQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK---ADFKTQKAAAWA-------ITNYTSGGTVEQIVYLVHCG 420 (529)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS---SCHHHHHHHHHH-------HHHHHHHSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC---CCHHHHHHHHHH-------HHHHHcCCCHHHHHHHHHCc
Confidence 9999999999988765422111 112233333322 111222222222 2333322 333221110 11
Q ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcCCCChHHHHH--HHHHHHhhhhcchhhhH
Q 039448 337 VFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDARKSGPTVIEK--ICATVESLLDYHYSAVW 414 (1276)
Q Consensus 337 ~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~~~~~~~i~~--i~~~~~~~L~~~y~~aw 414 (1276)
++..++++|.+..++++..+.++|.+|+.-.=. .-.. ..+ ...|+. ....|+.+.+..-....
T Consensus 421 ~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~--~~~~--~~~-----------~~~iee~ggl~~ie~Lq~~~n~~i~ 485 (529)
T 3tpo_A 421 IIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK--LGET--EKL-----------SIMIEECGGLDKIEALQRHENESVY 485 (529)
T ss_dssp CHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHT--TTCH--HHH-----------HHHHHHTTCHHHHTGGGGCSSHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHh--ccCh--HHH-----------HHHHHHCCcHHHHHHHHcCCCHHHH
Confidence 345567889999999999999999988753210 0000 000 011111 12345666665555566
Q ss_pred HHHHHHHHHHHH
Q 039448 415 DMAFQIVSTMFD 426 (1276)
Q Consensus 415 ~~vL~vl~~lf~ 426 (1276)
...+.++...|.
T Consensus 486 ~~A~~iie~yf~ 497 (529)
T 3tpo_A 486 KASLNLIEKYFS 497 (529)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHCC
Confidence 777777777774
No 48
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.96 E-value=1.5 Score=57.03 Aligned_cols=220 Identities=12% Similarity=0.115 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHhccCCC--CCcchhhHHHHHHhhccCCchhHHHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHH
Q 039448 131 ASGLTSLSRLLTGRGRV--NWSDVSQLYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFLLL 208 (1276)
Q Consensus 131 Rs~i~CL~~LL~aqd~~--~W~~~~~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~ 208 (1276)
-+++.-++.|-..+... .-.+.-+.+..+|...-|..+.||++||.|+..|.+.+++- |...+-..+..++..
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~-----a~~~~~~~~~~~~~~ 144 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV-----AIKALLPHLTNAIVE 144 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG-----GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHHHHhcc
Confidence 34444455554444332 11223346788889999999999999999999999865332 222222333344421
Q ss_pred hCCCCCCcCCCCc--chhHHHHHHHHHHhhccCCCchhHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCCC-CCCC--
Q 039448 209 AGGSNTSADEKPK--GAQEVLYVLDALKECLPLMSTKYTAVILKYFKTLLELRQPLVTRRVTDALNVICLHPT-LEVS-- 283 (1276)
Q Consensus 209 ~~~s~~~~~~~~~--~~~~~lh~L~lLk~~l~~~~~~~~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~-~~l~-- 283 (1276)
+.| .-..+|.+++-|-...|.-=......+.+.+...|.=.-+=|..++.+++..+|.--. .++.
T Consensus 145 ----------~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~ 214 (986)
T 2iw3_A 145 ----------TNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERF 214 (986)
T ss_dssp ----------CCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGG
T ss_pred ----------ccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhh
Confidence 112 3345677777666655543344455566666666666778888999999999885332 1111
Q ss_pred ----------HHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHH---------------HHHhc--CHhHHhhhhhH
Q 039448 284 ----------AEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMI---------------KIYSI--NREICSTKLPI 336 (1276)
Q Consensus 284 ----------~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~---------------~l~~~--~~~~c~~~LP~ 336 (1276)
++.+.+.|..|..-.--..-..++|+.++-+|.+|+. +++++ ||..+..-||.
T Consensus 215 ~~~~~~~~~~p~~~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~ 294 (986)
T 2iw3_A 215 IPSLIQCIADPTEVPETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGK 294 (986)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTT
T ss_pred HHHHHHHhcChhhhHHHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhh
Confidence 2345566666644333334456778888888888853 55555 89999999999
Q ss_pred HHHHHHHHhc-CCchhHHHHHHHHHHHHHH
Q 039448 337 VFNALKDILA-SEHEEAIFAATEALKNLIN 365 (1276)
Q Consensus 337 ~f~~~~~~l~-S~~~~v~~~as~~L~~li~ 365 (1276)
++..+-.... -..||+|.-|.+|+..|..
T Consensus 295 l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~ 324 (986)
T 2iw3_A 295 LLPGLKSNFATIADPEAREVTLRALKTLRR 324 (986)
T ss_dssp THHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence 9998876554 4789999999999987754
No 49
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=94.68 E-value=1.4 Score=52.92 Aligned_cols=201 Identities=11% Similarity=0.064 Sum_probs=113.4
Q ss_pred HHHHHHHHhhhcC---CCchhHHHHHHHHHHHHhccCC-CCCcchhhHHHHHHhhccCCchhHHHHHHHHHHHHHhccCC
Q 039448 112 LTDLVVRVVRLSS---VTAGAVASGLTSLSRLLTGRGR-VNWSDVSQLYGVVLAFMTDSRLKVRRQSHLCVREILLSLQG 187 (1276)
Q Consensus 112 ~~~~l~~~l~~~~---~~~~~lRs~i~CL~~LL~aqd~-~~W~~~~~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~ 187 (1276)
.+..|+.+|..++ ....++|.+..||..+.+..+. ..|..+..++..|..+.-+..|.||..|-.++..+....
T Consensus 186 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~-- 263 (510)
T 3ul1_B 186 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP-- 263 (510)
T ss_dssp CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--
T ss_pred ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch--
Confidence 3455667776553 2345788999999998887654 455556667778888888899999999888887765321
Q ss_pred CCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhccCCCchhHHHHHHHHHHhhccCchhHHHHH
Q 039448 188 TLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECLPLMSTKYTAVILKYFKTLLELRQPLVTRRV 267 (1276)
Q Consensus 188 ~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~~~~~~~~~~i~~~ll~Ll~l~n~~lt~~~ 267 (1276)
. + ..+.+.. . -+++.+..++.-.++-+...+
T Consensus 264 ------~-~-----~~~~i~~---------~----------------------------g~i~~Lv~lL~~~~~~v~~~a 294 (510)
T 3ul1_B 264 ------N-E-----RIEMVVK---------K----------------------------GVVPQLVKLLGATELPIVTPA 294 (510)
T ss_dssp ------H-H-----HHHHHHT---------T----------------------------TCHHHHHHHHTCSCHHHHHHH
T ss_pred ------h-h-----hHHHHHh---------c----------------------------ccchhhhhhhcCCChhhhhHH
Confidence 0 0 0011100 0 012334445556667777777
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCHhHHhhhh-hHHHHHHHHHhc
Q 039448 268 TDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINREICSTKL-PIVFNALKDILA 346 (1276)
Q Consensus 268 ~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~~~c~~~L-P~~f~~~~~~l~ 346 (1276)
..++..++.........-.-.+++..|.....+.+.....-+.| ++.+++..++.....-. ..++..+..+|.
T Consensus 295 l~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~------aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~ 368 (510)
T 3ul1_B 295 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW------TMSNITAGRQDQIQQVVNHGLVPFLVGVLS 368 (510)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHH------HHHHHTTSCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHH------HHHHHHcCcHHHHHHHHhcCCHHHHHHHHc
Confidence 77777776443211000001123333333333222211111222 33555554543222111 234566778889
Q ss_pred CCchhHHHHHHHHHHHHHHHhhc
Q 039448 347 SEHEEAIFAATEALKNLINACID 369 (1276)
Q Consensus 347 S~~~~v~~~as~~L~~li~~ci~ 369 (1276)
++..+++..|..+|.++...|-.
T Consensus 369 ~~~~~v~~~Aa~aL~Nl~~~~~~ 391 (510)
T 3ul1_B 369 KADFKTQKEAAWAITNYTSGGTV 391 (510)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCCH
T ss_pred CCCHHHHHHHHHHHHHHHccCCH
Confidence 99999999999999998876543
No 50
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.16 E-value=1.6 Score=45.99 Aligned_cols=190 Identities=13% Similarity=0.157 Sum_probs=116.2
Q ss_pred HhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHH-HHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhh
Q 039448 750 IKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLE-ELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSY 828 (1276)
Q Consensus 750 ~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~-el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~ 828 (1276)
+...+.+.+..+|..|..+|..++.........-.+ .....|+..+.+ +...-|..++..|- .++....+ ....
T Consensus 49 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~---~~~~v~~~a~~~L~-~l~~~~~~-~~~~ 123 (252)
T 4hxt_A 49 LVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS---TDSEVQKEAARALA-NIASGPDE-AIKA 123 (252)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC---SSHHHHHHHHHHHH-HHTTSCHH-HHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcC---CCHHHHHHHHHHHH-HHHcCCHH-HHHH
Confidence 345566778899999999999999753332111111 134444554443 23455555555543 44433322 1222
Q ss_pred hHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccH--HHHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 039448 829 ILS-SFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENL--YQFFNMVAGGLAGESPHMISAAVKGLARLA 905 (1276)
Q Consensus 829 ~i~-~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l--~ef~~mV~aGLaG~tphMiSatI~ALsrLl 905 (1276)
++. ..++-++-.+++.+...|..|...|-.|+....+ ....+ ...+..+..-|...++.....++.+|+.|.
T Consensus 124 ~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~-----~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 198 (252)
T 4hxt_A 124 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE-----AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 198 (252)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH-----HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHH-----HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 332 3677777788999999999999999888651100 00000 012333444455567889999999999998
Q ss_pred HHhhhhhHHH--HHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcC
Q 039448 906 YEFSDLVSNV--YKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSH 949 (1276)
Q Consensus 906 ~ef~d~i~~~--~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp 949 (1276)
....+....+ ...++.+.-+|.+.+.++.+.+++.+.-+...-+
T Consensus 199 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 199 SGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp TSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred cCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 7544444332 2456777788999999999999888876665433
No 51
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=93.68 E-value=22 Score=45.52 Aligned_cols=171 Identities=10% Similarity=0.085 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHHhcCcc----hhhh-hHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhH--HHHH
Q 039448 762 QKKAYKVLSTILRKCDG----FLSS-RLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYIL--SSFL 834 (1276)
Q Consensus 762 QKKAYk~L~~i~~~~~~----f~~~-~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i--~~~l 834 (1276)
|.-|-..|..|+...++ .+.. -+..|.++|.. .....++.=+.||..|+. .++ ....|+ ...+
T Consensus 598 ~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s----~~~~Vq~~A~~~L~NLa~----~~~--~~~~~v~~~g~l 667 (810)
T 3now_A 598 NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLME----DHLYLTRAAAQCLCNLVM----SED--VIKMFEGNNDRV 667 (810)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS----CCTTHHHHHHHHHHHHTT----SHH--HHHHHHSSSSHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC----CCHHHHHHHHHHHHHHhC----ChH--HHHHHHhccCcH
Confidence 34566667666653221 1111 23445555443 345567777777776642 121 234444 2466
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC--CCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhh
Q 039448 835 TEIILALKEANKRTRNRAYDVLVQIGRAFGDE--ENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLV 912 (1276)
Q Consensus 835 pEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~--~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i 912 (1276)
+=.|-.+...+..+|..|-..|-.+....... .--+....+..++.++ ...++..+-.++.||+.++..-.+..
T Consensus 668 ~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL----~s~d~~vq~~A~~aL~NL~~~s~e~~ 743 (810)
T 3now_A 668 KFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI----ANPSPAVQHRGIVIILNMINAGEEIA 743 (810)
T ss_dssp HHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHH----TCSSHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHH----CCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 76666778888999999998888886521100 0000023344444444 44579999999999999987433333
Q ss_pred HHHH--HhhhHHHHHhcc---CCHHHHHHHHHHHHHHHh
Q 039448 913 SNVY--KLLPSTFLLLQR---KNREIIKANLGLLKVLVA 946 (1276)
Q Consensus 913 ~~~~--~ll~~v~llL~s---~~REIvKsaLgFvKV~v~ 946 (1276)
..+. ..++.++-+|+. ++.+|+..|+.-++.++.
T Consensus 744 ~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~ 782 (810)
T 3now_A 744 KKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782 (810)
T ss_dssp HHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence 3322 446666667654 478899888877766553
No 52
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.44 E-value=1.2 Score=47.36 Aligned_cols=184 Identities=16% Similarity=0.162 Sum_probs=111.9
Q ss_pred HhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHH-HHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhh
Q 039448 750 IKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLE-ELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSY 828 (1276)
Q Consensus 750 ~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~-el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~ 828 (1276)
+...+.+.+..+|..|..+|..++.........-++ .....|+..+.+ +...-|-.|+..|- .+...... ....
T Consensus 59 L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~---~~~~v~~~a~~~L~-~l~~~~~~-~~~~ 133 (252)
T 4db8_A 59 LVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS---PNEQILQEALWALS-NIASGGNE-QIQA 133 (252)
T ss_dssp HHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGC---SCHHHHHHHHHHHH-HHTTSCHH-HHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcC---CCHHHHHHHHHHHH-HhhcCCch-HHHH
Confidence 345667778899999999999999744332221111 144455555543 23455556665543 44444332 1123
Q ss_pred hHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC-CCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHH
Q 039448 829 ILS-SFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEE-NGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAY 906 (1276)
Q Consensus 829 ~i~-~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~-~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ 906 (1276)
++. ..+|-++-.+++.+...|..|...|..++..-.+.. .--....+..++ .-|...++.....++.+|+.|..
T Consensus 134 ~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~----~ll~~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 134 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV----QLLSSPNEQILQEALWALSNIAS 209 (252)
T ss_dssp HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHH----HGGGCSSHHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHH----HHHCCCCHHHHHHHHHHHHHHhc
Confidence 333 367777777899999999999999988875110000 000012233333 34445578899999999999985
Q ss_pred HhhhhhHHHH--HhhhHHHHHhccCCHHHHHHHHHHHH
Q 039448 907 EFSDLVSNVY--KLLPSTFLLLQRKNREIIKANLGLLK 942 (1276)
Q Consensus 907 ef~d~i~~~~--~ll~~v~llL~s~~REIvKsaLgFvK 942 (1276)
...+....+. ..++.+.-+|.+.+.+|.+.|...+.
T Consensus 210 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~ 247 (252)
T 4db8_A 210 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE 247 (252)
T ss_dssp SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4444333322 45677777889999999888877654
No 53
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=93.20 E-value=0.72 Score=50.88 Aligned_cols=190 Identities=12% Similarity=0.093 Sum_probs=118.0
Q ss_pred CCccchHHHHHHHHHHHHhccCCChHH---HHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccc
Q 039448 798 CHFSAKRHRLDCLYFIIAHVSKDDSEQ---RRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKEN 874 (1276)
Q Consensus 798 ~~~~ak~~RL~cL~~lv~~l~~~~~~~---~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~ 874 (1276)
+.+.-++.|+..+..+...+....... +....+..+++-+--+++|.|..+-..|+++|..+...+.... .....
T Consensus 18 l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~--~~~~~ 95 (278)
T 4ffb_C 18 LTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS--LKNAH 95 (278)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC-----CCHHH
T ss_pred cccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh--cccch
Confidence 557789999999988876553322110 0111122223333345689999999999999999888664321 11122
Q ss_pred HHHHHHHHhh-----hccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcC
Q 039448 875 LYQFFNMVAG-----GLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSH 949 (1276)
Q Consensus 875 l~ef~~mV~a-----GLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp 949 (1276)
...++..++. +|+..-+.+...++.++..+++.... ...+++.++-.|.++|..|+-+++.|+.-++..+.
T Consensus 96 ~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~----~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg 171 (278)
T 4ffb_C 96 NITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS----ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFG 171 (278)
T ss_dssp HHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS----SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhC
Confidence 2233333333 35555577888888888766643221 12233444567899999999999999999988755
Q ss_pred hhH--HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCHH
Q 039448 950 AEG--LQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLD 993 (1276)
Q Consensus 950 ~~~--l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~e 993 (1276)
... ..+.++.+++.+...-.+.-.--|..-..++--|.|-+|..
T Consensus 172 ~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~ 217 (278)
T 4ffb_C 172 LTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN 217 (278)
T ss_dssp TTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred CCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence 433 35566777777666666666677888888888889999954
No 54
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=93.20 E-value=25 Score=44.88 Aligned_cols=193 Identities=11% Similarity=0.098 Sum_probs=113.2
Q ss_pred ChhhHHHHHH--HH---hhhhcCCchhhhhHHHHHHHHHHhcCc-c--hhhhhHHHHHHHHHhhCCCCCccchHHHHHHH
Q 039448 739 NAKEIDVLFV--AI---KPALQDDEGLIQKKAYKVLSTILRKCD-G--FLSSRLEELLGLMIEVLPSCHFSAKRHRLDCL 810 (1276)
Q Consensus 739 ~~~~~~~Lf~--~~---~~~l~~~d~~~QKKAYk~L~~i~~~~~-~--f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL 810 (1276)
+.+....+.+ .+ .+.+.+.+...|+.|-..|..||.... . |-.....+...-|++.+.+- +....+..++
T Consensus 525 d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~--~~~l~~~eAl 602 (810)
T 3now_A 525 LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD--CTALENFESL 602 (810)
T ss_dssp SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT--SCHHHHHHHH
T ss_pred CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC--CcHHHHHHHH
Confidence 3445555554 22 334566777889999999999997533 2 21122233445555555421 1222233334
Q ss_pred HHHHHhccCCChHHHHhhhHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHH------HhccCCCCCCcccHHHHHHHHh
Q 039448 811 YFIIAHVSKDDSEQRRSYILS-SFLTEIILALKEANKRTRNRAYDVLVQIGR------AFGDEENGGGKENLYQFFNMVA 883 (1276)
Q Consensus 811 ~~lv~~l~~~~~~~~~~~~i~-~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~------~~~~~~~~~~~~~l~ef~~mV~ 883 (1276)
..| ..+....++ ....++. -.+|-++-...+.|...|+.|..+|-.|.. .+.+ ....+.- +.
T Consensus 603 ~AL-~NLa~~~d~-~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~-----~~g~l~~----Lv 671 (810)
T 3now_A 603 MAL-TNLASMNES-VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEG-----NNDRVKF----LA 671 (810)
T ss_dssp HHH-HHHTTSCHH-HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHS-----SSSHHHH----HH
T ss_pred HHH-HHHhcCCHH-HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHh-----ccCcHHH----HH
Confidence 333 233333322 2233343 356667767788899999999999988764 1110 0122332 22
Q ss_pred hhccCCChhHHHHHHHHHHHHHHHhhhhhHHHH---HhhhHHHHHhccCCHHHHHHHHHHHHHH
Q 039448 884 GGLAGESPHMISAAVKGLARLAYEFSDLVSNVY---KLLPSTFLLLQRKNREIIKANLGLLKVL 944 (1276)
Q Consensus 884 aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~---~ll~~v~llL~s~~REIvKsaLgFvKV~ 944 (1276)
.-+....+....++..||+.|.-...+.+..+. ..++.++-||.+.+-+|.+.++.-+-=+
T Consensus 672 ~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL 735 (810)
T 3now_A 672 LLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNM 735 (810)
T ss_dssp HGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 233445577888899999999876555555433 3677777888999999888776655433
No 55
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=93.15 E-value=22 Score=43.97 Aligned_cols=203 Identities=11% Similarity=0.087 Sum_probs=117.8
Q ss_pred hhhHhHHHHHHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCc
Q 039448 721 DFMRARLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHF 800 (1276)
Q Consensus 721 ~~~~~~llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~ 800 (1276)
...+..-+|++..|+ ++++++.+.+.+..++.+.|......+-+-+..+++....-....++-+.+++....+.+..
T Consensus 383 ~~Ir~~aL~lL~~l~---~~~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ 459 (621)
T 2vgl_A 383 VSVRQRAVDLLYAMC---DRSNAQQIVAEMLSYLETADYSIREEIVLKVAILAEKYAVDYTWYVDTILNLIRIAGDYVSE 459 (621)
T ss_dssp HHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCS
T ss_pred HhHHHHHHHHHHHHc---ChhhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcccchH
Confidence 357778899999986 67889999988888888888888888877777777642222333455555555544332222
Q ss_pred cchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHhccCCCCCCcccHHHH
Q 039448 801 SAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEAN--KRTRNRAYDVLVQIGRAFGDEENGGGKENLYQF 878 (1276)
Q Consensus 801 ~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N--~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef 878 (1276)
.. ...+..++..-+.. ..++..-+-|.+ .+.. +..-..|.=+|=+.|+...+. ....-.++
T Consensus 460 ev----~~~l~~ii~~~~~~------~~~~~~~l~~~l---~~~~~~~~li~~~~wilGEy~~~~~~~----~~~~p~~~ 522 (621)
T 2vgl_A 460 EV----WYRVIQIVINRDDV------QGYAAKTVFEAL---QAPACHENLVKVGGYILGEFGNLIAGD----PRSSPLIQ 522 (621)
T ss_dssp HH----HHHHHHHHGGGCSC------HHHHHHHHHHHH---TSSSCCHHHHHHHHHHHHHHTHHHHSS----TTSCHHHH
T ss_pred HH----HHHHHHHHhCChhH------HHHHHHHHHHHH---cCccchHHHHHHHHHHhcchHHHhccc----CCCCHHHH
Confidence 11 22333344332211 122222222332 3332 111122223444444444331 11223577
Q ss_pred HHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHH
Q 039448 879 FNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVL 944 (1276)
Q Consensus 879 ~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~ 944 (1276)
+..+...+...++......++|+.++.-.+.+..+.+..++.. +..+.+.+-||-.=|.-|.+.+
T Consensus 523 l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~~~~~i~~~l~~-~~~~~~~d~evrdRA~~y~~Ll 587 (621)
T 2vgl_A 523 FNLLHSKFHLCSVPTRALLLSTYIKFVNLFPEVKATIQDVLRS-DSQLKNADVELQQRAVEYLRLS 587 (621)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHSS-HHHHSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHHHHHHChHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHH
Confidence 8888888888889999999999999977776544333333322 1112388899887777777664
No 56
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=92.71 E-value=15 Score=41.06 Aligned_cols=207 Identities=12% Similarity=0.077 Sum_probs=115.8
Q ss_pred HHHHHHHcCCCChhhHHHHHHHHhhhhcCCc------------hhhhhHHHHHHHHHHhcCc---chhhhhHHHHHHHHH
Q 039448 728 FDLALSLLPGLNAKEIDVLFVAIKPALQDDE------------GLIQKKAYKVLSTILRKCD---GFLSSRLEELLGLMI 792 (1276)
Q Consensus 728 lDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d------------~~~QKKAYk~L~~i~~~~~---~f~~~~~~el~~~L~ 792 (1276)
+|.+..+..+.+ +. ..+++.+..+|.+++ ......|...|..+++..+ .|+.. + ....|+
T Consensus 13 ~~~~~~~~~~~~-d~-~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~--G-~l~~Lv 87 (296)
T 1xqr_A 13 LVPRGSHMRGQR-GE-VEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQL--S-GMHLLV 87 (296)
T ss_dssp -------CCSCH-HH-HHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHT--T-HHHHHH
T ss_pred hHHHHHHHcCCC-CH-HHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHc--C-CHHHHH
Confidence 566666666643 22 234455556665541 1234589999999998422 12221 1 234455
Q ss_pred h-hCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHH-HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHhccCCCC
Q 039448 793 E-VLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILS-SFLTEIILALK-EANKRTRNRAYDVLVQIGRAFGDEENG 869 (1276)
Q Consensus 793 ~-~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~-~~lpEiIL~~K-e~N~ktR~~A~~lLv~mg~~~~~~~~~ 869 (1276)
. .+.+....-|..=..||..++ ...+. ....++. -.||=.+-.++ +.+...|..|.-.|-.|++-.......
T Consensus 88 ~~lL~s~~~~vr~~Aa~~Lg~ia----~~n~~-~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~ 162 (296)
T 1xqr_A 88 GRYLEAGAAGLRWRAAQLIGTCS----QNVAA-IQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ 162 (296)
T ss_dssp HTTTTCSSHHHHHHHHHHHHHHH----TTCHH-HHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHH----hCCHH-HHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 5 555444444555555555443 22322 1122222 24455555556 357888999988888876421100000
Q ss_pred -CCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHH--HhhhHHHHHhccCCHHHHHHHHHHHHHHHh
Q 039448 870 -GGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVY--KLLPSTFLLLQRKNREIIKANLGLLKVLVA 946 (1276)
Q Consensus 870 -~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~--~ll~~v~llL~s~~REIvKsaLgFvKV~v~ 946 (1276)
-....+..++.+ |....+.....+..||+.|.....+....+. ..++.++-+|.+++.+|...+++.+.-++.
T Consensus 163 ~~~~ggi~~L~~l----L~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~ 238 (296)
T 1xqr_A 163 FLRLDGFSVLMRA----MQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT 238 (296)
T ss_dssp HHHTTHHHHHHHH----HHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHH----HcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence 001223333333 3344688999999999999988766666543 568888889999999999999999887776
Q ss_pred hc
Q 039448 947 KS 948 (1276)
Q Consensus 947 ~l 948 (1276)
.-
T Consensus 239 ~~ 240 (296)
T 1xqr_A 239 DF 240 (296)
T ss_dssp TC
T ss_pred CC
Confidence 63
No 57
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=92.30 E-value=1.9 Score=44.55 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=77.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccC-CCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhh
Q 039448 832 SFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDE-ENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSD 910 (1276)
Q Consensus 832 ~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~-~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d 910 (1276)
..+|-++=.+++.|...|..|...|-.|+..-.+. ..--..+.+..++. -|...++.+...++.+|+.|.....+
T Consensus 54 g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~----lL~~~~~~v~~~a~~~L~~l~~~~~~ 129 (210)
T 4db6_A 54 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQ----LLSSPNEQILQEALWALSNIASGGNE 129 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH----HTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHH----HHcCCcHHHHHHHHHHHHHHHcCCHH
Confidence 46677777788889999999999888876310000 00000123444444 34555789999999999999875544
Q ss_pred hhHHH--HHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcC
Q 039448 911 LVSNV--YKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSH 949 (1276)
Q Consensus 911 ~i~~~--~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp 949 (1276)
....+ ...++.+.-+|.+.+.++.+.+++.+.-++..-+
T Consensus 130 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 170 (210)
T 4db6_A 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN 170 (210)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence 44332 2567777889999999999999998887776433
No 58
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=92.04 E-value=33 Score=43.43 Aligned_cols=141 Identities=14% Similarity=0.105 Sum_probs=74.4
Q ss_pred HhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhh
Q 039448 750 IKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYI 829 (1276)
Q Consensus 750 ~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~ 829 (1276)
+...+.+.+..+++.|..+|..++.....+. ....+...|+..+.+. ...-|..+...| ..+.....+ ....+
T Consensus 365 Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~--~~~~~i~~Lv~lL~~~---d~~vr~~A~~aL-~~L~~~~~~-~~~~i 437 (780)
T 2z6g_A 365 LGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSD---DINVVTCAAGIL-SNLTCNNYK-NKMMV 437 (780)
T ss_dssp HGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCS---CHHHHHHHHHHH-HHHTSSCHH-HHHHH
T ss_pred HHHHHcCCchHHHHHHHHHHHHHhccchhhh--hhhhHHHHHHHHHcCC---CHHHHHHHHHHH-HHHHhCCHH-HHHHH
Confidence 3445566677889999999999987543321 1244566666665532 334454554444 344443322 12222
Q ss_pred H-HHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHhccCCCCCC---------cccHHHHHHHHhhhccCCC-hhHHHH
Q 039448 830 L-SSFLTEIILALKEA--NKRTRNRAYDVLVQIGRAFGDEENGGG---------KENLYQFFNMVAGGLAGES-PHMISA 896 (1276)
Q Consensus 830 i-~~~lpEiIL~~Ke~--N~ktR~~A~~lLv~mg~~~~~~~~~~~---------~~~l~ef~~mV~aGLaG~t-phMiSa 896 (1276)
+ ...++-+|-.+++. .+..|..|...|-.|+... ++. ...+..++. -|.... +.++.+
T Consensus 438 ~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~-----~~~~~~~~~v~~~~~l~~L~~----lL~~~~~~~v~~~ 508 (780)
T 2z6g_A 438 CQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH-----QDAEMAQNAVRLHYGLPVVVK----LLHPPSHWPLIKA 508 (780)
T ss_dssp HTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSS-----TTHHHHHHHHHHTTCHHHHHH----TTSTTCCHHHHHH
T ss_pred HHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC-----chHHHHHHHHHHcCCHHHHHH----HhcCCChHHHHHH
Confidence 2 12344444444443 2478888887777664210 100 112333222 233333 478888
Q ss_pred HHHHHHHHHH
Q 039448 897 AVKGLARLAY 906 (1276)
Q Consensus 897 tI~ALsrLl~ 906 (1276)
++.+|+.|..
T Consensus 509 A~~aL~nLa~ 518 (780)
T 2z6g_A 509 TVGLIRNLAL 518 (780)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 8888888874
No 59
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.56 E-value=20 Score=41.74 Aligned_cols=242 Identities=16% Similarity=0.120 Sum_probs=133.9
Q ss_pred CCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHH--
Q 039448 737 GLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFII-- 814 (1276)
Q Consensus 737 ~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv-- 814 (1276)
+-+.+-+..+|..+..+-.+.+..++|-.-.+|++.|....+++..-++-|..+|.+ ..+...|.=+.|...+.
T Consensus 55 ~~dpsLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d----~d~~V~K~~I~~~tslYpl 130 (386)
T 3o2t_A 55 NKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRD----ENVNVVKKAILTMTQLYKV 130 (386)
T ss_dssp TTCGGGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTC----SSHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHH
Confidence 456667777777776776777899999999999999997777766656655555532 22233333333332222
Q ss_pred --HhccCCCh---H-HHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC-------C----------C
Q 039448 815 --AHVSKDDS---E-QRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENG-------G----------G 871 (1276)
Q Consensus 815 --~~l~~~~~---~-~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~-------~----------~ 871 (1276)
..++.... . ++.=+.+..+-..|+--....|..+|-.|+..+..+--.+-....+ + .
T Consensus 131 ~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~n 210 (386)
T 3o2t_A 131 ALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRD 210 (386)
T ss_dssp HHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTT
T ss_pred HHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCC
Confidence 22222221 1 1112233333333333335679999999999888877655421100 0 0
Q ss_pred ---------cccHHHHHHHHhhhccC--CChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHH
Q 039448 872 ---------KENLYQFFNMVAGGLAG--ESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGL 940 (1276)
Q Consensus 872 ---------~~~l~ef~~mV~aGLaG--~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgF 940 (1276)
++-=..+|..+...|.. .++..+.++|.+|+-|+-.=...++. +++.++.| ..+.. . .+
T Consensus 211 Hp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP~~~~r---Il~aL~~l-~~n~p-~-----t~ 280 (386)
T 3o2t_A 211 HPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSE---VIQAYETL-HANLP-P-----TL 280 (386)
T ss_dssp CSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSGGGHHH---HHHHHHHH-HHCC----------
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcHHHHHH---HHHHHHhh-cCCCC-c-----cH
Confidence 11123455555555442 34556778888888777543333332 23222222 11111 0 11
Q ss_pred HHHHHhhcChhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHhcCHHHHHhcCCH
Q 039448 941 LKVLVAKSHAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLLLEMLVKKCGLDAVKAVMPE 1001 (1276)
Q Consensus 941 vKV~v~~lp~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~IlerLIRKfG~e~V~~~~Pe 1001 (1276)
..+...-|+..|...+-.|++.... ..|..+|..+|++|.++ -++|-..+|.
T Consensus 281 -----sk~qvkSv~KtLR~~Ll~lLK~p~s--~~~~~~I~~~L~~Lg~s--~~Ei~~~~~~ 332 (386)
T 3o2t_A 281 -----AKSQVSSVRKNLKLHLLSVLKHPAS--LEFQAQITTLLVDLGTP--QAEIARNMPS 332 (386)
T ss_dssp -----CGGGHHHHHHHHHHHHHHHHTSGGG--GGGHHHHHHHHHHTTCC--HHHHHHTCC-
T ss_pred -----HHHHHHHHHHHHHHHHHHHHcCCCc--hhhHHHHHHHHHHHccc--HHHHHHhccc
Confidence 2233455666777777778885544 48888999999998773 3455555553
No 60
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=91.19 E-value=11 Score=50.42 Aligned_cols=80 Identities=9% Similarity=0.002 Sum_probs=58.7
Q ss_pred HHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhc---ChhHHHHHHHHHHHHHh------h-----------cc---h-
Q 039448 914 NVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKS---HAEGLQIHLASMVEGLL------K-----------WQ---D- 969 (1276)
Q Consensus 914 ~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~l---p~~~l~~~L~~lv~~Ll------~-----------ws---~- 969 (1276)
.+.++++.++.+++..+.+|.-.++.|-=.++... ..+.+.++++.+++.+. . |. .
T Consensus 348 ~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d 427 (1204)
T 3a6p_A 348 NFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFD 427 (1204)
T ss_dssp THHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccC
Confidence 35677888888999999999999999866555443 34678899999998882 1 33 1
Q ss_pred ------hhHHHHHHHHHHHHHHHHHhcCHH
Q 039448 970 ------DTKNQFKSKIKLLLEMLVKKCGLD 993 (1276)
Q Consensus 970 ------d~k~hfR~KVr~IlerLIRKfG~e 993 (1276)
+.=+.||..+..++..+.+.++.+
T Consensus 428 ~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~ 457 (1204)
T 3a6p_A 428 SDEDFNAFFNSSRAQQGEVMRLACRLDPKT 457 (1204)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 112578888999999999888333
No 61
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=90.30 E-value=25 Score=43.27 Aligned_cols=172 Identities=17% Similarity=0.199 Sum_probs=99.5
Q ss_pred hhhhhHHHHHHHHHHhcCcchhhhhH-HHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHH
Q 039448 759 GLIQKKAYKVLSTILRKCDGFLSSRL-EELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEI 837 (1276)
Q Consensus 759 ~~~QKKAYk~L~~i~~~~~~f~~~~~-~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEi 837 (1276)
...+..+-++|..++.. ......-+ ......|+..+.... ...|..++..|. .++.... ....+..++|-+
T Consensus 197 ~~~~~~a~~~L~nLs~~-~~~~~~l~~~g~l~~L~~ll~~~~---~~~~~~a~~~L~-nL~~~~~---~~~~~~~~i~~L 268 (644)
T 2z6h_A 197 EKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS---QRLVQNCLWTLR-NLSDAAT---KQEGMEGLLGTL 268 (644)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHHHHHHHTTHHHHHHTTTTCSC---HHHHHHHHHHHH-HHGGGCT---TCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC-cccHHHHHHCCCHHHHHHHHhcCC---HHHHHHHHHHHH-HHhhcch---hhhhhhhHHHHH
Confidence 56677888888888752 22111101 124455555555433 344444444432 3332211 122344667777
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHH-------hccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhh
Q 039448 838 ILALKEANKRTRNRAYDVLVQIGRA-------FGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSD 910 (1276)
Q Consensus 838 IL~~Ke~N~ktR~~A~~lLv~mg~~-------~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d 910 (1276)
+-.+++.+..+|..|...|..++.. +.+ ...+..++.++.. .+..+.....++.+|+.|.....+
T Consensus 269 v~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~------~g~v~~Lv~lL~~--~~~~~~v~~~a~~aL~nL~~~~~~ 340 (644)
T 2z6h_A 269 VQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQ------VGGIEALVRTVLR--AGDREDITEPAICALRHLTSRHQE 340 (644)
T ss_dssp HHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH------TTHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTSSSTT
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH------cCCHHHHHHHHHc--cCCcHHHHHHHHHHHHHHhcCCch
Confidence 7777888999999999999888652 111 1245555555432 122367888999999999764332
Q ss_pred --hhHH-H--HHhhhHHHHHhccCC-HHHHHHHHHHHHHHHh
Q 039448 911 --LVSN-V--YKLLPSTFLLLQRKN-REIIKANLGLLKVLVA 946 (1276)
Q Consensus 911 --~i~~-~--~~ll~~v~llL~s~~-REIvKsaLgFvKV~v~ 946 (1276)
.... + ...++.+.-+|.+.+ .+|.+.+++.+.-+..
T Consensus 341 ~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 341 AEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382 (644)
T ss_dssp HHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHcc
Confidence 1111 1 244666677888765 6999999998876553
No 62
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=90.06 E-value=5.5 Score=52.11 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=66.1
Q ss_pred HHhhhhhhHHHHHHHHhhhc-CCCchhHHHHHHHHHHHHhcc-------C-C------------CCCcc-----------
Q 039448 104 VLKKKGDFLTDLVVRVVRLS-SVTAGAVASGLTSLSRLLTGR-------G-R------------VNWSD----------- 151 (1276)
Q Consensus 104 vLr~kf~~~~~~l~~~l~~~-~~~~~~lRs~i~CL~~LL~aq-------d-~------------~~W~~----------- 151 (1276)
=+|.+...++-.+...|... +.+...++..+.|+.+++.-. + . +-|..
T Consensus 28 ~lR~~ig~~lh~l~~~L~~~~eddv~~~~~l~~~~~~~~~d~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~k~~~R~~l~ 107 (997)
T 1vsy_5 28 RVRARIGHFFHKLYVFLSTNFENNTNMFQILLHGLKVWFTDLGQETVFNEDPNAFIDVDFLENVQSLSHVNEPFTRTNFA 107 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHHTTCSSSCCSSTTSCCSSCCHHHHHHHHCCTTSSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHhcCcchhcccchhhhhhHHHHHHHHHHHhhcCCCchHHHH
Confidence 46888888888888888775 778999999999999986652 1 0 11210
Q ss_pred -------------------hh----hHHHHHHhhccCCchhHHHHHHHHHHHHHhccCCC
Q 039448 152 -------------------VS----QLYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGT 188 (1276)
Q Consensus 152 -------------------~~----~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~ 188 (1276)
.+ ..+.-|+.||++.=|+||+.||.++..+++.++++
T Consensus 108 ~Ra~~~H~~R~~~~~~~r~~t~l~~~ll~dL~~Ls~S~Y~~VR~~AQ~~L~~~~~~~~gs 167 (997)
T 1vsy_5 108 IRANSLHQSRVLLHSTNRKASKLENLLLVDIIQLATSLYPDIYKPAQGTLVHCMKQLVGS 167 (997)
T ss_dssp HHHHHHHHHHHHHSCCCBCCCSHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTBTTH
T ss_pred HHHHHHHHHHHHhhccccCCChHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhcccH
Confidence 01 27788999999999999999999999999877553
No 63
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=88.75 E-value=24 Score=43.76 Aligned_cols=318 Identities=15% Similarity=0.106 Sum_probs=168.6
Q ss_pred hhhhhHHhhccCCCChHHhHHHHHHHHHHHHHHhhCCCCCChHhH-HHHHHhhhhhhhCCCCCCCCchhHHHHHHHhhhh
Q 039448 18 VDLCSSILSRFSSSAQEEHQHLCAAIGAMSQELKDQNLPLTPISY-FGATCSSLDRLLSSPDPDRSSHIIGSLSTILSLL 96 (1276)
Q Consensus 18 ~d~~~~i~~r~~~S~~~~~k~~~avLaAv~e~i~~q~~~~t~t~Y-FaAlms~L~~~~~~~~~~~~~~~~~a~lyLL~lv 96 (1276)
.|-.+++..|..+|....-+.=| +-++.+. .+..+..--++ +-.|+.+|+.-. . |.+.+.+++--|-++
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~A--v~~Lk~~--sk~y~~~Vg~~~l~~li~~L~~d~----~--D~e~v~~~LetL~~l 89 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNA--VRALKSL--SKKYRLEVGIQAMEHLIHVLQTDR----S--DSEIIGYALDTLYNI 89 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHH--HHHHHHT--TTTTTTHHHHHTHHHHHHHHHSCT----T--CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhccchhHHHHH--HHHHHHH--HHHhHHHhhhhhHHHHHHHHhccc----c--cHHHHHHHHHHHHHH
Confidence 45566667777777777766532 1223333 23344443444 677888887521 1 456666666555444
Q ss_pred c-cCcChH----------HHhhhhh-------hHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhccCCCCCcchh--h-H
Q 039448 97 L-PKISVA----------VLKKKGD-------FLTDLVVRVVRLSSVTAGAVASGLTSLSRLLTGRGRVNWSDVS--Q-L 155 (1276)
Q Consensus 97 ~-p~vP~~----------vLr~kf~-------~~~~~l~~~l~~~~~~~~~lRs~i~CL~~LL~aqd~~~W~~~~--~-~ 155 (1276)
+ +.-... -+.-.|. +-+..|+.+|.. .+--.-..++.||+.|+.+.....|..+- | +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~--~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~g 167 (651)
T 3grl_A 90 ISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE--FDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMG 167 (651)
T ss_dssp HCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTH
T ss_pred hCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC--ccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCccc
Confidence 4 332211 1122232 234555666642 23334448999999999999999998753 3 9
Q ss_pred HHHHHhhccCCchhHHHHHHHHHHHHHhccCCCCCcc--chhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHH
Q 039448 156 YGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLA--PASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDAL 233 (1276)
Q Consensus 156 ~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~p~~h--pas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lL 233 (1276)
...|..+--|+|-.||-.|-..++.+-++ .+..+ .|.+...+-+...+...|+ .++.-.+-.+|.+|
T Consensus 168 i~~Lv~lL~d~rE~iRneallLL~~Lt~~---n~~iQklVAFEnaFe~Lf~Ii~~Eg~--------~~Ggivv~DCL~ll 236 (651)
T 3grl_A 168 VSRLMDLLADSREVIRNDGVLLLQALTRS---NGAIQKIVAFENAFERLLDIITEEGN--------SDGGIVVEDCLILL 236 (651)
T ss_dssp HHHHHGGGGCSSHHHHHHHHHHHHHHHTT---CHHHHHHHHHTTHHHHHHHHHHHHTG--------GGSHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHhcC---CHHHHHHHHHhccHHHHHHHHHhcCC--------CccchhHHHHHHHH
Confidence 99999999999999999999999988762 12222 1222333333333332222 23556677788888
Q ss_pred HhhccCCCchhHHHHH-----HHHHHhhccCchh------HHHH---HHHHHHHHhcCCCCC--CCHHH-------HHHH
Q 039448 234 KECLPLMSTKYTAVIL-----KYFKTLLELRQPL------VTRR---VTDALNVICLHPTLE--VSAEA-------LLDL 290 (1276)
Q Consensus 234 k~~l~~~~~~~~~~i~-----~~ll~Ll~l~n~~------lt~~---~~~~~~~lf~~~~~~--l~~~~-------~~~l 290 (1276)
..++-. ++..-+-+. +.+..|+....+. ...+ +++++..|+.+.... ....+ +.+.
T Consensus 237 ~nLLr~-N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~ 315 (651)
T 3grl_A 237 QNLLKN-NNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQ 315 (651)
T ss_dssp HHHHTT-CHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHhc-CHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHH
Confidence 888766 433222222 2334444443221 3344 666666666543210 11111 2333
Q ss_pred HHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCH--hHHhh--------hhhHHHHHHHHHhcC-CchhHHHHHHHH
Q 039448 291 LCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINR--EICST--------KLPIVFNALKDILAS-EHEEAIFAATEA 359 (1276)
Q Consensus 291 i~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~--~~c~~--------~LP~~f~~~~~~l~S-~~~~v~~~as~~ 359 (1276)
|..|.-. ..-+.+..+..+..+.. +.+-++ +.-+. ..|-+...++.++.| ....+|.+|..|
T Consensus 316 Ll~ll~~---~~~p~~i~~~Al~tla~----~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~c 388 (651)
T 3grl_A 316 LCTILMA---TGVPADILTETINTVSE----VIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYC 388 (651)
T ss_dssp HHHHHTC---SSCCHHHHHHHHHHHHH----HHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred HHHHHcc---CCCCHHHHHHHHHHHHH----HHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHH
Confidence 3333221 11122222222222222 222222 11111 135566666666655 457789999999
Q ss_pred HHHHHHH
Q 039448 360 LKNLINA 366 (1276)
Q Consensus 360 L~~li~~ 366 (1276)
|+..+.+
T Consensus 389 l~ay~~~ 395 (651)
T 3grl_A 389 FQCFLYK 395 (651)
T ss_dssp HHHHHTT
T ss_pred HHHHHhC
Confidence 9987654
No 64
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=87.48 E-value=9 Score=39.18 Aligned_cols=148 Identities=18% Similarity=0.127 Sum_probs=95.8
Q ss_pred HHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHH
Q 039448 747 FVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRR 826 (1276)
Q Consensus 747 f~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~ 826 (1276)
+..+...|.+.++.++..|...|..+-.. ..+..|.+.| . .+....|..++..|... ..
T Consensus 16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~~------~~~~~L~~~l----~---~~~~~vr~~a~~~L~~~-~~------- 74 (201)
T 3ltj_A 16 VEMYIKNLQDDSYYVRRAAAYALGKIGDE------RAVEPLIKAL----K---DEDAWVRRAAADALGQI-GD------- 74 (201)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHCCG------GGHHHHHHHT----T---CSSHHHHHHHHHHHHHH-CC-------
T ss_pred hHHHHHHhcCCCHHHHHHHHHHHHhcCCh------hHHHHHHHHH----c---CCCHHHHHHHHHHHHhh-CC-------
Confidence 34555678889999999999998876541 2233344333 2 22345677777766433 11
Q ss_pred hhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHH
Q 039448 827 SYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAY 906 (1276)
Q Consensus 827 ~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ 906 (1276)
+..++.++-++++.+...|..|...|-.++. ++.+..+ ...|...++....+++.+|+++-.
T Consensus 75 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L----~~~l~d~~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 75 ----ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPL----IKALKDEDWFVRIAAAFALGEIGD 136 (201)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHH----HHHTTCSSHHHHHHHHHHHHHHTC
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHH----HHHHcCCCHHHHHHHHHHHHHhCC
Confidence 1234444556788999999999999887643 2334443 345566778899999999987621
Q ss_pred HhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHH
Q 039448 907 EFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLK 942 (1276)
Q Consensus 907 ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvK 942 (1276)
.+.++.+.-+|.+.+.+|..+++.-+.
T Consensus 137 ---------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 137 ---------ERAVEPLIKALKDEDGWVRQSAADALG 163 (201)
T ss_dssp ---------GGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 234445566788888888877655443
No 65
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.17 E-value=13 Score=48.45 Aligned_cols=134 Identities=10% Similarity=0.133 Sum_probs=110.8
Q ss_pred hhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCC-hhHHHHHHHHHHHHH
Q 039448 827 SYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGES-PHMISAAVKGLARLA 905 (1276)
Q Consensus 827 ~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~t-phMiSatI~ALsrLl 905 (1276)
..++..++|-+.-++=|-+..+|++|-.-+..+...|. +..+...+-.+..+|.... -.-.-++...|.+|+
T Consensus 90 e~~~~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~ 162 (986)
T 2iw3_A 90 EPYIVQLVPAICTNAGNKDKEIQSVASETLISIVNAVN-------PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMV 162 (986)
T ss_dssp HHHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSC-------GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 46677788988888867677899999999999999884 4567888888888885332 345677888888888
Q ss_pred HHhhhhhH-HHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHhhc
Q 039448 906 YEFSDLVS-NVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSHAEGLQIHLASMVEGLLKW 967 (1276)
Q Consensus 906 ~ef~d~i~-~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~~l~~~L~~lv~~Ll~w 967 (1276)
-.-.+.+. .+.+++|.|.-.|..-..||-+++..-+.-++..+....+++++|.||.+|-+=
T Consensus 163 ~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~~~~~~~~~~~~~~p 225 (986)
T 2iw3_A 163 DAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIADP 225 (986)
T ss_dssp HHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTTGGGHHHHHHHHHCT
T ss_pred HHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhcCh
Confidence 77777777 488999999999999999999999999888889999999999999998888644
No 66
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=86.60 E-value=68 Score=39.29 Aligned_cols=110 Identities=14% Similarity=0.150 Sum_probs=69.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhH
Q 039448 834 LTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVS 913 (1276)
Q Consensus 834 lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~ 913 (1276)
++-++-.+++.+...|..|..+|..++.... ..+.+...+..+..-|...++.....+..+|+.|.....+...
T Consensus 226 l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~------~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~ 299 (644)
T 2z6h_A 226 MQALGLHLTDPSQRLVQNCLWTLRNLSDAAT------KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 299 (644)
T ss_dssp HHHHHTTTTCSCHHHHHHHHHHHHHHGGGCT------TCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhcch------hhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4444444567788888888888888865321 1233446666666666667788999999999988764322222
Q ss_pred HHH--HhhhHHHHHhcc-C-CHHHHHHHHHHHHHHHhhcC
Q 039448 914 NVY--KLLPSTFLLLQR-K-NREIIKANLGLLKVLVAKSH 949 (1276)
Q Consensus 914 ~~~--~ll~~v~llL~s-~-~REIvKsaLgFvKV~v~~lp 949 (1276)
.+. ..++.+..+|.+ . ..+|...+++.+.-++..-+
T Consensus 300 ~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~ 339 (644)
T 2z6h_A 300 MVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 339 (644)
T ss_dssp HHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred HHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCc
Confidence 221 345555555655 3 26888888887777654434
No 67
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=86.33 E-value=31 Score=37.72 Aligned_cols=171 Identities=14% Similarity=0.140 Sum_probs=113.9
Q ss_pred cchhHHHHHHHHHHhhccCCCch----hHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcc
Q 039448 221 KGAQEVLYVLDALKECLPLMSTK----YTAVILKYFKTLLELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLAL 296 (1276)
Q Consensus 221 ~~~~~~lh~L~lLk~~l~~~~~~----~~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~ 296 (1276)
+..+..+.+|..|..++..+|.. .+..+.+.+..++.-.|.=++-.|+.|+..|..+- .++++....++.+|.+
T Consensus 45 kD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~v--pL~~~~y~Kl~~aL~d 122 (265)
T 3b2a_A 45 DDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDV--PMGSKTFLKAAKTLVS 122 (265)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHH
Confidence 36688999999999999886443 33444444555555589999999999999999765 4778887788888777
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHHHHHhcCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhchhHHhh-
Q 039448 297 SVSTNETSADAMTFTARLLNVGMIKIYSINREICSTKLPIVFNALKDILASEHEEAIFAATEALKNLINACIDESLIKQ- 375 (1276)
Q Consensus 297 ~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~ci~~~~~~~- 375 (1276)
...+.+ .+.|.= +-..+..+.+ ....|++.+.+..++.|...++-.++-.+|.++-...=|++.+..
T Consensus 123 lik~~~----~il~~e-----aae~Lgklkv---~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~I 190 (265)
T 3b2a_A 123 LLESPD----DMMRIE-----TIDVLSKLQP---LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTLI 190 (265)
T ss_dssp HTTSCC----HHHHHH-----HHHHHHHCCB---SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGGT
T ss_pred HhcCCC----chHHHH-----HHHHhCcCCc---ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHHH
Confidence 654222 233331 3344444432 234688899999999999999988888888877665545444432
Q ss_pred --hcccccccCCCcCCCChHHHHHHHHHHHhhhhcchh
Q 039448 376 --GVDQITNVNSDARKSGPTVIEKICATVESLLDYHYS 411 (1276)
Q Consensus 376 --~v~~~~~~~~~~~~~~~~~i~~i~~~~~~~L~~~y~ 411 (1276)
++..+-+ ..++..+++....++..|+++-.
T Consensus 191 ~~eI~elL~------~eD~~l~e~aLd~Le~ils~pi~ 222 (265)
T 3b2a_A 191 LDEIPSLLQ------NDNEFIVELALDVLEKALSFPLL 222 (265)
T ss_dssp TTTHHHHHT------CSCHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHc------CCCHHHHHHHHHHHHHHHcCccc
Confidence 1111111 12456667777788888887543
No 68
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=86.24 E-value=11 Score=38.70 Aligned_cols=153 Identities=19% Similarity=0.178 Sum_probs=97.4
Q ss_pred CChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhc
Q 039448 738 LNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHV 817 (1276)
Q Consensus 738 l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l 817 (1276)
.+.+.+..|. ..|.+.+..++..|-+.|..+-.. ..+..| ...+. .+...-|..++..|-..
T Consensus 16 ~~~~~~~~L~----~~L~~~~~~vR~~A~~~L~~~~~~------~~~~~L----~~~l~---~~~~~vr~~a~~aL~~~- 77 (211)
T 3ltm_A 16 ADPEKVEMYI----KNLQDDSYYVRRAAAYALGKIGDE------RAVEPL----IKALK---DEDAWVRRAAADALGQI- 77 (211)
T ss_dssp CCGGGHHHHH----HHTTCSSHHHHHHHHHHHHHHCCG------GGHHHH----HHHTT---CSCHHHHHHHHHHHHHH-
T ss_pred cCHhHHHHHH----HHHcCCCHHHHHHHHHHHHHhCCc------cHHHHH----HHHHc---CCCHHHHHHHHHHHHhh-
Confidence 4556666555 456688899999999888876541 223333 33333 23456777777776433
Q ss_pred cCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHH
Q 039448 818 SKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAA 897 (1276)
Q Consensus 818 ~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSat 897 (1276)
.. +..++-++-++++.|...|..|...|-.++. .+.+..++ ..|...++....++
T Consensus 78 ~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~----~~l~d~~~~vr~~a 132 (211)
T 3ltm_A 78 GD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLI----KALKDEDWFVRIAA 132 (211)
T ss_dssp CC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHH----HHTTCSSHHHHHHH
T ss_pred CC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHH----HHHhCCCHHHHHHH
Confidence 11 1233444556789999999999999887753 23444443 44566778899999
Q ss_pred HHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHH
Q 039448 898 VKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLK 942 (1276)
Q Consensus 898 I~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvK 942 (1276)
+.+|+++-. .+.++.+.-+|.+.+.+|..+++.-+.
T Consensus 133 ~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 133 AFALGEIGD---------ERAVEPLIKALKDEDGWVRQSAADALG 168 (211)
T ss_dssp HHHHHHHCC---------GGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHcCC---------HHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999998721 133444556778888888877654433
No 69
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=85.86 E-value=31 Score=39.78 Aligned_cols=291 Identities=11% Similarity=0.084 Sum_probs=141.3
Q ss_pred cccCCChhhhhHHhhccCCCChHHhHHHHHHHHHHHHHHh--hCCCCCC---hHhHHHHHHhhhhhhhCCCCCCCCchhH
Q 039448 12 FSIGNDVDLCSSILSRFSSSAQEEHQHLCAAIGAMSQELK--DQNLPLT---PISYFGATCSSLDRLLSSPDPDRSSHII 86 (1276)
Q Consensus 12 ~~~~~~~d~~~~i~~r~~~S~~~~~k~~~avLaAv~e~i~--~q~~~~t---~t~YFaAlms~L~~~~~~~~~~~~~~~~ 86 (1276)
|.-.+...+-++. +.|-+++. +.+.-. .+++.+|. -+|.+-+ -|.+|...+-.+.. ++...
T Consensus 19 ~~~~~k~~v~qe~-r~fn~~~~-~~~kc~---~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s---------~d~~l 84 (355)
T 3tjz_B 19 FQHLEKSAVLQEA-RVFNETPI-NPRKCA---HILTKILYLINQGEHLGTTEATEAFFAMTKLFQS---------NDPTL 84 (355)
T ss_dssp -CCCCHHHHHHHG-GGTTSSSC-CHHHHH---HHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGC---------CCHHH
T ss_pred cccchHHHHHHHH-HHhcCCCC-cHHHHH---HHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcC---------CCHHH
Confidence 4333455566663 35444443 333221 12233332 3554433 36778776666653 45566
Q ss_pred HHHHHHhhhhccCcChHHHhhhhhhHHHHHHHHhhhc-CCCchhHHH-HHHHHHHHHhccCCCCCcchhhHHHHHHhhcc
Q 039448 87 GSLSTILSLLLPKISVAVLKKKGDFLTDLVVRVVRLS-SVTAGAVAS-GLTSLSRLLTGRGRVNWSDVSQLYGVVLAFMT 164 (1276)
Q Consensus 87 ~a~lyLL~lv~p~vP~~vLr~kf~~~~~~l~~~l~~~-~~~~~~lRs-~i~CL~~LL~aqd~~~W~~~~~~~~~LL~f~~ 164 (1276)
-=++||--+.++..|.-++- ...-|... ....|.+|+ +|.+|+.+... . .+......+-+.-.
T Consensus 85 KrLvYLyl~~~~~~~~e~iL---------v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~---~---m~~~l~~~lk~~L~ 149 (355)
T 3tjz_B 85 RRMCYLTIKEMSCIAEDVII---------VTSSLTKDMTGKEDSYRGPAVRALCQITDS---T---MLQAIERYMKQAIV 149 (355)
T ss_dssp HHHHHHHHHHHTTTSSCGGG---------GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT---T---THHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCHHHHHH---------HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH---H---HHHHHHHHHHHHcC
Confidence 77888888888777655431 22222222 234578884 57888877322 1 23346777778889
Q ss_pred CCchhHHHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHHHhhccCCCchh
Q 039448 165 DSRLKVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDALKECLPLMSTKY 244 (1276)
Q Consensus 165 d~RPKVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lLk~~l~~~~~~~ 244 (1276)
|..|=|||.|--|+..++.. +-+.+-.|+.+.-..- .......+.|++++|.++-.. ....
T Consensus 150 d~~pyVRk~A~l~~~kL~~~---------~pe~v~~~~~~l~~ll---------~d~n~~V~~~Al~lL~ei~~~-d~~a 210 (355)
T 3tjz_B 150 DKVPSVSSSALVSSLHLLKC---------SFDVVKRWVNEAQEAA---------SSDNIMVQYHALGLLYHVRKN-DRLA 210 (355)
T ss_dssp CSSHHHHHHHHHHHHHHTTT---------CHHHHHTTHHHHHHHT---------TCSSHHHHHHHHHHHHHHHTT-CHHH
T ss_pred CCCHHHHHHHHHHHHHHhcc---------CHHHHHHHHHHHHHHh---------cCCCccHHHHHHHHHHHHHhh-chHH
Confidence 99999999999999877742 1122222332222211 112456678999999998754 4444
Q ss_pred HHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHh
Q 039448 245 TAVILKYFKTLLELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYS 324 (1276)
Q Consensus 245 ~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~ 324 (1276)
+.++...+.. ..+.+|+..-.....+..+.... +.-..+.+.++|... ....+ + .+.+ +|...+..
T Consensus 211 ~~kLv~~l~~-~~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~---L~~~~---~-aVvy-----Ea~k~I~~ 276 (355)
T 3tjz_B 211 VSKMISKFTR-HGLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESC---LRNKH---E-MVVY-----EAASAIVN 276 (355)
T ss_dssp HHHHHHHHHS-SCCSCHHHHHHHHHHHTCC------------------CC---CCCSS---H-HHHH-----HHHHHHTC
T ss_pred HHHHHHHHhc-CCCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHH---HcCCC---h-HHHH-----HHHHHHHh
Confidence 4444444332 13446666544444432222111 001122344444433 22111 1 1111 13344433
Q ss_pred cCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Q 039448 325 INREICSTKLPIVFNALKDILASEHEEAIFAATEALKNLIN 365 (1276)
Q Consensus 325 ~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~ 365 (1276)
+.. .....+-...+.+..+|.|..+++++.|-..|..+..
T Consensus 277 l~~-~~~~~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~ 316 (355)
T 3tjz_B 277 LPG-CSAKELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAM 316 (355)
T ss_dssp ------------CCCTHHHHHHSSSSSSHHHHHHCC-----
T ss_pred ccC-CCHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Confidence 322 1112233334556678889999999999888876654
No 70
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=84.75 E-value=1.1e+02 Score=40.23 Aligned_cols=73 Identities=22% Similarity=0.240 Sum_probs=55.2
Q ss_pred HHhhhhhhHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhccCCCCCcchh-----hHHHHHHhhccCCchhHHHHHHHHH
Q 039448 104 VLKKKGDFLTDLVVRVVRLSSVTAGAVASGLTSLSRLLTGRGRVNWSDVS-----QLYGVVLAFMTDSRLKVRRQSHLCV 178 (1276)
Q Consensus 104 vLr~kf~~~~~~l~~~l~~~~~~~~~lRs~i~CL~~LL~aqd~~~W~~~~-----~~~~~LL~f~~d~RPKVRK~Aq~av 178 (1276)
.++..|.+++..+..+|... .++.++..++.||+.+ ..|-.++ +.+..|+ |..=+.|++|-.|-+|+
T Consensus 199 ~L~~~~~~Il~ll~~iL~~~-~~~~lv~~~L~~L~~~------~sWI~i~~i~~~~ll~~L~-~~~L~~~~~r~aA~dcL 270 (1073)
T 3gjx_A 199 SMCNEFSQIFQLCQFVMENS-QNAPLVHATLETLLRF------LNWIPLGYIFETKLISTLI-YKFLNVPMFRNVSLKCL 270 (1073)
T ss_dssp HHHHTCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH------TTTSCTHHHHSSSHHHHHH-HHTSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHH------HHhcCHHHhccchHHHHHH-HHhcCChHHHHHHHHHH
Confidence 57788899999988888754 4667888888888887 4686543 2555554 33336899999999999
Q ss_pred HHHHhc
Q 039448 179 REILLS 184 (1276)
Q Consensus 179 ~~IL~~ 184 (1276)
+.|+..
T Consensus 271 ~eIv~k 276 (1073)
T 3gjx_A 271 TEIAGV 276 (1073)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 999973
No 71
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=84.08 E-value=31 Score=38.56 Aligned_cols=210 Identities=15% Similarity=0.169 Sum_probs=122.4
Q ss_pred hHhHHHHHHHHHcCCCChhhHHHHH-----HHHhh-hhcCCchhhhhHHHHHHHHHHhcCcc----hhh-hhHHHHHHHH
Q 039448 723 MRARLFDLALSLLPGLNAKEIDVLF-----VAIKP-ALQDDEGLIQKKAYKVLSTILRKCDG----FLS-SRLEELLGLM 791 (1276)
Q Consensus 723 ~~~~llDL~~alv~~l~~~~~~~Lf-----~~~~~-~l~~~d~~~QKKAYk~L~~i~~~~~~----f~~-~~~~el~~~L 791 (1276)
.+..-+|.+.-++...+.. ..+. ..+.. .|.++++.+|..|-.+|..|+..... ++. .-+.-|.++|
T Consensus 56 ~k~~Al~~L~~lv~~~dna--~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL 133 (296)
T 1xqr_A 56 EREGALELLADLCENMDNA--ADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL 133 (296)
T ss_dssp HHHHHHHHHHHHHTSHHHH--HHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhH--HHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence 3445566666666654432 2222 23445 77788999999999999999974322 222 2344555555
Q ss_pred HhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCC-CC
Q 039448 792 IEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILS-SFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEE-NG 869 (1276)
Q Consensus 792 ~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~-~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~-~~ 869 (1276)
... ... ..|-.+++.| ..++....+ ....|+. -.+|-++-++++.+.+.|..|--+|-.++..-.+.- .-
T Consensus 134 ~~~---~~~---~v~~~A~~AL-snl~~~~~~-~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~v 205 (296)
T 1xqr_A 134 DRD---ACD---TVRVKALFAI-SCLVREQEA-GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTL 205 (296)
T ss_dssp HHC---SCH---HHHHHHHHHH-HHHHTTCHH-HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccC---CCH---HHHHHHHHHH-HHHHcCCcH-HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHH
Confidence 432 112 3344444443 233333322 1234443 467777777888899999999999988876311000 00
Q ss_pred CCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhH-------HHHHhhhHHHHHhcc--CCHHHHHHHHHH
Q 039448 870 GGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVS-------NVYKLLPSTFLLLQR--KNREIIKANLGL 940 (1276)
Q Consensus 870 ~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~-------~~~~ll~~v~llL~s--~~REIvKsaLgF 940 (1276)
-....+..++.+ |....+.++-.+..||+.|+-.+...+. .+.++++...--|++ .++||++-+..+
T Consensus 206 v~~g~i~~Lv~L----L~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~i 281 (296)
T 1xqr_A 206 CSMGMVQQLVAL----VRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKL 281 (296)
T ss_dssp HHTTHHHHHHHH----HTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHcCCHHHHHHH----HcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 001233333443 4555688999999999999866433221 144666665555663 368999888888
Q ss_pred HHHHHh
Q 039448 941 LKVLVA 946 (1276)
Q Consensus 941 vKV~v~ 946 (1276)
+..|..
T Consensus 282 l~~~f~ 287 (296)
T 1xqr_A 282 LQTCFS 287 (296)
T ss_dssp HHHHCC
T ss_pred HHHHcC
Confidence 887653
No 72
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=83.67 E-value=30 Score=37.22 Aligned_cols=153 Identities=13% Similarity=0.040 Sum_probs=96.5
Q ss_pred hhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHH
Q 039448 752 PALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILS 831 (1276)
Q Consensus 752 ~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~ 831 (1276)
..|.++++.++..|.+.|..+.. .+....|...+. .+....|..++..|-. +.... ..++
T Consensus 30 ~~L~~~~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~---d~~~~vR~~A~~aL~~-l~~~~------~~~~ 89 (280)
T 1oyz_A 30 RLLDDHNSLKRISSARVLQLRGG----------QDAVRLAIEFCS---DKNYIRRDIGAFILGQ-IKICK------KCED 89 (280)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCC----------HHHHHHHHHHHT---CSSHHHHHHHHHHHHH-SCCCT------TTHH
T ss_pred HHHHcCCHHHHHHHHHHHHccCC----------chHHHHHHHHHc---CCCHHHHHHHHHHHHH-hcccc------ccch
Confidence 45677888999999999887753 122333333333 2234567777766643 22211 1233
Q ss_pred HHHHHHH-HHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhh
Q 039448 832 SFLTEII-LALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSD 910 (1276)
Q Consensus 832 ~~lpEiI-L~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d 910 (1276)
.+++-+. .+.++.+...|..|...|-.+|.... ..-.+++..+...|...+|....+++.+|+.+--
T Consensus 90 ~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--------~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~---- 157 (280)
T 1oyz_A 90 NVFNILNNMALNDKSACVRATAIESTAQRCKKNP--------IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND---- 157 (280)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--------cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----
Confidence 3444333 46788999999999999999986431 1234566667777787788889999999986532
Q ss_pred hhHHHHHhhhHHHHHhccCCHHHHHHHHHHH
Q 039448 911 LVSNVYKLLPSTFLLLQRKNREIIKANLGLL 941 (1276)
Q Consensus 911 ~i~~~~~ll~~v~llL~s~~REIvKsaLgFv 941 (1276)
.+.++.+.-+|.+.+.+|...++.-+
T Consensus 158 -----~~~~~~L~~~l~d~~~~vr~~a~~aL 183 (280)
T 1oyz_A 158 -----KATIPLLINLLKDPNGDVRNWAAFAI 183 (280)
T ss_dssp ------CCHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 12445555678888888877764443
No 73
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=83.55 E-value=27 Score=41.04 Aligned_cols=181 Identities=12% Similarity=0.071 Sum_probs=96.5
Q ss_pred HHhhhhcCCchhhhhHHHHHHHHHHhcCcc---hhh--hhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChH
Q 039448 749 AIKPALQDDEGLIQKKAYKVLSTILRKCDG---FLS--SRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSE 823 (1276)
Q Consensus 749 ~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~---f~~--~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~ 823 (1276)
.+...+.++++.+|.+|-..|..++..... .+. ..+..|.++|... +....|..+...|- .+.....
T Consensus 21 ~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~------~~~~~~~~a~~~L~-~ls~~~~- 92 (529)
T 1jdh_A 21 ELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT------NDVETARCTAGTLH-NLSHHRE- 92 (529)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC------CCHHHHHHHHHHHH-HHTTSHH-
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC------CCHHHHHHHHHHHH-HHHcCch-
Confidence 344566788999999999999999974321 111 2344444444322 12234445554443 3344322
Q ss_pred HHHhhhHH-HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccH--HHHHHHHhhhccCCChhHHHHHHHH
Q 039448 824 QRRSYILS-SFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENL--YQFFNMVAGGLAGESPHMISAAVKG 900 (1276)
Q Consensus 824 ~~~~~~i~-~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l--~ef~~mV~aGLaG~tphMiSatI~A 900 (1276)
....++. -.+|-++-.+++.+...|..|...|..++..-.+ ....+ ...+..+..-|...++.....+..+
T Consensus 93 -~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~-----~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~ 166 (529)
T 1jdh_A 93 -GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG-----AKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 166 (529)
T ss_dssp -HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTT-----HHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHH
T ss_pred -hHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcc-----hHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence 1222222 3667777778889999999999999999874211 01111 1123333334444567777777778
Q ss_pred HHHHHHHhhhhhHHHH--HhhhHHHHHhccCCHH-HHHHHHHHHHH
Q 039448 901 LARLAYEFSDLVSNVY--KLLPSTFLLLQRKNRE-IIKANLGLLKV 943 (1276)
Q Consensus 901 LsrLl~ef~d~i~~~~--~ll~~v~llL~s~~RE-IvKsaLgFvKV 943 (1276)
|..+.+...+....+. ..++.+.-+|.+.+.+ +..++.+.+..
T Consensus 167 L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~ 212 (529)
T 1jdh_A 167 LQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV 212 (529)
T ss_dssp HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 8877653322221111 2344444455554443 33344444443
No 74
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=81.55 E-value=27 Score=35.48 Aligned_cols=165 Identities=17% Similarity=0.164 Sum_probs=101.7
Q ss_pred hhHhHHHHHHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCcc
Q 039448 722 FMRARLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFS 801 (1276)
Q Consensus 722 ~~~~~llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ 801 (1276)
..|...+..+..+- +.+.+..|. ..+.+.++.++..|.+.|..+... ..+..|.+ .+. .+
T Consensus 29 ~vr~~A~~~L~~~~---~~~~~~~L~----~~l~~~~~~vr~~a~~~L~~~~~~------~~~~~L~~----~l~---d~ 88 (201)
T 3ltj_A 29 YVRRAAAYALGKIG---DERAVEPLI----KALKDEDAWVRRAAADALGQIGDE------RAVEPLIK----ALK---DE 88 (201)
T ss_dssp HHHHHHHHHHHHHC---CGGGHHHHH----HHTTCSSHHHHHHHHHHHHHHCCG------GGHHHHHH----HTT---CS
T ss_pred HHHHHHHHHHHhcC---ChhHHHHHH----HHHcCCCHHHHHHHHHHHHhhCCH------HHHHHHHH----HHc---CC
Confidence 45554444444332 334444443 556788899999999999877532 12233333 333 23
Q ss_pred chHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 039448 802 AKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNM 881 (1276)
Q Consensus 802 ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~m 881 (1276)
...-|..++..|-.. .. +..++.++-++++.|...|..|...|-.++. .+.+..+.
T Consensus 89 ~~~vr~~a~~aL~~~-~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~-- 144 (201)
T 3ltj_A 89 DGWVRQSAAVALGQI-GD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----------ERAVEPLI-- 144 (201)
T ss_dssp SHHHHHHHHHHHHHH-CC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----------GGGHHHHH--
T ss_pred CHHHHHHHHHHHHHh-Cc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----------HHHHHHHH--
Confidence 456777888777533 11 1234445556789999999999999888753 23444443
Q ss_pred HhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHH
Q 039448 882 VAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLL 941 (1276)
Q Consensus 882 V~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFv 941 (1276)
..|...++....+++.||+++- + .+.++.+.-+|.+.+.+|..+++.-+
T Consensus 145 --~~l~d~~~~vr~~A~~aL~~~~----~-----~~~~~~L~~~l~d~~~~vr~~A~~aL 193 (201)
T 3ltj_A 145 --KALKDEDGWVRQSAADALGEIG----G-----ERVRAAMEKLAETGTGFARKVAVNYL 193 (201)
T ss_dssp --HHTTCSSHHHHHHHHHHHHHHC----S-----HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred --HHHcCCCHHHHHHHHHHHHHhC----c-----hhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 3445567889999999999871 1 23344445566788888877776544
No 75
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=81.46 E-value=1.2e+02 Score=38.20 Aligned_cols=105 Identities=15% Similarity=0.158 Sum_probs=63.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHH
Q 039448 835 TEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSN 914 (1276)
Q Consensus 835 pEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~ 914 (1276)
+-++-.+++.+...+..|...|..++..... .......+..+..-|...++....+++.+|+.|.....+....
T Consensus 363 ~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~------~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~ 436 (780)
T 2z6g_A 363 QALGLHLTDPSQRLVQNCLWTLRNLSDAATK------QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 436 (780)
T ss_dssp HHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT------CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHhccchh------hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3333345667788888888888877753321 2234456666666666778999999999999887643222222
Q ss_pred HH--HhhhHHHHHhcc-CCH-HHHHHHHHHHHHHH
Q 039448 915 VY--KLLPSTFLLLQR-KNR-EIIKANLGLLKVLV 945 (1276)
Q Consensus 915 ~~--~ll~~v~llL~s-~~R-EIvKsaLgFvKV~v 945 (1276)
+. ..++.++-+|.+ .+. +|...+++.+.-+.
T Consensus 437 i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~ 471 (780)
T 2z6g_A 437 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLT 471 (780)
T ss_dssp HHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 21 334555555544 333 77777766665543
No 76
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=79.48 E-value=41 Score=34.39 Aligned_cols=166 Identities=17% Similarity=0.162 Sum_probs=103.8
Q ss_pred hhHhHHHHHHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCcc
Q 039448 722 FMRARLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFS 801 (1276)
Q Consensus 722 ~~~~~llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ 801 (1276)
..|...+..+..+- +.+.+..|. ..+.+.+..++..|.+.|..+... ..+..|. ..+. .+
T Consensus 34 ~vR~~A~~~L~~~~---~~~~~~~L~----~~l~~~~~~vr~~a~~aL~~~~~~------~~~~~L~----~~l~---~~ 93 (211)
T 3ltm_A 34 YVRRAAAYALGKIG---DERAVEPLI----KALKDEDAWVRRAAADALGQIGDE------RAVEPLI----KALK---DE 93 (211)
T ss_dssp HHHHHHHHHHHHHC---CGGGHHHHH----HHTTCSCHHHHHHHHHHHHHHCCG------GGHHHHH----HHTT---CS
T ss_pred HHHHHHHHHHHHhC---CccHHHHHH----HHHcCCCHHHHHHHHHHHHhhCCH------HHHHHHH----HHHc---CC
Confidence 45555555544432 244454444 466788899999999999887541 1223333 3332 23
Q ss_pred chHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 039448 802 AKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNM 881 (1276)
Q Consensus 802 ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~m 881 (1276)
...-|..++..|-.. .. +..++.++-.+++.|...|..|...|-.++. .+.+..+.
T Consensus 94 ~~~vr~~a~~aL~~~-~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~-- 149 (211)
T 3ltm_A 94 DGWVRQSAAVALGQI-GD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----------ERAVEPLI-- 149 (211)
T ss_dssp SHHHHHHHHHHHHHH-CC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHH--
T ss_pred CHHHHHHHHHHHHHh-Cc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC----------HHHHHHHH--
Confidence 456777887776432 11 1234445556689999999999999988743 23444443
Q ss_pred HhhhccCCChhHHHHHHHHHHHHHHHhhhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHH
Q 039448 882 VAGGLAGESPHMISAAVKGLARLAYEFSDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLK 942 (1276)
Q Consensus 882 V~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvK 942 (1276)
..|...++....+++.||+++-. .+.++.+.-+|.+.+.+|..+++.-++
T Consensus 150 --~~l~d~~~~vr~~a~~aL~~~~~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~ 199 (211)
T 3ltm_A 150 --KALKDEDGWVRQSAADALGEIGG---------ERVRAAMEKLAETGTGFARKVAVNYLE 199 (211)
T ss_dssp --HHTTCSSHHHHHHHHHHHHHHCS---------HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred --HHHcCCCHHHHHHHHHHHHHhCc---------hhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34556678899999999998721 233444455677888888877765544
No 77
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=78.87 E-value=37 Score=37.52 Aligned_cols=143 Identities=13% Similarity=0.106 Sum_probs=86.2
Q ss_pred HHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhc--Ccc--hhhhhHHHHHHHHHhhCCCCCccchHHHHH-HHHHHHHhc
Q 039448 743 IDVLFVAIKPALQDDEGLIQKKAYKVLSTILRK--CDG--FLSSRLEELLGLMIEVLPSCHFSAKRHRLD-CLYFIIAHV 817 (1276)
Q Consensus 743 ~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~--~~~--f~~~~~~el~~~L~~~~~~~~~~ak~~RL~-cL~~lv~~l 817 (1276)
++.+|+.+.--+.+++..+..++..+|..+++. ..+ +...-..-+.-.|++-+...-..- |...+ +|..+ ..+
T Consensus 85 lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~k~~v-R~~~r~il~~l-~~v 162 (266)
T 2of3_A 85 SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNM-RTSVRDIVNVL-SDV 162 (266)
T ss_dssp HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCSSHHH-HHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCChHHH-HHHHHHHHHHH-HHH
Confidence 444566443333477888999999999998762 122 222223455566666554333222 22222 33322 222
Q ss_pred cCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHH---HHHhhhccCCChhHH
Q 039448 818 SKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFF---NMVAGGLAGESPHMI 894 (1276)
Q Consensus 818 ~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~---~mV~aGLaG~tphMi 894 (1276)
.+ -..+... ++=++|.-|-|+|....++|..|-+.+.-. + ..++ ..|+.-++-..+...
T Consensus 163 ~~-------~~~v~~~---l~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~---~~~l~~~~~ia~ll~D~d~~VR 224 (266)
T 2of3_A 163 VG-------PLKMTPM---LLDALKSKNARQRSECLLVIEYYITNAGIS-----P---LKSLSVEKTVAPFVGDKDVNVR 224 (266)
T ss_dssp HC-------HHHHHHH---HHHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----G---GGGGCHHHHHGGGGGCSSHHHH
T ss_pred CC-------HHHHHHH---HHHHHccCCHHHHHHHHHHHHHHHHhcCCC-----c---cccccchHHHHHHHcCCCHHHH
Confidence 21 1123333 333678889999999999999998876432 1 2356 778777777778889
Q ss_pred HHHHHHHHHHH
Q 039448 895 SAAVKGLARLA 905 (1276)
Q Consensus 895 SatI~ALsrLl 905 (1276)
.||+.++.-+-
T Consensus 225 ~aAl~~lve~y 235 (266)
T 2of3_A 225 NAAINVLVACF 235 (266)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887543
No 78
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=73.78 E-value=1.7e+02 Score=37.11 Aligned_cols=109 Identities=12% Similarity=0.074 Sum_probs=74.0
Q ss_pred HHHHHHHhhccCchhHHHHHHHHHHHHhcCCCC---CCC----HH--HHHHHHHHhcccCCCCCCchhhHHHHHHHHHHH
Q 039448 248 ILKYFKTLLELRQPLVTRRVTDALNVICLHPTL---EVS----AE--ALLDLLCSLALSVSTNETSADAMTFTARLLNVG 318 (1276)
Q Consensus 248 i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~---~l~----~~--~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a 318 (1276)
..+.+..||.-.|+.|.+++.+++..|..++.. .+. +. ...+++-+|... +....+-..+| |
T Consensus 607 a~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s--~D~~~r~AAag-------A 677 (778)
T 3opb_A 607 YWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL--SDVESQRAVAA-------I 677 (778)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC--SCHHHHHHHHH-------H
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC--CCHHHHHHHHH-------H
Confidence 567888888889999999999999999976642 221 11 235666666542 11122221222 3
Q ss_pred HHHHHhcCHhHHhhh--hhHHHHHHHHHhcC--CchhHHHHHHHHHHHHHH
Q 039448 319 MIKIYSINREICSTK--LPIVFNALKDILAS--EHEEAIFAATEALKNLIN 365 (1276)
Q Consensus 319 ~~~l~~~~~~~c~~~--LP~~f~~~~~~l~S--~~~~v~~~as~~L~~li~ 365 (1276)
+.++...++..|-.- .++.+..+.++|.. +.++++..+.-+|.+|..
T Consensus 678 LAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 678 FANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp HHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 455555566655443 35688888888887 999999999999999875
No 79
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=73.00 E-value=1.5e+02 Score=34.61 Aligned_cols=109 Identities=14% Similarity=0.148 Sum_probs=64.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHH
Q 039448 835 TEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSN 914 (1276)
Q Consensus 835 pEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~ 914 (1276)
+-++-.+++.+...|..|...|..++.... ....+...+..+..-|...++.....+..+|+.|.....+....
T Consensus 230 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~ 303 (529)
T 1jdh_A 230 QALGLHLTDPSQRLVQNCLWTLRNLSDAAT------KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 303 (529)
T ss_dssp HHHHTTTTSSCHHHHHHHHHHHHHHHTTCT------TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHhcCCh------hhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 333334455667777777777766665321 12233455555555566667888889999999886643323222
Q ss_pred HH--HhhhHHHHHhcc--CCHHHHHHHHHHHHHHHhhcC
Q 039448 915 VY--KLLPSTFLLLQR--KNREIIKANLGLLKVLVAKSH 949 (1276)
Q Consensus 915 ~~--~ll~~v~llL~s--~~REIvKsaLgFvKV~v~~lp 949 (1276)
+. ..++.+.-+|.+ .+.+|...+++.+.-+....|
T Consensus 304 ~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~ 342 (529)
T 1jdh_A 304 VCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 342 (529)
T ss_dssp HHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSST
T ss_pred HHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCc
Confidence 21 335555555554 347888888888877655444
No 80
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=68.15 E-value=1.8e+02 Score=34.95 Aligned_cols=250 Identities=16% Similarity=0.239 Sum_probs=132.6
Q ss_pred hHHHHHHhhccCCchhHHHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHHH
Q 039448 154 QLYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDAL 233 (1276)
Q Consensus 154 ~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~lL 233 (1276)
.+++++|.||=|.-++||+.|-.++-.+-+. -.-..+++.+.|.|. .....++-++=+.|
T Consensus 65 ~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--------~~i~kiaDvL~QlLq------------tdd~~E~~~V~~sL 124 (507)
T 3u0r_A 65 SAINAQLDLCEDEDVSIRRQAIKELPQFATG--------ENLPRVADILTQLLQ------------TDDSAEFNLVNNAL 124 (507)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--------TCHHHHHHHHHHHTT------------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh--------hhhhhHHHHHHHHHh------------ccchHHHHHHHHHH
Confidence 4999999999999999999887666544432 336788888888773 11445666665666
Q ss_pred HhhccCCCchhHHHHHHHHHHhhccCchhHHHHHHHHHHH-HhcCCCCCCCHHH---HHHHHHHhcccCCCCCCchhhHH
Q 039448 234 KECLPLMSTKYTAVILKYFKTLLELRQPLVTRRVTDALNV-ICLHPTLEVSAEA---LLDLLCSLALSVSTNETSADAMT 309 (1276)
Q Consensus 234 k~~l~~~~~~~~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~-lf~~~~~~l~~~~---~~~li~aL~~~~~~~~~~~~~l~ 309 (1276)
..++-. .+..++..++..+.+ ++..++..+++-+.. ++.-+.+.++.+. +.+.|.-+... -++.
T Consensus 125 ~sllk~---Dpk~tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~D-----VT~~--- 192 (507)
T 3u0r_A 125 LSIFKM---DAKGTLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLED-----VTGE--- 192 (507)
T ss_dssp HHHHHH---CHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTS-----CCHH---
T ss_pred HHHHhc---ChHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhcc-----ccHH---
Confidence 555544 344444445554445 678888888877743 3443444444432 22222221110 0111
Q ss_pred HHHHHHHHHHHHHHhcCHhHHhhhhhHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHhhchhHHhhhcccccccCCCcC
Q 039448 310 FTARLLNVGMIKIYSINREICSTKLPIVFNALKDILASEH-EEAIFAATEALKNLINACIDESLIKQGVDQITNVNSDAR 388 (1276)
Q Consensus 310 ~~~~vl~~a~~~l~~~~~~~c~~~LP~~f~~~~~~l~S~~-~~v~~~as~~L~~li~~ci~~~~~~~~v~~~~~~~~~~~ 388 (1276)
. |..+|++|.+=. .+-+ +--+-|..++.+=.+ . +. .-.
T Consensus 193 -----------------------E----F~L~m~lL~~lkl~~t~-~g~qeLv~ii~eQa~----L---~~------~f~ 231 (507)
T 3u0r_A 193 -----------------------E----FVLFMKILSGLKSLQTV-SGRQQLVELVAEQAD----L---EQ------TFN 231 (507)
T ss_dssp -----------------------H----HHHHHHHHHTSGGGSSH-HHHHHHHHHHHHHHT----T---TS------CCC
T ss_pred -----------------------H----HHHHHHHHHhcccccCc-hHHHHHHHHHHHHHh----c---cC------CCC
Confidence 1 333344432210 0001 122344444432110 1 00 001
Q ss_pred CCChHHHHHHHHHHHhhhhc--chhhhHHHHHHHHHHHHHhhcccchh-----hHHHHHHHHHhhhcCCCCCCcchhHHH
Q 039448 389 KSGPTVIEKICATVESLLDY--HYSAVWDMAFQIVSTMFDKLGTYSSY-----FMRGALKNLADMQNLPDEDFPYRKQLH 461 (1276)
Q Consensus 389 ~~~~~~i~~i~~~~~~~L~~--~y~~aw~~vL~vl~~lf~~lg~~~~~-----~l~~~L~~l~~lr~~~~~~f~~~~~ld 461 (1276)
..++..|.+++.++...|-+ +-.++-+.+=-++.-+|-.++.-..+ .=..+|+.+++|-....+ -....
T Consensus 232 ~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~----~e~a~ 307 (507)
T 3u0r_A 232 PSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGD----MEKLE 307 (507)
T ss_dssp SSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCC----CTTHH
T ss_pred CcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCc----cchHH
Confidence 24567888888888766642 22223344444444555566655433 566889999998753211 23333
Q ss_pred HHHHHHHHhcChhhHhhcccCccc
Q 039448 462 ECVGSAVGSMGPETFLCLLPLKLE 485 (1276)
Q Consensus 462 ~~iGaAi~amGPe~vL~~lPLnl~ 485 (1276)
+++-+.. +.++..+|+...
T Consensus 308 ~~l~~iy-----~~L~~ymP~~p~ 326 (507)
T 3u0r_A 308 TNLRKLF-----DKLLEYMPLPPE 326 (507)
T ss_dssp HHHHHHH-----HHHHTTSCCCC-
T ss_pred HHHHHHH-----HHHHHHCCCCcc
Confidence 4443332 567888898664
No 81
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=66.53 E-value=93 Score=35.55 Aligned_cols=95 Identities=22% Similarity=0.229 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHHHH-------HhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHH-HHhh--hhhH
Q 039448 844 ANKRTRNRAYDVLVQIGR-------AFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLA-YEFS--DLVS 913 (1276)
Q Consensus 844 ~N~ktR~~A~~lLv~mg~-------~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl-~ef~--d~i~ 913 (1276)
.+.+.+..|.--|..|-+ -|.+ .+++.-.+.+|..| +..+.+=+..||..|+ |.++ ..++
T Consensus 130 ~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~------~~GL~~Li~vi~~~----~gN~q~Y~L~AL~~LM~~v~Gm~gvvs 199 (339)
T 3dad_A 130 SSGPELRRSLFSLKQIFQEDKDLVPEFVH------SEGLSCLIRVGAAA----DHNYQSYILRALGQLMLFVDGMLGVVA 199 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTHHHHHHH------TTHHHHHHHHHTTS----CHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhcchHHHHHHHH------hccHHHHHHHHHhc----ChHHHHHHHHHHHHHHhccccccchhC
Confidence 455556655555555322 2322 35577777777554 5678888889988775 3321 2232
Q ss_pred HHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhhcC
Q 039448 914 NVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAKSH 949 (1276)
Q Consensus 914 ~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~lp 949 (1276)
+ .+.+.-+..|+.+..|.|+|.+|+.+.|+|..-+
T Consensus 200 ~-~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se 234 (339)
T 3dad_A 200 H-SDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE 234 (339)
T ss_dssp C-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG
T ss_pred C-HHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc
Confidence 1 3455666778889999999999999999998874
No 82
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=66.51 E-value=1.2e+02 Score=32.20 Aligned_cols=201 Identities=13% Similarity=0.013 Sum_probs=116.2
Q ss_pred HhhHhHHHHHHHhhcCCCccccccHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCC
Q 039448 639 SSARELLSILSRIFLESAKDEGGCLQSTIGDFASIADKEIVTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNES 718 (1276)
Q Consensus 639 ~~A~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~~l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1276)
.+.+.-++.|+..+....+..|. .++.++..+.+++.+.. |......
T Consensus 19 ~~~~~~i~~L~~~L~~~~~~vr~---~A~~~L~~~~~~~~~~~--------L~~~l~d---------------------- 65 (280)
T 1oyz_A 19 QCKKLNDDELFRLLDDHNSLKRI---SSARVLQLRGGQDAVRL--------AIEFCSD---------------------- 65 (280)
T ss_dssp HHHTSCHHHHHHHTTCSSHHHHH---HHHHHHHHHCCHHHHHH--------HHHHHTC----------------------
T ss_pred HHHHhhHHHHHHHHHcCCHHHHH---HHHHHHHccCCchHHHH--------HHHHHcC----------------------
Confidence 33455678888887654433332 46666666666654433 2222210
Q ss_pred CchhhHhHHHHHHHHHcCCCChhhHHHHHHHHh-hhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCC
Q 039448 719 SPDFMRARLFDLALSLLPGLNAKEIDVLFVAIK-PALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPS 797 (1276)
Q Consensus 719 ~~~~~~~~llDL~~alv~~l~~~~~~~Lf~~~~-~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~ 797 (1276)
+.+..|......+..+-. +.+.+..++..+. ..+.++++.++..|...|..+......+ ..++...|...+.
T Consensus 66 ~~~~vR~~A~~aL~~l~~--~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~- 138 (280)
T 1oyz_A 66 KNYIRRDIGAFILGQIKI--CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAF- 138 (280)
T ss_dssp SSHHHHHHHHHHHHHSCC--CTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHhcc--ccccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhh-
Confidence 122445544444433321 2333445555444 3467888999999999999998643222 2234455555544
Q ss_pred CCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHH
Q 039448 798 CHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQ 877 (1276)
Q Consensus 798 ~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~e 877 (1276)
.+...-|..++..|-.. .. +..+|.++-++++.|...|..|...|-.++. +.+..+.
T Consensus 139 --d~~~~vR~~a~~aL~~~-~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~~- 195 (280)
T 1oyz_A 139 --DKSTNVRRATAFAISVI-ND-----------KATIPLLINLLKDPNGDVRNWAAFAININKY--------DNSDIRD- 195 (280)
T ss_dssp --CSCHHHHHHHHHHHHTC---------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC--------CCHHHHH-
T ss_pred --CCCHHHHHHHHHHHHhc-CC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcc--------CcHHHHH-
Confidence 34456677777766421 11 1245555667789999999999998877642 1123333
Q ss_pred HHHHHhhhccCCChhHHHHHHHHHHHHH
Q 039448 878 FFNMVAGGLAGESPHMISAAVKGLARLA 905 (1276)
Q Consensus 878 f~~mV~aGLaG~tphMiSatI~ALsrLl 905 (1276)
.+...|....+.....++.+|+++-
T Consensus 196 ---~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 196 ---CFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp ---HHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred ---HHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 3344455667888889999998763
No 83
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=62.45 E-value=3.7e+02 Score=35.23 Aligned_cols=295 Identities=13% Similarity=0.112 Sum_probs=151.9
Q ss_pred hhHHHHHHHHHHHhc-cCcccHHHHHHHHHHHHHHhhhhhcC-CCCCchhhhhhHHHhhhhcCChHHHHHhHHHHHHhhH
Q 039448 565 ESFMDLAGVLCSALH-EENDIRGIICSSLQNLIQQNKKTLEG-KNDLSNVVISTASQRAMAHYTTKVATDNLNVLKSSAR 642 (1276)
Q Consensus 565 ~sF~~lA~~L~~~L~-~~~~LR~~Ic~aLr~Li~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~A~~nl~~L~~~A~ 642 (1276)
+.|+.+-..|-..|. ++|.+....|.||+.|+++-...... .. .++..|..
T Consensus 536 ~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~---------------------------~e~~p~~~ 588 (1023)
T 4hat_C 536 NFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQP---------------------------RESEPFIQ 588 (1023)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCT---------------------------TCSSCHHH
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCC---------------------------CCCchhHH
Confidence 344543333444453 56889999999999999874322110 00 01122344
Q ss_pred hHHHHHHHhhcCCCccccccHHHHHHHhhccCCHHH-HHHHHHHHHHHHHHHHHHhcccccccCCCcccccCCCCCCCch
Q 039448 643 ELLSILSRIFLESAKDEGGCLQSTIGDFASIADKEI-VTRLFKRTMHRLLEATQEAGKTKSTRKSNSMQIDDSSNESSPD 721 (1276)
Q Consensus 643 n~L~vLfNvy~~~~~~~~~~~~~tI~ay~sI~~~~~-l~~~f~~~~~kL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 721 (1276)
.++..+..++..-.+.....+.++|...++-.+.+. ..+++...+..+.+..+.-..+ ...... +- .+. ...
T Consensus 589 ~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~-~~~~~~-~~-~d~----~~~ 661 (1023)
T 4hat_C 589 TIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQ-STANPT-LL-LDS----ETV 661 (1023)
T ss_dssp HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHH-HHHCTT-GG-GCH----HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHH-HhcCch-hh-cCH----HHH
Confidence 555555565554445555667799999998877554 5556655555544443221100 000000 00 000 001
Q ss_pred hhHhHHHHHHHHHcCCCChh---hH-------HHHHHHHhhhh----cC------Cc------hhhhhHHHHHHHHHHhc
Q 039448 722 FMRARLFDLALSLLPGLNAK---EI-------DVLFVAIKPAL----QD------DE------GLIQKKAYKVLSTILRK 775 (1276)
Q Consensus 722 ~~~~~llDL~~alv~~l~~~---~~-------~~Lf~~~~~~l----~~------~d------~~~QKKAYk~L~~i~~~ 775 (1276)
..-..++....++...+... .+ -.+|+.....+ .. +. ..+.|-.-|+++..+..
T Consensus 662 ~~l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~ 741 (1023)
T 4hat_C 662 KIIANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISK 741 (1023)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 12233444333333222221 12 22233222211 10 00 12223334555554443
Q ss_pred Cc--chhh-hhHHHHHHHHHhhCCCCCccchHH-HHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhh-------hh
Q 039448 776 CD--GFLS-SRLEELLGLMIEVLPSCHFSAKRH-RLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALK-------EA 844 (1276)
Q Consensus 776 ~~--~f~~-~~~~el~~~L~~~~~~~~~~ak~~-RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~K-------e~ 844 (1276)
+. .++. .-+..|.+.+++.-....+.+|-+ =|.|...+|..+-.. ..+.++.++--+.-||= +.
T Consensus 742 ~~~~~~~~~~~~~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~-----~~~~~~~il~~vf~~Tl~mi~~~~~~ 816 (1023)
T 4hat_C 742 ARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHM-----IPQGVILILQSVFECTLDMINKDFTE 816 (1023)
T ss_dssp CSCHHHHHHHTHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGG-----CHHHHHHHHHHHHHHHHHHHSSCSSS
T ss_pred CCCHHHHHHHhHHHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHh-----hhhhhHHHHHHHHHHHHHHHhccccc
Confidence 32 2323 345677777777655555555544 456667777654322 24567777777777774 57
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHH
Q 039448 845 NKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVK 899 (1276)
Q Consensus 845 N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ 899 (1276)
+-.+|..=|.||..+.+.+=...-.-+++.+..++..+.-|+--. -.-++.+.+
T Consensus 817 ~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~~~~~~~~a~~h~-~r~~~~~~l 870 (1023)
T 4hat_C 817 YPEHRVEFYKLLKVINEKSFAAFLELPPAAFKLFVDAICWAFKHN-NRDVEVNGL 870 (1023)
T ss_dssp SHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHHHHHHHHHHHTCC-CHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHHHHHHHHHHcCCC-chHHHHHHH
Confidence 789999999999999876522111123566777888777787764 334444444
No 84
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=61.01 E-value=64 Score=34.07 Aligned_cols=116 Identities=20% Similarity=0.282 Sum_probs=0.0
Q ss_pred HHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccchHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHH
Q 039448 768 VLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKR 847 (1276)
Q Consensus 768 ~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~k 847 (1276)
+|++|+......+..-+.+|..++. +.+ +-+||.+|..+-...... ..++..++|-.+--+-|-|+-
T Consensus 130 aLeeIaranP~l~~~v~rdi~smlt-skd------~~Dkl~aLnFi~alGen~------~~yv~PfLprL~aLL~D~dei 196 (253)
T 2db0_A 130 ALEEIAKANPMLMASIVRDFMSMLS-SKN------REDKLTALNFIEAMGENS------FKYVNPFLPRIINLLHDGDEI 196 (253)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTS-CSS------HHHHHHHHHHHHTCCTTT------HHHHGGGHHHHHGGGGCSSHH
T ss_pred HHHHHHHhChHHHHHHHHHHHHHhc-CCC------hHHHHHHHHHHHHHhccC------ccccCcchHHHHHHHcCcchh
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHH
Q 039448 848 TRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLA 905 (1276)
Q Consensus 848 tR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl 905 (1276)
.|..|.+.|+.++. ....+...+.-..+-+--.|....=.-..||+||+
T Consensus 197 VRaSaVEtL~~lA~---------~npklRkii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 197 VRASAVEALVHLAT---------LNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHHHHHHHHHT---------SCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH---------cCHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
No 85
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=60.73 E-value=3.9e+02 Score=34.95 Aligned_cols=405 Identities=9% Similarity=0.043 Sum_probs=188.5
Q ss_pred hhhhhHHhhccCCCChHHhHHHHHHHHHHHHHHhhCCCCCChHh----HHHHHHhhhhhhhCCCCCCCCchhHHHHHHHh
Q 039448 18 VDLCSSILSRFSSSAQEEHQHLCAAIGAMSQELKDQNLPLTPIS----YFGATCSSLDRLLSSPDPDRSSHIIGSLSTIL 93 (1276)
Q Consensus 18 ~d~~~~i~~r~~~S~~~~~k~~~avLaAv~e~i~~q~~~~t~t~----YFaAlms~L~~~~~~~~~~~~~~~~~a~lyLL 93 (1276)
+++...+-.-+..+....|+-.|-++++| | .|.+..|.+ .+.-+...|..+...+ . .++....=...+
T Consensus 507 ~~l~~~~e~L~~~~dk~~qr~aaEi~aGl---l--~gsK~w~~~~~~~~w~~l~p~l~~~l~~~-l--t~et~~~W~~~i 578 (997)
T 1vsy_5 507 SDLFELCESYYNKDDKASMIMSVEIVAGL---V--CGSKFMSVSDLDKRDTFIENFLAKCLDYE-L--NHDAFEIWSTLA 578 (997)
T ss_dssp GGHHHHHHHTCCSSCHHHHHHHHHHHHHH---S--SCCSSCCTTTHHHHHHHHHHHHHHHHSSC-C--CTTHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH---H--hccCCCCHHHHHHHHHHHHHHHHHHHhcc-C--CchhHHHHHHHH
Confidence 55555554433333333444446677776 4 354444443 3334555555554321 1 234444444444
Q ss_pred hhhccCcChHHHhhhhhhHHHHHHHH---hhhcCCCchhHHHHHHHHHHHHhccCCCCCcc--hhhHHHHHHhhccCCch
Q 039448 94 SLLLPKISVAVLKKKGDFLTDLVVRV---VRLSSVTAGAVASGLTSLSRLLTGRGRVNWSD--VSQLYGVVLAFMTDSRL 168 (1276)
Q Consensus 94 ~lv~p~vP~~vLr~kf~~~~~~l~~~---l~~~~~~~~~lRs~i~CL~~LL~aqd~~~W~~--~~~~~~~LL~f~~d~RP 168 (1276)
..++-... -.++..+.+.|+.. +..++.++-..-+-+.+|...|..+ .|.. ..+.+.-++ --|+=-
T Consensus 579 ~~~~~~~D----prR~~~L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~---~wr~~~~~~~l~~~~--l~h~y~ 649 (997)
T 1vsy_5 579 WWLPAVVD----LRRSKTFFCHFINADGMFDRESDAATHQTSKIYMLRSILMSM---EFRAPDVGKLFDELV--FDHPYD 649 (997)
T ss_dssp HHHHHHSC----GGGCHHHHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHH---TTSSCCCHHHHHHCC--SCCSCH
T ss_pred HHHhcCCC----hhhhHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHh---ccccccHHHHHHHHH--hCCChH
Confidence 44432222 13555555555221 1112223323334555555555555 3532 345677666 234445
Q ss_pred hHHHHHHHHHHHHHhccCCCCCc-c------------------------chhHHHHHHHHHHHHHhCCCCCCcCCCCcch
Q 039448 169 KVRRQSHLCVREILLSLQGTLVL-A------------------------PASEAITNMFEKFLLLAGGSNTSADEKPKGA 223 (1276)
Q Consensus 169 KVRK~Aq~av~~IL~~~~~~p~~-h------------------------pas~~~a~~~~~~l~~~~~s~~~~~~~~~~~ 223 (1276)
-||.+--..++.+...-- .|.. | ...+.+.+.+. .++...+..+....+....
T Consensus 650 ~VRe~Ig~~L~~i~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~-~l~~~~~~~~~~~~~~~~~ 727 (997)
T 1vsy_5 650 QVRQAVAKLLTTLVQNQS-NPSISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFE-IIKNLEDSVVGLNPQQFIK 727 (997)
T ss_dssp HHHHHHHHHHHHHHHTSC-CCCBSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHH-HHTGGGGTTSSCCSTTTTT
T ss_pred HHHHHHHHHHHHHHHhhc-ccCCCCHHHHHHhhccccccccCccccCcchHHHHHHHHHH-HHHHhhhcccccCccccch
Confidence 588877777777766321 1100 0 01111222221 1111000000000110011
Q ss_pred -hHHHHHHHHHHhhccCCCchhHHHHHHHHH--------HhhccCch-hHHHH-HHHHHHHHhcCCCCCCCHHHHHHHHH
Q 039448 224 -QEVLYVLDALKECLPLMSTKYTAVILKYFK--------TLLELRQP-LVTRR-VTDALNVICLHPTLEVSAEALLDLLC 292 (1276)
Q Consensus 224 -~~~lh~L~lLk~~l~~~~~~~~~~i~~~ll--------~Ll~l~n~-~lt~~-~~~~~~~lf~~~~~~l~~~~~~~li~ 292 (1276)
....++-++++-+...+.......+.+.+. .+++..+. =|... |..+|..|-..+ ++++.+..+|.
T Consensus 728 s~y~~~~kTvl~wl~~~l~~~~~~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~---~~~~~~~~~l~ 804 (997)
T 1vsy_5 728 TDYFYRTSTIFYWIKEMARGPNKVLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMP---IRKNHVAAIVD 804 (997)
T ss_dssp SHHHHHHHHHHHHHHHHSSGGGHHHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSC---CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCccchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCC---CCHHHHHHHHH
Confidence 122223344444444444443333333333 33344433 34444 556665554333 46777888999
Q ss_pred HhcccCCCCCCchhhHHHHH--HHHHHH-HHHHHhcCHhHHhhhhhHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHhh
Q 039448 293 SLALSVSTNETSADAMTFTA--RLLNVG-MIKIYSINREICSTKLPIVFNALKDILASEH-EEAIFAATEALKNLINACI 368 (1276)
Q Consensus 293 aL~~~~~~~~~~~~~l~~~~--~vl~~a-~~~l~~~~~~~c~~~LP~~f~~~~~~l~S~~-~~v~~~as~~L~~li~~ci 368 (1276)
+|...... +..| +..+ ..++.- +.++.-+++ ..-+++++++..+|..+. -|||..|+.+|..+| +|.
T Consensus 805 ~l~~~~~~---s~sW-~R~~~L~~lq~~~f~n~f~l~~----~~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll-~c~ 875 (997)
T 1vsy_5 805 YVCSSNVA---LSSN-QTKLQLAFIQHFLSAELLQLTE----EEKNKILEFVVSNLYNEQFVEVRVRAASILSDIV-HNW 875 (997)
T ss_dssp HSSCTTTT---SCSS-SHHHHHHHHHHHHHHHTTTSCT----THHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHH-HSC
T ss_pred HHHHHHhc---CCcH-HHHHHHHHHHHHHHHHHHHcCH----HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH-HcC
Confidence 98664431 2234 3332 222221 122333333 233688999999999999 999999999999988 576
Q ss_pred -chhHHhhhcccccccCCCcCCCChHHHHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHhhcccc--hhhHHHHHHHHHh
Q 039448 369 -DESLIKQGVDQITNVNSDARKSGPTVIEKICATVESLLDYHYSAVWDMAFQIVSTMFDKLGTYS--SYFMRGALKNLAD 445 (1276)
Q Consensus 369 -~~~~~~~~v~~~~~~~~~~~~~~~~~i~~i~~~~~~~L~~~y~~aw~~vL~vl~~lf~~lg~~~--~~~l~~~L~~l~~ 445 (1276)
+......-+....+. -......+-+.+ ...+.+.-|+. -|| -++++....-+.. ++.|+++|..|+.
T Consensus 876 ~~~~~~~~li~~f~~~--~~~~~~~~~~~~---~~~~~~~~rH~----aVL-gL~AlV~a~Py~vP~P~w~P~~l~~La~ 945 (997)
T 1vsy_5 876 KEEQPLLSLIERFAKG--LDVNKYTSKERQ---KLSKTDIKIHG----NVL-GLGAIISAFPYVFPLPPWIPKNLSNLSS 945 (997)
T ss_dssp CSHHHHHHHHHHHTTS--STTTSSCHHHHH---HHHHHCHHHHH----HHH-HHHHHHTTCSCCSSCCTHHHHHHHHHHT
T ss_pred CchhhHHHHHHHHHHH--Hhhccccccccc---ccchHHHHHHH----HHH-HHHHHHhhCCCCCCCCcccHHHHHHHHH
Confidence 522221111111100 000001111111 11122222221 233 3567777777777 5789999999987
Q ss_pred hhcCCCCCCcchhHHHHHHHH
Q 039448 446 MQNLPDEDFPYRKQLHECVGS 466 (1276)
Q Consensus 446 lr~~~~~~f~~~~~ld~~iGa 466 (1276)
.-+ +. -+-+..+..+++-
T Consensus 946 ~~~--~~-~~i~~tvk~tlse 963 (997)
T 1vsy_5 946 WAR--TS-GMTGNAAKNTISE 963 (997)
T ss_dssp TSS--SC-SSHHHHTHHHHHH
T ss_pred HhC--CC-CchHHHHHHHHHH
Confidence 544 22 3566667777664
No 86
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=45.87 E-value=2.3e+02 Score=32.54 Aligned_cols=155 Identities=12% Similarity=0.098 Sum_probs=100.5
Q ss_pred HhHHHHHHHHHcCCCC--hhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCcc
Q 039448 724 RARLFDLALSLLPGLN--AKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFS 801 (1276)
Q Consensus 724 ~~~llDL~~alv~~l~--~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~ 801 (1276)
+..+--|+..|..+-+ ......+|--+...++++|..+.|=.|=.+..+....+.-+ = +.+.|...+.+-..-
T Consensus 45 ~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~~e~i-L----v~Nsl~kDl~~~N~~ 119 (355)
T 3tjz_B 45 AHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIAEDVI-I----VTSSLTKDMTGKEDS 119 (355)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTSSCGG-G----GHHHHHHHHHSSCHH
T ss_pred HHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHH-H----HHHHHHhhcCCCcHh
Confidence 3468888888887744 33455566556678889999999999999988877532221 1 233334444433334
Q ss_pred chHHHHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHH
Q 039448 802 AKRHRLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNM 881 (1276)
Q Consensus 802 ak~~RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~m 881 (1276)
-|..=|++|-.+. . .+++..+.+.+.=|..+.|.-.|++|-=... +.+.. .++-+..|+.-
T Consensus 120 iR~lALRtL~~I~------~-----~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~---kL~~~-----~pe~v~~~~~~ 180 (355)
T 3tjz_B 120 YRGPAVRALCQIT------D-----STMLQAIERYMKQAIVDKVPSVSSSALVSSL---HLLKC-----SFDVVKRWVNE 180 (355)
T ss_dssp HHHHHHHHHHHHC------C-----TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHH---HHTTT-----CHHHHHTTHHH
T ss_pred HHHHHHHHHhcCC------C-----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH---HHhcc-----CHHHHHHHHHH
Confidence 4555555555542 1 2578889999999999999999999864433 33322 35667788887
Q ss_pred HhhhccCCChhHHHHHHHHHH
Q 039448 882 VAGGLAGESPHMISAAVKGLA 902 (1276)
Q Consensus 882 V~aGLaG~tphMiSatI~ALs 902 (1276)
+..-+...+|..+..++.+|.
T Consensus 181 l~~ll~d~n~~V~~~Al~lL~ 201 (355)
T 3tjz_B 181 AQEAASSDNIMVQYHALGLLY 201 (355)
T ss_dssp HHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHhcCCCccHHHHHHHHHH
Confidence 777777766655655555444
No 87
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=44.93 E-value=5.9e+02 Score=33.35 Aligned_cols=161 Identities=10% Similarity=0.107 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhccCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhh
Q 039448 806 RLDCLYFIIAHVSKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGG 885 (1276)
Q Consensus 806 RL~cL~~lv~~l~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aG 885 (1276)
=+-++..+|...|..... -..+.+..+...+.=++...++.. -.-.|..+|+. +.++++..+...+ -|
T Consensus 415 a~La~gslV~k~c~~~~~-c~~~~v~~i~~~l~~~~~~~~~~~---~~~~LkaLGN~-------g~p~~l~~l~~~l-~~ 482 (1056)
T 1lsh_A 415 AVLGYGSLVFRYCANTVS-CPDELLQPLHDLLSQSSDRAKEEE---IVLALKALGNA-------GQPNSIKKIQRFL-PG 482 (1056)
T ss_dssp HHHHHHHHHHHHHTTCSS-CCGGGTHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH-------TCGGGHHHHHTTS-TT
T ss_pred HHHHHHHHHHHHhccCCC-CCHHHHHHHHHHHHHHHhcCChHH---HHHHHHHhhcc-------CChhHHHHHHHhh-cC
Confidence 355566777766654210 001223333333222222223333 34445566663 1245666444443 24
Q ss_pred c---cCCCh-hHHHHHHHHHHHHHHHhhhhhHH-HHHhhhH-----------HHHHhc-cCCHHHHHHHHHHHHHHHhhc
Q 039448 886 L---AGESP-HMISAAVKGLARLAYEFSDLVSN-VYKLLPS-----------TFLLLQ-RKNREIIKANLGLLKVLVAKS 948 (1276)
Q Consensus 886 L---aG~tp-hMiSatI~ALsrLl~ef~d~i~~-~~~ll~~-----------v~llL~-s~~REIvKsaLgFvKV~v~~l 948 (1276)
. +.+.| ....++|.||.++.-.+.+.+.. +.+++.+ +..+|. .++..++.....+++ .=
T Consensus 483 ~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~~~l~~ia~~l~----~E 558 (1056)
T 1lsh_A 483 QGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVALVSMVAVRLR----RE 558 (1056)
T ss_dssp SSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCHHHHHHHHHHHT----TC
T ss_pred ccccccccchHHHHHHHHHHHHhhhhchHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHh----hC
Confidence 3 22223 45579999999887555443332 3344321 122332 244444433333322 22
Q ss_pred ChhHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 039448 949 HAEGLQIHLASMVEGLLKWQDDTKNQFKSKIKLL 982 (1276)
Q Consensus 949 p~~~l~~~L~~lv~~Ll~ws~d~k~hfR~KVr~I 982 (1276)
|...|..++-+.|.+|.+...-+..+++.+.++.
T Consensus 559 ~~~QV~sfv~S~l~sla~s~~P~~~~la~~~~~a 592 (1056)
T 1lsh_A 559 PNLQVASFVYSQMRSLSRSSNPEFRDVAAACSVA 592 (1056)
T ss_dssp SCHHHHHHHHHHHHHHTTCCSGGGHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 3455555555555555555444444444333333
No 88
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=40.97 E-value=11 Score=25.83 Aligned_cols=15 Identities=40% Similarity=0.600 Sum_probs=12.8
Q ss_pred HHHHHHHhcCHHHHH
Q 039448 982 LLEMLVKKCGLDAVK 996 (1276)
Q Consensus 982 IlerLIRKfG~e~V~ 996 (1276)
+|-+||+|||..+|.
T Consensus 2 lfgklikkfgrkais 16 (26)
T 2g9p_A 2 LFGKLIKKFGRKAIS 16 (26)
T ss_dssp HHHHHHHHHTSHHHH
T ss_pred cHHHHHHHHhHHHHH
Confidence 688999999988774
No 89
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=39.56 E-value=56 Score=38.06 Aligned_cols=94 Identities=16% Similarity=0.210 Sum_probs=59.4
Q ss_pred HHHhhhhhhHHHHHHHHhhhcCCCchhHHHHHHHHHHHHhccCCCCCcchhhHHHHHHhhccCCch---h-----HHHHH
Q 039448 103 AVLKKKGDFLTDLVVRVVRLSSVTAGAVASGLTSLSRLLTGRGRVNWSDVSQLYGVVLAFMTDSRL---K-----VRRQS 174 (1276)
Q Consensus 103 ~vLr~kf~~~~~~l~~~l~~~~~~~~~lRs~i~CL~~LL~aqd~~~W~~~~~~~~~LL~f~~d~RP---K-----VRK~A 174 (1276)
+.|..--..++..|..++..+...++.+=.+|+||+.|.+... +| ...++.+|+.|....-| | |||..
T Consensus 217 ~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~RP--~~--~~rIl~aL~~l~~n~p~t~sk~qvkSv~KtL 292 (386)
T 3o2t_A 217 NVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQRP--MF--MSEVIQAYETLHANLPPTLAKSQVSSVRKNL 292 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHSG--GG--HHHHHHHHHHHHHCC----CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhcH--HH--HHHHHHHHHhhcCCCCccHHHHHHHHHHHHH
Confidence 5555666777888888888766667788889999999876543 22 23466666666542211 1 55555
Q ss_pred HHHHHHHHhccCCCCCccchhHHHHHHHHH
Q 039448 175 HLCVREILLSLQGTLVLAPASEAITNMFEK 204 (1276)
Q Consensus 175 q~av~~IL~~~~~~p~~hpas~~~a~~~~~ 204 (1276)
.-.+..+|+ .|..+|....+...+.+
T Consensus 293 R~~Ll~lLK----~p~s~~~~~~I~~~L~~ 318 (386)
T 3o2t_A 293 KLHLLSVLK----HPASLEFQAQITTLLVD 318 (386)
T ss_dssp HHHHHHHHT----SGGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHc----CCCchhhHHHHHHHHHH
Confidence 555555554 45667888888877766
No 90
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=36.07 E-value=4.2e+02 Score=31.34 Aligned_cols=166 Identities=14% Similarity=0.080 Sum_probs=85.4
Q ss_pred hhHHHHHHhhccCCchhHHHHHHHHHHHHHhccCCCCCccchhHHHHHHHHHHHHHhCCCCCCcCCCCcchhHHHHHHHH
Q 039448 153 SQLYGVVLAFMTDSRLKVRRQSHLCVREILLSLQGTLVLAPASEAITNMFEKFLLLAGGSNTSADEKPKGAQEVLYVLDA 232 (1276)
Q Consensus 153 ~~~~~~LL~f~~d~RPKVRK~Aq~av~~IL~~~~~~p~~hpas~~~a~~~~~~l~~~~~s~~~~~~~~~~~~~~lh~L~l 232 (1276)
.+.++.+-.-.++.||-+||+........+- ....|-.-.-+-+++-..+ .|.. ..-.--|-.=+
T Consensus 183 ktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~----e~e~~nGIaeLLeilgSIi---nGfa--------~PLKeehk~fl 247 (449)
T 2npp_B 183 KTTLHRIYGKFLGLRAYIRKQINNIFYRFIY----ETEHHNGIAELLEILGSII---NGFA--------LPLKEEHKIFL 247 (449)
T ss_dssp HHHHHHHHHSCTTTHHHHHHHHHHHHHHHHH----TCSCCSCHHHHHHHHHHHH---SSCC--------SSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----ccCCCCCHHHHHHHHHHHH---hccC--------CCCcHHHHHHH
Confidence 3456666666678888888775444333332 2222322222222222222 1111 00012355555
Q ss_pred HHhhccCCCchhHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCCCchhhHHHHH
Q 039448 233 LKECLPLMSTKYTAVILKYFKTLLELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTA 312 (1276)
Q Consensus 233 Lk~~l~~~~~~~~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~ 312 (1276)
.+.++|....+.. ..=++-|+.|+.|-++- ...+ ...+|..|.-|=|-++ ++--+.++
T Consensus 248 ~~vLlPLhk~~~l-----------~~y~~qL~ycv~qf~eK-----Dp~L----~~~vi~~LLk~WP~tn-s~KevlFL- 305 (449)
T 2npp_B 248 LKVLLPLHKVKSL-----------SVYHPQLAYCVVQFLEK-----DSTL----TEPVVMALLKYWPKTH-SPKEVMFL- 305 (449)
T ss_dssp HHTTGGGGGSSCG-----------GGTHHHHHHHHHHHHHH-----CGGG----HHHHHHHHHHTCCSSC-HHHHHHHH-
T ss_pred HHHHHHHHccchh-----------HHhHHHHHHHHHHHHhc-----CcHh----HHHHHHHHHHhCCCCC-chHHHHHH-
Confidence 6666776544321 22344555555555432 2223 3334444444555554 33334444
Q ss_pred HHHHHHHHHHHhcCHhHHhhhhhHHHHHHHHHhcCCchhHHHHHHH
Q 039448 313 RLLNVGMIKIYSINREICSTKLPIVFNALKDILASEHEEAIFAATE 358 (1276)
Q Consensus 313 ~vl~~a~~~l~~~~~~~c~~~LP~~f~~~~~~l~S~~~~v~~~as~ 358 (1276)
.-++ ..+-.++|..-..-.+.+|..+..++.|+|-+|...|-.
T Consensus 306 ~ele---eile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~ 348 (449)
T 2npp_B 306 NELE---EILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALY 348 (449)
T ss_dssp HHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHG
T ss_pred HHHH---HHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 2232 333455777666677889999999999999999876643
No 91
>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5
Probab=31.90 E-value=9e+02 Score=30.69 Aligned_cols=206 Identities=12% Similarity=0.072 Sum_probs=134.5
Q ss_pred CChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHh----c-CcchhhhhHHHHHHHHHhhCCCCCccchHHHHH-HHH
Q 039448 738 LNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILR----K-CDGFLSSRLEELLGLMIEVLPSCHFSAKRHRLD-CLY 811 (1276)
Q Consensus 738 l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~----~-~~~f~~~~~~el~~~L~~~~~~~~~~ak~~RL~-cL~ 811 (1276)
-.++++..+|+.+...+++ +. |-+.|+-+.+++- . +.+-...+++.+.+.+..=......+..-.-|. .++
T Consensus 225 ft~~q~~~iFt~~lr~l~~-~~--~~~~~~~~a~~IV~sl~~~~~~~~~~~L~~Li~~iesy~HPSN~G~Wt~~L~~Fl~ 301 (799)
T 1vsy_4 225 FTDDQMTFMFNRLQGHLRT-DG--QIHSYSRTVKPFVYAINGSKKDRFFEKLVSLAKAIETFIHPSNNGFWTKPNAKFVH 301 (799)
T ss_dssp CCHHHHHHHHHHHHHHHHT-TC--CCSSHHHHHHHHHTTCCTTSCTTTHHHHHHHHHHHHHHHSTTCCSTTHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccC-cC--CccchHHHHHHHHHHcCCCCchHHHHHHHHHHHHHhcccCCCCCCccHHHHHHHHH
Confidence 4567789999888887772 33 3345655666553 1 123455677777777766555555555555553 334
Q ss_pred HHHHhc---------------cCCC--hHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCC-CCcc
Q 039448 812 FIIAHV---------------SKDD--SEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENG-GGKE 873 (1276)
Q Consensus 812 ~lv~~l---------------~~~~--~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~-~~~~ 873 (1276)
+++... |+.. .++.+..|+..++|=+.++.=.-|.++.+.+...|..++.-- | +.+-
T Consensus 302 ~L~~~f~kR~~~Er~~~~~~~p~~~~Lt~~~~~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~-----P~~~~l 376 (799)
T 1vsy_4 302 AFIKSYHGRVKYEEDICARGVTNGICLTSFCHEEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELD-----PSNAYL 376 (799)
T ss_dssp HHHHHHHHHHHHHTTTTTTTCCCSSSCCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTC-----CTTHHH
T ss_pred HHHHHHHHHHHHhhccccCCCchhhcCCHHHHHHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcC-----CCccce
Confidence 444321 1111 123567899999999999985557888999999999998721 1 1145
Q ss_pred cHHHHHHHHhhhccC---CChhHHHHHHHHHHHHHHHh---hhhhHHHHHhhhHHHHHhccCCHHHHHHHHHHHHHHHhh
Q 039448 874 NLYQFFNMVAGGLAG---ESPHMISAAVKGLARLAYEF---SDLVSNVYKLLPSTFLLLQRKNREIIKANLGLLKVLVAK 947 (1276)
Q Consensus 874 ~l~ef~~mV~aGLaG---~tphMiSatI~ALsrLl~ef---~d~i~~~~~ll~~v~llL~s~~REIvKsaLgFvKV~v~~ 947 (1276)
-+...+.-++.+|.| ..||=..+++.+|+.++.-. +..-..+..+|..++-=+-.|+.+=--.++.|+-+++..
T Consensus 377 VlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s~ 456 (799)
T 1vsy_4 377 IYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAAF 456 (799)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHT
T ss_pred ehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHh
Confidence 677777899999988 77999999999887776543 112224445555545555566666666689999998888
Q ss_pred cChh
Q 039448 948 SHAE 951 (1276)
Q Consensus 948 lp~~ 951 (1276)
+|-.
T Consensus 457 ipi~ 460 (799)
T 1vsy_4 457 IPIQ 460 (799)
T ss_dssp SCBC
T ss_pred cccc
Confidence 7743
No 92
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=28.70 E-value=6e+02 Score=27.64 Aligned_cols=137 Identities=12% Similarity=0.080 Sum_probs=84.9
Q ss_pred hHhHHHHHHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHHHHHHHHhhCCCCCccc
Q 039448 723 MRARLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEELLGLMIEVLPSCHFSA 802 (1276)
Q Consensus 723 ~~~~llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~el~~~L~~~~~~~~~~a 802 (1276)
.+...|-=+.-++-.-+.+-+..+|..+.++..+.+..++|-.-.+|+++|.....++...++.|..++.+ -.++.
T Consensus 31 ~kl~~L~qa~el~~~~dp~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d----~d~~V 106 (257)
T 3gs3_A 31 TKCELLAKVQETVLGSCAELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRD----NSAQV 106 (257)
T ss_dssp HHHHHHHHHHHHHTTTTGGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTC----SCHHH
T ss_pred HHHHHHHHHHHHHHccCHhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCHHH
Confidence 44444544445455557778999999888877778889999999999999987666666666666555432 23344
Q ss_pred hHHHHHHHHHHH----HhccCCCh----HHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Q 039448 803 KRHRLDCLYFII----AHVSKDDS----EQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAF 863 (1276)
Q Consensus 803 k~~RL~cL~~lv----~~l~~~~~----~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~ 863 (1276)
.|.=+.|...+. .++++... .++.=+.+..+=..|+=-....|..+|-.|+..+..+-...
T Consensus 107 ~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~q 175 (257)
T 3gs3_A 107 IKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVVVLQ 175 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHhh
Confidence 444444443333 23444332 11122233333333333336689999999999888876544
No 93
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=28.09 E-value=8.5e+02 Score=29.18 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=38.5
Q ss_pred HHHHhhhhCCCCCCcchhhhHHHHHHHHHHHhcc-CcccHHHHHHHHHHHHHHh
Q 039448 547 YSLWSLLPSFCNYPVDTAESFMDLAGVLCSALHE-ENDIRGIICSSLQNLIQQN 599 (1276)
Q Consensus 547 ~QlWsLLPgFC~~P~D~~~sF~~lA~~L~~~L~~-~~~LR~~Ic~aLr~Li~~n 599 (1276)
-|--.-||.||.. +.-+.+|-+|+++|.. .+.=+..|=++|..|+..+
T Consensus 83 ~qaik~Lp~~ck~-----~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~D 131 (507)
T 3u0r_A 83 RQAIKELPQFATG-----ENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMD 131 (507)
T ss_dssp HHHHHHGGGGCCT-----TCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhHHHhhh-----hhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcC
Confidence 3666779999965 4467899999999984 6788888999999888764
No 94
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=26.19 E-value=90 Score=29.55 Aligned_cols=82 Identities=13% Similarity=0.118 Sum_probs=54.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhhhccCCChhHHHHHHHHHHHHHHHhhhhhHH
Q 039448 835 TEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAGGLAGESPHMISAAVKGLARLAYEFSDLVSN 914 (1276)
Q Consensus 835 pEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~aGLaG~tphMiSatI~ALsrLl~ef~d~i~~ 914 (1276)
+.++-++++.|...|..|...|-.++. ...+..+ ...|...++....+++.||+++- +
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~----------~~a~~~L----~~~L~d~~~~VR~~A~~aL~~~~----~---- 102 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQD----------ERAVEPL----IKLLEDDSGFVRSGAARSLEQIG----G---- 102 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCS----------HHHHHHH----HHHHHHCCTHHHHHHHHHHHHHC----S----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCC----------HHHHHHH----HHHHcCCCHHHHHHHHHHHHHhC----c----
Confidence 555666788999999999988876652 2233333 33445567888999999998762 1
Q ss_pred HHHhhhHHHHHhccCCHHHHHHHHH
Q 039448 915 VYKLLPSTFLLLQRKNREIIKANLG 939 (1276)
Q Consensus 915 ~~~ll~~v~llL~s~~REIvKsaLg 939 (1276)
.+.++.+.-+|.+.+.+|..+++.
T Consensus 103 -~~a~~~L~~~l~d~~~~vr~~A~~ 126 (131)
T 1te4_A 103 -ERVRAAMEKLAETGTGFARKVAVN 126 (131)
T ss_dssp -HHHHHHHHHHTTSCCTHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCCHHHHHHHHH
Confidence 123444455677888888777654
No 95
>2ll2_A GAP junction alpha-1 protein; membrane protein; NMR {Homo sapiens}
Probab=31.88 E-value=14 Score=26.27 Aligned_cols=15 Identities=47% Similarity=0.749 Sum_probs=10.7
Q ss_pred cccCCcccccCccCcce
Q 039448 1206 KKASGDVKRKGKLEPYA 1222 (1276)
Q Consensus 1206 KKA~GDvkkkgk~dPYA 1222 (1276)
|+++|-|| ||-|||+
T Consensus 1 K~ikdrvK--Gk~~P~~ 15 (26)
T 2ll2_A 1 KGVKDRVK--GKSDPYH 15 (26)
Confidence 56777775 7778964
No 96
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=25.10 E-value=5.3e+02 Score=31.96 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=67.4
Q ss_pred chhHHHHHHHHHHhhccCchhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHH
Q 039448 242 TKYTAVILKYFKTLLELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIK 321 (1276)
Q Consensus 242 ~~~~~~i~~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~ 321 (1276)
+....+|..+|.+|-+..-.==.+.|...|.++-..-+..+.+..+..+|..|.... .+.+.+-.+...| ..
T Consensus 17 qs~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg~~~l~~li~~L~~d~----~D~e~v~~~LetL----~~ 88 (651)
T 3grl_A 17 HTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQAMEHLIHVLQTDR----SDSEIIGYALDTL----YN 88 (651)
T ss_dssp -CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHHHHTHHHHHHHHHSCT----TCHHHHHHHHHHH----HH
T ss_pred CChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhhhhhHHHHHHHHhccc----ccHHHHHHHHHHH----HH
Confidence 345556666667666655445566777777776544344444445666666665542 2222221111111 11
Q ss_pred HHhcCH---------------hHH----hhhhhHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh
Q 039448 322 IYSINR---------------EIC----STKLPIVFNALKDILASEHEEAIFAATEALKNLINAC 367 (1276)
Q Consensus 322 l~~~~~---------------~~c----~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~li~~c 367 (1276)
+-.-+. .++ +-.=|..++.+.++|.++.-.+|..|.++|..|+...
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r 153 (651)
T 3grl_A 89 IISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQL 153 (651)
T ss_dssp HHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHS
T ss_pred HhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcC
Confidence 111110 011 2222777888999999999999999999999987554
No 97
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=25.06 E-value=2.5e+02 Score=27.85 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=42.0
Q ss_pred HHHHHhhHhHHHHHHHhhcCCCccccccHHHHHHHhh-------ccCCHHHHHHHH
Q 039448 635 NVLKSSARELLSILSRIFLESAKDEGGCLQSTIGDFA-------SIADKEIVTRLF 683 (1276)
Q Consensus 635 ~~L~~~A~n~L~vLfNvy~~~~~~~~~~~~~tI~ay~-------sI~~~~~l~~~f 683 (1276)
.+...|++++.+++.++|...+.+.+.-+...++.|- .|-|++.+..+=
T Consensus 77 ~y~~~F~~~l~~~f~~~~~~~d~~~r~k~~rL~~~W~~~~~~~~~vF~~~~l~~i~ 132 (144)
T 1sz9_A 77 PYTIYFSRNLFNLYKRTYLLVDNTTRTKLINMFKLWLNPNDTGLPLFEGSALEKIE 132 (144)
T ss_dssp THHHHHHTTHHHHHHHHHHTSCHHHHHHHHHHHHHHTSGGGCSSCSSCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhCcccCCCCCCCHHHHHHHH
Confidence 4678999999999999999887788888999999998 889998876643
No 98
>3sui_B Transient receptor potential cation channel subfa member 1; calmodulin, calcium-calmodulin, TRPV1, TRPV1 C-terminus, CAL complex, thermosensor; 1.95A {Rattus norvegicus}
Probab=23.33 E-value=24 Score=26.41 Aligned_cols=31 Identities=29% Similarity=0.553 Sum_probs=22.1
Q ss_pred ChhhHhhcccCccccCcccccccc----hhhhhhhc
Q 039448 472 GPETFLCLLPLKLEASDLSEVNVW----LFPILKQY 503 (1276)
Q Consensus 472 GPe~vL~~lPLnl~~~~~~~~RaW----LLPlLr~~ 503 (1276)
|||.+-..+.+.+-.+- --+|-| |.||||+.
T Consensus 1 gpe~ikr~lsfslrsgr-vsgrnwknf~lvpllrd~ 35 (37)
T 3sui_B 1 GPEGVKRTLSFSLRSGR-VSGRNWKNFALVPLLRDA 35 (37)
T ss_pred CchhhccccceEeeccc-cccccccccchhhhhhcc
Confidence 78888777777664322 246778 89999985
No 99
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=22.77 E-value=1.6e+02 Score=34.68 Aligned_cols=134 Identities=13% Similarity=0.155 Sum_probs=76.2
Q ss_pred HhHHHHHHHHHcCCCChhhHHHHHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcc---hhhhh--HHHHHHHHHhhCCCC
Q 039448 724 RARLFDLALSLLPGLNAKEIDVLFVAIKPALQDDEGLIQKKAYKVLSTILRKCDG---FLSSR--LEELLGLMIEVLPSC 798 (1276)
Q Consensus 724 ~~~llDL~~alv~~l~~~~~~~Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~---f~~~~--~~el~~~L~~~~~~~ 798 (1276)
+-..+||++.++.+.+... .++.++...+.+..+..|==+.|+|.-++..... .+..+ .+.+.+.+...+..+
T Consensus 243 ~FPaLDLLRl~v~~p~~~~--~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~l~~~ 320 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSS--DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQA 320 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGG--GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCCCTTC
T ss_pred ccHHHHHHHHHHcCCchHH--HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHHhhhc
Confidence 5569999999998876654 3555555555555577788899999999885431 23332 344555444444444
Q ss_pred Cc-cchHHHHHHHHHHHHhc---cCCChHHHHhhhHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHh
Q 039448 799 HF-SAKRHRLDCLYFIIAHV---SKDDSEQRRSYILSSFLTEIILA---LKEANKRTRNRAYDVLVQIGRAF 863 (1276)
Q Consensus 799 ~~-~ak~~RL~cL~~lv~~l---~~~~~~~~~~~~i~~~lpEiIL~---~Ke~N~ktR~~A~~lLv~mg~~~ 863 (1276)
.. ..+--|++.-..++..- .+...+ .+ +.+.+.|+|-. ..|.-+..=+++|.+|+.+|+.+
T Consensus 321 ~~~~nkNl~IA~ATLllNlAv~~~~~~~~---~e-l~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv 388 (425)
T 3pst_A 321 SAKQSQNLAIAVSTLIFNYSALVTKGNSD---LE-LLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 388 (425)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSCSC---TT-HHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhcccch---HH-HHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHH
Confidence 32 34556666544333211 110000 11 22345555542 13322346689999999999966
No 100
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=21.30 E-value=2.8e+02 Score=26.02 Aligned_cols=86 Identities=12% Similarity=-0.066 Sum_probs=52.3
Q ss_pred HHHHHhhccCchhHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHhcccCCCCCCchhhHHHHHHHHHHHHHHHHhcCHhH
Q 039448 250 KYFKTLLELRQPLVTRRVTDALNVICLHPTLEVSAEALLDLLCSLALSVSTNETSADAMTFTARLLNVGMIKIYSINREI 329 (1276)
Q Consensus 250 ~~ll~Ll~l~n~~lt~~~~~~~~~lf~~~~~~l~~~~~~~li~aL~~~~~~~~~~~~~l~~~~~vl~~a~~~l~~~~~~~ 329 (1276)
+.+..++.-.++.+...+..+|-.+-. .+.+..++..|.+. ...... .+...+..+.
T Consensus 45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~-------~~a~~~L~~~L~d~---~~~VR~----------~A~~aL~~~~--- 101 (131)
T 1te4_A 45 EPLLESLSNEDWRIRGAAAWIIGNFQD-------ERAVEPLIKLLEDD---SGFVRS----------GAARSLEQIG--- 101 (131)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHGGGCS-------HHHHHHHHHHHHHC---CTHHHH----------HHHHHHHHHC---
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHHcCC---CHHHHH----------HHHHHHHHhC---
Confidence 566677777899999998888865431 34455555555331 111111 1222333322
Q ss_pred HhhhhhHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 039448 330 CSTKLPIVFNALKDILASEHEEAIFAATEALKN 362 (1276)
Q Consensus 330 c~~~LP~~f~~~~~~l~S~~~~v~~~as~~L~~ 362 (1276)
-|..+..+..+|.++.+.|+..|..+|..
T Consensus 102 ----~~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 102 ----GERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ----SHHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ----cHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 14556677778888899999999988753
No 101
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=21.24 E-value=5.9e+02 Score=28.34 Aligned_cols=146 Identities=16% Similarity=0.132 Sum_probs=80.1
Q ss_pred hhHhHHHHHHHHHcCCCChhh-------HHHHHHHHhhhhcCC-chhhhhHHHHHHHHHHhcCcc--hhhhhHHHHHHHH
Q 039448 722 FMRARLFDLALSLLPGLNAKE-------IDVLFVAIKPALQDD-EGLIQKKAYKVLSTILRKCDG--FLSSRLEELLGLM 791 (1276)
Q Consensus 722 ~~~~~llDL~~alv~~l~~~~-------~~~Lf~~~~~~l~~~-d~~~QKKAYk~L~~i~~~~~~--f~~~~~~el~~~L 791 (1276)
..+-.++||++.++.+-.... -..++..+...+.++ .+..|==+.|+|.-++....+ .+..+.+.|.+.+
T Consensus 117 ~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~ 196 (304)
T 3ebb_A 117 DIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHA 196 (304)
T ss_dssp TTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHH
T ss_pred HhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHH
Confidence 357789999999986533322 123443444444332 344577788888888774332 4556778888887
Q ss_pred HhhCCCCCccchHHHHHHHHHHHHhc---cCCChHHHHhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC
Q 039448 792 IEVLPSCHFSAKRHRLDCLYFIIAHV---SKDDSEQRRSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEEN 868 (1276)
Q Consensus 792 ~~~~~~~~~~ak~~RL~cL~~lv~~l---~~~~~~~~~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~ 868 (1276)
...+. .+.+--|+++-..++... .+.... +....+-..+..++ - .+ ..-++.|.+|+.+|+.+..
T Consensus 197 ~~~~~---~~nknl~iA~ATl~~NlAv~~~~~~~~-~~~~~ll~~l~~il-~-~~---~d~EalyR~LvALGtL~~~--- 264 (304)
T 3ebb_A 197 IELKS---GSNKNIHIALATLALNYSVCFHKDHNI-EGKAQCLSLISTIL-E-VV---QDLEATFRLLVALGTLISD--- 264 (304)
T ss_dssp HGGGS---SCCHHHHHHHHHHHHHHHHHHHHSCCH-HHHHHHHHHHHHHH-T-TC---CCHHHHHHHHHHHHHHHTT---
T ss_pred HHHhc---CCChhHHHHHHHHHHHHHHHHhhcCCc-hHHHHHHHHHHHHH-h-cc---CCHHHHHHHHHHHHHHHhC---
Confidence 77643 356777777654444221 111111 11122223333322 1 12 2238999999999997743
Q ss_pred CCCcccHHHHHHHH
Q 039448 869 GGGKENLYQFFNMV 882 (1276)
Q Consensus 869 ~~~~~~l~ef~~mV 882 (1276)
...+.++...+
T Consensus 265 ---~~~~~~lak~l 275 (304)
T 3ebb_A 265 ---DSNAVQLAKSL 275 (304)
T ss_dssp ---CHHHHHHHHHT
T ss_pred ---ChhHHHHHHHc
Confidence 23355555443
No 102
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=20.72 E-value=7.4e+02 Score=25.90 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=29.2
Q ss_pred hhhHHHHHHHHHHHh--hhhhH-HHHHHHHHHHHHHHHHhccC
Q 039448 827 SYILSSFLTEIILAL--KEANK-RTRNRAYDVLVQIGRAFGDE 866 (1276)
Q Consensus 827 ~~~i~~~lpEiIL~~--Ke~N~-ktR~~A~~lLv~mg~~~~~~ 866 (1276)
..++..++|=++-|+ |..+. .-|+-|-++|..|++++.+.
T Consensus 82 epYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~ 124 (196)
T 4atg_A 82 DPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRS 124 (196)
T ss_dssp GGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCcc
Confidence 345666666666665 44443 89999999999999999753
No 103
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=20.59 E-value=9.3e+02 Score=27.04 Aligned_cols=191 Identities=17% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHhhhhcCCchhhhhHHHHHHHHHHhcCcchhhhhHHH--HHHHHHhh-CCCCCccchHHHHHHHHHHHHhccCCCh
Q 039448 746 LFVAIKPALQDDEGLIQKKAYKVLSTILRKCDGFLSSRLEE--LLGLMIEV-LPSCHFSAKRHRLDCLYFIIAHVSKDDS 822 (1276)
Q Consensus 746 Lf~~~~~~l~~~d~~~QKKAYk~L~~i~~~~~~f~~~~~~e--l~~~L~~~-~~~~~~~ak~~RL~cL~~lv~~l~~~~~ 822 (1276)
....+...|.+.+..+|..|-..|..|......-....+-+ ....|+.. ..+.....++.=+.+|..|..+ .+
T Consensus 128 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~----~~ 203 (354)
T 3nmw_A 128 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH----CT 203 (354)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT----CH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc----Ch
Q ss_pred HHHHhhhH--HHHHHHHHHHhhhhhHH----HHHHHHHHHHHHHH----------HhccCCCCCCcccHHHHHHHHhhhc
Q 039448 823 EQRRSYIL--SSFLTEIILALKEANKR----TRNRAYDVLVQIGR----------AFGDEENGGGKENLYQFFNMVAGGL 886 (1276)
Q Consensus 823 ~~~~~~~i--~~~lpEiIL~~Ke~N~k----tR~~A~~lLv~mg~----------~~~~~~~~~~~~~l~ef~~mV~aGL 886 (1276)
+ .+..++ .-.||-+|=.++..+.. .++.|--.|-.++. .+.+. ..+..+..-|
T Consensus 204 ~-nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~----------g~i~~Lv~lL 272 (354)
T 3nmw_A 204 E-NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN----------NCLQTLLQHL 272 (354)
T ss_dssp H-HHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT----------THHHHHHHHT
T ss_pred h-hhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHc----------CCHHHHHHHH
Q ss_pred cCCChhHHHHHHHHHHHHHHHhhhhhHHHHHh--hhHHHHHhccCCHHHHHHHHHHHHHHHhhcChh
Q 039448 887 AGESPHMISAAVKGLARLAYEFSDLVSNVYKL--LPSTFLLLQRKNREIIKANLGLLKVLVAKSHAE 951 (1276)
Q Consensus 887 aG~tphMiSatI~ALsrLl~ef~d~i~~~~~l--l~~v~llL~s~~REIvKsaLgFvKV~v~~lp~~ 951 (1276)
...++..+..++.||+.|.+...+....+.+. ++..+-+|.+++.+|.+.+.+-+.-+...-|..
T Consensus 273 ~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 273 KSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp TCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred cCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
No 104
>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}
Probab=20.07 E-value=1.7e+03 Score=29.92 Aligned_cols=107 Identities=16% Similarity=0.120 Sum_probs=59.6
Q ss_pred HhhhHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCcccHHHHHHHHhh---hccCCChhHHHHHHHHHH
Q 039448 826 RSYILSSFLTEIILALKEANKRTRNRAYDVLVQIGRAFGDEENGGGKENLYQFFNMVAG---GLAGESPHMISAAVKGLA 902 (1276)
Q Consensus 826 ~~~~i~~~lpEiIL~~Ke~N~ktR~~A~~lLv~mg~~~~~~~~~~~~~~l~ef~~mV~a---GLaG~tphMiSatI~ALs 902 (1276)
+.+.+.++|.-+ |+ .|...=.+|.++|..++... ...+..|=.++.+ .+..-+++-|--..--|+
T Consensus 436 qqeVl~~Lv~hi--~s--g~~~eVd~ALdvL~~L~~~~--------~~~l~~~a~~l~giLD~l~~l~~~QiRklf~iL~ 503 (1323)
T 3s4w_B 436 QQEVVGALVTHV--CS--GTEAEVDTALDVLLELIVLN--------ASAMRLNAAFVKGILDYLENMSPQQIRKIFCILS 503 (1323)
T ss_dssp HHHHHHHHHHHH--HH--CCHHHHHHHHHHHHHHHHHC--------HHHHHHTHHHHHGGGGGGGGCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh--cC--CCcHHHHHHHHHHHHHHhcC--------HHHHhHHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Confidence 345666666654 54 56666777999999998743 2345554444443 445556666666677777
Q ss_pred HHHHHhhhhhH-HHHHhhhH-HHHHhccCCHHHHHH-HHHHHHHH
Q 039448 903 RLAYEFSDLVS-NVYKLLPS-TFLLLQRKNREIIKA-NLGLLKVL 944 (1276)
Q Consensus 903 rLl~ef~d~i~-~~~~ll~~-v~llL~s~~REIvKs-aLgFvKV~ 944 (1276)
.|.|--...-+ .+.+-+.- |---|.+.+-+.=|- +||-|.+.
T Consensus 504 ~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v 548 (1323)
T 3s4w_B 504 TLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMA 548 (1323)
T ss_dssp HHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHH
Confidence 77775422111 12222222 233566666665444 55555543
Done!