BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039449
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3K1Z|A Chain A, Crystal Structure Of Human Haloacid Dehalogenase-like
Hydrolase Domain Containing 3 (hdhd3)
Length = 263
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 6/210 (2%)
Query: 8 RCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFA 67
R +T DV TLL + LG+ Y A++ GL + + +GF+ AY+ + ++P +G +
Sbjct: 2 RLLTWDVKDTLLRLRHPLGEAYATKARAHGLEV-EPSALEQGFRQAYRAQSHSFPNYGLS 60
Query: 68 AKMPNIVWWKTCVRDSFVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAR 127
+ + WW V +F AG D I ++Y F + V ++ LR R
Sbjct: 61 HGLTSRQWWLDVVLQTFHLAGVQ-DAQAVAPIAEQLYKDFSHPCTWQVLDGAEDTLRECR 119
Query: 128 EKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGN 187
+GL + +ISN + + + G+ +DF + S G KPDPRI++ AL R +
Sbjct: 120 TRGLRLAVISNFD---RRLEGILGGLGLREHFDFVLTSEAAGWPKPDPRIFQEAL-RLAH 175
Query: 188 IAPEEALHIGDSFRKDYVPAKSVGMHALLV 217
P A H+GD++ DY ++VG H+ LV
Sbjct: 176 XEPVVAAHVGDNYLCDYQGPRAVGXHSFLV 205
>pdb|1X42|A Chain A, Crystal Structure Of A Haloacid Dehalogenase Family
Protein (Ph0459) From Pyrococcus Horikoshii Ot3
Length = 232
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 112/229 (48%), Gaps = 14/229 (6%)
Query: 7 LRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGF 66
+R + D GTLL+ +GE + + + +G + K + + ++ +E NY +
Sbjct: 2 IRAVFFDFVGTLLSVEGEAKTHLKIXEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPY 61
Query: 67 AAKMPNIVWWKTCVRDSFVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWA 126
P + R + G+ Y E+ +E I R + +G ++P+ L+
Sbjct: 62 ---RPIRDIEEEVXRKLAEKYGFKYPENFWE-IHLRXHQRYGE-----LYPEVVEVLKSL 112
Query: 127 REKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAG 186
+ K VG I++++ Y L ALG+ +D S G KP PRI+E+AL++AG
Sbjct: 113 KGK-YHVGXITDSDTEYLXAHLDALGIKDL--FDSITTSEEAGFFKPHPRIFELALKKAG 169
Query: 187 NIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIV 235
+ EEA+++GD+ KD +K++G ++L+DR K + W K IV
Sbjct: 170 -VKGEEAVYVGDNPVKDCGGSKNLGXTSILLDR-KGEKREFWDKCDFIV 216
>pdb|4FFD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or48
Length = 234
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 112/229 (48%), Gaps = 14/229 (6%)
Query: 7 LRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGF 66
+R + D GTL + +G + + + +G + K + + ++ +E NY +
Sbjct: 2 IRAVFFDSLGTLNSVEGAAKSHLKIMEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPY 61
Query: 67 AAKMPNIVWWKTCVRDSFVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWA 126
P + +R + G+ Y E+ +E I R+ +G ++P+ L+
Sbjct: 62 R---PLRDILEEVMRKLAEKYGFKYPENFWE-ISLRMSQRYGE-----LYPEVVEVLKSL 112
Query: 127 REKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAG 186
+ K VG+I++++ L ALG+ +D S G KP PRI+E+AL++AG
Sbjct: 113 KGK-YHVGMITDSDTEQAMAFLDALGIKD--LFDSITTSEEAGFFKPHPRIFELALKKAG 169
Query: 187 NIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIV 235
+ EEA+++GD+ KD +K++GM ++L+DR K + W K IV
Sbjct: 170 -VKGEEAVYVGDNPVKDCGGSKNLGMTSILLDR-KGEKREFWDKCDFIV 216
>pdb|3U26|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or48
Length = 234
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/229 (26%), Positives = 108/229 (47%), Gaps = 14/229 (6%)
Query: 7 LRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGF 66
+R + D GTL + +G + + + +G + K + + ++ +E NY +
Sbjct: 2 IRAVFFDSLGTLNSVEGAAKSHLKIXEEVLGDYPLNPKTLLDEYEKLTREAFSNYAGKPY 61
Query: 67 AAKMPNIVWWKTCVRDSFVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWA 126
P + R + G+ Y E+ +E I R +G ++P+ L+
Sbjct: 62 ---RPLRDILEEVXRKLAEKYGFKYPENFWE-ISLRXSQRYGE-----LYPEVVEVLKSL 112
Query: 127 REKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAG 186
+ K VG I++++ L ALG+ +D S G KP PRI+E+AL++AG
Sbjct: 113 KGK-YHVGXITDSDTEQAXAFLDALGIKD--LFDSITTSEEAGFFKPHPRIFELALKKAG 169
Query: 187 NIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIV 235
+ EEA+++GD+ KD +K++G ++L+DR K + W K IV
Sbjct: 170 -VKGEEAVYVGDNPVKDCGGSKNLGXTSILLDR-KGEKREFWDKCDFIV 216
>pdb|2HOQ|A Chain A, Crystal Structure Of The Probable Haloacid Dehalogenase
(Ph1655) From Pyrococcus Horikoshii Ot3
Length = 241
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPR 176
P ++ L +E G +GII++ Q + L ++ E + S EGV+KP P+
Sbjct: 97 PGARKVLIRLKELGYELGIITDGNPVKQWEKILRLELDDFFE--HVIISDFEGVKKPHPK 154
Query: 177 IYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAK-EWRKSGAIV 235
I++ AL +A N+ PEEAL +GD D AK VGM + K + + E+RK
Sbjct: 155 IFKKAL-KAFNVKPEEALMVGDRLYSDIYGAKRVGMKTVWFRYGKHSERELEYRKYADYE 213
Query: 236 LPDLVAVKEFLTSEISA 252
+ +L ++ E L E S+
Sbjct: 214 IDNLESLLEVLARESSS 230
>pdb|3D6J|A Chain A, Crystal Structure Of Putative Haloacid Dehalogenase-Like
Hydrolase From Bacteroides Fragilis
Length = 225
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/113 (37%), Positives = 61/113 (53%), Gaps = 11/113 (9%)
Query: 92 DEDTFEKIFRRIY---ASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVIL 148
D D E FR+ Y A +A +FPD+ P L +++G+ +GIIS +YR++ IL
Sbjct: 65 DADQLES-FRQEYSKEADIYXNANTILFPDTLPTLTHLKKQGIRIGIIST-KYRFR--IL 120
Query: 149 PALGVNQGTEWDFGVFSGLEGV--EKPDPRIYEIALERAGNIAPEEALHIGDS 199
L + +W F + G E V KPDP +A++R PEE L+IGDS
Sbjct: 121 SFLRNHXPDDW-FDIIIGGEDVTHHKPDPEGLLLAIDRL-KACPEEVLYIGDS 171
>pdb|2OM6|A Chain A, Hypothetical Protein (probable Phosphoserine Phosph
(ph0253) From Pyrococcus Horikoshii Ot3
pdb|2OM6|B Chain B, Hypothetical Protein (probable Phosphoserine Phosph
(ph0253) From Pyrococcus Horikoshii Ot3
Length = 235
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 56/108 (51%), Gaps = 6/108 (5%)
Query: 115 VFPDSQPFLRWAREKGLIVGIISNAEY---RYQDVILPALGVNQGTEWDFGVFSGLEGVE 171
V ++ L++ +E+GL +I N + Y ++L G+ + + F F+
Sbjct: 100 VLEGTKEALQFVKERGLKTAVIGNVXFWPGSYTRLLLERFGLXEFIDKTF--FADEVLSY 157
Query: 172 KPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDR 219
KP +E L + + PEE+LHIGD++ +DY A+ VG A+ +++
Sbjct: 158 KPRKEXFEKVL-NSFEVKPEESLHIGDTYAEDYQGARKVGXWAVWINQ 204
>pdb|2ZG6|A Chain A, Crystal Structure Of Hypothetical Protein; Probable 2-
Haloalkanoic Acid Dehalogenase From Sulfolobus Tokodaii
pdb|2ZG6|B Chain B, Crystal Structure Of Hypothetical Protein; Probable 2-
Haloalkanoic Acid Dehalogenase From Sulfolobus Tokodaii
Length = 220
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 115 VFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPD 174
++ D+ FL + G + ++SNA R + +L + + +D S KP+
Sbjct: 96 LYDDTLEFLEGLKSNGYKLALVSNASPRVK-TLLEKFDLKK--YFDALALSYEIKAVKPN 152
Query: 175 PRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFK-TPDAKEWRKS 231
P+I+ AL + G A+H+GD + DY+ AK + +L+DR+ PD ++ K+
Sbjct: 153 PKIFGFALAKVGY----PAVHVGDIYELDYIGAKRSYVDPILLDRYDFYPDVRDRVKN 206
>pdb|3VAY|A Chain A, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
pdb|3VAY|B Chain B, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
Length = 230
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 65/153 (42%), Gaps = 19/153 (12%)
Query: 87 AGYDYDEDTFEKIFRRIYASF-GSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQD 145
AGYD DE +++ + F +FP+ QP L K +G+I+N +
Sbjct: 79 AGYDSDE--AQQLADESFEVFLHGRHQVQIFPEVQPTLE-ILAKTFTLGVITNGNADVRR 135
Query: 146 VILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYV 205
+ L + F + + G+ KPDP + AL RA + A+H+GD D
Sbjct: 136 LGL-------ADYFAFALCAEDLGIGKPDPAPFLEALRRA-KVDASAAVHVGDHPSDDIA 187
Query: 206 PAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPD 238
A+ GM A+ + P K W A LPD
Sbjct: 188 GAQQAGMRAI----WYNPQGKAW---DADRLPD 213
>pdb|3SMV|A Chain A, X-Ray Crystal Structure Of L-Azetidine-2-Carboxylate
Hydrolase
Length = 240
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 55/112 (49%), Gaps = 14/112 (12%)
Query: 107 FGSSAP-YTVFPDSQPFLRWARE--KGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGV 163
FG+S + FPD+ L++ ++ K +I+ I E++ + L G E+D +
Sbjct: 91 FGTSVKNWPAFPDTVEALQYLKKHYKLVILSNIDRNEFKLSNAKL-------GVEFDHII 143
Query: 164 FSGLEGVEKPDPRIYEI---ALERAGNIAPEEALHIGDSFRKDYVPAKSVGM 212
+ G KP+P + AL +AG I ++ LH +S D++PA G+
Sbjct: 144 TAQDVGSYKPNPNNFTYMIDALAKAG-IEKKDILHTAESLYHDHIPANDAGL 194
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 58/123 (47%), Gaps = 8/123 (6%)
Query: 119 SQPFLRWA---REKGLIVGIISNA--EYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKP 173
++P L+ A R+KG I++N + R + L L +DF + S G+ KP
Sbjct: 102 NRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKP 161
Query: 174 DPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGA 233
+P+IY+ L+ +P E + + D + PA+ +GM +LV T KE K
Sbjct: 162 EPQIYKFLLDTL-KASPSEVVFL-DDIGANLKPARDLGMVTILVQDTDTA-LKELEKVTG 218
Query: 234 IVL 236
I L
Sbjct: 219 IQL 221
>pdb|2NO4|A Chain A, Crystal Structure Analysis Of A Dehalogenase
pdb|2NO4|B Chain B, Crystal Structure Analysis Of A Dehalogenase
Length = 240
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKP 173
+ +PD+ L + G IV I+SN L A +++ D + + + KP
Sbjct: 105 SAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVL--DSCLSADDLKIYKP 162
Query: 174 DPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTP 223
DPRIY+ A +R G + P E + S D A G + + ++R P
Sbjct: 163 DPRIYQFACDRLG-VNPNEVCFVS-SNAWDLGGAGKFGFNTVRINRQGNP 210
>pdb|2NO5|A Chain A, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
pdb|2NO5|B Chain B, Crystal Structure Analysis Of A Dehalogenase With
Intermediate Complex
Length = 240
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 4/110 (3%)
Query: 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKP 173
+ +PD+ L + G IV I+SN L A +++ D + + + KP
Sbjct: 105 SAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLDRVL--DSCLSADDLKIYKP 162
Query: 174 DPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTP 223
DPRIY+ A +R G + P E + S D A G + + ++R P
Sbjct: 163 DPRIYQFACDRLG-VNPNEVCFVS-SNAWDLGGAGKFGFNTVRINRQGNP 210
>pdb|1QH9|A Chain A, Enzyme-Product Complex Of L-2-Haloacid Dehalogenase
pdb|1JUD|A Chain A, L-2-haloacid Dehalogenase
Length = 232
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 111 APYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGV 170
AP++ PDS LR + +GL + I+SN + D ++ G+ G +D + V
Sbjct: 95 APFSEVPDS---LRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDG--FDHLLSVDPVQV 149
Query: 171 EKPDPRIYEIALERAG 186
KPD R+YE+A + G
Sbjct: 150 YKPDNRVYELAEQALG 165
>pdb|1ZRM|A Chain A, Crystal Structure Of The Reaction Intermediate Of
L-2-Haloacid Dehalogenase With 2-Chloro-N-Butyrate
pdb|1ZRN|A Chain A, Intermediate Structure Of L-2-haloacid Dehalogenase With
Monochloroacetate
Length = 232
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 5/76 (6%)
Query: 111 APYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGV 170
AP++ PDS LR + +GL + I+SN + D ++ G+ G +D + V
Sbjct: 95 APFSEVPDS---LRELKRRGLKLAILSNGSPQSIDAVVSHAGLRDG--FDHLLSVDPVQV 149
Query: 171 EKPDPRIYEIALERAG 186
KPD R+YE+A + G
Sbjct: 150 YKPDNRVYELAEQALG 165
>pdb|3E58|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
pdb|3E58|B Chain B, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Streptococcus Thermophilus
Length = 214
Score = 35.0 bits (79), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 64/141 (45%), Gaps = 15/141 (10%)
Query: 62 PCFGFAAKMPNIVWWKTCVRDSFVRAGYDYDEDTFEKIFRRIYASFGSSAPYT--VFPDS 119
P F + W+ +RD + + +D T ++ + + + PY +FPD
Sbjct: 43 PSFFIGGNTKQV--WENILRDEYDK----WDVSTLQEEYNTYKQN--NPLPYKELIFPDV 94
Query: 120 QPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVE-KPDPRIY 178
L + +GL +G+ S++ + I AL N+ + V SG E E KP+P IY
Sbjct: 95 LKVLNEVKSQGLEIGLASSS---VKADIFRALEENRLQGFFDIVLSGEEFKESKPNPEIY 151
Query: 179 EIALERAGNIAPEEALHIGDS 199
AL++ N+ AL I DS
Sbjct: 152 LTALKQL-NVQASRALIIEDS 171
>pdb|3QNM|A Chain A, Haloalkane Dehalogenase Family Member From Bacteroides
Thetaiotaomicron Of Unknown Function
Length = 240
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 169 GVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMH 213
GV KP P I+ AL A E+L IGDS+ D A VG H
Sbjct: 159 GVLKPRPEIFHFALS-ATQSELRESLXIGDSWEADITGAHGVGXH 202
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 49/104 (47%), Gaps = 7/104 (6%)
Query: 119 SQPFLRWA---REKGLIVGIISNAEYRYQDV--ILPALGVNQGTEWDFGVFSGLEGVEKP 173
++P L+ A ++KG I++N D L + +DF + S G+ KP
Sbjct: 102 NRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELSQHFDFLIESCQVGMIKP 161
Query: 174 DPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLV 217
+P+IY L+ P E + + D F + PA+ +GM +LV
Sbjct: 162 EPQIYNFLLDTL-KAKPNEVVFL-DDFGSNLKPARDMGMVTILV 203
>pdb|3KBB|A Chain A, Crystal Structure Of Putative Beta-Phosphoglucomutase From
Thermotoga Maritima
Length = 216
Score = 33.9 bits (76), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 159 WDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVD 218
+D VF KPDP IY + LER N+ PE+ + DS + AKS G+ +
Sbjct: 127 FDVXVFGDQVKNGKPDPEIYLLVLERL-NVVPEKVVVFEDS-KSGVEAAKSAGIERIYGV 184
Query: 219 RFKTPDAKEWRKSGAIVL 236
D K ++GA+ L
Sbjct: 185 VHSLNDGKALLEAGAVAL 202
>pdb|2HO4|A Chain A, Crystal Structure Of Protein From Mouse Mm.236127
pdb|2HO4|B Chain B, Crystal Structure Of Protein From Mouse Mm.236127
Length = 259
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 157 TEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALL 216
T ++ + V KP+ + AL R + APEEA+ IGD R D A+++G +L
Sbjct: 164 TALEYATDTKAXVVGKPEKTFFLEAL-RDADCAPEEAVXIGDDCRDDVDGAQNIGXLGIL 222
Query: 217 VDRFKTPDAKEWR 229
V K A E +
Sbjct: 223 VKTGKYKAADEEK 235
>pdb|4GZ9|A Chain A, Mouse Neuropilin-1, Extracellular Domains 1-4 (A1a2b1b2)
pdb|4GZA|H Chain H, Complex Of Mouse Plexin A2 - Semaphorin 3a - Neuropilin-1
Length = 577
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 61/160 (38%), Gaps = 20/160 (12%)
Query: 60 NYPCFGFAAKMPNIVWWKTCVRDSFVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDS 119
+YPC G + ++ DS + A D + + R + + G + P + P +
Sbjct: 410 DYPCSGMLGMVSGLI------SDSQITASNQADRNWMPENIRLVTSRTGWALPPSPHPYT 463
Query: 120 QPFLR--WAREKGLIVGIISNAEYRYQDVILPALGV---NQGTEWDFGV---------FS 165
+L+ EK + II ++R V + + N G++W + F
Sbjct: 464 NEWLQVDLGDEKIVRGVIIQGGKHRENKVFMRKFKIAYSNNGSDWKTIMDDSKRKAKSFE 523
Query: 166 GLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYV 205
G + P+ R + R I PE A H G R + +
Sbjct: 524 GNNNYDTPELRTFSPLSTRFIRIYPERATHSGLGLRMELL 563
>pdb|3HLT|A Chain A, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
pdb|3HLT|C Chain C, The Crystal Structure Of Human Haloacid Dehalogenase-Like
Hydrolase Domain Containing 2 (Hdhd2)
Length = 266
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 170 VEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLV 217
V KP+ + AL R PEEA+ IGD R D A+ VGM +LV
Sbjct: 177 VGKPEKTFFLEAL-RGTGCEPEEAVMIGDDCRDDVGGAQDVGMLGILV 223
>pdb|3UMB|A Chain A, Crystal Structure Of The L-2-Haloacid Dehalogenase Rsc1362
Length = 233
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVN 154
+ FP++ P LR RE GL +GI+SN + ++ + + G +
Sbjct: 99 SAFPENVPVLRQLREXGLPLGILSNGNPQXLEIAVKSAGXS 139
>pdb|2ORX|A Chain A, Structural Basis For Ligand Binding And Heparin Mediated
Activation Of Neuropilin
pdb|2ORZ|A Chain A, Structural Basis For Ligand Binding And Heparin Mediated
Activation Of Neuropilin
Length = 314
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 63/164 (38%), Gaps = 28/164 (17%)
Query: 60 NYPCFGFAAKMPNIVWWKTCVRDSFVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDS 119
+YPC G + ++ DS + A D + + R + + G + P P
Sbjct: 156 DYPCSGMLGMVSGLI------SDSQITASNQGDRNWMPENIRLVTSRTGWALP----PSP 205
Query: 120 QPFLR-WAR----EKGLIVG-IISNAEYRYQDVILPALGV---NQGTEWDFGV------- 163
P++ W + ++ ++ G II ++R V + + N G++W +
Sbjct: 206 HPYINEWLQVDLGDEKIVRGVIIQGGKHRENKVFMRKFKIAYSNNGSDWKMIMDDSKRKA 265
Query: 164 --FSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYV 205
F G + P+ R + R I PE A H G R + +
Sbjct: 266 KSFEGNNNYDTPELRAFTPLSTRFIRIYPERATHSGLGLRMELL 309
>pdb|2X4D|A Chain A, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
pdb|2X4D|B Chain B, Crystal Structure Of Human Phospholysine Phosphohistidine
Inorganic Pyrophosphate Phosphatase Lhpp
Length = 271
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 168 EGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLV--DRFKTPD 224
E V KP P ++ AL+ G + +A+ IGD D A+ GM AL V +F+ D
Sbjct: 186 EVVGKPSPEFFKSALQAIG-VEAHQAVMIGDDIVGDVGGAQRCGMRALQVRTGKFRPSD 243
>pdb|2HDO|A Chain A, Crystal Structure Of Putative Phosphoglycolate Phosphatase
(Np_784602.1) From Lactobacillus Plantarum At 1.50 A
Resolution
Length = 209
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 172 KPDPRIYEIALERAGNIAPEEALHIGDS 199
KPDP ALE+ N+AP+ AL IGDS
Sbjct: 138 KPDPLPLLTALEKV-NVAPQNALFIGDS 164
>pdb|3UMG|A Chain A, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|B Chain B, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|C Chain C, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|D Chain D, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|E Chain E, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|F Chain F, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|G Chain G, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
pdb|3UMG|H Chain H, Crystal Structure Of The Defluorinating L-2-Haloacid
Dehalogenase Rha0230
Length = 254
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKP 173
T +PDS P L A + I+G +SN +L + N G WD + S + KP
Sbjct: 116 TPWPDSVPGLT-AIKAEYIIGPLSNGNTS----LLLDMAKNAGIPWDVIIGSDINRKYKP 170
Query: 174 DPRIY 178
DP+ Y
Sbjct: 171 DPQAY 175
>pdb|4IG8|A Chain A, Structural Basis For Cytosolic Double-stranded Rna
Surveillance By Human Oas1
Length = 349
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 142 RYQDVILPALGVNQGTEWD----FGVFSGLEGVEKPDPRIYEIALERAGNIAPE-EALHI 196
R +L +L + +G E+D F L G KP+P+IY +E ++ E E
Sbjct: 130 RALSFVLSSLQLGEGVEFDVLPAFDALGQLTGGYKPNPQIYVKLIEECTDLQKEGEFSTC 189
Query: 197 GDSFRKDYVPAKSVGMHALL 216
++D++ + + +L+
Sbjct: 190 FTELQRDFLKQRPTKLKSLI 209
>pdb|3DDH|A Chain A, The Structure Of A Putative Haloacid Dehalogenase-like
Family Hydrolase From Bacteroides Thetaiotaomicron
Vpi-5482
pdb|3DDH|B Chain B, The Structure Of A Putative Haloacid Dehalogenase-like
Family Hydrolase From Bacteroides Thetaiotaomicron
Vpi-5482
Length = 234
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 187 NIAPEEALHIGDSFRKDYVPAKSVG 211
IAP E L +G+SF+ D P S+G
Sbjct: 171 QIAPSELLXVGNSFKSDIQPVLSLG 195
>pdb|3OLJ|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|B Chain B, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|C Chain C, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
pdb|3OLJ|D Chain D, Crystal Structure Of Human Ribonucleotide Reductase
Subunit M2 (Hrrm2)
Length = 286
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 125 WAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKP-DPRIYEIALE 183
W +++GL+ G+ + E +D +G DF V KP + R+ EI +
Sbjct: 181 WLKKRGLMPGLTFSNELISRD---------EGLHCDFACLMFKHLVHKPSEERVREIIIN 231
Query: 184 RAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRF 220
A+ I F + +P K +GM+ L+ ++
Sbjct: 232 ---------AVRIEQEFLTEALPVKLIGMNCTLMKQY 259
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 153 VNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193
V++G + +FG FSG G + PDP+ + L N A E
Sbjct: 464 VSEGRKKEFGGFSGFSGEDVPDPQAEQTFLNSKLNWAEREG 504
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 153 VNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193
V++G + +FG FSG G + PDP+ + L N A E
Sbjct: 464 VSEGRKKEFGGFSGFSGEDVPDPQAEQTFLNSKLNWAEREG 504
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1H0O|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase
To Model The Reactive Diferrous State
pdb|1W68|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Oxidizing Conditions. A Fully Occupied
Dinuclear Iron Cluster.
pdb|1W69|A Chain A, Crystal Structure Of Mouse Ribonucleotide Reductase
Subunit R2 Under Reducing Conditions. A Fully Occupied
Dinuclear Iron Cluster And Bound Acetate.
pdb|1XSM|A Chain A, Protein R2 Of Ribonucleotide Reductase From Mouse
Length = 390
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 19/97 (19%)
Query: 125 WAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKP-DPRIYEIALE 183
W +++GL+ G+ + E +D +G DF V KP + R+ EI
Sbjct: 246 WLKKRGLMPGLTFSNELISRD---------EGLHCDFACLMFKHLVHKPAEQRVREIITN 296
Query: 184 RAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRF 220
A+ I F + +P K +GM+ L+ ++
Sbjct: 297 ---------AVRIEQEFLTEALPVKLIGMNCTLMKQY 324
>pdb|1HKV|A Chain A, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
pdb|1HKV|B Chain B, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
Length = 453
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 92 DEDTFEKIFRRIYASFGSSAPYTVFPDSQPFL-----RWAREKGLIVGIISNAE 140
DED F R A+FGS A V ++ FL RW E+GL + + + E
Sbjct: 46 DEDDFRSRCRETAAAFGSGA--NVHYAAKAFLCSEVARWISEEGLCLDVCTGGE 97
>pdb|1TD9|A Chain A, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|B Chain B, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|C Chain C, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|D Chain D, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|E Chain E, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1TD9|F Chain F, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis
pdb|1XCO|A Chain A, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|B Chain B, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|C Chain C, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|D Chain D, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|E Chain E, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
pdb|1XCO|F Chain F, Crystal Structure Of A Phosphotransacetylase From Bacillus
Subtilis In Complex With Acetylphosphate
Length = 329
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 15/72 (20%)
Query: 129 KGLIVGIISNAEYRYQDVILPALGV---NQGTEWDFGVFSGLEGVEK-----------PD 174
KGL G++S A + D + PAL + +G + GVF G E+ PD
Sbjct: 121 KGLADGLVSGAAHSTADTVRPALQIIKTKEGVKKTSGVFIMARGEEQYVFADCAINIAPD 180
Query: 175 PR-IYEIALERA 185
+ + EIA+E A
Sbjct: 181 SQDLAEIAIESA 192
>pdb|1HKW|A Chain A, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
pdb|1HKW|B Chain B, Mycobacterium Diaminopimelate Dicarboxylase (Lysa)
Length = 453
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 7/54 (12%)
Query: 92 DEDTFEKIFRRIYASFGSSAPYTVFPDSQPFL-----RWAREKGLIVGIISNAE 140
DED F R A+FGS A V ++ FL RW E+GL + + + E
Sbjct: 46 DEDDFRSRCRETAAAFGSGA--NVHYAAKAFLCSEVARWISEEGLCLDVCTGGE 97
>pdb|3UMC|A Chain A, Crystal Structure Of The L-2-Haloacid Dehalogenase Pa0810
pdb|3UMC|B Chain B, Crystal Structure Of The L-2-Haloacid Dehalogenase Pa0810
pdb|3UMC|C Chain C, Crystal Structure Of The L-2-Haloacid Dehalogenase Pa0810
pdb|3UMC|D Chain D, Crystal Structure Of The L-2-Haloacid Dehalogenase Pa0810
Length = 254
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 86/215 (40%), Gaps = 22/215 (10%)
Query: 8 RCITVDVTGTLLAYKGELGDYYCMAAKSVG--LPCPDYK-RVHEGFKLAYKEMAKNYPCF 64
R I DV GTL+ ++ L + + + +G LPC + R + +K A + +
Sbjct: 23 RAILFDVFGTLVDWRSSLIEQFQALERELGGTLPCVELTDRWRQQYKPAXDRVRNGQAPW 82
Query: 65 GFAAKMPNIVWWKTCVRDSFVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLR 124
++ R S ++ E + +RI + P+ PD+
Sbjct: 83 QHLDQLH---------RQSLEALAGEFGLALDEALLQRITGFWHRLRPW---PDTLAGXH 130
Query: 125 WAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALER 184
A + + +SN + + + G WD + + L G KPDP++Y + R
Sbjct: 131 -ALKADYWLAALSNGN----TALXLDVARHAGLPWDXLLCADLFGHYKPDPQVY-LGACR 184
Query: 185 AGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDR 219
++ P+E + + + D A+++G+ + R
Sbjct: 185 LLDLPPQE-VXLCAAHNYDLKAARALGLKTAFIAR 218
>pdb|2O0T|A Chain A, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|B Chain B, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|C Chain C, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
pdb|2O0T|D Chain D, The Three Dimensional Structure Of Diaminopimelate
Decarboxylase From Mycobacterium Tuberculosis Reveals A
Tetrameric Enzyme Organisation
Length = 467
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 92 DEDTFEKIFRRIYASFGSSAPYTVFPDSQPFL-----RWAREKGLIVGIISNAE 140
DED F R A+FGS A V + FL RW E+GL + + + E
Sbjct: 48 DEDDFRSRCRETAAAFGSGA--NVHYAAXAFLCSEVARWISEEGLCLDVCTGGE 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,296,030
Number of Sequences: 62578
Number of extensions: 374484
Number of successful extensions: 856
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 825
Number of HSP's gapped (non-prelim): 40
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)