Query 039449
Match_columns 253
No_of_seqs 146 out of 1181
Neff 11.1
Searched_HMMs 46136
Date Fri Mar 29 09:45:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039449.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039449hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13288 pyrophosphatase PpaX; 100.0 4E-33 8.6E-38 209.3 19.3 210 6-248 2-212 (214)
2 COG0546 Gph Predicted phosphat 100.0 1.2E-32 2.7E-37 206.7 20.0 215 4-248 1-219 (220)
3 TIGR03351 PhnX-like phosphonat 100.0 1.2E-32 2.5E-37 207.8 19.9 213 7-246 1-219 (220)
4 PRK13226 phosphoglycolate phos 100.0 2E-32 4.4E-37 207.0 19.6 214 6-248 11-226 (229)
5 TIGR02252 DREG-2 REG-2-like, H 100.0 5.3E-32 1.2E-36 201.7 21.5 203 8-216 1-203 (203)
6 PRK10826 2-deoxyglucose-6-phos 100.0 2.6E-32 5.7E-37 205.9 19.6 216 1-244 1-217 (222)
7 PRK13222 phosphoglycolate phos 100.0 6.6E-32 1.4E-36 204.7 21.0 222 1-250 1-225 (226)
8 TIGR01422 phosphonatase phosph 100.0 6.7E-32 1.4E-36 207.6 19.7 222 6-246 1-252 (253)
9 TIGR01449 PGP_bact 2-phosphogl 100.0 5.5E-32 1.2E-36 203.3 18.8 209 10-246 1-213 (213)
10 PRK13478 phosphonoacetaldehyde 100.0 9.7E-32 2.1E-36 208.0 19.9 222 4-250 1-258 (267)
11 PLN02770 haloacid dehalogenase 100.0 1.1E-31 2.4E-36 205.1 19.3 209 4-242 19-231 (248)
12 KOG3085 Predicted hydrolase (H 100.0 4.9E-32 1.1E-36 198.9 16.5 213 1-219 1-214 (237)
13 PLN03243 haloacid dehalogenase 100.0 7.4E-32 1.6E-36 206.1 17.6 212 6-250 23-238 (260)
14 TIGR02253 CTE7 HAD superfamily 100.0 5.1E-31 1.1E-35 199.1 20.1 215 7-242 2-220 (221)
15 PRK09449 dUMP phosphatase; Pro 100.0 2.1E-30 4.5E-35 196.1 23.1 219 6-247 2-223 (224)
16 TIGR01454 AHBA_synth_RP 3-amin 100.0 3.4E-31 7.4E-36 197.6 18.2 202 10-247 1-204 (205)
17 TIGR02254 YjjG/YfnB HAD superf 100.0 9.7E-31 2.1E-35 198.1 19.9 223 7-246 1-224 (224)
18 PRK11587 putative phosphatase; 100.0 4.1E-31 8.9E-36 198.7 17.5 201 6-243 2-204 (218)
19 PRK13225 phosphoglycolate phos 100.0 1.3E-30 2.7E-35 200.6 20.3 210 6-251 61-272 (273)
20 PLN02575 haloacid dehalogenase 100.0 1.4E-30 3E-35 205.6 18.8 210 6-245 130-340 (381)
21 PRK10563 6-phosphogluconate ph 100.0 5.3E-31 1.1E-35 198.9 15.7 212 5-248 2-214 (221)
22 PRK13223 phosphoglycolate phos 100.0 1.5E-30 3.3E-35 201.0 18.5 219 6-249 12-232 (272)
23 TIGR01428 HAD_type_II 2-haloal 100.0 4.3E-30 9.3E-35 190.7 18.2 196 7-222 1-196 (198)
24 PRK10748 flavin mononucleotide 100.0 1.8E-29 3.9E-34 192.0 18.7 224 4-246 7-238 (238)
25 PLN02940 riboflavin kinase 100.0 1E-29 2.2E-34 204.6 17.9 208 6-244 10-218 (382)
26 COG1011 Predicted hydrolase (H 100.0 7.6E-29 1.7E-33 188.3 19.5 226 4-248 1-228 (229)
27 PRK10725 fructose-1-P/6-phosph 100.0 2E-29 4.4E-34 185.7 15.8 186 3-218 1-186 (188)
28 COG0637 Predicted phosphatase/ 100.0 2.9E-29 6.2E-34 188.0 16.2 213 6-248 1-218 (221)
29 TIGR01990 bPGM beta-phosphoglu 100.0 1.6E-28 3.5E-33 180.5 15.7 181 9-218 1-185 (185)
30 PRK14988 GMP/IMP nucleotidase; 100.0 1.2E-28 2.6E-33 185.4 15.3 128 113-248 92-220 (224)
31 TIGR02009 PGMB-YQAB-SF beta-ph 100.0 1.3E-28 2.8E-33 181.0 15.1 182 7-217 1-185 (185)
32 PLN02779 haloacid dehalogenase 100.0 3.4E-28 7.4E-33 189.0 18.0 213 5-243 38-269 (286)
33 PRK06698 bifunctional 5'-methy 100.0 2E-28 4.3E-33 202.7 17.7 214 5-250 239-457 (459)
34 PF13419 HAD_2: Haloacid dehal 100.0 5.9E-28 1.3E-32 176.0 10.8 175 10-217 1-176 (176)
35 PLN02919 haloacid dehalogenase 99.9 1.7E-26 3.7E-31 205.9 19.3 210 4-242 72-285 (1057)
36 TIGR01993 Pyr-5-nucltdase pyri 99.9 1.8E-26 3.9E-31 169.2 14.1 175 8-217 1-184 (184)
37 TIGR01548 HAD-SF-IA-hyp1 haloa 99.9 1.8E-25 3.9E-30 165.6 16.2 183 9-210 2-197 (197)
38 TIGR02247 HAD-1A3-hyp Epoxide 99.9 5.2E-26 1.1E-30 170.4 12.5 103 113-219 93-197 (211)
39 PLN02811 hydrolase 99.9 3.6E-25 7.8E-30 166.6 15.8 200 14-243 1-207 (220)
40 PRK09456 ?-D-glucose-1-phospha 99.9 9.7E-25 2.1E-29 161.8 17.3 185 8-219 1-186 (199)
41 TIGR01509 HAD-SF-IA-v3 haloaci 99.9 1.2E-24 2.5E-29 159.7 15.4 100 113-217 84-183 (183)
42 PHA02597 30.2 hypothetical pro 99.9 6.8E-24 1.5E-28 157.2 15.3 191 7-244 2-196 (197)
43 TIGR00338 serB phosphoserine p 99.9 1.8E-23 3.8E-28 157.7 17.8 197 4-246 11-219 (219)
44 PLN02954 phosphoserine phospha 99.9 8.9E-23 1.9E-27 154.4 19.0 203 4-246 9-223 (224)
45 TIGR01549 HAD-SF-IA-v1 haloaci 99.9 1.6E-23 3.5E-28 149.2 13.6 154 9-211 1-154 (154)
46 KOG2914 Predicted haloacid-hal 99.9 9.4E-23 2E-27 149.7 16.7 208 4-242 7-218 (222)
47 PRK08942 D,D-heptose 1,7-bisph 99.9 2.1E-23 4.5E-28 152.3 13.1 129 114-249 29-179 (181)
48 TIGR01493 HAD-SF-IA-v2 Haloaci 99.9 9.7E-24 2.1E-28 153.6 9.8 175 9-210 1-175 (175)
49 PRK06769 hypothetical protein; 99.9 6.7E-23 1.5E-27 147.9 13.4 130 114-247 28-172 (173)
50 TIGR00213 GmhB_yaeD D,D-heptos 99.9 2.8E-22 6.2E-27 145.5 13.0 123 114-243 26-175 (176)
51 TIGR01491 HAD-SF-IB-PSPlk HAD- 99.9 1.6E-21 3.4E-26 145.2 15.9 102 113-218 79-190 (201)
52 TIGR01691 enolase-ppase 2,3-di 99.9 3.4E-21 7.4E-26 143.1 17.1 123 113-241 94-219 (220)
53 TIGR01656 Histidinol-ppas hist 99.9 4.1E-22 9E-27 140.3 9.4 104 114-219 27-146 (147)
54 PRK09552 mtnX 2-hydroxy-3-keto 99.9 3.7E-21 8E-26 144.7 14.3 132 113-250 73-216 (219)
55 TIGR01662 HAD-SF-IIIA HAD-supe 99.9 4E-21 8.7E-26 133.1 13.3 97 114-218 25-131 (132)
56 PRK13582 thrH phosphoserine ph 99.9 7.8E-21 1.7E-25 141.8 15.2 128 113-250 67-199 (205)
57 PRK11133 serB phosphoserine ph 99.9 4.2E-20 9E-25 144.9 18.8 127 113-249 180-318 (322)
58 KOG3109 Haloacid dehalogenase- 99.9 4.8E-20 1E-24 131.1 14.9 182 5-219 13-206 (244)
59 TIGR01261 hisB_Nterm histidino 99.8 9.7E-21 2.1E-25 134.3 10.2 101 113-219 28-148 (161)
60 TIGR01685 MDP-1 magnesium-depe 99.8 1.8E-21 4E-26 138.7 4.4 103 113-219 44-158 (174)
61 TIGR01672 AphA HAD superfamily 99.8 1.5E-19 3.2E-24 135.4 13.5 95 114-219 114-212 (237)
62 TIGR01458 HAD-SF-IIA-hyp3 HAD- 99.8 1.1E-19 2.4E-24 139.4 12.8 128 116-247 122-255 (257)
63 TIGR02137 HSK-PSP phosphoserin 99.8 3.6E-18 7.7E-23 126.0 16.9 189 8-249 2-198 (203)
64 TIGR01452 PGP_euk phosphoglyco 99.8 1.4E-19 3E-24 140.9 9.8 123 115-242 144-279 (279)
65 TIGR03333 salvage_mtnX 2-hydro 99.8 2.1E-18 4.4E-23 129.3 14.3 131 113-250 69-212 (214)
66 TIGR01664 DNA-3'-Pase DNA 3'-p 99.8 8.2E-19 1.8E-23 125.3 11.3 100 114-217 42-161 (166)
67 cd01427 HAD_like Haloacid deha 99.8 1.1E-18 2.3E-23 121.9 9.3 101 113-217 23-139 (139)
68 TIGR01668 YqeG_hyp_ppase HAD s 99.8 2.3E-18 4.9E-23 124.0 10.8 94 114-219 43-137 (170)
69 PLN02645 phosphoglycolate phos 99.8 6.1E-18 1.3E-22 133.4 13.5 121 123-247 179-308 (311)
70 PRK10444 UMP phosphatase; Prov 99.8 5.8E-18 1.3E-22 128.8 12.2 71 170-242 172-245 (248)
71 TIGR01490 HAD-SF-IB-hyp1 HAD-s 99.8 1.9E-17 4.2E-22 123.2 14.4 120 91-217 67-197 (202)
72 COG2179 Predicted hydrolase of 99.8 7.5E-18 1.6E-22 115.2 9.4 91 117-219 49-139 (175)
73 TIGR01489 DKMTPPase-SF 2,3-dik 99.8 7.9E-17 1.7E-21 118.6 15.6 94 113-213 71-184 (188)
74 TIGR02726 phenyl_P_delta pheny 99.7 1.2E-17 2.6E-22 119.0 10.2 99 121-237 41-139 (169)
75 COG0560 SerB Phosphoserine pho 99.7 8.2E-17 1.8E-21 119.3 14.9 174 5-217 3-186 (212)
76 PRK05446 imidazole glycerol-ph 99.7 3.2E-17 6.9E-22 129.4 12.4 101 113-219 29-149 (354)
77 TIGR01670 YrbI-phosphatas 3-de 99.7 5.5E-18 1.2E-22 120.0 7.1 110 122-249 36-148 (154)
78 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.7 5.6E-18 1.2E-22 129.5 6.4 122 117-242 124-249 (249)
79 TIGR01488 HAD-SF-IB Haloacid D 99.7 3E-16 6.5E-21 114.4 13.2 94 113-210 72-177 (177)
80 PRK09484 3-deoxy-D-manno-octul 99.7 6.9E-17 1.5E-21 117.7 9.3 109 121-247 55-169 (183)
81 PRK11009 aphA acid phosphatase 99.7 3.1E-16 6.7E-21 117.4 12.9 94 113-219 113-212 (237)
82 COG0647 NagD Predicted sugar p 99.7 4.5E-17 9.7E-22 123.3 8.0 78 169-248 187-267 (269)
83 PF00702 Hydrolase: haloacid d 99.7 7.8E-17 1.7E-21 121.2 8.3 89 114-211 127-215 (215)
84 PHA02530 pseT polynucleotide k 99.7 2.7E-16 5.9E-21 124.1 9.3 103 114-219 187-297 (300)
85 PRK10530 pyridoxal phosphate ( 99.6 2.3E-15 5E-20 117.3 11.8 125 116-249 139-270 (272)
86 PRK11590 hypothetical protein; 99.6 7.8E-14 1.7E-18 104.3 18.3 189 6-218 5-202 (211)
87 TIGR01459 HAD-SF-IIA-hyp4 HAD- 99.6 1.1E-15 2.4E-20 116.6 8.3 99 116-218 140-241 (242)
88 PF06888 Put_Phosphatase: Puta 99.6 4.8E-14 1E-18 105.0 16.0 200 9-249 2-233 (234)
89 TIGR01681 HAD-SF-IIIC HAD-supe 99.6 1.5E-15 3.3E-20 104.0 7.0 89 114-209 29-126 (128)
90 KOG2882 p-Nitrophenyl phosphat 99.6 5.1E-15 1.1E-19 111.1 9.7 124 119-247 170-304 (306)
91 COG0241 HisB Histidinol phosph 99.6 7.4E-14 1.6E-18 99.2 14.3 126 114-246 31-176 (181)
92 TIGR01456 CECR5 HAD-superfamil 99.6 7.5E-14 1.6E-18 110.7 13.2 75 170-246 231-320 (321)
93 TIGR01686 FkbH FkbH-like domai 99.6 1.1E-14 2.4E-19 115.4 8.1 91 114-213 31-125 (320)
94 smart00577 CPDc catalytic doma 99.5 1.3E-14 2.7E-19 102.2 5.7 96 113-215 44-139 (148)
95 PF13242 Hydrolase_like: HAD-h 99.5 2.9E-14 6.3E-19 88.2 6.3 71 170-242 2-75 (75)
96 PRK01158 phosphoglycolate phos 99.5 1.7E-14 3.8E-19 109.6 6.2 73 169-248 153-227 (230)
97 TIGR02244 HAD-IG-Ncltidse HAD 99.5 7.4E-13 1.6E-17 104.0 15.1 104 113-219 183-324 (343)
98 TIGR01663 PNK-3'Pase polynucle 99.5 1.8E-13 3.8E-18 113.6 11.6 93 115-212 198-305 (526)
99 KOG3040 Predicted sugar phosph 99.5 1.2E-12 2.6E-17 92.9 13.1 80 169-249 178-259 (262)
100 TIGR01544 HAD-SF-IE haloacid d 99.5 1.6E-12 3.4E-17 99.1 14.1 181 9-210 24-230 (277)
101 COG4229 Predicted enolase-phos 99.5 3.3E-12 7.1E-17 88.7 14.2 120 113-240 102-224 (229)
102 KOG1615 Phosphoserine phosphat 99.5 1.3E-12 2.8E-17 91.7 11.9 94 112-209 86-191 (227)
103 KOG3120 Predicted haloacid deh 99.5 3E-12 6.6E-17 91.7 12.7 207 6-253 12-250 (256)
104 TIGR01482 SPP-subfamily Sucros 99.4 2E-13 4.3E-18 103.4 6.0 99 133-240 110-209 (225)
105 PRK00192 mannosyl-3-phosphogly 99.4 3.2E-12 7E-17 99.5 12.4 77 173-252 190-272 (273)
106 PRK08238 hypothetical protein; 99.4 4E-12 8.7E-17 105.1 13.4 95 113-218 71-165 (479)
107 PTZ00445 p36-lilke protein; Pr 99.4 1.1E-12 2.3E-17 94.4 8.3 102 114-219 75-206 (219)
108 COG1778 Low specificity phosph 99.4 4.1E-13 9E-18 91.0 5.2 84 122-218 43-126 (170)
109 TIGR01545 YfhB_g-proteo haloac 99.4 8E-11 1.7E-15 87.6 17.4 121 92-216 74-200 (210)
110 TIGR01460 HAD-SF-IIA Haloacid 99.4 1.8E-12 3.9E-17 98.5 8.2 48 170-218 186-234 (236)
111 PF12689 Acid_PPase: Acid Phos 99.4 3.6E-13 7.7E-18 95.3 4.0 98 113-219 44-152 (169)
112 PF09419 PGP_phosphatase: Mito 99.4 2.7E-12 5.9E-17 90.5 7.8 90 117-219 62-165 (168)
113 TIGR01487 SPP-like sucrose-pho 99.4 8.6E-13 1.9E-17 99.1 5.2 96 133-238 110-205 (215)
114 PRK10976 putative hydrolase; P 99.3 2.9E-12 6.3E-17 99.5 7.2 74 170-250 187-264 (266)
115 PRK03669 mannosyl-3-phosphogly 99.3 3.2E-11 6.9E-16 93.8 12.7 83 168-252 182-270 (271)
116 PF12710 HAD: haloacid dehalog 99.3 1.2E-11 2.6E-16 91.3 9.6 89 117-208 92-192 (192)
117 TIGR01533 lipo_e_P4 5'-nucleot 99.3 2.4E-11 5.2E-16 92.7 10.7 85 113-207 117-204 (266)
118 PF08645 PNK3P: Polynucleotide 99.3 7.7E-12 1.7E-16 88.6 7.2 94 116-214 31-152 (159)
119 COG0561 Cof Predicted hydrolas 99.3 9.3E-12 2E-16 96.5 7.0 75 169-250 185-261 (264)
120 PRK15126 thiamin pyrimidine py 99.3 6.2E-12 1.3E-16 97.9 5.8 75 169-250 184-262 (272)
121 TIGR02463 MPGP_rel mannosyl-3- 99.3 2.4E-11 5.3E-16 91.7 8.8 45 170-216 176-220 (221)
122 COG4359 Uncharacterized conser 99.3 4.9E-10 1.1E-14 78.2 13.7 126 113-250 72-215 (220)
123 PRK10513 sugar phosphate phosp 99.3 1.5E-11 3.4E-16 95.7 7.0 74 169-249 192-267 (270)
124 PLN02887 hydrolase family prot 99.2 2.1E-10 4.6E-15 96.8 10.3 73 169-248 503-577 (580)
125 TIGR01684 viral_ppase viral ph 99.1 1.3E-10 2.9E-15 88.4 6.7 58 117-176 149-206 (301)
126 TIGR01512 ATPase-IB2_Cd heavy 99.1 2.6E-10 5.7E-15 96.7 7.6 115 114-247 362-479 (536)
127 TIGR01525 ATPase-IB_hvy heavy 99.1 5.6E-10 1.2E-14 95.3 9.3 114 114-247 384-500 (556)
128 TIGR00099 Cof-subfamily Cof su 99.0 2.4E-10 5.2E-15 88.3 4.7 63 170-239 185-247 (256)
129 TIGR01485 SPP_plant-cyano sucr 99.0 2.2E-09 4.7E-14 82.5 9.0 49 168-218 162-210 (249)
130 PF06941 NT5C: 5' nucleotidase 99.0 8.2E-10 1.8E-14 81.3 6.2 110 112-249 71-188 (191)
131 TIGR02471 sucr_syn_bact_C sucr 99.0 2.1E-09 4.6E-14 81.9 7.3 49 168-218 154-202 (236)
132 PF08282 Hydrolase_3: haloacid 99.0 2.6E-09 5.6E-14 82.2 7.5 63 172-241 185-247 (254)
133 TIGR01486 HAD-SF-IIB-MPGP mann 98.9 1.1E-08 2.4E-13 78.9 9.8 49 169-219 172-222 (256)
134 TIGR01511 ATPase-IB1_Cu copper 98.9 7.7E-09 1.7E-13 88.3 9.4 113 114-247 405-519 (562)
135 TIGR02251 HIF-SF_euk Dullard-l 98.9 1.2E-09 2.6E-14 77.9 3.5 98 114-218 42-139 (162)
136 COG4087 Soluble P-type ATPase 98.9 5.4E-08 1.2E-12 64.2 9.8 121 113-249 29-149 (152)
137 KOG2630 Enolase-phosphatase E- 98.9 3.5E-07 7.6E-12 66.6 14.7 126 114-243 123-249 (254)
138 PRK12702 mannosyl-3-phosphogly 98.8 5.3E-08 1.2E-12 74.6 11.0 46 171-218 206-253 (302)
139 PRK10671 copA copper exporting 98.8 1.6E-08 3.5E-13 90.3 9.4 115 114-247 650-765 (834)
140 TIGR01459 HAD-SF-IIA-hyp4 HAD- 98.8 1.7E-08 3.6E-13 77.3 7.9 91 114-212 24-116 (242)
141 TIGR01522 ATPase-IIA2_Ca golgi 98.8 2.5E-08 5.5E-13 89.5 10.2 127 114-248 528-672 (884)
142 PF13344 Hydrolase_6: Haloacid 98.8 3E-08 6.6E-13 64.7 7.4 84 114-212 14-100 (101)
143 PRK14502 bifunctional mannosyl 98.8 8.6E-08 1.9E-12 81.5 11.5 46 171-218 611-658 (694)
144 PHA03398 viral phosphatase sup 98.8 2.6E-08 5.7E-13 76.1 6.9 85 117-204 151-266 (303)
145 smart00775 LNS2 LNS2 domain. T 98.7 1.3E-07 2.9E-12 67.0 9.2 94 115-214 28-142 (157)
146 TIGR02461 osmo_MPG_phos mannos 98.7 1.2E-07 2.7E-12 71.5 9.3 43 171-215 179-223 (225)
147 TIGR01675 plant-AP plant acid 98.7 2.2E-07 4.8E-12 69.2 10.4 97 113-218 119-222 (229)
148 PF03767 Acid_phosphat_B: HAD 98.6 1.5E-08 3.2E-13 76.3 1.7 97 114-218 115-222 (229)
149 COG4996 Predicted phosphatase 98.6 1.9E-07 4E-12 61.7 6.0 82 113-200 40-126 (164)
150 TIGR01680 Veg_Stor_Prot vegeta 98.5 1.2E-06 2.7E-11 66.4 9.5 98 113-218 144-249 (275)
151 PRK11033 zntA zinc/cadmium/mer 98.5 9.3E-07 2E-11 78.0 9.9 112 114-247 568-681 (741)
152 TIGR01116 ATPase-IIA1_Ca sarco 98.4 1.5E-06 3.3E-11 78.5 9.6 128 114-248 537-684 (917)
153 PLN02382 probable sucrose-phos 98.4 1.1E-06 2.5E-11 72.1 7.8 47 170-218 172-222 (413)
154 PLN02177 glycerol-3-phosphate 98.4 1.1E-05 2.4E-10 67.5 13.4 112 92-216 91-213 (497)
155 COG2503 Predicted secreted aci 98.4 4.6E-06 9.9E-11 61.5 8.9 82 114-206 122-208 (274)
156 COG5663 Uncharacterized conser 98.3 3.6E-06 7.9E-11 58.2 7.9 120 114-251 72-191 (194)
157 PF11019 DUF2608: Protein of u 98.3 3.9E-05 8.5E-10 58.7 13.4 103 114-218 81-209 (252)
158 TIGR01497 kdpB K+-transporting 98.3 6.4E-06 1.4E-10 71.2 10.0 114 114-247 446-561 (675)
159 COG3700 AphA Acid phosphatase 98.3 1.8E-05 3.8E-10 55.5 9.8 92 118-220 118-213 (237)
160 PRK14010 potassium-transportin 98.2 3.7E-06 8E-11 72.7 7.6 115 114-248 441-557 (673)
161 COG2217 ZntA Cation transport 98.2 3.9E-06 8.3E-11 72.9 7.2 114 114-247 537-652 (713)
162 PF05116 S6PP: Sucrose-6F-phos 98.2 3.9E-07 8.5E-12 69.7 0.9 45 171-218 163-207 (247)
163 PRK01122 potassium-transportin 98.2 1.8E-05 3.9E-10 68.7 9.9 115 114-248 445-561 (679)
164 TIGR01524 ATPase-IIIB_Mg magne 98.1 2E-05 4.2E-10 71.0 9.8 124 114-248 515-656 (867)
165 PRK10517 magnesium-transportin 98.1 1.9E-05 4.2E-10 71.2 9.2 124 114-248 550-691 (902)
166 PLN02645 phosphoglycolate phos 98.1 2.3E-05 4.9E-10 62.3 8.5 90 114-216 44-136 (311)
167 TIGR01517 ATPase-IIB_Ca plasma 98.1 3.7E-05 7.9E-10 70.0 10.3 127 114-248 579-723 (941)
168 PRK15122 magnesium-transportin 98.0 2.7E-05 5.8E-10 70.4 8.6 124 114-248 550-691 (903)
169 PF08235 LNS2: LNS2 (Lipin/Ned 98.0 4.4E-05 9.5E-10 53.4 7.7 99 115-214 28-142 (157)
170 TIGR01523 ATPase-IID_K-Na pota 98.0 5.3E-05 1.2E-09 69.5 10.3 129 114-248 646-800 (1053)
171 COG5610 Predicted hydrolase (H 98.0 2.5E-05 5.3E-10 62.9 6.5 101 114-217 97-201 (635)
172 TIGR02250 FCP1_euk FCP1-like p 97.9 2.3E-05 5.1E-10 55.4 5.5 80 113-200 57-137 (156)
173 KOG0207 Cation transport ATPas 97.9 5.2E-05 1.1E-09 66.1 7.7 114 114-247 723-838 (951)
174 TIGR01647 ATPase-IIIA_H plasma 97.9 8.3E-05 1.8E-09 66.1 9.2 123 114-248 442-588 (755)
175 COG4030 Uncharacterized protei 97.8 0.0022 4.7E-08 47.2 13.9 42 113-155 82-123 (315)
176 COG3769 Predicted hydrolase (H 97.8 0.00067 1.5E-08 49.6 10.9 40 1-40 1-42 (274)
177 TIGR00685 T6PP trehalose-phosp 97.8 7E-05 1.5E-09 57.4 6.4 69 173-249 167-242 (244)
178 PLN02499 glycerol-3-phosphate 97.7 0.003 6.5E-08 52.5 14.9 183 6-218 7-197 (498)
179 TIGR01106 ATPase-IIC_X-K sodiu 97.7 0.00028 6.2E-09 64.7 9.8 129 114-248 568-738 (997)
180 KOG2961 Predicted hydrolase (H 97.7 0.00056 1.2E-08 46.9 8.2 94 114-219 61-168 (190)
181 TIGR01484 HAD-SF-IIB HAD-super 97.6 5.6E-05 1.2E-09 56.3 3.3 46 169-216 159-204 (204)
182 PRK10187 trehalose-6-phosphate 97.6 0.00021 4.6E-09 55.4 6.3 69 171-250 172-244 (266)
183 TIGR01689 EcbF-BcbF capsule bi 97.6 9.3E-05 2E-09 50.1 3.7 30 115-144 25-54 (126)
184 PF05761 5_nucleotid: 5' nucle 97.5 9E-05 2E-09 61.2 4.0 102 115-219 184-325 (448)
185 KOG2470 Similar to IMP-GMP spe 97.5 0.0033 7.2E-08 49.3 12.0 101 117-218 243-375 (510)
186 COG0474 MgtA Cation transport 97.5 0.00097 2.1E-08 60.7 9.8 129 114-248 547-693 (917)
187 PTZ00174 phosphomannomutase; P 97.5 0.0001 2.2E-09 56.6 3.2 43 170-218 185-231 (247)
188 TIGR02245 HAD_IIID1 HAD-superf 97.5 0.0015 3.2E-08 47.9 8.9 83 114-201 45-140 (195)
189 TIGR01657 P-ATPase-V P-type AT 97.4 0.002 4.4E-08 59.6 11.2 124 114-248 656-853 (1054)
190 COG3882 FkbH Predicted enzyme 97.4 0.00071 1.5E-08 55.3 7.0 89 115-212 256-348 (574)
191 TIGR01652 ATPase-Plipid phosph 97.3 0.0015 3.3E-08 60.5 9.6 127 114-246 631-819 (1057)
192 KOG0202 Ca2+ transporting ATPa 97.3 0.0021 4.6E-08 56.1 9.2 127 114-248 584-732 (972)
193 PF05152 DUF705: Protein of un 97.3 0.0018 3.9E-08 49.4 7.5 49 117-167 145-193 (297)
194 COG0647 NagD Predicted sugar p 97.2 0.0019 4.2E-08 49.7 7.6 53 114-168 24-80 (269)
195 TIGR01494 ATPase_P-type ATPase 97.2 0.0014 3E-08 55.8 7.3 106 114-247 347-454 (499)
196 TIGR01452 PGP_euk phosphoglyco 97.2 0.0015 3.2E-08 51.2 6.7 88 114-215 18-108 (279)
197 PF05822 UMPH-1: Pyrimidine 5' 97.1 0.0052 1.1E-07 46.5 8.6 97 112-214 88-203 (246)
198 TIGR01484 HAD-SF-IIB HAD-super 97.0 0.0011 2.4E-08 49.3 4.4 31 120-150 23-53 (204)
199 PF03031 NIF: NLI interacting 96.9 0.00099 2.1E-08 47.5 3.2 82 113-200 35-116 (159)
200 TIGR01658 EYA-cons_domain eyes 96.9 0.0045 9.7E-08 46.2 6.4 80 133-218 178-257 (274)
201 PRK10187 trehalose-6-phosphate 96.9 0.0021 4.5E-08 50.0 5.0 36 117-152 39-75 (266)
202 KOG2134 Polynucleotide kinase 96.8 0.0057 1.2E-07 48.8 6.8 98 114-215 104-230 (422)
203 PF06189 5-nucleotidase: 5'-nu 96.7 0.014 3.1E-07 44.2 8.0 72 131-222 187-261 (264)
204 KOG2469 IMP-GMP specific 5'-nu 96.7 0.083 1.8E-06 42.7 12.6 100 117-219 201-334 (424)
205 PLN02423 phosphomannomutase 96.6 0.0018 4E-08 49.6 3.3 43 170-219 186-232 (245)
206 PLN03190 aminophospholipid tra 96.6 0.024 5.3E-07 53.1 10.8 52 191-247 872-923 (1178)
207 COG2216 KdpB High-affinity K+ 96.5 0.0032 7E-08 52.1 3.9 89 115-218 448-536 (681)
208 KOG3128 Uncharacterized conser 96.3 0.01 2.2E-07 44.5 5.2 97 113-210 137-247 (298)
209 PLN02580 trehalose-phosphatase 95.9 0.011 2.4E-07 48.0 4.2 67 174-249 302-376 (384)
210 TIGR01457 HAD-SF-IIA-hyp2 HAD- 95.8 0.03 6.4E-07 43.1 6.1 102 114-218 17-143 (249)
211 PRK10444 UMP phosphatase; Prov 95.8 0.089 1.9E-06 40.5 8.6 102 114-218 17-142 (248)
212 KOG1618 Predicted phosphatase 95.8 0.065 1.4E-06 41.9 7.6 86 114-216 51-144 (389)
213 KOG2116 Protein involved in pl 95.8 0.084 1.8E-06 45.2 8.7 95 118-214 562-673 (738)
214 PLN02580 trehalose-phosphatase 95.8 0.044 9.5E-07 44.7 6.9 30 7-36 119-153 (384)
215 PLN02151 trehalose-phosphatase 95.6 0.018 3.8E-07 46.3 4.1 68 175-250 271-345 (354)
216 TIGR01458 HAD-SF-IIA-hyp3 HAD- 95.3 0.027 5.8E-07 43.6 4.2 51 114-166 21-74 (257)
217 KOG0206 P-type ATPase [General 95.3 1.3 2.8E-05 41.5 15.2 30 114-143 651-680 (1151)
218 COG4502 5'(3')-deoxyribonucleo 95.3 0.011 2.3E-07 40.2 1.6 105 113-249 67-177 (180)
219 PRK14501 putative bifunctional 95.2 0.057 1.2E-06 48.4 6.6 67 172-250 656-724 (726)
220 COG1877 OtsB Trehalose-6-phosp 95.1 0.042 9.1E-07 42.4 4.5 43 174-218 183-228 (266)
221 PRK14501 putative bifunctional 94.9 0.038 8.3E-07 49.5 4.4 36 117-152 517-553 (726)
222 KOG2882 p-Nitrophenyl phosphat 94.9 0.32 7E-06 37.9 8.7 92 114-218 38-132 (306)
223 KOG0210 P-type ATPase [Inorgan 94.6 0.59 1.3E-05 40.9 10.4 52 190-247 781-833 (1051)
224 PLN02205 alpha,alpha-trehalose 94.0 0.21 4.5E-06 45.5 7.1 70 172-251 761-846 (854)
225 PLN02423 phosphomannomutase 93.7 0.095 2.1E-06 40.2 3.9 32 5-36 4-36 (245)
226 PTZ00174 phosphomannomutase; P 93.7 0.11 2.4E-06 40.0 4.2 36 5-40 3-41 (247)
227 KOG3040 Predicted sugar phosph 93.6 0.53 1.2E-05 34.7 7.2 88 115-216 24-114 (262)
228 KOG0204 Calcium transporting A 93.5 0.88 1.9E-05 40.8 9.6 124 114-248 647-793 (1034)
229 KOG4549 Magnesium-dependent ph 93.0 0.57 1.2E-05 31.4 6.0 83 113-201 43-133 (144)
230 KOG3107 Predicted haloacid deh 92.6 0.36 7.9E-06 38.7 5.5 81 131-218 371-451 (468)
231 PF03031 NIF: NLI interacting 92.5 0.069 1.5E-06 37.9 1.5 16 8-23 1-16 (159)
232 TIGR01460 HAD-SF-IIA Haloacid 92.5 0.45 9.7E-06 36.3 5.9 85 114-213 14-102 (236)
233 COG5083 SMP2 Uncharacterized p 92.3 0.76 1.6E-05 37.8 7.0 21 193-214 497-517 (580)
234 KOG0209 P-type ATPase [Inorgan 92.0 0.92 2E-05 40.6 7.7 42 113-154 674-715 (1160)
235 COG4850 Uncharacterized conser 91.9 1.3 2.9E-05 34.9 7.7 90 114-206 196-293 (373)
236 PRK00192 mannosyl-3-phosphogly 91.8 0.28 6E-06 38.3 4.2 40 116-155 23-62 (273)
237 TIGR00685 T6PP trehalose-phosp 91.6 0.18 3.9E-06 38.7 3.0 16 7-22 3-18 (244)
238 PF02571 CbiJ: Precorrin-6x re 91.5 5.3 0.00011 30.8 11.9 124 112-248 111-249 (249)
239 PLN03017 trehalose-phosphatase 91.3 0.17 3.7E-06 41.0 2.5 70 173-250 283-359 (366)
240 TIGR02461 osmo_MPG_phos mannos 91.0 0.36 7.8E-06 36.5 4.0 39 117-155 18-56 (225)
241 PLN03064 alpha,alpha-trehalose 90.7 0.42 9.1E-06 43.8 4.7 38 114-151 622-660 (934)
242 TIGR01456 CECR5 HAD-superfamil 90.6 0.5 1.1E-05 37.9 4.6 86 114-216 16-109 (321)
243 TIGR01487 SPP-like sucrose-pho 90.3 0.42 9.1E-06 35.8 3.8 41 115-155 19-59 (215)
244 PRK10513 sugar phosphate phosp 89.7 0.61 1.3E-05 36.3 4.4 39 117-155 23-61 (270)
245 TIGR02463 MPGP_rel mannosyl-3- 89.5 0.56 1.2E-05 35.3 3.9 36 119-154 21-56 (221)
246 PLN02151 trehalose-phosphatase 89.4 1.4 3E-05 35.7 6.2 31 7-37 98-133 (354)
247 PLN03017 trehalose-phosphatase 89.1 2.1 4.6E-05 34.8 7.0 30 7-36 111-145 (366)
248 PLN03063 alpha,alpha-trehalose 89.0 0.6 1.3E-05 42.4 4.4 20 232-251 766-785 (797)
249 PRK01158 phosphoglycolate phos 88.9 0.57 1.2E-05 35.4 3.7 39 117-155 23-61 (230)
250 KOG3189 Phosphomannomutase [Li 88.9 0.4 8.7E-06 35.0 2.6 29 8-36 12-40 (252)
251 COG0561 Cof Predicted hydrolas 88.7 0.73 1.6E-05 35.7 4.2 41 115-155 21-61 (264)
252 PRK12702 mannosyl-3-phosphogly 88.5 0.76 1.6E-05 36.1 4.0 39 117-155 21-59 (302)
253 TIGR00099 Cof-subfamily Cof su 88.3 0.74 1.6E-05 35.5 4.0 39 117-155 19-57 (256)
254 PRK15126 thiamin pyrimidine py 88.2 0.61 1.3E-05 36.4 3.5 39 117-155 22-60 (272)
255 KOG0323 TFIIF-interacting CTD 87.8 1.5 3.3E-05 38.2 5.7 88 113-209 200-288 (635)
256 PRK10976 putative hydrolase; P 87.7 0.77 1.7E-05 35.6 3.8 39 117-155 22-60 (266)
257 PRK10530 pyridoxal phosphate ( 87.7 0.88 1.9E-05 35.4 4.1 40 116-155 22-61 (272)
258 TIGR01482 SPP-subfamily Sucros 87.3 0.89 1.9E-05 34.2 3.8 39 117-155 18-56 (225)
259 PLN02205 alpha,alpha-trehalose 86.9 0.56 1.2E-05 42.8 2.8 31 6-36 595-628 (854)
260 TIGR01486 HAD-SF-IIB-MPGP mann 86.8 0.98 2.1E-05 34.9 3.9 38 118-155 20-57 (256)
261 PRK03669 mannosyl-3-phosphogly 86.5 0.82 1.8E-05 35.7 3.3 38 117-154 27-64 (271)
262 COG0731 Fe-S oxidoreductases [ 86.1 2.8 6E-05 33.0 5.9 107 112-225 90-217 (296)
263 TIGR02468 sucrsPsyn_pln sucros 84.6 7.9 0.00017 36.3 8.8 70 143-219 925-1002(1050)
264 PF02358 Trehalose_PPase: Treh 84.5 0.83 1.8E-05 34.8 2.5 39 173-213 165-206 (235)
265 KOG0203 Na+/K+ ATPase, alpha s 83.2 2.1 4.6E-05 38.4 4.5 102 114-216 590-730 (1019)
266 smart00577 CPDc catalytic doma 82.9 0.94 2E-05 31.7 2.0 17 7-23 2-18 (148)
267 TIGR02251 HIF-SF_euk Dullard-l 82.2 0.88 1.9E-05 32.5 1.6 16 8-23 2-17 (162)
268 TIGR00715 precor6x_red precorr 79.5 27 0.00059 27.1 9.5 63 176-250 187-255 (256)
269 TIGR02250 FCP1_euk FCP1-like p 79.4 1.5 3.2E-05 31.1 2.0 18 6-23 5-22 (156)
270 PF09949 DUF2183: Uncharacteri 78.8 8.8 0.00019 24.9 5.3 33 173-208 50-82 (100)
271 KOG0207 Cation transport ATPas 77.0 23 0.0005 32.6 8.7 82 115-218 687-768 (951)
272 PF04007 DUF354: Protein of un 76.4 15 0.00032 29.9 7.0 90 119-219 16-111 (335)
273 COG1834 N-Dimethylarginine dim 75.3 20 0.00043 27.9 7.1 88 120-210 41-147 (267)
274 cd02071 MM_CoA_mut_B12_BD meth 75.3 22 0.00048 23.9 7.4 92 119-218 16-109 (122)
275 KOG1618 Predicted phosphatase 73.3 5.6 0.00012 31.6 3.7 48 171-218 270-340 (389)
276 TIGR03278 methan_mark_10 putat 72.1 58 0.0013 27.3 14.1 71 85-155 48-131 (404)
277 COG0052 RpsB Ribosomal protein 71.7 44 0.00095 25.7 8.4 45 191-241 157-204 (252)
278 PRK11840 bifunctional sulfur c 71.7 44 0.00095 26.9 8.3 96 113-219 177-279 (326)
279 PRK13762 tRNA-modifying enzyme 71.2 13 0.00028 30.0 5.6 29 114-142 142-170 (322)
280 PLN02887 hydrolase family prot 70.3 4.6 0.0001 35.3 3.1 41 114-154 325-365 (580)
281 TIGR00236 wecB UDP-N-acetylglu 70.2 19 0.00041 29.4 6.5 97 119-218 16-117 (365)
282 COG2099 CobK Precorrin-6x redu 69.9 49 0.0011 25.6 10.6 100 113-220 111-231 (257)
283 PF02593 dTMP_synthase: Thymid 69.7 25 0.00054 26.5 6.4 96 114-217 59-160 (217)
284 cd01994 Alpha_ANH_like_IV This 68.8 44 0.00096 24.7 7.7 31 191-223 89-125 (194)
285 TIGR01485 SPP_plant-cyano sucr 68.8 4.3 9.3E-05 31.2 2.4 39 117-155 24-62 (249)
286 cd04728 ThiG Thiazole synthase 68.3 53 0.0011 25.3 8.5 96 112-219 102-205 (248)
287 PRK10076 pyruvate formate lyas 68.3 27 0.00059 26.2 6.4 59 84-142 12-79 (213)
288 KOG0208 Cation transport ATPas 68.1 47 0.001 31.1 8.6 28 114-141 705-732 (1140)
289 COG3769 Predicted hydrolase (H 66.9 7.6 0.00017 29.2 3.1 37 118-154 27-63 (274)
290 PRK00994 F420-dependent methyl 66.7 56 0.0012 25.0 9.0 65 90-154 42-111 (277)
291 PF05761 5_nucleotid: 5' nucle 66.2 6.5 0.00014 33.2 3.0 20 4-23 9-28 (448)
292 PF06014 DUF910: Bacterial pro 65.4 2.6 5.7E-05 24.5 0.4 25 178-208 7-31 (62)
293 PRK14502 bifunctional mannosyl 65.2 8.7 0.00019 34.2 3.7 39 117-155 436-474 (694)
294 PF02350 Epimerase_2: UDP-N-ac 64.2 20 0.00044 29.2 5.5 88 125-219 2-99 (346)
295 PRK08057 cobalt-precorrin-6x r 63.4 16 0.00036 28.1 4.6 122 113-250 111-247 (248)
296 KOG2467 Glycine/serine hydroxy 61.4 12 0.00027 30.5 3.6 78 115-216 326-404 (477)
297 PF06437 ISN1: IMP-specific 5' 60.9 14 0.00029 30.3 3.8 45 172-219 348-400 (408)
298 PRK00994 F420-dependent methyl 60.3 75 0.0016 24.3 8.3 87 123-218 23-116 (277)
299 KOG2832 TFIIF-interacting CTD 60.0 50 0.0011 27.0 6.6 79 115-200 215-293 (393)
300 KOG1605 TFIIF-interacting CTD 59.1 6.2 0.00013 30.6 1.6 89 114-214 131-224 (262)
301 TIGR02495 NrdG2 anaerobic ribo 58.5 69 0.0015 23.3 7.1 29 114-142 74-102 (191)
302 TIGR02329 propionate_PrpR prop 58.0 71 0.0015 27.9 7.9 86 118-219 85-171 (526)
303 PRK00208 thiG thiazole synthas 58.0 86 0.0019 24.2 8.5 96 112-219 102-205 (250)
304 COG0541 Ffh Signal recognition 56.0 41 0.00089 28.3 5.8 55 163-218 186-247 (451)
305 PF02358 Trehalose_PPase: Treh 54.9 7.6 0.00016 29.6 1.5 26 11-36 1-31 (235)
306 COG1817 Uncharacterized protei 54.7 94 0.002 25.0 7.2 37 118-155 15-51 (346)
307 KOG0780 Signal recognition par 53.9 58 0.0013 27.1 6.2 55 163-218 187-248 (483)
308 PLN02334 ribulose-phosphate 3- 53.6 96 0.0021 23.5 9.8 97 118-219 103-203 (229)
309 TIGR00877 purD phosphoribosyla 53.5 1.2E+02 0.0025 25.5 8.5 118 117-249 51-172 (423)
310 TIGR03365 Bsubt_queE 7-cyano-7 53.2 14 0.0003 28.3 2.7 29 114-142 84-112 (238)
311 TIGR00661 MJ1255 conserved hyp 53.0 1.1E+02 0.0024 24.5 7.9 25 194-218 96-120 (321)
312 PF13580 SIS_2: SIS domain; PD 52.9 73 0.0016 21.9 6.2 95 120-218 25-137 (138)
313 PRK05301 pyrroloquinoline quin 52.9 60 0.0013 26.8 6.5 29 113-141 73-101 (378)
314 TIGR02109 PQQ_syn_pqqE coenzym 52.6 50 0.0011 27.0 6.0 28 114-141 65-92 (358)
315 KOG0205 Plasma membrane H+-tra 52.3 46 0.001 29.7 5.7 101 116-218 494-611 (942)
316 COG4943 Predicted signal trans 52.1 1.6E+02 0.0034 25.4 8.9 38 117-154 401-438 (524)
317 TIGR01858 tag_bisphos_ald clas 51.9 88 0.0019 24.8 6.9 99 119-223 4-107 (282)
318 COG0191 Fba Fructose/tagatose 51.2 44 0.00095 26.4 5.0 98 118-223 5-110 (286)
319 PF01993 MTD: methylene-5,6,7, 51.1 46 0.001 25.5 4.9 65 90-154 41-110 (276)
320 PF06506 PrpR_N: Propionate ca 50.7 23 0.0005 25.6 3.4 85 115-218 59-150 (176)
321 cd05014 SIS_Kpsf KpsF-like pro 50.4 23 0.0005 23.7 3.2 29 117-145 61-89 (128)
322 KOG0208 Cation transport ATPas 49.6 37 0.0008 31.7 4.9 91 117-212 650-744 (1140)
323 cd05008 SIS_GlmS_GlmD_1 SIS (S 49.3 25 0.00054 23.5 3.2 29 117-145 60-88 (126)
324 PRK15424 propionate catabolism 49.0 1.2E+02 0.0025 26.7 7.7 84 119-218 96-180 (538)
325 COG0381 WecB UDP-N-acetylgluco 48.8 50 0.0011 27.3 5.2 94 119-218 19-123 (383)
326 TIGR03609 S_layer_CsaB polysac 48.3 1.3E+02 0.0029 23.6 7.7 37 174-218 240-276 (298)
327 TIGR00262 trpA tryptophan synt 48.0 1.3E+02 0.0028 23.4 9.0 97 115-218 125-227 (256)
328 PF04413 Glycos_transf_N: 3-De 47.7 18 0.00038 26.5 2.4 74 120-204 108-184 (186)
329 PRK08883 ribulose-phosphate 3- 47.5 1.2E+02 0.0026 22.9 8.5 100 116-218 92-195 (220)
330 COG5426 Uncharacterized membra 47.5 69 0.0015 23.6 5.2 80 114-200 29-120 (254)
331 TIGR02471 sucr_syn_bact_C sucr 47.3 20 0.00044 27.1 2.8 29 126-154 26-54 (236)
332 PLN02591 tryptophan synthase 46.6 1.4E+02 0.003 23.2 8.7 98 116-218 117-218 (250)
333 PRK13789 phosphoribosylamine-- 46.3 1.8E+02 0.004 24.6 8.5 119 117-250 55-176 (426)
334 COG4483 Uncharacterized protei 46.2 17 0.00036 21.3 1.6 25 178-208 7-31 (68)
335 cd05710 SIS_1 A subgroup of th 46.1 33 0.00072 22.9 3.4 29 117-145 61-89 (120)
336 KOG1605 TFIIF-interacting CTD 45.5 2.9 6.2E-05 32.4 -2.1 17 6-22 88-104 (262)
337 COG1927 Mtd Coenzyme F420-depe 45.3 1.3E+02 0.0028 22.6 7.0 41 114-154 71-111 (277)
338 PRK13790 phosphoribosylamine-- 45.3 1.8E+02 0.0038 24.1 8.9 117 118-250 15-135 (379)
339 COG1117 PstB ABC-type phosphat 45.1 1.3E+02 0.0028 23.0 6.3 27 118-145 187-213 (253)
340 TIGR02370 pyl_corrinoid methyl 45.1 1E+02 0.0022 22.8 6.1 88 121-216 103-191 (197)
341 PRK02261 methylaspartate mutas 44.3 1E+02 0.0023 21.2 7.7 91 120-218 21-119 (137)
342 TIGR01369 CPSaseII_lrg carbamo 44.2 2.8E+02 0.0061 26.8 10.1 70 173-250 126-195 (1050)
343 PF06189 5-nucleotidase: 5'-nu 43.7 1.2E+02 0.0027 23.6 6.3 71 130-218 36-109 (264)
344 PF09269 DUF1967: Domain of un 43.6 23 0.0005 21.1 2.0 24 176-200 43-66 (69)
345 smart00266 CAD Domains present 43.6 16 0.00035 22.1 1.4 17 7-23 38-54 (74)
346 cd06537 CIDE_N_B CIDE_N domain 43.1 17 0.00037 22.5 1.4 17 7-23 39-55 (81)
347 TIGR03470 HpnH hopanoid biosyn 43.0 33 0.00072 27.6 3.5 29 113-141 83-111 (318)
348 cd06539 CIDE_N_A CIDE_N domain 42.9 17 0.00037 22.3 1.4 17 7-23 40-56 (78)
349 PRK05294 carB carbamoyl phosph 42.8 3.3E+02 0.0071 26.5 10.5 68 174-249 128-195 (1066)
350 PF02350 Epimerase_2: UDP-N-ac 42.5 1.4E+02 0.003 24.4 7.0 65 176-250 250-316 (346)
351 PF05690 ThiG: Thiazole biosyn 42.2 1.6E+02 0.0034 22.7 8.4 96 112-219 102-205 (247)
352 TIGR03590 PseG pseudaminic aci 41.8 1.7E+02 0.0037 23.0 9.7 19 121-139 44-62 (279)
353 PRK08185 hypothetical protein; 41.7 62 0.0013 25.6 4.7 98 120-221 2-101 (283)
354 PF01380 SIS: SIS domain SIS d 41.5 56 0.0012 21.7 4.1 29 118-146 68-96 (131)
355 PRK06856 DNA polymerase III su 40.9 1.2E+02 0.0025 20.8 5.6 64 125-196 7-70 (128)
356 COG0761 lytB 4-Hydroxy-3-methy 40.7 1.3E+02 0.0029 23.8 6.1 45 175-226 227-271 (294)
357 PF13607 Succ_CoA_lig: Succiny 40.7 1.2E+02 0.0026 21.0 7.4 116 121-247 16-136 (138)
358 PRK13717 conjugal transfer pro 40.1 35 0.00076 23.1 2.6 17 4-20 42-58 (128)
359 PRK06524 biotin carboxylase-li 39.9 2E+02 0.0043 25.0 7.6 112 121-249 95-213 (493)
360 PF05872 DUF853: Bacterial pro 39.8 37 0.0008 28.8 3.3 35 119-153 279-313 (502)
361 PRK07084 fructose-bisphosphate 39.8 1.4E+02 0.003 24.2 6.4 103 118-223 11-120 (321)
362 PF13382 Adenine_deam_C: Adeni 39.7 40 0.00087 24.4 3.1 64 183-248 59-126 (171)
363 PF06901 FrpC: RTX iron-regula 39.5 20 0.00044 26.2 1.5 14 8-21 59-72 (271)
364 PRK12815 carB carbamoyl phosph 39.4 3.7E+02 0.008 26.1 10.6 118 120-252 31-198 (1068)
365 TIGR02826 RNR_activ_nrdG3 anae 39.1 31 0.00068 24.2 2.5 25 117-141 75-99 (147)
366 cd01615 CIDE_N CIDE_N domain, 38.4 22 0.00047 21.9 1.4 16 8-23 41-56 (78)
367 TIGR03595 Obg_CgtA_exten Obg f 38.1 39 0.00084 20.1 2.4 23 177-200 44-66 (69)
368 COG2897 SseA Rhodanese-related 37.9 85 0.0019 24.9 4.9 48 170-219 70-123 (285)
369 PRK10671 copA copper exporting 37.1 21 0.00046 33.0 1.7 20 4-23 514-533 (834)
370 TIGR03127 RuMP_HxlB 6-phospho 37.0 48 0.0011 23.8 3.3 30 117-146 86-115 (179)
371 KOG1154 Gamma-glutamyl kinase 36.9 51 0.0011 25.2 3.3 31 119-149 37-67 (285)
372 TIGR03679 arCOG00187 arCOG0018 36.8 1.8E+02 0.004 21.9 8.0 27 191-218 87-119 (218)
373 COG0253 DapF Diaminopimelate e 36.7 65 0.0014 25.3 4.0 46 148-198 4-50 (272)
374 PF08620 RPAP1_C: RPAP1-like, 36.6 15 0.00033 22.2 0.5 9 11-19 4-12 (73)
375 PRK12737 gatY tagatose-bisphos 36.6 1.8E+02 0.004 23.0 6.6 100 118-223 5-109 (284)
376 PF05673 DUF815: Protein of un 36.1 2.1E+02 0.0045 22.3 6.7 77 119-199 69-148 (249)
377 cd06536 CIDE_N_ICAD CIDE_N dom 35.9 24 0.00053 21.8 1.3 16 8-23 43-58 (80)
378 PF02254 TrkA_N: TrkA-N domain 35.9 1.2E+02 0.0027 19.6 7.8 91 114-217 25-115 (116)
379 PLN02588 glycerol-3-phosphate 35.9 9.9 0.00021 32.5 -0.5 27 7-33 50-76 (525)
380 PF13911 AhpC-TSA_2: AhpC/TSA 35.8 68 0.0015 21.0 3.7 34 121-154 4-37 (115)
381 COG4275 Uncharacterized conser 35.8 29 0.00064 23.4 1.8 41 7-48 45-85 (143)
382 TIGR00640 acid_CoA_mut_C methy 35.0 1.5E+02 0.0032 20.3 7.1 88 124-218 24-112 (132)
383 cd06589 GH31 The enzymes of gl 34.9 55 0.0012 25.5 3.5 28 114-141 63-90 (265)
384 PTZ00317 NADP-dependent malic 34.9 1.7E+02 0.0036 25.8 6.4 19 176-194 175-193 (559)
385 cd05006 SIS_GmhA Phosphoheptos 34.4 53 0.0011 23.6 3.1 27 117-143 115-141 (177)
386 PRK10886 DnaA initiator-associ 34.3 1.9E+02 0.0042 21.4 7.9 52 174-227 95-152 (196)
387 PF07085 DRTGG: DRTGG domain; 34.2 43 0.00094 21.7 2.4 40 180-223 33-73 (105)
388 cd01948 EAL EAL domain. This d 34.0 1.4E+02 0.003 22.3 5.6 94 119-216 134-228 (240)
389 PLN02257 phosphoribosylamine-- 34.0 3E+02 0.0064 23.4 8.7 115 118-249 50-169 (434)
390 cd05013 SIS_RpiR RpiR-like pro 33.9 71 0.0015 21.3 3.7 28 118-145 75-102 (139)
391 smart00540 LEM in nuclear memb 33.9 19 0.00041 19.4 0.5 30 120-149 9-38 (44)
392 COG5190 FCP1 TFIIF-interacting 33.9 1.1E+02 0.0025 25.4 5.1 81 116-203 254-334 (390)
393 cd06538 CIDE_N_FSP27 CIDE_N do 33.7 28 0.0006 21.5 1.3 16 8-23 40-55 (79)
394 PF03332 PMM: Eukaryotic phosp 33.6 94 0.002 23.5 4.3 52 181-250 166-219 (220)
395 PF04230 PS_pyruv_trans: Polys 33.4 2E+02 0.0042 21.8 6.5 38 173-218 246-283 (286)
396 COG0528 PyrH Uridylate kinase 33.3 58 0.0013 24.9 3.2 23 120-142 34-56 (238)
397 CHL00200 trpA tryptophan synth 33.1 2.4E+02 0.0052 22.1 8.7 99 115-218 129-231 (263)
398 PRK10017 colanic acid biosynth 32.9 3.1E+02 0.0067 23.3 8.3 82 120-218 263-353 (426)
399 PF03332 PMM: Eukaryotic phosp 32.9 42 0.00092 25.3 2.4 26 119-145 1-26 (220)
400 PRK13937 phosphoheptose isomer 32.9 59 0.0013 23.8 3.2 29 117-145 120-148 (188)
401 PHA03050 glutaredoxin; Provisi 32.8 1.4E+02 0.0031 19.5 8.1 73 121-200 4-79 (108)
402 PRK02186 argininosuccinate lya 32.6 3.6E+02 0.0079 25.5 8.8 115 118-249 57-174 (887)
403 COG2099 CobK Precorrin-6x redu 32.3 2.4E+02 0.0053 22.0 9.2 67 174-249 54-127 (257)
404 PF13535 ATP-grasp_4: ATP-gras 32.2 1.8E+02 0.004 20.5 6.3 67 174-249 4-71 (184)
405 KOG0391 SNF2 family DNA-depend 32.2 1.2E+02 0.0026 29.6 5.4 85 121-218 1267-1354(1958)
406 PF03603 DNA_III_psi: DNA poly 32.1 1.4E+02 0.003 20.4 4.6 106 124-243 7-112 (128)
407 cd05017 SIS_PGI_PMI_1 The memb 32.0 56 0.0012 21.7 2.8 24 117-140 57-80 (119)
408 TIGR00167 cbbA ketose-bisphosp 31.9 2.6E+02 0.0056 22.3 6.7 101 118-223 5-112 (288)
409 TIGR03568 NeuC_NnaA UDP-N-acet 31.6 1.8E+02 0.004 23.9 6.2 30 188-218 92-124 (365)
410 cd08185 Fe-ADH1 Iron-containin 31.5 2.7E+02 0.006 23.0 7.2 76 122-205 17-99 (380)
411 PRK05752 uroporphyrinogen-III 31.4 1.7E+02 0.0037 22.5 5.7 20 116-135 12-31 (255)
412 PRK13209 L-xylulose 5-phosphat 31.3 1.9E+02 0.004 22.6 6.0 14 235-248 163-176 (283)
413 PRK01018 50S ribosomal protein 31.2 89 0.0019 20.2 3.5 36 114-149 16-51 (99)
414 cd05005 SIS_PHI Hexulose-6-pho 31.0 67 0.0015 23.1 3.2 29 117-145 89-117 (179)
415 PRK00885 phosphoribosylamine-- 30.9 3.2E+02 0.007 22.9 8.6 116 118-250 50-170 (420)
416 PF00578 AhpC-TSA: AhpC/TSA fa 30.9 38 0.00083 22.3 1.8 37 118-154 47-83 (124)
417 cd04795 SIS SIS domain. SIS (S 30.9 55 0.0012 19.9 2.5 21 117-137 61-81 (87)
418 cd06595 GH31_xylosidase_XylS-l 30.9 71 0.0015 25.3 3.6 26 114-139 71-96 (292)
419 PRK06100 DNA polymerase III su 30.7 1.8E+02 0.004 20.0 5.6 88 124-219 7-94 (132)
420 TIGR03151 enACPred_II putative 30.6 2.9E+02 0.0062 22.2 7.5 91 120-218 99-190 (307)
421 TIGR00441 gmhA phosphoheptose 30.6 64 0.0014 22.7 3.0 28 117-144 93-120 (154)
422 cd06533 Glyco_transf_WecG_TagA 30.6 1.6E+02 0.0034 21.2 5.0 16 121-136 37-52 (171)
423 TIGR00237 xseA exodeoxyribonuc 30.4 3.3E+02 0.0071 23.2 7.5 64 131-197 130-194 (432)
424 PRK12738 kbaY tagatose-bisphos 30.3 2.5E+02 0.0054 22.4 6.4 99 119-223 6-109 (286)
425 PF06437 ISN1: IMP-specific 5' 30.3 26 0.00056 28.8 1.0 18 6-23 146-163 (408)
426 cd00947 TBP_aldolase_IIB Tagat 30.2 2.8E+02 0.006 22.0 6.9 98 120-223 2-104 (276)
427 cd01968 Nitrogenase_NifE_I Nit 29.7 3.4E+02 0.0073 22.8 9.6 39 173-218 343-381 (410)
428 COG1911 RPL30 Ribosomal protei 29.7 88 0.0019 20.1 3.0 38 114-151 19-56 (100)
429 PF08149 BING4CT: BING4CT (NUC 29.5 1E+02 0.0022 19.0 3.2 23 208-230 28-50 (80)
430 PF04312 DUF460: Protein of un 29.4 81 0.0018 21.8 3.1 34 7-40 43-79 (138)
431 cd02072 Glm_B12_BD B12 binding 29.3 1.9E+02 0.0041 19.8 7.8 89 123-218 20-115 (128)
432 COG1877 OtsB Trehalose-6-phosp 29.2 2E+02 0.0044 22.6 5.6 18 6-23 17-34 (266)
433 cd04906 ACT_ThrD-I_1 First of 29.2 66 0.0014 19.9 2.6 23 119-141 55-77 (85)
434 PRK07709 fructose-bisphosphate 28.9 3E+02 0.0065 21.9 7.6 102 118-223 5-112 (285)
435 PRK03692 putative UDP-N-acetyl 28.9 2E+02 0.0043 22.2 5.5 22 120-141 95-116 (243)
436 PRK04284 ornithine carbamoyltr 28.8 3.2E+02 0.007 22.3 9.7 95 117-221 88-190 (332)
437 PRK13210 putative L-xylulose 5 28.7 2.8E+02 0.0061 21.5 7.5 19 118-136 17-35 (284)
438 TIGR00542 hxl6Piso_put hexulos 28.6 2E+02 0.0044 22.4 5.8 17 118-134 17-33 (279)
439 PLN02735 carbamoyl-phosphate s 28.5 5.7E+02 0.012 25.0 10.1 122 120-251 47-214 (1102)
440 PF00390 malic: Malic enzyme, 28.4 23 0.00051 25.8 0.4 59 117-194 53-111 (182)
441 TIGR02765 crypto_DASH cryptoch 28.3 49 0.0011 27.9 2.4 34 121-154 65-98 (429)
442 PRK13602 putative ribosomal pr 28.2 1.1E+02 0.0023 19.0 3.3 35 114-148 11-45 (82)
443 cd01425 RPS2 Ribosomal protein 28.1 2.5E+02 0.0054 20.7 7.2 30 191-221 128-160 (193)
444 PRK07998 gatY putative fructos 28.0 1.9E+02 0.004 23.0 5.3 33 118-150 5-37 (283)
445 TIGR02494 PFLE_PFLC glycyl-rad 27.7 1.6E+02 0.0035 23.2 5.2 28 114-141 137-165 (295)
446 PRK07206 hypothetical protein; 27.7 3.6E+02 0.0078 22.5 9.4 115 118-249 58-178 (416)
447 PRK00414 gmhA phosphoheptose i 27.7 82 0.0018 23.2 3.2 28 117-144 125-152 (192)
448 TIGR02668 moaA_archaeal probab 27.6 2.1E+02 0.0046 22.6 5.8 28 114-141 68-96 (302)
449 COG1180 PflA Pyruvate-formate 27.4 45 0.00098 26.0 1.9 28 116-143 98-125 (260)
450 PRK00856 pyrB aspartate carbam 27.4 3.3E+02 0.0071 21.9 9.4 97 117-221 88-192 (305)
451 smart00481 POLIIIAc DNA polyme 27.4 87 0.0019 18.1 2.8 24 118-141 16-39 (67)
452 cd05015 SIS_PGI_1 Phosphogluco 27.3 2.3E+02 0.0049 20.0 7.7 84 129-218 48-137 (158)
453 PRK14021 bifunctional shikimat 27.3 4.4E+02 0.0094 23.3 8.1 96 117-219 195-303 (542)
454 TIGR01501 MthylAspMutase methy 27.0 2.2E+02 0.0047 19.7 8.1 93 119-218 18-117 (134)
455 PRK11145 pflA pyruvate formate 26.8 78 0.0017 24.2 3.1 27 115-141 83-110 (246)
456 KOG2826 Actin-related protein 26.8 42 0.0009 25.5 1.5 17 6-22 30-46 (301)
457 PRK09195 gatY tagatose-bisphos 26.7 3.3E+02 0.0071 21.7 6.7 99 119-223 6-109 (284)
458 PF03193 DUF258: Protein of un 26.7 1.5E+02 0.0032 21.2 4.2 55 120-182 2-56 (161)
459 KOG1014 17 beta-hydroxysteroid 26.6 1.7E+02 0.0038 23.5 4.9 58 120-186 63-123 (312)
460 cd06594 GH31_glucosidase_YihQ 26.5 92 0.002 25.1 3.5 26 114-139 68-93 (317)
461 KOG1257 NADP+-dependent malic 26.5 1.1E+02 0.0023 26.6 3.9 59 118-195 148-206 (582)
462 cd06591 GH31_xylosidase_XylS X 26.3 93 0.002 25.1 3.5 25 114-138 63-87 (319)
463 cd03018 PRX_AhpE_like Peroxire 26.2 79 0.0017 21.7 2.8 36 118-153 50-85 (149)
464 PRK11449 putative deoxyribonuc 26.0 3.2E+02 0.0069 21.3 7.4 22 118-139 20-41 (258)
465 PF05368 NmrA: NmrA-like famil 25.9 2.8E+02 0.0062 20.7 6.3 82 121-219 13-102 (233)
466 COG1058 CinA Predicted nucleot 25.8 1.1E+02 0.0024 23.8 3.7 46 172-219 20-68 (255)
467 cd06599 GH31_glycosidase_Aec37 25.8 96 0.0021 24.9 3.5 27 114-140 70-96 (317)
468 PF00532 Peripla_BP_1: Peripla 25.8 3.3E+02 0.0071 21.3 6.8 31 121-151 22-52 (279)
469 COG1922 WecG Teichoic acid bio 25.7 2.5E+02 0.0053 21.9 5.4 23 119-141 97-119 (253)
470 PF02142 MGS: MGS-like domain 25.6 49 0.0011 21.0 1.5 32 118-154 1-32 (95)
471 PF12812 PDZ_1: PDZ-like domai 25.6 1.7E+02 0.0036 17.9 4.7 17 234-250 60-76 (78)
472 PRK08005 epimerase; Validated 25.5 3E+02 0.0064 20.8 9.9 98 117-218 93-191 (210)
473 PRK10425 DNase TatD; Provision 25.5 3.3E+02 0.0071 21.2 7.6 24 117-140 15-38 (258)
474 CHL00162 thiG thiamin biosynth 25.5 3.3E+02 0.0072 21.3 10.4 95 113-219 117-219 (267)
475 PRK13938 phosphoheptose isomer 25.4 91 0.002 23.1 3.1 29 117-145 127-155 (196)
476 PRK01372 ddl D-alanine--D-alan 25.3 3.4E+02 0.0074 21.4 9.9 68 174-249 98-165 (304)
477 PF02017 CIDE-N: CIDE-N domain 25.2 56 0.0012 20.1 1.6 15 8-22 41-55 (78)
478 KOG1359 Glycine C-acetyltransf 25.2 91 0.002 24.9 3.1 93 118-220 275-377 (417)
479 cd06598 GH31_transferase_CtsZ 25.1 93 0.002 25.0 3.3 27 114-140 67-93 (317)
480 PF07453 NUMOD1: NUMOD1 domain 25.0 1E+02 0.0023 15.3 3.2 29 8-40 2-30 (37)
481 PF03808 Glyco_tran_WecB: Glyc 25.0 2.7E+02 0.0058 20.0 5.9 20 121-140 39-58 (172)
482 PF08444 Gly_acyl_tr_C: Aralky 25.0 93 0.002 19.7 2.6 34 121-154 43-76 (89)
483 PRK13529 malate dehydrogenase; 24.9 1.7E+02 0.0038 25.7 5.0 57 119-194 135-191 (563)
484 PF12261 T_hemolysin: Thermost 24.8 1.1E+02 0.0024 22.4 3.3 33 121-155 107-139 (179)
485 TIGR00670 asp_carb_tr aspartat 24.8 3.7E+02 0.008 21.6 10.0 96 117-222 83-187 (301)
486 PF04123 DUF373: Domain of unk 24.7 4E+02 0.0086 22.0 9.2 71 121-219 55-129 (344)
487 PF12017 Tnp_P_element: Transp 24.7 1.6E+02 0.0035 22.6 4.3 13 121-133 200-212 (236)
488 PF08353 DUF1727: Domain of un 24.7 1.4E+02 0.003 19.9 3.5 30 126-155 49-78 (113)
489 cd06592 GH31_glucosidase_KIAA1 24.6 1.1E+02 0.0023 24.5 3.6 26 114-139 67-92 (303)
490 cd02070 corrinoid_protein_B12- 24.6 2.9E+02 0.0064 20.4 6.8 88 121-216 101-189 (201)
491 cd00733 GlyRS_alpha_core Class 24.4 1.3E+02 0.0029 23.3 3.7 43 175-219 88-132 (279)
492 TIGR01369 CPSaseII_lrg carbamo 24.2 6.6E+02 0.014 24.5 9.0 116 119-249 618-736 (1050)
493 PRK13125 trpA tryptophan synth 24.2 3.3E+02 0.0072 20.9 8.5 95 117-218 116-214 (244)
494 PF05240 APOBEC_C: APOBEC-like 24.1 62 0.0014 18.4 1.5 23 118-140 3-25 (55)
495 PRK13936 phosphoheptose isomer 24.1 1E+02 0.0022 22.8 3.2 29 117-145 125-153 (197)
496 cd03017 PRX_BCP Peroxiredoxin 24.0 96 0.0021 20.9 2.9 36 119-154 46-81 (140)
497 PRK05294 carB carbamoyl phosph 23.9 6.8E+02 0.015 24.4 9.1 115 120-249 619-736 (1066)
498 PF14097 SpoVAE: Stage V sporu 23.8 2.8E+02 0.0061 20.1 5.0 24 119-142 12-36 (180)
499 cd06597 GH31_transferase_CtsY 23.7 1.1E+02 0.0024 24.9 3.6 25 115-139 83-107 (340)
500 cd06593 GH31_xylosidase_YicI Y 23.7 1.1E+02 0.0024 24.4 3.5 25 114-138 63-87 (308)
No 1
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=100.00 E-value=4e-33 Score=209.35 Aligned_cols=210 Identities=18% Similarity=0.192 Sum_probs=160.6
Q ss_pred CceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHH
Q 039449 6 RLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFV 85 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (253)
++++|+||+||||+|+...+..++..++++++......+.+... .|. +..+. +.
T Consensus 2 ~~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------~G~----~~~~~--------~~ 55 (214)
T PRK13288 2 KINTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPF--------------IGP----SLHDT--------FS 55 (214)
T ss_pred CccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHH--------------hCc----CHHHH--------HH
Confidence 58999999999999999999999999999998654443433321 122 21221 22
Q ss_pred HcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeec
Q 039449 86 RAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFS 165 (253)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~ 165 (253)
... +...+.+...+...+.... .....++||+.++|+.|+++|++++|+||+....+...++.+|+.. +|+.++.+
T Consensus 56 ~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~--~f~~i~~~ 131 (214)
T PRK13288 56 KID-ESKVEEMITTYREFNHEHH-DELVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDE--FFDVVITL 131 (214)
T ss_pred hcC-HHHHHHHHHHHHHHHHHhh-hhhcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh--ceeEEEec
Confidence 211 1122333333433332221 1234789999999999999999999999999999999999999998 99999998
Q ss_pred cccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhh-hcCCcccCCHHHHHH
Q 039449 166 GLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWR-KSGAIVLPDLVAVKE 244 (253)
Q Consensus 166 ~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~-~~~~~~i~~l~el~~ 244 (253)
+.....||+|+.+..++++++ ++++++++|||+. +|+.+|+++|++++++.+ +......+. ..++++++++.++.+
T Consensus 132 ~~~~~~Kp~p~~~~~~~~~~~-~~~~~~~~iGDs~-~Di~aa~~aG~~~i~v~~-g~~~~~~l~~~~~~~~i~~~~~l~~ 208 (214)
T PRK13288 132 DDVEHAKPDPEPVLKALELLG-AKPEEALMVGDNH-HDILAGKNAGTKTAGVAW-TIKGREYLEQYKPDFMLDKMSDLLA 208 (214)
T ss_pred CcCCCCCCCcHHHHHHHHHcC-CCHHHEEEECCCH-HHHHHHHHCCCeEEEEcC-CCCCHHHHhhcCcCEEECCHHHHHH
Confidence 888889999999999999999 9999999999999 899999999999999984 433333332 335689999999998
Q ss_pred HHhh
Q 039449 245 FLTS 248 (253)
Q Consensus 245 ~l~~ 248 (253)
++..
T Consensus 209 ~i~~ 212 (214)
T PRK13288 209 IVGD 212 (214)
T ss_pred HHhh
Confidence 8753
No 2
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=206.71 Aligned_cols=215 Identities=26% Similarity=0.383 Sum_probs=163.1
Q ss_pred ccCceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHH
Q 039449 4 LSRLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDS 83 (253)
Q Consensus 4 ~~~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (253)
++++++|+||+||||+|+...+..++..+++++|.+....+.+.... |.+. ...+.+.
T Consensus 1 ~~~~~~iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~i--------------g~~~--------~~~~~~~ 58 (220)
T COG0546 1 MMMIKAILFDLDGTLVDSAEDILRAFNAALAELGLPPLDEEEIRQLI--------------GLGL--------DELIERL 58 (220)
T ss_pred CCCCCEEEEeCCCccccChHHHHHHHHHHHHHcCCCCCCHHHHHHHh--------------cCCH--------HHHHHHH
Confidence 35689999999999999999999999999999999876666655422 2220 0112111
Q ss_pred HHHcCCCCC---hHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCccee
Q 039449 84 FVRAGYDYD---EDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWD 160 (253)
Q Consensus 84 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~ 160 (253)
......... .+.....+...+.... +..++||+.++|..|+++|++++|+||.+...++..++.+|+.. +|+
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~--~F~ 133 (220)
T COG0546 59 LGEADEEAAAELVERLREEFLTAYAELL---ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD--YFD 133 (220)
T ss_pred hccccchhHHHHHHHHHHHHHHHHHhhc---cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc--ccc
Confidence 111111111 1111222222222221 24789999999999999999999999999999999999999999 999
Q ss_pred EeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhh-hcCCcccCCH
Q 039449 161 FGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWR-KSGAIVLPDL 239 (253)
Q Consensus 161 ~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~-~~~~~~i~~l 239 (253)
.++........||+|..+..+++.++ +++++++||||+. +|+.+|+++|+++|.+.+ +....+... ..+++++.++
T Consensus 134 ~i~g~~~~~~~KP~P~~l~~~~~~~~-~~~~~~l~VGDs~-~Di~aA~~Ag~~~v~v~~-g~~~~~~l~~~~~d~vi~~~ 210 (220)
T COG0546 134 VIVGGDDVPPPKPDPEPLLLLLEKLG-LDPEEALMVGDSL-NDILAAKAAGVPAVGVTW-GYNSREELAQAGADVVIDSL 210 (220)
T ss_pred eEEcCCCCCCCCcCHHHHHHHHHHhC-CChhheEEECCCH-HHHHHHHHcCCCEEEEEC-CCCCCcchhhcCCCEEECCH
Confidence 98887778888999999999999999 8888999999999 899999999999999994 433333333 3466999999
Q ss_pred HHHHHHHhh
Q 039449 240 VAVKEFLTS 248 (253)
Q Consensus 240 ~el~~~l~~ 248 (253)
.||...+.+
T Consensus 211 ~el~~~l~~ 219 (220)
T COG0546 211 AELLALLAE 219 (220)
T ss_pred HHHHHHHhc
Confidence 999988754
No 3
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=100.00 E-value=1.2e-32 Score=207.81 Aligned_cols=213 Identities=20% Similarity=0.258 Sum_probs=161.9
Q ss_pred ceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHH
Q 039449 7 LRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVR 86 (253)
Q Consensus 7 ~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (253)
+|+|+||+||||+|+.+.+..++..+++++|.+... .+.... +.|. +.. ..++..+..
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~~-~~~~~~-------------~~g~----~~~----~~~~~~~~~ 58 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQAVTAAGLSPTP-EEVQSA-------------WMGQ----SKI----EAIRALLAL 58 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHHHHHcCCCCCH-HHHHHh-------------hcCC----CHH----HHHHHHHhc
Confidence 589999999999999999999999999999987532 222210 1222 222 224444444
Q ss_pred cCCCC-ChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC--CCcceeEee
Q 039449 87 AGYDY-DEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVN--QGTEWDFGV 163 (253)
Q Consensus 87 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~--~~~~f~~~~ 163 (253)
.+.+. ..+++...+...+..........++||+.++|++|+++|++++|+||+....++..++.+|+. . +|+.++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~--~f~~i~ 136 (220)
T TIGR03351 59 DGADEAEAQAAFADFEERLAEAYDDGPPVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGD--DVDAVV 136 (220)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhcccCCccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhc--cCCEEE
Confidence 44321 122333444444443332234589999999999999999999999999999999999999998 6 999999
Q ss_pred eccccCccCCCHHHHHHHHHHhCCCC-CCceEEEcCCcccchhhhhhcCCeE-EEEcCCCCCChhhhhhc-CCcccCCHH
Q 039449 164 FSGLEGVEKPDPRIYEIALERAGNIA-PEEALHIGDSFRKDYVPAKSVGMHA-LLVDRFKTPDAKEWRKS-GAIVLPDLV 240 (253)
Q Consensus 164 ~~~~~~~~kp~~~~~~~~~~~~~~~~-~~~~~~iGD~~~~Di~~a~~~G~~~-i~~~~~~~~~~~~~~~~-~~~~i~~l~ 240 (253)
++++....||+|+++..++++++ ++ +++|++|||++ +|+.+|+++|+.+ +++. ++......+... +++++.++.
T Consensus 137 ~~~~~~~~KP~p~~~~~a~~~~~-~~~~~~~~~igD~~-~Di~aa~~aG~~~~i~~~-~g~~~~~~~~~~~~~~~i~~~~ 213 (220)
T TIGR03351 137 CPSDVAAGRPAPDLILRAMELTG-VQDVQSVAVAGDTP-NDLEAGINAGAGAVVGVL-TGAHDAEELSRHPHTHVLDSVA 213 (220)
T ss_pred cCCcCCCCCCCHHHHHHHHHHcC-CCChhHeEEeCCCH-HHHHHHHHCCCCeEEEEe-cCCCcHHHHhhcCCceeecCHH
Confidence 99888889999999999999999 97 79999999999 8999999999999 8887 454444444333 447899999
Q ss_pred HHHHHH
Q 039449 241 AVKEFL 246 (253)
Q Consensus 241 el~~~l 246 (253)
++..++
T Consensus 214 ~l~~~~ 219 (220)
T TIGR03351 214 DLPALL 219 (220)
T ss_pred HHHHhh
Confidence 998765
No 4
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=2e-32 Score=207.01 Aligned_cols=214 Identities=19% Similarity=0.214 Sum_probs=159.5
Q ss_pred CceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHH
Q 039449 6 RLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFV 85 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (253)
++|+|+||+||||+|+...+..++..+++++|.+....+.+...++...... +.....
T Consensus 11 ~~k~viFD~DGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~g~~~~~~----------------------~~~~~~ 68 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSAPDMLATVNAMLAARGRAPITLAQLRPVVSKGARAM----------------------LAVAFP 68 (229)
T ss_pred cCCEEEEcCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhhhHHHHH----------------------HHHHhc
Confidence 4699999999999999999999999999999987655444443222221111 111111
Q ss_pred HcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeec
Q 039449 86 RAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFS 165 (253)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~ 165 (253)
... ....+++...+...+..... ....++||+.++|++|+++|++++++||+....+...++.+|+.. +|+.++.+
T Consensus 69 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~--~f~~i~~~ 144 (229)
T PRK13226 69 ELD-AAARDALIPEFLQRYEALIG-TQSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ--RCAVLIGG 144 (229)
T ss_pred cCC-hHHHHHHHHHHHHHHHHhhh-hcCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh--cccEEEec
Confidence 000 00112223333333333221 124789999999999999999999999999988888999999988 88887777
Q ss_pred cccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCC-Ch-hhhhhcCCcccCCHHHHH
Q 039449 166 GLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTP-DA-KEWRKSGAIVLPDLVAVK 243 (253)
Q Consensus 166 ~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~-~~-~~~~~~~~~~i~~l~el~ 243 (253)
...+..||+|+++..+++++| +++++|++|||+. +|+.+|+++|+++|++.+ +.. .. ......+++++.++.||.
T Consensus 145 ~~~~~~KP~p~~~~~~~~~l~-~~p~~~l~IGDs~-~Di~aA~~aG~~~i~v~~-g~~~~~~~~~~~~~~~~i~~~~el~ 221 (229)
T PRK13226 145 DTLAERKPHPLPLLVAAERIG-VAPTDCVYVGDDE-RDILAARAAGMPSVAALW-GYRLHDDDPLAWQADVLVEQPQLLW 221 (229)
T ss_pred CcCCCCCCCHHHHHHHHHHhC-CChhhEEEeCCCH-HHHHHHHHCCCcEEEEee-cCCCCCcChhhcCCCeeeCCHHHHH
Confidence 777888999999999999999 9999999999999 999999999999999984 332 22 222334679999999999
Q ss_pred HHHhh
Q 039449 244 EFLTS 248 (253)
Q Consensus 244 ~~l~~ 248 (253)
+.+..
T Consensus 222 ~~~~~ 226 (229)
T PRK13226 222 NPATW 226 (229)
T ss_pred HHhcC
Confidence 88764
No 5
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=100.00 E-value=5.3e-32 Score=201.71 Aligned_cols=203 Identities=46% Similarity=0.824 Sum_probs=163.4
Q ss_pred eEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHHc
Q 039449 8 RCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVRA 87 (253)
Q Consensus 8 k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (253)
|+|+||+||||+|+...+..++..+++++|++.. ..+....+...+......++.++...+++..++|..++...+...
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 79 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEIARKYGVEVS-PDELEQAFRRAFKAMSEAFPNFGFSSGLTPQQWWQKLVRDTFGRA 79 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999998753 333444555555555555555554435677778888888877776
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccc
Q 039449 88 GYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGL 167 (253)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~ 167 (253)
+.. +.+.+...+..++........+.++||+.++|++|+++|++++|+||+... ....++.+|+.. +|+.++.++.
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~--~fd~i~~s~~ 155 (203)
T TIGR02252 80 GVP-DPESFEKIFEELYSYFATPEPWQVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLLE--YFDFVVTSYE 155 (203)
T ss_pred CCC-CchhHHHHHHHHHHHhcCCCcceeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHH--hcceEEeecc
Confidence 642 344555566665555443344578999999999999999999999998765 467889999988 9999999999
Q ss_pred cCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEE
Q 039449 168 EGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALL 216 (253)
Q Consensus 168 ~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~ 216 (253)
.+..||+|+.|..++++++ ++++++++|||++.+|+.+|+++|+++||
T Consensus 156 ~~~~KP~~~~~~~~~~~~~-~~~~~~~~IgD~~~~Di~~A~~aG~~~i~ 203 (203)
T TIGR02252 156 VGAEKPDPKIFQEALERAG-ISPEEALHIGDSLRNDYQGARAAGWRALL 203 (203)
T ss_pred cCCCCCCHHHHHHHHHHcC-CChhHEEEECCCchHHHHHHHHcCCeeeC
Confidence 9999999999999999999 99999999999974699999999999985
No 6
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=100.00 E-value=2.6e-32 Score=205.94 Aligned_cols=216 Identities=15% Similarity=0.214 Sum_probs=158.3
Q ss_pred CccccCceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHH
Q 039449 1 MALLSRLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCV 80 (253)
Q Consensus 1 m~~~~~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (253)
|.+..++++|+||+||||+|+.+.+..++..+++++|.+......+... .|. ..... +
T Consensus 1 ~~~~~~~k~iiFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~~~~~~~~~--------------~g~----~~~~~----~ 58 (222)
T PRK10826 1 MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDISRREELPDT--------------LGL----RIDQV----V 58 (222)
T ss_pred CCCcccCcEEEEcCCCCCCcCHHHHHHHHHHHHHHCCCCCCHHHHHHHh--------------hCC----CHHHH----H
Confidence 4334469999999999999999999999999999999864332222211 111 11111 1
Q ss_pred HHHHHHcCC-CCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcce
Q 039449 81 RDSFVRAGY-DYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEW 159 (253)
Q Consensus 81 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f 159 (253)
....+..+. ....+.....+...+..... ....++||+.++|+.|+++|++++|+||+....++..++.+|+.. +|
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~--~f 135 (222)
T PRK10826 59 DLWYARQPWNGPSRQEVVQRIIARVISLIE-ETRPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD--YF 135 (222)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHHh-cCCCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh--cc
Confidence 111222221 11222222222222222211 235889999999999999999999999999999999999999999 99
Q ss_pred eEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCH
Q 039449 160 DFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDL 239 (253)
Q Consensus 160 ~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l 239 (253)
+.++.++..+..||+|+.+..+++++| +++++|++|||+. +|+.+|+++|+++|++++...... .....+++++.|+
T Consensus 136 ~~~~~~~~~~~~Kp~~~~~~~~~~~~~-~~~~~~~~igDs~-~Di~aA~~aG~~~i~v~~~~~~~~-~~~~~~~~~~~~~ 212 (222)
T PRK10826 136 DALASAEKLPYSKPHPEVYLNCAAKLG-VDPLTCVALEDSF-NGMIAAKAARMRSIVVPAPEQQND-PRWALADVKLESL 212 (222)
T ss_pred cEEEEcccCCCCCCCHHHHHHHHHHcC-CCHHHeEEEcCCh-hhHHHHHHcCCEEEEecCCccCch-hhhhhhheeccCH
Confidence 999999888889999999999999999 9999999999999 899999999999999985433322 2233466899999
Q ss_pred HHHHH
Q 039449 240 VAVKE 244 (253)
Q Consensus 240 ~el~~ 244 (253)
.+|..
T Consensus 213 ~dl~~ 217 (222)
T PRK10826 213 TELTA 217 (222)
T ss_pred HHHhh
Confidence 99854
No 7
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=100.00 E-value=6.6e-32 Score=204.72 Aligned_cols=222 Identities=24% Similarity=0.327 Sum_probs=165.4
Q ss_pred CccccCceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHH
Q 039449 1 MALLSRLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCV 80 (253)
Q Consensus 1 m~~~~~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (253)
|.. +++++|+||+||||+++.+.+..++..+++++|.+......+... .|.. .. .++
T Consensus 1 ~~~-~~~~~iiFD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~g~~----~~----~~~ 57 (226)
T PRK13222 1 MKF-MDIRAVAFDLDGTLVDSAPDLAAAVNAALAALGLPPAGEERVRTW--------------VGNG----AD----VLV 57 (226)
T ss_pred CCC-CcCcEEEEcCCcccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHH--------------hCcc----HH----HHH
Confidence 443 458999999999999998888889999999999876554443321 1111 11 122
Q ss_pred HHHHHHcCCCCChHHHHH---HHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCc
Q 039449 81 RDSFVRAGYDYDEDTFEK---IFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGT 157 (253)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~ 157 (253)
...+...+...+.+.... .+...+..... ....++||+.++++.|++.|++++++||+....++.+++.+|+..
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-- 134 (226)
T PRK13222 58 ERALTWAGREPDEELLEKLRELFDRHYAENVA-GGSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIAD-- 134 (226)
T ss_pred HHHHhhccCCccHHHHHHHHHHHHHHHHHhcc-ccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCcc--
Confidence 333333333333333333 33333333221 235789999999999999999999999999999999999999988
Q ss_pred ceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccC
Q 039449 158 EWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLP 237 (253)
Q Consensus 158 ~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~ 237 (253)
+|+.++.++..+..||+|+++..++++++ ++++++++|||+. +|+.+|+++|+++|++.+...+..+.....++++++
T Consensus 135 ~f~~~~~~~~~~~~kp~~~~~~~~~~~~~-~~~~~~i~igD~~-~Di~~a~~~g~~~i~v~~g~~~~~~~~~~~~~~~i~ 212 (226)
T PRK13222 135 YFSVVIGGDSLPNKKPDPAPLLLACEKLG-LDPEEMLFVGDSR-NDIQAARAAGCPSVGVTYGYNYGEPIALSEPDVVID 212 (226)
T ss_pred CccEEEcCCCCCCCCcChHHHHHHHHHcC-CChhheEEECCCH-HHHHHHHHCCCcEEEECcCCCCccchhhcCCCEEEC
Confidence 88888888888888999999999999999 9999999999999 899999999999999994222222222234568999
Q ss_pred CHHHHHHHHhhhh
Q 039449 238 DLVAVKEFLTSEI 250 (253)
Q Consensus 238 ~l~el~~~l~~~~ 250 (253)
|+.+|..++.+.+
T Consensus 213 ~~~~l~~~l~~~~ 225 (226)
T PRK13222 213 HFAELLPLLGLAL 225 (226)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999987754
No 8
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=100.00 E-value=6.7e-32 Score=207.62 Aligned_cols=222 Identities=13% Similarity=0.192 Sum_probs=156.7
Q ss_pred CceEEEEecCCceeccCCC-HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHH
Q 039449 6 RLRCITVDVTGTLLAYKGE-LGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSF 84 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (253)
++++|+||+||||+|+... +..++..+++++|.+. +.+.+...+.......... .+ +. ........
T Consensus 1 ~~k~viFD~DGTLiDs~~~~~~~a~~~~~~~~g~~~-~~~~~~~~~G~~~~~~~~~---~~-----~~----~~~~~~~~ 67 (253)
T TIGR01422 1 KIEAVIFDWAGTTVDFGSFAPTQAFVEAFAEFGVQI-TLEEARGPMGLGKWDHIRA---LL-----KM----PAVAERWR 67 (253)
T ss_pred CceEEEEeCCCCeecCCCccHHHHHHHHHHHcCCCc-cHHHHHHhcCccHHHHHHH---Hh-----cC----HHHHHHHH
Confidence 3789999999999998653 5778999999999753 3333322111110000000 00 00 01122233
Q ss_pred HHcCCCCChHHHHHHH---HHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcce-e
Q 039449 85 VRAGYDYDEDTFEKIF---RRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEW-D 160 (253)
Q Consensus 85 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f-~ 160 (253)
+.++...+.+.+...+ ...+.... .....++||+.++|+.|+++|++++|+||+....++.+++.+|+.. +| +
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~--~f~d 144 (253)
T TIGR01422 68 AKFGRLPTEADIEAIYEAFEPLQLAKL-AEYSSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG--YRPD 144 (253)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHHHHH-HhcCccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC--CCCc
Confidence 4445443444433333 32222222 1235889999999999999999999999999999999999999988 75 7
Q ss_pred EeeeccccCccCCCHHHHHHHHHHhCCCC-CCceEEEcCCcccchhhhhhcCCeEEEEcCCCCC----C-----------
Q 039449 161 FGVFSGLEGVEKPDPRIYEIALERAGNIA-PEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTP----D----------- 224 (253)
Q Consensus 161 ~~~~~~~~~~~kp~~~~~~~~~~~~~~~~-~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~----~----------- 224 (253)
.+++++..+..||+|+.|..++++++ +. +++|++|||++ +|+.+|+++|+.+|++.+ +.. +
T Consensus 145 ~ii~~~~~~~~KP~p~~~~~a~~~l~-~~~~~~~l~IGDs~-~Di~aA~~aGi~~i~v~~-g~~~~~~~~~~~~~~~~~~ 221 (253)
T TIGR01422 145 YNVTTDDVPAGRPAPWMALKNAIELG-VYDVAACVKVGDTV-PDIEEGRNAGMWTVGLIL-SSNELGLSEEEYRALDPAE 221 (253)
T ss_pred eEEccccCCCCCCCHHHHHHHHHHcC-CCCchheEEECCcH-HHHHHHHHCCCeEEEEec-CCcccCCCHHHHHhCCHHH
Confidence 88888888889999999999999999 95 99999999999 999999999999999983 432 1
Q ss_pred --------hhhhhhc-CCcccCCHHHHHHHH
Q 039449 225 --------AKEWRKS-GAIVLPDLVAVKEFL 246 (253)
Q Consensus 225 --------~~~~~~~-~~~~i~~l~el~~~l 246 (253)
...+... ++++++++.|+.+++
T Consensus 222 ~~~~~~~~~~~l~~~~~~~v~~~~~el~~~~ 252 (253)
T TIGR01422 222 LEARRAEATARLKAAGAHYVIDTLAELPAVI 252 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEehhcHHHHHHhh
Confidence 2344443 458999999998765
No 9
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=100.00 E-value=5.5e-32 Score=203.31 Aligned_cols=209 Identities=24% Similarity=0.338 Sum_probs=156.5
Q ss_pred EEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHHcCC
Q 039449 10 ITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVRAGY 89 (253)
Q Consensus 10 i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (253)
|+||+||||+|+...+..++..+++++|.+....+.+... .|.. .. ..+...+...+.
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~g~~----~~----~~~~~~~~~~~~ 58 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMALAALGLPPATLARVIGF--------------IGNG----VP----VLMERVLAWAGQ 58 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHH--------------hccc----HH----HHHHHHhhcccc
Confidence 6899999999999888889999999999865444433221 1111 11 112333333343
Q ss_pred CCChHHH---HHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecc
Q 039449 90 DYDEDTF---EKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSG 166 (253)
Q Consensus 90 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~ 166 (253)
..+.+.. ...+...+..... ....++||+.++|+.|+++|++++|+||+....++..++.+|+.. +|+.++.++
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~--~f~~~~~~~ 135 (213)
T TIGR01449 59 EPDAQRVAELRKLFDRHYEEVAG-ELTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK--YFSVLIGGD 135 (213)
T ss_pred ccChHHHHHHHHHHHHHHHHhcc-ccCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh--hCcEEEecC
Confidence 3333222 2333333333221 235789999999999999999999999999999999999999988 899988888
Q ss_pred ccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhh-hcCCcccCCHHHHHHH
Q 039449 167 LEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWR-KSGAIVLPDLVAVKEF 245 (253)
Q Consensus 167 ~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~-~~~~~~i~~l~el~~~ 245 (253)
..+..||+|+.+..++++++ ++++++++|||+. +|+.+|+++|++++++.+ +......+. ..++++++++.+|..+
T Consensus 136 ~~~~~Kp~p~~~~~~~~~~~-~~~~~~~~igDs~-~d~~aa~~aG~~~i~v~~-g~~~~~~l~~~~a~~~i~~~~~l~~~ 212 (213)
T TIGR01449 136 SLAQRKPHPDPLLLAAERLG-VAPQQMVYVGDSR-VDIQAARAAGCPSVLLTY-GYRYGEAIDLLPPDVLYDSLNELPPL 212 (213)
T ss_pred CCCCCCCChHHHHHHHHHcC-CChhHeEEeCCCH-HHHHHHHHCCCeEEEEcc-CCCCCcchhhcCCCeEeCCHHHHHhh
Confidence 88888999999999999999 9999999999999 999999999999999983 333222332 3456899999998765
Q ss_pred H
Q 039449 246 L 246 (253)
Q Consensus 246 l 246 (253)
|
T Consensus 213 ~ 213 (213)
T TIGR01449 213 L 213 (213)
T ss_pred C
Confidence 3
No 10
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=100.00 E-value=9.7e-32 Score=208.04 Aligned_cols=222 Identities=12% Similarity=0.134 Sum_probs=158.0
Q ss_pred ccCceEEEEecCCceeccCCC-HHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHH---
Q 039449 4 LSRLRCITVDVTGTLLAYKGE-LGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTC--- 79 (253)
Q Consensus 4 ~~~~k~i~fD~DGTL~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 79 (253)
|+++|+|+||+||||+|+... +..++..+++++|.+. ..+..... +|.. ....++.+
T Consensus 1 ~~~~k~vIFDlDGTLiDs~~~~~~~a~~~~~~~~g~~~-~~~~~~~~--------------~G~~----~~~~~~~~~~~ 61 (267)
T PRK13478 1 MMKIQAVIFDWAGTTVDFGSFAPTQAFVEAFAQFGVEI-TLEEARGP--------------MGLG----KWDHIRALLKM 61 (267)
T ss_pred CCceEEEEEcCCCCeecCCCccHHHHHHHHHHHcCCCC-CHHHHHHh--------------cCCC----HHHHHHHHHhc
Confidence 456899999999999998654 3678999999999753 33322211 1211 11111111
Q ss_pred ---HHHHHHHcCCCCChHHHHHHHH---HHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCC
Q 039449 80 ---VRDSFVRAGYDYDEDTFEKIFR---RIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGV 153 (253)
Q Consensus 80 ---~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl 153 (253)
.......++...+.+.....+. ..+.... .....++||+.++|+.|+++|++++|+||.....+...++.+++
T Consensus 62 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l 140 (267)
T PRK13478 62 PRVAARWQAVFGRLPTEADVDALYAAFEPLQIAKL-ADYATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAA 140 (267)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHH-hhcCCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhh
Confidence 1112233444333343333332 2222222 12347899999999999999999999999999999999999988
Q ss_pred CCCcc-eeEeeeccccCccCCCHHHHHHHHHHhCCCC-CCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCC-------
Q 039449 154 NQGTE-WDFGVFSGLEGVEKPDPRIYEIALERAGNIA-PEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPD------- 224 (253)
Q Consensus 154 ~~~~~-f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~-~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~------- 224 (253)
.. + |+.++++++.+..||+|+.|..++++++ +. +++|++|||++ +|+.+|+++|+++|++.+ +...
T Consensus 141 ~~--~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~-~~~~~e~l~IGDs~-~Di~aA~~aG~~~i~v~~-g~~~~~~~~~~ 215 (267)
T PRK13478 141 QG--YRPDHVVTTDDVPAGRPYPWMALKNAIELG-VYDVAACVKVDDTV-PGIEEGLNAGMWTVGVIL-SGNELGLSEEE 215 (267)
T ss_pred cC--CCceEEEcCCcCCCCCCChHHHHHHHHHcC-CCCCcceEEEcCcH-HHHHHHHHCCCEEEEEcc-CcccccCCHHH
Confidence 77 5 4777788888888999999999999999 96 69999999999 999999999999999984 3321
Q ss_pred ----------------hhhhhhc-CCcccCCHHHHHHHHhhhh
Q 039449 225 ----------------AKEWRKS-GAIVLPDLVAVKEFLTSEI 250 (253)
Q Consensus 225 ----------------~~~~~~~-~~~~i~~l~el~~~l~~~~ 250 (253)
.+.+... .+++++|+.+|.+++....
T Consensus 216 ~~~~~~~~~~~~~~~~~~~l~~~~a~~vi~~~~~l~~~l~~~~ 258 (267)
T PRK13478 216 YQALSAAELAARRERARARLRAAGAHYVIDTIADLPAVIADIE 258 (267)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHcCCCeehhhHHHHHHHHHHHH
Confidence 2344343 4589999999998886543
No 11
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=100.00 E-value=1.1e-31 Score=205.15 Aligned_cols=209 Identities=16% Similarity=0.185 Sum_probs=153.7
Q ss_pred ccCceEEEEecCCceeccCCCHHHHHHHHHHHcCCCC---CCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHH
Q 039449 4 LSRLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPC---PDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCV 80 (253)
Q Consensus 4 ~~~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (253)
+.++++|+||+||||+|+...+..++..+++++|... ...+..... ..|. +..+.+.
T Consensus 19 ~~~~k~viFDlDGTLiDs~~~~~~a~~~~~~~~g~~~g~~~~~~~~~~~-------------~~G~----~~~~~~~--- 78 (248)
T PLN02770 19 LAPLEAVLFDVDGTLCDSDPLHYYAFREMLQEINFNGGVPITEEFFVEN-------------IAGK----HNEDIAL--- 78 (248)
T ss_pred cCccCEEEEcCCCccCcCHHHHHHHHHHHHHHhccccCCCCCHHHHHHH-------------cCCC----CHHHHHH---
Confidence 4568999999999999999999999999999997541 122211110 1222 1122211
Q ss_pred HHHHHHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCccee
Q 039449 81 RDSFVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWD 160 (253)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~ 160 (253)
..+.. ... ...++...+...+..... ....++||+.++|++|+++|++++|+||+....++..++.+|+.. +|+
T Consensus 79 -~~~~~-~~~-~~~~~~~~~~~~y~~~~~-~~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~--~Fd 152 (248)
T PLN02770 79 -GLFPD-DLE-RGLKFTDDKEALFRKLAS-EQLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD--FFQ 152 (248)
T ss_pred -HHcCc-chh-hHHHHHHHHHHHHHHHHH-hcCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh--hCc
Confidence 11110 000 011112222333333221 235789999999999999999999999999999999999999998 999
Q ss_pred EeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhh-hcCCcccCCH
Q 039449 161 FGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWR-KSGAIVLPDL 239 (253)
Q Consensus 161 ~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~-~~~~~~i~~l 239 (253)
.++++++.+..||+|+.|..++++++ +++++|++|||+. +|+++|+++|+++|++.+ +.+ ...+. ..+++++.++
T Consensus 153 ~iv~~~~~~~~KP~p~~~~~a~~~~~-~~~~~~l~vgDs~-~Di~aA~~aGi~~i~v~~-g~~-~~~l~~~~a~~vi~~~ 228 (248)
T PLN02770 153 AVIIGSECEHAKPHPDPYLKALEVLK-VSKDHTFVFEDSV-SGIKAGVAAGMPVVGLTT-RNP-ESLLMEAKPTFLIKDY 228 (248)
T ss_pred EEEecCcCCCCCCChHHHHHHHHHhC-CChhHEEEEcCCH-HHHHHHHHCCCEEEEEeC-CCC-HHHHhhcCCCEEeccc
Confidence 99999999999999999999999999 9999999999999 899999999999999984 433 23332 3456899999
Q ss_pred HHH
Q 039449 240 VAV 242 (253)
Q Consensus 240 ~el 242 (253)
.++
T Consensus 229 ~e~ 231 (248)
T PLN02770 229 EDP 231 (248)
T ss_pred hhh
Confidence 983
No 12
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=100.00 E-value=4.9e-32 Score=198.90 Aligned_cols=213 Identities=39% Similarity=0.690 Sum_probs=183.3
Q ss_pred CccccCceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCC-CChHHHHHHH
Q 039449 1 MALLSRLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAK-MPNIVWWKTC 79 (253)
Q Consensus 1 m~~~~~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 79 (253)
|+..+++++|+||++|||+...+.....+..+.+.+|++... ..+.+.+...++++....+..+.... ++..+||..+
T Consensus 1 ~~~~~~iravtfD~~~tLl~~~~~~~~~y~~i~~~~gl~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~g~l~~~~ww~~l 79 (237)
T KOG3085|consen 1 MAELMRIRAVTFDAGGTLLATLPPVMEVYCEIAEAYGLEYDD-SLIETIFRKDFKKMSEKGPFFGLYSGELTLSQWWPKL 79 (237)
T ss_pred CCcccceEEEEEeCCCceeecCCccHHHHHHHHHHhCCCCCH-HHHhHhhhHHHHhhcccCCcccccCCcccHHHHHHHH
Confidence 677789999999999999999999999999999999998655 78888899999988888888888766 8999999999
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcce
Q 039449 80 VRDSFVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEW 159 (253)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f 159 (253)
+...+...+.+...+.........+.... ...+...+++.++++.|++.|..++++||.+.... ..+..+|+.. +|
T Consensus 80 v~~~f~~~~~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~~--~f 155 (237)
T KOG3085|consen 80 VESTFGKAGIDYEEELLENFSFRLFSTFA-PSAWKYLDGMQELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLSA--YF 155 (237)
T ss_pred HHHHhccccchhHHHHHhhhhhheecccc-ccCceeccHHHHHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHHH--hh
Confidence 98888776654333333233334444332 23567788999999999999999999999998766 6888999987 99
Q ss_pred eEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 160 DFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 160 ~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
+.++.|.+.+..||+|+.|+.++++++ ++|++|+||||+..||+++|+++|+.++++.+
T Consensus 156 D~vv~S~e~g~~KPDp~If~~al~~l~-v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~ 214 (237)
T KOG3085|consen 156 DFVVESCEVGLEKPDPRIFQLALERLG-VKPEECVHIGDLLENDYEGARNLGWHAILVDN 214 (237)
T ss_pred hhhhhhhhhccCCCChHHHHHHHHHhC-CChHHeEEecCccccccHhHHHcCCEEEEEcc
Confidence 999999999999999999999999999 99999999999999999999999999999984
No 13
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=100.00 E-value=7.4e-32 Score=206.15 Aligned_cols=212 Identities=17% Similarity=0.212 Sum_probs=157.9
Q ss_pred CceEEEEecCCceeccCC-CHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHH
Q 039449 6 RLRCITVDVTGTLLAYKG-ELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSF 84 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (253)
.+|+|+||+||||+|+.. .+..++..+++++|+.....+.... ..|.. .... +...+
T Consensus 23 ~~k~vIFDlDGTLvDS~~~~~~~a~~~~~~~~G~~~~~~e~~~~--------------~~G~~----~~~~----~~~l~ 80 (260)
T PLN03243 23 GWLGVVLEWEGVIVEDDSELERKAWRALAEEEGKRPPPAFLLKR--------------AEGMK----NEQA----ISEVL 80 (260)
T ss_pred CceEEEEeCCCceeCCchHHHHHHHHHHHHHcCCCCCHHHHHHH--------------hcCCC----HHHH----HHHHh
Confidence 489999999999999964 5667999999999987543222111 12322 1222 22222
Q ss_pred HHcCCCCCh---HHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeE
Q 039449 85 VRAGYDYDE---DTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDF 161 (253)
Q Consensus 85 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~ 161 (253)
.. ..+. +.+...+...+.... .....++||+.++|++|+++|++++|+||+....++..++.+|+.. +|+.
T Consensus 81 ~~---~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~--~Fd~ 154 (260)
T PLN03243 81 CW---SRDFLQMKRLAIRKEDLYEYMQ-GGLYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG--FFSV 154 (260)
T ss_pred cc---CCCHHHHHHHHHHHHHHHHHHH-ccCcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh--hCcE
Confidence 11 1112 222333333332221 2235789999999999999999999999999999999999999998 9999
Q ss_pred eeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHH
Q 039449 162 GVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVA 241 (253)
Q Consensus 162 ~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~e 241 (253)
++++++....||+|+.|..++++++ +++++|++|||+. +|+.+|+++|+.+|++.++. ....+. .+++++.++++
T Consensus 155 ii~~~d~~~~KP~Pe~~~~a~~~l~-~~p~~~l~IgDs~-~Di~aA~~aG~~~i~v~g~~--~~~~l~-~ad~vi~~~~e 229 (260)
T PLN03243 155 VLAAEDVYRGKPDPEMFMYAAERLG-FIPERCIVFGNSN-SSVEAAHDGCMKCVAVAGKH--PVYELS-AGDLVVRRLDD 229 (260)
T ss_pred EEecccCCCCCCCHHHHHHHHHHhC-CChHHeEEEcCCH-HHHHHHHHcCCEEEEEecCC--chhhhc-cCCEEeCCHHH
Confidence 9999998889999999999999999 9999999999999 89999999999999997322 233333 35689999999
Q ss_pred HHHHHhhhh
Q 039449 242 VKEFLTSEI 250 (253)
Q Consensus 242 l~~~l~~~~ 250 (253)
+.......+
T Consensus 230 l~~~~~~~~ 238 (260)
T PLN03243 230 LSVVDLKNL 238 (260)
T ss_pred HHHHHHhhh
Confidence 977665443
No 14
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=100.00 E-value=5.1e-31 Score=199.09 Aligned_cols=215 Identities=28% Similarity=0.348 Sum_probs=149.7
Q ss_pred ceEEEEecCCceeccCCCHHHHHHHH---HHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHH
Q 039449 7 LRCITVDVTGTLLAYKGELGDYYCMA---AKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDS 83 (253)
Q Consensus 7 ~k~i~fD~DGTL~~~~~~~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (253)
+++|+||+||||+++.+.+..++..+ +...|.+. ..++....+...+........ .....+ +...
T Consensus 2 ~~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~-------~~~~~~----~~~~ 69 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGLAEKARRNAIEVLIEAGLNV-DFEEAYEELLKLIKEYGSNYP-------THFDYL----IRRL 69 (221)
T ss_pred ceEEEEeCCCCCcCCCCccCHHHHHHHHHHHHCCCcC-CHHHHHHHHHHHHHHhccccC-------cchHHH----HHHH
Confidence 78999999999999998877776654 45666653 444444333332222111010 011111 1111
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEee
Q 039449 84 FVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGV 163 (253)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~ 163 (253)
. .....+........+..... ....++||+.++|++|+++|++++++||+....+...++.+|+.. +|+.++
T Consensus 70 ~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~--~f~~i~ 141 (221)
T TIGR02253 70 W----EEYNPKLVAAFVYAYHKLKF--AYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVRD--FFDAVI 141 (221)
T ss_pred h----hhcCHHHHHHHHHHHHHHHH--HhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChHH--hccEEE
Confidence 1 11122222222222222111 124789999999999999999999999999988999999999998 999999
Q ss_pred eccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChh-hhhhcCCcccCCHHHH
Q 039449 164 FSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAK-EWRKSGAIVLPDLVAV 242 (253)
Q Consensus 164 ~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~-~~~~~~~~~i~~l~el 242 (253)
++++.+..||+|+.|..++++++ ++++++++|||++.+|+.+|+++|+.+|++.+....... .....+++++.++.||
T Consensus 142 ~~~~~~~~KP~~~~~~~~~~~~~-~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~el 220 (221)
T TIGR02253 142 TSEEEGVEKPHPKIFYAALKRLG-VKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGKSSKMEDDVYPYPDYEISSLREL 220 (221)
T ss_pred EeccCCCCCCCHHHHHHHHHHcC-CChhhEEEECCChHHHHHHHHHCCCEEEEECCCCCcccccccccCCCeeeCcHHhh
Confidence 99999999999999999999999 999999999999756999999999999999843322211 1122356789999886
No 15
>PRK09449 dUMP phosphatase; Provisional
Probab=100.00 E-value=2.1e-30 Score=196.10 Aligned_cols=219 Identities=19% Similarity=0.240 Sum_probs=156.3
Q ss_pred CceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHH--HHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHH
Q 039449 6 RLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHE--GFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDS 83 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (253)
++|+|+||+||||+|.. ...++..+++++|.... .+.... .+....... + ..+.++..+.....+...
T Consensus 2 ~~k~iiFDlDGTLid~~--~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~ 71 (224)
T PRK09449 2 KYDWILFDADETLFHFD--AFAGLQRMFSRYGVDFT-AEDFQDYQAVNKPLWVD---Y----QNGAITALQLQHTRFESW 71 (224)
T ss_pred CccEEEEcCCCchhcch--hhHHHHHHHHHhCCCCc-HHHHHHHHHHHHHHHHH---H----HcCCCCHHHHHHHHHHHH
Confidence 58999999999999843 35678888888887642 222211 111111100 0 011223333333333444
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEee
Q 039449 84 FVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGV 163 (253)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~ 163 (253)
.+.++. +.+.+...+...+.. ...++||+.++|++|+ +|++++++||+....++..++.+|+.. +|+.++
T Consensus 72 ~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~~--~fd~v~ 141 (224)
T PRK09449 72 AEKLNV--TPGELNSAFLNAMAE-----ICTPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLRD--YFDLLV 141 (224)
T ss_pred HHHcCC--CHHHHHHHHHHHHhh-----cCccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChHH--HcCEEE
Confidence 555554 334444444333322 1478999999999999 579999999999999999999999998 999999
Q ss_pred eccccCccCCCHHHHHHHHHHhCCCCC-CceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHH
Q 039449 164 FSGLEGVEKPDPRIYEIALERAGNIAP-EEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAV 242 (253)
Q Consensus 164 ~~~~~~~~kp~~~~~~~~~~~~~~~~~-~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el 242 (253)
++++.+..||+|+.|..++++++ +.+ ++|++|||+..+|+.+|+++|+++|++++.+...... ..++++++++.||
T Consensus 142 ~~~~~~~~KP~p~~~~~~~~~~~-~~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~~~~~~~~~~--~~~~~~i~~~~el 218 (224)
T PRK09449 142 ISEQVGVAKPDVAIFDYALEQMG-NPDRSRVLMVGDNLHSDILGGINAGIDTCWLNAHGREQPEG--IAPTYQVSSLSEL 218 (224)
T ss_pred EECccCCCCCCHHHHHHHHHHcC-CCCcccEEEEcCCcHHHHHHHHHCCCcEEEECCCCCCCCCC--CCCeEEECCHHHH
Confidence 99999999999999999999999 854 7999999998359999999999999998533322221 2356899999999
Q ss_pred HHHHh
Q 039449 243 KEFLT 247 (253)
Q Consensus 243 ~~~l~ 247 (253)
..+++
T Consensus 219 ~~~l~ 223 (224)
T PRK09449 219 EQLLC 223 (224)
T ss_pred HHHHh
Confidence 98775
No 16
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=100.00 E-value=3.4e-31 Score=197.56 Aligned_cols=202 Identities=21% Similarity=0.285 Sum_probs=153.8
Q ss_pred EEEecCCceeccCCCHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHHcC
Q 039449 10 ITVDVTGTLLAYKGELGDYYCMAAKSV-GLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVRAG 88 (253)
Q Consensus 10 i~fD~DGTL~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (253)
|+||+||||+|+...+.+++..+++++ |.+....+.+... .|.. ....++..+
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~g~~------------~~~~~~~~~ 54 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIAYREVVGDGPAPFEEYRRH--------------LGRY------------FPDIMRIMG 54 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH--------------hCcc------------HHHHHHHcC
Confidence 689999999999999999999999884 7654443333221 1111 222233333
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecccc
Q 039449 89 YDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLE 168 (253)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~ 168 (253)
.+. ..........+. . .....++||+.++|++|+++|++++++||+....++..++.+|+.. +|+.++.+++.
T Consensus 55 ~~~--~~~~~~~~~~~~-~--~~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~--~f~~i~~~~~~ 127 (205)
T TIGR01454 55 LPL--EMEEPFVRESYR-L--AGEVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP--LFDHVIGSDEV 127 (205)
T ss_pred CCH--HHHHHHHHHHHH-h--hcccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh--heeeEEecCcC
Confidence 321 111111222222 1 1235889999999999999999999999999999999999999998 99998888888
Q ss_pred CccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhh-hcCCcccCCHHHHHHHHh
Q 039449 169 GVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWR-KSGAIVLPDLVAVKEFLT 247 (253)
Q Consensus 169 ~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~-~~~~~~i~~l~el~~~l~ 247 (253)
+..||+++.+..++++++ ++++++++|||+. +|+.+|+++|+++|++. ++....+.+. ..+++++.++.+|..+++
T Consensus 128 ~~~KP~~~~~~~~~~~~~-~~~~~~l~igD~~-~Di~aA~~~Gi~~i~~~-~g~~~~~~l~~~~~~~~~~~~~~l~~~~~ 204 (205)
T TIGR01454 128 PRPKPAPDIVREALRLLD-VPPEDAVMVGDAV-TDLASARAAGTATVAAL-WGEGDAGELLAARPDFLLRKPQSLLALCR 204 (205)
T ss_pred CCCCCChHHHHHHHHHcC-CChhheEEEcCCH-HHHHHHHHcCCeEEEEE-ecCCChhhhhhcCCCeeeCCHHHHHHHhh
Confidence 888999999999999999 9999999999999 89999999999999998 4544444443 345589999999988765
No 17
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=99.98 E-value=9.7e-31 Score=198.10 Aligned_cols=223 Identities=19% Similarity=0.256 Sum_probs=163.3
Q ss_pred ceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHH
Q 039449 7 LRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVR 86 (253)
Q Consensus 7 ~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (253)
+|+|+||+||||+|+......++..++++.|.+... .. ...+..........+. .+..+...+....+...+..
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~~~~~g~~~~~-~~-~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 74 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLLFEDQGIPLTE-DM-FAQYKEINQGLWRAYE----EGKITKDEVVNTRFSALLKE 74 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHHHHHhCCCccH-HH-HHHHHHHhHHHHHHHH----cCCCCHHHHHHHHHHHHHHH
Confidence 589999999999999998888899999999976431 11 1111110011111110 11233444444445556666
Q ss_pred cCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecc
Q 039449 87 AGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSG 166 (253)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~ 166 (253)
.+.+...+.+...+...+.. ...++||+.++|++|++. ++++++||+....+...++.+|+.. +|+.++.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~--~fd~i~~~~ 146 (224)
T TIGR02254 75 YNTEADEALLNQKYLRFLEE-----GHQLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFP--FFDDIFVSE 146 (224)
T ss_pred hCCCCcHHHHHHHHHHHHhc-----cCeeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHh--hcCEEEEcC
Confidence 66544333343334333321 247899999999999999 9999999999999999999999998 999999999
Q ss_pred ccCccCCCHHHHHHHHHHh-CCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHH
Q 039449 167 LEGVEKPDPRIYEIALERA-GNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEF 245 (253)
Q Consensus 167 ~~~~~kp~~~~~~~~~~~~-~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~ 245 (253)
..+..||+|++|..+++++ + ++++++++|||+..+|+.+|+++|+++|++++.+..... ...+.+++.++.||.++
T Consensus 147 ~~~~~KP~~~~~~~~~~~~~~-~~~~~~v~igD~~~~di~~A~~~G~~~i~~~~~~~~~~~--~~~~~~~~~~~~el~~~ 223 (224)
T TIGR02254 147 DAGIQKPDKEIFNYALERMPK-FSKEEVLMIGDSLTADIKGGQNAGLDTCWMNPDMHPNPD--DIIPTYEIRSLEELYEI 223 (224)
T ss_pred ccCCCCCCHHHHHHHHHHhcC-CCchheEEECCCcHHHHHHHHHCCCcEEEECCCCCCCCC--CCCCceEECCHHHHHhh
Confidence 9999999999999999999 9 999999999999735999999999999999853333221 23345899999999876
Q ss_pred H
Q 039449 246 L 246 (253)
Q Consensus 246 l 246 (253)
|
T Consensus 224 ~ 224 (224)
T TIGR02254 224 L 224 (224)
T ss_pred C
Confidence 4
No 18
>PRK11587 putative phosphatase; Provisional
Probab=99.98 E-value=4.1e-31 Score=198.74 Aligned_cols=201 Identities=18% Similarity=0.232 Sum_probs=146.1
Q ss_pred CceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHH
Q 039449 6 RLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFV 85 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (253)
++|+|+||+||||+|+...+..++..+++++|.+. ...... ..|.. .... ++...
T Consensus 2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~---~~~~~~-------------~~g~~----~~~~----~~~~~- 56 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPAVERAWSNWADRHGIAP---DEVLNF-------------IHGKQ----AITS----LRHFM- 56 (218)
T ss_pred CCCEEEEcCCCCcCcCHHHHHHHHHHHHHHcCCCH---HHHHHH-------------HcCCC----HHHH----HHHHh-
Confidence 58999999999999999999999999999999753 111110 01221 1111 11111
Q ss_pred HcCCCCChHHHHHHHHHH--HHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEee
Q 039449 86 RAGYDYDEDTFEKIFRRI--YASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGV 163 (253)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~ 163 (253)
...+.+.+...+... +.... .....++||+.++|+.|+++|++++++||+........++..++. +|+.++
T Consensus 57 ---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~---~~~~i~ 129 (218)
T PRK11587 57 ---AGASEAEIQAEFTRLEQIEATD-TEGITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP---APEVFV 129 (218)
T ss_pred ---ccCCcHHHHHHHHHHHHHHHhh-hcCceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC---CccEEE
Confidence 111223333333321 11111 234588999999999999999999999999888777788888884 466667
Q ss_pred eccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHH
Q 039449 164 FSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVK 243 (253)
Q Consensus 164 ~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~ 243 (253)
.++.....||+|+.+..+++++| ++|++|++|||+. +|+.+|+++|+++|++.+ +... .. ...++++++++.||.
T Consensus 130 ~~~~~~~~KP~p~~~~~~~~~~g-~~p~~~l~igDs~-~di~aA~~aG~~~i~v~~-~~~~-~~-~~~~~~~~~~~~el~ 204 (218)
T PRK11587 130 TAERVKRGKPEPDAYLLGAQLLG-LAPQECVVVEDAP-AGVLSGLAAGCHVIAVNA-PADT-PR-LDEVDLVLHSLEQLT 204 (218)
T ss_pred EHHHhcCCCCCcHHHHHHHHHcC-CCcccEEEEecch-hhhHHHHHCCCEEEEECC-CCch-hh-hccCCEEecchhhee
Confidence 77777788999999999999999 9999999999999 899999999999999984 3222 22 223568999999874
No 19
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=99.98 E-value=1.3e-30 Score=200.56 Aligned_cols=210 Identities=19% Similarity=0.227 Sum_probs=158.4
Q ss_pred CceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHH
Q 039449 6 RLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFV 85 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (253)
.+++|+||+||||+|+.+.+..++..+++++|......+..... .|. + ....++
T Consensus 61 ~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~--------------~g~----~--------~~~i~~ 114 (273)
T PRK13225 61 TLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQL--------------RQW----S--------SRTIVR 114 (273)
T ss_pred hcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHH--------------hCc----c--------HHHHHH
Confidence 58999999999999999999999999999999875544332221 111 1 112223
Q ss_pred HcCCC-CChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeee
Q 039449 86 RAGYD-YDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVF 164 (253)
Q Consensus 86 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~ 164 (253)
..+.+ ...+++...+...+.... ...+++||+.++|++|+++|++++|+||+....++..++.+|+.. +|+.++.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~~--~F~~vi~ 190 (273)
T PRK13225 115 RAGLSPWQQARLLQRVQRQLGDCL--PALQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLRS--LFSVVQA 190 (273)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhhc--ccCCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChh--heEEEEe
Confidence 33322 112233333444443322 235889999999999999999999999999999999999999988 8988665
Q ss_pred ccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhh-hcCCcccCCHHHHH
Q 039449 165 SGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWR-KSGAIVLPDLVAVK 243 (253)
Q Consensus 165 ~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~-~~~~~~i~~l~el~ 243 (253)
+... +++++.+..++++++ +++++|++|||+. +|+.+|+++|+.+|++. ++....+.+. ..++++++++.+|.
T Consensus 191 ~~~~---~~k~~~~~~~l~~~~-~~p~~~l~IGDs~-~Di~aA~~AG~~~I~v~-~g~~~~~~l~~~~ad~~i~~~~eL~ 264 (273)
T PRK13225 191 GTPI---LSKRRALSQLVAREG-WQPAAVMYVGDET-RDVEAARQVGLIAVAVT-WGFNDRQSLVAACPDWLLETPSDLL 264 (273)
T ss_pred cCCC---CCCHHHHHHHHHHhC-cChhHEEEECCCH-HHHHHHHHCCCeEEEEe-cCCCCHHHHHHCCCCEEECCHHHHH
Confidence 5443 356789999999999 9999999999999 89999999999999998 4544444443 34669999999999
Q ss_pred HHHhhhhh
Q 039449 244 EFLTSEIS 251 (253)
Q Consensus 244 ~~l~~~~~ 251 (253)
+++.+++.
T Consensus 265 ~~~~~~~~ 272 (273)
T PRK13225 265 QAVTQLMR 272 (273)
T ss_pred HHHHHHhc
Confidence 99887654
No 20
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=99.97 E-value=1.4e-30 Score=205.56 Aligned_cols=210 Identities=15% Similarity=0.154 Sum_probs=156.7
Q ss_pred CceEEEEecCCceeccCC-CHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHH
Q 039449 6 RLRCITVDVTGTLLAYKG-ELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSF 84 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (253)
..++|+||+||||+|+.. .+..++..+++++|.+....+.... ..|. +..+. +...+
T Consensus 130 ~~~~VIFDlDGTLIDS~~~i~~~a~~~l~~e~G~~~~~~e~~~~--------------~~G~----~~~~~----l~~ll 187 (381)
T PLN02575 130 GWLGAIFEWEGVIIEDNPDLENQAWLTLAQEEGKSPPPAFILRR--------------VEGM----KNEQA----ISEVL 187 (381)
T ss_pred CCCEEEEcCcCcceeCHHHHHHHHHHHHHHHcCCCCCHHHHHHH--------------hcCC----CHHHH----HHHHh
Confidence 579999999999999887 4556888899999987543322221 1232 22222 22222
Q ss_pred HHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeee
Q 039449 85 VRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVF 164 (253)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~ 164 (253)
.........+++...+...+..... ....++||+.++|+.|+++|++++|+||.....++..++.+|+.. +|+.++.
T Consensus 188 ~~~~~~~~~e~l~~~~~~~y~~~~~-~~~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~--yFd~Iv~ 264 (381)
T PLN02575 188 CWSRDPAELRRMATRKEEIYQALQG-GIYRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIRG--FFSVIVA 264 (381)
T ss_pred hccCCHHHHHHHHHHHHHHHHHHhc-cCCCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHH--HceEEEe
Confidence 2111111123333444444443332 235789999999999999999999999999999999999999998 9999999
Q ss_pred ccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHH
Q 039449 165 SGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKE 244 (253)
Q Consensus 165 ~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~ 244 (253)
+++....||+|+.|..++++++ +++++|++|||+. +|+++|+++|+++|++.+ +. ....+ ...+++++++.||..
T Consensus 265 sddv~~~KP~Peifl~A~~~lg-l~Peecl~IGDS~-~DIeAAk~AGm~~IgV~~-~~-~~~~l-~~Ad~iI~s~~EL~~ 339 (381)
T PLN02575 265 AEDVYRGKPDPEMFIYAAQLLN-FIPERCIVFGNSN-QTVEAAHDARMKCVAVAS-KH-PIYEL-GAADLVVRRLDELSI 339 (381)
T ss_pred cCcCCCCCCCHHHHHHHHHHcC-CCcccEEEEcCCH-HHHHHHHHcCCEEEEECC-CC-ChhHh-cCCCEEECCHHHHHH
Confidence 9998889999999999999999 9999999999999 899999999999999984 32 22222 235679999999854
Q ss_pred H
Q 039449 245 F 245 (253)
Q Consensus 245 ~ 245 (253)
.
T Consensus 340 ~ 340 (381)
T PLN02575 340 V 340 (381)
T ss_pred H
Confidence 3
No 21
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=99.97 E-value=5.3e-31 Score=198.86 Aligned_cols=212 Identities=16% Similarity=0.129 Sum_probs=159.1
Q ss_pred cCceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHH
Q 039449 5 SRLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSF 84 (253)
Q Consensus 5 ~~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (253)
+++++|+||+||||+|+...+.+++..+++++|.+.. .+..... ..| ++..+. +...+
T Consensus 2 ~~~~~viFD~DGTL~d~~~~~~~a~~~~~~~~g~~~~-~~~~~~~-------------~~g----~~~~~~----~~~~~ 59 (221)
T PRK10563 2 SQIEAVFFDCDGTLVDSEVICSRAYVTMFAEFGITLS-LEEVFKR-------------FKG----VKLYEI----IDIIS 59 (221)
T ss_pred CCCCEEEECCCCCCCCChHHHHHHHHHHHHHcCCCCC-HHHHHHH-------------hcC----CCHHHH----HHHHH
Confidence 4689999999999999998888999999999997643 2222211 011 222222 44445
Q ss_pred HHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCccee-Eee
Q 039449 85 VRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWD-FGV 163 (253)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~-~~~ 163 (253)
..++.+.+.+++...+...+.... .....++||+.++|+.|+ ++++|+||+....+...++.+|+.. +|+ .++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~gv~~~L~~L~---~~~~ivTn~~~~~~~~~l~~~~l~~--~F~~~v~ 133 (221)
T PRK10563 60 KEHGVTLAKAELEPVYRAEVARLF-DSELEPIAGANALLESIT---VPMCVVSNGPVSKMQHSLGKTGMLH--YFPDKLF 133 (221)
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHH-HccCCcCCCHHHHHHHcC---CCEEEEeCCcHHHHHHHHHhcChHH--hCcceEe
Confidence 666666556666666655443322 123578999999999983 8999999999988999999999998 886 455
Q ss_pred eccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHH
Q 039449 164 FSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVK 243 (253)
Q Consensus 164 ~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~ 243 (253)
++.+.+..||+|+.|..++++++ +++++|++|||++ +|+++|+++|+++|++...+.. .........+++++.||.
T Consensus 134 ~~~~~~~~KP~p~~~~~a~~~~~-~~p~~~l~igDs~-~di~aA~~aG~~~i~~~~~~~~--~~~~~~~~~~~~~~~~l~ 209 (221)
T PRK10563 134 SGYDIQRWKPDPALMFHAAEAMN-VNVENCILVDDSS-AGAQSGIAAGMEVFYFCADPHN--KPIDHPLVTTFTDLAQLP 209 (221)
T ss_pred eHHhcCCCCCChHHHHHHHHHcC-CCHHHeEEEeCcH-hhHHHHHHCCCEEEEECCCCCC--cchhhhhhHHHHHHHHHH
Confidence 66678889999999999999999 9999999999999 8999999999999998732221 112222335789999988
Q ss_pred HHHhh
Q 039449 244 EFLTS 248 (253)
Q Consensus 244 ~~l~~ 248 (253)
..+.+
T Consensus 210 ~~~~~ 214 (221)
T PRK10563 210 ELWKA 214 (221)
T ss_pred HHHHH
Confidence 87764
No 22
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=99.97 E-value=1.5e-30 Score=201.02 Aligned_cols=219 Identities=21% Similarity=0.313 Sum_probs=160.8
Q ss_pred CceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHH
Q 039449 6 RLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFV 85 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (253)
.+|+|+||+||||+|+...+..++..+++++|.+....+.+... .|.+ ....+...+...+.
T Consensus 12 ~~k~viFDlDGTL~Ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~--------------~g~~----~~~~~~~~l~~~~~ 73 (272)
T PRK13223 12 LPRLVMFDLDGTLVDSVPDLAAAVDRMLLELGRPPAGLEAVRHW--------------VGNG----APVLVRRALAGSID 73 (272)
T ss_pred cCCEEEEcCCCccccCHHHHHHHHHHHHHHcCCCCCCHHHHHHH--------------hChh----HHHHHHHHhccccc
Confidence 47999999999999999999999999999999875443333221 1111 11111111111111
Q ss_pred HcCCC-CChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeee
Q 039449 86 RAGYD-YDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVF 164 (253)
Q Consensus 86 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~ 164 (253)
..+++ ...+++...+.+.+.... ....++||+.++|+.|+++|++++++||+....++..++.+|+.. +|+.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~--~f~~i~~ 149 (272)
T PRK13223 74 HDGVDDELAEQALALFMEAYADSH--ELTVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIGR--YFRWIIG 149 (272)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcC--cCCccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHh--hCeEEEe
Confidence 11221 012233344444433321 224789999999999999999999999999988999999999988 8998888
Q ss_pred ccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhh-hcCCcccCCHHHHH
Q 039449 165 SGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWR-KSGAIVLPDLVAVK 243 (253)
Q Consensus 165 ~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~-~~~~~~i~~l~el~ 243 (253)
++..+..||+|+++..++++++ +++++|++|||+. +|+.+|+++|++++++.+ +......+. ..+++++.++.+|.
T Consensus 150 ~d~~~~~Kp~p~~~~~~~~~~g-~~~~~~l~IGD~~-~Di~aA~~aGi~~i~v~~-G~~~~~~l~~~~~~~vi~~l~el~ 226 (272)
T PRK13223 150 GDTLPQKKPDPAALLFVMKMAG-VPPSQSLFVGDSR-SDVLAAKAAGVQCVALSY-GYNHGRPIAEESPALVIDDLRALL 226 (272)
T ss_pred cCCCCCCCCCcHHHHHHHHHhC-CChhHEEEECCCH-HHHHHHHHCCCeEEEEec-CCCCchhhhhcCCCEEECCHHHHH
Confidence 8888888999999999999999 9999999999999 999999999999999983 433333332 34668999999999
Q ss_pred HHHhhh
Q 039449 244 EFLTSE 249 (253)
Q Consensus 244 ~~l~~~ 249 (253)
.++...
T Consensus 227 ~~~~~~ 232 (272)
T PRK13223 227 PGCADP 232 (272)
T ss_pred HHHhcc
Confidence 876643
No 23
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=99.97 E-value=4.3e-30 Score=190.67 Aligned_cols=196 Identities=21% Similarity=0.295 Sum_probs=140.7
Q ss_pred ceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHH
Q 039449 7 LRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVR 86 (253)
Q Consensus 7 ~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (253)
+|+|+||+||||+|+... ...+...+...+. .....+..............| ...+..+.....+...+++
T Consensus 1 ik~viFD~dgTLiD~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~ 71 (198)
T TIGR01428 1 IKALVFDVYGTLFDVHSV-VERFAELYGGRGE------ALSQLWRQKQLEYSWLRTLMG--PYADFWDLTREALRYLLGR 71 (198)
T ss_pred CcEEEEeCCCcCccHHHH-HHHHHHHhCchHH------HHHHHHHHHHHHHHHHHHccC--CCcCHHHHHHHHHHHHHHH
Confidence 578999999999998753 3333333322211 111111111111100000112 1223344445666777888
Q ss_pred cCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecc
Q 039449 87 AGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSG 166 (253)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~ 166 (253)
.+.....+....... .+. .+.++||+.++|++|+++|++++++||++...+...++.+|+.. +|+.+++++
T Consensus 72 ~g~~~~~~~~~~~~~-~~~------~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~--~fd~i~~s~ 142 (198)
T TIGR01428 72 LGLEDDESAADRLAE-AYL------RLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDD--PFDAVLSAD 142 (198)
T ss_pred cCCCCCHHHHHHHHH-HHh------cCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChh--hhheeEehh
Confidence 887654443322222 221 24788999999999999999999999999999999999999988 999999999
Q ss_pred ccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCC
Q 039449 167 LEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKT 222 (253)
Q Consensus 167 ~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~ 222 (253)
+.+..||+|++|..++++++ ++|+++++|||++ +|+.+|+++|+++|++++.+.
T Consensus 143 ~~~~~KP~~~~~~~~~~~~~-~~p~~~~~vgD~~-~Di~~A~~~G~~~i~v~r~~~ 196 (198)
T TIGR01428 143 AVRAYKPAPQVYQLALEALG-VPPDEVLFVASNP-WDLGGAKKFGFKTAWVNRPGE 196 (198)
T ss_pred hcCCCCCCHHHHHHHHHHhC-CChhhEEEEeCCH-HHHHHHHHCCCcEEEecCCCC
Confidence 99999999999999999999 9999999999999 899999999999999997543
No 24
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=99.97 E-value=1.8e-29 Score=191.97 Aligned_cols=224 Identities=20% Similarity=0.269 Sum_probs=151.4
Q ss_pred ccCceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCC-----HHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHH
Q 039449 4 LSRLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPD-----YKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKT 78 (253)
Q Consensus 4 ~~~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (253)
+.++|+|+||+||||+|+.+.+..++..+++.++...+. ..... .+... +....... -.....+...
T Consensus 7 ~~~~k~iiFDlDGTL~D~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~----~~~~~~~~~~ 78 (238)
T PRK10748 7 LGRISALTFDLDDTLYDNRPVILRTEQEALAFVQNYHPALRSFQNEDLQ-RLRQA---LREAEPEI----YHDVTRWRWR 78 (238)
T ss_pred CCCceeEEEcCcccccCChHHHHHHHHHHHHHHHHhCcchhhCCHHHHH-HHHHH---HHHhCchh----hCcHHHHHHH
Confidence 346799999999999999988888888777655322111 11111 11111 11100000 0012333445
Q ss_pred HHHHHHHHcCCCCChHH-HHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCc
Q 039449 79 CVRDSFVRAGYDYDEDT-FEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGT 157 (253)
Q Consensus 79 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~ 157 (253)
.+...++..+.+.+..+ ........+..+. ....++||+.++|+.|++. ++++++||++.. ++..|+..
T Consensus 79 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~gv~~~L~~L~~~-~~l~i~Tn~~~~-----~~~~gl~~-- 148 (238)
T PRK10748 79 AIEQAMLDAGLSAEEASAGADAAMINFAKWR--SRIDVPQATHDTLKQLAKK-WPLVAITNGNAQ-----PELFGLGD-- 148 (238)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh--hcCCCCccHHHHHHHHHcC-CCEEEEECCCch-----HHHCCcHH--
Confidence 56667777776532211 1111111222221 1257899999999999976 999999998864 47789988
Q ss_pred ceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhh--hhcCCcc
Q 039449 158 EWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEW--RKSGAIV 235 (253)
Q Consensus 158 ~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~--~~~~~~~ 235 (253)
+|+.++.+++.+..||+|+.|..++++++ +++++|+||||++.+|+.+|+++|+++|++++.+....... ...+++.
T Consensus 149 ~fd~i~~~~~~~~~KP~p~~~~~a~~~~~-~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~~~~~~~~~~~~~~~p~~~ 227 (238)
T PRK10748 149 YFEFVLRAGPHGRSKPFSDMYHLAAEKLN-VPIGEILHVGDDLTTDVAGAIRCGMQACWINPENGDLMQTWDSRLLPHIE 227 (238)
T ss_pred hhceeEecccCCcCCCcHHHHHHHHHHcC-CChhHEEEEcCCcHHHHHHHHHCCCeEEEEcCCCccccccccccCCCCEE
Confidence 99999999999999999999999999999 99999999999943899999999999999995432211111 1235579
Q ss_pred cCCHHHHHHHH
Q 039449 236 LPDLVAVKEFL 246 (253)
Q Consensus 236 i~~l~el~~~l 246 (253)
+.+|.||.++|
T Consensus 228 i~~l~el~~~~ 238 (238)
T PRK10748 228 ISRLASLTSLI 238 (238)
T ss_pred ECCHHHHHhhC
Confidence 99999998764
No 25
>PLN02940 riboflavin kinase
Probab=99.97 E-value=1e-29 Score=204.56 Aligned_cols=208 Identities=17% Similarity=0.243 Sum_probs=161.8
Q ss_pred CceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHH
Q 039449 6 RLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFV 85 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (253)
.+++|+||+||||+|+...+..++..+++++|.+.. ..+... ..|. +..+ .+...+.
T Consensus 10 ~ik~VIFDlDGTLvDt~~~~~~a~~~~~~~~G~~~~-~~~~~~--------------~~G~----~~~~----~~~~~~~ 66 (382)
T PLN02940 10 LVSHVILDLDGTLLNTDGIVSDVLKAFLVKYGKQWD-GREAQK--------------IVGK----TPLE----AAATVVE 66 (382)
T ss_pred cCCEEEECCcCcCCcCHHHHHHHHHHHHHHcCCCCC-HHHHHH--------------hcCC----CHHH----HHHHHHH
Confidence 489999999999999999999999999999997643 222211 1222 2222 2444556
Q ss_pred HcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhh-hcCCCCCcceeEeee
Q 039449 86 RAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILP-ALGVNQGTEWDFGVF 164 (253)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~-~~gl~~~~~f~~~~~ 164 (253)
..+.+.+.+++...+...+..... ...++||+.++|++|+++|++++|+||.....+...++ ..|+.. +|+.+++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~--~Fd~ii~ 142 (382)
T PLN02940 67 DYGLPCSTDEFNSEITPLLSEQWC--NIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWKE--SFSVIVG 142 (382)
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHc--cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHh--hCCEEEe
Confidence 666665556655555554444332 35789999999999999999999999999988888887 789988 9999999
Q ss_pred ccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHH
Q 039449 165 SGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKE 244 (253)
Q Consensus 165 ~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~ 244 (253)
+++.+..||+|+.+..++++++ +++++|++|||+. +|+++|+++|+.+|++.+ +...... ...++++++++.++..
T Consensus 143 ~d~v~~~KP~p~~~~~a~~~lg-v~p~~~l~VGDs~-~Di~aA~~aGi~~I~v~~-g~~~~~~-~~~ad~~i~sl~el~~ 218 (382)
T PLN02940 143 GDEVEKGKPSPDIFLEAAKRLN-VEPSNCLVIEDSL-PGVMAGKAAGMEVIAVPS-IPKQTHL-YSSADEVINSLLDLQP 218 (382)
T ss_pred hhhcCCCCCCHHHHHHHHHHcC-CChhHEEEEeCCH-HHHHHHHHcCCEEEEECC-CCcchhh-ccCccEEeCCHhHcCH
Confidence 9999999999999999999999 9999999999999 899999999999999984 3222222 2335578999998753
No 26
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=99.97 E-value=7.6e-29 Score=188.33 Aligned_cols=226 Identities=24% Similarity=0.319 Sum_probs=153.1
Q ss_pred ccCceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHH
Q 039449 4 LSRLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPD--YKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVR 81 (253)
Q Consensus 4 ~~~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (253)
++++++|+||+||||++............+...+..... ........ ..+..... ....+... ... ..+.
T Consensus 1 ~~~~k~i~FD~d~TL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~-----~~~~ 72 (229)
T COG1011 1 MMMIKAILFDLDGTLLDFDSAEFRAVLAEFAEIGVPETLEELALLKLIE-KLEARFLR-GEYTGEYG-LTL-----ERLL 72 (229)
T ss_pred CCceeEEEEecCCcccccchHHhHHHHHHHHHhchHHHhhhhHHHHHHH-HHHHHHHc-ccchHHHh-hhH-----HHHH
Confidence 356899999999999998775554444444433322211 11111000 01111100 00000000 000 1122
Q ss_pred HHHHHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeE
Q 039449 82 DSFVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDF 161 (253)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~ 161 (253)
..................... +.. .++++|++.++|+.++++ ++++++||+....+...++.+|+.+ +|+.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~--~Fd~ 143 (229)
T COG1011 73 ELLERLLGDEDAELVEELLAA-LAK-----LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLD--YFDA 143 (229)
T ss_pred HHHHhhcccccHHHHHHHHHH-HHh-----hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChh--hhhe
Confidence 222222222233333333333 322 248889999999999999 9999999999999999999999988 9999
Q ss_pred eeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHH
Q 039449 162 GVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVA 241 (253)
Q Consensus 162 ~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~e 241 (253)
++++++.|..||+|++|+.+++++| ++|++++||||++.||+.+|+++|+++||+++.+....+. ...++..+.++.+
T Consensus 144 v~~s~~~g~~KP~~~~f~~~~~~~g-~~p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~~~~~~~~-~~~~~~~i~~l~~ 221 (229)
T COG1011 144 VFISEDVGVAKPDPEIFEYALEKLG-VPPEEALFVGDSLENDILGARALGMKTVWINRGGKPLPDA-LEAPDYEISSLAE 221 (229)
T ss_pred EEEecccccCCCCcHHHHHHHHHcC-CCcceEEEECCChhhhhHHHHhcCcEEEEECCCCCCCCCC-ccCCceEEcCHHH
Confidence 9999999999999999999999999 9999999999999999999999999999999644332111 1345689999999
Q ss_pred HHHHHhh
Q 039449 242 VKEFLTS 248 (253)
Q Consensus 242 l~~~l~~ 248 (253)
+.+++..
T Consensus 222 l~~~~~~ 228 (229)
T COG1011 222 LLDLLER 228 (229)
T ss_pred HHHHHhh
Confidence 9988764
No 27
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=99.97 E-value=2e-29 Score=185.67 Aligned_cols=186 Identities=16% Similarity=0.167 Sum_probs=143.9
Q ss_pred cccCceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHH
Q 039449 3 LLSRLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRD 82 (253)
Q Consensus 3 ~~~~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (253)
|+.++++|+||+||||+|+...+..++..+++++|.+.. ...... ..|. +..+. +..
T Consensus 1 ~~~~~~~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~-~~~~~~--------------~~g~----~~~~~----~~~ 57 (188)
T PRK10725 1 MYDRYAGLIFDMDGTILDTEPTHRKAWREVLGRYGLQFD-EQAMVA--------------LNGS----PTWRI----AQA 57 (188)
T ss_pred CCCcceEEEEcCCCcCccCHHHHHHHHHHHHHHcCCCCC-HHHHHH--------------hcCC----CHHHH----HHH
Confidence 456789999999999999999999999999999998632 222211 1221 22222 333
Q ss_pred HHHHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEe
Q 039449 83 SFVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFG 162 (253)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~ 162 (253)
.+...+...+.+.+...+..++..... ....++|+ .++|..|++. ++++|+||+....++..++.+|+.. +|+.+
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~~--~fd~i 132 (188)
T PRK10725 58 IIELNQADLDPHALAREKTEAVKSMLL-DSVEPLPL-IEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLRR--YFDAV 132 (188)
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHh-ccCCCccH-HHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcHh--HceEE
Confidence 344445444555554444444433321 22467786 5899999876 8999999999999999999999998 99999
Q ss_pred eeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 163 VFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 163 ~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
+++++.+..||+|+.|..++++++ +++++|++|||+. +|+++|+++|+++|.+.
T Consensus 133 ~~~~~~~~~KP~p~~~~~~~~~~~-~~~~~~l~igDs~-~di~aA~~aG~~~i~~~ 186 (188)
T PRK10725 133 VAADDVQHHKPAPDTFLRCAQLMG-VQPTQCVVFEDAD-FGIQAARAAGMDAVDVR 186 (188)
T ss_pred EehhhccCCCCChHHHHHHHHHcC-CCHHHeEEEeccH-hhHHHHHHCCCEEEeec
Confidence 999999999999999999999999 9999999999999 89999999999999885
No 28
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=99.97 E-value=2.9e-29 Score=187.97 Aligned_cols=213 Identities=23% Similarity=0.249 Sum_probs=157.3
Q ss_pred CceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHH
Q 039449 6 RLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFV 85 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (253)
++++++||+||||+|+...+.++|.++++++|+...... .... .|.. .... +.....
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~-~~~~--------------~g~~----~~~~----~~~~~~ 57 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEE-IREL--------------HGGG----IARI----IDLLRK 57 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHH-HHHH--------------HCCC----hHHH----HHHHHH
Confidence 479999999999999999999999999999998754321 1110 1111 1111 111122
Q ss_pred HcCCC--CChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEee
Q 039449 86 RAGYD--YDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGV 163 (253)
Q Consensus 86 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~ 163 (253)
..... .+............... .....+.||+.++|.+|+++|+++++.|++....++..++.+|+.+ +|+.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~--~f~~~v 133 (221)
T COG0637 58 LAAGEDPADLAELERLLYEAEALE--LEGLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD--YFDVIV 133 (221)
T ss_pred HhcCCcccCHHHHHHHHHHHHHhh--hcCCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh--hcchhc
Confidence 22211 12222233222222222 2335889999999999999999999999999999999999999999 999999
Q ss_pred eccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCC---hhhhhhcCCcccCCHH
Q 039449 164 FSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPD---AKEWRKSGAIVLPDLV 240 (253)
Q Consensus 164 ~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~---~~~~~~~~~~~i~~l~ 240 (253)
+++++..+||.|+.|..+++++| ++|++|++|+|++ +++.+|+++||.+|.+.. +.+. .............++.
T Consensus 134 ~~~dv~~~KP~Pd~yL~Aa~~Lg-v~P~~CvviEDs~-~Gi~Aa~aAGm~vv~v~~-~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
T COG0637 134 TADDVARGKPAPDIYLLAAERLG-VDPEECVVVEDSP-AGIQAAKAAGMRVVGVPA-GHDRPHLDPLDAHGADTVLLDLA 210 (221)
T ss_pred cHHHHhcCCCCCHHHHHHHHHcC-CChHHeEEEecch-hHHHHHHHCCCEEEEecC-CCCccccchhhhhhcchhhccHH
Confidence 99999999999999999999999 9999999999999 999999999999999995 3331 1111222346777888
Q ss_pred HHHHHHhh
Q 039449 241 AVKEFLTS 248 (253)
Q Consensus 241 el~~~l~~ 248 (253)
++...+.+
T Consensus 211 ~l~~~~~~ 218 (221)
T COG0637 211 ELPALLEA 218 (221)
T ss_pred HHHHHHHh
Confidence 88777654
No 29
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=99.96 E-value=1.6e-28 Score=180.46 Aligned_cols=181 Identities=21% Similarity=0.270 Sum_probs=137.3
Q ss_pred EEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHHcC
Q 039449 9 CITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVRAG 88 (253)
Q Consensus 9 ~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (253)
+|+||+||||+|+...+..++..+++.+|.+.. ...... ..|. +..+ .++..+...+
T Consensus 1 ~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~-~~~~~~--------------~~g~----~~~~----~~~~~~~~~~ 57 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYHYLAWKALADELGIPFD-EEFNES--------------LKGV----SRED----SLERILDLGG 57 (185)
T ss_pred CeEEcCCCccccChHHHHHHHHHHHHHcCCCCC-HHHHHH--------------hcCC----ChHH----HHHHHHHhcC
Confidence 489999999999999999999999999998632 221110 1121 2222 2444455566
Q ss_pred CCCChHHHHHHH---HHHHHHhCC-CCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeee
Q 039449 89 YDYDEDTFEKIF---RRIYASFGS-SAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVF 164 (253)
Q Consensus 89 ~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~ 164 (253)
...+.+...... ...+..... .....++||+.++|++|+++|++++++||+.. ....++.+|+.. +|+.++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~~--~f~~~~~ 133 (185)
T TIGR01990 58 KKYSEEEKEELAERKNDYYVELLKELTPADVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLID--YFDAIVD 133 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCcccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcHh--hCcEEEe
Confidence 555544433322 222222211 12247899999999999999999999998643 567899999998 9999999
Q ss_pred ccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 165 SGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 165 ~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
+.+.+..||+|+.|..++++++ +++++|++|||+. +|+.+|+++|+++|.|.
T Consensus 134 ~~~~~~~kp~p~~~~~~~~~~~-~~~~~~v~vgD~~-~di~aA~~aG~~~i~v~ 185 (185)
T TIGR01990 134 PAEIKKGKPDPEIFLAAAEGLG-VSPSECIGIEDAQ-AGIEAIKAAGMFAVGVG 185 (185)
T ss_pred hhhcCCCCCChHHHHHHHHHcC-CCHHHeEEEecCH-HHHHHHHHcCCEEEecC
Confidence 9998999999999999999999 9999999999999 89999999999999873
No 30
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=99.96 E-value=1.2e-28 Score=185.37 Aligned_cols=128 Identities=23% Similarity=0.266 Sum_probs=106.4
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCc
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEE 192 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 192 (253)
..++||+.++|+.|+++|++++++||+....++..++.+|+.. +|+.++++++.+..||+|+.|..++++++ +++++
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~~--~fd~iv~s~~~~~~KP~p~~~~~~~~~~~-~~p~~ 168 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLDA--HLDLLLSTHTFGYPKEDQRLWQAVAEHTG-LKAER 168 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcHH--HCCEEEEeeeCCCCCCCHHHHHHHHHHcC-CChHH
Confidence 5789999999999999999999999999999999999999988 99999999999999999999999999999 99999
Q ss_pred eEEEcCCcccchhhhhhcCCeE-EEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhh
Q 039449 193 ALHIGDSFRKDYVPAKSVGMHA-LLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTS 248 (253)
Q Consensus 193 ~~~iGD~~~~Di~~a~~~G~~~-i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~ 248 (253)
|++|||++ +|+++|+++|+++ +++.. +...... ......++++++.+++..
T Consensus 169 ~l~igDs~-~di~aA~~aG~~~~~~v~~-~~~~~~~---~~~~~~~~~~~~~~~~~~ 220 (224)
T PRK14988 169 TLFIDDSE-PILDAAAQFGIRYCLGVTN-PDSGIAE---KQYQRHPSLNDYRRLIPS 220 (224)
T ss_pred EEEEcCCH-HHHHHHHHcCCeEEEEEeC-CCCCccc---hhccCCCcHHHHHHHhhh
Confidence 99999999 8999999999986 55653 2222111 122334556655555543
No 31
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=99.96 E-value=1.3e-28 Score=180.96 Aligned_cols=182 Identities=21% Similarity=0.299 Sum_probs=139.1
Q ss_pred ceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHH
Q 039449 7 LRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVR 86 (253)
Q Consensus 7 ~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (253)
+|+|+||+||||+|+.+.+..++..+++++|.... . .... ...| .+..+. +...+..
T Consensus 1 ~~~iiFD~DGTL~ds~~~~~~~~~~~~~~~g~~~~-~-~~~~-------------~~~g----~~~~~~----~~~~~~~ 57 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPLHAQAWKHLADKYGIEFD-K-QYNT-------------SLGG----LSREDI----LRAILKL 57 (185)
T ss_pred CCeEEEcCCCcccCChHHHHHHHHHHHHHcCCCCC-H-HHHH-------------HcCC----CCHHHH----HHHHHHh
Confidence 58999999999999999888899999999997532 1 1110 0122 122333 3333444
Q ss_pred cCCCCChHHHHH---HHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEee
Q 039449 87 AGYDYDEDTFEK---IFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGV 163 (253)
Q Consensus 87 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~ 163 (253)
.+...+.+++.. .+..++..........++||+.++|+.|+++|++++++||+ ..++.+++.+|+.. +|+.++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~--~f~~v~ 133 (185)
T TIGR02009 58 RKPGLSLETIHQLAERKNELYRELLRLTGAEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLTD--YFDAIV 133 (185)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChHH--HCCEee
Confidence 433334444333 33334433332234588999999999999999999999998 55788899999998 999998
Q ss_pred eccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEE
Q 039449 164 FSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLV 217 (253)
Q Consensus 164 ~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~ 217 (253)
.++..+..||+|+.+..++++++ ++++++++|||+. +|+++|+++|+++|.|
T Consensus 134 ~~~~~~~~kp~~~~~~~~~~~~~-~~~~~~v~IgD~~-~di~aA~~~G~~~i~v 185 (185)
T TIGR02009 134 DADEVKEGKPHPETFLLAAELLG-VSPNECVVFEDAL-AGVQAARAAGMFAVAV 185 (185)
T ss_pred ehhhCCCCCCChHHHHHHHHHcC-CCHHHeEEEeCcH-hhHHHHHHCCCeEeeC
Confidence 88888889999999999999999 9999999999999 8999999999999875
No 32
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=99.96 E-value=3.4e-28 Score=189.01 Aligned_cols=213 Identities=20% Similarity=0.230 Sum_probs=144.3
Q ss_pred cCceEEEEecCCceeccC-CCHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHH
Q 039449 5 SRLRCITVDVTGTLLAYK-GELGDYYCMAAKSVGLPCP--DYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVR 81 (253)
Q Consensus 5 ~~~k~i~fD~DGTL~~~~-~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (253)
.++++|+||+||||+|+. ..+..++..+++++|++.. ..+.... +. .+|.+ .....
T Consensus 38 ~~~k~VIFDlDGTLvDS~~~~~~~a~~~~l~~~G~~~~~~~~~~~~~-~~-----------~~g~~----~~~~~----- 96 (286)
T PLN02779 38 ALPEALLFDCDGVLVETERDGHRVAFNDAFKEFGLRPVEWDVELYDE-LL-----------NIGGG----KERMT----- 96 (286)
T ss_pred cCCcEEEEeCceeEEccccHHHHHHHHHHHHHcCCCCCCCCHHHHHH-HH-----------ccCCC----hHHHH-----
Confidence 458999999999999999 8889999999999998432 2221110 00 01111 00000
Q ss_pred HHHHHcCCC--------CCh-------HHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhh
Q 039449 82 DSFVRAGYD--------YDE-------DTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDV 146 (253)
Q Consensus 82 ~~~~~~~~~--------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~ 146 (253)
..+...+.. .+. +.+.......+........+.++||+.++|..|+++|++++|+||+....+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~y~~~~~~~~~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~ 176 (286)
T PLN02779 97 WYFNENGWPTSTIEKAPKDEEERKELVDSLHDRKTELFKELIESGALPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSK 176 (286)
T ss_pred HHHHHcCCCccccccCCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHH
Confidence 001111100 011 11111222233322222224789999999999999999999999999988888
Q ss_pred hhhhcCCCC-CcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCCh
Q 039449 147 ILPALGVNQ-GTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDA 225 (253)
Q Consensus 147 ~l~~~gl~~-~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~ 225 (253)
+++.++... ..+|+.+ .+++.+..||+|++|..++++++ +++++|++|||+. +|+.+|+++|+++|++.+ +....
T Consensus 177 ~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a~~~~~-~~p~~~l~IGDs~-~Di~aA~~aG~~~i~v~~-g~~~~ 252 (286)
T PLN02779 177 IVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNLAAETLG-VDPSRCVVVEDSV-IGLQAAKAAGMRCIVTKS-SYTAD 252 (286)
T ss_pred HHHHhccccccCceEEE-eccccCCCCCCHHHHHHHHHHhC-cChHHEEEEeCCH-HhHHHHHHcCCEEEEEcc-CCccc
Confidence 887764332 1134443 66667778999999999999999 9999999999999 899999999999999983 44433
Q ss_pred hhhhhcCCcccCCHHHHH
Q 039449 226 KEWRKSGAIVLPDLVAVK 243 (253)
Q Consensus 226 ~~~~~~~~~~i~~l~el~ 243 (253)
+.+ ...+++++++.++.
T Consensus 253 ~~l-~~ad~vi~~~~~l~ 269 (286)
T PLN02779 253 EDF-SGADAVFDCLGDVP 269 (286)
T ss_pred ccc-CCCcEEECChhhcc
Confidence 444 34668899999874
No 33
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=99.96 E-value=2e-28 Score=202.74 Aligned_cols=214 Identities=17% Similarity=0.192 Sum_probs=154.1
Q ss_pred cCceEEEEecCCceeccCCCHHHHHHHHHHHcCC-----CCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHH
Q 039449 5 SRLRCITVDVTGTLLAYKGELGDYYCMAAKSVGL-----PCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTC 79 (253)
Q Consensus 5 ~~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (253)
+++++|+||+||||+|+...+..++.+++++++. .....+.+.. ..|. +..+.+..
T Consensus 239 ~m~k~vIFDlDGTLiDs~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~G~----~~~~~~~~- 299 (459)
T PRK06698 239 EMLQALIFDMDGTLFQTDKILELSLDDTFDHLRSLQLWDTVTPIDKYRE--------------IMGV----PLPKVWEA- 299 (459)
T ss_pred HhhhheeEccCCceecchhHHHHHHHHHHHHHhhhcccCCCCCHHHHHH--------------HcCC----ChHHHHHH-
Confidence 3479999999999999999999999999998742 1112222211 1222 22333322
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcce
Q 039449 80 VRDSFVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEW 159 (253)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f 159 (253)
.+...+.. ..++....+.+.+.........+++||+.++|++|+++|++++|+||+....++..++.+|+.. +|
T Consensus 300 ---l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~--~f 373 (459)
T PRK06698 300 ---LLPDHSLE-IREQTDAYFLERLIENIKSGKGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ--WV 373 (459)
T ss_pred ---Hhhhcchh-HHHHHHHHHHHHhHHHHhhcCCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh--hc
Confidence 22222221 1123333343333332222235889999999999999999999999999999999999999998 99
Q ss_pred eEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCH
Q 039449 160 DFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDL 239 (253)
Q Consensus 160 ~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l 239 (253)
+.++++++.. .||+|+.+..++++++ +++|++|||++ +|+.+|+++|+.+|++.+ +......+ ..++++++++
T Consensus 374 ~~i~~~d~v~-~~~kP~~~~~al~~l~---~~~~v~VGDs~-~Di~aAk~AG~~~I~v~~-~~~~~~~~-~~~d~~i~~l 446 (459)
T PRK06698 374 TETFSIEQIN-SLNKSDLVKSILNKYD---IKEAAVVGDRL-SDINAAKDNGLIAIGCNF-DFAQEDEL-AQADIVIDDL 446 (459)
T ss_pred ceeEecCCCC-CCCCcHHHHHHHHhcC---cceEEEEeCCH-HHHHHHHHCCCeEEEEeC-CCCccccc-CCCCEEeCCH
Confidence 9988877663 4678889999998876 58999999999 999999999999999984 33322333 3467899999
Q ss_pred HHHHHHHhhhh
Q 039449 240 VAVKEFLTSEI 250 (253)
Q Consensus 240 ~el~~~l~~~~ 250 (253)
.|+.+++.+..
T Consensus 447 ~el~~~l~~~~ 457 (459)
T PRK06698 447 LELKGILSTVQ 457 (459)
T ss_pred HHHHHHHHHHh
Confidence 99999887643
No 34
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=99.95 E-value=5.9e-28 Score=176.02 Aligned_cols=175 Identities=29% Similarity=0.405 Sum_probs=134.9
Q ss_pred EEEecCCceeccCCCHHHHHHH-HHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHHcC
Q 039449 10 ITVDVTGTLLAYKGELGDYYCM-AAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVRAG 88 (253)
Q Consensus 10 i~fD~DGTL~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (253)
|+||+||||+++...+.+++.. +++.++.+ ...+.+... . ..+..+. +...+.+.+
T Consensus 1 iifD~dgtL~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------------~----~~~~~~~----~~~~~~~~~ 57 (176)
T PF13419_consen 1 IIFDLDGTLVDTDPAIFRALQRLALEEFGLE-ISAEELREL--------------F----GKSYEEA----LERLLERFG 57 (176)
T ss_dssp EEEESBTTTEEHHHHHHHHHHHHHHHHTTHH-HHHHHHHHH--------------T----TSHHHHH----HHHHHHHHH
T ss_pred cEEECCCCcEeCHHHHHHHHHHHHHHHhCCC-CCHHHHHHH--------------h----CCCHHHH----HHHhhhccc
Confidence 7999999999988877777776 46677654 111111110 0 1122233 333343333
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecccc
Q 039449 89 YDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLE 168 (253)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~ 168 (253)
.. ...+.+.+.++... ....++||+.++|+.|+++|++++++||++...++..++.+|+.. +|+.++++++.
T Consensus 58 ~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~--~f~~i~~~~~~ 129 (176)
T PF13419_consen 58 ID--PEEIQELFREYNLE----SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLDD--YFDEIISSDDV 129 (176)
T ss_dssp HH--HHHHHHHHHHHHHH----GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGG--GCSEEEEGGGS
T ss_pred hh--HHHHHHHhhhhhhh----hccchhhhhhhhhhhcccccceeEEeecCCccccccccccccccc--ccccccccchh
Confidence 21 34445555554211 224899999999999999999999999999999999999999998 99999999999
Q ss_pred CccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEE
Q 039449 169 GVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLV 217 (253)
Q Consensus 169 ~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~ 217 (253)
+..||+++.|..++++++ ++|+++++|||++ .|+.+|+++|+++|++
T Consensus 130 ~~~Kp~~~~~~~~~~~~~-~~p~~~~~vgD~~-~d~~~A~~~G~~~i~v 176 (176)
T PF13419_consen 130 GSRKPDPDAYRRALEKLG-IPPEEILFVGDSP-SDVEAAKEAGIKTIWV 176 (176)
T ss_dssp SSSTTSHHHHHHHHHHHT-SSGGGEEEEESSH-HHHHHHHHTTSEEEEE
T ss_pred hhhhhHHHHHHHHHHHcC-CCcceEEEEeCCH-HHHHHHHHcCCeEEeC
Confidence 999999999999999999 9999999999999 8999999999999986
No 35
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.95 E-value=1.7e-26 Score=205.94 Aligned_cols=210 Identities=18% Similarity=0.243 Sum_probs=156.5
Q ss_pred ccCceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHH
Q 039449 4 LSRLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDS 83 (253)
Q Consensus 4 ~~~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (253)
.+++++|+||+||||+|+...+.+++..+++++|++. ..+..... .|. +..++ +...
T Consensus 72 ~~~ikaVIFDlDGTLiDS~~~~~~a~~~~~~~~G~~i-t~e~~~~~--------------~G~----~~~~~----~~~~ 128 (1057)
T PLN02919 72 WGKVSAVLFDMDGVLCNSEEPSRRAAVDVFAEMGVEV-TVEDFVPF--------------MGT----GEANF----LGGV 128 (1057)
T ss_pred CCCCCEEEECCCCCeEeChHHHHHHHHHHHHHcCCCC-CHHHHHHH--------------hCC----CHHHH----HHHH
Confidence 4578999999999999999999999999999999863 22222211 121 22222 2222
Q ss_pred HHHcCCC-CChHHHHHHH-HHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC-CCccee
Q 039449 84 FVRAGYD-YDEDTFEKIF-RRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVN-QGTEWD 160 (253)
Q Consensus 84 ~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~-~~~~f~ 160 (253)
....+.. .+.++..+.+ ..+...........++||+.++|++|+++|++++|+||.....++..++.+|+. . +|+
T Consensus 129 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~--~Fd 206 (1057)
T PLN02919 129 ASVKGVKGFDPDAAKKRFFEIYLEKYAKPNSGIGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLS--MFD 206 (1057)
T ss_pred HHhcCCCCCCHHHHHHHHHHHHHHHhhhcccCccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChh--HCC
Confidence 3333332 2333332222 222222211112357999999999999999999999999999999999999996 5 899
Q ss_pred EeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhh-hcCCcccCCH
Q 039449 161 FGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWR-KSGAIVLPDL 239 (253)
Q Consensus 161 ~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~-~~~~~~i~~l 239 (253)
.++.+++.+..||+|++|..++++++ +++++|++|||+. +|+++|+++|+.+|++.+ +.. ...+. ..++++++++
T Consensus 207 ~iv~~~~~~~~KP~Pe~~~~a~~~lg-v~p~e~v~IgDs~-~Di~AA~~aGm~~I~v~~-~~~-~~~L~~~~a~~vi~~l 282 (1057)
T PLN02919 207 AIVSADAFENLKPAPDIFLAAAKILG-VPTSECVVIEDAL-AGVQAARAAGMRCIAVTT-TLS-EEILKDAGPSLIRKDI 282 (1057)
T ss_pred EEEECcccccCCCCHHHHHHHHHHcC-cCcccEEEEcCCH-HHHHHHHHcCCEEEEECC-CCC-HHHHhhCCCCEEECCh
Confidence 99999999999999999999999999 9999999999999 899999999999999995 433 34443 3345899999
Q ss_pred HHH
Q 039449 240 VAV 242 (253)
Q Consensus 240 ~el 242 (253)
.++
T Consensus 283 ~el 285 (1057)
T PLN02919 283 GNI 285 (1057)
T ss_pred HHC
Confidence 996
No 36
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=99.94 E-value=1.8e-26 Score=169.24 Aligned_cols=175 Identities=20% Similarity=0.231 Sum_probs=126.9
Q ss_pred eEEEEecCCceeccCCCHHHHHHHHHH-----HcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHH
Q 039449 8 RCITVDVTGTLLAYKGELGDYYCMAAK-----SVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRD 82 (253)
Q Consensus 8 k~i~fD~DGTL~~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (253)
++|+||+||||+|+...+..++.+++. ++|++......+...+... +|.. +..
T Consensus 1 ~~viFDlDGTL~ds~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~----------~g~~------------~~~ 58 (184)
T TIGR01993 1 DVWFFDLDNTLYPHSAGIFLQIDRNITEFVAARLKLSEEEARVLRKDYYRE----------YGTT------------LAG 58 (184)
T ss_pred CeEEEeCCCCCCCCcccHHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHH----------HchH------------HHH
Confidence 479999999999998888888776654 4565433222222111100 1110 111
Q ss_pred HHHHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEe
Q 039449 83 SFVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFG 162 (253)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~ 162 (253)
.+.... .+.+.+...+... .......++||+.++|+.|+ ++++++||++...+...++.+|+.. +|+.+
T Consensus 59 ~~~~~~--~~~~~~~~~~~~~----~~~~~~~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~~--~fd~i 127 (184)
T TIGR01993 59 LMILHE--IDADEYLRYVHGR----LPYEKLKPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIED--CFDGI 127 (184)
T ss_pred HHHhhC--CCHHHHHHHHhcc----CCHHhCCCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcHh--hhCeE
Confidence 122222 2333333333221 11123478899999999997 4789999999999999999999988 99999
Q ss_pred eeccccCc----cCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEE
Q 039449 163 VFSGLEGV----EKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLV 217 (253)
Q Consensus 163 ~~~~~~~~----~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~ 217 (253)
+.++..+. .||+|+.|..++++++ ++++++++|||++ .|+.+|+++|+++|+|
T Consensus 128 ~~~~~~~~~~~~~KP~p~~~~~~~~~~~-~~~~~~l~vgD~~-~di~aA~~~G~~~i~v 184 (184)
T TIGR01993 128 FCFDTANPDYLLPKPSPQAYEKALREAG-VDPERAIFFDDSA-RNIAAAKALGMKTVLV 184 (184)
T ss_pred EEeecccCccCCCCCCHHHHHHHHHHhC-CCccceEEEeCCH-HHHHHHHHcCCEEeeC
Confidence 99888877 4999999999999999 9999999999999 8999999999999975
No 37
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=99.94 E-value=1.8e-25 Score=165.57 Aligned_cols=183 Identities=11% Similarity=0.124 Sum_probs=129.3
Q ss_pred EEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHH--
Q 039449 9 CITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVR-- 86 (253)
Q Consensus 9 ~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 86 (253)
+|+||+||||+|+...+..++..+++++|......+.+...+ |.+..-....+....+...+..
T Consensus 2 ~viFD~DGTLiDs~~~~~~a~~~~~~~~g~~~~~~~~~~~~~--------------g~~~~~~~~~~~~~~~~~~~~~~~ 67 (197)
T TIGR01548 2 ALVLDMDGVMADVSQSYRRAIIDTVEHFGGVSVTHADIDHTK--------------LAGNANNDWQLTHRLVVDGLNSAS 67 (197)
T ss_pred ceEEecCceEEechHHHHHHHHHHHHHHcCCCCCHHHHHHHH--------------HccCccCchHHHHHHHHHhhhccc
Confidence 689999999999999999999999999986544444333211 1110000000000001111111
Q ss_pred ---cCCCCChHHHHHHHHHHHHHhCC-C-------CCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 87 ---AGYDYDEDTFEKIFRRIYASFGS-S-------APYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 87 ---~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
.......+.+...+..++..... . ....+.++..++|+.|++.|++++|+||+....++.+++.+|+..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~ 147 (197)
T TIGR01548 68 SERVRDAPTLEAVTAQFQALYQGVGYYRDLATLGLIEDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEI 147 (197)
T ss_pred chhccCCccHHHHHHHHHHHHcCCcccccccchhhhccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCchh
Confidence 01122345555556555543210 0 012345567999999999999999999999999999999999998
Q ss_pred CcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhc
Q 039449 156 GTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSV 210 (253)
Q Consensus 156 ~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~ 210 (253)
+|+.++++++... ||+|+.+..++++++ +++++|++|||++ +|+.+|+++
T Consensus 148 --~f~~~~~~~~~~~-KP~p~~~~~~~~~~~-~~~~~~i~vGD~~-~Di~aA~~a 197 (197)
T TIGR01548 148 --LFPVQIWMEDCPP-KPNPEPLILAAKALG-VEACHAAMVGDTV-DDIITGRKA 197 (197)
T ss_pred --hCCEEEeecCCCC-CcCHHHHHHHHHHhC-cCcccEEEEeCCH-HHHHHHHhC
Confidence 9999888888776 999999999999999 9999999999999 899999875
No 38
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=99.94 E-value=5.2e-26 Score=170.43 Aligned_cols=103 Identities=32% Similarity=0.451 Sum_probs=91.6
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcch--hhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCC
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRY--QDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAP 190 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~--~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 190 (253)
..++||+.++|+.|+++|++++++||+.... ....+...++.. +|+.++.+++.+..||+|+.|..+++++| +++
T Consensus 93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~~--~fd~v~~s~~~~~~KP~p~~~~~~~~~~g-~~~ 169 (211)
T TIGR02247 93 TKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIMA--LFDAVVESCLEGLRKPDPRIYQLMLERLG-VAP 169 (211)
T ss_pred cccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhHh--hCCEEEEeeecCCCCCCHHHHHHHHHHcC-CCH
Confidence 5789999999999999999999999987654 333344567777 89999999888889999999999999999 999
Q ss_pred CceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 191 EEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 191 ~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
++|+||||+. .|+.+|+++|+++|++.+
T Consensus 170 ~~~l~i~D~~-~di~aA~~aG~~~i~v~~ 197 (211)
T TIGR02247 170 EECVFLDDLG-SNLKPAAALGITTIKVSD 197 (211)
T ss_pred HHeEEEcCCH-HHHHHHHHcCCEEEEECC
Confidence 9999999999 899999999999999984
No 39
>PLN02811 hydrolase
Probab=99.93 E-value=3.6e-25 Score=166.64 Aligned_cols=200 Identities=19% Similarity=0.190 Sum_probs=142.7
Q ss_pred cCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHHcCCC--C
Q 039449 14 VTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVRAGYD--Y 91 (253)
Q Consensus 14 ~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 91 (253)
+||||+|+...+..++..+++++|+.. ..+.... ..|. +..+. +...+...+.+ .
T Consensus 1 ~DGTL~Ds~~~~~~a~~~~~~~~g~~~-~~~~~~~--------------~~G~----~~~~~----~~~~~~~~~~~~~~ 57 (220)
T PLN02811 1 MDGLLLDTEKFYTEVQEKILARYGKTF-DWSLKAK--------------MMGK----KAIEA----ARIFVEESGLSDSL 57 (220)
T ss_pred CCCcceecHHHHHHHHHHHHHHcCCCC-CHHHHHH--------------ccCC----CHHHH----HHHHHHHhCCCCCC
Confidence 699999999999999999999999863 3221111 1232 22222 23334444443 2
Q ss_pred ChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhh-hhhhcCCCCCcceeEeeecc--cc
Q 039449 92 DEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDV-ILPALGVNQGTEWDFGVFSG--LE 168 (253)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~-~l~~~gl~~~~~f~~~~~~~--~~ 168 (253)
..+.+......++..... ...++||+.++|+.|+++|++++|+||........ ..+..++.. +|+.+++++ +.
T Consensus 58 ~~~~~~~~~~~~~~~~~~--~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~~--~f~~i~~~~~~~~ 133 (220)
T PLN02811 58 SPEDFLVEREAMLQDLFP--TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELFS--LMHHVVTGDDPEV 133 (220)
T ss_pred CHHHHHHHHHHHHHHHHh--hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHHh--hCCEEEECChhhc
Confidence 233444434444433221 24788999999999999999999999998764443 344457777 899888888 77
Q ss_pred CccCCCHHHHHHHHHHhC--CCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHH
Q 039449 169 GVEKPDPRIYEIALERAG--NIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVK 243 (253)
Q Consensus 169 ~~~kp~~~~~~~~~~~~~--~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~ 243 (253)
+..||+|++|..++++++ .+++++|++|||+. .|+++|+++|+++|++.+ +....... ..+++++.++.|+.
T Consensus 134 ~~~KP~p~~~~~a~~~~~~~~~~~~~~v~IgDs~-~di~aA~~aG~~~i~v~~-~~~~~~~~-~~~d~vi~~~~e~~ 207 (220)
T PLN02811 134 KQGKPAPDIFLAAARRFEDGPVDPGKVLVFEDAP-SGVEAAKNAGMSVVMVPD-PRLDKSYC-KGADQVLSSLLDFK 207 (220)
T ss_pred cCCCCCcHHHHHHHHHhCCCCCCccceEEEeccH-hhHHHHHHCCCeEEEEeC-CCCcHhhh-hchhhHhcCHhhCC
Confidence 788999999999999993 28999999999999 899999999999999984 33333332 34567899998764
No 40
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=99.93 E-value=9.7e-25 Score=161.85 Aligned_cols=185 Identities=15% Similarity=0.221 Sum_probs=127.8
Q ss_pred eEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHHc
Q 039449 8 RCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVRA 87 (253)
Q Consensus 8 k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (253)
.+|+||+||||++.... ..+.......+. ........+... ..... ...+.++..+++ ....+..
T Consensus 1 ~~viFDldgvL~d~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~----~~~G~~~~~~~~----~~~~~~~ 65 (199)
T PRK09456 1 MLYIFDLGNVIVDIDFN--RVLGVWSDLSRV---PLATLKKRFTMG--EAFHQ----HERGEISDEAFA----EALCHEM 65 (199)
T ss_pred CEEEEeCCCccccCcHH--HHHHHHHHhcCC---CHHHHHHHHhcC--cHHHH----HhcCCCCHHHHH----HHHHHHh
Confidence 37999999999997532 111111111222 222222222110 00000 011234545543 3345556
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhh-cCCCCCcceeEeeecc
Q 039449 88 GYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPA-LGVNQGTEWDFGVFSG 166 (253)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~-~gl~~~~~f~~~~~~~ 166 (253)
+.+.+.+.+...+...+ ..++||+.++|+.|+++|++++|+||++.......+.. .++.. +|+.+++++
T Consensus 66 ~~~~~~~~~~~~~~~~~--------~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~--~fd~v~~s~ 135 (199)
T PRK09456 66 ALSLSYEQFAHGWQAVF--------VALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRA--AADHIYLSQ 135 (199)
T ss_pred CCCCCHHHHHHHHHHHH--------hccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHH--hcCEEEEec
Confidence 66555454444433322 25789999999999999999999999988766554444 46777 899999999
Q ss_pred ccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 167 LEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 167 ~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
+.+..||+|+.|..++++++ ++|+++++|||+. .|+.+|+++|++++++.+
T Consensus 136 ~~~~~KP~p~~~~~~~~~~~-~~p~~~l~vgD~~-~di~aA~~aG~~~i~~~~ 186 (199)
T PRK09456 136 DLGMRKPEARIYQHVLQAEG-FSAADAVFFDDNA-DNIEAANALGITSILVTD 186 (199)
T ss_pred ccCCCCCCHHHHHHHHHHcC-CChhHeEEeCCCH-HHHHHHHHcCCEEEEecC
Confidence 99999999999999999999 9999999999999 899999999999999984
No 41
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=99.93 E-value=1.2e-24 Score=159.72 Aligned_cols=100 Identities=36% Similarity=0.622 Sum_probs=92.9
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCc
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEE 192 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 192 (253)
.+++||+.++|+.|++.|++++++||+.... ......+|+.. +|+.++++++.+..||+|+.|..++++++ +++++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~--~f~~i~~~~~~~~~KP~~~~~~~~~~~~~-~~~~~ 159 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD--LFDVVIFSGDVGRGKPDPDIYLLALKKLG-LKPEE 159 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH--HCCEEEEcCCCCCCCCCHHHHHHHHHHcC-CCcce
Confidence 4789999999999999999999999999887 66666699988 99999999999999999999999999999 99999
Q ss_pred eEEEcCCcccchhhhhhcCCeEEEE
Q 039449 193 ALHIGDSFRKDYVPAKSVGMHALLV 217 (253)
Q Consensus 193 ~~~iGD~~~~Di~~a~~~G~~~i~~ 217 (253)
+++|||++ .|+.+|+++|+.+|++
T Consensus 160 ~~~vgD~~-~di~aA~~~G~~~i~v 183 (183)
T TIGR01509 160 CLFVDDSP-AGIEAAKAAGMHTVLV 183 (183)
T ss_pred EEEEcCCH-HHHHHHHHcCCEEEeC
Confidence 99999999 8999999999999975
No 42
>PHA02597 30.2 hypothetical protein; Provisional
Probab=99.92 E-value=6.8e-24 Score=157.24 Aligned_cols=191 Identities=12% Similarity=0.106 Sum_probs=124.6
Q ss_pred ceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHH
Q 039449 7 LRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVR 86 (253)
Q Consensus 7 ~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (253)
+|+|+||+||||+|+. ..+..+++++|++. +++...+ |...... +.. .
T Consensus 2 ~k~viFDlDGTLiD~~----~~~~~~~~~~g~~~---~~~~~~~--------------g~~~~~~--------~~~---~ 49 (197)
T PHA02597 2 KPTILTDVDGVLLSWQ----SGLPYFAQKYNIPT---DHILKMI--------------QDERFRD--------PGE---L 49 (197)
T ss_pred CcEEEEecCCceEchh----hccHHHHHhcCCCH---HHHHHHH--------------hHhhhcC--------HHH---H
Confidence 7999999999999955 44567778888742 2222111 1100000 111 1
Q ss_pred cCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCc--ceeEeee
Q 039449 87 AGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGT--EWDFGVF 164 (253)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~--~f~~~~~ 164 (253)
++ .+.+...+.+..+..... .....++||+.++|+.|++. ++++++||.........++.+++..+. +|+.++.
T Consensus 50 ~~--~~~~~~~~~~~~~~~~~~-~~~~~~~pG~~e~L~~L~~~-~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~~i~~ 125 (197)
T PHA02597 50 FG--CDQELAKKLIEKYNNSDF-IRYLSAYDDALDVINKLKED-YDFVAVTALGDSIDALLNRQFNLNALFPGAFSEVLM 125 (197)
T ss_pred hc--ccHHHHHHHhhhhhHHHH-HHhccCCCCHHHHHHHHHhc-CCEEEEeCCccchhHHHHhhCCHHHhCCCcccEEEE
Confidence 11 122333333333332111 11246899999999999987 467888988776666567777776511 4455555
Q ss_pred ccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhc--CCeEEEEcCCCCCChhhhhhcCCcccCCHHHH
Q 039449 165 SGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSV--GMHALLVDRFKTPDAKEWRKSGAIVLPDLVAV 242 (253)
Q Consensus 165 ~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~--G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el 242 (253)
++. .||+|+.+..++++++ +++++||||+. +|+.+|+++ |+++|++++ +.. .. .+...+.+.|+.|+
T Consensus 126 ~~~---~~~kp~~~~~a~~~~~---~~~~v~vgDs~-~di~aA~~a~~Gi~~i~~~~-~~~--~~-~~~~~~~~~~~~~~ 194 (197)
T PHA02597 126 CGH---DESKEKLFIKAKEKYG---DRVVCFVDDLA-HNLDAAHEALSQLPVIHMLR-GER--DH-IPKLAHRVKSWNDI 194 (197)
T ss_pred ecc---CcccHHHHHHHHHHhC---CCcEEEeCCCH-HHHHHHHHHHcCCcEEEecc-hhh--cc-ccchhhhhccHHHH
Confidence 554 2678899999999998 78899999999 899999999 999999984 422 11 12344899999998
Q ss_pred HH
Q 039449 243 KE 244 (253)
Q Consensus 243 ~~ 244 (253)
.+
T Consensus 195 ~~ 196 (197)
T PHA02597 195 EN 196 (197)
T ss_pred hc
Confidence 64
No 43
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=99.92 E-value=1.8e-23 Score=157.68 Aligned_cols=197 Identities=16% Similarity=0.236 Sum_probs=131.1
Q ss_pred ccCceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHH
Q 039449 4 LSRLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDS 83 (253)
Q Consensus 4 ~~~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (253)
++++++++||+||||+++. .+..+++.+|.... .... .... ..+.++..+..+..
T Consensus 11 ~~~~k~iiFD~DGTL~~~~-----~~~~l~~~~g~~~~-~~~~-------~~~~--------~~g~~~~~~~~~~~---- 65 (219)
T TIGR00338 11 LRSKKLVVFDMDSTLINAE-----TIDEIAKIAGVEEE-VSEI-------TERA--------MRGELDFKASLRER---- 65 (219)
T ss_pred hccCCEEEEeCcccCCCch-----HHHHHHHHhCCHHH-HHHH-------HHHH--------HcCCCCHHHHHHHH----
Confidence 4668999999999999963 45566667765311 1111 0100 01223333332222
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEee
Q 039449 84 FVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGV 163 (253)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~ 163 (253)
+..+. ....+ .+..... ...++||+.++|+.|+++|++++|+||+....++.+++.+|+.. +|...+
T Consensus 66 ~~~~~-~~~~~----~~~~~~~------~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~--~~~~~~ 132 (219)
T TIGR00338 66 VALLK-GLPVE----LLKEVRE------NLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA--AFANRL 132 (219)
T ss_pred HHHhC-CCCHH----HHHHHHh------cCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc--eEeeEE
Confidence 22221 11222 2222221 13688999999999999999999999999999999999999987 665432
Q ss_pred ec----------cccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCC
Q 039449 164 FS----------GLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGA 233 (253)
Q Consensus 164 ~~----------~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~ 233 (253)
.. ......+|++..++.++++++ +++++|++|||+. +|+.+|+++|+..++ + + .+.+.....
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~-~~~~~~i~iGDs~-~Di~aa~~ag~~i~~-~--~---~~~~~~~a~ 204 (219)
T TIGR00338 133 EVEDGKLTGLVEGPIVDASYKGKTLLILLRKEG-ISPENTVAVGDGA-NDLSMIKAAGLGIAF-N--A---KPKLQQKAD 204 (219)
T ss_pred EEECCEEEEEecCcccCCcccHHHHHHHHHHcC-CCHHHEEEEECCH-HHHHHHHhCCCeEEe-C--C---CHHHHHhch
Confidence 21 112234678999999999999 9999999999999 999999999998654 3 1 233344556
Q ss_pred cccC--CHHHHHHHH
Q 039449 234 IVLP--DLVAVKEFL 246 (253)
Q Consensus 234 ~~i~--~l~el~~~l 246 (253)
+++. ++.++.++|
T Consensus 205 ~~i~~~~~~~~~~~~ 219 (219)
T TIGR00338 205 ICINKKDLTDILPLL 219 (219)
T ss_pred hccCCCCHHHHHhhC
Confidence 6655 778887764
No 44
>PLN02954 phosphoserine phosphatase
Probab=99.91 E-value=8.9e-23 Score=154.39 Aligned_cols=203 Identities=12% Similarity=0.074 Sum_probs=134.7
Q ss_pred ccCceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHH
Q 039449 4 LSRLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDS 83 (253)
Q Consensus 4 ~~~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (253)
.+++|+|+||+||||+++ ..+..+++.+|... ...+....+ .++.++..+.++ ..
T Consensus 9 ~~~~k~viFDfDGTL~~~-----~~~~~~~~~~g~~~-~~~~~~~~~---------------~~g~~~~~~~~~----~~ 63 (224)
T PLN02954 9 WRSADAVCFDVDSTVCVD-----EGIDELAEFCGAGE-AVAEWTAKA---------------MGGSVPFEEALA----AR 63 (224)
T ss_pred HccCCEEEEeCCCcccch-----HHHHHHHHHcCChH-HHHHHHHHH---------------HCCCCCHHHHHH----HH
Confidence 356899999999999995 44577788888642 112221110 122334333322 22
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEee
Q 039449 84 FVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGV 163 (253)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~ 163 (253)
+.... ...+.+ ..++... ...++||+.++|+.|+++|++++|+|++....++.+++.+|+....+|...+
T Consensus 64 ~~~~~--~~~~~~----~~~~~~~----~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~ 133 (224)
T PLN02954 64 LSLFK--PSLSQV----EEFLEKR----PPRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQI 133 (224)
T ss_pred HHHcC--CCHHHH----HHHHHHc----cCCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEE
Confidence 22222 122222 2222221 1368999999999999999999999999999999999999997322554322
Q ss_pred eccc------------cCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhc
Q 039449 164 FSGL------------EGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKS 231 (253)
Q Consensus 164 ~~~~------------~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~ 231 (253)
.... ....++|++.++.+++.++ . +++++|||+. +|+.+++.+|+.++...+ +....+.....
T Consensus 134 ~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~~~~~~-~--~~~i~iGDs~-~Di~aa~~~~~~~~~~~~-~~~~~~~~~~~ 208 (224)
T PLN02954 134 LFGDSGEYAGFDENEPTSRSGGKAEAVQHIKKKHG-Y--KTMVMIGDGA-TDLEARKPGGADLFIGYG-GVQVREAVAAK 208 (224)
T ss_pred EEcCCCcEECccCCCcccCCccHHHHHHHHHHHcC-C--CceEEEeCCH-HHHHhhhcCCCCEEEecC-CCccCHHHHhc
Confidence 2111 1234678899999998888 5 6899999999 999999998988766543 22222333344
Q ss_pred CCcccCCHHHHHHHH
Q 039449 232 GAIVLPDLVAVKEFL 246 (253)
Q Consensus 232 ~~~~i~~l~el~~~l 246 (253)
.+++++++.+|.+++
T Consensus 209 ~~~~i~~~~el~~~~ 223 (224)
T PLN02954 209 ADWFVTDFQDLIEVL 223 (224)
T ss_pred CCEEECCHHHHHHhh
Confidence 678999999998765
No 45
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=99.91 E-value=1.6e-23 Score=149.21 Aligned_cols=154 Identities=27% Similarity=0.415 Sum_probs=115.6
Q ss_pred EEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHHcC
Q 039449 9 CITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVRAG 88 (253)
Q Consensus 9 ~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (253)
+|+||+||||+|+...+..++...++++|. ..+.+... .|. ....+ .....
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~---~~~~~~~~--------------~g~----~~~~~-----~~~~~--- 51 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEETLEEFGE---DFQALKAL--------------RGL----AEELL-----YRIAT--- 51 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHHHHHhcc---cHHHHHHH--------------Hcc----ChHHH-----HHHHH---
Confidence 489999999999988888899999998874 22211110 111 10111 11010
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecccc
Q 039449 89 YDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLE 168 (253)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~ 168 (253)
..+++.. + ......+||+.++|+.|+++|++++++||+....+...++.+ +.. +|+.++.++..
T Consensus 52 ---~~~~~~~-----~-----~~~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l~~--~f~~i~~~~~~ 115 (154)
T TIGR01549 52 ---SFEELLG-----Y-----DAEEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-LGD--YFDLILGSDEF 115 (154)
T ss_pred ---HHHHHhC-----c-----chhheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-HHh--cCcEEEecCCC
Confidence 0111111 1 112356799999999999999999999999999999888887 776 88888888877
Q ss_pred CccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcC
Q 039449 169 GVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVG 211 (253)
Q Consensus 169 ~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G 211 (253)
+ .||+|+.+..++++++ +++ +|++|||+. +|+.+|+++|
T Consensus 116 ~-~Kp~~~~~~~~~~~~~-~~~-~~l~iGDs~-~Di~aa~~aG 154 (154)
T TIGR01549 116 G-AKPEPEIFLAALESLG-LPP-EVLHVGDNL-NDIEGARNAG 154 (154)
T ss_pred C-CCcCHHHHHHHHHHcC-CCC-CEEEEeCCH-HHHHHHHHcc
Confidence 7 9999999999999999 999 999999998 8999999987
No 46
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=99.91 E-value=9.4e-23 Score=149.68 Aligned_cols=208 Identities=17% Similarity=0.216 Sum_probs=159.1
Q ss_pred ccCceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHH
Q 039449 4 LSRLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDS 83 (253)
Q Consensus 4 ~~~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (253)
...+.+++||+||||+|+...+.++++..+.++|... ++..... ..|. ...+. .+..
T Consensus 7 ~~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~-~~~~~~~--------------~mG~----~~~ea----a~~~ 63 (222)
T KOG2914|consen 7 SLKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPY-PWDVKVK--------------SMGK----RTSEA----ARLF 63 (222)
T ss_pred ccceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCC-hHHHHHH--------------HcCC----CHHHH----HHHH
Confidence 4568899999999999999999999999999999843 3222111 1222 22222 3333
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcC-CCCCcceeEe
Q 039449 84 FVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALG-VNQGTEWDFG 162 (253)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~g-l~~~~~f~~~ 162 (253)
+.....+.+.+++.....+........ ..+.||+..+++.|+.+|++++++|+.+....+.++++++ +.. .|..+
T Consensus 64 ~~~~~dp~s~ee~~~e~~~~~~~~~~~--~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~~--~f~~~ 139 (222)
T KOG2914|consen 64 VKKLPDPVSREEFNKEEEEILDRLFMN--SILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIFK--NFSHV 139 (222)
T ss_pred HhhcCCCCCHHHHHHHHHHHHHHhccc--cccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHHH--hcCCC
Confidence 456667788888887777766665533 4778999999999999999999999999999888888887 555 67766
Q ss_pred ee--ccccCccCCCHHHHHHHHHHhCCCCC-CceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCH
Q 039449 163 VF--SGLEGVEKPDPRIYEIALERAGNIAP-EEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDL 239 (253)
Q Consensus 163 ~~--~~~~~~~kp~~~~~~~~~~~~~~~~~-~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l 239 (253)
+. ..++..+||+|++|..++++++ ..+ +.|++++|++ ..+++|+.+|+++|+++.+... ..+......+++++
T Consensus 140 v~~d~~~v~~gKP~Pdi~l~A~~~l~-~~~~~k~lVfeds~-~Gv~aa~aagm~vi~v~~~~~~--~~~~~~~~~~~~~~ 215 (222)
T KOG2914|consen 140 VLGDDPEVKNGKPDPDIYLKAAKRLG-VPPPSKCLVFEDSP-VGVQAAKAAGMQVVGVATPDLS--NLFSAGATLILESL 215 (222)
T ss_pred eecCCccccCCCCCchHHHHHHHhcC-CCCccceEEECCCH-HHHHHHHhcCCeEEEecCCCcc--hhhhhccceecccc
Confidence 66 4556777999999999999999 877 9999999999 8999999999999999852222 23334455666666
Q ss_pred HHH
Q 039449 240 VAV 242 (253)
Q Consensus 240 ~el 242 (253)
.+.
T Consensus 216 ~~~ 218 (222)
T KOG2914|consen 216 EDF 218 (222)
T ss_pred ccc
Confidence 543
No 47
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=99.91 E-value=2.1e-23 Score=152.27 Aligned_cols=129 Identities=21% Similarity=0.192 Sum_probs=101.1
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcc---------------hhhhhhhhcCCCCCcceeEeeecc-----ccCccCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYR---------------YQDVILPALGVNQGTEWDFGVFSG-----LEGVEKP 173 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~---------------~~~~~l~~~gl~~~~~f~~~~~~~-----~~~~~kp 173 (253)
.++||+.++|++|+++|++++|+||.... .....++.+|+ .|+.++.+. ..+..||
T Consensus 29 ~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~----~f~~i~~~~~~~~~~~~~~KP 104 (181)
T PRK08942 29 IPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRGG----RLDGIYYCPHHPEDGCDCRKP 104 (181)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCC----ccceEEECCCCCCCCCcCCCC
Confidence 77899999999999999999999998731 12334555555 355555432 3466899
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcC--CcccCCHHHHHHHHhhh
Q 039449 174 DPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSG--AIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~--~~~i~~l~el~~~l~~~ 249 (253)
+|++|..+++.++ ++++++++|||+. +|+.+|+++|+.++++. ++..........+ +++++++.++.+++.+.
T Consensus 105 ~p~~~~~~~~~l~-~~~~~~~~VgDs~-~Di~~A~~aG~~~i~v~-~g~~~~~~~~~~~~~~~ii~~l~el~~~l~~~ 179 (181)
T PRK08942 105 KPGMLLSIAERLN-IDLAGSPMVGDSL-RDLQAAAAAGVTPVLVR-TGKGVTTLAEGAAPGTWVLDSLADLPQALKKQ 179 (181)
T ss_pred CHHHHHHHHHHcC-CChhhEEEEeCCH-HHHHHHHHCCCeEEEEc-CCCCchhhhcccCCCceeecCHHHHHHHHHhh
Confidence 9999999999999 9999999999999 89999999999999997 3433322222334 68999999999988754
No 48
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=99.90 E-value=9.7e-24 Score=153.62 Aligned_cols=175 Identities=22% Similarity=0.270 Sum_probs=122.6
Q ss_pred EEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHHcC
Q 039449 9 CITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVRAG 88 (253)
Q Consensus 9 ~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (253)
+|+||+||||+|+...+..++..++.+.+.....+.. ..+...+... ..| ......+.....+....+.++
T Consensus 1 ~viFD~DGTL~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~g 71 (175)
T TIGR01493 1 AMVFDVYGTLVDVHGGVRACLAAIAPEGGAFSDLWRA--KQQEYSWRRS-----LMG--DRRAFPEDTVRALRYIADRLG 71 (175)
T ss_pred CeEEecCCcCcccHHHHHHHHHHhhhhhhHHHHHHHH--HHHHHHHHHH-----Hhc--CcCCHHHHHHHHHHHHHHHcC
Confidence 5899999999999987777777666553321000000 0011111110 011 122223333445666777788
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecccc
Q 039449 89 YDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLE 168 (253)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~ 168 (253)
.+.+.+.. ..+...+. .+.++||+.++|+ +++|+||++...++..++++|+.. +|+.++++++.
T Consensus 72 ~~~~~~~~-~~~~~~~~------~~~~~~g~~~~L~-------~~~i~Tn~~~~~~~~~l~~~~l~~--~fd~v~~~~~~ 135 (175)
T TIGR01493 72 LDAEPKYG-ERLRDAYK------NLPPWPDSAAALA-------RVAILSNASHWAFDQFAQQAGLPW--YFDRAFSVDTV 135 (175)
T ss_pred CCCCHHHH-HHHHHHHh------cCCCCCchHHHHH-------HHhhhhCCCHHHHHHHHHHCCCHH--HHhhhccHhhc
Confidence 76555422 22222221 2478999999998 378999999999999999999988 99998888888
Q ss_pred CccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhc
Q 039449 169 GVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSV 210 (253)
Q Consensus 169 ~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~ 210 (253)
+..||+|+.|..+++++| ++|++|+||||+. +|+.+|+++
T Consensus 136 ~~~KP~p~~f~~~~~~~~-~~p~~~l~vgD~~-~Di~~A~~~ 175 (175)
T TIGR01493 136 RAYKPDPVVYELVFDTVG-LPPDRVLMVAAHQ-WDLIGARKF 175 (175)
T ss_pred CCCCCCHHHHHHHHHHHC-CCHHHeEeEecCh-hhHHHHhcC
Confidence 999999999999999999 9999999999999 899999864
No 49
>PRK06769 hypothetical protein; Validated
Probab=99.90 E-value=6.7e-23 Score=147.89 Aligned_cols=130 Identities=17% Similarity=0.192 Sum_probs=99.7
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcch--------hhhhhhhcCCCCCcceeEee-eccccCccCCCHHHHHHHHHH
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRY--------QDVILPALGVNQGTEWDFGV-FSGLEGVEKPDPRIYEIALER 184 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~--------~~~~l~~~gl~~~~~f~~~~-~~~~~~~~kp~~~~~~~~~~~ 184 (253)
.++||+.++|++|+++|++++|+||..... ....++.+|+.. +|.... .++..+..||+|+.|..++++
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g~~~--~~~~~~~~~~~~~~~KP~p~~~~~~~~~ 105 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFGFDD--IYLCPHKHGDGCECRKPSTGMLLQAAEK 105 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCCcCE--EEECcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 678999999999999999999999987421 223356667665 443222 234456789999999999999
Q ss_pred hCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCC-CCCC----hhhhh-hcCCcccCCHHHHHHHHh
Q 039449 185 AGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRF-KTPD----AKEWR-KSGAIVLPDLVAVKEFLT 247 (253)
Q Consensus 185 ~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~-~~~~----~~~~~-~~~~~~i~~l~el~~~l~ 247 (253)
++ +++++|+||||++ +|+.+|+++|+.+|++.+. +... .+.+. ..++++++++.|+..+|.
T Consensus 106 l~-~~p~~~i~IGD~~-~Di~aA~~aGi~~i~v~~g~~~~~~~~~~~~l~~~~~~~~~~~~~el~~~l~ 172 (173)
T PRK06769 106 HG-LDLTQCAVIGDRW-TDIVAAAKVNATTILVRTGAGYDALHTYRDKWAHIEPNYIAENFEDAVNWIL 172 (173)
T ss_pred cC-CCHHHeEEEcCCH-HHHHHHHHCCCeEEEEecCCCchhhhhhhcccccCCCcchhhCHHHHHHHHh
Confidence 99 9999999999999 8999999999999999842 2211 12222 235589999999988764
No 50
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=99.89 E-value=2.8e-22 Score=145.48 Aligned_cols=123 Identities=19% Similarity=0.210 Sum_probs=95.4
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcc---------------hhhhhhhhcCCCCCcceeEeeec-----------cc
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYR---------------YQDVILPALGVNQGTEWDFGVFS-----------GL 167 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~---------------~~~~~l~~~gl~~~~~f~~~~~~-----------~~ 167 (253)
.++||+.++|++|+++|++++++||.+.. .....+...++. |+.++.+ +.
T Consensus 26 ~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~i~~~~~~~~~~~~~~~~ 101 (176)
T TIGR00213 26 EFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD----LDGIYYCPHHPEGVEEFRQV 101 (176)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC----ccEEEECCCCCcccccccCC
Confidence 78899999999999999999999999852 222345555543 3444433 23
Q ss_pred cCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeE-EEEcCCCCCChhhhhhcCCcccCCHHHHH
Q 039449 168 EGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHA-LLVDRFKTPDAKEWRKSGAIVLPDLVAVK 243 (253)
Q Consensus 168 ~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~-i~~~~~~~~~~~~~~~~~~~~i~~l~el~ 243 (253)
....||+|++|..++++++ +++++++||||+. +|+++|+++|+++ +++. ++..........+++++.++.||.
T Consensus 102 ~~~~KP~p~~~~~a~~~~~-~~~~~~v~VGDs~-~Di~aA~~aG~~~~i~v~-~g~~~~~~~~~~ad~~i~~~~el~ 175 (176)
T TIGR00213 102 CDCRKPKPGMLLQARKELH-IDMAQSYMVGDKL-EDMQAGVAAKVKTNVLVR-TGKPITPEAENIADWVLNSLADLP 175 (176)
T ss_pred CCCCCCCHHHHHHHHHHcC-cChhhEEEEcCCH-HHHHHHHHCCCcEEEEEe-cCCcccccccccCCEEeccHHHhh
Confidence 4467999999999999999 9999999999999 8999999999998 7888 454332222233678999999985
No 51
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=99.88 E-value=1.6e-21 Score=145.24 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=87.8
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccC----------CCHHHHHHHH
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEK----------PDPRIYEIAL 182 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~k----------p~~~~~~~~~ 182 (253)
..++||+.++|+.|+++|++++|+|++....++.+++.+|+.. +|...+.+.+.+..+ ++++.+..++
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~--~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~ 156 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDY--VYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLK 156 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCe--EEEEEEEEcCCCeEecceeeEEccccHHHHHHHHH
Confidence 3789999999999999999999999999999999999999987 776666655444333 3446888999
Q ss_pred HHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 183 ERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 183 ~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
++++ ++++++++|||+. +|+.+++.+|+++++-+
T Consensus 157 ~~~~-~~~~~~i~iGDs~-~D~~~a~~ag~~~a~~~ 190 (201)
T TIGR01491 157 RELN-PSLTETVAVGDSK-NDLPMFEVADISISLGD 190 (201)
T ss_pred HHhC-CCHHHEEEEcCCH-hHHHHHHhcCCeEEECC
Confidence 9999 9999999999999 99999999999887755
No 52
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=99.88 E-value=3.4e-21 Score=143.12 Aligned_cols=123 Identities=20% Similarity=0.201 Sum_probs=97.1
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhc---CCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCC
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPAL---GVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIA 189 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~---gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 189 (253)
..++||+.++|++|+++|++++|+||++...++..+++. ++.. +|+..+. ...+ .||+|+.|..++++++ ++
T Consensus 94 ~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~~--~f~~~fd-~~~g-~KP~p~~y~~i~~~lg-v~ 168 (220)
T TIGR01691 94 SHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLTP--YFSGYFD-TTVG-LKTEAQSYVKIAGQLG-SP 168 (220)
T ss_pred cCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchhh--hcceEEE-eCcc-cCCCHHHHHHHHHHhC-cC
Confidence 478999999999999999999999999998888777775 5655 6665442 2333 6999999999999999 99
Q ss_pred CCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHH
Q 039449 190 PEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVA 241 (253)
Q Consensus 190 ~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~e 241 (253)
+++++||||+. .|+.+|+++|+.++++.+++......-......++.|+++
T Consensus 169 p~e~lfVgDs~-~Di~AA~~AG~~ti~v~r~g~~~~~~~~~~~~~~~~~~~~ 219 (220)
T TIGR01691 169 PREILFLSDII-NELDAARKAGLHTGQLVRPGNDPVVDPSFPVYPQFPDLNA 219 (220)
T ss_pred hhHEEEEeCCH-HHHHHHHHcCCEEEEEECCCCCCCCcccCCCCCeecCccc
Confidence 99999999999 8999999999999999976633221110111446666654
No 53
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=99.87 E-value=4.1e-22 Score=140.27 Aligned_cols=104 Identities=25% Similarity=0.323 Sum_probs=85.1
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCc---------------chhhhhhhhcCCCCCcceeEeee-ccccCccCCCHHH
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEY---------------RYQDVILPALGVNQGTEWDFGVF-SGLEGVEKPDPRI 177 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~---------------~~~~~~l~~~gl~~~~~f~~~~~-~~~~~~~kp~~~~ 177 (253)
+++||+.++|++|+++|++++|+||... ..+...++.+|+....+|..... +...+..||+|++
T Consensus 27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~ 106 (147)
T TIGR01656 27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGL 106 (147)
T ss_pred EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHH
Confidence 6789999999999999999999999874 34566778888863111221111 2344567999999
Q ss_pred HHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 178 YEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
+..++++++ +++++|++|||+. .|+++|+++|+++|++++
T Consensus 107 ~~~~~~~~~-~~~~e~i~IGDs~-~Di~~A~~~Gi~~v~i~~ 146 (147)
T TIGR01656 107 ILEALKRLG-VDASRSLVVGDRL-RDLQAARNAGLAAVLLVD 146 (147)
T ss_pred HHHHHHHcC-CChHHEEEEcCCH-HHHHHHHHCCCCEEEecC
Confidence 999999999 9999999999998 899999999999999974
No 54
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=99.87 E-value=3.7e-21 Score=144.70 Aligned_cols=132 Identities=13% Similarity=0.068 Sum_probs=97.2
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcce--eEeeeccccCccCCCHHH----------HHH
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEW--DFGVFSGLEGVEKPDPRI----------YEI 180 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f--~~~~~~~~~~~~kp~~~~----------~~~ 180 (253)
..++||+.++|++|+++|++++|+|++....++.+++.+ +.....+ +..+..+.....||.|.. ...
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~ 151 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPS 151 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHH
Confidence 478999999999999999999999999999999999887 6431122 223334444455776643 357
Q ss_pred HHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhhh
Q 039449 181 ALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSEI 250 (253)
Q Consensus 181 ~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~~ 250 (253)
++++++ .++++|++|||+. +|+.+|+++|+..+ .+ ...........+.+.++++.|+...|++..
T Consensus 152 ~l~~~~-~~~~~~i~iGDs~-~Di~aa~~Ag~~~a--~~-~l~~~~~~~~~~~~~~~~f~ei~~~l~~~~ 216 (219)
T PRK09552 152 LIRKLS-DTNDFHIVIGDSI-TDLEAAKQADKVFA--RD-FLITKCEELGIPYTPFETFHDVQTELKHLL 216 (219)
T ss_pred HHHHhc-cCCCCEEEEeCCH-HHHHHHHHCCccee--HH-HHHHHHHHcCCCccccCCHHHHHHHHHHHh
Confidence 888999 9999999999999 99999999999444 31 101111112234578899999999988764
No 55
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=99.87 E-value=4e-21 Score=133.14 Aligned_cols=97 Identities=31% Similarity=0.421 Sum_probs=85.5
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCC--------cchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHh
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAE--------YRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERA 185 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~--------~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~ 185 (253)
.++|++.++|++|++.|++++++||+. ...+...++.+|+.. +..+++. +..||+++.|+.+++++
T Consensus 25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~--~~~KP~~~~~~~~~~~~ 98 (132)
T TIGR01662 25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPI----DVLYACP--HCRKPKPGMFLEALKRF 98 (132)
T ss_pred eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCE----EEEEECC--CCCCCChHHHHHHHHHc
Confidence 678999999999999999999999998 667888899998853 3333444 56799999999999999
Q ss_pred -CCCCCCceEEEcC-CcccchhhhhhcCCeEEEEc
Q 039449 186 -GNIAPEEALHIGD-SFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 186 -~~~~~~~~~~iGD-~~~~Di~~a~~~G~~~i~~~ 218 (253)
+ +++++++|||| +. +|+.+|+++|+.+|+++
T Consensus 99 ~~-~~~~~~v~IGD~~~-~Di~~A~~~Gi~~i~~~ 131 (132)
T TIGR01662 99 NE-IDPEESVYVGDQDL-TDLQAAKRAGLAFILVA 131 (132)
T ss_pred CC-CChhheEEEcCCCc-ccHHHHHHCCCeEEEee
Confidence 8 99999999999 68 89999999999999986
No 56
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=99.87 E-value=7.8e-21 Score=141.85 Aligned_cols=128 Identities=16% Similarity=0.193 Sum_probs=95.8
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecccc----CccCCCHHHHHHHHHHhCCC
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLE----GVEKPDPRIYEIALERAGNI 188 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~----~~~kp~~~~~~~~~~~~~~~ 188 (253)
..++||+.++|..|+++ ++++++|++....++..++.+|+.. +|...+..... +..+++|.....+++.++ .
T Consensus 67 ~~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~--~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~-~ 142 (205)
T PRK13582 67 LDPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPT--LFCHSLEVDEDGMITGYDLRQPDGKRQAVKALK-S 142 (205)
T ss_pred CCCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCch--hhcceEEECCCCeEECccccccchHHHHHHHHH-H
Confidence 37799999999999999 9999999999999999999999987 66554433221 222334444556677777 7
Q ss_pred CCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCC-cccCCHHHHHHHHhhhh
Q 039449 189 APEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGA-IVLPDLVAVKEFLTSEI 250 (253)
Q Consensus 189 ~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~-~~i~~l~el~~~l~~~~ 250 (253)
.++++++|||+. +|+.+++.+|+... +. +. .......+. .+++++.||..++.+..
T Consensus 143 ~~~~~v~iGDs~-~D~~~~~aa~~~v~-~~-~~---~~~~~~~~~~~~~~~~~el~~~l~~~~ 199 (205)
T PRK13582 143 LGYRVIAAGDSY-NDTTMLGEADAGIL-FR-PP---ANVIAEFPQFPAVHTYDELLAAIDKAS 199 (205)
T ss_pred hCCeEEEEeCCH-HHHHHHHhCCCCEE-EC-CC---HHHHHhCCcccccCCHHHHHHHHHHHH
Confidence 778999999999 99999999998654 33 11 122222344 48999999999988755
No 57
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=99.86 E-value=4.2e-20 Score=144.93 Aligned_cols=127 Identities=14% Similarity=0.135 Sum_probs=100.2
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEee-------ecc---ccCccCCCHHHHHHHH
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGV-------FSG---LEGVEKPDPRIYEIAL 182 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~-------~~~---~~~~~kp~~~~~~~~~ 182 (253)
.+++||+.++++.|++.|++++|+|++....++...+.+|++. .+...+ +.. .....+||++.++.++
T Consensus 180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~--~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la 257 (322)
T PRK11133 180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA--AVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLA 257 (322)
T ss_pred CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe--EEEeEEEEECCEEEeEecCccCCcccHHHHHHHHH
Confidence 4789999999999999999999999999988888899999875 333211 111 2224589999999999
Q ss_pred HHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCccc--CCHHHHHHHHhhh
Q 039449 183 ERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVL--PDLVAVKEFLTSE 249 (253)
Q Consensus 183 ~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i--~~l~el~~~l~~~ 249 (253)
+++| +++++|++|||+. ||+.|++.+|+..++ +. .+.+.+..++++ .+++.++.++...
T Consensus 258 ~~lg-i~~~qtIaVGDg~-NDl~m~~~AGlgiA~-nA-----kp~Vk~~Ad~~i~~~~l~~~l~~~~~~ 318 (322)
T PRK11133 258 QEYE-IPLAQTVAIGDGA-NDLPMIKAAGLGIAY-HA-----KPKVNEQAQVTIRHADLMGVLCILSGS 318 (322)
T ss_pred HHcC-CChhhEEEEECCH-HHHHHHHHCCCeEEe-CC-----CHHHHhhCCEEecCcCHHHHHHHhccc
Confidence 9999 9999999999999 999999999999887 41 233344455444 4788888777543
No 58
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.85 E-value=4.8e-20 Score=131.07 Aligned_cols=182 Identities=20% Similarity=0.269 Sum_probs=134.9
Q ss_pred cCceEEEEecCCceeccCCCHHHHHHHH-----HHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHH
Q 039449 5 SRLRCITVDVTGTLLAYKGELGDYYCMA-----AKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTC 79 (253)
Q Consensus 5 ~~~k~i~fD~DGTL~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (253)
.++++++||+|+||++....+..+.+.- ..++|+...............|.-
T Consensus 13 ~~~~~l~FDiDdtLYp~St~i~~~~~~nI~~f~~eklgi~~e~a~~L~~~~yk~YG~----------------------- 69 (244)
T KOG3109|consen 13 PNYKCLFFDIDDTLYPLSTGIQLMMRNNIQEFFVEKLGISEEEAEELRESLYKEYGL----------------------- 69 (244)
T ss_pred ccceEEEEecccccccCchhHHHHHHHHHHHHHHHHhCCChhhhHHHHHHHHHHHhH-----------------------
Confidence 4689999999999999888777776632 345688765554444333222211
Q ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcce
Q 039449 80 VRDSFVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEW 159 (253)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f 159 (253)
.-+.+...+...+.++..+ +.........++|.+..+.+|-.|+.++ .+++||+.+..+.+.++.+|+++ .|
T Consensus 70 t~aGL~~~~~~~d~deY~~----~V~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~k~HA~r~Lk~LGieD--cF 141 (244)
T KOG3109|consen 70 TMAGLKAVGYIFDADEYHR----FVHGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAYKVHAIRILKKLGIED--CF 141 (244)
T ss_pred HHHHHHHhcccCCHHHHHH----HhhccCcHhhcCCCHHHHHHHHhCcccc--EEEecCCcHHHHHHHHHHhChHH--hc
Confidence 1122333333334444433 3333333233577778889998888774 78999999999999999999999 99
Q ss_pred eEeeeccccCc------cCCCHHHHHHHHHHhCCCC-CCceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 160 DFGVFSGLEGV------EKPDPRIYEIALERAGNIA-PEEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 160 ~~~~~~~~~~~------~kp~~~~~~~~~~~~~~~~-~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
+.++.++.... -||.+++|+.+++..| ++ |++++||+||. ++|..|++.|++++++..
T Consensus 142 egii~~e~~np~~~~~vcKP~~~afE~a~k~ag-i~~p~~t~FfDDS~-~NI~~ak~vGl~tvlv~~ 206 (244)
T KOG3109|consen 142 EGIICFETLNPIEKTVVCKPSEEAFEKAMKVAG-IDSPRNTYFFDDSE-RNIQTAKEVGLKTVLVGR 206 (244)
T ss_pred cceeEeeccCCCCCceeecCCHHHHHHHHHHhC-CCCcCceEEEcCch-hhHHHHHhccceeEEEEe
Confidence 99888776652 2999999999999999 87 99999999999 899999999999999984
No 59
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=99.85 E-value=9.7e-21 Score=134.33 Aligned_cols=101 Identities=19% Similarity=0.222 Sum_probs=87.8
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCC---------------cchhhhhhhhcCCCCCcceeEeeec-----cccCccC
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAE---------------YRYQDVILPALGVNQGTEWDFGVFS-----GLEGVEK 172 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~---------------~~~~~~~l~~~gl~~~~~f~~~~~~-----~~~~~~k 172 (253)
+.++||+.++|++|+++|++++|+||.+ ...+...++.+|+. |+.++++ ++.+..|
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~----fd~ii~~~~~~~~~~~~~K 103 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII----FDDVLICPHFPDDNCDCRK 103 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc----eeEEEECCCCCCCCCCCCC
Confidence 3789999999999999999999999974 23456678888884 5655543 6677889
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 173 PDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
|+++.+..++++++ +++++++||||+. +|+.+|+++|++++++.+
T Consensus 104 P~~~~~~~~~~~~~-~~~~e~l~IGD~~-~Di~~A~~aGi~~i~~~~ 148 (161)
T TIGR01261 104 PKIKLLEPYLKKNL-IDKARSYVIGDRE-TDMQLAENLGIRGIQYDE 148 (161)
T ss_pred CCHHHHHHHHHHcC-CCHHHeEEEeCCH-HHHHHHHHCCCeEEEECh
Confidence 99999999999999 9999999999999 899999999999999984
No 60
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=99.84 E-value=1.8e-21 Score=138.69 Aligned_cols=103 Identities=13% Similarity=0.083 Sum_probs=92.8
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCC-CcchhhhhhhhcCCC---------CCcceeEeeeccccCccCCCHHHHHHHH
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNA-EYRYQDVILPALGVN---------QGTEWDFGVFSGLEGVEKPDPRIYEIAL 182 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~-~~~~~~~~l~~~gl~---------~~~~f~~~~~~~~~~~~kp~~~~~~~~~ 182 (253)
..++||+.++|+.|+++|++++++||+ ....++..++.+++. . +|+.+++++.....||.+.+++.+.
T Consensus 44 ~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~--~Fd~iv~~~~~~~~kp~~~i~~~~~ 121 (174)
T TIGR01685 44 VTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHS--LFDDRIEIYKPNKAKQLEMILQKVN 121 (174)
T ss_pred EEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHH--hceeeeeccCCchHHHHHHHHHHhh
Confidence 488999999999999999999999998 777888899999997 7 8999888887666678788888887
Q ss_pred HHh--CCCCCCceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 183 ERA--GNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 183 ~~~--~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
+.+ + +++++|+||||++ .|+.+|+++|+.++++.+
T Consensus 122 ~~~~~g-l~p~e~l~VgDs~-~di~aA~~aGi~~i~v~~ 158 (174)
T TIGR01685 122 KVDPSV-LKPAQILFFDDRT-DNVREVWGYGVTSCYCPS 158 (174)
T ss_pred hcccCC-CCHHHeEEEcChh-HhHHHHHHhCCEEEEcCC
Confidence 777 8 9999999999999 899999999999999973
No 61
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=99.83 E-value=1.5e-19 Score=135.36 Aligned_cols=95 Identities=13% Similarity=0.115 Sum_probs=80.4
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCC----CcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNA----EYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIA 189 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~----~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 189 (253)
.+++++.++|++++++|++++++||. ....++.+++.+|+.. +|+.++.++.....||++. .++++++ +
T Consensus 114 ~p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~--~f~~i~~~d~~~~~Kp~~~---~~l~~~~-i- 186 (237)
T TIGR01672 114 IPKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPA--MNPVIFAGDKPGQYQYTKT---QWIQDKN-I- 186 (237)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCch--heeEEECCCCCCCCCCCHH---HHHHhCC-C-
Confidence 56677999999999999999999998 4446778888999998 8888777777666788765 3566777 5
Q ss_pred CCceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 190 PEEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 190 ~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
++||||+. +|+.+|+++|+.+|.+.+
T Consensus 187 ---~i~vGDs~-~DI~aAk~AGi~~I~V~~ 212 (237)
T TIGR01672 187 ---RIHYGDSD-NDITAAKEAGARGIRILR 212 (237)
T ss_pred ---eEEEeCCH-HHHHHHHHCCCCEEEEEe
Confidence 79999999 999999999999999984
No 62
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=99.83 E-value=1.1e-19 Score=139.43 Aligned_cols=128 Identities=20% Similarity=0.174 Sum_probs=100.8
Q ss_pred CCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccC---ccCCCHHHHHHHHHHhCCCCCCc
Q 039449 116 FPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEG---VEKPDPRIYEIALERAGNIAPEE 192 (253)
Q Consensus 116 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~---~~kp~~~~~~~~~~~~~~~~~~~ 192 (253)
++++.+.++.|++.+++++++||.+.......+..+|+.. +|+.+..+.... ..||+|.++..++++++ +++++
T Consensus 122 y~~l~~a~~~L~~~~~~~~iatn~~~~~~~~~~~~~g~g~--~~~~i~~~~~~~~~~~gKP~p~~~~~~~~~~~-~~~~~ 198 (257)
T TIGR01458 122 YQILNQAFRLLLDGAKPLLIAIGKGRYYKRKDGLALDVGP--FVTALEYATDTKATVVGKPSKTFFLEALRATG-CEPEE 198 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEEeCCCCCCcCCCCCCCCchH--HHHHHHHHhCCCceeecCCCHHHHHHHHHHhC-CChhh
Confidence 4567788899998889999999999887776777777766 776555443332 26999999999999999 99999
Q ss_pred eEEEcCCcccchhhhhhcCCeEEEEcCCCCCChh---hhhhcCCcccCCHHHHHHHHh
Q 039449 193 ALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAK---EWRKSGAIVLPDLVAVKEFLT 247 (253)
Q Consensus 193 ~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~---~~~~~~~~~i~~l~el~~~l~ 247 (253)
++||||+..+|+.+|+++|++++++.+ +..... .....++++++++.|+.+++.
T Consensus 199 ~~~vGD~~~~Di~~a~~~G~~~i~v~~-G~~~~~~~~~~~~~pd~~~~sl~el~~~l~ 255 (257)
T TIGR01458 199 AVMIGDDCRDDVGGAQDCGMRGIQVRT-GKYRPSDEEKINVPPDLTCDSLPHAVDLIL 255 (257)
T ss_pred EEEECCCcHHHHHHHHHcCCeEEEECC-CCCChHHhcccCCCCCEEECCHHHHHHHHh
Confidence 999999965899999999999999984 432211 122345689999999988764
No 63
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=99.81 E-value=3.6e-18 Score=125.99 Aligned_cols=189 Identities=16% Similarity=0.175 Sum_probs=122.9
Q ss_pred eEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHHc
Q 039449 8 RCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVRA 87 (253)
Q Consensus 8 k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (253)
.+++||+||||++. .|.....+.|..... .. ..+......+.+..+. .+...
T Consensus 2 ~la~FDlD~TLi~~------~w~~~~~~~g~~~~~---~~------------------~~~~~~~~~~~~~r~~-ll~~~ 53 (203)
T TIGR02137 2 EIACLDLEGVLVPE------IWIAFAEKTGIDALK---AT------------------TRDIPDYDVLMKQRLR-ILDEH 53 (203)
T ss_pred eEEEEeCCcccHHH------HHHHHHHHcCCcHHH---HH------------------hcCCcCHHHHHHHHHH-HHHHC
Confidence 56999999999973 577778888853211 10 0111122222221111 12222
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccc
Q 039449 88 GYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGL 167 (253)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~ 167 (253)
|+ +.+.+...+.. ++++||+.++++.+++.+ +++|+|++....++.+++.+|++. +|...+....
T Consensus 54 g~--~~~~i~~~~~~----------i~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~--~~an~l~~~~ 118 (203)
T TIGR02137 54 GL--KLGDIQEVIAT----------LKPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPT--LLCHKLEIDD 118 (203)
T ss_pred CC--CHHHHHHHHHh----------CCCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCch--hhceeeEEec
Confidence 43 34444333321 378999999999999975 999999999999999999999987 6653222211
Q ss_pred ----cC---ccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCC-cccCCH
Q 039449 168 ----EG---VEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGA-IVLPDL 239 (253)
Q Consensus 168 ----~~---~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~-~~i~~l 239 (253)
.+ ..++.+......++..+ . ++++|||+. ||+.+++.+|.+.++-.. +.-....++ .++.++
T Consensus 119 ~g~~tG~~~~~~~~K~~~l~~l~~~~-~---~~v~vGDs~-nDl~ml~~Ag~~ia~~ak-----~~~~~~~~~~~~~~~~ 188 (203)
T TIGR02137 119 SDRVVGYQLRQKDPKRQSVIAFKSLY-Y---RVIAAGDSY-NDTTMLSEAHAGILFHAP-----ENVIREFPQFPAVHTY 188 (203)
T ss_pred CCeeECeeecCcchHHHHHHHHHhhC-C---CEEEEeCCH-HHHHHHHhCCCCEEecCC-----HHHHHhCCCCCcccCH
Confidence 11 23454554444455555 3 799999999 999999999999988663 111122333 689999
Q ss_pred HHHHHHHhhh
Q 039449 240 VAVKEFLTSE 249 (253)
Q Consensus 240 ~el~~~l~~~ 249 (253)
+||.+.+...
T Consensus 189 ~~~~~~~~~~ 198 (203)
T TIGR02137 189 EDLKREFLKA 198 (203)
T ss_pred HHHHHHHHHH
Confidence 9999988765
No 64
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=99.81 E-value=1.4e-19 Score=140.90 Aligned_cols=123 Identities=20% Similarity=0.180 Sum_probs=92.2
Q ss_pred cCCChHHHHHHHHHcCCEEEEEeCCCcchh-hhhhhhcCCCCCcceeEeee---ccccCccCCCHHHHHHHHHHhCCCCC
Q 039449 115 VFPDSQPFLRWAREKGLIVGIISNAEYRYQ-DVILPALGVNQGTEWDFGVF---SGLEGVEKPDPRIYEIALERAGNIAP 190 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~-~~~l~~~gl~~~~~f~~~~~---~~~~~~~kp~~~~~~~~~~~~~~~~~ 190 (253)
-++++.++++.|+++|. ++++||.+.... ...+...|+.. +|+.+.. ......+||+|.++..++++++ +++
T Consensus 144 ~y~~i~~~l~~L~~~g~-~~i~Tn~d~~~~~~~~~~~~~~g~--~~~~i~~~~g~~~~~~gKP~p~~~~~~~~~~~-~~~ 219 (279)
T TIGR01452 144 SYAKLREACAHLREPGC-LFVATNRDPWHPLSDGSRTPGTGS--LVAAIETASGRQPLVVGKPSPYMFECITENFS-IDP 219 (279)
T ss_pred CHHHHHHHHHHHhcCCC-EEEEeCCCCCCCCcCCCcccChHH--HHHHHHHHhCCceeccCCCCHHHHHHHHHHhC-CCh
Confidence 36788999999998887 688999887543 22233445544 5554332 2233457999999999999999 999
Q ss_pred CceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhh---------cCCcccCCHHHH
Q 039449 191 EEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRK---------SGAIVLPDLVAV 242 (253)
Q Consensus 191 ~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~---------~~~~~i~~l~el 242 (253)
++++||||++.+||.+|+++|+++++|. +|....+.+.. .++++++++.|+
T Consensus 220 ~~~lmIGD~~~tDI~~A~~aGi~si~V~-~G~~~~~~l~~~~~~~~~~~~Pd~~~~~l~~l 279 (279)
T TIGR01452 220 ARTLMVGDRLETDILFGHRCGMTTVLVL-SGVSRLEEAQEYLAAGQHDLVPDYVVESLADL 279 (279)
T ss_pred hhEEEECCChHHHHHHHHHcCCcEEEEC-CCCCCHHHHHhhhcccccCCCCCEEecccccC
Confidence 9999999995489999999999999998 56555555442 356888888764
No 65
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=99.80 E-value=2.1e-18 Score=129.30 Aligned_cols=131 Identities=15% Similarity=0.130 Sum_probs=95.3
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcce---eEeeeccccCccCCCHHHH----------H
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEW---DFGVFSGLEGVEKPDPRIY----------E 179 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f---~~~~~~~~~~~~kp~~~~~----------~ 179 (253)
..++||+.++++.|+++|++++|+|++....++.+++.++... .+ ...+..+.....+|.+..+ .
T Consensus 69 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~--~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~~K~ 146 (214)
T TIGR03333 69 AEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKD--RIYCNEADFSNEYIHIDWPHPCDGTCQNQCGCCKP 146 (214)
T ss_pred CcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcc--cEEeceeEeeCCeeEEeCCCCCccccccCCCCCHH
Confidence 3789999999999999999999999999998998888875433 33 1222233334457766554 4
Q ss_pred HHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhhh
Q 039449 180 IALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSEI 250 (253)
Q Consensus 180 ~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~~ 250 (253)
.++++++ ..++++++|||+. +|+.+|+.+|+ +++.+... ........+...++++.|+.+.|++..
T Consensus 147 ~~l~~~~-~~~~~~i~iGDg~-~D~~~a~~Ad~--~~ar~~l~-~~~~~~~~~~~~~~~f~di~~~l~~~~ 212 (214)
T TIGR03333 147 SLIRKLS-EPNDYHIVIGDSV-TDVEAAKQSDL--CFARDYLL-NECEELGLNHAPFQDFYDVRKELENVK 212 (214)
T ss_pred HHHHHHh-hcCCcEEEEeCCH-HHHHHHHhCCe--eEehHHHH-HHHHHcCCCccCcCCHHHHHHHHHHHh
Confidence 6788888 7889999999999 99999999998 44442111 111122234577899999999987643
No 66
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=99.80 E-value=8.2e-19 Score=125.34 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=83.1
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcc------------hhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHH
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYR------------YQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIA 181 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~------------~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~ 181 (253)
.++||+.++|+.|+++|++++|+||.+.. .++..++.+|+. . +.++.++.....||+|+.+..+
T Consensus 42 ~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~---~-~~ii~~~~~~~~KP~p~~~~~~ 117 (166)
T TIGR01664 42 FLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP---I-QVLAATHAGLYRKPMTGMWEYL 117 (166)
T ss_pred EecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC---E-EEEEecCCCCCCCCccHHHHHH
Confidence 36899999999999999999999998764 356778899984 2 4555555555679999999999
Q ss_pred HHHhC-CCCCCceEEEcCCc-------ccchhhhhhcCCeEEEE
Q 039449 182 LERAG-NIAPEEALHIGDSF-------RKDYVPAKSVGMHALLV 217 (253)
Q Consensus 182 ~~~~~-~~~~~~~~~iGD~~-------~~Di~~a~~~G~~~i~~ 217 (253)
+++++ .+++++++||||+. .+|+++|+++|+++++-
T Consensus 118 ~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~aGi~~~~~ 161 (166)
T TIGR01664 118 QSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKNLGLEFKYP 161 (166)
T ss_pred HHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHHCCCCcCCh
Confidence 99996 27899999999985 25999999999998763
No 67
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=99.78 E-value=1.1e-18 Score=121.88 Aligned_cols=101 Identities=30% Similarity=0.430 Sum_probs=90.6
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCcc----------------CCCHH
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVE----------------KPDPR 176 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~----------------kp~~~ 176 (253)
..+++++.+++++|+++|++++++|++....++..++..|+.. +++.++.+...... ||++.
T Consensus 23 ~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (139)
T cd01427 23 LELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDD--YFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPD 100 (139)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCch--hhhheeccchhhhhcccccccccccccccCCCCHH
Confidence 4788999999999999999999999999999999999999876 77776666555444 99999
Q ss_pred HHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEE
Q 039449 177 IYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLV 217 (253)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~ 217 (253)
.+..+++.++ .+++++++|||+. +|+.+++++|++++++
T Consensus 101 ~~~~~~~~~~-~~~~~~~~igD~~-~d~~~~~~~g~~~i~v 139 (139)
T cd01427 101 KLLAALKLLG-VDPEEVLMVGDSL-NDIEMAKAAGGLGVAV 139 (139)
T ss_pred HHHHHHHHcC-CChhhEEEeCCCH-HHHHHHHHcCCceeeC
Confidence 9999999999 9999999999999 9999999999999874
No 68
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=99.78 E-value=2.3e-18 Score=123.99 Aligned_cols=94 Identities=20% Similarity=0.298 Sum_probs=81.2
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCC-cchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCc
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAE-YRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEE 192 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~-~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 192 (253)
.++|++.++|++|++.|++++++||+. ...+..+++.+|+.. + .+..||+++++..++++++ +++++
T Consensus 43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~--~---------~~~~KP~p~~~~~~l~~~~-~~~~~ 110 (170)
T TIGR01668 43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPV--L---------PHAVKPPGCAFRRAHPEMG-LTSEQ 110 (170)
T ss_pred CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEE--E---------cCCCCCChHHHHHHHHHcC-CCHHH
Confidence 677899999999999999999999998 566666667777643 1 1346999999999999999 99999
Q ss_pred eEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 193 ALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 193 ~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
++||||+..+|+.+|+++|+.+|++++
T Consensus 111 ~l~IGDs~~~Di~aA~~aGi~~i~v~~ 137 (170)
T TIGR01668 111 VAVVGDRLFTDVMGGNRNGSYTILVEP 137 (170)
T ss_pred EEEECCcchHHHHHHHHcCCeEEEEcc
Confidence 999999983599999999999999984
No 69
>PLN02645 phosphoglycolate phosphatase
Probab=99.78 E-value=6.1e-18 Score=133.37 Aligned_cols=121 Identities=15% Similarity=0.048 Sum_probs=88.7
Q ss_pred HHHHHHcCCEEEEEeCCCcch-hhhhhhhcCCCCCcceeEeeeccccC---ccCCCHHHHHHHHHHhCCCCCCceEEEcC
Q 039449 123 LRWAREKGLIVGIISNAEYRY-QDVILPALGVNQGTEWDFGVFSGLEG---VEKPDPRIYEIALERAGNIAPEEALHIGD 198 (253)
Q Consensus 123 l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~gl~~~~~f~~~~~~~~~~---~~kp~~~~~~~~~~~~~~~~~~~~~~iGD 198 (253)
...++.++-..+++||.+... ....+...|... +|+.+..+.... .+||+|.++..++++++ +++++++||||
T Consensus 179 ~~~l~~~~g~~~i~tn~d~~~~~~~~~~~~g~g~--~~~~i~~~~~~~~~~~gKP~p~~~~~a~~~~~-~~~~~~~~VGD 255 (311)
T PLN02645 179 TLCIRENPGCLFIATNRDAVTHLTDAQEWAGAGS--MVGAIKGSTEREPLVVGKPSTFMMDYLANKFG-IEKSQICMVGD 255 (311)
T ss_pred HHHHhcCCCCEEEEeCCCCCCCCCCCCCccchHH--HHHHHHHHhCCCcccCCCChHHHHHHHHHHcC-CCcccEEEEcC
Confidence 444544222467889888754 333445556655 666655544432 25999999999999999 99999999999
Q ss_pred CcccchhhhhhcCCeEEEEcCCCCCChhhhhh-----cCCcccCCHHHHHHHHh
Q 039449 199 SFRKDYVPAKSVGMHALLVDRFKTPDAKEWRK-----SGAIVLPDLVAVKEFLT 247 (253)
Q Consensus 199 ~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~-----~~~~~i~~l~el~~~l~ 247 (253)
++.+|+.+|+++|+++++|. +|....+.+.. .++++++++.+|.+++.
T Consensus 256 ~~~~Di~~A~~aG~~~ilV~-~G~~~~~~~~~~~~~~~pd~~~~~~~~l~~~~~ 308 (311)
T PLN02645 256 RLDTDILFGQNGGCKTLLVL-SGVTSESMLLSPENKIQPDFYTSKISDFLTLKA 308 (311)
T ss_pred CcHHHHHHHHHcCCCEEEEc-CCCCCHHHHHhccCCCCCCEEECCHHHHHHHhh
Confidence 97689999999999999998 45555554432 35689999999988664
No 70
>PRK10444 UMP phosphatase; Provisional
Probab=99.77 E-value=5.8e-18 Score=128.77 Aligned_cols=71 Identities=24% Similarity=0.405 Sum_probs=61.6
Q ss_pred ccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhh---hcCCcccCCHHHH
Q 039449 170 VEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWR---KSGAIVLPDLVAV 242 (253)
Q Consensus 170 ~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~---~~~~~~i~~l~el 242 (253)
.+||+|+++..++++++ +++++++||||+..+|+.+|+++|++++++. +|....+.+. ..++++++|+.++
T Consensus 172 ~gKP~~~~~~~~~~~~~-~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~-~G~~~~~~l~~~~~~pd~~~~sl~el 245 (248)
T PRK10444 172 VGKPSPWIIRAALNKMQ-AHSEETVIVGDNLRTDILAGFQAGLETILVL-SGVSTLDDIDSMPFRPSWIYPSVADI 245 (248)
T ss_pred cCCCCHHHHHHHHHHcC-CCcccEEEECCCcHHHHHHHHHcCCCEEEEC-CCCCCHHHHhcCCCCCCEEECCHHHh
Confidence 46999999999999999 9999999999997689999999999999998 5666555554 3466899999987
No 71
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=99.77 E-value=1.9e-17 Score=123.24 Aligned_cols=120 Identities=14% Similarity=0.192 Sum_probs=96.4
Q ss_pred CChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeec-cc--
Q 039449 91 YDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFS-GL-- 167 (253)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~-~~-- 167 (253)
.+.+++....+.++..... ..++|++.++++.++++|++++|+|++....++.+++.+|++. +|...+.. .+
T Consensus 67 ~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~--~~~~~l~~~~~g~ 141 (202)
T TIGR01490 67 LLEEDVRAIVEEFVNQKIE---SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN--AIGTRLEESEDGI 141 (202)
T ss_pred CCHHHHHHHHHHHHHHHHH---HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc--eEecceEEcCCCE
Confidence 4677777777777765442 2678999999999999999999999999999999999999987 65542221 11
Q ss_pred --------cCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEE
Q 039449 168 --------EGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLV 217 (253)
Q Consensus 168 --------~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~ 217 (253)
...+++|...+++++++.+ ++++++++||||. +|+.+++.+|.+++.-
T Consensus 142 ~~g~~~~~~~~g~~K~~~l~~~~~~~~-~~~~~~~~~gDs~-~D~~~~~~a~~~~~v~ 197 (202)
T TIGR01490 142 YTGNIDGNNCKGEGKVHALAELLAEEQ-IDLKDSYAYGDSI-SDLPLLSLVGHPYVVN 197 (202)
T ss_pred EeCCccCCCCCChHHHHHHHHHHHHcC-CCHHHcEeeeCCc-ccHHHHHhCCCcEEeC
Confidence 1223567788999999999 9999999999999 9999999999887553
No 72
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=99.76 E-value=7.5e-18 Score=115.19 Aligned_cols=91 Identities=27% Similarity=0.433 Sum_probs=81.6
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEE
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHI 196 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~i 196 (253)
|.+.+.+.++++.|+++.|+||+....+....+.+|++- .....||.+.++.+++++++ +++++|+||
T Consensus 49 pe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~f-----------i~~A~KP~~~~fr~Al~~m~-l~~~~vvmV 116 (175)
T COG2179 49 PELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPF-----------IYRAKKPFGRAFRRALKEMN-LPPEEVVMV 116 (175)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCce-----------eecccCccHHHHHHHHHHcC-CChhHEEEE
Confidence 455677888999999999999999999999999998873 12456999999999999999 999999999
Q ss_pred cCCcccchhhhhhcCCeEEEEcC
Q 039449 197 GDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 197 GD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
||+..+|+.+++++|+.+|+|.+
T Consensus 117 GDqL~TDVlggnr~G~~tIlV~P 139 (175)
T COG2179 117 GDQLFTDVLGGNRAGMRTILVEP 139 (175)
T ss_pred cchhhhhhhcccccCcEEEEEEE
Confidence 99999999999999999999983
No 73
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=99.75 E-value=7.9e-17 Score=118.64 Aligned_cols=94 Identities=18% Similarity=0.203 Sum_probs=75.2
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecccc--------------------CccC
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLE--------------------GVEK 172 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~--------------------~~~k 172 (253)
.+++|++.++++.|+++|++++++||+....++..++.+|+.. +|+.++.+... ..+.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~--~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 148 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKD--VFIEIYSNPASFDNDGRHIVWPHHCHGCCSCPCGC 148 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChh--heeEEeccCceECCCCcEEEecCCCCccCcCCCCC
Confidence 3788999999999999999999999999999999999999988 88887754321 1123
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCe
Q 039449 173 PDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMH 213 (253)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~ 213 (253)
+|++.++.+.+.. ++++++|||+. +|+.+|+++++-
T Consensus 149 ~K~~~~~~~~~~~----~~~~i~iGD~~-~D~~aa~~~d~~ 184 (188)
T TIGR01489 149 CKGKVIHKLSEPK----YQHIIYIGDGV-TDVCPAKLSDVV 184 (188)
T ss_pred CHHHHHHHHHhhc----CceEEEECCCc-chhchHhcCCcc
Confidence 4566666554432 67999999999 999999998654
No 74
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=99.75 E-value=1.2e-17 Score=118.97 Aligned_cols=99 Identities=20% Similarity=0.170 Sum_probs=83.4
Q ss_pred HHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCc
Q 039449 121 PFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSF 200 (253)
Q Consensus 121 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~ 200 (253)
..++.|+++|++++|+||.....++..++.+|+.. +|+. .||+|+.+..++++++ ++++++++|||+.
T Consensus 41 ~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~--~f~~---------~kpkp~~~~~~~~~l~-~~~~ev~~iGD~~ 108 (169)
T TIGR02726 41 MGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKR--FHEG---------IKKKTEPYAQMLEEMN-ISDAEVCYVGDDL 108 (169)
T ss_pred HHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcE--EEec---------CCCCHHHHHHHHHHcC-cCHHHEEEECCCH
Confidence 44667888999999999999999999999999987 6653 2799999999999999 9999999999999
Q ss_pred ccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccC
Q 039449 201 RKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLP 237 (253)
Q Consensus 201 ~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~ 237 (253)
||+.+++.+|++.++-+. .+.+.....+++.
T Consensus 109 -nDi~~~~~ag~~~am~nA-----~~~lk~~A~~I~~ 139 (169)
T TIGR02726 109 -VDLSMMKRVGLAVAVGDA-----VADVKEAAAYVTT 139 (169)
T ss_pred -HHHHHHHHCCCeEECcCc-----hHHHHHhCCEEcC
Confidence 999999999999998763 2344455555544
No 75
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.75 E-value=8.2e-17 Score=119.29 Aligned_cols=174 Identities=16% Similarity=0.132 Sum_probs=119.9
Q ss_pred cCceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHH
Q 039449 5 SRLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSF 84 (253)
Q Consensus 5 ~~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (253)
++.++++||+||||++ ...+..+.+..|..... ..+...+. .+.+...+. ++...
T Consensus 3 ~~~~L~vFD~D~TLi~-----~~~~~~~~~~~g~~~~v-~~~t~~~~---------------~~~~~~~~~----~~~~v 57 (212)
T COG0560 3 RMKKLAVFDLDGTLIN-----AELIDELARGAGVGEEV-LAITERAM---------------RGELDFEES----LRLRV 57 (212)
T ss_pred CccceEEEecccchhh-----HHHHHHHHHHhCCHHHH-HHHHHHHh---------------cccccHHHH----HHHHH
Confidence 4578999999999999 34455555566653211 11111110 001111111 21111
Q ss_pred HHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeee
Q 039449 85 VRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVF 164 (253)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~ 164 (253)
..+ ...+.+.+.....++ .+++||+.++++.+++.|++++|+|++....++.+.+.+|++. .+...+.
T Consensus 58 ~~l-~g~~~~~v~~~~~~~---------~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~--~~an~l~ 125 (212)
T COG0560 58 ALL-KGLPVEVLEEVREEF---------LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY--VVANELE 125 (212)
T ss_pred HHh-CCCCHHHHHHHHHhc---------CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch--heeeEEE
Confidence 111 122444444444443 3889999999999999999999999999999999999999998 6666555
Q ss_pred ccc---cC-------ccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEE
Q 039449 165 SGL---EG-------VEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLV 217 (253)
Q Consensus 165 ~~~---~~-------~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~ 217 (253)
..+ .| ..+-|...+.++++.+| +++++++++||+. ||+.|.+.+|.+.++=
T Consensus 126 ~~dG~ltG~v~g~~~~~~~K~~~l~~~~~~~g-~~~~~~~a~gDs~-nDlpml~~ag~~ia~n 186 (212)
T COG0560 126 IDDGKLTGRVVGPICDGEGKAKALRELAAELG-IPLEETVAYGDSA-NDLPMLEAAGLPIAVN 186 (212)
T ss_pred EeCCEEeceeeeeecCcchHHHHHHHHHHHcC-CCHHHeEEEcCch-hhHHHHHhCCCCeEeC
Confidence 544 11 12457889999999999 9999999999999 9999999999987663
No 76
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=99.74 E-value=3.2e-17 Score=129.39 Aligned_cols=101 Identities=20% Similarity=0.261 Sum_probs=84.7
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCC---------------cchhhhhhhhcCCCCCcceeEeeec-----cccCccC
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAE---------------YRYQDVILPALGVNQGTEWDFGVFS-----GLEGVEK 172 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~---------------~~~~~~~l~~~gl~~~~~f~~~~~~-----~~~~~~k 172 (253)
..++||+.++|.+|+++|++++|+||.+ ...+..+++.+|+. |+.++++ +..+..|
T Consensus 29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl~----fd~i~i~~~~~sd~~~~rK 104 (354)
T PRK05446 29 LAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGIK----FDEVLICPHFPEDNCSCRK 104 (354)
T ss_pred ceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCCc----eeeEEEeCCcCcccCCCCC
Confidence 3889999999999999999999999952 22344566777773 4555443 3456779
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 173 PDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
|+|.++..++++++ +++++++||||+. +|+.+|+++|+++|++++
T Consensus 105 P~p~~l~~a~~~l~-v~~~~svmIGDs~-sDi~aAk~aGi~~I~v~~ 149 (354)
T PRK05446 105 PKTGLVEEYLAEGA-IDLANSYVIGDRE-TDVQLAENMGIKGIRYAR 149 (354)
T ss_pred CCHHHHHHHHHHcC-CCcccEEEEcCCH-HHHHHHHHCCCeEEEEEC
Confidence 99999999999999 9999999999999 999999999999999984
No 77
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=99.74 E-value=5.5e-18 Score=119.97 Aligned_cols=110 Identities=21% Similarity=0.235 Sum_probs=86.6
Q ss_pred HHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcc
Q 039449 122 FLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFR 201 (253)
Q Consensus 122 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~ 201 (253)
.+++|+++|++++|+||.....+...++.+|+.. +|+. .+|+++.+..++++++ +++++|++|||+.
T Consensus 36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~--~~~~---------~~~k~~~~~~~~~~~~-~~~~~~~~vGDs~- 102 (154)
T TIGR01670 36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITH--LYQG---------QSNKLIAFSDILEKLA-LAPENVAYIGDDL- 102 (154)
T ss_pred HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCE--EEec---------ccchHHHHHHHHHHcC-CCHHHEEEECCCH-
Confidence 7899999999999999999999999999999987 5542 3788999999999999 9999999999999
Q ss_pred cchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHH---HHHHHhhh
Q 039449 202 KDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVA---VKEFLTSE 249 (253)
Q Consensus 202 ~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~e---l~~~l~~~ 249 (253)
+|+.+++.+|++ +.+.. .. +.....+++++++..+ +..++++.
T Consensus 103 ~D~~~~~~ag~~-~~v~~-~~---~~~~~~a~~i~~~~~~~g~~~~~~~~~ 148 (154)
T TIGR01670 103 IDWPVMEKVGLS-VAVAD-AH---PLLIPRADYVTRIAGGRGAVREVCELL 148 (154)
T ss_pred HHHHHHHHCCCe-EecCC-cC---HHHHHhCCEEecCCCCCcHHHHHHHHH
Confidence 999999999998 44432 11 2334445556654432 45555443
No 78
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.73 E-value=5.6e-18 Score=129.47 Aligned_cols=122 Identities=23% Similarity=0.170 Sum_probs=80.8
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC-CcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEE
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ-GTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALH 195 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~-~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~ 195 (253)
+.....+..++ .|.+ .++||.+.......-...+-.. ...+............||+|++|+.+++.++ +++++++|
T Consensus 124 ~~l~~a~~~l~-~g~~-~i~tN~D~~~~~~~~~~~~~G~~~~~i~~~~~~~~~~~gKP~~~~~~~~~~~~~-~~~~~~~~ 200 (249)
T TIGR01457 124 EKFATATLAIR-KGAH-FIGTNGDLAIPTERGLLPGNGSLITVLEVATGVKPVYIGKPNAIIMEKAVEHLG-TEREETLM 200 (249)
T ss_pred HHHHHHHHHHH-CCCe-EEEECCCCCCCCCCCCCCCcHHHHHHHHHHhCCCccccCCChHHHHHHHHHHcC-CCcccEEE
Confidence 34445566664 5777 6889988765422111111110 0012222223344457999999999999999 99999999
Q ss_pred EcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhh---cCCcccCCHHHH
Q 039449 196 IGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRK---SGAIVLPDLVAV 242 (253)
Q Consensus 196 iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~---~~~~~i~~l~el 242 (253)
|||++.+|+.+|+++|++++++. ++....+.+.. .++++++++.++
T Consensus 201 VGD~~~~Di~~a~~~G~~~v~v~-~G~~~~~~~~~~~~~pd~~v~~l~~~ 249 (249)
T TIGR01457 201 VGDNYLTDIRAGIDAGIDTLLVH-TGVTKAEEVAGLPIAPTHVVSSLAEW 249 (249)
T ss_pred ECCCchhhHHHHHHcCCcEEEEc-CCCCCHHHHhcCCCCCCEEeCChhhC
Confidence 99997479999999999999998 45444444332 355788888764
No 79
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=99.71 E-value=3e-16 Score=114.39 Aligned_cols=94 Identities=17% Similarity=0.273 Sum_probs=77.4
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccc------------cCccCCCHHHHHH
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGL------------EGVEKPDPRIYEI 180 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~------------~~~~kp~~~~~~~ 180 (253)
+.++|++.++++.++++|++++|+|++....++..++.+|+.. +|...+.... ......|...++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~~--~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~l~~ 149 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGIDD--VFANRLEFDDNGLLTGPIEGQVNPEGECKGKVLKE 149 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCch--heeeeEEECCCCEEeCccCCcccCCcchHHHHHHH
Confidence 3678999999999999999999999999999999999999987 6554443321 1122456788888
Q ss_pred HHHHhCCCCCCceEEEcCCcccchhhhhhc
Q 039449 181 ALERAGNIAPEEALHIGDSFRKDYVPAKSV 210 (253)
Q Consensus 181 ~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~ 210 (253)
+++.++ ++++++++|||+. +|+.+++.+
T Consensus 150 ~~~~~~-~~~~~~~~iGDs~-~D~~~~~~a 177 (177)
T TIGR01488 150 LLEESK-ITLKKIIAVGDSV-NDLPMLKLA 177 (177)
T ss_pred HHHHhC-CCHHHEEEEeCCH-HHHHHHhcC
Confidence 899998 9999999999999 999998764
No 80
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=99.71 E-value=6.9e-17 Score=117.70 Aligned_cols=109 Identities=21% Similarity=0.258 Sum_probs=86.9
Q ss_pred HHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCc
Q 039449 121 PFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSF 200 (253)
Q Consensus 121 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~ 200 (253)
..++.|+++|++++|+||.....+...++.+|+.. +|. ..+++++.+..++++++ +++++++||||+.
T Consensus 55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~--~f~---------g~~~k~~~l~~~~~~~g-l~~~ev~~VGDs~ 122 (183)
T PRK09484 55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITH--LYQ---------GQSNKLIAFSDLLEKLA-IAPEQVAYIGDDL 122 (183)
T ss_pred HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCce--eec---------CCCcHHHHHHHHHHHhC-CCHHHEEEECCCH
Confidence 35667778999999999999999999999999986 443 13567899999999999 9999999999999
Q ss_pred ccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccC------CHHHHHHHHh
Q 039449 201 RKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLP------DLVAVKEFLT 247 (253)
Q Consensus 201 ~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~------~l~el~~~l~ 247 (253)
+|+.+++++|++++ +. . ..+......+++++ .+.|+.+++.
T Consensus 123 -~D~~~a~~aG~~~~-v~-~---~~~~~~~~a~~v~~~~~g~g~~~el~~~i~ 169 (183)
T PRK09484 123 -IDWPVMEKVGLSVA-VA-D---AHPLLLPRADYVTRIAGGRGAVREVCDLLL 169 (183)
T ss_pred -HHHHHHHHCCCeEe-cC-C---hhHHHHHhCCEEecCCCCCCHHHHHHHHHH
Confidence 99999999999954 43 1 12233344567775 6788877664
No 81
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=99.71 E-value=3.1e-16 Score=117.43 Aligned_cols=94 Identities=12% Similarity=0.093 Sum_probs=75.3
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCc----chhhhhhhhcCC--CCCcceeEeeeccccCccCCCHHHHHHHHHHhC
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEY----RYQDVILPALGV--NQGTEWDFGVFSGLEGVEKPDPRIYEIALERAG 186 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~----~~~~~~l~~~gl--~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~ 186 (253)
..++||+.++|+.|+++|++++++||... ..++.+++.+|+ .. +|..++..+. ..||++.. .+++++
T Consensus 113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~--~f~vil~gd~--~~K~~K~~---~l~~~~ 185 (237)
T PRK11009 113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADN--MNPVIFAGDK--PGQYTKTQ---WLKKKN 185 (237)
T ss_pred CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCccc--ceeEEEcCCC--CCCCCHHH---HHHhcC
Confidence 47889999999999999999999999753 245666777999 65 7776655543 25666653 556677
Q ss_pred CCCCCceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 187 NIAPEEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 187 ~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
+ ++||||+. +|+.+|+++|+.+|.+.+
T Consensus 186 -i----~I~IGDs~-~Di~aA~~AGi~~I~v~~ 212 (237)
T PRK11009 186 -I----RIFYGDSD-NDITAAREAGARGIRILR 212 (237)
T ss_pred -C----eEEEcCCH-HHHHHHHHcCCcEEEEec
Confidence 5 89999999 999999999999999995
No 82
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=99.70 E-value=4.5e-17 Score=123.31 Aligned_cols=78 Identities=32% Similarity=0.485 Sum_probs=66.1
Q ss_pred CccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhh---hcCCcccCCHHHHHHH
Q 039449 169 GVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWR---KSGAIVLPDLVAVKEF 245 (253)
Q Consensus 169 ~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~---~~~~~~i~~l~el~~~ 245 (253)
-.+||++.+++.+++.++ .++++++||||++++||.+|+++|+.+++|. +|....+++. ..+.++++|+.++...
T Consensus 187 ~~GKP~~~i~~~al~~~~-~~~~~~~mVGD~~~TDI~~a~~~G~~t~LV~-TGv~~~~~~~~~~~~p~~v~~sl~~~~~~ 264 (269)
T COG0647 187 VIGKPSPAIYEAALEKLG-LDRSEVLMVGDRLDTDILGAKAAGLDTLLVL-TGVSSAEDLDRAEVKPTYVVDSLAELITA 264 (269)
T ss_pred ccCCCCHHHHHHHHHHhC-CCcccEEEEcCCchhhHHHHHHcCCCEEEEc-cCCCChhhhhhhccCCcchHhhHHHHHhh
Confidence 356999999999999999 9999999999999999999999999999999 4655444433 3356899999999877
Q ss_pred Hhh
Q 039449 246 LTS 248 (253)
Q Consensus 246 l~~ 248 (253)
+..
T Consensus 265 ~~~ 267 (269)
T COG0647 265 LKE 267 (269)
T ss_pred hhc
Confidence 754
No 83
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=99.69 E-value=7.8e-17 Score=121.19 Aligned_cols=89 Identities=25% Similarity=0.411 Sum_probs=78.7
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
+++|++.++|++|++.|++++++|+.....+..+.+.+|+.. ..+++... .||.+.++..+++.++ .++++|
T Consensus 127 ~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~-----~~v~a~~~--~kP~~k~~~~~i~~l~-~~~~~v 198 (215)
T PF00702_consen 127 PLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD-----SIVFARVI--GKPEPKIFLRIIKELQ-VKPGEV 198 (215)
T ss_dssp EBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS-----EEEEESHE--TTTHHHHHHHHHHHHT-CTGGGE
T ss_pred cchhhhhhhhhhhhccCcceeeeecccccccccccccccccc-----cccccccc--ccccchhHHHHHHHHh-cCCCEE
Confidence 678999999999999999999999999999999999999965 11222222 7899999999999999 999999
Q ss_pred EEEcCCcccchhhhhhcC
Q 039449 194 LHIGDSFRKDYVPAKSVG 211 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G 211 (253)
+||||+. ||+.++++||
T Consensus 199 ~~vGDg~-nD~~al~~Ag 215 (215)
T PF00702_consen 199 AMVGDGV-NDAPALKAAG 215 (215)
T ss_dssp EEEESSG-GHHHHHHHSS
T ss_pred EEEccCH-HHHHHHHhCc
Confidence 9999999 9999999987
No 84
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.67 E-value=2.7e-16 Score=124.12 Aligned_cols=103 Identities=13% Similarity=0.060 Sum_probs=91.8
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecc-------ccCccCCCHHHHHHHHHHhC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSG-------LEGVEKPDPRIYEIALERAG 186 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~-------~~~~~kp~~~~~~~~~~~~~ 186 (253)
.++|++.++++.|+++|++++++||.+....+..++.+++.. .+|+.+.... ..+..||+|..+..++++++
T Consensus 187 ~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~~-~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~ 265 (300)
T PHA02530 187 KPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQTD-IWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKI 265 (300)
T ss_pred CCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHcC-CchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHHh
Confidence 678999999999999999999999999999999999999873 2677766666 34567999999999999998
Q ss_pred CC-CCCceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 187 NI-APEEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 187 ~~-~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
. ++++|++|||+. +|+.+|+++|++++++.+
T Consensus 266 -~~~~~~~~~vgD~~-~d~~~a~~~Gi~~i~v~~ 297 (300)
T PHA02530 266 -APKYDVLLAVDDRD-QVVDMWRRIGLECWQVAP 297 (300)
T ss_pred -ccCceEEEEEcCcH-HHHHHHHHhCCeEEEecC
Confidence 8 579999999999 899999999999999974
No 85
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.64 E-value=2.3e-15 Score=117.30 Aligned_cols=125 Identities=17% Similarity=0.277 Sum_probs=78.7
Q ss_pred CCChHHHHHHHHHcCCEEEEEeCCCc-----chhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCC
Q 039449 116 FPDSQPFLRWAREKGLIVGIISNAEY-----RYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAP 190 (253)
Q Consensus 116 ~~~~~~~l~~l~~~g~~~~i~s~~~~-----~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 190 (253)
++++.+++..++..+..+.++++... ...+.+.+.+++.. .+......+.......|+.+++.+++.+| +++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~~~~ei~~~~~~K~~~l~~l~~~~g-i~~ 215 (272)
T PRK10530 139 FTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLEC--EWSWHDQVDIARKGNSKGKRLTQWVEAQG-WSM 215 (272)
T ss_pred eEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceE--EEecCceEEEecCCCChHHHHHHHHHHcC-CCH
Confidence 45666777777666666666666442 12333334444431 11000011222233457789999999999 999
Q ss_pred CceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHH--HHHHHhhh
Q 039449 191 EEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVA--VKEFLTSE 249 (253)
Q Consensus 191 ~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~e--l~~~l~~~ 249 (253)
+++++|||+. ||+.|++.+|+..++-+ ..+.+....++++++-++ +..+|++.
T Consensus 216 ~e~i~~GD~~-NDi~m~~~ag~~vamgn-----a~~~lk~~Ad~v~~~n~~dGv~~~l~~~ 270 (272)
T PRK10530 216 KNVVAFGDNF-NDISMLEAAGLGVAMGN-----ADDAVKARADLVIGDNTTPSIAEFIYSH 270 (272)
T ss_pred HHeEEeCCCh-hhHHHHHhcCceEEecC-----chHHHHHhCCEEEecCCCCcHHHHHHHH
Confidence 9999999999 99999999998766543 134455566677766554 66666543
No 86
>PRK11590 hypothetical protein; Provisional
Probab=99.63 E-value=7.8e-14 Score=104.27 Aligned_cols=189 Identities=11% Similarity=-0.038 Sum_probs=105.2
Q ss_pred CceEEEEecCCceeccCCCHHHHHHHHH-HHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHH
Q 039449 6 RLRCITVDVTGTLLAYKGELGDYYCMAA-KSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSF 84 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (253)
+.|+++||+||||++ ..+...+...+ +++|+.......... .+|.+........... ....+
T Consensus 5 ~~k~~iFD~DGTL~~--~d~~~~~~~~~~~~~g~~~~~~~~~~~--------------~ig~~l~~~~~~~~~~-~~~~~ 67 (211)
T PRK11590 5 ERRVVFFDLDGTLHQ--QDMFGSFLRYLLRRQPLNLLLVLPLLP--------------VIGLGLLVKGRAARWP-MSLLL 67 (211)
T ss_pred cceEEEEecCCCCcc--cchHHHHHHHHHHhcchhhHHHhHHHH--------------HhccCcccchhhhhhh-HHHHH
Confidence 468999999999993 33555666655 787765433222221 1222111100000000 00001
Q ss_pred HHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHH-HHHHHcCCEEEEEeCCCcchhhhhhhhcCC---CCCccee
Q 039449 85 VRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFL-RWAREKGLIVGIISNAEYRYQDVILPALGV---NQGTEWD 160 (253)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl---~~~~~f~ 160 (253)
-......+.+++......+.+.+... ..++||+.++| +.+++.|++++|+||.....++.+++.+|+ .. ...
T Consensus 68 ~~~~~g~~~~~~~~~~~~f~~~~~~~--~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~~~~--~i~ 143 (211)
T PRK11590 68 WGCTFGHSEARLQALEADFVRWFRDN--VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLPRVN--LIA 143 (211)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHh--CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccccCc--eEE
Confidence 10001224444444444442222111 36699999999 578889999999999999999999999885 22 111
Q ss_pred Ee----eeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 161 FG----VFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 161 ~~----~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
.. +++...+..--..+-...+-+.++ .+...+.+.|||. +|+.+...+|-+. .|+
T Consensus 144 t~l~~~~tg~~~g~~c~g~~K~~~l~~~~~-~~~~~~~aY~Ds~-~D~pmL~~a~~~~-~vn 202 (211)
T PRK11590 144 SQMQRRYGGWVLTLRCLGHEKVAQLERKIG-TPLRLYSGYSDSK-QDNPLLYFCQHRW-RVT 202 (211)
T ss_pred EEEEEEEccEECCccCCChHHHHHHHHHhC-CCcceEEEecCCc-ccHHHHHhCCCCE-EEC
Confidence 11 111111111111223333444457 6778889999999 9999999999764 444
No 87
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=99.63 E-value=1.1e-15 Score=116.64 Aligned_cols=99 Identities=19% Similarity=0.205 Sum_probs=80.3
Q ss_pred CCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEe--eeccccCccCCCHHHHHHHHHHhCCCC-CCc
Q 039449 116 FPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFG--VFSGLEGVEKPDPRIYEIALERAGNIA-PEE 192 (253)
Q Consensus 116 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~--~~~~~~~~~kp~~~~~~~~~~~~~~~~-~~~ 192 (253)
++++.++++.+.++|+++ ++||.+.......+..++... +|..+ .........||+|+.++.++++++ .. +++
T Consensus 140 ~~~~~~~l~~l~~~g~~~-i~tN~d~~~~~~~~~~~~~g~--~~~~i~~~g~~~~~~gKP~~~~~~~~~~~~~-~~~~~~ 215 (242)
T TIGR01459 140 LDEFDELFAPIVARKIPN-ICANPDRGINQHGIYRYGAGY--YAELIKQLGGKVIYSGKPYPAIFHKALKECS-NIPKNR 215 (242)
T ss_pred HHHHHHHHHHHHhCCCcE-EEECCCEeccCCCceEecccH--HHHHHHHhCCcEecCCCCCHHHHHHHHHHcC-CCCccc
Confidence 567888999988889997 889999888776777777665 55543 233333467999999999999998 75 578
Q ss_pred eEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 193 ALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 193 ~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
++||||+..+|+.+|+++|+.++++.
T Consensus 216 ~~~vGD~~~~Di~~a~~~G~~~i~v~ 241 (242)
T TIGR01459 216 MLMVGDSFYTDILGANRLGIDTALVL 241 (242)
T ss_pred EEEECCCcHHHHHHHHHCCCeEEEEe
Confidence 99999994489999999999999985
No 88
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=99.62 E-value=4.8e-14 Score=105.05 Aligned_cols=200 Identities=18% Similarity=0.206 Sum_probs=128.7
Q ss_pred EEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHHHcC
Q 039449 9 CITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFVRAG 88 (253)
Q Consensus 9 ~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (253)
+++||+|+||++.+.. ..+++.++... ...++... ++ . ..+.++ +.+.+..++
T Consensus 2 LvvfDFD~TIvd~dsd-----~~v~~~l~~~~-~~~~l~~~-----------~~---~---~~wt~~----m~~vl~~L~ 54 (234)
T PF06888_consen 2 LVVFDFDHTIVDQDSD-----DWVIELLPPEE-LPEELRES-----------YP---K---GGWTEY----MDRVLQLLH 54 (234)
T ss_pred EEEEeCCCCccCCccH-----HHHHHhcCCcc-cHHHHHHh-----------cc---c---cchHHH----HHHHHHHHH
Confidence 5899999999997652 12344554332 11222221 11 0 112233 344343332
Q ss_pred C-CCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHH--HcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeec
Q 039449 89 Y-DYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAR--EKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFS 165 (253)
Q Consensus 89 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~--~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~ 165 (253)
. ..+.+++.+.+.. +++.||+.++++.++ +.|+.++|+|+++..+++.+|+..|+.. .|+.+++-
T Consensus 55 ~~gvt~~~I~~~l~~----------ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~--~f~~I~TN 122 (234)
T PF06888_consen 55 EQGVTPEDIRDALRS----------IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD--CFSEIFTN 122 (234)
T ss_pred HcCCCHHHHHHHHHc----------CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc--ccceEEeC
Confidence 1 2356666555533 488899999999994 4799999999999999999999999988 77665553
Q ss_pred cc----cCc------------cCC----CHHHHHHHHHHh---CCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCC
Q 039449 166 GL----EGV------------EKP----DPRIYEIALERA---GNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKT 222 (253)
Q Consensus 166 ~~----~~~------------~kp----~~~~~~~~~~~~---~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~ 222 (253)
.. .|. .=| |...++..++.. | ...++++||||+. ||+.++.+.+-.-+...|.+.
T Consensus 123 pa~~~~~G~l~v~pyh~h~C~~C~~NmCK~~il~~~~~~~~~~g-~~~~rviYiGDG~-nD~Cp~~~L~~~D~v~~R~~~ 200 (234)
T PF06888_consen 123 PACFDADGRLRVRPYHSHGCSLCPPNMCKGKILERLLQEQAQRG-VPYDRVIYIGDGR-NDFCPALRLRPRDVVFPRKGY 200 (234)
T ss_pred CceecCCceEEEeCccCCCCCcCCCccchHHHHHHHHHHHhhcC-CCcceEEEECCCC-CCcCcccccCCCCEEecCCCC
Confidence 11 111 011 456666666653 5 6778999999999 999999998877666666565
Q ss_pred CChhhhhhcC------CcccCCHHHHHHHHhhh
Q 039449 223 PDAKEWRKSG------AIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 223 ~~~~~~~~~~------~~~i~~l~el~~~l~~~ 249 (253)
+-...+.+.+ .....|-.|+.+.|.++
T Consensus 201 ~l~~~i~~~~~~~~a~v~~W~~g~~i~~~l~~~ 233 (234)
T PF06888_consen 201 PLHKLIQKNPGEVKAEVVPWSSGEEILEILLQL 233 (234)
T ss_pred hHHHHHhcCCCcceeEEEecCCHHHHHHHHHhh
Confidence 5333333322 24566888888887764
No 89
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=99.62 E-value=1.5e-15 Score=103.98 Aligned_cols=89 Identities=10% Similarity=0.094 Sum_probs=74.0
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCC-CcchhhhhhhhcC-------CCCCcceeEeeeccccCccCCCHHHHHHHHHHh
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNA-EYRYQDVILPALG-------VNQGTEWDFGVFSGLEGVEKPDPRIYEIALERA 185 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~-~~~~~~~~l~~~g-------l~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~ 185 (253)
.++||+.++|++|+++|++++++||+ ....+...++..+ +.. +|+.++.+. .+|+|+.+..+++++
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~--~f~~~~~~~----~~pkp~~~~~a~~~l 102 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAE--YFDPLTIGY----WLPKSPRLVEIALKL 102 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHh--hhhhhhhcC----CCcHHHHHHHHHHHh
Confidence 45789999999999999999999999 7777778888888 666 777765553 358899999999999
Q ss_pred C-CCCCCceEEEcCCcccchhhhhh
Q 039449 186 G-NIAPEEALHIGDSFRKDYVPAKS 209 (253)
Q Consensus 186 ~-~~~~~~~~~iGD~~~~Di~~a~~ 209 (253)
| .+.+++|+||||+. .|+...++
T Consensus 103 g~~~~p~~~l~igDs~-~n~~~~~~ 126 (128)
T TIGR01681 103 NGVLKPKSILFVDDRP-DNNEEVDY 126 (128)
T ss_pred cCCCCcceEEEECCCH-hHHHHHHh
Confidence 6 27899999999999 68776543
No 90
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=99.61 E-value=5.1e-15 Score=111.15 Aligned_cols=124 Identities=18% Similarity=0.184 Sum_probs=80.4
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcchh-hhhhhhcCCCCCcceeEeeecc---ccCccCCCHHHHHHHHHHhCCCCCCceE
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYRYQ-DVILPALGVNQGTEWDFGVFSG---LEGVEKPDPRIYEIALERAGNIAPEEAL 194 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~~~-~~~l~~~gl~~~~~f~~~~~~~---~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 194 (253)
....+++|++-+. ..++||.+.... .......|-.. +...+..+. ..-.+||++.+++.++++++ ++|++++
T Consensus 170 L~kA~~yLqnP~c-lflatn~D~~~p~~~~~~ipG~G~--~v~av~~~t~R~P~v~GKP~~~m~~~l~~~~~-i~psRt~ 245 (306)
T KOG2882|consen 170 LMKALNYLQNPGC-LFLATNRDATTPPTPGVEIPGAGS--FVAAVKFATGRQPIVLGKPSTFMFEYLLEKFN-IDPSRTC 245 (306)
T ss_pred HHHHHHHhCCCCc-EEEeccCccccCCCCCeeccCCcc--HHHHHHHHhcCCCeecCCCCHHHHHHHHHHcC-CCcceEE
Confidence 4455666665543 346777765322 11111112111 112211111 12246999999999999999 9999999
Q ss_pred EEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhc-------CCcccCCHHHHHHHHh
Q 039449 195 HIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKS-------GAIVLPDLVAVKEFLT 247 (253)
Q Consensus 195 ~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~-------~~~~i~~l~el~~~l~ 247 (253)
||||++.+||.-++++|++++++. +|....+..... +++.++++.++...++
T Consensus 246 mvGDRL~TDIlFG~~~G~~TLLvl-tGv~~led~~~~~~~~~~~PDyy~~~l~d~~~~~~ 304 (306)
T KOG2882|consen 246 MVGDRLDTDILFGKNCGFKTLLVL-SGVTTLEDILEAQGDNKMVPDYYADSLGDLLPLLN 304 (306)
T ss_pred EEcccchhhhhHhhccCcceEEEe-cCcCcHHHHHhcccccCCCCchHHhhHHHHhhhcc
Confidence 999999999999999999999999 455544444333 4466777777766554
No 91
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=99.60 E-value=7.4e-14 Score=99.16 Aligned_cols=126 Identities=20% Similarity=0.247 Sum_probs=93.5
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcc---------------hhhhhhhhcCCCCCcceeEeeecccc-----CccCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYR---------------YQDVILPALGVNQGTEWDFGVFSGLE-----GVEKP 173 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~---------------~~~~~l~~~gl~~~~~f~~~~~~~~~-----~~~kp 173 (253)
.+.|++.+.+..+++.|++++++||.+-- .+...++..|. .|+.++++... .-+||
T Consensus 31 ~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv----~id~i~~Cph~p~~~c~cRKP 106 (181)
T COG0241 31 QFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGV----KIDGILYCPHHPEDNCDCRKP 106 (181)
T ss_pred ccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCC----ccceEEECCCCCCCCCcccCC
Confidence 66789999999999999999999996331 12344455554 45666666543 34699
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHH
Q 039449 174 DPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFL 246 (253)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l 246 (253)
++.+++.++++++ +++++.++|||+. +|+++|.++|++.+.+.+ +......-.......+.++.++..++
T Consensus 107 ~~gm~~~~~~~~~-iD~~~s~~VGD~~-~Dlq~a~n~gi~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (181)
T COG0241 107 KPGMLLSALKEYN-IDLSRSYVVGDRL-TDLQAAENAGIKGVLVLT-GIGVTTDGAGRAKWVFDSLAEFANLI 176 (181)
T ss_pred ChHHHHHHHHHhC-CCccceEEecCcH-HHHHHHHHCCCCceEEEc-CcccccccccccccccccHHHHHHHH
Confidence 9999999999999 9999999999999 899999999999887773 22211111113346778888877443
No 92
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=99.56 E-value=7.5e-14 Score=110.67 Aligned_cols=75 Identities=17% Similarity=0.246 Sum_probs=58.9
Q ss_pred ccCCCHHHHHHHHHHh--------CCC-----CCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhh--hhcCCc
Q 039449 170 VEKPDPRIYEIALERA--------GNI-----APEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEW--RKSGAI 234 (253)
Q Consensus 170 ~~kp~~~~~~~~~~~~--------~~~-----~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~--~~~~~~ 234 (253)
.+||++.+|+.+++.+ + . ++++++||||++.+||.+|+++|+.+++|.. |....++. ...+++
T Consensus 231 ~GKP~~~~~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~mIGD~~~tDI~ga~~~G~~silV~t-G~~~~~~~~~~~~p~~ 308 (321)
T TIGR01456 231 LGKPTKLTYDFAEDVLIDWEKRLSG-TKPSTSPFHALYMVGDNPASDIIGAQNYGWFSCLVKT-GVYNGGDDLKECKPTL 308 (321)
T ss_pred cCCCChHHHHHHHHHHHHHHhhhcc-ccccCCChheEEEEcCChhhhhhhHHhCCceEEEecc-cccCCCCCCCCCCCCE
Confidence 4799999999988887 4 3 3479999999998999999999999999983 42222211 123568
Q ss_pred ccCCHHHHHHHH
Q 039449 235 VLPDLVAVKEFL 246 (253)
Q Consensus 235 ~i~~l~el~~~l 246 (253)
+++|+.|+...|
T Consensus 309 vv~~l~e~~~~i 320 (321)
T TIGR01456 309 IVNDVFDAVTKI 320 (321)
T ss_pred EECCHHHHHHHh
Confidence 999999998776
No 93
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=99.56 E-value=1.1e-14 Score=115.43 Aligned_cols=91 Identities=10% Similarity=0.135 Sum_probs=81.2
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhh----cCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPA----LGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIA 189 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~----~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 189 (253)
.+++++.++|+.|+++|+.++|+|+++...+...++. +++.. +|+.+... .||+++.+..++++++ ++
T Consensus 31 ~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~~~~~~~~~~--~f~~~~~~-----~~pk~~~i~~~~~~l~-i~ 102 (320)
T TIGR01686 31 PLHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFERRKDFILQAE--DFDARSIN-----WGPKSESLRKIAKKLN-LG 102 (320)
T ss_pred ccHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHhCccccCcHH--HeeEEEEe-----cCchHHHHHHHHHHhC-CC
Confidence 3468999999999999999999999999999999998 88887 77776443 5799999999999999 99
Q ss_pred CCceEEEcCCcccchhhhhhcCCe
Q 039449 190 PEEALHIGDSFRKDYVPAKSVGMH 213 (253)
Q Consensus 190 ~~~~~~iGD~~~~Di~~a~~~G~~ 213 (253)
+++++||||++ .|+.++++++..
T Consensus 103 ~~~~vfidD~~-~d~~~~~~~lp~ 125 (320)
T TIGR01686 103 TDSFLFIDDNP-AERANVKITLPV 125 (320)
T ss_pred cCcEEEECCCH-HHHHHHHHHCCC
Confidence 99999999999 899999997764
No 94
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.53 E-value=1.3e-14 Score=102.18 Aligned_cols=96 Identities=17% Similarity=0.065 Sum_probs=85.3
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCc
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEE 192 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 192 (253)
..++||+.++|++|+ ++++++|+|++....++.+++.+++.. .+|+.+++.++....||+ +.++++.++ .++++
T Consensus 44 v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~~-~~f~~i~~~~d~~~~KP~---~~k~l~~l~-~~p~~ 117 (148)
T smart00577 44 VKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPKK-YFGYRRLFRDECVFVKGK---YVKDLSLLG-RDLSN 117 (148)
T ss_pred EEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcCC-CEeeeEEECccccccCCe---EeecHHHcC-CChhc
Confidence 377899999999998 569999999999999999999999864 256888888888888886 888999999 99999
Q ss_pred eEEEcCCcccchhhhhhcCCeEE
Q 039449 193 ALHIGDSFRKDYVPAKSVGMHAL 215 (253)
Q Consensus 193 ~~~iGD~~~~Di~~a~~~G~~~i 215 (253)
|++|||++ +|+.++.++|+..-
T Consensus 118 ~i~i~Ds~-~~~~aa~~ngI~i~ 139 (148)
T smart00577 118 VIIIDDSP-DSWPFHPENLIPIK 139 (148)
T ss_pred EEEEECCH-HHhhcCccCEEEec
Confidence 99999999 89999999987654
No 95
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=99.53 E-value=2.9e-14 Score=88.17 Aligned_cols=71 Identities=30% Similarity=0.495 Sum_probs=59.7
Q ss_pred ccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhh---hcCCcccCCHHHH
Q 039449 170 VEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWR---KSGAIVLPDLVAV 242 (253)
Q Consensus 170 ~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~---~~~~~~i~~l~el 242 (253)
.+||+|.++..++++++ ++++++++|||++.+|+.+|+++|+.+|+|.+ +....+.+. ..++++++||.|+
T Consensus 2 ~gKP~p~~~~~a~~~~~-~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~t-G~~~~~~~~~~~~~pd~vv~~l~e~ 75 (75)
T PF13242_consen 2 CGKPSPGMLEQALKRLG-VDPSRCVMVGDSLETDIEAAKAAGIDTILVLT-GVYSPEDLEKAEHKPDYVVDDLKEA 75 (75)
T ss_dssp CSTTSHHHHHHHHHHHT-SGGGGEEEEESSTTTHHHHHHHTTSEEEEESS-SSSCCCGHHHSSSTTSEEESSGGGH
T ss_pred CCCCcHHHHHHHHHHcC-CCHHHEEEEcCCcHhHHHHHHHcCCcEEEECC-CCCCHHHHhccCCCCCEEECCHHhC
Confidence 36999999999999999 99999999999933999999999999999994 544443332 4566899999885
No 96
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.52 E-value=1.7e-14 Score=109.56 Aligned_cols=73 Identities=22% Similarity=0.214 Sum_probs=56.4
Q ss_pred CccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHH--HHHHH
Q 039449 169 GVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVA--VKEFL 246 (253)
Q Consensus 169 ~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~e--l~~~l 246 (253)
....+|+.+++.+++.++ ++++++++|||+. ||+.|++.+|+..++-+. .+.+++...+++++-++ +...|
T Consensus 153 ~~~~~Kg~al~~l~~~~~-i~~~~~i~~GD~~-NDi~m~~~ag~~vam~Na-----~~~vk~~a~~v~~~n~~~Gv~~~l 225 (230)
T PRK01158 153 SPGVNKGTGLKKLAELMG-IDPEEVAAIGDSE-NDLEMFEVAGFGVAVANA-----DEELKEAADYVTEKSYGEGVAEAI 225 (230)
T ss_pred eCCCChHHHHHHHHHHhC-CCHHHEEEECCch-hhHHHHHhcCceEEecCc-----cHHHHHhcceEecCCCcChHHHHH
Confidence 344678899999999999 9999999999999 999999999999887662 23444555666665443 55555
Q ss_pred hh
Q 039449 247 TS 248 (253)
Q Consensus 247 ~~ 248 (253)
++
T Consensus 226 ~~ 227 (230)
T PRK01158 226 EH 227 (230)
T ss_pred HH
Confidence 44
No 97
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=99.52 E-value=7.4e-13 Score=104.02 Aligned_cols=104 Identities=20% Similarity=0.186 Sum_probs=84.8
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhc-C-------CCCCcceeEeeeccccC---------------
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPAL-G-------VNQGTEWDFGVFSGLEG--------------- 169 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~-g-------l~~~~~f~~~~~~~~~~--------------- 169 (253)
+...|++.++|+.|+++|++++|+||.....++..++.+ | +.. +|+.++++....
T Consensus 183 v~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~--yFD~IIt~a~KP~FF~~~~pf~~v~~~ 260 (343)
T TIGR02244 183 VLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRD--YFDVVIVDARKPGFFTEGRPFRQVDVE 260 (343)
T ss_pred hccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHh--hCcEEEeCCCCCcccCCCCceEEEeCC
Confidence 356899999999999999999999999999999999996 6 777 898877765422
Q ss_pred --ccCCCH------------HHHHHHHHHhCCCCCCceEEEcCCcccchhhhh-hcCCeEEEEcC
Q 039449 170 --VEKPDP------------RIYEIALERAGNIAPEEALHIGDSFRKDYVPAK-SVGMHALLVDR 219 (253)
Q Consensus 170 --~~kp~~------------~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~-~~G~~~i~~~~ 219 (253)
..++.. --...+.+.++ ++++++++|||+...|+..++ .+|+.++++.+
T Consensus 261 ~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~-~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI~p 324 (343)
T TIGR02244 261 TGSLKWGEVDGLEPGKVYSGGSLKQFHELLK-WRGKEVLYFGDHIYGDLLRSKKKRGWRTAAIIP 324 (343)
T ss_pred CCcccCCccccccCCCeEeCCCHHHHHHHHC-CCCCcEEEECCcchHHHHhhHHhcCcEEEEEch
Confidence 001111 12345677788 999999999999999999998 99999999984
No 98
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.51 E-value=1.8e-13 Score=113.56 Aligned_cols=93 Identities=22% Similarity=0.325 Sum_probs=76.8
Q ss_pred cCCChHHHHHHHHHcCCEEEEEeCCCc------------chhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHH
Q 039449 115 VFPDSQPFLRWAREKGLIVGIISNAEY------------RYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIAL 182 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~s~~~~------------~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~ 182 (253)
++|++.+.|+.|++.|++++|+||... ..+..+++.+|+. |+.++..+....+||++.++..++
T Consensus 198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip----fdviia~~~~~~RKP~pGm~~~a~ 273 (526)
T TIGR01663 198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP----FQVFIAIGAGFYRKPLTGMWDHLK 273 (526)
T ss_pred cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc----eEEEEeCCCCCCCCCCHHHHHHHH
Confidence 579999999999999999999999876 2366778888874 666555555567799999999999
Q ss_pred HHhC---CCCCCceEEEcCCcccchhhhhhcCC
Q 039449 183 ERAG---NIAPEEALHIGDSFRKDYVPAKSVGM 212 (253)
Q Consensus 183 ~~~~---~~~~~~~~~iGD~~~~Di~~a~~~G~ 212 (253)
++++ .+++++++||||+. .|+.+++.+|-
T Consensus 274 ~~~~~~~~Id~~~S~~VGDaa-gr~~~g~~ag~ 305 (526)
T TIGR01663 274 EEANDGTEIQEDDCFFVGDAA-GRPANGKAAGK 305 (526)
T ss_pred HhcCcccCCCHHHeEEeCCcc-cchHHHHhcCC
Confidence 9983 28999999999999 78877666654
No 99
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=99.50 E-value=1.2e-12 Score=92.87 Aligned_cols=80 Identities=29% Similarity=0.440 Sum_probs=65.4
Q ss_pred CccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCC--ChhhhhhcCCcccCCHHHHHHHH
Q 039449 169 GVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTP--DAKEWRKSGAIVLPDLVAVKEFL 246 (253)
Q Consensus 169 ~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~--~~~~~~~~~~~~i~~l~el~~~l 246 (253)
..+||++..|+.+++.+| ++|++++||||....|+-+|..+||..|.|...... +.......++.+.+++.+..++|
T Consensus 178 vvGKP~~~fFe~al~~~g-v~p~~aVMIGDD~~dDvgGAq~~GMrgilVkTGK~rpsDe~k~~~~p~~~~d~f~~AVd~I 256 (262)
T KOG3040|consen 178 VVGKPSPFFFESALQALG-VDPEEAVMIGDDLNDDVGGAQACGMRGILVKTGKFRPSDEEKPPVPPDLTADNFADAVDLI 256 (262)
T ss_pred EecCCCHHHHHHHHHhcC-CChHHheEEccccccchhhHhhhcceeEEeeccccCCcccccCCCCcchhhhhHHHHHHHH
Confidence 356999999999999999 999999999999988999999999999999942222 23344445567899999988887
Q ss_pred hhh
Q 039449 247 TSE 249 (253)
Q Consensus 247 ~~~ 249 (253)
-+.
T Consensus 257 ~q~ 259 (262)
T KOG3040|consen 257 IQN 259 (262)
T ss_pred Hhh
Confidence 653
No 100
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=99.48 E-value=1.6e-12 Score=99.07 Aligned_cols=181 Identities=14% Similarity=0.079 Sum_probs=109.9
Q ss_pred EEEEecCCceeccCC---CHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCC-------hHHHHHH
Q 039449 9 CITVDVTGTLLAYKG---ELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMP-------NIVWWKT 78 (253)
Q Consensus 9 ~i~fD~DGTL~~~~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 78 (253)
-|+-|+|-||..... ..-.....+++....-. + .+......+...|.-+-..-.++ +.+||..
T Consensus 24 qvisDFD~Tlt~~~~~~g~~~~s~~~~~~~~~~~~---~----~~~~~~~~l~~~Y~PiE~d~~~~~~eK~~~m~eWw~k 96 (277)
T TIGR01544 24 QIISDFDYTLSRFSYEDGKRCPTCHGIFDNCKLLT---D----ECRKKLLQLKEKYYPIEVDPVLTVEEKYPYMVEWWTK 96 (277)
T ss_pred EEeeccCccceeeecCCCCCCcchHhHHhhCCCCC---H----HHHHHHHHHHhhccceecCCCCChHHhhhHHHHHHHH
Confidence 488899999998642 11223333444432211 1 22223333333333333333333 2344443
Q ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcc
Q 039449 79 CVRDSFVRAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTE 158 (253)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~ 158 (253)
...++...++ +.+.+...+.. ..+.+.||+.++++.|+++|++++|+|++....++..++.+|+.. .
T Consensus 97 -~~~l~~~~~~--~~e~i~~~v~~--------~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~--~ 163 (277)
T TIGR01544 97 -SHGLLVQQAF--PKAKIKEIVAE--------SDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYH--P 163 (277)
T ss_pred -HHHHHhcCCC--CHHHHHHHHhh--------cCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCC--c
Confidence 3334433333 44554444332 235889999999999999999999999999999999999999864 3
Q ss_pred eeEe------eeccccCccCCCH---------HHHHHHHHHhC-CCCCCceEEEcCCcccchhhhhhc
Q 039449 159 WDFG------VFSGLEGVEKPDP---------RIYEIALERAG-NIAPEEALHIGDSFRKDYVPAKSV 210 (253)
Q Consensus 159 f~~~------~~~~~~~~~kp~~---------~~~~~~~~~~~-~~~~~~~~~iGD~~~~Di~~a~~~ 210 (253)
+..+ +..+..-.++|.| ..++.+.+.++ ..++++|++|||+. +|+.||.-+
T Consensus 164 ~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~-~Dl~ma~g~ 230 (277)
T TIGR01544 164 NVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQ-GDLRMADGV 230 (277)
T ss_pred CceEEeeeEEECCCCeEeCCCCCcccccccHHHHHHHHHHHhCccCCcceEEEECcCh-hhhhHhcCC
Confidence 3332 2122222235554 45555676765 25788999999999 999998776
No 101
>COG4229 Predicted enolase-phosphatase [Energy production and conversion]
Probab=99.48 E-value=3.3e-12 Score=88.69 Aligned_cols=120 Identities=19% Similarity=0.254 Sum_probs=91.6
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcC---CCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCC
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALG---VNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIA 189 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~g---l~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 189 (253)
..+||++.+.+++.++.|++++|.|.++...+..+..+.. +.. +|..- +.. ....|-...-|.++++..| ++
T Consensus 102 ahlypDav~~ik~wk~~g~~vyiYSSGSV~AQkL~Fghs~agdL~~--lfsGy-fDt-tiG~KrE~~SY~kIa~~iG-l~ 176 (229)
T COG4229 102 AHLYPDAVQAIKRWKALGMRVYIYSSGSVKAQKLFFGHSDAGDLNS--LFSGY-FDT-TIGKKRESQSYAKIAGDIG-LP 176 (229)
T ss_pred cccCHhHHHHHHHHHHcCCcEEEEcCCCchhHHHhhcccccccHHh--hhcce-eec-cccccccchhHHHHHHhcC-CC
Confidence 4789999999999999999999999999988877665542 333 44432 211 2224666788999999999 99
Q ss_pred CCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHH
Q 039449 190 PEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLV 240 (253)
Q Consensus 190 ~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~ 240 (253)
|.+++|+.|++ +.+.+|+.+|+.++.+.|++..+... ..+..++.|+.
T Consensus 177 p~eilFLSDn~-~EL~AA~~vGl~t~l~~R~g~~P~~d--~~~~~~~~sf~ 224 (229)
T COG4229 177 PAEILFLSDNP-EELKAAAGVGLATGLAVRPGNAPVPD--GQGFLVYKSFE 224 (229)
T ss_pred chheEEecCCH-HHHHHHHhcchheeeeecCCCCCCCC--CcCceeeechh
Confidence 99999999999 89999999999999999766443322 22335666665
No 102
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=99.48 E-value=1.3e-12 Score=91.72 Aligned_cols=94 Identities=13% Similarity=0.182 Sum_probs=73.5
Q ss_pred CCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCc------------cCCCHHHHH
Q 039449 112 PYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGV------------EKPDPRIYE 179 (253)
Q Consensus 112 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~------------~kp~~~~~~ 179 (253)
+.++.||+++++..|+++|.+++++|++....+..+..++|++....+...+..+..|. +--|++.+.
T Consensus 86 k~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~ 165 (227)
T KOG1615|consen 86 KPTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIA 165 (227)
T ss_pred CCccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHH
Confidence 45888999999999999999999999999999999999999985333433333322221 234667777
Q ss_pred HHHHHhCCCCCCceEEEcCCcccchhhhhh
Q 039449 180 IALERAGNIAPEEALHIGDSFRKDYVPAKS 209 (253)
Q Consensus 180 ~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~ 209 (253)
.+.+ + .+.+.++||||.. ||+++..-
T Consensus 166 ~lrk--~-~~~~~~~mvGDGa-tDlea~~p 191 (227)
T KOG1615|consen 166 LLRK--N-YNYKTIVMVGDGA-TDLEAMPP 191 (227)
T ss_pred HHHh--C-CChheeEEecCCc-cccccCCc
Confidence 7666 6 7788999999999 99987665
No 103
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=99.45 E-value=3e-12 Score=91.72 Aligned_cols=207 Identities=14% Similarity=0.192 Sum_probs=130.8
Q ss_pred CceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHH
Q 039449 6 RLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFV 85 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (253)
+--+++||+|-||++.++.- .+...++... ...+.+..+ ....|.+++.+.+.
T Consensus 12 ~ril~~FDFD~TIid~dSD~-----wVv~~lp~~~-l~~qL~~t~---------------------p~~~Wne~M~rv~k 64 (256)
T KOG3120|consen 12 PRILLVFDFDRTIIDQDSDN-----WVVDELPTTD-LFNQLRDTY---------------------PKGFWNELMDRVFK 64 (256)
T ss_pred CcEEEEEecCceeecCCcch-----HHHHhcccch-hHHHHHHhc---------------------ccchHHHHHHHHHH
Confidence 45689999999999976521 1223333321 112222111 12345566676666
Q ss_pred HcCCC-CChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcC-CEEEEEeCCCcchhhhhhhhcCCCCCcceeEee
Q 039449 86 RAGYD-YDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKG-LIVGIISNAEYRYQDVILPALGVNQGTEWDFGV 163 (253)
Q Consensus 86 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g-~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~ 163 (253)
.++.. .+.+++.+.++. +++.||+.++++.+++.| +.+.|+|..+..+++.+++.+|+.+ .|..++
T Consensus 65 ~Lheqgv~~~~ik~~~r~----------iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d--~F~~If 132 (256)
T KOG3120|consen 65 ELHEQGVRIAEIKQVLRS----------IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHD--LFSEIF 132 (256)
T ss_pred HHHHcCCCHHHHHHHHhc----------CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHH--HHHHHh
Confidence 66532 344555554443 478899999999999988 4999999999999999999999988 777655
Q ss_pred eccc----cCc-------------cCC----CHHHHHHHH-HHh--CCCCCCceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 164 FSGL----EGV-------------EKP----DPRIYEIAL-ERA--GNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 164 ~~~~----~~~-------------~kp----~~~~~~~~~-~~~--~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
+-.. .|. .=| |...+..+. +.+ | +..++.+||||+. ||+......-..-+...+
T Consensus 133 TNPa~~da~G~L~v~pyH~~hsC~~CPsNmCKg~Vl~~~~~s~~~~g-v~yer~iYvGDG~-nD~CP~l~Lr~~D~ampR 210 (256)
T KOG3120|consen 133 TNPACVDASGRLLVRPYHTQHSCNLCPSNMCKGLVLDELVASQLKDG-VRYERLIYVGDGA-NDFCPVLRLRACDVAMPR 210 (256)
T ss_pred cCCcccCCCCcEEeecCCCCCccCcCchhhhhhHHHHHHHHHHhhcC-CceeeEEEEcCCC-CCcCcchhcccCceeccc
Confidence 4211 110 011 122222222 222 4 7778999999999 999988777666666666
Q ss_pred CCCCChhhhhhcC------CcccCCHHHHHHHHhhhhhcC
Q 039449 220 FKTPDAKEWRKSG------AIVLPDLVAVKEFLTSEISAC 253 (253)
Q Consensus 220 ~~~~~~~~~~~~~------~~~i~~l~el~~~l~~~~~~~ 253 (253)
.+.+-.......+ .....|-.++...|.+.+++|
T Consensus 211 kgfpl~k~~~~~p~~~kasV~~W~sg~d~~~~L~~lik~~ 250 (256)
T KOG3120|consen 211 KGFPLWKLISANPMLLKASVLEWSSGEDLERILQQLIKTI 250 (256)
T ss_pred CCCchHhhhhcCcceeeeeEEecccHHHHHHHHHHHHHHh
Confidence 6766554433332 235567778888777766543
No 104
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.43 E-value=2e-13 Score=103.43 Aligned_cols=99 Identities=19% Similarity=0.108 Sum_probs=66.0
Q ss_pred EEEEeCCCcchhhhhhhhcCCCCCccee-EeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcC
Q 039449 133 VGIISNAEYRYQDVILPALGVNQGTEWD-FGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVG 211 (253)
Q Consensus 133 ~~i~s~~~~~~~~~~l~~~gl~~~~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G 211 (253)
..+.+....+.....++.++... .+. .....+......+|..++..+++.++ ++++++++|||+. ||+.|++.+|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ei~~~~~~K~~~i~~l~~~~~-i~~~~~i~~GD~~-NDi~m~~~ag 185 (225)
T TIGR01482 110 VKMRYGIDVDTVREIIKELGLNL--VAVDSGFDIHILPQGVNKGVAVKKLKEKLG-IKPGETLVCGDSE-NDIDLFEVPG 185 (225)
T ss_pred EEEeecCCHHHHHHHHHhcCceE--EEecCCcEEEEeeCCCCHHHHHHHHHHHhC-CCHHHEEEECCCH-hhHHHHHhcC
Confidence 34444445555566666665431 110 01112223445678899999999999 9999999999999 9999999999
Q ss_pred CeEEEEcCCCCCChhhhhhcCCcccCCHH
Q 039449 212 MHALLVDRFKTPDAKEWRKSGAIVLPDLV 240 (253)
Q Consensus 212 ~~~i~~~~~~~~~~~~~~~~~~~~i~~l~ 240 (253)
+..++-+. .+.+++..+++.++-.
T Consensus 186 ~~vam~Na-----~~~~k~~A~~vt~~~~ 209 (225)
T TIGR01482 186 FGVAVANA-----QPELKEWADYVTESPY 209 (225)
T ss_pred ceEEcCCh-----hHHHHHhcCeecCCCC
Confidence 99888662 2344555666655433
No 105
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.42 E-value=3.2e-12 Score=99.47 Aligned_cols=77 Identities=10% Similarity=-0.008 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHhCCCCC-CceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcC-Cccc--CC--HHHHHHHH
Q 039449 173 PDPRIYEIALERAGNIAP-EEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSG-AIVL--PD--LVAVKEFL 246 (253)
Q Consensus 173 p~~~~~~~~~~~~~~~~~-~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~-~~~i--~~--l~el~~~l 246 (253)
.|..+++.+++.++ +++ +++++|||+. ||+.|++.+|+.+++-+...... +.+.... ..+. .+ =+.+...|
T Consensus 190 ~Kg~al~~l~~~~~-i~~~~~v~~~GDs~-NDi~m~~~ag~~vam~NA~~~~k-~~~~~~a~~~v~~~~~~~~~Gv~~~l 266 (273)
T PRK00192 190 DKGKAVRWLKELYR-RQDGVETIALGDSP-NDLPMLEAADIAVVVPGPDGPNP-PLLPGIADGEFILASAPGPEGWAEAI 266 (273)
T ss_pred CHHHHHHHHHHHHh-ccCCceEEEEcCCh-hhHHHHHhCCeeEEeCCCCCCCc-ccCccccCCceEEecCCCcHHHHHHH
Confidence 56789999999999 999 9999999999 99999999999999988432221 1111222 2333 22 34567777
Q ss_pred hhhhhc
Q 039449 247 TSEISA 252 (253)
Q Consensus 247 ~~~~~~ 252 (253)
++.++.
T Consensus 267 ~~~~~~ 272 (273)
T PRK00192 267 NKLLSK 272 (273)
T ss_pred HHHHhh
Confidence 766553
No 106
>PRK08238 hypothetical protein; Validated
Probab=99.42 E-value=4e-12 Score=105.13 Aligned_cols=95 Identities=18% Similarity=0.143 Sum_probs=75.9
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCc
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEE 192 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 192 (253)
.++.|++.+++++++++|++++++|+.....++.+++++|+ |+.++.++.....||++.. ..+.+.++ .++
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl-----Fd~Vigsd~~~~~kg~~K~-~~l~~~l~---~~~ 141 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL-----FDGVFASDGTTNLKGAAKA-AALVEAFG---ERG 141 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC-----CCEEEeCCCccccCCchHH-HHHHHHhC---ccC
Confidence 35679999999999999999999999999999999999986 5666666665555554432 23445555 356
Q ss_pred eEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 193 ALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 193 ~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
+.++||+. +|+.+++.+| ..+.|+
T Consensus 142 ~~yvGDS~-~Dlp~~~~A~-~av~Vn 165 (479)
T PRK08238 142 FDYAGNSA-ADLPVWAAAR-RAIVVG 165 (479)
T ss_pred eeEecCCH-HHHHHHHhCC-CeEEEC
Confidence 89999999 9999999999 667777
No 107
>PTZ00445 p36-lilke protein; Provisional
Probab=99.41 E-value=1.1e-12 Score=94.42 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=77.2
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcch---------------hhhhhhhcCCCCCcceeEeee-----cc------c
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRY---------------QDVILPALGVNQGTEWDFGVF-----SG------L 167 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~---------------~~~~l~~~gl~~~~~f~~~~~-----~~------~ 167 (253)
.+.|....++.+|++.|++++|+|-.+... ++..++..+-+. ..+.++. .. .
T Consensus 75 ~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~--~i~~~~~yyp~~w~~p~~y~~ 152 (219)
T PTZ00445 75 SVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDF--KIKKVYAYYPKFWQEPSDYRP 152 (219)
T ss_pred cCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccc--eeeeeeeeCCcccCChhhhhh
Confidence 345677889999999999999999887743 334444333322 2222221 11 1
Q ss_pred cCccCCCHHH--H--HHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 168 EGVEKPDPRI--Y--EIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 168 ~~~~kp~~~~--~--~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
.+..||+|.. | +.+++++| ++|++++||+|+. .++++|+++|+.++.+.+
T Consensus 153 ~gl~KPdp~iK~yHle~ll~~~g-l~peE~LFIDD~~-~NVeaA~~lGi~ai~f~~ 206 (219)
T PTZ00445 153 LGLDAPMPLDKSYHLKQVCSDFN-VNPDEILFIDDDM-NNCKNALKEGYIALHVTG 206 (219)
T ss_pred hcccCCCccchHHHHHHHHHHcC-CCHHHeEeecCCH-HHHHHHHHCCCEEEEcCC
Confidence 2455999999 8 99999999 9999999999999 799999999999999974
No 108
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=99.40 E-value=4.1e-13 Score=90.98 Aligned_cols=84 Identities=21% Similarity=0.382 Sum_probs=72.9
Q ss_pred HHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcc
Q 039449 122 FLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFR 201 (253)
Q Consensus 122 ~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~ 201 (253)
-++.|.+.|++++|+|+.....++...+.+|+.. ++-+ .+.|..+++.++++++ ++++++.||||..
T Consensus 43 Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~-------~~qG----~~dK~~a~~~L~~~~~-l~~e~~ayiGDD~- 109 (170)
T COG1778 43 GIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKH-------LYQG----ISDKLAAFEELLKKLN-LDPEEVAYVGDDL- 109 (170)
T ss_pred HHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCce-------eeec----hHhHHHHHHHHHHHhC-CCHHHhhhhcCcc-
Confidence 4667788999999999999999999999999986 2222 2346689999999999 9999999999999
Q ss_pred cchhhhhhcCCeEEEEc
Q 039449 202 KDYVPAKSVGMHALLVD 218 (253)
Q Consensus 202 ~Di~~a~~~G~~~i~~~ 218 (253)
+|+....++|.+++..+
T Consensus 110 ~Dlpvm~~vGls~a~~d 126 (170)
T COG1778 110 VDLPVMEKVGLSVAVAD 126 (170)
T ss_pred ccHHHHHHcCCcccccc
Confidence 99999999999987655
No 109
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=99.39 E-value=8e-11 Score=87.64 Aligned_cols=121 Identities=12% Similarity=0.021 Sum_probs=76.0
Q ss_pred ChHHHHHHHHHHHHHhCCCCCCccCCChHHHHH-HHHHcCCEEEEEeCCCcchhhhhhhhcCCCCC-cceeEeeeccccC
Q 039449 92 DEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLR-WAREKGLIVGIISNAEYRYQDVILPALGVNQG-TEWDFGVFSGLEG 169 (253)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~-~~f~~~~~~~~~~ 169 (253)
+.+++.+....+...... ...++|++.+.|+ .++++|++++|+||.....++.+.+..++... ...-..+.....|
T Consensus 74 ~~~~l~~~~~~f~~~~~~--~~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~~~~i~t~le~~~gg 151 (210)
T TIGR01545 74 REAHLQDLEADFVAAFRD--KVTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHRLNLIASQIERGNGG 151 (210)
T ss_pred CHHHHHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccccCcEEEEEeEEeCCc
Confidence 455555555555444332 1367999999996 78889999999999999999988877554220 0111111110101
Q ss_pred c--cC--CCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEE
Q 039449 170 V--EK--PDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALL 216 (253)
Q Consensus 170 ~--~k--p~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~ 216 (253)
. +. -..+-...+-+.++ .+.+.+.+.|||. +|+.+...+|-+.+.
T Consensus 152 ~~~g~~c~g~~Kv~rl~~~~~-~~~~~~~aYsDS~-~D~pmL~~a~~~~~V 200 (210)
T TIGR01545 152 WVLPLRCLGHEKVAQLEQKIG-SPLKLYSGYSDSK-QDNPLLAFCEHRWRV 200 (210)
T ss_pred eEcCccCCChHHHHHHHHHhC-CChhheEEecCCc-ccHHHHHhCCCcEEE
Confidence 1 01 11222333444456 5677889999999 999999999977543
No 110
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=99.38 E-value=1.8e-12 Score=98.47 Aligned_cols=48 Identities=42% Similarity=0.659 Sum_probs=44.8
Q ss_pred ccCCCHHHHHHHHHHhCCCCCCce-EEEcCCcccchhhhhhcCCeEEEEc
Q 039449 170 VEKPDPRIYEIALERAGNIAPEEA-LHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 170 ~~kp~~~~~~~~~~~~~~~~~~~~-~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
..||++..++.++++++ ++++++ +||||++.+|+.+|+++|++++++.
T Consensus 186 ~~KP~~~~~~~~~~~~~-~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v~ 234 (236)
T TIGR01460 186 VGKPSPAIYRAALNLLQ-ARPERRDVMVGDNLRTDILGAKNAGFDTLLVL 234 (236)
T ss_pred ecCCCHHHHHHHHHHhC-CCCccceEEECCCcHHHHHHHHHCCCcEEEEe
Confidence 56999999999999999 998887 9999998679999999999999997
No 111
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=99.38 E-value=3.6e-13 Score=95.31 Aligned_cols=98 Identities=19% Similarity=0.349 Sum_probs=71.0
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeC-CCcchhhhhhhhcCCC----------CCcceeEeeeccccCccCCCHHHHHHH
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISN-AEYRYQDVILPALGVN----------QGTEWDFGVFSGLEGVEKPDPRIYEIA 181 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~-~~~~~~~~~l~~~gl~----------~~~~f~~~~~~~~~~~~kp~~~~~~~~ 181 (253)
+.+||++.++|+.|+.+|++++++|- .....++..|+.+++. . +|+..-+.. ..|..-|+.+
T Consensus 44 v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~--~F~~~eI~~-----gsK~~Hf~~i 116 (169)
T PF12689_consen 44 VSLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEIDDADGDGVPLIE--YFDYLEIYP-----GSKTTHFRRI 116 (169)
T ss_dssp E---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C----------C--CECEEEESS-----S-HHHHHHHH
T ss_pred EEeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCCccccccccchh--hcchhheec-----CchHHHHHHH
Confidence 58899999999999999999999994 5566789999999998 6 555533322 2677899999
Q ss_pred HHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 182 LERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 182 ~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
.+..| ++.++++||+|.. .++....+.|+.++++.+
T Consensus 117 ~~~tg-I~y~eMlFFDDe~-~N~~~v~~lGV~~v~v~~ 152 (169)
T PF12689_consen 117 HRKTG-IPYEEMLFFDDES-RNIEVVSKLGVTCVLVPD 152 (169)
T ss_dssp HHHH----GGGEEEEES-H-HHHHHHHTTT-EEEE-SS
T ss_pred HHhcC-CChhHEEEecCch-hcceeeEecCcEEEEeCC
Confidence 99999 9999999999999 789999999999999984
No 112
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=99.37 E-value=2.7e-12 Score=90.45 Aligned_cols=90 Identities=23% Similarity=0.290 Sum_probs=65.8
Q ss_pred CChHHHHHHHHHcCC--EEEEEeCCC-------cchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCC
Q 039449 117 PDSQPFLRWAREKGL--IVGIISNAE-------YRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGN 187 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~--~~~i~s~~~-------~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~ 187 (253)
|.+.+.++++++.+. +++|+||+. ...++.+-+.+|+.- .... ..|| ..+..+++.++
T Consensus 62 ~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIpv--------l~h~--~kKP--~~~~~i~~~~~- 128 (168)
T PF09419_consen 62 PEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIPV--------LRHR--AKKP--GCFREILKYFK- 128 (168)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCcE--------EEeC--CCCC--ccHHHHHHHHh-
Confidence 344455666767654 599999983 455666777788763 1111 3455 56667777775
Q ss_pred C-----CCCceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 188 I-----APEEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 188 ~-----~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
. +++++++|||.+.+|+.+|+..|+.+|++..
T Consensus 129 ~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~tilv~~ 165 (168)
T PF09419_consen 129 CQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTILVTD 165 (168)
T ss_pred hccCCCCchhEEEEcchHHHHHHHhhccCceEEEEec
Confidence 4 4999999999999999999999999999983
No 113
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.36 E-value=8.6e-13 Score=99.14 Aligned_cols=96 Identities=20% Similarity=0.120 Sum_probs=64.5
Q ss_pred EEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCC
Q 039449 133 VGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGM 212 (253)
Q Consensus 133 ~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~ 212 (253)
+++.+......+...++..++.. +... ...+....+..|..+++.+++.++ ++++++++|||+. ||+.|++.+|+
T Consensus 110 ~~~~~~~~~~~~~~~l~~~~~~~--~~~~-~~~ei~~~~~~K~~~i~~l~~~~~-i~~~~~i~iGDs~-ND~~ml~~ag~ 184 (215)
T TIGR01487 110 VIMREGKDVDEVREIIKERGLNL--VDSG-FAIHIMKKGVDKGVGVEKLKELLG-IKPEEVAAIGDSE-NDIDLFRVVGF 184 (215)
T ss_pred EEecCCccHHHHHHHHHhCCeEE--EecC-ceEEEecCCCChHHHHHHHHHHhC-CCHHHEEEECCCH-HHHHHHHhCCC
Confidence 34445545455555666655543 2111 111222334567789999999999 9999999999999 99999999999
Q ss_pred eEEEEcCCCCCChhhhhhcCCcccCC
Q 039449 213 HALLVDRFKTPDAKEWRKSGAIVLPD 238 (253)
Q Consensus 213 ~~i~~~~~~~~~~~~~~~~~~~~i~~ 238 (253)
..++-+. .+.+....++++++
T Consensus 185 ~vam~na-----~~~~k~~A~~v~~~ 205 (215)
T TIGR01487 185 KVAVANA-----DDQLKEIADYVTSN 205 (215)
T ss_pred eEEcCCc-----cHHHHHhCCEEcCC
Confidence 9888763 34445555656553
No 114
>PRK10976 putative hydrolase; Provisional
Probab=99.34 E-value=2.9e-12 Score=99.48 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=57.2
Q ss_pred ccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCC--cccCCHHH--HHHH
Q 039449 170 VEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGA--IVLPDLVA--VKEF 245 (253)
Q Consensus 170 ~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~--~~i~~l~e--l~~~ 245 (253)
..-.|..+++.+++.+| ++++++++|||+. ||+.|.+.+|.+.++-+. .+.+++..+ +++++-+| +..+
T Consensus 187 ~gvsKg~al~~l~~~lg-i~~~~viafGD~~-NDi~Ml~~ag~~vAm~NA-----~~~vK~~A~~~~v~~~n~edGVa~~ 259 (266)
T PRK10976 187 GGVSKGHALEAVAKKLG-YSLKDCIAFGDGM-NDAEMLSMAGKGCIMGNA-----HQRLKDLLPELEVIGSNADDAVPHY 259 (266)
T ss_pred CCCChHHHHHHHHHHcC-CCHHHeEEEcCCc-ccHHHHHHcCCCeeecCC-----cHHHHHhCCCCeecccCchHHHHHH
Confidence 34567899999999999 9999999999999 999999999999888763 234444443 45665544 6666
Q ss_pred Hhhhh
Q 039449 246 LTSEI 250 (253)
Q Consensus 246 l~~~~ 250 (253)
|++.+
T Consensus 260 l~~~~ 264 (266)
T PRK10976 260 LRKLY 264 (266)
T ss_pred HHHHh
Confidence 66543
No 115
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.33 E-value=3.2e-11 Score=93.79 Aligned_cols=83 Identities=10% Similarity=-0.032 Sum_probs=59.9
Q ss_pred cCccCCCHHHHHHHHHHhCCC---CCCceEEEcCCcccchhhhhhcCCeEEEEcCCCC-CChhhhhhcCCcccCC--HHH
Q 039449 168 EGVEKPDPRIYEIALERAGNI---APEEALHIGDSFRKDYVPAKSVGMHALLVDRFKT-PDAKEWRKSGAIVLPD--LVA 241 (253)
Q Consensus 168 ~~~~kp~~~~~~~~~~~~~~~---~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~-~~~~~~~~~~~~~i~~--l~e 241 (253)
....-.|..+++.+++.+| + ++++++.|||+. ||+.|.+.+|.+.++-+.... ...+......+++... -+.
T Consensus 182 ~~~g~sKg~al~~l~~~lg-i~~~~~~~viafGDs~-NDi~Ml~~ag~gvAM~~~~~~~~~l~~~~~~~~~~~~~~~~~g 259 (271)
T PRK03669 182 LDASAGKDQAANWLIATYQ-QLSGTRPTTLGLGDGP-NDAPLLDVMDYAVVVKGLNREGVHLQDDDPARVYRTQREGPEG 259 (271)
T ss_pred ecCCCCHHHHHHHHHHHHH-hhcCCCceEEEEcCCH-HHHHHHHhCCEEEEecCCCCCCcccccccCCceEeccCCCcHH
Confidence 3445678899999999999 9 999999999999 999999999999988752111 1122222234444443 346
Q ss_pred HHHHHhhhhhc
Q 039449 242 VKEFLTSEISA 252 (253)
Q Consensus 242 l~~~l~~~~~~ 252 (253)
+.+.|++.+++
T Consensus 260 ~~~~l~~~~~~ 270 (271)
T PRK03669 260 WREGLDHFFSA 270 (271)
T ss_pred HHHHHHHHHhc
Confidence 77888777665
No 116
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=99.33 E-value=1.2e-11 Score=91.30 Aligned_cols=89 Identities=22% Similarity=0.338 Sum_probs=63.9
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccc----cCc-cC----CCHHHHHHH---HHH
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGL----EGV-EK----PDPRIYEIA---LER 184 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~----~~~-~k----p~~~~~~~~---~~~ 184 (253)
|++.++++.++++|++++|+|++....++.+++.+|++....+...+.... .+. .. .|...++.+ ...
T Consensus 92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~~~~~ 171 (192)
T PF12710_consen 92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSNCGGKAEALKELYIRDEE 171 (192)
T ss_dssp TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCCCCcHHHHHHHHHHHhhc
Confidence 555599999999999999999999999999999999886222222221100 000 01 156666666 444
Q ss_pred hCCCCCCceEEEcCCcccchhhhh
Q 039449 185 AGNIAPEEALHIGDSFRKDYVPAK 208 (253)
Q Consensus 185 ~~~~~~~~~~~iGD~~~~Di~~a~ 208 (253)
+ .+.+.+++|||+. +|+.+++
T Consensus 172 -~-~~~~~~~~iGDs~-~D~~~lr 192 (192)
T PF12710_consen 172 -D-IDPDRVIAIGDSI-NDLPMLR 192 (192)
T ss_dssp -T-HTCCEEEEEESSG-GGHHHHH
T ss_pred -C-CCCCeEEEEECCH-HHHHHhC
Confidence 7 8899999999999 9999875
No 117
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=99.31 E-value=2.4e-11 Score=92.65 Aligned_cols=85 Identities=18% Similarity=0.200 Sum_probs=64.6
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcch---hhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCC
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRY---QDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIA 189 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 189 (253)
..++||+.+++++++++|++++++||..... ....++.+|+.. ..++.++.-. . .++|+.....+.+.++ +
T Consensus 117 a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~-~~~d~lllr~-~--~~~K~~rr~~I~~~y~-I- 190 (266)
T TIGR01533 117 AKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFPQ-ADEEHLLLKK-D--KSSKESRRQKVQKDYE-I- 190 (266)
T ss_pred CCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcCC-CCcceEEeCC-C--CCCcHHHHHHHHhcCC-E-
Confidence 4788999999999999999999999998554 346778889875 1234444433 2 2466777777777777 5
Q ss_pred CCceEEEcCCcccchhhh
Q 039449 190 PEEALHIGDSFRKDYVPA 207 (253)
Q Consensus 190 ~~~~~~iGD~~~~Di~~a 207 (253)
+++|||+. +|+..+
T Consensus 191 ---vl~vGD~~-~Df~~~ 204 (266)
T TIGR01533 191 ---VLLFGDNL-LDFDDF 204 (266)
T ss_pred ---EEEECCCH-HHhhhh
Confidence 89999999 899653
No 118
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=99.31 E-value=7.7e-12 Score=88.64 Aligned_cols=94 Identities=24% Similarity=0.304 Sum_probs=66.3
Q ss_pred CCChHHHHHHHHHcCCEEEEEeCCCcc--------------hhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHH
Q 039449 116 FPDSQPFLRWAREKGLIVGIISNAEYR--------------YQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIA 181 (253)
Q Consensus 116 ~~~~~~~l~~l~~~g~~~~i~s~~~~~--------------~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~ 181 (253)
.|++.+.|++|.+.|+.++|+||.... .+..+++.+++.- ...+.......+||.+-++..+
T Consensus 31 ~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l~ip~----~~~~a~~~d~~RKP~~GM~~~~ 106 (159)
T PF08645_consen 31 PPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKELGIPI----QVYAAPHKDPCRKPNPGMWEFA 106 (159)
T ss_dssp -TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHCTS-E----EEEECGCSSTTSTTSSHHHHHH
T ss_pred chhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHcCCce----EEEecCCCCCCCCCchhHHHHH
Confidence 358999999999999999999998332 1335556666652 2222233345789999999999
Q ss_pred HHHhCC---CCCCceEEEcCC-----------cccchhhhhhcCCeE
Q 039449 182 LERAGN---IAPEEALHIGDS-----------FRKDYVPAKSVGMHA 214 (253)
Q Consensus 182 ~~~~~~---~~~~~~~~iGD~-----------~~~Di~~a~~~G~~~ 214 (253)
++.++. ++.++++||||. - +|..-|.++|++.
T Consensus 107 ~~~~~~~~~id~~~Sf~VGDaagr~~~~~d~s~-~D~~fA~N~gi~f 152 (159)
T PF08645_consen 107 LKDYNDGVEIDLANSFYVGDAAGRSKKKKDFSD-SDRKFALNCGIKF 152 (159)
T ss_dssp CCCTSTT--S-CCC-EEEESSCHCTB-S--S---HHHHHHHHHT--E
T ss_pred HHhccccccccccceEEEeccCCCCCcccccCh-hHHHHHHHcCCcc
Confidence 999872 489999999996 4 7899999999984
No 119
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.28 E-value=9.3e-12 Score=96.55 Aligned_cols=75 Identities=19% Similarity=0.150 Sum_probs=56.5
Q ss_pred CccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHH--HHHHHH
Q 039449 169 GVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLV--AVKEFL 246 (253)
Q Consensus 169 ~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~--el~~~l 246 (253)
..+..|..+++.+++.++ ++++++++|||+. ||+.|.+.+|.+.++-+. .+.+....+++..+-+ .+...|
T Consensus 185 ~~g~~K~~al~~l~~~lg-i~~~~v~afGD~~-ND~~Ml~~ag~gvam~Na-----~~~~k~~A~~vt~~n~~~Gv~~~l 257 (264)
T COG0561 185 PKGVSKGYALQRLAKLLG-IKLEEVIAFGDST-NDIEMLEVAGLGVAMGNA-----DEELKELADYVTTSNDEDGVAEAL 257 (264)
T ss_pred cCCCchHHHHHHHHHHhC-CCHHHeEEeCCcc-ccHHHHHhcCeeeeccCC-----CHHHHhhCCcccCCccchHHHHHH
Confidence 345678899999999999 9999999999999 999999999999998763 2333444444444333 466666
Q ss_pred hhhh
Q 039449 247 TSEI 250 (253)
Q Consensus 247 ~~~~ 250 (253)
++.+
T Consensus 258 ~~~~ 261 (264)
T COG0561 258 EKLL 261 (264)
T ss_pred HHHh
Confidence 6543
No 120
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.27 E-value=6.2e-12 Score=97.95 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=56.3
Q ss_pred CccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCc--ccCCHHH--HHH
Q 039449 169 GVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAI--VLPDLVA--VKE 244 (253)
Q Consensus 169 ~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~--~i~~l~e--l~~ 244 (253)
..+-.|..+++.+++.+| ++++++++|||+. ||+.|.+.+|...++-+. .+.++...++ ++++.+| +..
T Consensus 184 ~~g~sKg~al~~l~~~~g-i~~~~v~afGD~~-NDi~Ml~~ag~~vAm~Na-----~~~vK~~A~~~~v~~~n~edGva~ 256 (272)
T PRK15126 184 PVGCNKGAALAVLSQHLG-LSLADCMAFGDAM-NDREMLGSVGRGFIMGNA-----MPQLRAELPHLPVIGHCRNQAVSH 256 (272)
T ss_pred cCCCChHHHHHHHHHHhC-CCHHHeEEecCCH-HHHHHHHHcCCceeccCC-----hHHHHHhCCCCeecCCCcchHHHH
Confidence 344578899999999999 9999999999999 999999999999888762 3344444432 5555443 566
Q ss_pred HHhhhh
Q 039449 245 FLTSEI 250 (253)
Q Consensus 245 ~l~~~~ 250 (253)
+|++.+
T Consensus 257 ~l~~~~ 262 (272)
T PRK15126 257 YLTHWL 262 (272)
T ss_pred HHHHHh
Confidence 665543
No 121
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.27 E-value=2.4e-11 Score=91.70 Aligned_cols=45 Identities=9% Similarity=0.065 Sum_probs=39.8
Q ss_pred ccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEE
Q 039449 170 VEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALL 216 (253)
Q Consensus 170 ~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~ 216 (253)
..-.|+.+++.+++.+| ++++++++|||+. ||+.|.+.+|.+.+.
T Consensus 176 ~~~~Kg~al~~l~~~lg-i~~~~vi~~GD~~-NDi~ml~~ag~~va~ 220 (221)
T TIGR02463 176 ASSSKGKAANWLKATYN-QPDVKTLGLGDGP-NDLPLLEVADYAVVI 220 (221)
T ss_pred CCCCHHHHHHHHHHHhC-CCCCcEEEECCCH-HHHHHHHhCCceEEe
Confidence 33456778999999999 9999999999999 999999999988764
No 122
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=4.9e-10 Score=78.22 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=85.2
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecc------------------ccCccCCC
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSG------------------LEGVEKPD 174 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~------------------~~~~~kp~ 174 (253)
+.+.||.++++..+++++++++++|++...++..+++..+-..-.+.-. +.++ ..|..||
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~id-i~sn~~~ih~dg~h~i~~~~ds~fG~dK~- 149 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCID-IVSNNDYIHIDGQHSIKYTDDSQFGHDKS- 149 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeE-EeecCceEcCCCceeeecCCccccCCCcc-
Confidence 4788999999999999999999999999999998888775211001111 1111 1223344
Q ss_pred HHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhhh
Q 039449 175 PRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSEI 250 (253)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~~ 250 (253)
..++.+. -+++.++|+||+. +|+.+|+.+..-.+--. --..-..+......++++.|+..-+++.+
T Consensus 150 -----~vI~~l~-e~~e~~fy~GDsv-sDlsaaklsDllFAK~~---L~nyc~eqn~~f~~fe~F~eIlk~iekvl 215 (220)
T COG4359 150 -----SVIHELS-EPNESIFYCGDSV-SDLSAAKLSDLLFAKDD---LLNYCREQNLNFLEFETFYEILKEIEKVL 215 (220)
T ss_pred -----hhHHHhh-cCCceEEEecCCc-ccccHhhhhhhHhhHHH---HHHHHHHcCCCCcccccHHHHHHHHHHHH
Confidence 4566666 6778899999999 89999999876543110 00011112334578888999888887765
No 123
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.25 E-value=1.5e-11 Score=95.66 Aligned_cols=74 Identities=18% Similarity=0.155 Sum_probs=58.5
Q ss_pred CccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHH--HHHHH
Q 039449 169 GVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVA--VKEFL 246 (253)
Q Consensus 169 ~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~e--l~~~l 246 (253)
..+-.|..+++.+++.+| ++++++++|||+. ||++|.+.+|.+.++-+. .+.+....++++++-++ +..+|
T Consensus 192 ~~gvsKg~al~~l~~~~g-i~~~~v~afGD~~-NDi~Ml~~ag~~vAm~NA-----~~~vK~~A~~vt~~n~~dGva~~i 264 (270)
T PRK10513 192 DKRVNKGTGVKSLAEHLG-IKPEEVMAIGDQE-NDIAMIEYAGVGVAMGNA-----IPSVKEVAQFVTKSNLEDGVAFAI 264 (270)
T ss_pred CCCCChHHHHHHHHHHhC-CCHHHEEEECCch-hhHHHHHhCCceEEecCc-----cHHHHHhcCeeccCCCcchHHHHH
Confidence 445678899999999999 9999999999999 999999999999888763 34455666677765543 55665
Q ss_pred hhh
Q 039449 247 TSE 249 (253)
Q Consensus 247 ~~~ 249 (253)
++.
T Consensus 265 ~~~ 267 (270)
T PRK10513 265 EKY 267 (270)
T ss_pred HHH
Confidence 543
No 124
>PLN02887 hydrolase family protein
Probab=99.17 E-value=2.1e-10 Score=96.79 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=57.9
Q ss_pred CccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHH--HHHHH
Q 039449 169 GVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVA--VKEFL 246 (253)
Q Consensus 169 ~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~e--l~~~l 246 (253)
..+-.|..+++.+++.+| ++++++++|||+. ||+.|.+.+|.+.++-+. .+.++...++++.+.+| +..+|
T Consensus 503 p~gvSKG~ALk~L~e~lG-I~~eeviAFGDs~-NDIeMLe~AG~gVAMgNA-----~eeVK~~Ad~VT~sNdEDGVA~aL 575 (580)
T PLN02887 503 PPGTSKGNGVKMLLNHLG-VSPDEIMAIGDGE-NDIEMLQLASLGVALSNG-----AEKTKAVADVIGVSNDEDGVADAI 575 (580)
T ss_pred cCCCCHHHHHHHHHHHcC-CCHHHEEEEecch-hhHHHHHHCCCEEEeCCC-----CHHHHHhCCEEeCCCCcCHHHHHH
Confidence 345678899999999999 9999999999999 999999999999988763 34455566667765543 55555
Q ss_pred hh
Q 039449 247 TS 248 (253)
Q Consensus 247 ~~ 248 (253)
++
T Consensus 576 ek 577 (580)
T PLN02887 576 YR 577 (580)
T ss_pred HH
Confidence 54
No 125
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.13 E-value=1.3e-10 Score=88.40 Aligned_cols=58 Identities=14% Similarity=0.115 Sum_probs=53.6
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHH
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPR 176 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~ 176 (253)
|++.++|++|+++|++++|+|++....+...++.+|+.. +|+.++++++....||+++
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~--YFdvIIs~Gdv~~~kp~~e 206 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDR--YFDIIISGGHKAEEYSTMS 206 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCc--ccCEEEECCccccCCCCcc
Confidence 789999999999999999999999999999999999998 9999999988888887765
No 126
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.09 E-value=2.6e-10 Score=96.71 Aligned_cols=115 Identities=11% Similarity=0.105 Sum_probs=87.7
Q ss_pred ccCCChHHHHHHHHHcCC-EEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCc
Q 039449 114 TVFPDSQPFLRWAREKGL-IVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEE 192 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~-~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 192 (253)
.++|++.+.+++|+++|+ +++++||.....++..++.+|++. +|... . +.+| ..++++++ .+.++
T Consensus 362 ~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~--~f~~~-----~--p~~K----~~~i~~l~-~~~~~ 427 (536)
T TIGR01512 362 EPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE--VHAEL-----L--PEDK----LEIVKELR-EKYGP 427 (536)
T ss_pred cchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh--hhhcc-----C--cHHH----HHHHHHHH-hcCCE
Confidence 678999999999999999 999999999999999999999987 54322 1 1222 34666666 66789
Q ss_pred eEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCccc--CCHHHHHHHHh
Q 039449 193 ALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVL--PDLVAVKEFLT 247 (253)
Q Consensus 193 ~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i--~~l~el~~~l~ 247 (253)
++||||+. ||+.+++++|+...+-. .. .+......++++ +++.++.+++.
T Consensus 428 v~~vGDg~-nD~~al~~A~vgia~g~---~~-~~~~~~~ad~vl~~~~l~~l~~~i~ 479 (536)
T TIGR01512 428 VAMVGDGI-NDAPALAAADVGIAMGA---SG-SDVAIETADVVLLNDDLSRLPQAIR 479 (536)
T ss_pred EEEEeCCH-HHHHHHHhCCEEEEeCC---Cc-cHHHHHhCCEEEECCCHHHHHHHHH
Confidence 99999999 99999999997444421 11 222234566666 89999988775
No 127
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.08 E-value=5.6e-10 Score=95.26 Aligned_cols=114 Identities=11% Similarity=0.129 Sum_probs=85.9
Q ss_pred ccCCChHHHHHHHHHcC-CEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCc
Q 039449 114 TVFPDSQPFLRWAREKG-LIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEE 192 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g-~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 192 (253)
.++||+.+++++|+++| ++++++||.....++.+++++|+.. +|..+ .. .+|+ .++++++ ..+++
T Consensus 384 ~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~~--~f~~~-----~p--~~K~----~~v~~l~-~~~~~ 449 (556)
T TIGR01525 384 QLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGIDE--VHAEL-----LP--EDKL----AIVKELQ-EEGGV 449 (556)
T ss_pred cchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCCe--eeccC-----CH--HHHH----HHHHHHH-HcCCE
Confidence 68899999999999999 9999999999999999999999987 55432 11 1222 4566665 56679
Q ss_pred eEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccC--CHHHHHHHHh
Q 039449 193 ALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLP--DLVAVKEFLT 247 (253)
Q Consensus 193 ~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~--~l~el~~~l~ 247 (253)
|+||||+. ||+.+++++|+...+- .. .+......++++. ++..+.++++
T Consensus 450 v~~vGDg~-nD~~al~~A~vgia~g----~~-~~~~~~~Ad~vi~~~~~~~l~~~i~ 500 (556)
T TIGR01525 450 VAMVGDGI-NDAPALAAADVGIAMG----AG-SDVAIEAADIVLLNDDLSSLPTAID 500 (556)
T ss_pred EEEEECCh-hHHHHHhhCCEeEEeC----CC-CHHHHHhCCEEEeCCCHHHHHHHHH
Confidence 99999999 9999999999554442 22 2222344665555 7888888775
No 128
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.04 E-value=2.4e-10 Score=88.26 Aligned_cols=63 Identities=16% Similarity=0.185 Sum_probs=50.2
Q ss_pred ccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCH
Q 039449 170 VEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDL 239 (253)
Q Consensus 170 ~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l 239 (253)
..-.|..+++.+++.++ ++++++++|||+. ||+.|++.+|++.++.+. .+.+.....+++++-
T Consensus 185 ~~~~K~~~i~~~~~~~~-~~~~~~~~~GD~~-nD~~m~~~~~~~~a~~na-----~~~~k~~a~~~~~~n 247 (256)
T TIGR00099 185 KGVSKGSALQSLAEALG-ISLEDVIAFGDGM-NDIEMLEAAGYGVAMGNA-----DEELKALADYVTDSN 247 (256)
T ss_pred CCCChHHHHHHHHHHcC-CCHHHEEEeCCcH-HhHHHHHhCCceeEecCc-----hHHHHHhCCEEecCC
Confidence 44678899999999999 9999999999999 999999999999887542 233444455565543
No 129
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.01 E-value=2.2e-09 Score=82.54 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=42.7
Q ss_pred cCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 168 EGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 168 ~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
.....+|..+++.+++.++ ++++++++|||+. ||+.|++.+|..++.+.
T Consensus 162 ~~~~~~K~~al~~l~~~~~-i~~~~~i~~GD~~-ND~~ml~~~~~~~va~~ 210 (249)
T TIGR01485 162 LPQGSGKGQALQYLLQKLA-MEPSQTLVCGDSG-NDIELFEIGSVRGVIVS 210 (249)
T ss_pred EeCCCChHHHHHHHHHHcC-CCccCEEEEECCh-hHHHHHHccCCcEEEEC
Confidence 4456889999999999999 9999999999999 99999999766666654
No 130
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=99.00 E-value=8.2e-10 Score=81.27 Aligned_cols=110 Identities=18% Similarity=0.195 Sum_probs=67.1
Q ss_pred CCccCCChHHHHHHHHHcCCEEEEEeCCCcch----h---hhhhhhc-CCCCCcceeEeeeccccCccCCCHHHHHHHHH
Q 039449 112 PYTVFPDSQPFLRWAREKGLIVGIISNAEYRY----Q---DVILPAL-GVNQGTEWDFGVFSGLEGVEKPDPRIYEIALE 183 (253)
Q Consensus 112 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~----~---~~~l~~~-gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~ 183 (253)
..+|.||+.+.|++|.+.|+.++++|...... . ...++.. |.. .++.++++.. |.
T Consensus 71 ~l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i---~~~~~~~~~~----K~---------- 133 (191)
T PF06941_consen 71 NLPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFI---PYDNLIFTGD----KT---------- 133 (191)
T ss_dssp T--B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHH---HHCCEEEESS----GG----------
T ss_pred CCCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCC---chheEEEecC----CC----------
Confidence 35889999999999999998888888876651 2 2233332 321 2233444322 21
Q ss_pred HhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhh
Q 039449 184 RAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 184 ~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~ 249 (253)
.++ .+ ++|+|++ ..+..+...|+++++++.+- +. .. ....++.||+|+.+.+.+.
T Consensus 134 ~v~-~D----vlIDD~~-~n~~~~~~~g~~~iLfd~p~-Nr--~~--~~~~Rv~~W~ei~~~i~~~ 188 (191)
T PF06941_consen 134 LVG-GD----VLIDDRP-HNLEQFANAGIPVILFDQPY-NR--DE--SNFPRVNNWEEIEDLILSS 188 (191)
T ss_dssp GC---S----EEEESSS-HHHSS-SSESSEEEEE--GG-GT--T----TSEEE-STTSHHHHHHHT
T ss_pred eEe-cc----EEecCCh-HHHHhccCCCceEEEEcCCC-CC--CC--CCCccCCCHHHHHHHHHhc
Confidence 123 33 8999999 68999999999999998422 11 11 1568999999999888553
No 131
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=98.96 E-value=2.1e-09 Score=81.91 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=43.6
Q ss_pred cCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 168 EGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 168 ~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
.....+|+.+++.++++++ ++++++++|||+. ||+.|++.+|...++-+
T Consensus 154 ~~~~~~K~~al~~l~~~~g-~~~~~~i~~GD~~-nD~~ml~~~~~~iav~n 202 (236)
T TIGR02471 154 LPLRASKGLALRYLSYRWG-LPLEQILVAGDSG-NDEEMLRGLTLGVVVGN 202 (236)
T ss_pred eeCCCChHHHHHHHHHHhC-CCHHHEEEEcCCc-cHHHHHcCCCcEEEEcC
Confidence 3445789999999999999 9999999999999 99999999998887644
No 132
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=98.95 E-value=2.6e-09 Score=82.20 Aligned_cols=63 Identities=22% Similarity=0.296 Sum_probs=50.5
Q ss_pred CCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHH
Q 039449 172 KPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVA 241 (253)
Q Consensus 172 kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~e 241 (253)
-.|..+++.+++.++ ++++++++|||+. ||+.|.+.+|...++-+. .+.+.....+++++-.+
T Consensus 185 vsK~~ai~~l~~~~~-i~~~~~~~~GD~~-ND~~Ml~~~~~~~am~na-----~~~~k~~a~~i~~~~~~ 247 (254)
T PF08282_consen 185 VSKGSAIKYLLEYLG-ISPEDIIAFGDSE-NDIEMLELAGYSVAMGNA-----TPELKKAADYITPSNND 247 (254)
T ss_dssp SSHHHHHHHHHHHHT-TSGGGEEEEESSG-GGHHHHHHSSEEEEETTS------HHHHHHSSEEESSGTC
T ss_pred CCHHHHHHHHhhhcc-cccceeEEeeccc-ccHhHHhhcCeEEEEcCC-----CHHHHHhCCEEecCCCC
Confidence 567899999999999 9999999999999 999999999999887552 34555566666655443
No 133
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=98.92 E-value=1.1e-08 Score=78.94 Aligned_cols=49 Identities=12% Similarity=0.102 Sum_probs=44.2
Q ss_pred CccCCCHHHHHHHHHHhCCCC--CCceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 169 GVEKPDPRIYEIALERAGNIA--PEEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 169 ~~~kp~~~~~~~~~~~~~~~~--~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
.....|..+++.+++.++ ++ .+++++|||+. ||+.|.+.+|.+.++-+.
T Consensus 172 ~~~~~Kg~ai~~l~~~~~-i~~~~~~~~a~GD~~-ND~~Ml~~ag~~vam~Na 222 (256)
T TIGR01486 172 GAGSDKGKAANALKQFYN-QPGGAIKVVGLGDSP-NDLPLLEVVDLAVVVPGP 222 (256)
T ss_pred cCCCCHHHHHHHHHHHHh-hcCCCceEEEEcCCH-hhHHHHHHCCEEEEeCCC
Confidence 345678889999999999 99 99999999999 999999999999999773
No 134
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.91 E-value=7.7e-09 Score=88.26 Aligned_cols=113 Identities=12% Similarity=0.168 Sum_probs=83.9
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
+++|++.+++++|++.|++++++|+.....++.+++.+|++ +| +... +++| ..+++++. .++++|
T Consensus 405 ~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~---~~-----~~~~--p~~K----~~~v~~l~-~~~~~v 469 (562)
T TIGR01511 405 QLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN---VR-----AEVL--PDDK----AALIKELQ-EKGRVV 469 (562)
T ss_pred cccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc---EE-----ccCC--hHHH----HHHHHHHH-HcCCEE
Confidence 57899999999999999999999999999999999999995 22 2211 1233 34555555 567899
Q ss_pred EEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCccc--CCHHHHHHHHh
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVL--PDLVAVKEFLT 247 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i--~~l~el~~~l~ 247 (253)
+||||+. ||+.+++++|+...+- .+ . +......++++ +++.++..++.
T Consensus 470 ~~VGDg~-nD~~al~~A~vgia~g--~g--~-~~a~~~Advvl~~~~l~~l~~~i~ 519 (562)
T TIGR01511 470 AMVGDGI-NDAPALAQADVGIAIG--AG--T-DVAIEAADVVLMRNDLNDVATAID 519 (562)
T ss_pred EEEeCCC-ccHHHHhhCCEEEEeC--Cc--C-HHHHhhCCEEEeCCCHHHHHHHHH
Confidence 9999999 9999999999864432 22 1 22233456666 58888887775
No 135
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=98.90 E-value=1.2e-09 Score=77.95 Aligned_cols=98 Identities=14% Similarity=0.063 Sum_probs=82.7
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
...||+.++|++|.+. +.++|.|++....++.+++.++... .+|..+++.+.....+++ +.+.++.+| .+++++
T Consensus 42 ~~RPgl~eFL~~l~~~-yei~I~Ts~~~~yA~~il~~ldp~~-~~f~~~l~r~~~~~~~~~---~~K~L~~l~-~~~~~v 115 (162)
T TIGR02251 42 FKRPHVDEFLERVSKW-YELVIFTASLEEYADPVLDILDRGG-KVISRRLYRESCVFTNGK---YVKDLSLVG-KDLSKV 115 (162)
T ss_pred EECCCHHHHHHHHHhc-CEEEEEcCCcHHHHHHHHHHHCcCC-CEEeEEEEccccEEeCCC---EEeEchhcC-CChhhE
Confidence 6679999999999988 9999999999999999999998753 367777776665555555 567788899 999999
Q ss_pred EEEcCCcccchhhhhhcCCeEEEEc
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
++|||++ .++.++.+.|+.+....
T Consensus 116 IiVDD~~-~~~~~~~~NgI~i~~f~ 139 (162)
T TIGR02251 116 IIIDNSP-YSYSLQPDNAIPIKSWF 139 (162)
T ss_pred EEEeCCh-hhhccCccCEeecCCCC
Confidence 9999999 79999999998876554
No 136
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=98.86 E-value=5.4e-08 Score=64.23 Aligned_cols=121 Identities=10% Similarity=0.138 Sum_probs=96.3
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCc
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEE 192 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 192 (253)
-.+++.+.+.+++|++. ..++|.|+.....+...++-.|++- +.++.. .++++-..+++.++ -+.+.
T Consensus 29 Gklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~----~rv~a~-------a~~e~K~~ii~eLk-k~~~k 95 (152)
T COG4087 29 GKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPV----ERVFAG-------ADPEMKAKIIRELK-KRYEK 95 (152)
T ss_pred cEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCce----eeeecc-------cCHHHHHHHHHHhc-CCCcE
Confidence 37889999999999999 9999999999999998999998875 332221 23467778899998 66689
Q ss_pred eEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhh
Q 039449 193 ALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 193 ~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~ 249 (253)
|+||||.. ||+.+.+++.+..+-+...+ .++......++++.+..|+.+++...
T Consensus 96 ~vmVGnGa-ND~laLr~ADlGI~tiq~e~--v~~r~l~~ADvvik~i~e~ldl~~~~ 149 (152)
T COG4087 96 VVMVGNGA-NDILALREADLGICTIQQEG--VPERLLLTADVVLKEIAEILDLLKDT 149 (152)
T ss_pred EEEecCCc-chHHHhhhcccceEEeccCC--cchHHHhhchhhhhhHHHHHHHhhcc
Confidence 99999999 99999999988876665322 23334456789999999999988654
No 137
>KOG2630 consensus Enolase-phosphatase E-1 [Amino acid transport and metabolism]
Probab=98.85 E-value=3.5e-07 Score=66.55 Aligned_cols=126 Identities=18% Similarity=0.120 Sum_probs=93.9
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccc-cCccCCCHHHHHHHHHHhCCCCCCc
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGL-EGVEKPDPRIYEIALERAGNIAPEE 192 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~-~~~~kp~~~~~~~~~~~~~~~~~~~ 192 (253)
.+++++.+.++..+..|++++|.|.++...+..+..+.+-.+ .-..+-..-+ .-..|...+.|..+.+.+| .++.+
T Consensus 123 ~v~aDv~~a~e~w~~~g~~vyIYSSgsv~AqKllfg~s~~gd--l~~y~~gyfDt~iG~K~e~~sy~~I~~~Ig-~s~~e 199 (254)
T KOG2630|consen 123 HVYADVLPAIERWSGEGVRVYIYSSGSVAAQKLLFGYSDAGD--LRKYISGYFDTTIGLKVESQSYKKIGHLIG-KSPRE 199 (254)
T ss_pred cccchhHHHHHHHhhcCceEEEEcCCcHHHHHHHHcccCcch--HHHHhhhhhhccccceehhHHHHHHHHHhC-CChhh
Confidence 678999999999999999999999999988777666554322 1111111111 1223667789999999999 99999
Q ss_pred eEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHH
Q 039449 193 ALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVK 243 (253)
Q Consensus 193 ~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~ 243 (253)
++|.-|-+ ....+|+.+|+.+.++.++|.....+-.....-++.+++.|.
T Consensus 200 iLfLTd~~-~Ea~aa~~aGl~a~l~~rPgna~l~dd~~~~y~~i~~F~~l~ 249 (254)
T KOG2630|consen 200 ILFLTDVP-REAAAARKAGLQAGLVSRPGNAPLPDDAKVEYCVIWSFEILE 249 (254)
T ss_pred eEEeccCh-HHHHHHHhcccceeeeecCCCCCCCcccccceeeeccchhhh
Confidence 99999999 799999999999999988776654432222345777777664
No 138
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=98.84 E-value=5.3e-08 Score=74.56 Aligned_cols=46 Identities=22% Similarity=0.177 Sum_probs=37.3
Q ss_pred cCCCHHHHHHHHHHhCCCC--CCceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 171 EKPDPRIYEIALERAGNIA--PEEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 171 ~kp~~~~~~~~~~~~~~~~--~~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
..+|.++++.+.+.+. -. +-.++.+|||+ ||+.|.+.+-++.|.-.
T Consensus 206 ~~dKg~A~~~L~~~y~-~~~~~~~tiaLGDsp-ND~~mLe~~D~~vvi~~ 253 (302)
T PRK12702 206 SLPGEQAVQLLLDCYQ-RHLGPIKALGIGCSP-PDLAFLRWSEQKVVLPS 253 (302)
T ss_pred CCCHHHHHHHHHHHHH-hccCCceEEEecCCh-hhHHHHHhCCeeEEecC
Confidence 3467788888888887 33 34799999999 99999999999877644
No 139
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.84 E-value=1.6e-08 Score=90.33 Aligned_cols=115 Identities=13% Similarity=0.146 Sum_probs=88.2
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
.++|++.+.++.|++.|++++++|+.....++.+.+.+|++. +|.. .. |+.-..+++.++ .+++++
T Consensus 650 ~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~~--~~~~-----~~------p~~K~~~i~~l~-~~~~~v 715 (834)
T PRK10671 650 PLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGIDE--VIAG-----VL------PDGKAEAIKRLQ-SQGRQV 715 (834)
T ss_pred cchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCE--EEeC-----CC------HHHHHHHHHHHh-hcCCEE
Confidence 568999999999999999999999999999999999999986 4432 11 233345777787 778899
Q ss_pred EEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcC-CcccCCHHHHHHHHh
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSG-AIVLPDLVAVKEFLT 247 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~-~~~i~~l~el~~~l~ 247 (253)
+||||+. ||+.+++++|+..++-+ + ......... .+...++++|..+++
T Consensus 716 ~~vGDg~-nD~~al~~Agvgia~g~--g--~~~a~~~ad~vl~~~~~~~i~~~i~ 765 (834)
T PRK10671 716 AMVGDGI-NDAPALAQADVGIAMGG--G--SDVAIETAAITLMRHSLMGVADALA 765 (834)
T ss_pred EEEeCCH-HHHHHHHhCCeeEEecC--C--CHHHHHhCCEEEecCCHHHHHHHHH
Confidence 9999999 99999999999665532 2 222222222 256678999988886
No 140
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=98.83 E-value=1.7e-08 Score=77.27 Aligned_cols=91 Identities=19% Similarity=0.131 Sum_probs=73.7
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhh--hhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQD--VILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPE 191 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~--~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 191 (253)
.++||+.++|++|+++|++++++||+...... ..++.+|+.. .+|+.+++++.... ..+..++++++ .+++
T Consensus 24 ~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~-~~~~~Ii~s~~~~~-----~~l~~~~~~~~-~~~~ 96 (242)
T TIGR01459 24 HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINA-DLPEMIISSGEIAV-----QMILESKKRFD-IRNG 96 (242)
T ss_pred ccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCc-cccceEEccHHHHH-----HHHHhhhhhcc-CCCc
Confidence 67899999999999999999999998887655 7889999862 15777777765543 46667778888 8899
Q ss_pred ceEEEcCCcccchhhhhhcCC
Q 039449 192 EALHIGDSFRKDYVPAKSVGM 212 (253)
Q Consensus 192 ~~~~iGD~~~~Di~~a~~~G~ 212 (253)
++++|||+. .|+.....+|.
T Consensus 97 ~~~~vGd~~-~d~~~~~~~~~ 116 (242)
T TIGR01459 97 IIYLLGHLE-NDIINLMQCYT 116 (242)
T ss_pred eEEEeCCcc-cchhhhcCCCc
Confidence 999999999 79887765554
No 141
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=98.83 E-value=2.5e-08 Score=89.49 Aligned_cols=127 Identities=11% Similarity=0.089 Sum_probs=95.6
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCc----------------cCCCHHH
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGV----------------EKPDPRI 177 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~----------------~kp~~~~ 177 (253)
+++|++.+.++.|++.|++++++|+.....+..+.+..|+.. .+..++...+... ..+.|+-
T Consensus 528 p~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~--~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~~P~~ 605 (884)
T TIGR01522 528 PPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPS--KTSQSVSGEKLDAMDDQQLSQIVPKVAVFARASPEH 605 (884)
T ss_pred cchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC--CCCceeEhHHhHhCCHHHHHHHhhcCeEEEECCHHH
Confidence 568999999999999999999999999999999999999986 4444433333221 1355666
Q ss_pred HHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCccc--CCHHHHHHHHhh
Q 039449 178 YEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVL--PDLVAVKEFLTS 248 (253)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i--~~l~el~~~l~~ 248 (253)
-..+.+.+. -..+.+.|+||+. ||..++++|++...+-. ...+.-...+++++ +++..+...++.
T Consensus 606 K~~iv~~lq-~~g~~v~mvGDGv-ND~pAl~~AdVGia~g~----~g~~va~~aaDivl~dd~~~~i~~~i~~ 672 (884)
T TIGR01522 606 KMKIVKALQ-KRGDVVAMTGDGV-NDAPALKLADIGVAMGQ----TGTDVAKEAADMILTDDDFATILSAIEE 672 (884)
T ss_pred HHHHHHHHH-HCCCEEEEECCCc-ccHHHHHhCCeeEecCC----CcCHHHHHhcCEEEcCCCHHHHHHHHHH
Confidence 677777777 6668899999999 99999999997655421 11222234567777 679999888764
No 142
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.80 E-value=3e-08 Score=64.72 Aligned_cols=84 Identities=20% Similarity=0.174 Sum_probs=54.4
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcch---hhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRY---QDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAP 190 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 190 (253)
.+.||+.+++++|+++|++++++||++... ....++.+|+.- -.+.++++.. +....+++.. ..
T Consensus 14 ~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~--~~~~i~ts~~---------~~~~~l~~~~--~~ 80 (101)
T PF13344_consen 14 EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV--DEDEIITSGM---------AAAEYLKEHK--GG 80 (101)
T ss_dssp EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT----GGGEEEHHH---------HHHHHHHHHT--TS
T ss_pred CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC--CcCEEEChHH---------HHHHHHHhcC--CC
Confidence 567999999999999999999999998654 345567788875 3344444433 3334444422 35
Q ss_pred CceEEEcCCcccchhhhhhcCC
Q 039449 191 EEALHIGDSFRKDYVPAKSVGM 212 (253)
Q Consensus 191 ~~~~~iGD~~~~Di~~a~~~G~ 212 (253)
..++++|-.. ....++.+|+
T Consensus 81 ~~v~vlG~~~--l~~~l~~~G~ 100 (101)
T PF13344_consen 81 KKVYVLGSDG--LREELREAGF 100 (101)
T ss_dssp SEEEEES-HH--HHHHHHHTTE
T ss_pred CEEEEEcCHH--HHHHHHHcCC
Confidence 6888888764 5677777775
No 143
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=98.79 E-value=8.6e-08 Score=81.47 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=41.6
Q ss_pred cCCCHHHHHHHHHHhCCCCCCceEEE--cCCcccchhhhhhcCCeEEEEc
Q 039449 171 EKPDPRIYEIALERAGNIAPEEALHI--GDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 171 ~kp~~~~~~~~~~~~~~~~~~~~~~i--GD~~~~Di~~a~~~G~~~i~~~ 218 (253)
.-.|..+++.+++.++ ++.++++.| ||+. ||+.|.+.+|.+.++-.
T Consensus 611 gvdKG~AL~~L~e~~g-I~~~eViafalGDs~-NDisMLe~Ag~gVAM~~ 658 (694)
T PRK14502 611 GNDKGKAIKILNELFR-LNFGNIHTFGLGDSE-NDYSMLETVDSPILVQR 658 (694)
T ss_pred CCCHHHHHHHHHHHhC-CCccceEEEEcCCcH-hhHHHHHhCCceEEEcC
Confidence 4567799999999999 999999999 9999 99999999999988855
No 144
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.76 E-value=2.6e-08 Score=76.12 Aligned_cols=85 Identities=19% Similarity=0.209 Sum_probs=64.4
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCcc-------------------------
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVE------------------------- 171 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~------------------------- 171 (253)
|++.++|.+|+++|++++|+||+....+...++.+|+.. +|+.++.++.....
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~--yFDvII~~g~i~~k~~~~~~~d~~~~~~~~~~~f~~d~~ 228 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEG--YFDIIICGGRKAGEYSRRVIVDNKYKMVFVKKPFYLDVT 228 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCc--cccEEEECCCcccccccceeecccceeEEecCceeEeCC
Confidence 788999999999999999999999999999999999998 88877776653211
Q ss_pred ----CC-CHHHHHHHHHHhCCCCC-CceEEEcCCcccch
Q 039449 172 ----KP-DPRIYEIALERAGNIAP-EEALHIGDSFRKDY 204 (253)
Q Consensus 172 ----kp-~~~~~~~~~~~~~~~~~-~~~~~iGD~~~~Di 204 (253)
-| +|......+++.| +.- +.+..|+|-..||+
T Consensus 229 ~~~~lPKSprvVl~yL~~~g-vn~~KtiTLVDDl~~Nn~ 266 (303)
T PHA03398 229 DVKNLPKSPRVVLWYLRKKG-VNYFKTITLVDDLKSNNY 266 (303)
T ss_pred cccCCCCCCeehHHHHHHcC-cceeccEEEeccCcccCc
Confidence 11 3555556666666 543 45666777766655
No 145
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=98.72 E-value=1.3e-07 Score=66.95 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=61.4
Q ss_pred cCCChHHHHHHHHHcCCEEEEEeCCCcchhh---hhhhh-----cCCCCCcceeEeeecccc---------CccCC---C
Q 039449 115 VFPDSQPFLRWAREKGLIVGIISNAEYRYQD---VILPA-----LGVNQGTEWDFGVFSGLE---------GVEKP---D 174 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~---~~l~~-----~gl~~~~~f~~~~~~~~~---------~~~kp---~ 174 (253)
+.|++.+++++++++|++++++|+.+..... ..++. .++.. ..++.+... -..+| |
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~----g~li~~~g~~~~~~~~e~i~~~~~~~K 103 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPH----GPVLLSPDRLFAALHREVISKKPEVFK 103 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCC----ceEEEcCCcchhhhhcccccCCHHHHH
Confidence 3478999999999999999999999887663 55555 23432 122222221 12233 4
Q ss_pred HHHHHHHHHHhCCCCCCc-eEEEcCCcccchhhhhhcCCeE
Q 039449 175 PRIYEIALERAGNIAPEE-ALHIGDSFRKDYVPAKSVGMHA 214 (253)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~-~~~iGD~~~~Di~~a~~~G~~~ 214 (253)
.+.++.+.+.+. -.... ++.+||+. +|+.+=+++|++.
T Consensus 104 ~~~l~~i~~~~~-~~~~~f~~~~gn~~-~D~~~y~~~gi~~ 142 (157)
T smart00775 104 IACLRDIKSLFP-PQGNPFYAGFGNRI-TDVISYSAVGIPP 142 (157)
T ss_pred HHHHHHHHHhcC-CCCCCEEEEeCCCc-hhHHHHHHcCCCh
Confidence 556666665553 22233 34588889 9999999999976
No 146
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=98.71 E-value=1.2e-07 Score=71.48 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=36.3
Q ss_pred cCCCHHHHHHHHHHhCCC--CCCceEEEcCCcccchhhhhhcCCeEE
Q 039449 171 EKPDPRIYEIALERAGNI--APEEALHIGDSFRKDYVPAKSVGMHAL 215 (253)
Q Consensus 171 ~kp~~~~~~~~~~~~~~~--~~~~~~~iGD~~~~Di~~a~~~G~~~i 215 (253)
.-.|+.+++.+++.++ + +++++++|||+. ||+.|.+.+|++.+
T Consensus 179 ~~sK~~al~~l~~~~~-~~~~~~~~i~~GD~~-nD~~ml~~ag~~v~ 223 (225)
T TIGR02461 179 GSDKGKAIKRLLDLYK-LRPGAIESVGLGDSE-NDFPMFEVVDLAFL 223 (225)
T ss_pred CCCHHHHHHHHHHHhc-cccCcccEEEEcCCH-HHHHHHHhCCCcEe
Confidence 3445688888888887 5 677999999999 99999999999765
No 147
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=98.71 E-value=2.2e-07 Score=69.20 Aligned_cols=97 Identities=16% Similarity=0.180 Sum_probs=63.1
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcch---hhhhhhhcCCCCCcceeEeeeccccCccCC----CHHHHHHHHHHh
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRY---QDVILPALGVNQGTEWDFGVFSGLEGVEKP----DPRIYEIALERA 185 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp----~~~~~~~~~~~~ 185 (253)
.++.|++.++++.++++|++++++|+.+... +...|...|+.. + +.++.-......++ |.+...++. .-
T Consensus 119 apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~--~-~~LiLR~~~d~~~~~~~yKs~~R~~l~-~~ 194 (229)
T TIGR01675 119 APALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTG--W-KHLILRGLEDSNKTVVTYKSEVRKSLM-EE 194 (229)
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCC--c-CeeeecCCCCCCchHhHHHHHHHHHHH-hC
Confidence 3778999999999999999999999998766 556677788875 2 44444332222232 222222222 22
Q ss_pred CCCCCCceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 186 GNIAPEEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 186 ~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
| -.=+..|||.. +|+.+ -.+|..+.-++
T Consensus 195 G---YrIv~~iGDq~-sDl~G-~~~~~RtFKLP 222 (229)
T TIGR01675 195 G---YRIWGNIGDQW-SDLLG-SPPGRRTFKLP 222 (229)
T ss_pred C---ceEEEEECCCh-HHhcC-CCccCceeeCC
Confidence 2 23578899999 99965 34555554444
No 148
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=98.61 E-value=1.5e-08 Score=76.33 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=61.2
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcch---hhhhhhhcCCCCCcceeEeeeccccC-cc----CCCHHHHHHHHHHh
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRY---QDVILPALGVNQGTEWDFGVFSGLEG-VE----KPDPRIYEIALERA 185 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~gl~~~~~f~~~~~~~~~~-~~----kp~~~~~~~~~~~~ 185 (253)
.+.|++.++++.++++|+.|+++||..... ...-|+..|... .+.++...... .. .-|....+.+.+.
T Consensus 115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~~---~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~- 190 (229)
T PF03767_consen 115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFPG---WDHLILRPDKDPSKKSAVEYKSERRKEIEKK- 190 (229)
T ss_dssp EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTST---BSCGEEEEESSTSS------SHHHHHHHHHT-
T ss_pred cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCCc---cchhccccccccccccccccchHHHHHHHHc-
Confidence 677999999999999999999999998764 334566677654 23333222221 11 1233444444444
Q ss_pred CCCCCCceEEEcCCcccchhhhhhc---CCeEEEEc
Q 039449 186 GNIAPEEALHIGDSFRKDYVPAKSV---GMHALLVD 218 (253)
Q Consensus 186 ~~~~~~~~~~iGD~~~~Di~~a~~~---G~~~i~~~ 218 (253)
| . +=+++|||+. +|+..++.. |...+.++
T Consensus 191 G-y--~Ii~~iGD~~-~D~~~~~~~~~~~~r~f~lP 222 (229)
T PF03767_consen 191 G-Y--RIIANIGDQL-SDFSGAKTAGARAERWFKLP 222 (229)
T ss_dssp T-E--EEEEEEESSG-GGCHCTHHHHHHHTTEEE-T
T ss_pred C-C--cEEEEeCCCH-HHhhcccccccccceEEEcC
Confidence 3 1 2489999999 899995444 34444444
No 149
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.58 E-value=1.9e-07 Score=61.68 Aligned_cols=82 Identities=26% Similarity=0.315 Sum_probs=63.9
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhC-----C
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAG-----N 187 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~-----~ 187 (253)
+.++|.++++++.++..|+-+..+|=+....+-..++.+++.. ||+.+++-.--- |-.++-+++..++ -
T Consensus 40 v~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~aLral~~~~--yFhy~ViePhP~----K~~ML~~llr~i~~er~~~ 113 (164)
T COG4996 40 VHLFPDVKETLKWARNSGYILGLASWNFEDKAIKALRALDLLQ--YFHYIVIEPHPY----KFLMLSQLLREINTERNQK 113 (164)
T ss_pred EEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHHHHHhchhh--hEEEEEecCCCh----hHHHHHHHHHHHHHhhccc
Confidence 4889999999999999999999999888777778999999998 888765432211 2245555555543 2
Q ss_pred CCCCceEEEcCCc
Q 039449 188 IAPEEALHIGDSF 200 (253)
Q Consensus 188 ~~~~~~~~iGD~~ 200 (253)
++|.++++++|+.
T Consensus 114 ikP~~Ivy~DDR~ 126 (164)
T COG4996 114 IKPSEIVYLDDRR 126 (164)
T ss_pred cCcceEEEEeccc
Confidence 7899999999988
No 150
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=98.50 E-value=1.2e-06 Score=66.41 Aligned_cols=98 Identities=10% Similarity=0.079 Sum_probs=60.1
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcch---hhhhhhhcCCCCCcceeEeeeccccCccCCCH-----HHHHHHHHH
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRY---QDVILPALGVNQGTEWDFGVFSGLEGVEKPDP-----RIYEIALER 184 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~-----~~~~~~~~~ 184 (253)
.++.|++.++.++++++|++++++||..... ...-|+..|... + +.++.-......+.+. +...++. +
T Consensus 144 ApAlp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~--~-~~LiLR~~~D~~~~~av~yKs~~R~~li-~ 219 (275)
T TIGR01680 144 APALPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHT--W-EKLILKDPQDNSAENAVEYKTAARAKLI-Q 219 (275)
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCC--c-ceeeecCCCCCccchhHHHHHHHHHHHH-H
Confidence 3678999999999999999999999998654 334455667764 2 4444432222222111 2222222 1
Q ss_pred hCCCCCCceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 185 AGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 185 ~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
-| -.=+..|||.. +|+.+....+-.+.-++
T Consensus 220 eG---YrIv~~iGDq~-sDl~G~~~g~~RtFKLP 249 (275)
T TIGR01680 220 EG---YNIVGIIGDQW-NDLKGEHRGAIRSFKLP 249 (275)
T ss_pred cC---ceEEEEECCCH-HhccCCCccCcceecCC
Confidence 22 33578999999 99976552234555544
No 151
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=98.49 E-value=9.3e-07 Score=78.00 Aligned_cols=112 Identities=14% Similarity=0.160 Sum_probs=83.0
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
+++|++.+.+++|++.|++++++|+.....++.+.+.+|+.. ++ +.. | +--..+++.++ - ++.|
T Consensus 568 ~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~~--~~------~~~----p--~~K~~~v~~l~-~-~~~v 631 (741)
T PRK11033 568 TLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGIDF--RA------GLL----P--EDKVKAVTELN-Q-HAPL 631 (741)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCe--ec------CCC----H--HHHHHHHHHHh-c-CCCE
Confidence 578999999999999999999999999999999999999963 21 111 1 22223566665 3 3689
Q ss_pred EEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCC--cccCCHHHHHHHHh
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGA--IVLPDLVAVKEFLT 247 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~--~~i~~l~el~~~l~ 247 (253)
+||||+. ||..+++.+++..++-. + .... .+..+ ...+++.+|..++.
T Consensus 632 ~mvGDgi-NDapAl~~A~vgia~g~--~--~~~a-~~~adivl~~~~l~~l~~~i~ 681 (741)
T PRK11033 632 AMVGDGI-NDAPAMKAASIGIAMGS--G--TDVA-LETADAALTHNRLRGLAQMIE 681 (741)
T ss_pred EEEECCH-HhHHHHHhCCeeEEecC--C--CHHH-HHhCCEEEecCCHHHHHHHHH
Confidence 9999999 99999999997776643 2 2222 22344 45568888887775
No 152
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=98.42 E-value=1.5e-06 Score=78.50 Aligned_cols=128 Identities=14% Similarity=0.115 Sum_probs=89.8
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcc--eeEeeeccccC----------------ccCCCH
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTE--WDFGVFSGLEG----------------VEKPDP 175 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~--f~~~~~~~~~~----------------~~kp~~ 175 (253)
+++|++.+.++.|++.|++++++|+.....+..+.+..|+..... ....+...+.. .....|
T Consensus 537 plr~~v~e~I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v~ar~~P 616 (917)
T TIGR01116 537 PPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVLFSRVEP 616 (917)
T ss_pred CCchhHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeEEEecCH
Confidence 468999999999999999999999999999999999999864100 00111111100 012233
Q ss_pred HHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCC--HHHHHHHHhh
Q 039449 176 RIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPD--LVAVKEFLTS 248 (253)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~--l~el~~~l~~ 248 (253)
+--..+.+.++ -..+.+.|+||+. ||+.+.++|+++.++-. + .+.....+++++.+ +..+.+++.+
T Consensus 617 ~~K~~iV~~lq-~~g~~va~iGDG~-ND~~alk~AdVGia~g~--g---~~~ak~aAD~vl~dd~f~~i~~~i~~ 684 (917)
T TIGR01116 617 SHKSELVELLQ-EQGEIVAMTGDGV-NDAPALKKADIGIAMGS--G---TEVAKEASDMVLADDNFATIVAAVEE 684 (917)
T ss_pred HHHHHHHHHHH-hcCCeEEEecCCc-chHHHHHhCCeeEECCC--C---cHHHHHhcCeEEccCCHHHHHHHHHH
Confidence 44456666776 5668899999999 99999999999765532 2 22334567788876 9999888754
No 153
>PLN02382 probable sucrose-phosphatase
Probab=98.40 E-value=1.1e-06 Score=72.09 Aligned_cols=47 Identities=19% Similarity=0.157 Sum_probs=40.8
Q ss_pred ccCCCHHHHHHHHHHh---CCCCCCceEEEcCCcccchhhhhhcC-CeEEEEc
Q 039449 170 VEKPDPRIYEIALERA---GNIAPEEALHIGDSFRKDYVPAKSVG-MHALLVD 218 (253)
Q Consensus 170 ~~kp~~~~~~~~~~~~---~~~~~~~~~~iGD~~~~Di~~a~~~G-~~~i~~~ 218 (253)
..-.|..+++.+++++ + +++++++++||+. ||++|.+.+| ...++-+
T Consensus 172 ~g~sKg~Al~~L~~~~~~~g-i~~~~~iafGDs~-NDleMl~~ag~~gvam~N 222 (413)
T PLN02382 172 QGAGKGQALAYLLKKLKAEG-KAPVNTLVCGDSG-NDAELFSVPDVYGVMVSN 222 (413)
T ss_pred CCCCHHHHHHHHHHHhhhcC-CChhcEEEEeCCH-HHHHHHhcCCCCEEEEcC
Confidence 4456789999999999 8 9999999999999 9999999999 5666644
No 154
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=98.39 E-value=1.1e-05 Score=67.52 Aligned_cols=112 Identities=15% Similarity=0.083 Sum_probs=64.5
Q ss_pred ChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhh-cCCCCCcce--------eEe
Q 039449 92 DEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPA-LGVNQGTEW--------DFG 162 (253)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~-~gl~~~~~f--------~~~ 162 (253)
+.+++....++++.++... .+.+.+.+ .++++|.. +++|......++.+++. +|++. .. +..
T Consensus 91 ~~~el~~~~r~~l~~f~~~---~l~~~a~~---~~~~~g~~-vvVSASp~~~Vepfa~~~LGid~--VIgTeLev~~~G~ 161 (497)
T PLN02177 91 KIRDIELVSRSVLPKFYAE---DVHPETWR---VFNSFGKR-YIITASPRIMVEPFVKTFLGADK--VLGTELEVSKSGR 161 (497)
T ss_pred CHHHHHHHHHHHHHHHHHH---hcCHHHHH---HHHhCCCE-EEEECCcHHHHHHHHHHcCCCCE--EEecccEECcCCE
Confidence 5566655555555444322 24444444 44567755 89999999999999965 78875 11 111
Q ss_pred eeccccCccCC-C-HHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEE
Q 039449 163 VFSGLEGVEKP-D-PRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALL 216 (253)
Q Consensus 163 ~~~~~~~~~kp-~-~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~ 216 (253)
++....+. .+ . .+-...+-+.++ .+... +++|||. +|..+...|+-..+.
T Consensus 162 ~TG~i~g~-~~c~Ge~Kv~rl~~~~g-~~~~~-~aYgDS~-sD~plL~~a~e~y~V 213 (497)
T PLN02177 162 ATGFMKKP-GVLVGDHKRDAVLKEFG-DALPD-LGLGDRE-TDHDFMSICKEGYMV 213 (497)
T ss_pred EeeeecCC-CCCccHHHHHHHHHHhC-CCCce-EEEECCc-cHHHHHHhCCccEEe
Confidence 11111110 01 1 122223334556 54444 8999999 899999999966443
No 155
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=98.35 E-value=4.6e-06 Score=61.45 Aligned_cols=82 Identities=17% Similarity=0.188 Sum_probs=57.8
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcch----hhhhhhhcCCCCCccee-EeeeccccCccCCCHHHHHHHHHHhCCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRY----QDVILPALGVNQGTEWD-FGVFSGLEGVEKPDPRIYEIALERAGNI 188 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~----~~~~l~~~gl~~~~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~ 188 (253)
.+.||+.+++++.-++|..+..+||...+. ...-|+..|++. .-. .++.- ...+++..-++.+-+.+.
T Consensus 122 k~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~--~~~~~~llk---k~~k~Ke~R~~~v~k~~~-- 194 (274)
T COG2503 122 KAVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQ--VLESHLLLK---KDKKSKEVRRQAVEKDYK-- 194 (274)
T ss_pred ccCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCccc--ccccceEEe---eCCCcHHHHHHHHhhccc--
Confidence 778999999999999999999999998765 334566777775 222 12222 233555555555555444
Q ss_pred CCCceEEEcCCcccchhh
Q 039449 189 APEEALHIGDSFRKDYVP 206 (253)
Q Consensus 189 ~~~~~~~iGD~~~~Di~~ 206 (253)
-++.|||++ .|...
T Consensus 195 ---iVm~vGDNl-~DF~d 208 (274)
T COG2503 195 ---IVMLVGDNL-DDFGD 208 (274)
T ss_pred ---eeeEecCch-hhhcc
Confidence 689999999 78754
No 156
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=98.35 E-value=3.6e-06 Score=58.22 Aligned_cols=120 Identities=17% Similarity=0.145 Sum_probs=77.7
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
....++...|..+++. .+++.+|.......+..-..+.... ..++.+.+.+..+ | ..+.+.+. ++
T Consensus 72 l~~q~v~~~L~~~~e~-~~L~~itar~~dl~~iT~~~l~~q~-ih~~~l~i~g~h~--K------V~~vrth~-id---- 136 (194)
T COG5663 72 LLAQLVKQVLPSLKEE-HRLIYITARKADLTRITYAWLFIQN-IHYDHLEIVGLHH--K------VEAVRTHN-ID---- 136 (194)
T ss_pred HHHHHHHHHhHHHHhh-ceeeeeehhhHHHHHHHHHHHHHhc-cchhhhhhhcccc--c------chhhHhhc-cC----
Confidence 3345777788888877 6888999887766554444433332 1233333333222 1 14677777 76
Q ss_pred EEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhhhh
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSEIS 251 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~~~ 251 (253)
+++.|+.+|-.+.|+++|++.+.++.+-.. .+ ......++-++.|....+.+.+.
T Consensus 137 lf~ed~~~na~~iAk~~~~~vilins~ynR-kp--~~~niiR~~~w~e~y~~vd~~~k 191 (194)
T COG5663 137 LFFEDSHDNAGQIAKNAGIPVILINSPYNR-KP--AAKNIIRANNWAEAYEWVDSRLK 191 (194)
T ss_pred ccccccCchHHHHHHhcCCcEEEecCcccc-cc--hHHHHHHHHhHHHHHHHHHHHhc
Confidence 899999999999999999999999942211 11 11223677788888888877653
No 157
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=98.29 E-value=3.9e-05 Score=58.73 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=70.6
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhh---hhcCCCCCcc-------eeEeeecc-----------c-cCcc
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVIL---PALGVNQGTE-------WDFGVFSG-----------L-EGVE 171 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l---~~~gl~~~~~-------f~~~~~~~-----------~-~~~~ 171 (253)
.+-+.+.++++.|+.+|+++..+|..........+ +.+|++-... +....+.. . ...+
T Consensus 81 lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~ 160 (252)
T PF11019_consen 81 LIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGG 160 (252)
T ss_pred EcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEEeCC
Confidence 34578999999999999999999999877654444 3445542000 00000000 0 0122
Q ss_pred CCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhh----hhhcCCeEEEEc
Q 039449 172 KPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVP----AKSVGMHALLVD 218 (253)
Q Consensus 172 kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~----a~~~G~~~i~~~ 218 (253)
-++.+++..++...+ ..|+.++||+|+. ..+.. ++..|+..+++.
T Consensus 161 ~~KG~~L~~fL~~~~-~~pk~IIfIDD~~-~nl~sv~~a~k~~~I~f~G~~ 209 (252)
T PF11019_consen 161 QDKGEVLKYFLDKIN-QSPKKIIFIDDNK-ENLKSVEKACKKSGIDFIGFH 209 (252)
T ss_pred CccHHHHHHHHHHcC-CCCCeEEEEeCCH-HHHHHHHHHHhhCCCcEEEEE
Confidence 567899999999999 9999999999999 57654 444588888776
No 158
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=98.29 E-value=6.4e-06 Score=71.23 Aligned_cols=114 Identities=12% Similarity=0.087 Sum_probs=84.3
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
++.|++.+.+++|++.|++++++|+.....+..+.+.+|++. + ++.. .|+--..+++.+. -..+.+
T Consensus 446 ~~Rp~a~eaI~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI~~--v-----~a~~------~PedK~~~v~~lq-~~g~~V 511 (675)
T TIGR01497 446 IVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDD--F-----IAEA------TPEDKIALIRQEQ-AEGKLV 511 (675)
T ss_pred cchhHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCE--E-----EcCC------CHHHHHHHHHHHH-HcCCeE
Confidence 567899999999999999999999999999999999999986 2 2221 2333334455554 344679
Q ss_pred EEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcc--cCCHHHHHHHHh
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIV--LPDLVAVKEFLT 247 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~--i~~l~el~~~l~ 247 (253)
.|+||+. ||..+.+++++..++-+ + .+...+..+++ =+|++.+.+.++
T Consensus 512 amvGDG~-NDapAL~~AdvGiAm~~--g---t~~akeaadivLldd~~s~Iv~av~ 561 (675)
T TIGR01497 512 AMTGDGT-NDAPALAQADVGVAMNS--G---TQAAKEAANMVDLDSDPTKLIEVVH 561 (675)
T ss_pred EEECCCc-chHHHHHhCCEeEEeCC--C---CHHHHHhCCEEECCCCHHHHHHHHH
Confidence 9999999 99999999999887743 2 12223344533 357888877765
No 159
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=98.26 E-value=1.8e-05 Score=55.53 Aligned_cols=92 Identities=16% Similarity=0.227 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhhh----hhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQDV----ILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~----~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
-+..++.-..++|-.++.+|+.....++. +.+.+++.. . ..+.+.++.. ||...---..+...+ --
T Consensus 118 vA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i~~--m-~pv~f~Gdk~--k~~qy~Kt~~i~~~~-----~~ 187 (237)
T COG3700 118 VARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHITN--M-NPVIFAGDKP--KPGQYTKTQWIQDKN-----IR 187 (237)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhcccCC--C-cceeeccCCC--CcccccccHHHHhcC-----ce
Confidence 45567777778899999999998765443 334456654 2 2223333222 222222223455555 35
Q ss_pred EEEcCCcccchhhhhhcCCeEEEEcCC
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALLVDRF 220 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~~~~~ 220 (253)
++.|||. +||.+|+.+|+..|-+.+.
T Consensus 188 IhYGDSD-~Di~AAkeaG~RgIRilRA 213 (237)
T COG3700 188 IHYGDSD-NDITAAKEAGARGIRILRA 213 (237)
T ss_pred EEecCCc-hhhhHHHhcCccceeEEec
Confidence 9999999 8999999999999987753
No 160
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=98.24 E-value=3.7e-06 Score=72.74 Aligned_cols=115 Identities=11% Similarity=0.064 Sum_probs=87.0
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
++.|++.+.+++|++.|++++++|+.....+..+.+.+|++. +++.. .|+--.++.+.+. -..+.+
T Consensus 441 p~R~~a~e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~~-------v~A~~------~PedK~~iV~~lQ-~~G~~V 506 (673)
T PRK14010 441 VIKDGLVERFRELREMGIETVMCTGDNELTAATIAKEAGVDR-------FVAEC------KPEDKINVIREEQ-AKGHIV 506 (673)
T ss_pred CCcHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCce-------EEcCC------CHHHHHHHHHHHH-hCCCEE
Confidence 567999999999999999999999999999999999999986 23222 3344445666666 455679
Q ss_pred EEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCccc--CCHHHHHHHHhh
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVL--PDLVAVKEFLTS 248 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i--~~l~el~~~l~~ 248 (253)
.|+||+. ||..+.+++.+..++-. +. +.-.+..+.+. +|++.+.+.++.
T Consensus 507 aMtGDGv-NDAPALa~ADVGIAMgs--GT---dvAkeAADiVLldd~ls~Iv~av~~ 557 (673)
T PRK14010 507 AMTGDGT-NDAPALAEANVGLAMNS--GT---MSAKEAANLIDLDSNPTKLMEVVLI 557 (673)
T ss_pred EEECCCh-hhHHHHHhCCEEEEeCC--CC---HHHHHhCCEEEcCCCHHHHHHHHHH
Confidence 9999999 99999999999877753 21 22234455333 578888777753
No 161
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.22 E-value=3.9e-06 Score=72.85 Aligned_cols=114 Identities=17% Similarity=0.204 Sum_probs=86.1
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
++.|++.+.+++|++.|++++++|+.+...++.+.+.+|++. +.++-.. +--.+..+++. -..+.+
T Consensus 537 ~~R~~a~~aI~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGId~-------v~AellP------edK~~~V~~l~-~~g~~V 602 (713)
T COG2217 537 ELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDE-------VRAELLP------EDKAEIVRELQ-AEGRKV 602 (713)
T ss_pred CCChhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcChHh-------heccCCc------HHHHHHHHHHH-hcCCEE
Confidence 577999999999999999999999999999999999999987 4444332 22335566665 455789
Q ss_pred EEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCC--cccCCHHHHHHHHh
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGA--IVLPDLVAVKEFLT 247 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~--~~i~~l~el~~~l~ 247 (253)
.||||.. ||-.+..++.+..++-.+ . .-. .+..+ ..=+|+..+...++
T Consensus 603 amVGDGI-NDAPALA~AdVGiAmG~G--t--DvA-~eaADvvL~~~dL~~v~~ai~ 652 (713)
T COG2217 603 AMVGDGI-NDAPALAAADVGIAMGSG--T--DVA-IEAADVVLMRDDLSAVPEAID 652 (713)
T ss_pred EEEeCCc-hhHHHHhhcCeeEeecCC--c--HHH-HHhCCEEEecCCHHHHHHHHH
Confidence 9999999 999999999988777542 1 111 23344 34457888777765
No 162
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=98.21 E-value=3.9e-07 Score=69.75 Aligned_cols=45 Identities=31% Similarity=0.373 Sum_probs=36.5
Q ss_pred cCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 171 EKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 171 ~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
...|..+++.++++++ +++++++++|||. ||+.|. ..+...|.|.
T Consensus 163 ~a~K~~Al~~L~~~~~-~~~~~vl~aGDSg-ND~~mL-~~~~~~vvV~ 207 (247)
T PF05116_consen 163 GASKGAALRYLMERWG-IPPEQVLVAGDSG-NDLEML-EGGDHGVVVG 207 (247)
T ss_dssp T-SHHHHHHHHHHHHT---GGGEEEEESSG-GGHHHH-CCSSEEEE-T
T ss_pred CCCHHHHHHHHHHHhC-CCHHHEEEEeCCC-CcHHHH-cCcCCEEEEc
Confidence 3456799999999999 9999999999999 999999 7777888776
No 163
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=98.15 E-value=1.8e-05 Score=68.66 Aligned_cols=115 Identities=14% Similarity=0.119 Sum_probs=86.6
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
++.|++.+.+++|++.|++++++|+.....+..+.+..|+++ + ++.. .|+--..+.+.+. -..+-+
T Consensus 445 ~~R~~~~eai~~Lr~~GI~vvMiTGDn~~TA~aIA~elGId~--v-----~A~~------~PedK~~iV~~lQ-~~G~~V 510 (679)
T PRK01122 445 IVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDD--F-----LAEA------TPEDKLALIRQEQ-AEGRLV 510 (679)
T ss_pred cCchhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCcE--E-----EccC------CHHHHHHHHHHHH-HcCCeE
Confidence 467999999999999999999999999999999999999986 2 2222 2344445666665 455679
Q ss_pred EEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCccc--CCHHHHHHHHhh
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVL--PDLVAVKEFLTS 248 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i--~~l~el~~~l~~ 248 (253)
.|+||+. ||..+.+++.+..++-. +. +.-.+..+.+. +|++.+.+.++.
T Consensus 511 aMtGDGv-NDAPALa~ADVGIAMgs--GT---dvAkeAADiVLldd~~s~Iv~av~~ 561 (679)
T PRK01122 511 AMTGDGT-NDAPALAQADVGVAMNS--GT---QAAKEAGNMVDLDSNPTKLIEVVEI 561 (679)
T ss_pred EEECCCc-chHHHHHhCCEeEEeCC--CC---HHHHHhCCEEEeCCCHHHHHHHHHH
Confidence 9999999 99999999999887753 21 22234455333 478888777753
No 164
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=98.12 E-value=2e-05 Score=71.01 Aligned_cols=124 Identities=10% Similarity=0.087 Sum_probs=86.8
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccC----------------ccCCCHHH
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEG----------------VEKPDPRI 177 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~----------------~~kp~~~~ 177 (253)
++.|++.+.+++|++.|+++.++|+.....+..+.+.+|+.. ..++...+.. ...-.|+-
T Consensus 515 p~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~----~~v~~g~~l~~~~~~el~~~~~~~~vfAr~~Pe~ 590 (867)
T TIGR01524 515 PPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDA----NDFLLGADIEELSDEELARELRKYHIFARLTPMQ 590 (867)
T ss_pred CCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCC----CCeeecHhhhhCCHHHHHHHhhhCeEEEECCHHH
Confidence 467899999999999999999999999999999999999974 1222222211 01123344
Q ss_pred HHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCccc--CCHHHHHHHHhh
Q 039449 178 YEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVL--PDLVAVKEFLTS 248 (253)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i--~~l~el~~~l~~ 248 (253)
-.++.+.+. -..+.+.|+||+. ||..+.++|.++.++-. +. +.-.+..+.++ +|+..+...++.
T Consensus 591 K~~iV~~lq-~~G~vVam~GDGv-NDapALk~AdVGIAmg~--gt---dvAk~aADiVLldd~~~~I~~ai~~ 656 (867)
T TIGR01524 591 KSRIIGLLK-KAGHTVGFLGDGI-NDAPALRKADVGISVDT--AA---DIAKEASDIILLEKSLMVLEEGVIE 656 (867)
T ss_pred HHHHHHHHH-hCCCEEEEECCCc-ccHHHHHhCCEEEEeCC--cc---HHHHHhCCEEEecCChHHHHHHHHH
Confidence 445555555 4446799999999 99999999999987743 21 12234455433 578888777764
No 165
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=98.09 E-value=1.9e-05 Score=71.16 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=88.4
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCc----------------cCCCHHH
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGV----------------EKPDPRI 177 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~----------------~kp~~~~ 177 (253)
++.|++.+.++.|++.|+++.++|+.....+..+.+.+|+.. +.++...+... ..-.|+-
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~----~~v~~G~el~~l~~~el~~~~~~~~VfAr~sPe~ 625 (902)
T PRK10517 550 PPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDA----GEVLIGSDIETLSDDELANLAERTTLFARLTPMH 625 (902)
T ss_pred cchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCc----cCceeHHHHHhCCHHHHHHHHhhCcEEEEcCHHH
Confidence 467899999999999999999999999999999999999974 22333322210 1223444
Q ss_pred HHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCccc--CCHHHHHHHHhh
Q 039449 178 YEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVL--PDLVAVKEFLTS 248 (253)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i--~~l~el~~~l~~ 248 (253)
-..+.+.+. -..+-|.|+||+. ||..+.++|.++.++-. +. +.-.+..+.++ +|+..+.+.+..
T Consensus 626 K~~IV~~Lq-~~G~vVam~GDGv-NDaPALk~ADVGIAmg~--gt---dvAkeaADiVLldd~~~~I~~ai~~ 691 (902)
T PRK10517 626 KERIVTLLK-REGHVVGFMGDGI-NDAPALRAADIGISVDG--AV---DIAREAADIILLEKSLMVLEEGVIE 691 (902)
T ss_pred HHHHHHHHH-HCCCEEEEECCCc-chHHHHHhCCEEEEeCC--cC---HHHHHhCCEEEecCChHHHHHHHHH
Confidence 455555555 4456799999999 99999999999887743 21 22234455444 578888777754
No 166
>PLN02645 phosphoglycolate phosphatase
Probab=98.08 E-value=2.3e-05 Score=62.29 Aligned_cols=90 Identities=12% Similarity=0.055 Sum_probs=66.4
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhh---hhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDV---ILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAP 190 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~---~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 190 (253)
.++||+.++|+.|+++|++++++||+....... .++.+|+.. .++.++.+.. .....++..+ ...
T Consensus 44 ~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~~--~~~~I~ts~~---------~~~~~l~~~~-~~~ 111 (311)
T PLN02645 44 KLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLNV--TEEEIFSSSF---------AAAAYLKSIN-FPK 111 (311)
T ss_pred ccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCCC--ChhhEeehHH---------HHHHHHHhhc-cCC
Confidence 567999999999999999999999998655443 446788865 5555555543 4445566655 544
Q ss_pred CceEEEcCCcccchhhhhhcCCeEEE
Q 039449 191 EEALHIGDSFRKDYVPAKSVGMHALL 216 (253)
Q Consensus 191 ~~~~~iGD~~~~Di~~a~~~G~~~i~ 216 (253)
.+.++++++. .+...++.+|+.++.
T Consensus 112 ~~~V~viG~~-~~~~~l~~~Gi~~~~ 136 (311)
T PLN02645 112 DKKVYVIGEE-GILEELELAGFQYLG 136 (311)
T ss_pred CCEEEEEcCH-HHHHHHHHCCCEEec
Confidence 4557777788 699999999998764
No 167
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=98.05 E-value=3.7e-05 Score=70.04 Aligned_cols=127 Identities=10% Similarity=0.056 Sum_probs=87.6
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccC----------------ccCCCHHH
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEG----------------VEKPDPRI 177 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~----------------~~kp~~~~ 177 (253)
++.|++.+.++.|++.|++++++|+.....+..+.+..|+.. .-..++...+.. ...-.|+-
T Consensus 579 plr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~--~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~sPe~ 656 (941)
T TIGR01517 579 PLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILT--FGGLAMEGKEFRRLVYEEMDPILPKLRVLARSSPLD 656 (941)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCC--CCceEeeHHHhhhCCHHHHHHHhccCeEEEECCHHH
Confidence 567899999999999999999999999999999999999964 111222221111 01223344
Q ss_pred HHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccC--CHHHHHHHHhh
Q 039449 178 YEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLP--DLVAVKEFLTS 248 (253)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~--~l~el~~~l~~ 248 (253)
-..+.+.+. -..+.|.|+||+. ||..+.++|.++.++-. .+ .+.-....++++. ++..+..++..
T Consensus 657 K~~iV~~lq-~~g~vVam~GDGv-NDapALk~AdVGIAmg~-~g---tdvAk~aADivL~dd~f~~I~~~i~~ 723 (941)
T TIGR01517 657 KQLLVLMLK-DMGEVVAVTGDGT-NDAPALKLADVGFSMGI-SG---TEVAKEASDIILLDDNFASIVRAVKW 723 (941)
T ss_pred HHHHHHHHH-HCCCEEEEECCCC-chHHHHHhCCcceecCC-Cc---cHHHHHhCCEEEecCCHHHHHHHHHH
Confidence 444555554 3446799999999 99999999998877632 12 1222345565554 88888887753
No 168
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=98.02 E-value=2.7e-05 Score=70.37 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=88.1
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCc----------------cCCCHHH
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGV----------------EKPDPRI 177 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~----------------~kp~~~~ 177 (253)
++.|++.+.+++|++.|+++.++|+.....+..+.+.+|+.. ..++...+... ..-.|+-
T Consensus 550 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~----~~vi~G~el~~~~~~el~~~v~~~~VfAr~sPe~ 625 (903)
T PRK15122 550 PPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLEP----GEPLLGTEIEAMDDAALAREVEERTVFAKLTPLQ 625 (903)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC----CCccchHhhhhCCHHHHHHHhhhCCEEEEeCHHH
Confidence 567899999999999999999999999999999999999974 12222222110 1223444
Q ss_pred HHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCccc--CCHHHHHHHHhh
Q 039449 178 YEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVL--PDLVAVKEFLTS 248 (253)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i--~~l~el~~~l~~ 248 (253)
-.++.+.+. -..+-|.|+||+. ||..+.++|.++.++-. +. +.-.+..+.++ +|+..+...++.
T Consensus 626 K~~iV~~Lq-~~G~vVamtGDGv-NDaPALk~ADVGIAmg~--gt---dvAkeaADiVLldd~f~~Iv~ai~~ 691 (903)
T PRK15122 626 KSRVLKALQ-ANGHTVGFLGDGI-NDAPALRDADVGISVDS--GA---DIAKESADIILLEKSLMVLEEGVIK 691 (903)
T ss_pred HHHHHHHHH-hCCCEEEEECCCc-hhHHHHHhCCEEEEeCc--cc---HHHHHhcCEEEecCChHHHHHHHHH
Confidence 455566665 4456799999999 99999999999876642 21 12234455444 578888877764
No 169
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=98.00 E-value=4.4e-05 Score=53.41 Aligned_cols=99 Identities=18% Similarity=0.245 Sum_probs=60.7
Q ss_pred cCCChHHHHHHHHHcCCEEEEEeCCCcch---hhhhhhhc-----CCCCCcceeE--eeecccc-CccCCCHHHHHH-HH
Q 039449 115 VFPDSQPFLRWAREKGLIVGIISNAEYRY---QDVILPAL-----GVNQGTEWDF--GVFSGLE-GVEKPDPRIYEI-AL 182 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~-----gl~~~~~f~~--~~~~~~~-~~~kp~~~~~~~-~~ 182 (253)
..+|+.++++.++++||++..+|+.+.-. .+..|+.. ++..+..+.. .+++.-. ..-..+|+.|+. ++
T Consensus 28 ~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~~lP~Gpv~~sP~~l~~al~rEvi~~~p~~fK~~~L 107 (157)
T PF08235_consen 28 THPGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGHNLPDGPVLLSPDSLFSALHREVISKDPEEFKIACL 107 (157)
T ss_pred hhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCccCCCCCEEECCcchhhhhhccccccChHHHHHHHH
Confidence 34799999999999999999999998644 45556655 5655333211 0000000 111234444442 23
Q ss_pred HHhCCC----CCCceEEEcCCcccchhhhhhcCCeE
Q 039449 183 ERAGNI----APEEALHIGDSFRKDYVPAKSVGMHA 214 (253)
Q Consensus 183 ~~~~~~----~~~~~~~iGD~~~~Di~~a~~~G~~~ 214 (253)
+.+... ...=...+|++. +|+.+=+++|++.
T Consensus 108 ~~l~~~f~~~~~pf~agfGN~~-tDv~aY~~vGip~ 142 (157)
T PF08235_consen 108 RDLRALFPPDGNPFYAGFGNRS-TDVIAYKAVGIPK 142 (157)
T ss_pred HHHHHhcCCCCCeEEEecCCcH-HHHHHHHHcCCCh
Confidence 332101 223466799999 8999999999975
No 170
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=98.00 E-value=5.3e-05 Score=69.45 Aligned_cols=129 Identities=11% Similarity=0.057 Sum_probs=87.9
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcce--------eEeeeccccCc---------------
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEW--------DFGVFSGLEGV--------------- 170 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f--------~~~~~~~~~~~--------------- 170 (253)
++.|++.+.++.|++.|++++++|+.....+..+.+..|+...... ..++...+...
T Consensus 646 p~r~~v~~aI~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~~~~~~V 725 (1053)
T TIGR01523 646 PPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDLKALCLV 725 (1053)
T ss_pred CCchhHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHHhhcCeE
Confidence 5678999999999999999999999999999999999999641000 11222222110
Q ss_pred -cCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccC--CHHHHHHHHh
Q 039449 171 -EKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLP--DLVAVKEFLT 247 (253)
Q Consensus 171 -~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~--~l~el~~~l~ 247 (253)
..-.|+--..+.+.+. -..+.+.|+||+. ||..+.++|.++.++-. .+. +......++++. ++..+...+.
T Consensus 726 ~ar~sP~~K~~iV~~lq-~~g~~Vam~GDGv-NDapaLk~AdVGIAmg~-~gt---~vak~aADivl~dd~f~~I~~~i~ 799 (1053)
T TIGR01523 726 IARCAPQTKVKMIEALH-RRKAFCAMTGDGV-NDSPSLKMANVGIAMGI-NGS---DVAKDASDIVLSDDNFASILNAIE 799 (1053)
T ss_pred EEecCHHHHHHHHHHHH-hcCCeeEEeCCCc-chHHHHHhCCccEecCC-Ccc---HHHHHhcCEEEecCCHHHHHHHHH
Confidence 1223444445555555 4456799999999 99999999999887632 121 222445666664 5888887775
Q ss_pred h
Q 039449 248 S 248 (253)
Q Consensus 248 ~ 248 (253)
+
T Consensus 800 ~ 800 (1053)
T TIGR01523 800 E 800 (1053)
T ss_pred H
Confidence 4
No 171
>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.96 E-value=2.5e-05 Score=62.90 Aligned_cols=101 Identities=19% Similarity=0.295 Sum_probs=85.2
Q ss_pred ccCCC--hHHHHHHHHHcCCEEEEEeCCCc--chhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCC
Q 039449 114 TVFPD--SQPFLRWAREKGLIVGIISNAEY--RYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIA 189 (253)
Q Consensus 114 ~~~~~--~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 189 (253)
.++|. ..++.+++.+.|.+|+++|.-.- ..++.++-..|.+. +--.++.|++....|.+...|..+++.-+ ++
T Consensus 97 vLypn~~~~eL~e~ai~n~krVIlISDMYlps~Il~~~L~s~g~d~--~nipiY~S~e~rl~KnSg~LFk~Vlk~En-Vd 173 (635)
T COG5610 97 VLYPNKKNIELVEEAIKNEKRVILISDMYLPSSILRTFLNSFGPDF--NNIPIYMSSEFRLKKNSGNLFKAVLKLEN-VD 173 (635)
T ss_pred EeeccccchHHHHHHHhCCCeEEEEecccCcHHHHHHHHHhcCCCc--cCceeeecceeehhcccchHHHHHHhhcC-CC
Confidence 45554 45889999999999999998854 44677777788775 44456778888888999999999999999 99
Q ss_pred CCceEEEcCCcccchhhhhhcCCeEEEE
Q 039449 190 PEEALHIGDSFRKDYVPAKSVGMHALLV 217 (253)
Q Consensus 190 ~~~~~~iGD~~~~Di~~a~~~G~~~i~~ 217 (253)
+..++++||+...|+.++++.|+.|.+.
T Consensus 174 ~~~w~H~GDN~~aD~l~pk~LgI~Tlf~ 201 (635)
T COG5610 174 PKKWIHCGDNWVADYLKPKNLGISTLFY 201 (635)
T ss_pred hhheEEecCchhhhhcCccccchhHHHH
Confidence 9999999999999999999999998765
No 172
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=97.93 E-value=2.3e-05 Score=55.40 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=59.6
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcce-eEeeeccccCccCCCHHHHHHHHHHhCCCCCC
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEW-DFGVFSGLEGVEKPDPRIYEIALERAGNIAPE 191 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f-~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 191 (253)
..++||+.++|..+++. ++++|+|++....+..+++.++... .+| +.+++.+.... +. .+.+-.-++ .+.+
T Consensus 57 v~~rPgv~efL~~l~~~-yel~I~T~~~~~yA~~vl~~ldp~~-~~F~~ri~~rd~~~~--~~---~KdL~~i~~-~d~~ 128 (156)
T TIGR02250 57 TKLRPFLHEFLKEASKL-YEMHVYTMGTRAYAQAIAKLIDPDG-KYFGDRIISRDESGS--PH---TKSLLRLFP-ADES 128 (156)
T ss_pred EEECCCHHHHHHHHHhh-cEEEEEeCCcHHHHHHHHHHhCcCC-CeeccEEEEeccCCC--Cc---cccHHHHcC-CCcc
Confidence 47899999999999966 9999999999999999999998873 267 44444443321 11 111223357 7889
Q ss_pred ceEEEcCCc
Q 039449 192 EALHIGDSF 200 (253)
Q Consensus 192 ~~~~iGD~~ 200 (253)
.+++|+|++
T Consensus 129 ~vvivDd~~ 137 (156)
T TIGR02250 129 MVVIIDDRE 137 (156)
T ss_pred cEEEEeCCH
Confidence 999999999
No 173
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.89 E-value=5.2e-05 Score=66.10 Aligned_cols=114 Identities=12% Similarity=0.140 Sum_probs=85.9
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
.+.|++...+..|++.|++++++|+.+...++...+++|++. ++++.....| ....+++. .....+
T Consensus 723 ~vr~~a~~av~~Lk~~Gi~v~mLTGDn~~aA~svA~~VGi~~-------V~aev~P~~K------~~~Ik~lq-~~~~~V 788 (951)
T KOG0207|consen 723 QVRPDAALAVAELKSMGIKVVMLTGDNDAAARSVAQQVGIDN-------VYAEVLPEQK------AEKIKEIQ-KNGGPV 788 (951)
T ss_pred ccchhHHHHHHHHHhcCceEEEEcCCCHHHHHHHHHhhCcce-------EEeccCchhh------HHHHHHHH-hcCCcE
Confidence 567899999999999999999999999999999999999887 5555554333 24555665 555789
Q ss_pred EEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCC--cccCCHHHHHHHHh
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGA--IVLPDLVAVKEFLT 247 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~--~~i~~l~el~~~l~ 247 (253)
.||||.. ||-.+.-++.++.+...+.. -. .+..+ +.-.+|.+++..++
T Consensus 789 aMVGDGI-NDaPALA~AdVGIaig~gs~----vA-ieaADIVLmrn~L~~v~~ai~ 838 (951)
T KOG0207|consen 789 AMVGDGI-NDAPALAQADVGIAIGAGSD----VA-IEAADIVLMRNDLRDVPFAID 838 (951)
T ss_pred EEEeCCC-CccHHHHhhccceeeccccH----HH-HhhCCEEEEccchhhhHHHHH
Confidence 9999999 99999999988877665311 11 22344 34457777776665
No 174
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=97.88 E-value=8.3e-05 Score=66.10 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=85.8
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecccc----------------------Ccc
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLE----------------------GVE 171 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~----------------------~~~ 171 (253)
++.|++.+.++.|++.|++++++|+.....+..+.+.+|+.. . ++...+. ...
T Consensus 442 p~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~--~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vfA 516 (755)
T TIGR01647 442 PPRHDTKETIERARHLGVEVKMVTGDHLAIAKETARRLGLGT--N---IYTADVLLKGDNRDDLPSGELGEMVEDADGFA 516 (755)
T ss_pred CChhhHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC--C---CcCHHHhcCCcchhhCCHHHHHHHHHhCCEEE
Confidence 567899999999999999999999999999999999999974 1 1111111 011
Q ss_pred CCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCC--cccCCHHHHHHHHhh
Q 039449 172 KPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGA--IVLPDLVAVKEFLTS 248 (253)
Q Consensus 172 kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~--~~i~~l~el~~~l~~ 248 (253)
.-.|+--..+.+.+. -..+.+.|+||+. ||..+.++|.+..++-. +. +.-.+..+ ..=+++..+...++.
T Consensus 517 r~~Pe~K~~iV~~lq-~~G~~VamvGDGv-NDapAL~~AdVGIAm~~--gt---dvAkeaADivLl~d~l~~I~~ai~~ 588 (755)
T TIGR01647 517 EVFPEHKYEIVEILQ-KRGHLVGMTGDGV-NDAPALKKADVGIAVAG--AT---DAARSAADIVLTEPGLSVIVDAILE 588 (755)
T ss_pred ecCHHHHHHHHHHHH-hcCCEEEEEcCCc-ccHHHHHhCCeeEEecC--Cc---HHHHHhCCEEEEcCChHHHHHHHHH
Confidence 223444445556665 4557899999999 99999999999877632 21 12233444 333578777777653
No 175
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.82 E-value=0.0022 Score=47.25 Aligned_cols=42 Identities=17% Similarity=0.236 Sum_probs=35.1
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
.++.||+.+.++.|.+. ..-+++|....+.+++..+..|+..
T Consensus 82 a~lvPgA~etm~~l~~~-~tp~v~STSY~qy~~r~a~~ig~Pr 123 (315)
T COG4030 82 AKLVPGAEETMATLQER-WTPVVISTSYTQYLRRTASMIGVPR 123 (315)
T ss_pred cccCCChHHHHHHHhcc-CCceEEeccHHHHHHHHHHhcCCCc
Confidence 37889999999999887 6777899888888888888887754
No 176
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.80 E-value=0.00067 Score=49.63 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=26.1
Q ss_pred CccccCceEEEEecCCceeccCCCH--HHHHHHHHHHcCCCC
Q 039449 1 MALLSRLRCITVDVTGTLLAYKGEL--GDYYCMAAKSVGLPC 40 (253)
Q Consensus 1 m~~~~~~k~i~fD~DGTL~~~~~~~--~~~~~~~~~~~g~~~ 40 (253)
|....++.+||.|+||||++....+ ..-+..-+++.|.+.
T Consensus 1 m~s~~~~~lIFtDlD~TLl~~~ye~~pA~pv~~el~d~G~~V 42 (274)
T COG3769 1 MFSIQMPLLIFTDLDGTLLPHSYEWQPAAPVLLELKDAGVPV 42 (274)
T ss_pred CCccccceEEEEcccCcccCCCCCCCccchHHHHHHHcCCeE
Confidence 4445678999999999999922222 223445566777663
No 177
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=97.79 E-value=7e-05 Score=57.40 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhc-------CCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHH
Q 039449 173 PDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSV-------GMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEF 245 (253)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~-------G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~ 245 (253)
.|..+++.++++++ ++++++++|||+. ||+.+++.+ |..++.+. .+. ......+++++.+++..+
T Consensus 167 ~Kg~a~~~~~~~~~-~~~~~~i~iGD~~-~D~~~~~~~~~~~~~~g~~~v~v~-~g~-----~~~~A~~~~~~~~~v~~~ 238 (244)
T TIGR00685 167 NKGEIVKRLLWHQP-GSGISPVYLGDDI-TDEDAFRVVNNQWGNYGFYPVPIG-SGS-----KKTVAKFHLTGPQQVLEF 238 (244)
T ss_pred CHHHHHHHHHHhcc-cCCCceEEEcCCC-cHHHHHHHHhcccCCCCeEEEEEe-cCC-----cCCCceEeCCCHHHHHHH
Confidence 45699999999999 9999999999999 999999999 66777775 221 122356899999999988
Q ss_pred Hhhh
Q 039449 246 LTSE 249 (253)
Q Consensus 246 l~~~ 249 (253)
|..+
T Consensus 239 L~~l 242 (244)
T TIGR00685 239 LGLL 242 (244)
T ss_pred HHHH
Confidence 8754
No 178
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=97.72 E-value=0.003 Score=52.49 Aligned_cols=183 Identities=11% Similarity=0.012 Sum_probs=96.4
Q ss_pred CceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCCCChHHHHHHHHHHHHH
Q 039449 6 RLRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHEGFKLAYKEMAKNYPCFGFAAKMPNIVWWKTCVRDSFV 85 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (253)
...+++||+||||+.+.+..+..+.-++..-|..- .. .+...+..+...+ ..+. . ..-.+.++-..+
T Consensus 7 ~~~~~~fD~DGTLlrs~ssFpyFmlva~eagG~~R-----~~-~LL~l~P~l~ll~-~~~~----~-~~~lK~mi~v~f- 73 (498)
T PLN02499 7 TSYSVVSELEGTLLKDADPFSYFMLVAFEASGLIR-----FA-LLLFLWPIIRLLD-MLGM----G-DAALKLMIFVAT- 73 (498)
T ss_pred ccceEEEecccceecCCCccHHHHHHHHHhccHHH-----HH-HHHHHhHHHHHHH-hcCC----c-hHHHHHHHHHHh-
Confidence 35789999999999977776666665555555321 00 1111111111000 0010 0 111111222112
Q ss_pred HcCCCCChHHHHHHHHHHHHHhCCCCCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhh-cCCCCCcceeEeee
Q 039449 86 RAGYDYDEDTFEKIFRRIYASFGSSAPYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPA-LGVNQGTEWDFGVF 164 (253)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~-~gl~~~~~f~~~~~ 164 (253)
.| ...++++...+....++... .+.+ +.++..++.| +++++|..+...++..++. +|.+. ..-.-+-
T Consensus 74 -~G--l~~~die~vaRavlpkf~~~---dv~~---e~~~~~~~~g-~~vVVTAsPrvmVEpFake~LG~D~--VvGTEL~ 141 (498)
T PLN02499 74 -AG--VHESEIESVARAVLPKFYMD---DVDM---EAWKVFSSCD-KRVVVTRMPRVMVERFAKEHLRADE--VIGSELV 141 (498)
T ss_pred -CC--CCHHHHHHHHHHHhhHHHHh---hCCH---HHHHHHHcCC-eEEEEeCCHHHHHHHHHHHhcCCce--EEeeeEE
Confidence 23 34566666666666655432 2222 3566677788 9999999999999999998 88775 2111000
Q ss_pred ccc----cC--ccCCCHHH-HHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 165 SGL----EG--VEKPDPRI-YEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 165 ~~~----~~--~~kp~~~~-~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
... .| .++...+. ...+.+.++ +....+-+||+. .|-.-..-| +..++.
T Consensus 142 v~~~G~~TG~~~G~n~~ek~~~rl~~~~g--~~~~~vg~~~~~-~~~~f~~~c--k~~~~~ 197 (498)
T PLN02499 142 VNRFGFATGFIRGTDVDQSVANRVANLFV--DERPQLGLGRIS-ASSSFLSLC--KEQIHP 197 (498)
T ss_pred EeeccEEEEEEecCccHHHHHHHHHHHhC--ccCceecccCCc-ccchhhhhC--ceEEec
Confidence 000 01 01233333 334444465 234578899988 787766654 455654
No 179
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=97.69 E-value=0.00028 Score=64.71 Aligned_cols=129 Identities=12% Similarity=0.057 Sum_probs=84.5
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcce----------------------eEeeeccccCc-
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEW----------------------DFGVFSGLEGV- 170 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f----------------------~~~~~~~~~~~- 170 (253)
++.|++.+.++++++.|++++++|+.....+..+.+..|+.....- ..++.+.+...
T Consensus 568 plr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G~~l~~l 647 (997)
T TIGR01106 568 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDM 647 (997)
T ss_pred CChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEhHHhhhC
Confidence 4678999999999999999999999999999999999988531000 01222211110
Q ss_pred -----------------cCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCC
Q 039449 171 -----------------EKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGA 233 (253)
Q Consensus 171 -----------------~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~ 233 (253)
..-.|+--..+.+.+. -..+-|.|+||+. ||+.+.++|.++.++-. .+. +......+
T Consensus 648 ~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq-~~g~vv~~~GDG~-ND~paLk~AdVGiamg~-~G~---~vak~aAD 721 (997)
T TIGR01106 648 TSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQ-RQGAIVAVTGDGV-NDSPALKKADIGVAMGI-AGS---DVSKQAAD 721 (997)
T ss_pred CHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHH-HCCCEEEEECCCc-ccHHHHhhCCcceecCC-ccc---HHHHHhhc
Confidence 1122333333444444 3345799999999 99999999998877632 121 22244566
Q ss_pred cccCC--HHHHHHHHhh
Q 039449 234 IVLPD--LVAVKEFLTS 248 (253)
Q Consensus 234 ~~i~~--l~el~~~l~~ 248 (253)
+++.+ +..+.+.+.+
T Consensus 722 ivL~dd~f~~Iv~ai~~ 738 (997)
T TIGR01106 722 MILLDDNFASIVTGVEE 738 (997)
T ss_pred eEEecCCHHHHHHHHHH
Confidence 65554 8888777654
No 180
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=97.65 E-value=0.00056 Score=46.87 Aligned_cols=94 Identities=17% Similarity=0.228 Sum_probs=61.1
Q ss_pred ccCCChHHHHHHHHHc-C-CEEEEEeCCCcc--------hhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHH
Q 039449 114 TVFPDSQPFLRWAREK-G-LIVGIISNAEYR--------YQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALE 183 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~-g-~~~~i~s~~~~~--------~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~ 183 (253)
.+.|...+-++.++.. | ..+.++||.... .+..+-+..|+.- .-.... || ..-++..+
T Consensus 61 ~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~d~s~Ak~le~k~gIpV--------lRHs~k--KP--~ct~E~~~ 128 (190)
T KOG2961|consen 61 AIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDHDDSKAKALEAKIGIPV--------LRHSVK--KP--ACTAEEVE 128 (190)
T ss_pred ccCchhHHHHHHHHHHhCcccEEEEecCcCccccCCchHHHHHHHHhhCCce--------Eeeccc--CC--CccHHHHH
Confidence 4556666667777763 4 678899987432 2333333445542 222222 23 33344444
Q ss_pred HhC----CCCCCceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 184 RAG----NIAPEEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 184 ~~~----~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
.+- ...+++++||||++.+||.+|...|.-.||..+
T Consensus 129 y~~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gVw~~~ 168 (190)
T KOG2961|consen 129 YHFGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGVWTEP 168 (190)
T ss_pred HHhCCcccCChhHeEEEccchhhhHhhhhhccceeEEecc
Confidence 432 267899999999999999999999999999984
No 181
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=97.60 E-value=5.6e-05 Score=56.27 Aligned_cols=46 Identities=17% Similarity=0.116 Sum_probs=41.8
Q ss_pred CccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEE
Q 039449 169 GVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALL 216 (253)
Q Consensus 169 ~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~ 216 (253)
....+|+.+++.++++++ ++++++++|||+. ||+.+++.+|+..++
T Consensus 159 p~~~~K~~~~~~~~~~~~-~~~~~~~~~GD~~-nD~~~~~~~~~~vam 204 (204)
T TIGR01484 159 PAGVDKGSALQALLKELN-GKRDEILAFGDSG-NDEEMFEVAGLAVAV 204 (204)
T ss_pred cCCCChHHHHHHHHHHhC-CCHHHEEEEcCCH-HHHHHHHHcCCceEC
Confidence 446788999999999999 9999999999999 999999999988763
No 182
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=97.58 E-value=0.00021 Score=55.44 Aligned_cols=69 Identities=16% Similarity=0.179 Sum_probs=54.4
Q ss_pred cCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhc----CCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHH
Q 039449 171 EKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSV----GMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFL 246 (253)
Q Consensus 171 ~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~----G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l 246 (253)
.-.|..+++.+++.++ ++.+++++|||+. ||+.|.+.+ |+. |.+.. .. ....+.+++.+++..+|
T Consensus 172 g~~Kg~al~~ll~~~~-~~~~~v~~~GD~~-nD~~mf~~~~~~~g~~-vavg~-a~-------~~A~~~l~~~~~v~~~L 240 (266)
T PRK10187 172 GTNKGEAIAAFMQEAP-FAGRTPVFVGDDL-TDEAGFAVVNRLGGIS-VKVGT-GA-------TQASWRLAGVPDVWSWL 240 (266)
T ss_pred CCCHHHHHHHHHHhcC-CCCCeEEEEcCCc-cHHHHHHHHHhcCCeE-EEECC-CC-------CcCeEeCCCHHHHHHHH
Confidence 3467899999999999 9999999999999 999999988 544 44431 11 12457999999999888
Q ss_pred hhhh
Q 039449 247 TSEI 250 (253)
Q Consensus 247 ~~~~ 250 (253)
..+.
T Consensus 241 ~~l~ 244 (266)
T PRK10187 241 EMIT 244 (266)
T ss_pred HHHH
Confidence 7654
No 183
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=97.58 E-value=9.3e-05 Score=50.06 Aligned_cols=30 Identities=20% Similarity=0.096 Sum_probs=24.1
Q ss_pred cCCChHHHHHHHHHcCCEEEEEeCCCcchh
Q 039449 115 VFPDSQPFLRWAREKGLIVGIISNAEYRYQ 144 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~ 144 (253)
+.+.+.+.+++++++|+.++++|+.+....
T Consensus 25 ~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~ 54 (126)
T TIGR01689 25 PILAVIEKLRHYKALGFEIVISSSRNMRTY 54 (126)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCCchhh
Confidence 445677888889899999999999987543
No 184
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=97.54 E-value=9e-05 Score=61.19 Aligned_cols=102 Identities=19% Similarity=0.239 Sum_probs=67.9
Q ss_pred cCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhc---------CCCCCcceeEeeeccccC----------------
Q 039449 115 VFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPAL---------GVNQGTEWDFGVFSGLEG---------------- 169 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~---------gl~~~~~f~~~~~~~~~~---------------- 169 (253)
..|.+..+|+.|++.|.++.++||+.-.++...++++ .+.+ +||.+++.....
T Consensus 184 k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~d--lFDvVIv~A~KP~FF~~~~pfr~vd~~~ 261 (448)
T PF05761_consen 184 KDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRD--LFDVVIVDARKPGFFTEGRPFREVDTET 261 (448)
T ss_dssp --CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGG--CECEEEES--CCHHHCT---EEEEETTT
T ss_pred CCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhh--heeEEEEcCCCCcccCCCCceEEEECCC
Confidence 3567889999999999999999999999988888765 2334 788877654321
Q ss_pred -ccCC-------------CHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhc-CCeEEEEcC
Q 039449 170 -VEKP-------------DPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSV-GMHALLVDR 219 (253)
Q Consensus 170 -~~kp-------------~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~-G~~~i~~~~ 219 (253)
..+. ..--...+.+.++ ...++|++|||+...||...+.. |+.|+.|-+
T Consensus 262 g~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~-~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~Ii~ 325 (448)
T PF05761_consen 262 GKLKWGKYVGPLEKGKVYSGGNWDQLHKLLG-WRGKEVLYFGDHIYGDILKSKKRHGWRTAAIIP 325 (448)
T ss_dssp SSEECS---SS--TC-EEEE--HHHHHHHCT---GGGEEEEESSTTTTHHHHHHHH-SEEEEE-T
T ss_pred CccccccccccccCCCEeecCCHHHHHHHHc-cCCCeEEEECCchhhhhhhhccccceEEEEEeh
Confidence 0000 0122335566678 88899999999999999977777 999999874
No 185
>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=97.53 E-value=0.0033 Score=49.30 Aligned_cols=101 Identities=20% Similarity=0.213 Sum_probs=67.5
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCc-ceeEeeeccccC-----ccCCC----------------
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGT-EWDFGVFSGLEG-----VEKPD---------------- 174 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~-~f~~~~~~~~~~-----~~kp~---------------- 174 (253)
|...++++.|+++|.++.++||.+..++..-++.+=-.+|. +|+.++.-.... ..+|-
T Consensus 243 ~ql~~fl~kL~~~GKklFLiTNSPysFVd~GM~flvG~~WRdlFDVVIvqA~KP~Fftde~rPfR~~dek~~sl~wdkv~ 322 (510)
T KOG2470|consen 243 PQLLAFLRKLKDHGKKLFLITNSPYSFVDKGMRFLVGDDWRDLFDVVIVQANKPEFFTDERRPFRKYDEKRGSLLWDKVD 322 (510)
T ss_pred HHHHHHHHHHHHhcCcEEEEeCCchhhhhcCceeeeCccHHhhhheeEEecCCCcccccccCcchhhcccccchhhhhhh
Confidence 45678899999999999999999999887666655222222 555544432211 11110
Q ss_pred ---------HHHHHHHHHHhCCCCCCceEEEcCCcccchhhhh-hcCCeEEEEc
Q 039449 175 ---------PRIYEIALERAGNIAPEEALHIGDSFRKDYVPAK-SVGMHALLVD 218 (253)
Q Consensus 175 ---------~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~-~~G~~~i~~~ 218 (253)
.-.+...++.-+ ....+|+++||++.+|+.... +.|+.+..+-
T Consensus 323 klekgkiYy~G~l~~flelt~-WrG~~VlYFGDHlySDLad~tlkhgWRTgAII 375 (510)
T KOG2470|consen 323 KLEKGKIYYQGNLKSFLELTG-WRGPRVLYFGDHLYSDLADLTLKHGWRTGAII 375 (510)
T ss_pred hcccCceeeeccHHHHHHHhc-cCCCeeEEecCcchhhhhhhHhhcccccccch
Confidence 112234455556 778899999999999998776 8898875543
No 186
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.00097 Score=60.68 Aligned_cols=129 Identities=12% Similarity=0.080 Sum_probs=87.0
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCc----------------cCCCHHH
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGV----------------EKPDPRI 177 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~----------------~kp~~~~ 177 (253)
+|.+++.+.++.|++.|++++++|+.....+..+.+..|+.....-..++.+.+... ..-+|+-
T Consensus 547 ppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfARvsP~q 626 (917)
T COG0474 547 PPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFARVSPEQ 626 (917)
T ss_pred CCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEEEcCHHH
Confidence 577999999999999999999999999999999999999876111011333332211 0223444
Q ss_pred HHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCC--cccCCHHHHHHHHhh
Q 039449 178 YEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGA--IVLPDLVAVKEFLTS 248 (253)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~--~~i~~l~el~~~l~~ 248 (253)
-.++.+.+. -..+-+.|.||+. ||..+.++|.++..+.. .|. +.-....+ ..-+++.-+...+.+
T Consensus 627 K~~IV~~lq-~~g~vVamtGDGv-NDapALk~ADVGIamg~-~Gt---daak~Aadivl~dd~~~~i~~av~e 693 (917)
T COG0474 627 KARIVEALQ-KSGHVVAMTGDGV-NDAPALKAADVGIAMGG-EGT---DAAKEAADIVLLDDNFATIVLAVVE 693 (917)
T ss_pred HHHHHHHHH-hCCCEEEEeCCCc-hhHHHHHhcCccEEecc-cHH---HHHHhhcceEeecCcHHHHHHHHHH
Confidence 444555554 4457899999999 99999999999987765 121 11122333 344566666666654
No 187
>PTZ00174 phosphomannomutase; Provisional
Probab=97.46 E-value=0.0001 Score=56.61 Aligned_cols=43 Identities=14% Similarity=-0.042 Sum_probs=35.0
Q ss_pred ccCCCHHHHHHHHHHhCCCCCCceEEEcC----CcccchhhhhhcCCeEEEEc
Q 039449 170 VEKPDPRIYEIALERAGNIAPEEALHIGD----SFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 170 ~~kp~~~~~~~~~~~~~~~~~~~~~~iGD----~~~~Di~~a~~~G~~~i~~~ 218 (253)
.+-.|..+++.+++. ++++++||| +. ||++|.+.+|...+.|.
T Consensus 185 ~gvsKg~al~~L~~~-----~~eviafGD~~~~~~-NDieMl~~~~~~g~~v~ 231 (247)
T PTZ00174 185 KGWDKTYCLRHLEND-----FKEIHFFGDKTFEGG-NDYEIYNDPRTIGHSVK 231 (247)
T ss_pred CCCcHHHHHHHHHhh-----hhhEEEEcccCCCCC-CcHhhhhcCCCceEEeC
Confidence 345667888887777 469999999 88 99999999888777776
No 188
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=97.46 E-value=0.0015 Score=47.89 Aligned_cols=83 Identities=18% Similarity=0.219 Sum_probs=53.5
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccc----------cCc--cCCCHHHHHHH
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGL----------EGV--EKPDPRIYEIA 181 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~----------~~~--~kp~~~~~~~~ 181 (253)
...|++.++|+++.+. |.++|.|.+....++.++..+++.....+...+.-+. .+. -|+ +..+
T Consensus 45 ~kRP~l~eFL~~~~~~-feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKd----L~~l 119 (195)
T TIGR02245 45 LMRPYLHEFLTSAYED-YDIVIWSATSMKWIEIKMTELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKP----LGVI 119 (195)
T ss_pred EeCCCHHHHHHHHHhC-CEEEEEecCCHHHHHHHHHHhcccCCccceEEEEeccccceeeEeeccCcEEEee----cHHh
Confidence 4468999999999985 9999999999999999999887643111111111111 110 122 2222
Q ss_pred HHHhC-CCCCCceEEEcCCcc
Q 039449 182 LERAG-NIAPEEALHIGDSFR 201 (253)
Q Consensus 182 ~~~~~-~~~~~~~~~iGD~~~ 201 (253)
-+.++ ..+.+++++|+|++.
T Consensus 120 w~~l~~~~~~~ntiiVDd~p~ 140 (195)
T TIGR02245 120 WALLPEFYSMKNTIMFDDLRR 140 (195)
T ss_pred hhhcccCCCcccEEEEeCCHH
Confidence 23443 137789999999994
No 189
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=97.40 E-value=0.002 Score=59.64 Aligned_cols=124 Identities=11% Similarity=0.079 Sum_probs=82.8
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeee-----------------------------
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVF----------------------------- 164 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~----------------------------- 164 (253)
++.|++.+.++.|++.|++++++|+.....+..+.+..|+... -..++.
T Consensus 656 ~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~~--~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 733 (1054)
T TIGR01657 656 PLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVNP--SNTLILAEAEPPESGKPNQIKFEVIDSIPFASTQV 733 (1054)
T ss_pred CCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCC--CceEEEeecccccCCCCceEEEEecCccccccccc
Confidence 5779999999999999999999999999998889999988531 111110
Q ss_pred ------------------------ccccC-------------------ccCCCHHHHHHHHHHhCCCCCCceEEEcCCcc
Q 039449 165 ------------------------SGLEG-------------------VEKPDPRIYEIALERAGNIAPEEALHIGDSFR 201 (253)
Q Consensus 165 ------------------------~~~~~-------------------~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~ 201 (253)
+.... ...-.|+--..+.+.+. -...-+.|+||+.
T Consensus 734 ~~~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~qK~~iV~~lq-~~g~~V~m~GDG~- 811 (1054)
T TIGR01657 734 EIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQKETLVELLQ-KLDYTVGMCGDGA- 811 (1054)
T ss_pred cccCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHHHHHHHHHHHH-hCCCeEEEEeCCh-
Confidence 00000 00112233333344444 3346799999999
Q ss_pred cchhhhhhcCCeEEEEcCCCCCChhhhhhcCC--cccCCHHHHHHHHhh
Q 039449 202 KDYVPAKSVGMHALLVDRFKTPDAKEWRKSGA--IVLPDLVAVKEFLTS 248 (253)
Q Consensus 202 ~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~--~~i~~l~el~~~l~~ 248 (253)
||+.+.++|.++.++-.. . . ....+ ...+++..+..++++
T Consensus 812 ND~~ALK~AdVGIam~~~-d----a--s~AA~f~l~~~~~~~I~~~I~e 853 (1054)
T TIGR01657 812 NDCGALKQADVGISLSEA-E----A--SVAAPFTSKLASISCVPNVIRE 853 (1054)
T ss_pred HHHHHHHhcCcceeeccc-c----c--eeecccccCCCcHHHHHHHHHH
Confidence 999999999988877542 1 1 12233 345688888888875
No 190
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.38 E-value=0.00071 Score=55.28 Aligned_cols=89 Identities=11% Similarity=0.095 Sum_probs=66.9
Q ss_pred cCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccC----ccCCCHHHHHHHHHHhCCCCC
Q 039449 115 VFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEG----VEKPDPRIYEIALERAGNIAP 190 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~----~~kp~~~~~~~~~~~~~~~~~ 190 (253)
++.....++..|+++|+-+++.|-++..-+...+.... +.++..++.. ...||.+-+.+++++++ +..
T Consensus 256 ~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~khp-------~MiLkeedfa~~~iNW~~K~eNirkIAkklN-lg~ 327 (574)
T COG3882 256 AFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKHP-------DMILKEEDFAVFQINWDPKAENIRKIAKKLN-LGL 327 (574)
T ss_pred hHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhCC-------CeEeeHhhhhhheecCCcchhhHHHHHHHhC-CCc
Confidence 34455688889999999999999887766665555431 2222222222 23788999999999999 999
Q ss_pred CceEEEcCCcccchhhhhhcCC
Q 039449 191 EEALHIGDSFRKDYVPAKSVGM 212 (253)
Q Consensus 191 ~~~~~iGD~~~~Di~~a~~~G~ 212 (253)
+..+|++|++ ...+--++-+-
T Consensus 328 dSmvFiDD~p-~ErE~vk~~~~ 348 (574)
T COG3882 328 DSMVFIDDNP-AERELVKRELP 348 (574)
T ss_pred cceEEecCCH-HHHHHHHhcCc
Confidence 9999999999 78888887775
No 191
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=97.34 E-value=0.0015 Score=60.54 Aligned_cols=127 Identities=9% Similarity=0.039 Sum_probs=79.7
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcc-e---------------------------------
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTE-W--------------------------------- 159 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~-f--------------------------------- 159 (253)
++.|++.+.++.|++.|++++++|+.....+..+.+..|+-.... .
T Consensus 631 ~lq~~v~etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 710 (1057)
T TIGR01652 631 KLQEGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITSESLDATRSVEAAIKFGLEGTSEEFNNLG 710 (1057)
T ss_pred hhhhccHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCCCCeEEEEecCchhhhHHHHHHHHHHHHHHHHhhhhhc
Confidence 577999999999999999999999998888777776666643100 0
Q ss_pred -----eEeeeccccC-c---------------------cCCCHHHHHHHHHHhCCCC-CCceEEEcCCcccchhhhhhcC
Q 039449 160 -----DFGVFSGLEG-V---------------------EKPDPRIYEIALERAGNIA-PEEALHIGDSFRKDYVPAKSVG 211 (253)
Q Consensus 160 -----~~~~~~~~~~-~---------------------~kp~~~~~~~~~~~~~~~~-~~~~~~iGD~~~~Di~~a~~~G 211 (253)
..++.+.... . ..-.|+--..+.+.+. -. .+-++++||+. ||+.|.++|.
T Consensus 711 ~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk-~~~~~~vl~iGDG~-ND~~mlk~Ad 788 (1057)
T TIGR01652 711 DSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVK-KSTGKTTLAIGDGA-NDVSMIQEAD 788 (1057)
T ss_pred cCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHH-hcCCCeEEEEeCCC-ccHHHHhhcC
Confidence 0011111000 0 0111111112222232 22 46799999999 9999999998
Q ss_pred CeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHH
Q 039449 212 MHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFL 246 (253)
Q Consensus 212 ~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l 246 (253)
++. .+.+ .... .....+++++.++..|.+++
T Consensus 789 VGI-gi~g--~eg~-qA~~aaD~~i~~F~~L~~ll 819 (1057)
T TIGR01652 789 VGV-GISG--KEGM-QAVMASDFAIGQFRFLTKLL 819 (1057)
T ss_pred eee-EecC--hHHH-HHHHhhhhhhhhHHHHHHHH
Confidence 776 4432 1111 22346788999999888876
No 192
>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.0021 Score=56.06 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=86.4
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCccee----EeeeccccCcc----------------CC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWD----FGVFSGLEGVE----------------KP 173 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~----~~~~~~~~~~~----------------kp 173 (253)
+|.+++.+.++.+++.|++|..+|+.....+..+.+..|+.. .-+ ..++..++..- .-
T Consensus 584 PPR~ev~~ai~~c~~aGIrV~mITGD~~~TA~AI~r~iGi~~--~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~vFaR~ 661 (972)
T KOG0202|consen 584 PPRPEVADAIELCRQAGIRVIMITGDNKETAEAIAREIGIFS--EDEDVSSMALTGSEFDDLSDEELDDAVRRVLVFARA 661 (972)
T ss_pred CCchhHHHHHHHHHHcCCEEEEEcCCCHHHHHHHHHHhCCCc--CCccccccccchhhhhcCCHHHHHHHhhcceEEEec
Confidence 577899999999999999999999999999999999999875 333 12222222110 12
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCC--cccCCHHHHHHHHhh
Q 039449 174 DPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGA--IVLPDLVAVKEFLTS 248 (253)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~--~~i~~l~el~~~l~~ 248 (253)
.|+--.++.+.|. -..+=+.|-||+. ||-.+.+.|.++.++-- .|.... ++..+ +.=+|++-+...+++
T Consensus 662 ~P~HK~kIVeaLq-~~geivAMTGDGV-NDApALK~AdIGIAMG~-~GTdVa---KeAsDMVL~DDnFstIvaAVEE 732 (972)
T KOG0202|consen 662 EPQHKLKIVEALQ-SRGEVVAMTGDGV-NDAPALKKADIGIAMGI-SGTDVA---KEASDMVLADDNFSTIVAAVEE 732 (972)
T ss_pred CchhHHHHHHHHH-hcCCEEEecCCCc-cchhhhhhcccceeecC-CccHhh---HhhhhcEEecCcHHHHHHHHHH
Confidence 3444445555555 4457799999999 99999999999988753 222211 22344 233466666666653
No 193
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.25 E-value=0.0018 Score=49.44 Aligned_cols=49 Identities=20% Similarity=0.201 Sum_probs=39.3
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccc
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGL 167 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~ 167 (253)
|.+.+-|.+|++.|.-+++=|-|+.+.+...++.++|.+ +|+.++..+.
T Consensus 145 ~~v~~sL~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~--~Fd~ii~~G~ 193 (297)
T PF05152_consen 145 PAVYDSLRELKEQGCVLVLWSYGNREHVRHSLKELKLEG--YFDIIICGGN 193 (297)
T ss_pred hHHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHhCCcc--ccEEEEeCCc
Confidence 455677888888888888889888888888888888887 7887766543
No 194
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=97.22 E-value=0.0019 Score=49.71 Aligned_cols=53 Identities=25% Similarity=0.216 Sum_probs=40.5
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhh---hhhhh-cCCCCCcceeEeeecccc
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQD---VILPA-LGVNQGTEWDFGVFSGLE 168 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~---~~l~~-~gl~~~~~f~~~~~~~~~ 168 (253)
.++||+.++|++|+++|.+++++||++....+ ..++. .+++. ..+.+++|...
T Consensus 24 ~~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~--~~~~i~TS~~a 80 (269)
T COG0647 24 EAIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDV--TPDDIVTSGDA 80 (269)
T ss_pred ccCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCC--CHHHeecHHHH
Confidence 77899999999999999999999999886644 44555 45544 55666666543
No 195
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=97.20 E-value=0.0014 Score=55.85 Aligned_cols=106 Identities=18% Similarity=0.206 Sum_probs=77.1
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
++.|++.+.+++|++.|++++++|+.....+....+.+|+. ..-.|+.-..+.+.+. -....+
T Consensus 347 ~lr~~~~~~i~~l~~~gi~~~~ltGD~~~~a~~ia~~lgi~----------------~~~~p~~K~~~v~~l~-~~g~~v 409 (499)
T TIGR01494 347 PLRDDAKETISELREAGIRVIMLTGDNVLTAKAIAKELGIF----------------ARVTPEEKAALVEALQ-KKGRVV 409 (499)
T ss_pred CCchhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCce----------------eccCHHHHHHHHHHHH-HCCCEE
Confidence 57799999999999999999999999999999888888761 1123344445555554 444789
Q ss_pred EEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCccc--CCHHHHHHHHh
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVL--PDLVAVKEFLT 247 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i--~~l~el~~~l~ 247 (253)
.++||.. ||..+.+.+++...+. . ....+.++ .++..+..++.
T Consensus 410 ~~vGDg~-nD~~al~~Advgia~~---------a-~~~adivl~~~~l~~i~~~~~ 454 (499)
T TIGR01494 410 AMTGDGV-NDAPALKKADVGIAMG---------A-KAAADIVLLDDNLSTIVDALK 454 (499)
T ss_pred EEECCCh-hhHHHHHhCCCccccc---------h-HHhCCeEEecCCHHHHHHHHH
Confidence 9999999 9999999998775442 1 22344332 35777666654
No 196
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=97.17 E-value=0.0015 Score=51.20 Aligned_cols=88 Identities=17% Similarity=0.144 Sum_probs=59.7
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchh---hhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQ---DVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAP 190 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~---~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 190 (253)
.++|++.++|++|+++|++++++||+..... ...++.+|+.. ..+.++++ .......+++.. ...
T Consensus 18 ~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~~--~~~~i~ts---------~~~~~~~l~~~~-~~~ 85 (279)
T TIGR01452 18 RVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFNG--LAEQLFSS---------ALCAARLLRQPP-DAP 85 (279)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC--ChhhEecH---------HHHHHHHHHhhC-cCC
Confidence 5678999999999999999999999875433 24567778764 22333222 234445555544 445
Q ss_pred CceEEEcCCcccchhhhhhcCCeEE
Q 039449 191 EEALHIGDSFRKDYVPAKSVGMHAL 215 (253)
Q Consensus 191 ~~~~~iGD~~~~Di~~a~~~G~~~i 215 (253)
.+++++|+.. ....++..|+..+
T Consensus 86 ~~v~~iG~~~--~~~~l~~~g~~~~ 108 (279)
T TIGR01452 86 KAVYVIGEEG--LRAELDAAGIRLA 108 (279)
T ss_pred CEEEEEcCHH--HHHHHHHCCCEEe
Confidence 6799999864 4566677887754
No 197
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=97.09 E-value=0.0052 Score=46.48 Aligned_cols=97 Identities=21% Similarity=0.178 Sum_probs=56.1
Q ss_pred CCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecc-----ccCc----cCC------CH-
Q 039449 112 PYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSG-----LEGV----EKP------DP- 175 (253)
Q Consensus 112 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~-----~~~~----~kp------~~- 175 (253)
.+.+.+|+.++++.|.++++|+.|+|.+-...++..+++.|... ..-. +.|+ +.|. ..| |-
T Consensus 88 ~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~~~~~--~Nv~-VvSN~M~Fd~~g~l~gF~~~lIH~~NKn~ 164 (246)
T PF05822_consen 88 DIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQAGVFH--PNVK-VVSNFMDFDEDGVLVGFKGPLIHTFNKNE 164 (246)
T ss_dssp ---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHTT--B--TTEE-EEEE-EEE-TTSBEEEE-SS---TT-HHH
T ss_pred chhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHcCCCC--CCeE-EEeeeEEECCcceEeecCCCceEEeeCCc
Confidence 35888999999999999999999999999999999999886543 1111 2221 1111 112 11
Q ss_pred HHHH--HHHHHhCCCCCCceEEEcCCcccchhhhhhc-CCeE
Q 039449 176 RIYE--IALERAGNIAPEEALHIGDSFRKDYVPAKSV-GMHA 214 (253)
Q Consensus 176 ~~~~--~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~-G~~~ 214 (253)
..+. ...+.+. .+.+++..||+. -|+.|+.-+ ....
T Consensus 165 ~~l~~~~~~~~~~--~R~NvlLlGDsl-gD~~Ma~G~~~~~~ 203 (246)
T PF05822_consen 165 SALEDSPYFKQLK--KRTNVLLLGDSL-GDLHMADGVPDEEN 203 (246)
T ss_dssp HHHTTHHHHHCTT--T--EEEEEESSS-GGGGTTTT-S--SE
T ss_pred ccccCchHHHHhc--cCCcEEEecCcc-CChHhhcCCCcccc
Confidence 1111 1112222 567899999999 799999877 4443
No 198
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=96.99 E-value=0.0011 Score=49.29 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCEEEEEeCCCcchhhhhhhh
Q 039449 120 QPFLRWAREKGLIVGIISNAEYRYQDVILPA 150 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~ 150 (253)
.+.|++|+++|.+++++|+.....+...++.
T Consensus 23 ~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~ 53 (204)
T TIGR01484 23 IEALERLREAGVKVVLVTGRSLAEIKELLKQ 53 (204)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHHh
Confidence 3555566666666666666666655555544
No 199
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=96.88 E-value=0.00099 Score=47.46 Aligned_cols=82 Identities=21% Similarity=0.227 Sum_probs=56.7
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCc
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEE 192 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 192 (253)
+.+.||+.++|+++.+. +.++|.|.+....++.+++.+.-. ..+|..+++.+.....+.. . .+-++.++ .+.++
T Consensus 35 v~~RP~l~~FL~~l~~~-~ev~i~T~~~~~ya~~v~~~ldp~-~~~~~~~~~r~~~~~~~~~--~-~KdL~~l~-~~~~~ 108 (159)
T PF03031_consen 35 VKLRPGLDEFLEELSKH-YEVVIWTSASEEYAEPVLDALDPN-GKLFSRRLYRDDCTFDKGS--Y-IKDLSKLG-RDLDN 108 (159)
T ss_dssp EEE-TTHHHHHHHHHHH-CEEEEE-SS-HHHHHHHHHHHTTT-TSSEEEEEEGGGSEEETTE--E-E--GGGSS-S-GGG
T ss_pred EeeCchHHHHHHHHHHh-ceEEEEEeehhhhhhHHHHhhhhh-ccccccccccccccccccc--c-ccchHHHh-hcccc
Confidence 46789999999999766 999999999999999999998763 2378887766544322110 0 13466667 67899
Q ss_pred eEEEcCCc
Q 039449 193 ALHIGDSF 200 (253)
Q Consensus 193 ~~~iGD~~ 200 (253)
+++|+|++
T Consensus 109 vvivDD~~ 116 (159)
T PF03031_consen 109 VVIVDDSP 116 (159)
T ss_dssp EEEEES-G
T ss_pred EEEEeCCH
Confidence 99999999
No 200
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=96.86 E-value=0.0045 Score=46.23 Aligned_cols=80 Identities=13% Similarity=0.067 Sum_probs=62.4
Q ss_pred EEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCC
Q 039449 133 VGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGM 212 (253)
Q Consensus 133 ~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~ 212 (253)
=++||++.-...-.+.-.+||...+.++.++.+...| |.+.|+.+.+++| -+.-.-++|||+. ....+|+..++
T Consensus 178 NvLVTs~qLVPaLaKcLLy~L~~~f~ieNIYSa~kvG----K~~cFe~I~~Rfg-~p~~~f~~IGDG~-eEe~aAk~l~w 251 (274)
T TIGR01658 178 NVLVTSGQLIPSLAKCLLFRLDTIFRIENVYSSIKVG----KLQCFKWIKERFG-HPKVRFCAIGDGW-EECTAAQAMNW 251 (274)
T ss_pred EEEEEcCccHHHHHHHHHhccCCccccccccchhhcc----hHHHHHHHHHHhC-CCCceEEEeCCCh-hHHHHHHhcCC
Confidence 3678877766655566667888844445555555444 4689999999999 7678899999999 68999999999
Q ss_pred eEEEEc
Q 039449 213 HALLVD 218 (253)
Q Consensus 213 ~~i~~~ 218 (253)
+++-+.
T Consensus 252 PFw~I~ 257 (274)
T TIGR01658 252 PFVKID 257 (274)
T ss_pred CeEEee
Confidence 999887
No 201
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=96.86 E-value=0.0021 Score=49.99 Aligned_cols=36 Identities=11% Similarity=0.014 Sum_probs=24.8
Q ss_pred CChHHHHHHHHH-cCCEEEEEeCCCcchhhhhhhhcC
Q 039449 117 PDSQPFLRWARE-KGLIVGIISNAEYRYQDVILPALG 152 (253)
Q Consensus 117 ~~~~~~l~~l~~-~g~~~~i~s~~~~~~~~~~l~~~g 152 (253)
+...+.|+.|++ .|++++|+|+.+...+...++.++
T Consensus 39 ~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~ 75 (266)
T PRK10187 39 DNILQGLQLLATANDGALALISGRSMVELDALAKPYR 75 (266)
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCccc
Confidence 455566777776 577888888888777766665444
No 202
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=96.78 E-value=0.0057 Score=48.76 Aligned_cols=98 Identities=19% Similarity=0.236 Sum_probs=64.3
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcch------------hhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHH
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRY------------QDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIA 181 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~------------~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~ 181 (253)
.++|.+..=++.+.+.|+.++|.||..... ++.+...+++. |...........+||..-+++..
T Consensus 104 ~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~~~~~f~~Ki~~i~anl~vP----i~~~~A~~~~~yRKP~tGMwe~~ 179 (422)
T KOG2134|consen 104 ILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKLELEEFKKKIKAIVANLGVP----IQLLAAIIKGKYRKPSTGMWEFL 179 (422)
T ss_pred eeccccchhhhhhccCCeEEEEEecccccccCcchHHHHHHHHHHHHHhcCCc----eEEeeeccCCcccCcchhHHHHH
Confidence 345666777888889999999999885421 33444445554 33322222335679999999998
Q ss_pred HHHhC---CCCCCceEEEcCCc--------------ccchhhhhhcCCeEE
Q 039449 182 LERAG---NIAPEEALHIGDSF--------------RKDYVPAKSVGMHAL 215 (253)
Q Consensus 182 ~~~~~---~~~~~~~~~iGD~~--------------~~Di~~a~~~G~~~i 215 (253)
.+.++ .|....+.++||-. ..|+..|.++|+...
T Consensus 180 ~~~~nd~~~Isek~s~fvgdaagr~~~~~~~kkd~S~~D~~FAaN~gvkF~ 230 (422)
T KOG2134|consen 180 KRLENDSVEISEKASIFVGDAAGRPLDALRRKKDHSSADRKFAANAGVKFK 230 (422)
T ss_pred HHHhhccceeeechhhhhhhhccCccccccCcccccHHHHHHHHhcCCccC
Confidence 87775 14455566887732 147778888888754
No 203
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=96.69 E-value=0.014 Score=44.17 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=48.6
Q ss_pred CEEEEEeCCCcchhhhhhh---hcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhh
Q 039449 131 LIVGIISNAEYRYQDVILP---ALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPA 207 (253)
Q Consensus 131 ~~~~i~s~~~~~~~~~~l~---~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a 207 (253)
+++++||..+....++.++ .+|+.- +..++-+.. .| . .+++.++ |+ +|++|.. .-++.|
T Consensus 187 iRtalVTAR~apah~RvI~TLr~Wgv~v----DEafFLgG~--~K--~----~vL~~~~---ph--IFFDDQ~-~H~~~a 248 (264)
T PF06189_consen 187 IRTALVTARSAPAHERVIRTLRSWGVRV----DEAFFLGGL--PK--G----PVLKAFR---PH--IFFDDQD-GHLESA 248 (264)
T ss_pred eEEEEEEcCCCchhHHHHHHHHHcCCcH----hHHHHhCCC--ch--h----HHHHhhC---CC--EeecCch-hhhhHh
Confidence 7899999998876555554 456543 322222222 22 2 4677777 33 9999999 799888
Q ss_pred hhcCCeEEEEcCCCC
Q 039449 208 KSVGMHALLVDRFKT 222 (253)
Q Consensus 208 ~~~G~~~i~~~~~~~ 222 (253)
. .+++++.|+ ++.
T Consensus 249 ~-~~vps~hVP-~gv 261 (264)
T PF06189_consen 249 S-KVVPSGHVP-YGV 261 (264)
T ss_pred h-cCCCEEecc-CCc
Confidence 8 899999998 453
No 204
>KOG2469 consensus IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]
Probab=96.68 E-value=0.083 Score=42.67 Aligned_cols=100 Identities=16% Similarity=0.179 Sum_probs=71.8
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhc---CCCCCcceeEeeecccc---------------C---------
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPAL---GVNQGTEWDFGVFSGLE---------------G--------- 169 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~---gl~~~~~f~~~~~~~~~---------------~--------- 169 (253)
+....++..+++.|.++.++||..-......+... +... +|+.+++.... .
T Consensus 201 ~~~v~~l~~~r~sGKk~fl~Tns~~~ytd~~mt~~~~~dW~~--yfd~v~~~a~Kp~ff~e~~vlreV~t~~g~l~~g~~ 278 (424)
T KOG2469|consen 201 GTIVPLLSMLRDSGKKTFLHTNSDWDYTDIFMAFHYGFDWET--YFDLVETRAAKPGFFHEGTVLREVEPQEGLLKNGDN 278 (424)
T ss_pred CccccchHHHHhhccceEEeeccccchhhHHHHHHhCCCcce--eEEEEEEeccCCccccccceeeeecccccccccccc
Confidence 34555899999999999999999888776555543 4555 77776665311 0
Q ss_pred ------ccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchh-hhhhcCCeEEEEcC
Q 039449 170 ------VEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYV-PAKSVGMHALLVDR 219 (253)
Q Consensus 170 ------~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~-~a~~~G~~~i~~~~ 219 (253)
...+++-....+++.++ ....+++++||+...|+. .-+.-|+.++++.+
T Consensus 279 ~~p~e~~~~ySggs~~~~~~~l~-~~g~diLy~gdHi~~dvl~skk~~~wrt~lv~p 334 (424)
T KOG2469|consen 279 TGPLEQGGVYSGGSLKTVETSMK-VKGKDILYGGDHIWGDVLVSKKRRGWRTVLVAP 334 (424)
T ss_pred CCcchhcccCCcchHHHHHHHhc-ccccceeecccceeeeEEecceecceEEEEEeh
Confidence 11334456667788888 778899999999977776 45666888888773
No 205
>PLN02423 phosphomannomutase
Probab=96.65 E-value=0.0018 Score=49.60 Aligned_cols=43 Identities=14% Similarity=-0.063 Sum_probs=34.2
Q ss_pred ccCCCHHHHHHHHHHhCCCCCCceEEEcC----CcccchhhhhhcCCeEEEEcC
Q 039449 170 VEKPDPRIYEIALERAGNIAPEEALHIGD----SFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 170 ~~kp~~~~~~~~~~~~~~~~~~~~~~iGD----~~~~Di~~a~~~G~~~i~~~~ 219 (253)
.+-.|..+++.++ +++++++||| +. ||++|.+.-|+.++-|.+
T Consensus 186 ~gvnKg~al~~L~------~~~e~~aFGD~~~~~~-ND~eMl~~~~~~~~~~~~ 232 (245)
T PLN02423 186 QGWDKTYCLQFLE------DFDEIHFFGDKTYEGG-NDHEIFESERTIGHTVTS 232 (245)
T ss_pred CCCCHHHHHHHhc------CcCeEEEEeccCCCCC-CcHHHHhCCCcceEEeCC
Confidence 3445666666666 5789999999 68 999999999998888864
No 206
>PLN03190 aminophospholipid translocase; Provisional
Probab=96.63 E-value=0.024 Score=53.08 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=39.3
Q ss_pred CceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHh
Q 039449 191 EEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLT 247 (253)
Q Consensus 191 ~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~ 247 (253)
+-+++|||+. ||+.|.++|.++. .+.+ ....+ .....|+.++.+.-|.++|-
T Consensus 872 ~vtlaIGDGa-NDv~mIq~AdVGI-GIsG--~EG~q-A~~aSDfaI~~Fr~L~rLLl 923 (1178)
T PLN03190 872 DMTLAIGDGA-NDVSMIQMADVGV-GISG--QEGRQ-AVMASDFAMGQFRFLVPLLL 923 (1178)
T ss_pred cEEEEECCCc-chHHHHHhcCeee-eecC--chhHH-HHHhhccchhhhHHHHHHHH
Confidence 4699999999 9999999998776 5542 22122 23467899999999988875
No 207
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=96.52 E-value=0.0032 Score=52.07 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=73.1
Q ss_pred cCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceE
Q 039449 115 VFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEAL 194 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 194 (253)
+.||++|-+.+|++.|++.+.+|+.++-.+..+.+..|+++ +..+.. |+---.++++.. -+.+=+.
T Consensus 448 vK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVDd-------fiAeat------PEdK~~~I~~eQ-~~grlVA 513 (681)
T COG2216 448 VKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDD-------FIAEAT------PEDKLALIRQEQ-AEGRLVA 513 (681)
T ss_pred cchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCchh-------hhhcCC------hHHHHHHHHHHH-hcCcEEE
Confidence 56899999999999999999999999998999999999998 343332 344446677776 6777899
Q ss_pred EEcCCcccchhhhhhcCCeEEEEc
Q 039449 195 HIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 195 ~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
|.||.- ||-.+..++....++=+
T Consensus 514 MtGDGT-NDAPALAqAdVg~AMNs 536 (681)
T COG2216 514 MTGDGT-NDAPALAQADVGVAMNS 536 (681)
T ss_pred EcCCCC-Ccchhhhhcchhhhhcc
Confidence 999999 99999999988766644
No 208
>KOG3128 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=0.01 Score=44.53 Aligned_cols=97 Identities=12% Similarity=0.075 Sum_probs=58.7
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcC-CCCCcceeEee-eccccCc----cCC-------CHHHHH
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALG-VNQGTEWDFGV-FSGLEGV----EKP-------DPRIYE 179 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~g-l~~~~~f~~~~-~~~~~~~----~kp-------~~~~~~ 179 (253)
+.+.+|..+++..|.++++++.++|.+....++.++.+.. +.+..+|-.-+ -..+.+. .+| ....++
T Consensus 137 i~lReg~~~ff~~L~~~~IP~~iFSAGigdiiEev~~q~~~~~pn~k~vSN~~~F~edg~l~gF~~~Lihtfnkn~~v~~ 216 (298)
T KOG3128|consen 137 IALREGYEEFFEALQAHEIPLLIFSAGIGDIIEEVTRQKLVLHPNVKFVSNYMDFDEDGNLCGFSQPLIHTFNKNSSVLQ 216 (298)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEecchHHHHHHHHHHHhccCccHHhhhhhhhhcccchhhhhhHHHHHHHccchHHHH
Confidence 3556789999999999999999999999888877776553 32211110000 0111111 111 111222
Q ss_pred HHHHHhC-CCCCCceEEEcCCcccchhhhhhc
Q 039449 180 IALERAG-NIAPEEALHIGDSFRKDYVPAKSV 210 (253)
Q Consensus 180 ~~~~~~~-~~~~~~~~~iGD~~~~Di~~a~~~ 210 (253)
...+.+. .-+...+++.||+. -|+.|+.-+
T Consensus 217 ~~s~yf~~~~~~~nVillGdsi-gdl~ma~gv 247 (298)
T KOG3128|consen 217 NESEYFHQLAGRVNVILLGDSI-GDLHMADGV 247 (298)
T ss_pred hhhHHHhhccCCceEEEecccc-ccchhhcCC
Confidence 2233332 13567899999999 799998755
No 209
>PLN02580 trehalose-phosphatase
Probab=95.94 E-value=0.011 Score=48.02 Aligned_cols=67 Identities=28% Similarity=0.289 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHhCCCCCCc---eEEEcCCcccchhhhhh-----cCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHH
Q 039449 174 DPRIYEIALERAGNIAPEE---ALHIGDSFRKDYVPAKS-----VGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEF 245 (253)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~---~~~iGD~~~~Di~~a~~-----~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~ 245 (253)
|..+++.+++.++ ++..+ +++|||.. ||..+.+. .|+.. .+.. +.. .....+.+++.+|+..+
T Consensus 302 KG~Av~~Ll~~~g-~~~~d~~~pi~iGDD~-TDedmF~~L~~~~~G~~I-~Vgn-~~~-----~t~A~y~L~dp~eV~~~ 372 (384)
T PLN02580 302 KGKAVEFLLESLG-LSNCDDVLPIYIGDDR-TDEDAFKVLREGNRGYGI-LVSS-VPK-----ESNAFYSLRDPSEVMEF 372 (384)
T ss_pred HHHHHHHHHHhcC-CCcccceeEEEECCCc-hHHHHHHhhhccCCceEE-EEec-CCC-----CccceEEcCCHHHHHHH
Confidence 4566667777777 66553 38999999 99999996 35543 3331 111 11245899999999998
Q ss_pred Hhhh
Q 039449 246 LTSE 249 (253)
Q Consensus 246 l~~~ 249 (253)
|+.+
T Consensus 373 L~~L 376 (384)
T PLN02580 373 LKSL 376 (384)
T ss_pred HHHH
Confidence 8764
No 210
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=95.82 E-value=0.03 Score=43.13 Aligned_cols=102 Identities=13% Similarity=0.163 Sum_probs=63.1
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCC---cchhhhhhhhcCCCCCcceeEeeeccccC-----ccCCC-------HHHH
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAE---YRYQDVILPALGVNQGTEWDFGVFSGLEG-----VEKPD-------PRIY 178 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~---~~~~~~~l~~~gl~~~~~f~~~~~~~~~~-----~~kp~-------~~~~ 178 (253)
.+.|++.+.+++|+++|++++++||+. .......++.+|++. ..+.++++...- ..++. ...+
T Consensus 17 ~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~--~~~~iit~~~~~~~~l~~~~~~~~v~~lg~~~l 94 (249)
T TIGR01457 17 ERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPA--TLETVFTASMATADYMNDLKLEKTVYVIGEEGL 94 (249)
T ss_pred eeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC--ChhhEeeHHHHHHHHHHhcCCCCEEEEEcChhH
Confidence 445789999999999999999999955 344566778888876 556666654321 11111 1345
Q ss_pred HHHHHHhCCCC----CCceEEEcCCcccchhhh------hhcCCeEEEEc
Q 039449 179 EIALERAGNIA----PEEALHIGDSFRKDYVPA------KSVGMHALLVD 218 (253)
Q Consensus 179 ~~~~~~~~~~~----~~~~~~iGD~~~~Di~~a------~~~G~~~i~~~ 218 (253)
...++.+| +. ..+.+++|.....+..-. .+.|+..+..+
T Consensus 95 ~~~l~~~g-~~~~~~~~~~Vvvg~~~~~~y~~l~~a~~~l~~g~~~i~tN 143 (249)
T TIGR01457 95 KEAIKEAG-YVEDKEKPDYVVVGLDRQIDYEKFATATLAIRKGAHFIGTN 143 (249)
T ss_pred HHHHHHcC-CEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCeEEEEC
Confidence 56667666 43 235666766432333221 24588866666
No 211
>PRK10444 UMP phosphatase; Provisional
Probab=95.81 E-value=0.089 Score=40.47 Aligned_cols=102 Identities=15% Similarity=0.178 Sum_probs=61.7
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhh---hhhhhcCCCCCcceeEeeeccccCc----cC-------CCHHHHH
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQD---VILPALGVNQGTEWDFGVFSGLEGV----EK-------PDPRIYE 179 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~---~~l~~~gl~~~~~f~~~~~~~~~~~----~k-------p~~~~~~ 179 (253)
.+.|++.++++.|+++|++++++||+...... ..++.+|+.- --+.++++...-. .+ .-...+.
T Consensus 17 ~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~--~~~~i~ts~~~~~~~L~~~~~~~v~~~g~~~l~ 94 (248)
T PRK10444 17 VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDV--PDSVFYTSAMATADFLRRQEGKKAYVIGEGALI 94 (248)
T ss_pred eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCC--CHhhEecHHHHHHHHHHhCCCCEEEEEcCHHHH
Confidence 56799999999999999999999999886544 4455567743 2344455432110 00 0113444
Q ss_pred HHHHHhCCCC----CCceEEEcCCcccchhhhh------hcCCeEEEEc
Q 039449 180 IALERAGNIA----PEEALHIGDSFRKDYVPAK------SVGMHALLVD 218 (253)
Q Consensus 180 ~~~~~~~~~~----~~~~~~iGD~~~~Di~~a~------~~G~~~i~~~ 218 (253)
..++..| +. ..+++++|.....+..... +-|...+..+
T Consensus 95 ~~l~~~g-~~~~~~~~~~Vvvg~~~~~~~~~l~~a~~~l~~g~~~i~~n 142 (248)
T PRK10444 95 HELYKAG-FTITDINPDFVIVGETRSYNWDMMHKAAYFVANGARFIATN 142 (248)
T ss_pred HHHHHCc-CEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEEC
Confidence 5555555 33 2367888877633433222 3387777766
No 212
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=95.81 E-value=0.065 Score=41.87 Aligned_cols=86 Identities=13% Similarity=0.116 Sum_probs=51.6
Q ss_pred ccCCChHHHHHHHHHc----CCEEEEEeCCCcch----hhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHh
Q 039449 114 TVFPDSQPFLRWAREK----GLIVGIISNAEYRY----QDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERA 185 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~----g~~~~i~s~~~~~~----~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~ 185 (253)
++.|++.+.++.|.+. .++.+++||+.-.. +..+-+.+|..- ....+-.+ . .-|+.+. +
T Consensus 51 ~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~E~~rA~~lS~~Lgv~V--------s~dqviqS-H--sP~r~l~-~- 117 (389)
T KOG1618|consen 51 RPIPGALKALRRLVDNQGQLKIPFVFLTNGGGILESSRAQELSALLGVEV--------SADQVIQS-H--SPFRLLV-E- 117 (389)
T ss_pred CCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcchhhHHHHHHHhhCCcc--------CHHHHHhh-c--ChHHHHh-h-
Confidence 4456677777777665 58999999996643 333444455542 22222111 0 1232333 2
Q ss_pred CCCCCCceEEEcCCcccchhhhhhcCCeEEE
Q 039449 186 GNIAPEEALHIGDSFRKDYVPAKSVGMHALL 216 (253)
Q Consensus 186 ~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~ 216 (253)
..-+.++++|+.. --..|+..|.+.|.
T Consensus 118 --~~~k~vLv~G~~~--vr~vAegyGFk~Vv 144 (389)
T KOG1618|consen 118 --YHYKRVLVVGQGS--VREVAEGYGFKNVV 144 (389)
T ss_pred --hhhceEEEecCCc--HHHHhhccCcccee
Confidence 2347899999766 57788899998764
No 213
>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]
Probab=95.77 E-value=0.084 Score=45.23 Aligned_cols=95 Identities=13% Similarity=0.008 Sum_probs=54.1
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcch---hhhhhhhcCCCCCcceeE-eeecc---------ccCccCC---CHHHHHHH
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRY---QDVILPALGVNQGTEWDF-GVFSG---------LEGVEKP---DPRIYEIA 181 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~gl~~~~~f~~-~~~~~---------~~~~~kp---~~~~~~~~ 181 (253)
|+..+...++++||++..+|....-+ .+..|+.+.-+...+-+. ++.+. ++-..|| |..++..+
T Consensus 562 GVAkLyt~Ik~NGYk~lyLSARaIgQA~~TR~yL~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkPe~FKIAcL~DI 641 (738)
T KOG2116|consen 562 GVAKLYTKIKENGYKILYLSARAIGQADSTRQYLKNVEQDGKKLPDGPVILSPDSLFAALHREVIERKPEVFKIACLTDI 641 (738)
T ss_pred hHHHHHHHHHhCCeeEEEEehhhhhhhHHHHHHHHHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCchhhhHHHHHHH
Confidence 66677777788888888888775543 334444432222111111 12221 1222355 33444454
Q ss_pred HHHhCCCCCC-ceEEEcCCcccchhhhhhcCCeE
Q 039449 182 LERAGNIAPE-EALHIGDSFRKDYVPAKSVGMHA 214 (253)
Q Consensus 182 ~~~~~~~~~~-~~~~iGD~~~~Di~~a~~~G~~~ 214 (253)
.+.+. -+.+ =...||++. +|+..=+++|++.
T Consensus 642 k~LF~-p~~nPFYAgFGNR~-TDviSY~~VgVP~ 673 (738)
T KOG2116|consen 642 KNLFP-PSGNPFYAGFGNRI-TDVISYRQVGVPL 673 (738)
T ss_pred HHhcC-CCCCceeeecCCCc-ccceeeeeecCCc
Confidence 55554 2222 366799999 9999999999987
No 214
>PLN02580 trehalose-phosphatase
Probab=95.75 E-value=0.044 Score=44.65 Aligned_cols=30 Identities=27% Similarity=0.225 Sum_probs=19.5
Q ss_pred ceEEEEecCCceeccCC-----CHHHHHHHHHHHc
Q 039449 7 LRCITVDVTGTLLAYKG-----ELGDYYCMAAKSV 36 (253)
Q Consensus 7 ~k~i~fD~DGTL~~~~~-----~~~~~~~~~~~~~ 36 (253)
--+++||+||||.+... .....+..+++++
T Consensus 119 ~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~aL~~L 153 (384)
T PLN02580 119 KIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNV 153 (384)
T ss_pred CeEEEEecCCccCCCCCCcccccCCHHHHHHHHHH
Confidence 45889999999986543 2234455555554
No 215
>PLN02151 trehalose-phosphatase
Probab=95.59 E-value=0.018 Score=46.30 Aligned_cols=68 Identities=25% Similarity=0.244 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhCCCCCC---ceEEEcCCcccchhhhhhcCC----eEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHh
Q 039449 175 PRIYEIALERAGNIAPE---EALHIGDSFRKDYVPAKSVGM----HALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLT 247 (253)
Q Consensus 175 ~~~~~~~~~~~~~~~~~---~~~~iGD~~~~Di~~a~~~G~----~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~ 247 (253)
..+++.+++.++ .... -++||||.. +|-.+.+.+.- -.|.|.. +.. .....+.+++.+|+..+|+
T Consensus 271 G~Av~~Ll~~~~-~~~~~~~~pvyiGDD~-TDEDaF~~L~~~~~G~gI~Vg~-~~k-----~T~A~y~L~dp~eV~~~L~ 342 (354)
T PLN02151 271 GKALEFLLESLG-YANCTDVFPIYIGDDR-TDEDAFKILRDKKQGLGILVSK-YAK-----ETNASYSLQEPDEVMEFLE 342 (354)
T ss_pred HHHHHHHHHhcc-cccCCCCeEEEEcCCC-cHHHHHHHHhhcCCCccEEecc-CCC-----CCcceEeCCCHHHHHHHHH
Confidence 344444555444 3222 289999999 99999886521 1244431 111 1134589999999999887
Q ss_pred hhh
Q 039449 248 SEI 250 (253)
Q Consensus 248 ~~~ 250 (253)
.+.
T Consensus 343 ~L~ 345 (354)
T PLN02151 343 RLV 345 (354)
T ss_pred HHH
Confidence 653
No 216
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=95.33 E-value=0.027 Score=43.60 Aligned_cols=51 Identities=20% Similarity=0.136 Sum_probs=39.2
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcch---hhhhhhhcCCCCCcceeEeeecc
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRY---QDVILPALGVNQGTEWDFGVFSG 166 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~gl~~~~~f~~~~~~~ 166 (253)
.+.|++.+.+++|+++|++++++||++... ....++.+|++- -.+.++++.
T Consensus 21 ~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~--~~~~i~ts~ 74 (257)
T TIGR01458 21 VAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDI--SEDEVFTPA 74 (257)
T ss_pred CcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCC--CHHHeEcHH
Confidence 367899999999999999999999987764 555677778764 335555543
No 217
>KOG0206 consensus P-type ATPase [General function prediction only]
Probab=95.32 E-value=1.3 Score=41.47 Aligned_cols=30 Identities=3% Similarity=0.057 Sum_probs=26.7
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcch
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRY 143 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~ 143 (253)
++-+|+.+.+..|++.|++++++|+...+.
T Consensus 651 kLQdgVPetI~~L~~AGIKIWVLTGDK~ET 680 (1151)
T KOG0206|consen 651 KLQDGVPETIAKLAQAGIKIWVLTGDKQET 680 (1151)
T ss_pred hhccCchHHHHHHHHcCCEEEEEcCcHHHH
Confidence 567899999999999999999999996554
No 218
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=95.27 E-value=0.011 Score=40.19 Aligned_cols=105 Identities=18% Similarity=0.147 Sum_probs=62.5
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCc--chhhhhhh----hcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhC
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEY--RYQDVILP----ALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAG 186 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~----~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~ 186 (253)
..+.|++.+++++|.+. +.++|+|.... ...+.+.+ .+..-+ ...+++++..+.- +.+
T Consensus 67 L~V~p~aq~v~keLt~~-y~vYivtaamdhp~s~~dK~eWl~E~FPFi~---~qn~vfCgnKniv------------kaD 130 (180)
T COG4502 67 LGVQPFAQTVLKELTSI-YNVYIVTAAMDHPKSCEDKGEWLKEKFPFIS---YQNIVFCGNKNIV------------KAD 130 (180)
T ss_pred cCccccHHHHHHHHHhh-heEEEEEeccCCchhHHHHHHHHHHHCCCCC---hhhEEEecCCCeE------------Eee
Confidence 36789999999999988 89999998732 22333333 333222 1233444433311 223
Q ss_pred CCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhh
Q 039449 187 NIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 187 ~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~ 249 (253)
++|+|++ ..++..+ |.+ |+.+..... .+....++.||.|+...+...
T Consensus 131 -------ilIDDnp-~nLE~F~--G~k-IlFdA~HN~-----nenRF~Rv~~W~e~eq~ll~~ 177 (180)
T COG4502 131 -------ILIDDNP-LNLENFK--GNK-ILFDAHHNK-----NENRFVRVRDWYEAEQALLES 177 (180)
T ss_pred -------EEecCCc-hhhhhcc--Cce-EEEeccccc-----CccceeeeccHHHHHHHHHHh
Confidence 7899999 5776654 544 444421111 123457899999998666544
No 219
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=95.24 E-value=0.057 Score=48.37 Aligned_cols=67 Identities=21% Similarity=0.150 Sum_probs=49.9
Q ss_pred CCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCC--eEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhh
Q 039449 172 KPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGM--HALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 172 kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~--~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~ 249 (253)
-.|..+++.+++ + ++++.++++||+. ||+.|.+.++. .++.+.. . .....+++.+.+|+..+|+..
T Consensus 656 vnKG~al~~ll~--~-~~~d~vl~~GD~~-nDe~Mf~~~~~~~~~v~vG~-~-------~s~A~~~l~~~~eV~~~L~~l 723 (726)
T PRK14501 656 VNKGRAVRRLLE--A-GPYDFVLAIGDDT-TDEDMFRALPETAITVKVGP-G-------ESRARYRLPSQREVRELLRRL 723 (726)
T ss_pred CCHHHHHHHHHh--c-CCCCEEEEECCCC-ChHHHHHhcccCceEEEECC-C-------CCcceEeCCCHHHHHHHHHHH
Confidence 457788888888 6 7788999999999 99999999742 2333321 1 123458999999998888765
Q ss_pred h
Q 039449 250 I 250 (253)
Q Consensus 250 ~ 250 (253)
.
T Consensus 724 ~ 724 (726)
T PRK14501 724 L 724 (726)
T ss_pred h
Confidence 4
No 220
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=95.05 E-value=0.042 Score=42.40 Aligned_cols=43 Identities=12% Similarity=0.104 Sum_probs=29.1
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcC---CeEEEEc
Q 039449 174 DPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVG---MHALLVD 218 (253)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G---~~~i~~~ 218 (253)
|..++..+++... .+..-+++.||.. +|-.+...+. -.++-+.
T Consensus 183 KG~a~~~i~~~~~-~~~~~~~~aGDD~-TDE~~F~~v~~~~~~~v~v~ 228 (266)
T COG1877 183 KGAAIKYIMDELP-FDGRFPIFAGDDL-TDEDAFAAVNKLDSITVKVG 228 (266)
T ss_pred hHHHHHHHHhcCC-CCCCcceecCCCC-ccHHHHHhhccCCCceEEec
Confidence 4455555565555 4444699999999 8999888886 4445444
No 221
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=94.87 E-value=0.038 Score=49.45 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=27.1
Q ss_pred CChHHHHHHHHH-cCCEEEEEeCCCcchhhhhhhhcC
Q 039449 117 PDSQPFLRWARE-KGLIVGIISNAEYRYQDVILPALG 152 (253)
Q Consensus 117 ~~~~~~l~~l~~-~g~~~~i~s~~~~~~~~~~l~~~g 152 (253)
+.+.+.|+.|.+ .|..++++|+.....++..+..++
T Consensus 517 ~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~ 553 (726)
T PRK14501 517 KELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLP 553 (726)
T ss_pred HHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCC
Confidence 455677888888 488999999998887776665544
No 222
>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]
Probab=94.85 E-value=0.32 Score=37.85 Aligned_cols=92 Identities=14% Similarity=0.073 Sum_probs=58.2
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhh---hcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILP---ALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAP 190 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~---~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 190 (253)
.+.||+.+.++.|++.|.++.++||++....+..++ .+|+.. +..+.. ..| ......-+++.. ...
T Consensus 38 ~~ipGs~e~l~~L~~~gK~i~fvTNNStksr~~y~kK~~~lG~~~-------v~e~~i--~ss-a~~~a~ylk~~~-~~~ 106 (306)
T KOG2882|consen 38 KPIPGSPEALNLLKSLGKQIIFVTNNSTKSREQYMKKFAKLGFNS-------VKEENI--FSS-AYAIADYLKKRK-PFG 106 (306)
T ss_pred CCCCChHHHHHHHHHcCCcEEEEeCCCcchHHHHHHHHHHhCccc-------cCcccc--cCh-HHHHHHHHHHhC-cCC
Confidence 667999999999999999999999999877655444 455543 111111 111 122223333333 345
Q ss_pred CceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 191 EEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 191 ~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
+.+.++|-.. =-+.++++|+......
T Consensus 107 k~Vyvig~~g--i~~eL~~aG~~~~g~~ 132 (306)
T KOG2882|consen 107 KKVYVIGEEG--IREELDEAGFEYFGGG 132 (306)
T ss_pred CeEEEecchh--hhHHHHHcCceeecCC
Confidence 6788887665 3556778887666555
No 223
>KOG0210 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=94.63 E-value=0.59 Score=40.87 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=34.2
Q ss_pred CCceEEEcCCcccchhhhhhcCCeEEEEc-CCCCCChhhhhhcCCcccCCHHHHHHHHh
Q 039449 190 PEEALHIGDSFRKDYVPAKSVGMHALLVD-RFKTPDAKEWRKSGAIVLPDLVAVKEFLT 247 (253)
Q Consensus 190 ~~~~~~iGD~~~~Di~~a~~~G~~~i~~~-~~~~~~~~~~~~~~~~~i~~l~el~~~l~ 247 (253)
...+..|||+- ||+.|...|.++ |++. ..| .+..-+.++.|..+..+.++|.
T Consensus 781 ~krvc~IGDGG-NDVsMIq~A~~G-iGI~gkEG----kQASLAADfSItqF~Hv~rLLl 833 (1051)
T KOG0210|consen 781 GKRVCAIGDGG-NDVSMIQAADVG-IGIVGKEG----KQASLAADFSITQFSHVSRLLL 833 (1051)
T ss_pred CceEEEEcCCC-ccchheeecccc-eeeecccc----cccchhccccHHHHHHHHHHhh
Confidence 36899999999 999998887655 3333 112 1112345677777777766664
No 224
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=94.03 E-value=0.21 Score=45.49 Aligned_cols=70 Identities=20% Similarity=0.162 Sum_probs=50.6
Q ss_pred CCCHHHHHHHHHH---hCCCCCCceEEEcCCcccchhhhhhcCC-------------eEEEEcCCCCCChhhhhhcCCcc
Q 039449 172 KPDPRIYEIALER---AGNIAPEEALHIGDSFRKDYVPAKSVGM-------------HALLVDRFKTPDAKEWRKSGAIV 235 (253)
Q Consensus 172 kp~~~~~~~~~~~---~~~~~~~~~~~iGD~~~~Di~~a~~~G~-------------~~i~~~~~~~~~~~~~~~~~~~~ 235 (253)
-.|..+++.+++. ++ ++++.+++|||+. ||..|.+.++- -+|-|. .+ .....+.
T Consensus 761 vnKG~Al~~Ll~~~~~~g-~~~d~vl~~GDD~-nDedMF~~~~~~~~g~~~~~~~~~~~v~VG-~~-------~S~A~y~ 830 (854)
T PLN02205 761 VSKGLVAKRLLSIMQERG-MLPDFVLCIGDDR-SDEDMFEVITSSMAGPSIAPRAEVFACTVG-QK-------PSKAKYY 830 (854)
T ss_pred CCHHHHHHHHHHHHHhcC-CCcccEEEEcCCc-cHHHHHHHhhhhccCCcccccccceeEEEC-CC-------CccCeEe
Confidence 4566788888754 57 8899999999999 99999998862 223332 11 1223478
Q ss_pred cCCHHHHHHHHhhhhh
Q 039449 236 LPDLVAVKEFLTSEIS 251 (253)
Q Consensus 236 i~~l~el~~~l~~~~~ 251 (253)
+++.+|+.++|..+.+
T Consensus 831 L~d~~eV~~lL~~L~~ 846 (854)
T PLN02205 831 LDDTAEIVRLMQGLAS 846 (854)
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999886543
No 225
>PLN02423 phosphomannomutase
Probab=93.73 E-value=0.095 Score=40.25 Aligned_cols=32 Identities=28% Similarity=0.222 Sum_probs=23.3
Q ss_pred cCceEEE-EecCCceeccCCCHHHHHHHHHHHc
Q 039449 5 SRLRCIT-VDVTGTLLAYKGELGDYYCMAAKSV 36 (253)
Q Consensus 5 ~~~k~i~-fD~DGTL~~~~~~~~~~~~~~~~~~ 36 (253)
++++.++ ||+||||++....+.+....+++++
T Consensus 4 ~~~~~i~~~D~DGTLl~~~~~i~~~~~~ai~~l 36 (245)
T PLN02423 4 RKPGVIALFDVDGTLTAPRKEATPEMLEFMKEL 36 (245)
T ss_pred CccceEEEEeccCCCcCCCCcCCHHHHHHHHHH
Confidence 3567555 9999999998876666666665554
No 226
>PTZ00174 phosphomannomutase; Provisional
Probab=93.68 E-value=0.11 Score=39.97 Aligned_cols=36 Identities=17% Similarity=0.157 Sum_probs=27.2
Q ss_pred cCceEEEEecCCceeccCCCHHHHHHHHHHH---cCCCC
Q 039449 5 SRLRCITVDVTGTLLAYKGELGDYYCMAAKS---VGLPC 40 (253)
Q Consensus 5 ~~~k~i~fD~DGTL~~~~~~~~~~~~~~~~~---~g~~~ 40 (253)
|++|+|+||+||||+++...+.+...+++++ .|+..
T Consensus 3 ~~~klia~DlDGTLL~~~~~is~~~~~ai~~l~~~Gi~~ 41 (247)
T PTZ00174 3 MKKTILLFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKI 41 (247)
T ss_pred CCCeEEEEECcCCCcCCCCCCCHHHHHHHHHHHHCCCEE
Confidence 5689999999999999988666666665554 45543
No 227
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=93.64 E-value=0.53 Score=34.67 Aligned_cols=88 Identities=17% Similarity=0.184 Sum_probs=53.4
Q ss_pred cCCChHHHHHHHHHcCCEEEEEeCCCcch---hhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCC
Q 039449 115 VFPDSQPFLRWAREKGLIVGIISNAEYRY---QDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPE 191 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 191 (253)
..||+.+.++.|+.++.++-.+||...+. +...|+++|+.- ..++.-.+.| +-.+.+++-+ +.|
T Consensus 24 avpga~eAl~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v--------~eeei~tsl~---aa~~~~~~~~-lrP- 90 (262)
T KOG3040|consen 24 AVPGAVEALKRLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDV--------SEEEIFTSLP---AARQYLEENQ-LRP- 90 (262)
T ss_pred cCCCHHHHHHHHHhcCceEEEEecCcchhHHHHHHHHHHhCCCc--------cHHHhcCccH---HHHHHHHhcC-CCc-
Confidence 35899999999999999999999998866 445566667653 2222222222 3334455544 433
Q ss_pred ceEEEcCCcccchhhhhhcCCeEEE
Q 039449 192 EALHIGDSFRKDYVPAKSVGMHALL 216 (253)
Q Consensus 192 ~~~~iGD~~~~Di~~a~~~G~~~i~ 216 (253)
-++|.|....|........-.+|.
T Consensus 91 -~l~v~d~a~~dF~gidTs~pn~VV 114 (262)
T KOG3040|consen 91 -YLIVDDDALEDFDGIDTSDPNCVV 114 (262)
T ss_pred -eEEEcccchhhCCCccCCCCCeEE
Confidence 355555555565554444444443
No 228
>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]
Probab=93.52 E-value=0.88 Score=40.77 Aligned_cols=124 Identities=14% Similarity=0.133 Sum_probs=79.9
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCccee-Ee-eeccccC------------------ccCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWD-FG-VFSGLEG------------------VEKP 173 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~-~~-~~~~~~~------------------~~kp 173 (253)
+..||+.+.++.+++.|+.+-.+|+.+...++.+...=|+.. .-. +. +...++. .+.|
T Consensus 647 PvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt--~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlARSSP 724 (1034)
T KOG0204|consen 647 PVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILT--PGGDFLALEGKEFRELSQEERDKIWPKLRVLARSSP 724 (1034)
T ss_pred CCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHccccc--CCCccceecchhhhhcCHHHHHhhhhhheeeecCCC
Confidence 467999999999999999999999999988888888777654 111 11 1111111 1112
Q ss_pred -CHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCc--ccCCHHHHHHHHhh
Q 039449 174 -DPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAI--VLPDLVAVKEFLTS 248 (253)
Q Consensus 174 -~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~--~i~~l~el~~~l~~ 248 (253)
+...+.+.+++.| +-+.+-||+- ||-.+.++|.+..++-- .| .+..++..+. .=++++.+...+..
T Consensus 725 ~DK~lLVk~L~~~g----~VVAVTGDGT-NDaPALkeADVGlAMGI-aG---TeVAKEaSDIIi~DDNFssIVk~v~W 793 (1034)
T KOG0204|consen 725 NDKHLLVKGLIKQG----EVVAVTGDGT-NDAPALKEADVGLAMGI-AG---TEVAKEASDIIILDDNFSSIVKAVKW 793 (1034)
T ss_pred chHHHHHHHHHhcC----cEEEEecCCC-CCchhhhhcccchhccc-cc---hhhhhhhCCeEEEcCchHHHHHHHHh
Confidence 2233334444444 4566779999 99999999999887633 12 2222345663 33577777777654
No 229
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=92.97 E-value=0.57 Score=31.42 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=55.1
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcch-hhhhhhhcCCCCCcceeEeeecc-------ccCccCCCHHHHHHHHHH
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRY-QDVILPALGVNQGTEWDFGVFSG-------LEGVEKPDPRIYEIALER 184 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~gl~~~~~f~~~~~~~-------~~~~~kp~~~~~~~~~~~ 184 (253)
+..|+++...|..|+++|+.++++|++.... +...|+.+.+.. ..++.+. ..+ ...+-..|..+-+.
T Consensus 43 ~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~----~Gvlkps~e~ft~~~~g-~gsklghfke~~n~ 117 (144)
T KOG4549|consen 43 MIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQ----TGVLKPSLEEFTFEAVG-DGSKLGHFKEFTNN 117 (144)
T ss_pred eeeccchhHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhccCc----ccccchhhhcCceeeec-CcccchhHHHHhhc
Confidence 3678999999999999999999999986644 566776665543 1111111 111 12233456666666
Q ss_pred hCCCCCCceEEEcCCcc
Q 039449 185 AGNIAPEEALHIGDSFR 201 (253)
Q Consensus 185 ~~~~~~~~~~~iGD~~~ 201 (253)
.+ +...+..++.|..+
T Consensus 118 s~-~~~k~~~~fdDesr 133 (144)
T KOG4549|consen 118 SN-SIEKNKQVFDDESR 133 (144)
T ss_pred cC-cchhceeeeccccc
Confidence 67 77778888888763
No 230
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=92.60 E-value=0.36 Score=38.74 Aligned_cols=81 Identities=14% Similarity=0.083 Sum_probs=58.9
Q ss_pred CEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhc
Q 039449 131 LIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSV 210 (253)
Q Consensus 131 ~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~ 210 (253)
+--+++|+..-...-.++-..||...+.++.++.+...| |...|+.+.+++| - .-.-++|||.. ....+|++.
T Consensus 371 cvnVlvTttqLipalaKvLL~gLg~~fpiENIYSa~kiG----KescFerI~~RFg-~-K~~yvvIgdG~-eee~aAK~l 443 (468)
T KOG3107|consen 371 CVNVLVTTTQLIPALAKVLLYGLGSSFPIENIYSATKIG----KESCFERIQSRFG-R-KVVYVVIGDGV-EEEQAAKAL 443 (468)
T ss_pred eeEEEEeccchhHHHHHHHHHhcCCcccchhhhhhhhcc----HHHHHHHHHHHhC-C-ceEEEEecCcH-HHHHHHHhh
Confidence 344678877665544455556777633445554444444 4589999999999 4 66788999998 589999999
Q ss_pred CCeEEEEc
Q 039449 211 GMHALLVD 218 (253)
Q Consensus 211 G~~~i~~~ 218 (253)
.|++.-++
T Consensus 444 n~PfwrI~ 451 (468)
T KOG3107|consen 444 NMPFWRIS 451 (468)
T ss_pred CCceEeec
Confidence 99998887
No 231
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=92.55 E-value=0.069 Score=37.94 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=13.3
Q ss_pred eEEEEecCCceeccCC
Q 039449 8 RCITVDVTGTLLAYKG 23 (253)
Q Consensus 8 k~i~fD~DGTL~~~~~ 23 (253)
|+++||+||||+++..
T Consensus 1 k~LVlDLD~TLv~~~~ 16 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSS 16 (159)
T ss_dssp EEEEEE-CTTTEEEES
T ss_pred CEEEEeCCCcEEEEee
Confidence 6899999999999765
No 232
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=92.46 E-value=0.45 Score=36.32 Aligned_cols=85 Identities=24% Similarity=0.194 Sum_probs=50.0
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhh---hhhhh-cCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQD---VILPA-LGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIA 189 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~---~~l~~-~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~ 189 (253)
.++|++.+.++.++++|+++.++||+...... ..+.. +|+.- -.+.++.+... ....+++.. +
T Consensus 14 ~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~--~~~~iits~~~---------~~~~l~~~~--~ 80 (236)
T TIGR01460 14 KPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDV--SPDQIITSGSV---------TKDLLRQRF--E 80 (236)
T ss_pred ccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCC--CHHHeeeHHHH---------HHHHHHHhC--C
Confidence 55789999999999999999999988754432 33444 56653 34444444322 222222222 1
Q ss_pred CCceEEEcCCcccchhhhhhcCCe
Q 039449 190 PEEALHIGDSFRKDYVPAKSVGMH 213 (253)
Q Consensus 190 ~~~~~~iGD~~~~Di~~a~~~G~~ 213 (253)
.+.++++|... ....++..|+.
T Consensus 81 ~~~v~v~G~~~--~~~~l~~~g~~ 102 (236)
T TIGR01460 81 GEKVYVIGVGE--LRESLEGLGFR 102 (236)
T ss_pred CCEEEEECCHH--HHHHHHHcCCc
Confidence 23467777532 44555565643
No 233
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=92.30 E-value=0.76 Score=37.81 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=17.7
Q ss_pred eEEEcCCcccchhhhhhcCCeE
Q 039449 193 ALHIGDSFRKDYVPAKSVGMHA 214 (253)
Q Consensus 193 ~~~iGD~~~~Di~~a~~~G~~~ 214 (253)
..-+|+.. +|+..=+.+|++.
T Consensus 497 yAGFGNri-TDvisY~~vgIp~ 517 (580)
T COG5083 497 YAGFGNRI-TDVISYSNVGIPK 517 (580)
T ss_pred hccccccc-hhheeeccccCCh
Confidence 34799999 8999999999865
No 234
>KOG0209 consensus P-type ATPase [Inorganic ion transport and metabolism]
Probab=92.04 E-value=0.92 Score=40.58 Aligned_cols=42 Identities=14% Similarity=0.127 Sum_probs=34.0
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVN 154 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 154 (253)
.++.|++.++++.|.+.+++++.+|+.+.-.+..+.+.+|+.
T Consensus 674 CPlK~Ds~~~I~el~~SSH~vvMITGDnpLTAchVak~v~iv 715 (1160)
T KOG0209|consen 674 CPLKPDSKKTIKELNNSSHRVVMITGDNPLTACHVAKEVGIV 715 (1160)
T ss_pred CCCCccHHHHHHHHhccCceEEEEeCCCccchheehheeeee
Confidence 367789999999999999999999999876665556555544
No 235
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=91.91 E-value=1.3 Score=34.94 Aligned_cols=90 Identities=16% Similarity=0.073 Sum_probs=57.4
Q ss_pred ccCCChHHHHHHHHHcC-CEEEEEeCCCcch---hhhhhhhcCCCCCcceeEeee---ccccCcc-CCCHHHHHHHHHHh
Q 039449 114 TVFPDSQPFLRWAREKG-LIVGIISNAEYRY---QDVILPALGVNQGTEWDFGVF---SGLEGVE-KPDPRIYEIALERA 185 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g-~~~~i~s~~~~~~---~~~~l~~~gl~~~~~f~~~~~---~~~~~~~-kp~~~~~~~~~~~~ 185 (253)
.++||+..+.+.|.+.| .+++.+||++-.. ++.++..-++..+..|-.-.. ......+ .-|...+..++.++
T Consensus 196 ~~ipGV~~~yr~l~~~~~apvfYvSnSPw~~f~~L~efi~~~~~P~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~~ 275 (373)
T COG4850 196 QVIPGVSAWYRALTNLGDAPVFYVSNSPWQLFPTLQEFITNRNFPYGPLLLRRWGGVLDNIIESGAARKGQSLRNILRRY 275 (373)
T ss_pred CCCCCHHHHHHHHHhcCCCCeEEecCChhHhHHHHHHHHhcCCCCCCchhHhhcCCcccccccchhhhcccHHHHHHHhC
Confidence 78899999999999987 8999999997654 334444444444333332111 1111111 22345666677776
Q ss_pred CCCCCCceEEEcCCcccchhh
Q 039449 186 GNIAPEEALHIGDSFRKDYVP 206 (253)
Q Consensus 186 ~~~~~~~~~~iGD~~~~Di~~ 206 (253)
. ....+.|||+-+.|.+.
T Consensus 276 p---~~kfvLVGDsGE~DpeI 293 (373)
T COG4850 276 P---DRKFVLVGDSGEHDPEI 293 (373)
T ss_pred C---CceEEEecCCCCcCHHH
Confidence 5 56799999998889864
No 236
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=91.80 E-value=0.28 Score=38.35 Aligned_cols=40 Identities=23% Similarity=0.338 Sum_probs=35.6
Q ss_pred CCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 116 FPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 116 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
.+.+.+.|++|+++|++++++|+.....+...++.+|+..
T Consensus 23 ~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~~ 62 (273)
T PRK00192 23 YEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLED 62 (273)
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCC
Confidence 3567789999999999999999999999999999999875
No 237
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=91.62 E-value=0.18 Score=38.67 Aligned_cols=16 Identities=31% Similarity=0.297 Sum_probs=13.6
Q ss_pred ceEEEEecCCceeccC
Q 039449 7 LRCITVDVTGTLLAYK 22 (253)
Q Consensus 7 ~k~i~fD~DGTL~~~~ 22 (253)
-.+++||+||||.+..
T Consensus 3 ~~~l~lD~DGTL~~~~ 18 (244)
T TIGR00685 3 KRAFFFDYDGTLSEIV 18 (244)
T ss_pred cEEEEEecCccccCCc
Confidence 4689999999999853
No 238
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=91.51 E-value=5.3 Score=30.83 Aligned_cols=124 Identities=12% Similarity=0.161 Sum_probs=74.9
Q ss_pred CCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCcc----------CC-CHHHHHH
Q 039449 112 PYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVE----------KP-DPRIYEI 180 (253)
Q Consensus 112 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~----------kp-~~~~~~~ 180 (253)
.+....+..+..+.+.+.+.+-+++|.+.+.... +.. .....-.+|-.++-..+...+ -| +.+.=..
T Consensus 111 ~~~~v~~~~eA~~~l~~~~~~~iflttGsk~L~~-f~~-~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n~a 188 (249)
T PF02571_consen 111 NWHYVDSYEEAAELLKELGGGRIFLTTGSKNLPP-FVP-APLPGERLFARVLPTPESALGFPPKNIIAMQGPFSKELNRA 188 (249)
T ss_pred eEEEeCCHHHHHHHHhhcCCCCEEEeCchhhHHH-Hhh-cccCCCEEEEEECCCccccCCCChhhEEEEeCCCCHHHHHH
Confidence 3566778899999998887566677777765433 222 111111244444443333211 12 3455556
Q ss_pred HHHHhCCCCCCceEEEcCCc----ccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhh
Q 039449 181 ALERAGNIAPEEALHIGDSF----RKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTS 248 (253)
Q Consensus 181 ~~~~~~~~~~~~~~~iGD~~----~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~ 248 (253)
++++++ ++ +++-=||- ..=+.+|+++|++.+++.|+..+ .+...+.+++|+.+++++
T Consensus 189 l~~~~~-i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~-------~~~~~~~~~~e~l~~l~~ 249 (249)
T PF02571_consen 189 LFRQYG-ID---VLVTKESGGSGFDEKIEAARELGIPVIVIKRPPEP-------YGDPVVETIEELLDWLEQ 249 (249)
T ss_pred HHHHcC-CC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCC-------CCCcccCCHHHHHHHHhC
Confidence 788888 54 34333331 12388999999999999974433 133457999999998864
No 239
>PLN03017 trehalose-phosphatase
Probab=91.28 E-value=0.17 Score=40.98 Aligned_cols=70 Identities=24% Similarity=0.289 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHhCCCCC---CceEEEcCCcccchhhhhhcC----CeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHH
Q 039449 173 PDPRIYEIALERAGNIAP---EEALHIGDSFRKDYVPAKSVG----MHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEF 245 (253)
Q Consensus 173 p~~~~~~~~~~~~~~~~~---~~~~~iGD~~~~Di~~a~~~G----~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~ 245 (253)
.|..+++.+++.++ ... .-++||||.. +|..+.+.+. -.+|.|.. . +. .....+.+++.+|+..+
T Consensus 283 dKG~Av~~LL~~l~-~~~~~~~~pvyiGDD~-TDEDaF~~L~~~~~G~gI~VG~-~-~k----~T~A~y~L~dp~eV~~f 354 (366)
T PLN03017 283 DKGKALEFLLESLG-FGNTNNVFPVYIGDDR-TDEDAFKMLRDRGEGFGILVSK-F-PK----DTDASYSLQDPSEVMDF 354 (366)
T ss_pred CHHHHHHHHHHhcc-cccCCCceEEEeCCCC-ccHHHHHHHhhcCCceEEEECC-C-CC----CCcceEeCCCHHHHHHH
Confidence 56789999999987 653 3589999999 9999988773 23455531 1 11 12345899999999999
Q ss_pred Hhhhh
Q 039449 246 LTSEI 250 (253)
Q Consensus 246 l~~~~ 250 (253)
|..+.
T Consensus 355 L~~L~ 359 (366)
T PLN03017 355 LARLV 359 (366)
T ss_pred HHHHH
Confidence 87654
No 240
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=91.04 E-value=0.36 Score=36.54 Aligned_cols=39 Identities=18% Similarity=0.196 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
+.+.+.|++++++|++++++|+.+...+...++.+|+..
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~ 56 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVEP 56 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCC
Confidence 457899999999999999999999988888899999864
No 241
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=90.74 E-value=0.42 Score=43.77 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=28.1
Q ss_pred ccCCChHHHHHHHHHc-CCEEEEEeCCCcchhhhhhhhc
Q 039449 114 TVFPDSQPFLRWAREK-GLIVGIISNAEYRYQDVILPAL 151 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~-g~~~~i~s~~~~~~~~~~l~~~ 151 (253)
.+.|++.+.|+.|.+. +-.|+|+|+.+...++..+...
T Consensus 622 ~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~ 660 (934)
T PLN03064 622 RLHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEF 660 (934)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCC
Confidence 4456777888888764 5688999999888777766554
No 242
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=90.56 E-value=0.5 Score=37.91 Aligned_cols=86 Identities=15% Similarity=0.096 Sum_probs=57.2
Q ss_pred ccCCChHHHHHHHHHc----CCEEEEEeCCCcch----hhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHh
Q 039449 114 TVFPDSQPFLRWAREK----GLIVGIISNAEYRY----QDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERA 185 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~----g~~~~i~s~~~~~~----~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~ 185 (253)
.+.|++.++++.|+.. |+++.++||+.... ++.+.+.+|+.- ..+.++.+. ......++.+
T Consensus 16 ~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~~~--~~~~i~~s~---------~~~~~ll~~~ 84 (321)
T TIGR01456 16 KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGVDV--SPLQVIQSH---------SPYKSLVNKY 84 (321)
T ss_pred cccHHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCCCC--CHHHHHhhh---------HHHHHHHHHc
Confidence 5578999999999998 99999999997433 333336777753 222222221 2334555544
Q ss_pred CCCCCCceEEEcCCcccchhhhhhcCCeEEE
Q 039449 186 GNIAPEEALHIGDSFRKDYVPAKSVGMHALL 216 (253)
Q Consensus 186 ~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~ 216 (253)
+ ..+++||.+- -...++.+|+..+.
T Consensus 85 ~----~~v~viG~~~--~~~~l~~~G~~~vv 109 (321)
T TIGR01456 85 E----KRILAVGTGS--VRGVAEGYGFQNVV 109 (321)
T ss_pred C----CceEEEeChH--HHHHHHHcCCcccc
Confidence 4 2689998765 47778899988764
No 243
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=90.32 E-value=0.42 Score=35.81 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=35.2
Q ss_pred cCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 115 VFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
+.|...+.|++|+++|++++++|+.+...+...++.+++..
T Consensus 19 i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~ 59 (215)
T TIGR01487 19 ISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSG 59 (215)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCC
Confidence 34566789999999999999999999998888888888774
No 244
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=89.68 E-value=0.61 Score=36.27 Aligned_cols=39 Identities=26% Similarity=0.288 Sum_probs=34.0
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
+...+.|++++++|++++++|+++...+...++.+++..
T Consensus 23 ~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (270)
T PRK10513 23 PAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQ 61 (270)
T ss_pred HHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCC
Confidence 455688999999999999999999999888889888753
No 245
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=89.46 E-value=0.56 Score=35.26 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=32.4
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVN 154 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 154 (253)
..+.|+.++++|++++++||++...+...++.+++.
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 457888899999999999999999999999999886
No 246
>PLN02151 trehalose-phosphatase
Probab=89.44 E-value=1.4 Score=35.73 Aligned_cols=31 Identities=13% Similarity=0.091 Sum_probs=20.5
Q ss_pred ceEEEEecCCceec----cCC-CHHHHHHHHHHHcC
Q 039449 7 LRCITVDVTGTLLA----YKG-ELGDYYCMAAKSVG 37 (253)
Q Consensus 7 ~k~i~fD~DGTL~~----~~~-~~~~~~~~~~~~~g 37 (253)
--++++|+||||.+ ... .....+..+++++.
T Consensus 98 ~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~aL~~La 133 (354)
T PLN02151 98 QIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLA 133 (354)
T ss_pred ceEEEEecCccCCCCCCCcccccCCHHHHHHHHHHh
Confidence 35899999999994 333 34455566666653
No 247
>PLN03017 trehalose-phosphatase
Probab=89.07 E-value=2.1 Score=34.85 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=19.8
Q ss_pred ceEEEEecCCcee---c-cCC-CHHHHHHHHHHHc
Q 039449 7 LRCITVDVTGTLL---A-YKG-ELGDYYCMAAKSV 36 (253)
Q Consensus 7 ~k~i~fD~DGTL~---~-~~~-~~~~~~~~~~~~~ 36 (253)
--+|++|+||||+ + ... .....+..+++++
T Consensus 111 ~~llflD~DGTL~Piv~~p~~a~i~~~~~~aL~~L 145 (366)
T PLN03017 111 QIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKL 145 (366)
T ss_pred CeEEEEecCCcCcCCcCCcccccCCHHHHHHHHHH
Confidence 4588999999999 3 333 3455555555555
No 248
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=89.02 E-value=0.6 Score=42.38 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=15.9
Q ss_pred CCcccCCHHHHHHHHhhhhh
Q 039449 232 GAIVLPDLVAVKEFLTSEIS 251 (253)
Q Consensus 232 ~~~~i~~l~el~~~l~~~~~ 251 (253)
..+.+.+..|+.++|..+.+
T Consensus 766 A~y~l~~~~eV~~lL~~l~~ 785 (797)
T PLN03063 766 ARYVLDSSNDVVSLLHKLAV 785 (797)
T ss_pred CeecCCCHHHHHHHHHHHhc
Confidence 34899999999999887553
No 249
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=88.92 E-value=0.57 Score=35.42 Aligned_cols=39 Identities=13% Similarity=0.141 Sum_probs=34.0
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
|...+.|++++++|++++++|+.+...+...++.+++..
T Consensus 23 ~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 23 LKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSG 61 (230)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCC
Confidence 456688899999999999999999998888888888875
No 250
>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]
Probab=88.90 E-value=0.4 Score=34.96 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=22.4
Q ss_pred eEEEEecCCceeccCCCHHHHHHHHHHHc
Q 039449 8 RCITVDVTGTLLAYKGELGDYYCMAAKSV 36 (253)
Q Consensus 8 k~i~fD~DGTL~~~~~~~~~~~~~~~~~~ 36 (253)
-.+.||+||||..........+...+..+
T Consensus 12 ~l~lfdvdgtLt~~r~~~~~e~~~~l~~l 40 (252)
T KOG3189|consen 12 TLCLFDVDGTLTPPRQKVTPEMLEFLQKL 40 (252)
T ss_pred eEEEEecCCccccccccCCHHHHHHHHHH
Confidence 48899999999998887666666665553
No 251
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=88.74 E-value=0.73 Score=35.74 Aligned_cols=41 Identities=27% Similarity=0.351 Sum_probs=36.8
Q ss_pred cCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 115 VFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
+.+...+.|++++++|++++++|+++...+...++.+++..
T Consensus 21 i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc
Confidence 44567789999999999999999999999999999999985
No 252
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=88.48 E-value=0.76 Score=36.09 Aligned_cols=39 Identities=8% Similarity=0.020 Sum_probs=34.8
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
+.+.+.|++|+++|+++++.|+.....+..+.+.+++..
T Consensus 21 ~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~ 59 (302)
T PRK12702 21 GAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEH 59 (302)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCC
Confidence 456788999999999999999999999999999999875
No 253
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=88.26 E-value=0.74 Score=35.50 Aligned_cols=39 Identities=31% Similarity=0.474 Sum_probs=34.2
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
+...+.|++++++|++++++|+++...+...++.+++..
T Consensus 19 ~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR00099 19 PSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDT 57 (256)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence 456788999999999999999999988888888888774
No 254
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=88.24 E-value=0.61 Score=36.36 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=34.6
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
+...+.|++++++|++++++|+.+...+...++.+++..
T Consensus 22 ~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 60 (272)
T PRK15126 22 EKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLDA 60 (272)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCC
Confidence 456788999999999999999999999998999998875
No 255
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=87.78 E-value=1.5 Score=38.24 Aligned_cols=88 Identities=14% Similarity=0.030 Sum_probs=59.4
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeec-cccCccCCCHHHHHHHHHHhCCCCCC
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFS-GLEGVEKPDPRIYEIALERAGNIAPE 191 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~-~~~~~~kp~~~~~~~~~~~~~~~~~~ 191 (253)
+++.|++.++|+++.+. |.+.|.|-+.+.++..+.+.+.-+ +.||...+++ ++....|.. .+...+- ...+
T Consensus 200 vKlRP~~~efL~~~skl-femhVyTmg~R~YA~~i~~liDP~-~~lF~dRIisrde~~~~kt~-----dL~~~~p-~g~s 271 (635)
T KOG0323|consen 200 VKLRPFVHEFLKEANKL-FEMHVYTMGTRDYALEIAKLIDPE-GKYFGDRIISRDESPFFKTL-----DLVLLFP-CGDS 271 (635)
T ss_pred EEeCccHHHHHHHHHhh-ceeEEEeccchHHHHHHHHHhCCC-CccccceEEEecCCCccccc-----ccccCCC-CCCc
Confidence 47789999999999988 999999999999998888877655 3466554444 443322211 1111222 3445
Q ss_pred ceEEEcCCcccchhhhhh
Q 039449 192 EALHIGDSFRKDYVPAKS 209 (253)
Q Consensus 192 ~~~~iGD~~~~Di~~a~~ 209 (253)
.++.|+|+. .-.....+
T Consensus 272 mvvIIDDr~-dVW~~~~~ 288 (635)
T KOG0323|consen 272 MVVIIDDRS-DVWPDHKR 288 (635)
T ss_pred cEEEEeCcc-ccccCCCc
Confidence 588888888 45555554
No 256
>PRK10976 putative hydrolase; Provisional
Probab=87.71 E-value=0.77 Score=35.63 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=34.2
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
+...+.|++++++|++++++|+.....+...++.+++..
T Consensus 22 ~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 60 (266)
T PRK10976 22 PYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIKS 60 (266)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCC
Confidence 455688999999999999999999998888888888875
No 257
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=87.69 E-value=0.88 Score=35.38 Aligned_cols=40 Identities=28% Similarity=0.305 Sum_probs=34.6
Q ss_pred CCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 116 FPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 116 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
.|...+.|++++++|++++++|+.....+...++.+++..
T Consensus 22 ~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (272)
T PRK10530 22 LPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALDT 61 (272)
T ss_pred CHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCC
Confidence 3456788999999999999999999998888888888764
No 258
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=87.34 E-value=0.89 Score=34.20 Aligned_cols=39 Identities=13% Similarity=0.266 Sum_probs=32.7
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
+...+.|++++++|++++++|+.+...+..+++.+++..
T Consensus 18 ~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~ 56 (225)
T TIGR01482 18 ESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTPD 56 (225)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCC
Confidence 455678888999999999999999988888888888654
No 259
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=86.89 E-value=0.56 Score=42.84 Aligned_cols=31 Identities=19% Similarity=0.207 Sum_probs=20.5
Q ss_pred CceEEEEecCCceeccCC---CHHHHHHHHHHHc
Q 039449 6 RLRCITVDVTGTLLAYKG---ELGDYYCMAAKSV 36 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~---~~~~~~~~~~~~~ 36 (253)
+.++|++|+||||++... .....+..+++++
T Consensus 595 ~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~L~~L 628 (854)
T PLN02205 595 TTRAILLDYDGTLMPQASIDKSPSSKSIDILNTL 628 (854)
T ss_pred cCeEEEEecCCcccCCccccCCCCHHHHHHHHHH
Confidence 468999999999997652 2223444445443
No 260
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=86.77 E-value=0.98 Score=34.87 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
...+.++.++++|++++++|+.....+...++.+|+..
T Consensus 20 ~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR01486 20 PAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLED 57 (256)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCC
Confidence 45788999999999999999999999999999998764
No 261
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=86.47 E-value=0.82 Score=35.68 Aligned_cols=38 Identities=21% Similarity=0.212 Sum_probs=33.6
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVN 154 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 154 (253)
+...+.|++++++|++++++|+.+...+...++.+|++
T Consensus 27 ~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 27 QPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 34568899999999999999999999999999999885
No 262
>COG0731 Fe-S oxidoreductases [Energy production and conversion]
Probab=86.07 E-value=2.8 Score=33.03 Aligned_cols=107 Identities=14% Similarity=0.212 Sum_probs=60.0
Q ss_pred CCccCCChHHHHHHHHHcC-CEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecccc----CccCC-CHHHHHHHHHHh
Q 039449 112 PYTVFPDSQPFLRWAREKG-LIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLE----GVEKP-DPRIYEIALERA 185 (253)
Q Consensus 112 ~~~~~~~~~~~l~~l~~~g-~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~----~~~kp-~~~~~~~~~~~~ 185 (253)
...++|...++++.+++.| ++++++||+.... +++.+...+ ....-+-+... ....| .+..++.+++.+
T Consensus 90 EPTLy~~L~elI~~~k~~g~~~tflvTNgslpd---v~~~L~~~d--ql~~sLdA~~~~~~~~InRP~~~~~~e~ile~L 164 (296)
T COG0731 90 EPTLYPNLGELIEEIKKRGKKTTFLVTNGSLPD---VLEELKLPD--QLYVSLDAPDEKTFRRINRPHKKDSWEKILEGL 164 (296)
T ss_pred CcccccCHHHHHHHHHhcCCceEEEEeCCChHH---HHHHhccCC--EEEEEeccCCHHHHHHhcCCCCcchHHHHHHHH
Confidence 3478999999999999999 7999999999844 444443332 11111111111 11245 335666666655
Q ss_pred CCCCCC-------ceEEEcCCcccch--------hhhhhcCCeEEEEcCCCCCCh
Q 039449 186 GNIAPE-------EALHIGDSFRKDY--------VPAKSVGMHALLVDRFKTPDA 225 (253)
Q Consensus 186 ~~~~~~-------~~~~iGD~~~~Di--------~~a~~~G~~~i~~~~~~~~~~ 225 (253)
...+.. ++..|. +. ||- +..+.+....|.++.+..+..
T Consensus 165 ~~~~~~~~~~~vir~tlvk-g~-N~~~e~~~~~a~ll~~~~Pd~velk~~~rpga 217 (296)
T COG0731 165 EIFRSEYKGRTVIRTTLVK-GI-NDDEEELEEYAELLERINPDFVELKTYMRPGA 217 (296)
T ss_pred HHhhhcCCCcEEEEEEEec-cc-cCChHHHHHHHHHHHhcCCCeEEEecCccCCh
Confidence 411111 344444 33 232 245566778888885544433
No 263
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=84.64 E-value=7.9 Score=36.34 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=47.0
Q ss_pred hhhhhhhhcCCCCCcceeEeeecc------ccCccCCCHHHHHHHHHHhCCCCCCce-EEEcCCccc-chhhhhhcCCeE
Q 039449 143 YQDVILPALGVNQGTEWDFGVFSG------LEGVEKPDPRIYEIALERAGNIAPEEA-LHIGDSFRK-DYVPAKSVGMHA 214 (253)
Q Consensus 143 ~~~~~l~~~gl~~~~~f~~~~~~~------~~~~~kp~~~~~~~~~~~~~~~~~~~~-~~iGD~~~~-Di~~a~~~G~~~ 214 (253)
.++..|+..|+.. .. +++. .......+.+++..+..++| ++.+++ +|+||+- | |++....--.++
T Consensus 925 elr~~Lr~~gLr~----~~-iys~~~~~LDVlP~~ASKgqAlRyL~~rwg-i~l~~v~VfaGdSG-ntD~e~Ll~G~~~t 997 (1050)
T TIGR02468 925 ELRKLLRIQGLRC----HA-VYCRNGTRLNVIPLLASRSQALRYLFVRWG-IELANMAVFVGESG-DTDYEGLLGGLHKT 997 (1050)
T ss_pred HHHHHHHhCCCce----EE-EeecCCcEeeeeeCCCCHHHHHHHHHHHcC-CChHHeEEEeccCC-CCCHHHHhCCceeE
Confidence 3555666666654 22 2222 22344668899999999999 999999 5599999 7 988764444455
Q ss_pred EEEcC
Q 039449 215 LLVDR 219 (253)
Q Consensus 215 i~~~~ 219 (253)
|.+.+
T Consensus 998 vi~~g 1002 (1050)
T TIGR02468 998 VILKG 1002 (1050)
T ss_pred EEEec
Confidence 65553
No 264
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=84.52 E-value=0.83 Score=34.79 Aligned_cols=39 Identities=23% Similarity=0.174 Sum_probs=27.7
Q ss_pred CCHHHHHHHHHHhCCCC---CCceEEEcCCcccchhhhhhcCCe
Q 039449 173 PDPRIYEIALERAGNIA---PEEALHIGDSFRKDYVPAKSVGMH 213 (253)
Q Consensus 173 p~~~~~~~~~~~~~~~~---~~~~~~iGD~~~~Di~~a~~~G~~ 213 (253)
.|..+++.+++.++ .. +.-++++||.. +|-.+.+.+.-.
T Consensus 165 ~KG~av~~ll~~~~-~~~~~~~~~l~~GDD~-tDE~~f~~~~~~ 206 (235)
T PF02358_consen 165 NKGSAVRRLLEELP-FAGPKPDFVLYIGDDR-TDEDAFRALREL 206 (235)
T ss_dssp -HHHHHHHHHTTS----------EEEEESSH-HHHHHHHTTTTS
T ss_pred ChHHHHHHHHHhcC-ccccccceeEEecCCC-CCHHHHHHHHhc
Confidence 36788889998887 54 67899999999 899998887553
No 265
>KOG0203 consensus Na+/K+ ATPase, alpha subunit [Inorganic ion transport and metabolism]
Probab=83.20 E-value=2.1 Score=38.44 Aligned_cols=102 Identities=15% Similarity=0.143 Sum_probs=64.1
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC--CcceeE----------eeecc------ccCcc--CC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ--GTEWDF----------GVFSG------LEGVE--KP 173 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~--~~~f~~----------~~~~~------~~~~~--kp 173 (253)
+|.+.+.+.+..+++.|++++.+|+.-...++.+.+..|+-. ..-+.. .+.+. ..|.. .-
T Consensus 590 PPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vgIi~~~~et~e~~a~r~~~~v~~vn~~~a~a~VihG~eL~~~ 669 (1019)
T KOG0203|consen 590 PPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVGIISEGSETVEDIAKRLNIPVEQVNSRDAKAAVIHGSELPDM 669 (1019)
T ss_pred CCcccCchhhhhhhhhCceEEEEecCccchhhhhhhheeeecCCchhhhhhHHhcCCcccccCccccceEEEeccccccc
Confidence 356678899999999999999999998877777776666322 000000 00000 01111 22
Q ss_pred CHHHHHHHHHHhCC-----CCC--------------CceEEEcCCcccchhhhhhcCCeEEE
Q 039449 174 DPRIYEIALERAGN-----IAP--------------EEALHIGDSFRKDYVPAKSVGMHALL 216 (253)
Q Consensus 174 ~~~~~~~~~~~~~~-----~~~--------------~~~~~iGD~~~~Di~~a~~~G~~~i~ 216 (253)
.++-+.+++..... -+| +=+.+.||+. ||-.+.+++.++.++
T Consensus 670 ~~~qld~il~nh~eIVFARTSPqQKLiIVe~cQr~GaiVaVTGDGV-NDsPALKKADIGVAM 730 (1019)
T KOG0203|consen 670 SSEQLDELLQNHQEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGV-NDSPALKKADIGVAM 730 (1019)
T ss_pred CHHHHHHHHHhCCceEEEecCccceEEeEhhhhhcCcEEEEeCCCc-CCChhhcccccceee
Confidence 34555555555420 111 3466789999 999999999999887
No 266
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=82.89 E-value=0.94 Score=31.73 Aligned_cols=17 Identities=18% Similarity=0.290 Sum_probs=14.3
Q ss_pred ceEEEEecCCceeccCC
Q 039449 7 LRCITVDVTGTLLAYKG 23 (253)
Q Consensus 7 ~k~i~fD~DGTL~~~~~ 23 (253)
-+.+++|+||||+++..
T Consensus 2 k~~lvldld~tl~~~~~ 18 (148)
T smart00577 2 KKTLVLDLDETLVHSTH 18 (148)
T ss_pred CcEEEEeCCCCeECCCC
Confidence 36899999999999753
No 267
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=82.16 E-value=0.88 Score=32.47 Aligned_cols=16 Identities=19% Similarity=0.272 Sum_probs=14.0
Q ss_pred eEEEEecCCceeccCC
Q 039449 8 RCITVDVTGTLLAYKG 23 (253)
Q Consensus 8 k~i~fD~DGTL~~~~~ 23 (253)
+++++|+|+||+.+..
T Consensus 2 ~~lvlDLDeTLi~~~~ 17 (162)
T TIGR02251 2 KTLVLDLDETLVHSTF 17 (162)
T ss_pred cEEEEcCCCCcCCCCC
Confidence 5799999999999754
No 268
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=79.49 E-value=27 Score=27.12 Aligned_cols=63 Identities=17% Similarity=0.328 Sum_probs=43.6
Q ss_pred HHHHHHHHHhCCCCCCceEEEcCC------cccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhh
Q 039449 176 RIYEIALERAGNIAPEEALHIGDS------FRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~iGD~------~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~ 249 (253)
+.=..++++++ ++ +++-=|| . .=+.+|++.|++.+++.|+..+ .+..++.+++|+.+++++.
T Consensus 187 e~n~al~~~~~-i~---~lVtK~SG~~Gg~~-eKi~AA~~lgi~vivI~RP~~~-------~~~~~~~~~~el~~~l~~~ 254 (256)
T TIGR00715 187 ELEKALLREYR-ID---AVVTKASGEQGGEL-EKVKAAEALGINVIRIARPQTI-------PGVAIFDDISQLNQFVARL 254 (256)
T ss_pred HHHHHHHHHcC-CC---EEEEcCCCCccchH-HHHHHHHHcCCcEEEEeCCCCC-------CCCccCCCHHHHHHHHHHh
Confidence 44456777777 64 4444333 4 4588999999999999974321 1235789999999999875
Q ss_pred h
Q 039449 250 I 250 (253)
Q Consensus 250 ~ 250 (253)
+
T Consensus 255 ~ 255 (256)
T TIGR00715 255 L 255 (256)
T ss_pred c
Confidence 4
No 269
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=79.42 E-value=1.5 Score=31.13 Aligned_cols=18 Identities=17% Similarity=0.239 Sum_probs=15.5
Q ss_pred CceEEEEecCCceeccCC
Q 039449 6 RLRCITVDVTGTLLAYKG 23 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~ 23 (253)
+...+++|+|.||+++..
T Consensus 5 ~kl~LVLDLDeTLihs~~ 22 (156)
T TIGR02250 5 KKLHLVLDLDQTLIHTTK 22 (156)
T ss_pred CceEEEEeCCCCcccccc
Confidence 457899999999999765
No 270
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=78.85 E-value=8.8 Score=24.90 Aligned_cols=33 Identities=21% Similarity=0.042 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhh
Q 039449 173 PDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAK 208 (253)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~ 208 (253)
.|...+.++++.+. ..+.+.||||-..|.+.-.
T Consensus 50 ~K~~~i~~i~~~fP---~~kfiLIGDsgq~DpeiY~ 82 (100)
T PF09949_consen 50 HKRDNIERILRDFP---ERKFILIGDSGQHDPEIYA 82 (100)
T ss_pred HHHHHHHHHHHHCC---CCcEEEEeeCCCcCHHHHH
Confidence 45566777776654 5689999999988876533
No 271
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=77.01 E-value=23 Score=32.59 Aligned_cols=82 Identities=18% Similarity=0.245 Sum_probs=49.6
Q ss_pred cCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceE
Q 039449 115 VFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEAL 194 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 194 (253)
..+++.+.+......|..+++++-+.. +.--+++. ..-||+...--..++++| + +-++
T Consensus 687 ~~~~i~~~~~~~e~~g~tvv~v~vn~~-----l~gv~~l~--------------D~vr~~a~~av~~Lk~~G-i--~v~m 744 (951)
T KOG0207|consen 687 IPDDILDALTESERKGQTVVYVAVNGQ-----LVGVFALE--------------DQVRPDAALAVAELKSMG-I--KVVM 744 (951)
T ss_pred CchhHHHhhhhHhhcCceEEEEEECCE-----EEEEEEec--------------cccchhHHHHHHHHHhcC-c--eEEE
Confidence 334566666666667766666554443 11111111 123455555555677777 4 4678
Q ss_pred EEcCCcccchhhhhhcCCeEEEEc
Q 039449 195 HIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 195 ~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
.=||+...--..|+++|+..|+..
T Consensus 745 LTGDn~~aA~svA~~VGi~~V~ae 768 (951)
T KOG0207|consen 745 LTGDNDAAARSVAQQVGIDNVYAE 768 (951)
T ss_pred EcCCCHHHHHHHHHhhCcceEEec
Confidence 889988767778899998888776
No 272
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=76.44 E-value=15 Score=29.86 Aligned_cols=90 Identities=16% Similarity=0.200 Sum_probs=53.5
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHH------HHHHHhCCCCCCc
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYE------IALERAGNIAPEE 192 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~------~~~~~~~~~~~~~ 192 (253)
.+.++++|.++|+.+ ++|..+...+..+++..|++- ...+..+.+ +...... ++++.....+| +
T Consensus 16 Fk~~I~eL~~~GheV-~it~R~~~~~~~LL~~yg~~y-------~~iG~~g~~-~~~Kl~~~~~R~~~l~~~~~~~~p-D 85 (335)
T PF04007_consen 16 FKNIIRELEKRGHEV-LITARDKDETEELLDLYGIDY-------IVIGKHGDS-LYGKLLESIERQYKLLKLIKKFKP-D 85 (335)
T ss_pred HHHHHHHHHhCCCEE-EEEEeccchHHHHHHHcCCCe-------EEEcCCCCC-HHHHHHHHHHHHHHHHHHHHhhCC-C
Confidence 467889999999997 566667777888999998874 222222221 1111111 11111111234 3
Q ss_pred eEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 193 ALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 193 ~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
+++-..|+ .-...|.-.|+++|.+..
T Consensus 86 v~is~~s~-~a~~va~~lgiP~I~f~D 111 (335)
T PF04007_consen 86 VAISFGSP-EAARVAFGLGIPSIVFND 111 (335)
T ss_pred EEEecCcH-HHHHHHHHhCCCeEEEec
Confidence 44445556 345588999999998885
No 273
>COG1834 N-Dimethylarginine dimethylaminohydrolase [Amino acid transport and metabolism]
Probab=75.28 E-value=20 Score=27.92 Aligned_cols=88 Identities=16% Similarity=0.143 Sum_probs=50.1
Q ss_pred HHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCC----------
Q 039449 120 QPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIA---------- 189 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~---------- 189 (253)
.++.+.+.+.|+.|..+.-...-.-..+.+-.++-- ---.++..-....++.....++..++++| ++
T Consensus 41 ~~lve~l~~~gv~V~ll~~~~~~Pd~VFt~D~~~v~--~~~avl~r~~~p~R~gE~~~~~~~~~~lg-i~i~~~~~~~~~ 117 (267)
T COG1834 41 EALVEALEKNGVEVHLLPPIEGLPDQVFTRDPGLVT--GEGAVLARMGAPERRGEEEAIKETLESLG-IPIYPRVEAGVF 117 (267)
T ss_pred HHHHHHHHHCCCEEEEcCcccCCCcceEeccceeEe--cccEEEeccCChhhccCHHHHHHHHHHcC-CcccccccCCCc
Confidence 356667788888888887333211111111111111 00011111112234566788888899988 53
Q ss_pred ---------CCceEEEcCCcccchhhhhhc
Q 039449 190 ---------PEEALHIGDSFRKDYVPAKSV 210 (253)
Q Consensus 190 ---------~~~~~~iGD~~~~Di~~a~~~ 210 (253)
..++++||.+.++|.+++.+.
T Consensus 118 eG~GD~l~~~~~~v~iG~s~RTn~egi~~l 147 (267)
T COG1834 118 EGAGDVLMDGGDTVYIGYSFRTNLEGIEQL 147 (267)
T ss_pred cccccEEEeCCcEEEEEeccccchHHHHHH
Confidence 157888999999999887765
No 274
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=75.25 E-value=22 Score=23.87 Aligned_cols=92 Identities=18% Similarity=0.087 Sum_probs=47.0
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhc-CCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEc
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYRYQDVILPAL-GVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIG 197 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~-gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iG 197 (253)
..-+-..++..|+++..+....+ .+...+.. .... +.+..|.......+....+...+++.+ .+ .-.+++|
T Consensus 16 ~~~~~~~l~~~G~~vi~lG~~vp--~e~~~~~a~~~~~----d~V~iS~~~~~~~~~~~~~~~~L~~~~-~~-~i~i~~G 87 (122)
T cd02071 16 AKVIARALRDAGFEVIYTGLRQT--PEEIVEAAIQEDV----DVIGLSSLSGGHMTLFPEVIELLRELG-AG-DILVVGG 87 (122)
T ss_pred HHHHHHHHHHCCCEEEECCCCCC--HHHHHHHHHHcCC----CEEEEcccchhhHHHHHHHHHHHHhcC-CC-CCEEEEE
Confidence 34445567888998755543322 22222222 1222 444555555444443333334444444 33 3345566
Q ss_pred -CCcccchhhhhhcCCeEEEEc
Q 039449 198 -DSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 198 -D~~~~Di~~a~~~G~~~i~~~ 218 (253)
..+..++..++++|+..++-.
T Consensus 88 G~~~~~~~~~~~~~G~d~~~~~ 109 (122)
T cd02071 88 GIIPPEDYELLKEMGVAEIFGP 109 (122)
T ss_pred CCCCHHHHHHHHHCCCCEEECC
Confidence 344234677789998877644
No 275
>KOG1618 consensus Predicted phosphatase [General function prediction only]
Probab=73.31 E-value=5.6 Score=31.61 Aligned_cols=48 Identities=25% Similarity=0.320 Sum_probs=34.8
Q ss_pred cCCCHHHHHHHHHHh-------C-CCCCCceEEEcCCcccchhhhh---------------hcCCeEEEEc
Q 039449 171 EKPDPRIYEIALERA-------G-NIAPEEALHIGDSFRKDYVPAK---------------SVGMHALLVD 218 (253)
Q Consensus 171 ~kp~~~~~~~~~~~~-------~-~~~~~~~~~iGD~~~~Di~~a~---------------~~G~~~i~~~ 218 (253)
+||.+-.|..+-..+ + .-+...+.+|||++.+|+..|+ .-|+.+|+|.
T Consensus 270 GKPt~ltY~~A~~vl~~~ak~~~~~~~~k~lymvGDNP~sDv~GA~lf~~yap~~~~g~~~~~~w~SILV~ 340 (389)
T KOG1618|consen 270 GKPTKLTYDYAEDVLRRQAKRRGGAAPIKKLYMVGDNPMSDVRGANLFHQYAPELGAGGSANYGWISILVR 340 (389)
T ss_pred CCCceehHHhHHHHHHHHHHhhcccCCcceeeeecCCCcccccccccccccccccccccccCCCceEEEEe
Confidence 478766555443222 2 2356789999999999999997 6688888887
No 276
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=72.05 E-value=58 Score=27.29 Aligned_cols=71 Identities=10% Similarity=0.030 Sum_probs=44.1
Q ss_pred HHcCCCCChHHHHHHHHHHHHHhCC---------CCCCccCCChHHHHHHHHHcCCEEEEE-eCCCc---chhhhhhhhc
Q 039449 85 VRAGYDYDEDTFEKIFRRIYASFGS---------SAPYTVFPDSQPFLRWAREKGLIVGII-SNAEY---RYQDVILPAL 151 (253)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~l~~~g~~~~i~-s~~~~---~~~~~~l~~~ 151 (253)
+..+...+.+++.+...+....+.. ..+...+|.+.++++.+++.|+++++. ||+.. ......+..+
T Consensus 48 e~~g~~~t~~evl~ev~~d~~~~~~~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~ 127 (404)
T TIGR03278 48 EINGDFIPPQVVLGEVQTSLGFRTGRDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDN 127 (404)
T ss_pred hhcCCcCCHHHHHHHHHHHHHHhcCCCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHc
Confidence 3344555666666666555443311 123356788999999999999999885 98653 2233445555
Q ss_pred CCCC
Q 039449 152 GVNQ 155 (253)
Q Consensus 152 gl~~ 155 (253)
|++.
T Consensus 128 gld~ 131 (404)
T TIGR03278 128 GVRE 131 (404)
T ss_pred CCCE
Confidence 6654
No 277
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=71.74 E-value=44 Score=25.73 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=28.2
Q ss_pred CceEEEcCCcccch---hhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHH
Q 039449 191 EEALHIGDSFRKDY---VPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVA 241 (253)
Q Consensus 191 ~~~~~iGD~~~~Di---~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~e 241 (253)
.++++|=|-. .|- ..|+++|+++|.+..+...+ ..-+++||--++
T Consensus 157 Pd~l~ViDp~-~e~iAv~EA~klgIPVvAlvDTn~dp-----d~VD~~IP~Ndd 204 (252)
T COG0052 157 PDVLFVIDPR-KEKIAVKEANKLGIPVVALVDTNCDP-----DGVDYVIPGNDD 204 (252)
T ss_pred CCEEEEeCCc-HhHHHHHHHHHcCCCEEEEecCCCCC-----ccCceeecCCCh
Confidence 4688888877 564 46778899998777433321 123456664443
No 278
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=71.71 E-value=44 Score=26.94 Aligned_cols=96 Identities=17% Similarity=0.181 Sum_probs=63.3
Q ss_pred CccCCChHHHHHHHHHc---CCEEEEEeCCCcchhhhhhhhcCCCCCccee-EeeeccccCccCCCHHHHHHHHHHhCCC
Q 039449 113 YTVFPDSQPFLRWAREK---GLIVGIISNAEYRYQDVILPALGVNQGTEWD-FGVFSGLEGVEKPDPRIYEIALERAGNI 188 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~---g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~ 188 (253)
-.++|+..++++..+.. |+.+.++++.+....+. +..+|-.. ..- .-.+....+ -.+|+.++.+.+... +
T Consensus 177 ~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~-l~~~g~~a--vmPl~~pIGsg~g--v~~p~~i~~~~e~~~-v 250 (326)
T PRK11840 177 KTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKR-LEDAGAVA--VMPLGAPIGSGLG--IQNPYTIRLIVEGAT-V 250 (326)
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH-HHhcCCEE--EeeccccccCCCC--CCCHHHHHHHHHcCC-C
Confidence 35678888998888776 99997788777766654 33333321 000 011222222 337889988888765 4
Q ss_pred CCCceEEEcC---CcccchhhhhhcCCeEEEEcC
Q 039449 189 APEEALHIGD---SFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 189 ~~~~~~~iGD---~~~~Di~~a~~~G~~~i~~~~ 219 (253)
+ +++|- ++ .|+..|-+.|...++++.
T Consensus 251 p----VivdAGIg~~-sda~~AmelGadgVL~nS 279 (326)
T PRK11840 251 P----VLVDAGVGTA-SDAAVAMELGCDGVLMNT 279 (326)
T ss_pred c----EEEeCCCCCH-HHHHHHHHcCCCEEEEcc
Confidence 3 55554 34 799999999999999994
No 279
>PRK13762 tRNA-modifying enzyme; Provisional
Probab=71.18 E-value=13 Score=29.99 Aligned_cols=29 Identities=14% Similarity=0.303 Sum_probs=25.7
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcc
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYR 142 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~ 142 (253)
.++|.+.++++.+++.|+.+.+.||+...
T Consensus 142 lL~p~l~eli~~~k~~Gi~~~L~TNG~~~ 170 (322)
T PRK13762 142 TLYPYLPELIEEFHKRGFTTFLVTNGTRP 170 (322)
T ss_pred cchhhHHHHHHHHHHcCCCEEEECCCCCH
Confidence 46788999999999999999999999753
No 280
>PLN02887 hydrolase family protein
Probab=70.34 E-value=4.6 Score=35.32 Aligned_cols=41 Identities=17% Similarity=0.093 Sum_probs=35.3
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVN 154 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 154 (253)
.+-+...+.|++++++|+++++.|+.....+...++.+++.
T Consensus 325 ~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 325 QISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred ccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 34556778999999999999999999999888888888875
No 281
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=70.17 E-value=19 Score=29.39 Aligned_cols=97 Identities=15% Similarity=0.160 Sum_probs=54.6
Q ss_pred hHHHHHHHHHc-CCE-EEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEE
Q 039449 119 SQPFLRWAREK-GLI-VGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHI 196 (253)
Q Consensus 119 ~~~~l~~l~~~-g~~-~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~i 196 (253)
..+++++|++. ++. .+++|+........+++.+++.. .+...+..+.....+--..++..+.+.+...+|+=++..
T Consensus 16 ~~p~~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~ 93 (365)
T TIGR00236 16 MAPLIRALKKYPEIDSYVIVTAQHREMLDQVLDLFHLPP--DYDLNIMSPGQTLGEITSNMLEGLEELLLEEKPDIVLVQ 93 (365)
T ss_pred HHHHHHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCCCC--CeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCCCEEEEe
Confidence 45778888875 443 35777776666777777788865 222222111111111112222333332222446778888
Q ss_pred cCCcccc---hhhhhhcCCeEEEEc
Q 039449 197 GDSFRKD---YVPAKSVGMHALLVD 218 (253)
Q Consensus 197 GD~~~~D---i~~a~~~G~~~i~~~ 218 (253)
||.. .- ..+|...|++.+++.
T Consensus 94 gd~~-~~la~a~aa~~~~ipv~h~~ 117 (365)
T TIGR00236 94 GDTT-TTLAGALAAFYLQIPVGHVE 117 (365)
T ss_pred CCch-HHHHHHHHHHHhCCCEEEEe
Confidence 8876 43 346677899999886
No 282
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=69.92 E-value=49 Score=25.59 Aligned_cols=100 Identities=13% Similarity=0.072 Sum_probs=55.4
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCc---------------cCCC-HH
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGV---------------EKPD-PR 176 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~---------------~kp~-~~ 176 (253)
+.-.+++.+..+.+++.|-++ ++|-+.... ..+........ ++..++-..+... .-|- .+
T Consensus 111 ~~~V~d~~ea~~~~~~~~~rV-flt~G~~~l-~~f~~~~~~~~--~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~ 186 (257)
T COG2099 111 WIEVADIEEAAEAAKQLGRRV-FLTTGRQNL-AHFVAADAHSH--VLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEE 186 (257)
T ss_pred eEEecCHHHHHHHHhccCCcE-EEecCccch-HHHhcCcccce--EEEEEcCchHHHHHHHhcCCChhhEEEecCCcChH
Confidence 344567888888888887555 455544432 11222222222 4444433332211 1122 23
Q ss_pred HHHHHHHHhCCCCCCceEEEcCCcc-----cchhhhhhcCCeEEEEcCC
Q 039449 177 IYEIALERAGNIAPEEALHIGDSFR-----KDYVPAKSVGMHALLVDRF 220 (253)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~iGD~~~-----~Di~~a~~~G~~~i~~~~~ 220 (253)
.=..++++++ ++ +++-=||-. -=+.+|.++|+++|++.++
T Consensus 187 ~n~all~q~~-id---~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I~Rp 231 (257)
T COG2099 187 DNKALLEQYR-ID---VVVTKNSGGAGGTYEKIEAARELGIPVIMIERP 231 (257)
T ss_pred HHHHHHHHhC-CC---EEEEccCCcccCcHHHHHHHHHcCCcEEEEecC
Confidence 3345677777 64 444444441 3489999999999999974
No 283
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=69.72 E-value=25 Score=26.49 Aligned_cols=96 Identities=18% Similarity=0.182 Sum_probs=63.0
Q ss_pred ccCCChH-HHHHHHHHcCCEEEEEeCCCcc-----hhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCC
Q 039449 114 TVFPDSQ-PFLRWAREKGLIVGIISNAEYR-----YQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGN 187 (253)
Q Consensus 114 ~~~~~~~-~~l~~l~~~g~~~~i~s~~~~~-----~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~ 187 (253)
.++|++. ++.+.+++.|.+.+|+...... .++..++.+|+.- .|...+ ++.....+ ..+...++.+|
T Consensus 59 ~lHPDl~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~--~~P~~~-CsL~~~~~---p~i~~F~~~fG- 131 (217)
T PF02593_consen 59 GLHPDLTYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEV--EFPKPF-CSLEENGN---PQIDEFAEYFG- 131 (217)
T ss_pred ccCchhHHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCcee--ecCccc-cccCCCCC---hhHHHHHHHhC-
Confidence 4567766 7777788899999999988887 7888888888875 444432 22222233 46667777899
Q ss_pred CCCCceEEEcCCcccchhhhhhcCCeEEEE
Q 039449 188 IAPEEALHIGDSFRKDYVPAKSVGMHALLV 217 (253)
Q Consensus 188 ~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~ 217 (253)
- |+==+.+.|+.-.|+...+.+-+++-|.
T Consensus 132 k-P~~ei~v~~~~I~~V~VlR~aPCGsT~~ 160 (217)
T PF02593_consen 132 K-PKVEIEVENGKIKDVKVLRSAPCGSTWF 160 (217)
T ss_pred C-ceEEEEecCCcEEEEEEEecCCCccHHH
Confidence 4 4433334443337888877776665443
No 284
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=68.84 E-value=44 Score=24.66 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=21.6
Q ss_pred CceEEEcCCcccch------hhhhhcCCeEEEEcCCCCC
Q 039449 191 EEALHIGDSFRKDY------VPAKSVGMHALLVDRFKTP 223 (253)
Q Consensus 191 ~~~~~iGD~~~~Di------~~a~~~G~~~i~~~~~~~~ 223 (253)
-+.++.||.. .|. ..+.++|+..+.-.| +.+
T Consensus 89 ~~~vv~G~i~-sd~~~~~~e~~~~~~gl~~~~PLW-~~~ 125 (194)
T cd01994 89 VDAVVFGAIL-SEYQRTRVERVCERLGLEPLAPLW-GRD 125 (194)
T ss_pred CCEEEECccc-cHHHHHHHHHHHHHcCCEEEeccc-CCC
Confidence 4688889887 564 456778888887774 444
No 285
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=68.81 E-value=4.3 Score=31.19 Aligned_cols=39 Identities=5% Similarity=-0.099 Sum_probs=30.0
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
|.+.+++++++++|+.++++|+.....++.+++.+++..
T Consensus 24 ~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~ 62 (249)
T TIGR01485 24 LRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLT 62 (249)
T ss_pred HHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCC
Confidence 344577777888888889999998888888877777654
No 286
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=68.33 E-value=53 Score=25.31 Aligned_cols=96 Identities=22% Similarity=0.219 Sum_probs=62.4
Q ss_pred CCccCCChHHHHHHHHHc---CCEEEEEeCCCcchhhhhhhhcCCCCCccee--EeeeccccCccCCCHHHHHHHHHHhC
Q 039449 112 PYTVFPDSQPFLRWAREK---GLIVGIISNAEYRYQDVILPALGVNQGTEWD--FGVFSGLEGVEKPDPRIYEIALERAG 186 (253)
Q Consensus 112 ~~~~~~~~~~~l~~l~~~---g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~--~~~~~~~~~~~kp~~~~~~~~~~~~~ 186 (253)
+-.++|+..++++..+.. |+.+.-+++.+....+. +..+|-.- ..- ..+.++ .+-.+++.++.+.+..+
T Consensus 102 ~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~-l~~~G~~~--vmPlg~pIGsg---~Gi~~~~~I~~I~e~~~ 175 (248)
T cd04728 102 DKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKR-LEDAGCAA--VMPLGSPIGSG---QGLLNPYNLRIIIERAD 175 (248)
T ss_pred ccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH-HHHcCCCE--eCCCCcCCCCC---CCCCCHHHHHHHHHhCC
Confidence 346789999998888776 99998677777766664 44445443 100 111111 22335788887776654
Q ss_pred CCCCCceEEEcC---CcccchhhhhhcCCeEEEEcC
Q 039449 187 NIAPEEALHIGD---SFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 187 ~~~~~~~~~iGD---~~~~Di~~a~~~G~~~i~~~~ 219 (253)
++ +++|- ++ .|+..+.+.|...+++++
T Consensus 176 -vp----VI~egGI~tp-eda~~AmelGAdgVlV~S 205 (248)
T cd04728 176 -VP----VIVDAGIGTP-SDAAQAMELGADAVLLNT 205 (248)
T ss_pred -Cc----EEEeCCCCCH-HHHHHHHHcCCCEEEECh
Confidence 32 55543 46 799999999999999984
No 287
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=68.28 E-value=27 Score=26.24 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=37.0
Q ss_pred HHHcCCCCChHHHHHHHHHHHHHhC--------CCCCCccCCC-hHHHHHHHHHcCCEEEEEeCCCcc
Q 039449 84 FVRAGYDYDEDTFEKIFRRIYASFG--------SSAPYTVFPD-SQPFLRWAREKGLIVGIISNAEYR 142 (253)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~-~~~~l~~l~~~g~~~~i~s~~~~~ 142 (253)
++..+...+.+++.....+....+. +.....+.++ +.++++.+++.|+.+++-||+...
T Consensus 12 ~~~~g~~~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~ 79 (213)
T PRK10076 12 FERIGRDITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAP 79 (213)
T ss_pred HHhcCcccCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 4445555666666655544322221 1112234455 579999999999999999999664
No 288
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=68.14 E-value=47 Score=31.09 Aligned_cols=28 Identities=0% Similarity=0.023 Sum_probs=24.8
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCc
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEY 141 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~ 141 (253)
++.+....++++|.+.+++.+.+|+.+-
T Consensus 705 kLK~~T~~VI~eL~~AnIRtVMcTGDNl 732 (1140)
T KOG0208|consen 705 KLKEETKRVIDELNRANIRTVMCTGDNL 732 (1140)
T ss_pred ccccccHHHHHHHHhhcceEEEEcCCch
Confidence 5678889999999999999999999854
No 289
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=66.90 E-value=7.6 Score=29.18 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVN 154 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 154 (253)
-+.+.+.+|++.|++|+++|......+...-+.+|+.
T Consensus 27 pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~ 63 (274)
T COG3769 27 PAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQ 63 (274)
T ss_pred ccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCC
Confidence 3568899999999999999999887777677777766
No 290
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=66.71 E-value=56 Score=25.00 Aligned_cols=65 Identities=11% Similarity=0.242 Sum_probs=45.0
Q ss_pred CCChHHHHHHHHHHHHHhCCC-----CCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC
Q 039449 90 DYDEDTFEKIFRRIYASFGSS-----APYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVN 154 (253)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 154 (253)
.+.+++..+........+... ++....||=...-..|++.|++++++|..+.......++..|+.
T Consensus 42 Km~pe~~~~~~~~~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~G 111 (277)
T PRK00994 42 KMGPEEVEEVVKKMLEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLG 111 (277)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCc
Confidence 355666665555555444321 23344577666667788899999999999998877788888775
No 291
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=66.24 E-value=6.5 Score=33.22 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=14.5
Q ss_pred ccCceEEEEecCCceeccCC
Q 039449 4 LSRLRCITVDVTGTLLAYKG 23 (253)
Q Consensus 4 ~~~~k~i~fD~DGTL~~~~~ 23 (253)
+.++++|-||+|-||.....
T Consensus 9 l~~i~~iGFDmDyTLa~Y~~ 28 (448)
T PF05761_consen 9 LKDIDVIGFDMDYTLARYKS 28 (448)
T ss_dssp CCC--EEEE-TBTTTBEE-C
T ss_pred cccCCEEEECcccchhhcCH
Confidence 56799999999999999877
No 292
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=65.41 E-value=2.6 Score=24.46 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=15.1
Q ss_pred HHHHHHHhCCCCCCceEEEcCCcccchhhhh
Q 039449 178 YEIALERAGNIAPEEALHIGDSFRKDYVPAK 208 (253)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~ 208 (253)
+.++++++| -++++||.. .|+++..
T Consensus 7 VqQLLK~fG-----~~IY~gdr~-~DielM~ 31 (62)
T PF06014_consen 7 VQQLLKKFG-----IIIYVGDRL-WDIELME 31 (62)
T ss_dssp HHHHHHTTS----------S-HH-HHHHHHH
T ss_pred HHHHHHHCC-----EEEEeCChH-HHHHHHH
Confidence 457888898 579999999 8998753
No 293
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=65.23 E-value=8.7 Score=34.20 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
+...+.|+.++++|++++++|+.....+....+.+++..
T Consensus 436 ~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~~ 474 (694)
T PRK14502 436 STALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIKD 474 (694)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence 456788999999999999999999998888888888753
No 294
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=64.23 E-value=20 Score=29.21 Aligned_cols=88 Identities=17% Similarity=0.232 Sum_probs=46.4
Q ss_pred HHHHc-CCEEE-EEeCCC--cchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHH---HHHHHHHhCCCCCCceEEEc
Q 039449 125 WAREK-GLIVG-IISNAE--YRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRI---YEIALERAGNIAPEEALHIG 197 (253)
Q Consensus 125 ~l~~~-g~~~~-i~s~~~--~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~---~~~~~~~~~~~~~~~~~~iG 197 (253)
+|++. ++++. ++|+.- ......+.+.+++ . ..+..+..+.....+.-..+ +..++++ .+|+=+++.|
T Consensus 2 ~l~~~~~~~~~li~tG~H~~~~~g~~~~~~f~i-~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~Pd~Vlv~G 75 (346)
T PF02350_consen 2 ALQKDPGFELILIVTGQHLDPEMGDTFFEGFGI-P--KPDYLLDSDSQSMAKSTGLAIIELADVLER---EKPDAVLVLG 75 (346)
T ss_dssp HHHCSTTEEEEEEEECSS--CHHHHHHHHHTT-----SEEEE--STTS-HHHHHHHHHHHHHHHHHH---HT-SEEEEET
T ss_pred hhhhCCCCCEEEEEeCCCCCHHHHHHHHhhCCC-C--CCCcccccccchHHHHHHHHHHHHHHHHHh---cCCCEEEEEc
Confidence 45554 66664 445544 4556666677777 3 34444443332111211222 2233333 4588999999
Q ss_pred CCcccchh---hhhhcCCeEEEEcC
Q 039449 198 DSFRKDYV---PAKSVGMHALLVDR 219 (253)
Q Consensus 198 D~~~~Di~---~a~~~G~~~i~~~~ 219 (253)
|+. .=+. +|...+++.+++..
T Consensus 76 D~~-~~la~alaA~~~~ipv~Hiea 99 (346)
T PF02350_consen 76 DRN-EALAAALAAFYLNIPVAHIEA 99 (346)
T ss_dssp TSH-HHHHHHHHHHHTT-EEEEES-
T ss_pred CCc-hHHHHHHHHHHhCCCEEEecC
Confidence 999 5554 45667999999983
No 295
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=63.41 E-value=16 Score=28.14 Aligned_cols=122 Identities=11% Similarity=0.079 Sum_probs=68.0
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecccc--Cc--------cCC-CHHHHHHH
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLE--GV--------EKP-DPRIYEIA 181 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~--~~--------~kp-~~~~~~~~ 181 (253)
+...+...+..+.+.+. .-+++|-+.+.... +.....-.. .|-.++-..+. +. .-| +.+.=..+
T Consensus 111 ~~~v~s~~~a~~~l~~~--~~vllttGsk~l~~-f~~~~~~~r--~~~RvLP~~~s~~g~~~~~iiam~gPfs~e~n~aL 185 (248)
T PRK08057 111 WIEVDDIEEAAEALAPF--RRVLLTTGRQPLAH-FAAILPEHR--LLVRVLPPPEVLLGLPRAEIIALRGPFSLELERAL 185 (248)
T ss_pred EEEECCHHHHHHHhhcc--CCEEEecCcchHHH-HhhcCCCCE--EEEEECCCchhcCCCChhhEEEeeCCCCHHHHHHH
Confidence 34456778888888766 34566666554322 111111112 44444422221 11 122 24444567
Q ss_pred HHHhCCCCCCceEEEcCCc----ccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhhh
Q 039449 182 LERAGNIAPEEALHIGDSF----RKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSEI 250 (253)
Q Consensus 182 ~~~~~~~~~~~~~~iGD~~----~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~~ 250 (253)
+++++ ++ +++-=||- ..=+.+|+++|++.+++.|+..+ .....+.+++|+.+++.+.+
T Consensus 186 ~~~~~-i~---~lVtK~SG~~g~~eKi~AA~~lgi~vivI~RP~~~-------~~~~~~~~~~e~~~~l~~~~ 247 (248)
T PRK08057 186 LRQHR-ID---VVVTKNSGGAGTEAKLEAARELGIPVVMIARPALP-------YADREFEDVAELVAWLRHLL 247 (248)
T ss_pred HHHcC-CC---EEEEcCCCchhhHHHHHHHHHcCCeEEEEeCCCCC-------CCCcccCCHHHHHHHHHHhh
Confidence 78888 64 33332222 13478999999999999974321 12256789999999887643
No 296
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=61.42 E-value=12 Score=30.45 Aligned_cols=78 Identities=19% Similarity=0.138 Sum_probs=55.4
Q ss_pred cCCChHHHHHHHHHcCCEEEEEeCCCcchh-hhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 115 VFPDSQPFLRWAREKGLIVGIISNAEYRYQ-DVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~-~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
+...++.+-..|.++|++ ++|++....+ -.-++..|++. ...+++|+..+ |..+.-
T Consensus 326 V~~Nakala~~l~~~Gy~--lvtgGTDnHlvLvDLr~~G~dG--------------------arvE~vle~~~-I~~NKN 382 (477)
T KOG2467|consen 326 VLKNAKALASALISRGYK--LVTGGTDNHLVLVDLRPKGVDG--------------------ARVEKVLELCH-IALNKN 382 (477)
T ss_pred HHHHHHHHHHHHHHcCce--EecCCccceEEEEeccccCCch--------------------HHHHHHHHHhh-hhhcCC
Confidence 345667788889999998 5788876432 22233344433 56778999999 988888
Q ss_pred EEEcCCcccchhhhhhcCCeEEE
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALL 216 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~ 216 (253)
-+.||.- .=...+.+.|.++.-
T Consensus 383 tvpGD~S-al~PgGiRiGtPAmT 404 (477)
T KOG2467|consen 383 TVPGDKS-ALSPGGIRIGTPAMT 404 (477)
T ss_pred cCCCCcc-ccCCCceeccchhhc
Confidence 8999998 677788888877544
No 297
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=60.89 E-value=14 Score=30.34 Aligned_cols=45 Identities=24% Similarity=0.363 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHHh----CCCCCCceEEEcCCcc----cchhhhhhcCCeEEEEcC
Q 039449 172 KPDPRIYEIALERA----GNIAPEEALHIGDSFR----KDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 172 kp~~~~~~~~~~~~----~~~~~~~~~~iGD~~~----~Di~~a~~~G~~~i~~~~ 219 (253)
-.|..++..+.+.+ + +.++++++|||..- ||.. |+.+ ..++|+..
T Consensus 348 GdKs~GV~~lQ~y~~~~~~-i~~~~tLHVGDQF~s~GaNDfk-aR~a-~~t~WIas 400 (408)
T PF06437_consen 348 GDKSLGVRALQKYFDPEGG-IKPSETLHVGDQFLSAGANDFK-ARLA-CTTAWIAS 400 (408)
T ss_pred CCcHHhHHHHHHHHHhccC-CCccceeeehhhhhccCCcchh-hhhh-ceeeEecC
Confidence 34567777777777 6 99999999999762 4442 3333 46788874
No 298
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=60.30 E-value=75 Score=24.33 Aligned_cols=87 Identities=18% Similarity=0.254 Sum_probs=53.1
Q ss_pred HHHHHHc-CCEEEEEeCCCcch---hhhhhhhc--CCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEE
Q 039449 123 LRWAREK-GLIVGIISNAEYRY---QDVILPAL--GVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHI 196 (253)
Q Consensus 123 l~~l~~~-g~~~~i~s~~~~~~---~~~~l~~~--gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~i 196 (253)
|++...+ ++.+.+++.+.+-. ++...... .+.+ +++++.+.. ...|-|..-+.+++..| + .|++|
T Consensus 23 lDErAdRedI~vrv~gsGaKm~pe~~~~~~~~~~~~~~p----Df~i~isPN-~a~PGP~~ARE~l~~~~-i---P~IvI 93 (277)
T PRK00994 23 LDERADREDIDVRVVGSGAKMGPEEVEEVVKKMLEEWKP----DFVIVISPN-PAAPGPKKAREILKAAG-I---PCIVI 93 (277)
T ss_pred HHhhhcccCceEEEeccCCCCCHHHHHHHHHHHHHhhCC----CEEEEECCC-CCCCCchHHHHHHHhcC-C---CEEEE
Confidence 3444444 78998898886633 33222222 2333 333333222 23456667777888777 6 59999
Q ss_pred cCCccc-chhhhhhcCCeEEEEc
Q 039449 197 GDSFRK-DYVPAKSVGMHALLVD 218 (253)
Q Consensus 197 GD~~~~-Di~~a~~~G~~~i~~~ 218 (253)
||.+.. +....++.|++.|.+.
T Consensus 94 ~D~p~~K~~d~l~~~g~GYIivk 116 (277)
T PRK00994 94 GDAPGKKVKDAMEEQGLGYIIVK 116 (277)
T ss_pred cCCCccchHHHHHhcCCcEEEEe
Confidence 999832 2367788899998887
No 299
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=60.03 E-value=50 Score=27.01 Aligned_cols=79 Identities=15% Similarity=0.074 Sum_probs=53.9
Q ss_pred cCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceE
Q 039449 115 VFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEAL 194 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 194 (253)
-.||+.-+|.++. +.+.++++|....-.+..++..+.-.. ++..-++.+......+. -+ +=+..++ -++..|+
T Consensus 215 kRPgvD~FL~~~a-~~yEIVi~sse~gmt~~pl~d~lDP~g--~IsYkLfr~~t~y~~G~--Hv-Kdls~LN-Rdl~kVi 287 (393)
T KOG2832|consen 215 KRPGVDYFLGHLA-KYYEIVVYSSEQGMTVFPLLDALDPKG--YISYKLFRGATKYEEGH--HV-KDLSKLN-RDLQKVI 287 (393)
T ss_pred cCchHHHHHHhhc-ccceEEEEecCCccchhhhHhhcCCcc--eEEEEEecCcccccCcc--ch-hhhhhhc-cccceeE
Confidence 3588888999888 449999999998888887888776554 44444454443322221 11 2266777 8889999
Q ss_pred EEcCCc
Q 039449 195 HIGDSF 200 (253)
Q Consensus 195 ~iGD~~ 200 (253)
+|+=..
T Consensus 288 vVd~d~ 293 (393)
T KOG2832|consen 288 VVDFDA 293 (393)
T ss_pred EEEccc
Confidence 997655
No 300
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=59.10 E-value=6.2 Score=30.61 Aligned_cols=89 Identities=15% Similarity=0.161 Sum_probs=58.6
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccc-----cCccCCCHHHHHHHHHHhCCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGL-----EGVEKPDPRIYEIALERAGNI 188 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~-----~~~~kp~~~~~~~~~~~~~~~ 188 (253)
.-.|++.++|....+. +.+++.|.+....+..++..+.-.. ..+.+.++-+. .+.-|. +..++ .
T Consensus 131 ~kRP~vdeFL~~~s~~-~e~v~FTAs~~~Ya~~v~D~LD~~~-~i~~~RlyR~~C~~~~g~yvKd--------ls~~~-~ 199 (262)
T KOG1605|consen 131 RKRPHVDEFLSRVSKW-YELVLFTASLEVYADPLLDILDPDR-KIISHRLYRDSCTLKDGNYVKD--------LSVLG-R 199 (262)
T ss_pred EcCCCHHHHHHHhHHH-HHHHHHHhhhHHHHHHHHHHccCCC-CeeeeeecccceEeECCcEEEE--------cceec-c
Confidence 3458888888888776 7888888888888877777665421 13333333221 111122 25566 6
Q ss_pred CCCceEEEcCCcccchhhhhhcCCeE
Q 039449 189 APEEALHIGDSFRKDYVPAKSVGMHA 214 (253)
Q Consensus 189 ~~~~~~~iGD~~~~Di~~a~~~G~~~ 214 (253)
+..++++|+|++ .-..+--+-|++.
T Consensus 200 dL~~viIiDNsP-~sy~~~p~NgIpI 224 (262)
T KOG1605|consen 200 DLSKVIIVDNSP-QSYRLQPENGIPI 224 (262)
T ss_pred CcccEEEEcCCh-HHhccCccCCCcc
Confidence 788999999999 6777777777665
No 301
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=58.45 E-value=69 Score=23.28 Aligned_cols=29 Identities=31% Similarity=0.329 Sum_probs=24.7
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcc
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYR 142 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~ 142 (253)
.+.+.+.++++.+++.|+.+.+.||+...
T Consensus 74 ll~~~l~~li~~~~~~g~~v~i~TNg~~~ 102 (191)
T TIGR02495 74 TLQAGLPDFLRKVRELGFEVKLDTNGSNP 102 (191)
T ss_pred cCcHhHHHHHHHHHHCCCeEEEEeCCCCH
Confidence 45677889999999999999999999753
No 302
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=58.05 E-value=71 Score=27.90 Aligned_cols=86 Identities=16% Similarity=0.182 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcch-hhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEE
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRY-QDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHI 196 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~-~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~i 196 (253)
++...|..+++.+-++++++-..... .+.+...++++- ....+.+.... ...+ .-++..| ++ ++|
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i----~~~~~~~~~e~----~~~~-~~l~~~G-~~----~vi 150 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDI----VQRSYVTEEDA----RSCV-NDLRARG-IG----AVV 150 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCce----EEEEecCHHHH----HHHH-HHHHHCC-CC----EEE
Confidence 34455555566667888888765533 555555566653 22222222111 1122 2233345 43 889
Q ss_pred cCCcccchhhhhhcCCeEEEEcC
Q 039449 197 GDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 197 GD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
||.. -...|+++|++.|++..
T Consensus 151 G~~~--~~~~A~~~gl~~ili~s 171 (526)
T TIGR02329 151 GAGL--ITDLAEQAGLHGVFLYS 171 (526)
T ss_pred CChH--HHHHHHHcCCceEEEec
Confidence 9998 38899999999999973
No 303
>PRK00208 thiG thiazole synthase; Reviewed
Probab=58.03 E-value=86 Score=24.25 Aligned_cols=96 Identities=22% Similarity=0.244 Sum_probs=61.4
Q ss_pred CCccCCChHHHHHHHHHc---CCEEEEEeCCCcchhhhhhhhcCCCCCccee--EeeeccccCccCCCHHHHHHHHHHhC
Q 039449 112 PYTVFPDSQPFLRWAREK---GLIVGIISNAEYRYQDVILPALGVNQGTEWD--FGVFSGLEGVEKPDPRIYEIALERAG 186 (253)
Q Consensus 112 ~~~~~~~~~~~l~~l~~~---g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~--~~~~~~~~~~~kp~~~~~~~~~~~~~ 186 (253)
+-.++|+..++++..+.. |+.+.-+++.+....+. +..+|-.- ..- ..+.++ .+ -.+++.++.+.+..+
T Consensus 102 ~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~-l~~~G~~~--vmPlg~pIGsg-~g--i~~~~~i~~i~e~~~ 175 (250)
T PRK00208 102 DKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKR-LEEAGCAA--VMPLGAPIGSG-LG--LLNPYNLRIIIEQAD 175 (250)
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH-HHHcCCCE--eCCCCcCCCCC-CC--CCCHHHHHHHHHhcC
Confidence 335678888998887776 99998567666666553 44445443 100 111111 22 334777777776655
Q ss_pred CCCCCceEEEcC---CcccchhhhhhcCCeEEEEcC
Q 039449 187 NIAPEEALHIGD---SFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 187 ~~~~~~~~~iGD---~~~~Di~~a~~~G~~~i~~~~ 219 (253)
++ +++|- ++ .|+..+.+.|...+++++
T Consensus 176 -vp----VIveaGI~tp-eda~~AmelGAdgVlV~S 205 (250)
T PRK00208 176 -VP----VIVDAGIGTP-SDAAQAMELGADAVLLNT 205 (250)
T ss_pred -Ce----EEEeCCCCCH-HHHHHHHHcCCCEEEECh
Confidence 42 55554 35 699999999999999984
No 304
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=55.98 E-value=41 Score=28.29 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=38.0
Q ss_pred eeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhc-------CCeEEEEc
Q 039449 163 VFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSV-------GMHALLVD 218 (253)
Q Consensus 163 ~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~-------G~~~i~~~ 218 (253)
++.+..|.-.-+.+.+.++.+-...++|+|+++|=|+. ..-.+...| |+..|.++
T Consensus 186 vIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam-~GQdA~~~A~aF~e~l~itGvIlT 247 (451)
T COG0541 186 VIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAM-IGQDAVNTAKAFNEALGITGVILT 247 (451)
T ss_pred EEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecc-cchHHHHHHHHHhhhcCCceEEEE
Confidence 44444455555666776665554447899999999998 777766554 77777776
No 305
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=54.88 E-value=7.6 Score=29.56 Aligned_cols=26 Identities=15% Similarity=0.040 Sum_probs=12.8
Q ss_pred EEecCCceeccCC-----CHHHHHHHHHHHc
Q 039449 11 TVDVTGTLLAYKG-----ELGDYYCMAAKSV 36 (253)
Q Consensus 11 ~fD~DGTL~~~~~-----~~~~~~~~~~~~~ 36 (253)
+||+||||.+... .....+...++++
T Consensus 1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~L~~L 31 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDAAVPPPELRELLRAL 31 (235)
T ss_dssp EEE-TTTSS---S-GGG----HHHHHHHHHH
T ss_pred CcccCCccCCCCCCccccCCCHHHHHHHHHH
Confidence 6999999998665 2334444455544
No 306
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=54.71 E-value=94 Score=25.04 Aligned_cols=37 Identities=16% Similarity=0.168 Sum_probs=30.2
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
-...++.+++++|+++ ++|......+..+++.+|++.
T Consensus 15 fFk~lI~elekkG~ev-~iT~rd~~~v~~LLd~ygf~~ 51 (346)
T COG1817 15 FFKNLIWELEKKGHEV-LITCRDFGVVTELLDLYGFPY 51 (346)
T ss_pred HHHHHHHHHHhCCeEE-EEEEeecCcHHHHHHHhCCCe
Confidence 4568899999999887 677777777888999998875
No 307
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.94 E-value=58 Score=27.11 Aligned_cols=55 Identities=15% Similarity=0.280 Sum_probs=38.9
Q ss_pred eeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhc-------CCeEEEEc
Q 039449 163 VFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSV-------GMHALLVD 218 (253)
Q Consensus 163 ~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~-------G~~~i~~~ 218 (253)
++.+..|..+...+.|++...--+.++|+++++|=|.- ..-.+..++ ++.++.++
T Consensus 187 IIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDas-iGQaae~Qa~aFk~~vdvg~vIlT 248 (483)
T KOG0780|consen 187 IIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDAS-IGQAAEAQARAFKETVDVGAVILT 248 (483)
T ss_pred EEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecc-ccHhHHHHHHHHHHhhccceEEEE
Confidence 55566667788888888876655448899999999988 566655544 55555554
No 308
>PLN02334 ribulose-phosphate 3-epimerase
Probab=53.61 E-value=96 Score=23.50 Aligned_cols=97 Identities=9% Similarity=0.001 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCc--chhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCC-CCCceE
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEY--RYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNI-APEEAL 194 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~-~~~~~~ 194 (253)
...+.++.+++.|..+++..+... +..+..+..-|++ |+-..-........+..+..+..+-+--. . ..-.+.
T Consensus 103 ~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~D---yi~~~~v~pg~~~~~~~~~~~~~i~~~~~-~~~~~~I~ 178 (229)
T PLN02334 103 HLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVD---MVLVMSVEPGFGGQSFIPSMMDKVRALRK-KYPELDIE 178 (229)
T ss_pred hHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCCC---EEEEEEEecCCCccccCHHHHHHHHHHHH-hCCCCcEE
Confidence 456888999999999998887432 2233222221133 22221111111222333455554433222 2 123566
Q ss_pred EEc-CCcccchhhhhhcCCeEEEEcC
Q 039449 195 HIG-DSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 195 ~iG-D~~~~Di~~a~~~G~~~i~~~~ 219 (253)
++| =+. .++....++|+..+.+-+
T Consensus 179 a~GGI~~-e~i~~l~~aGad~vvvgs 203 (229)
T PLN02334 179 VDGGVGP-STIDKAAEAGANVIVAGS 203 (229)
T ss_pred EeCCCCH-HHHHHHHHcCCCEEEECh
Confidence 774 566 799999999999887763
No 309
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=53.47 E-value=1.2e+02 Score=25.48 Aligned_cols=118 Identities=13% Similarity=0.044 Sum_probs=65.7
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCc--chhhhhhhhcCCCCCcceeEeeeccc-cCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEY--RYQDVILPALGVNQGTEWDFGVFSGL-EGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~gl~~~~~f~~~~~~~~-~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
.+...+++.+++.++..++...... ......++..|+.- +..+. .-..--++...+++++++| ++....
T Consensus 51 ~d~~~l~~~~~~~~id~vi~~~e~~l~~~~~~~l~~~gi~~-------~g~~~~~~~~~~dK~~~k~~l~~~g-Ip~p~~ 122 (423)
T TIGR00877 51 TDIEALVEFAKKKKIDLAVIGPEAPLVLGLVDALEEAGIPV-------FGPTKEAAQLEGSKAFAKDFMKRYG-IPTAEY 122 (423)
T ss_pred CCHHHHHHHHHHhCCCEEEECCchHHHHHHHHHHHHCCCeE-------ECCCHHHHHHHCCHHHHHHHHHHCC-CCCCCe
Confidence 3556677777777765554432211 11233455555531 11111 1111235567778899999 987777
Q ss_pred EEEcCCcccchhhhhhcCCe-EEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhh
Q 039449 194 LHIGDSFRKDYVPAKSVGMH-ALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~-~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~ 249 (253)
..+.+.. .-...+...|.+ .|.=+..+.. ..+..++.+.+|+...+.+.
T Consensus 123 ~~~~~~~-~~~~~~~~~g~P~~VvKp~~~~g------g~Gv~~v~~~~el~~~~~~~ 172 (423)
T TIGR00877 123 EVFTDPE-EALSYIQEKGAPAIVVKADGLAA------GKGVIVAKTNEEAIKAVEEI 172 (423)
T ss_pred EEECCHH-HHHHHHHhcCCCeEEEEECCCCC------CCCEEEECCHHHHHHHHHHH
Confidence 7775543 223456778888 5544422211 12456888988888776654
No 310
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=53.20 E-value=14 Score=28.29 Aligned_cols=29 Identities=7% Similarity=0.119 Sum_probs=25.4
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcc
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYR 142 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~ 142 (253)
.+.++..++++++++.|+++.+-||+...
T Consensus 84 ll~~~l~~li~~l~~~g~~v~leTNGtl~ 112 (238)
T TIGR03365 84 ALQKPLGELIDLGKAKGYRFALETQGSVW 112 (238)
T ss_pred hhhHhHHHHHHHHHHCCCCEEEECCCCCc
Confidence 34578999999999999999999999864
No 311
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=53.00 E-value=1.1e+02 Score=24.52 Aligned_cols=25 Identities=24% Similarity=0.211 Sum_probs=19.3
Q ss_pred EEEcCCcccchhhhhhcCCeEEEEc
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
++|+|....-..+|+..|++++.+.
T Consensus 96 lVi~d~~~~~~~aA~~~~iP~i~i~ 120 (321)
T TIGR00661 96 LIISDFEYSTVVAAKLLKIPVICIS 120 (321)
T ss_pred EEEECCchHHHHHHHhcCCCEEEEe
Confidence 5566655456779999999999776
No 312
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=52.87 E-value=73 Score=21.88 Aligned_cols=95 Identities=18% Similarity=0.094 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCEEEEEeCCCcch-----hhhhhhhcCCCCCccee-Eeeecccc-----CccCCCHHHHHHHHHHhCCC
Q 039449 120 QPFLRWAREKGLIVGIISNAEYRY-----QDVILPALGVNQGTEWD-FGVFSGLE-----GVEKPDPRIYEIALERAGNI 188 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~~~-----~~~~l~~~gl~~~~~f~-~~~~~~~~-----~~~kp~~~~~~~~~~~~~~~ 188 (253)
.+.+....++|-++.++-|+.... ........+..+ ... .+...... ...-..+..-..+.+.++ +
T Consensus 25 a~~i~~~~~~gg~i~~~G~G~S~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 101 (138)
T PF13580_consen 25 ADLIAEALRNGGRIFVCGNGHSAAIASHFAADLGGLFGVNR--ILLPAIALNDDALTAISNDLEYDEGFARQLLALYD-I 101 (138)
T ss_dssp HHHHHHHHHTT--EEEEESTHHHHHHHHHHHHHHCHSSSTS--SS-SEEETTSTHHHHHHHHTTGGGTHHHHHHHHTT--
T ss_pred HHHHHHHHHCCCEEEEEcCchhhhHHHHHHHHHhcCcCCCc--ccccccccccchHhhhhcccchhhHHHHHHHHHcC-C
Confidence 355555556777888887775532 122333334443 222 22222211 001112334456667777 8
Q ss_pred CCCceEEE----cCCcccchhh---hhhcCCeEEEEc
Q 039449 189 APEEALHI----GDSFRKDYVP---AKSVGMHALLVD 218 (253)
Q Consensus 189 ~~~~~~~i----GD~~~~Di~~---a~~~G~~~i~~~ 218 (253)
.+.+++++ |.++ +=+.+ |++.|+++|.+.
T Consensus 102 ~~gDvli~iS~SG~s~-~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 102 RPGDVLIVISNSGNSP-NVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp -TT-EEEEEESSS-SH-HHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCEEEEECCCCCCH-HHHHHHHHHHHCCCEEEEEe
Confidence 88888877 6677 66654 555699998875
No 313
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=52.86 E-value=60 Score=26.79 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=25.0
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCc
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEY 141 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~ 141 (253)
..+.|++.++++++++.|+.+.+.||+..
T Consensus 73 Pll~~~~~~il~~~~~~g~~~~i~TNG~l 101 (378)
T PRK05301 73 PLLRKDLEELVAHARELGLYTNLITSGVG 101 (378)
T ss_pred cCCchhHHHHHHHHHHcCCcEEEECCCcc
Confidence 35678899999999999999999999864
No 314
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=52.61 E-value=50 Score=26.96 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=24.7
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCc
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEY 141 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~ 141 (253)
.+.|++.++++.+++.|+.+.+.||+..
T Consensus 65 ll~~~~~~ii~~~~~~g~~~~l~TNG~l 92 (358)
T TIGR02109 65 LARPDLVELVAHARRLGLYTNLITSGVG 92 (358)
T ss_pred cccccHHHHHHHHHHcCCeEEEEeCCcc
Confidence 4678999999999999999999999864
No 315
>KOG0205 consensus Plasma membrane H+-transporting ATPase [Inorganic ion transport and metabolism]
Probab=52.35 E-value=46 Score=29.70 Aligned_cols=101 Identities=15% Similarity=0.025 Sum_probs=66.2
Q ss_pred CCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCc-----------------cCCCHHHH
Q 039449 116 FPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGV-----------------EKPDPRIY 178 (253)
Q Consensus 116 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~-----------------~kp~~~~~ 178 (253)
..+..+.++.....|..|.++|+.........-+++|.....|-..-......+. .--.|+--
T Consensus 494 rhdsa~tirral~lGv~VkmitgdqlaI~keTgrrlgmgtnmypss~llG~~~~~~~~~~~v~elie~adgfAgVfpehK 573 (942)
T KOG0205|consen 494 RHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSALLGLGKDGSMPGSPVDELIEKADGFAGVFPEHK 573 (942)
T ss_pred ccchHHHHHHHHhccceeeeecchHHHHHHhhhhhhccccCcCCchhhccCCCCCCCCCCcHHHHhhhccCccccCHHHH
Confidence 4567788888888999999999998777776667766543111111111111110 11123333
Q ss_pred HHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 179 EIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 179 ~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
..+.+.+. -...-|-+.||.. ||..+.+++.+..+..+
T Consensus 574 y~iV~~Lq-~r~hi~gmtgdgv-ndapaLKkAdigiava~ 611 (942)
T KOG0205|consen 574 YEIVKILQ-ERKHIVGMTGDGV-NDAPALKKADIGIAVAD 611 (942)
T ss_pred HHHHHHHh-hcCceecccCCCc-ccchhhcccccceeecc
Confidence 45566666 6668899999999 99999999987766554
No 316
>COG4943 Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms]
Probab=52.08 E-value=1.6e+02 Score=25.44 Aligned_cols=38 Identities=21% Similarity=0.100 Sum_probs=26.2
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVN 154 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 154 (253)
+.+.+.+..+++.|++++|=--+.-...-..|+.+.++
T Consensus 401 ~~~~~iI~r~ReaG~~IyIDDFGTGYSnL~YLq~L~VD 438 (524)
T COG4943 401 KKMTPIILRLREAGHEIYIDDFGTGYSNLHYLQSLPVD 438 (524)
T ss_pred hhhhHHHHHHHhcCCeEEEccCcCcchhHHHHhhCCcc
Confidence 45778899999999999875544444444455655554
No 317
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=51.89 E-value=88 Score=24.77 Aligned_cols=99 Identities=13% Similarity=0.076 Sum_probs=55.0
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCC---HHHHHHHHHHhCCCCCCceEE
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPD---PRIYEIALERAGNIAPEEALH 195 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~---~~~~~~~~~~~~~~~~~~~~~ 195 (253)
..++|+..++.||-+..+.-.+.+.++.+++...-...+.+-. .+.......+- ..+...++++.. ++ =+++
T Consensus 4 ~k~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq--~s~~~~~~~~~~~~~~~~~~~a~~~~-VP--ValH 78 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILA--GTPGTFKHAGTEYIVALCSAASTTYN-MP--LALH 78 (282)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEE--eCccHHhhCCHHHHHHHHHHHHHHCC-CC--EEEE
Confidence 4678888888888888777777777776665443222001111 11111111111 123344555554 43 3444
Q ss_pred E--cCCcccchhhhhhcCCeEEEEcCCCCC
Q 039449 196 I--GDSFRKDYVPAKSVGMHALLVDRFKTP 223 (253)
Q Consensus 196 i--GD~~~~Di~~a~~~G~~~i~~~~~~~~ 223 (253)
. |.++ .++..|.++|+.+|+++.+..+
T Consensus 79 LDHg~~~-e~i~~ai~~GFtSVM~DgS~lp 107 (282)
T TIGR01858 79 LDHHESL-DDIRQKVHAGVRSAMIDGSHFP 107 (282)
T ss_pred CCCCCCH-HHHHHHHHcCCCEEeecCCCCC
Confidence 4 3455 4778888889999999965443
No 318
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=51.22 E-value=44 Score=26.36 Aligned_cols=98 Identities=23% Similarity=0.320 Sum_probs=60.4
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCcc------CCCHHHHHHHHHHhCCCCCC
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVE------KPDPRIYEIALERAGNIAPE 191 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~------kp~~~~~~~~~~~~~~~~~~ 191 (253)
..+.+|+..++.||-+.-+--.+.+.+..+++...-.. ..+++....+.. ..-..+...+++.++ ++
T Consensus 5 ~~~~ll~~Ake~~yAvpAfN~~nlE~~~AileaA~e~~----sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~-vP-- 77 (286)
T COG0191 5 SMKELLDKAKENGYAVPAFNINNLETLQAILEAAEEEK----SPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG-VP-- 77 (286)
T ss_pred cHHHHHHHHHHcCCceeeeeecCHHHHHHHHHHHHHhC----CCEEEEecccHHHHhchHHHHHHHHHHHHHHCC-CC--
Confidence 34788888888888887776666677776666543322 111221111111 122345556677777 54
Q ss_pred ceEEE--cCCcccchhhhhhcCCeEEEEcCCCCC
Q 039449 192 EALHI--GDSFRKDYVPAKSVGMHALLVDRFKTP 223 (253)
Q Consensus 192 ~~~~i--GD~~~~Di~~a~~~G~~~i~~~~~~~~ 223 (253)
=+++. |++. .++..+.++|+.+++++++..+
T Consensus 78 V~lHlDHg~~~-~~~~~ai~~GFsSvMiDgS~~~ 110 (286)
T COG0191 78 VALHLDHGASF-EDCKQAIRAGFSSVMIDGSHLP 110 (286)
T ss_pred EEEECCCCCCH-HHHHHHHhcCCceEEecCCcCC
Confidence 34444 5577 6999999999999999964444
No 319
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=51.12 E-value=46 Score=25.47 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=38.0
Q ss_pred CCChHHHHHHHHHHHHHhCCC-----CCCccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC
Q 039449 90 DYDEDTFEKIFRRIYASFGSS-----APYTVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVN 154 (253)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 154 (253)
.+.++++.+........+... ++....||=...-..|++.|++++++|..+....+..++..|+.
T Consensus 41 Km~pe~~e~~~~~~~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k~kd~l~~~g~G 110 (276)
T PF01993_consen 41 KMGPEDVEEVVTKMLKEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKKAKDALEEEGFG 110 (276)
T ss_dssp --SHHHHHHHHHHHHHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGGGHHHHHHTT-E
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchhhHHHHHhcCCc
Confidence 345565555554444333221 22233456555666678899999999999887777778877765
No 320
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=50.70 E-value=23 Score=25.60 Aligned_cols=85 Identities=18% Similarity=0.268 Sum_probs=49.6
Q ss_pred cCCChHHHHHHHHH---cCCEEEEEeCCCcch-hhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHh---CC
Q 039449 115 VFPDSQPFLRWARE---KGLIVGIISNAEYRY-QDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERA---GN 187 (253)
Q Consensus 115 ~~~~~~~~l~~l~~---~g~~~~i~s~~~~~~-~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~---~~ 187 (253)
+.....++++.|.+ .+-++++++..+... ...+.+.+|+.- ....+. +++-+...++++ |
T Consensus 59 I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i----~~~~~~--------~~~e~~~~i~~~~~~G- 125 (176)
T PF06506_consen 59 IPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDI----KIYPYD--------SEEEIEAAIKQAKAEG- 125 (176)
T ss_dssp E---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EE----EEEEES--------SHHHHHHHHHHHHHTT-
T ss_pred ECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCce----EEEEEC--------CHHHHHHHHHHHHHcC-
Confidence 34455566555544 567898888766544 555556666642 111111 123344455554 4
Q ss_pred CCCCceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 188 IAPEEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 188 ~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
++ ++||+.. -...|++.|++++++.
T Consensus 126 ~~----viVGg~~--~~~~A~~~gl~~v~i~ 150 (176)
T PF06506_consen 126 VD----VIVGGGV--VCRLARKLGLPGVLIE 150 (176)
T ss_dssp ------EEEESHH--HHHHHHHTTSEEEESS
T ss_pred Cc----EEECCHH--HHHHHHHcCCcEEEEE
Confidence 43 8999998 3899999999999987
No 321
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=50.39 E-value=23 Score=23.70 Aligned_cols=29 Identities=10% Similarity=0.078 Sum_probs=23.9
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhh
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQD 145 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 145 (253)
+.+.+.++.++++|.+++.+|+.....+.
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIAITGNPNSTLA 89 (128)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCCchh
Confidence 45778899999999999999998765544
No 322
>KOG0208 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=49.58 E-value=37 Score=31.71 Aligned_cols=91 Identities=21% Similarity=0.132 Sum_probs=51.9
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchh-hhhhhhc---CCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCc
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQ-DVILPAL---GVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEE 192 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~-~~~l~~~---gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 192 (253)
.+..+.++....+|++++.+....-..- ....+++ -++..--|-..+ .-+. +-|+.....-.-+++.+ ...
T Consensus 650 ~dy~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~~~~~Rd~vEs~l~FlGLi-VmeN-kLK~~T~~VI~eL~~An---IRt 724 (1140)
T KOG0208|consen 650 ADYQEVLKEYTHQGFRVIALASKELETSTLQKAQKLSRDTVESNLEFLGLI-VMEN-KLKEETKRVIDELNRAN---IRT 724 (1140)
T ss_pred ccHHHHHHHHHhCCeEEEEEecCccCcchHHHHhhccHhhhhccceeeEEE-Eeec-ccccccHHHHHHHHhhc---ceE
Confidence 3677888888999999977776654332 1122222 122211111111 1111 12333333333344434 567
Q ss_pred eEEEcCCcccchhhhhhcCC
Q 039449 193 ALHIGDSFRKDYVPAKSVGM 212 (253)
Q Consensus 193 ~~~iGD~~~~Di~~a~~~G~ 212 (253)
++.-||+..+-+..|+++||
T Consensus 725 VMcTGDNllTaisVakeCgm 744 (1140)
T KOG0208|consen 725 VMCTGDNLLTAISVAKECGM 744 (1140)
T ss_pred EEEcCCchheeeehhhcccc
Confidence 88889999999999999998
No 323
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=49.32 E-value=25 Score=23.47 Aligned_cols=29 Identities=31% Similarity=0.249 Sum_probs=23.1
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhh
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQD 145 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 145 (253)
+.+.+.++.++++|.+++.+|+.......
T Consensus 60 ~e~~~~~~~a~~~g~~vi~iT~~~~s~la 88 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVAITNVVGSTLA 88 (126)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCCCChHH
Confidence 35678888899999999999998765443
No 324
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=48.96 E-value=1.2e+02 Score=26.71 Aligned_cols=84 Identities=17% Similarity=0.148 Sum_probs=50.2
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcc-hhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEc
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYR-YQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIG 197 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~-~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iG 197 (253)
+...|..+++.+-++++++-.... ..+.+.+.+++.- ....+.+.... +....-++..| ++ ++||
T Consensus 96 il~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i----~~~~~~~~~e~-----~~~v~~lk~~G-~~----~vvG 161 (538)
T PRK15424 96 VMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRI----EQRSYVTEEDA-----RGQINELKANG-IE----AVVG 161 (538)
T ss_pred HHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCce----EEEEecCHHHH-----HHHHHHHHHCC-CC----EEEc
Confidence 445555556666788888876543 3555555666653 22222222111 11222233445 54 8899
Q ss_pred CCcccchhhhhhcCCeEEEEc
Q 039449 198 DSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 198 D~~~~Di~~a~~~G~~~i~~~ 218 (253)
|.. -...|.++|+..+++.
T Consensus 162 ~~~--~~~~A~~~g~~g~~~~ 180 (538)
T PRK15424 162 AGL--ITDLAEEAGMTGIFIY 180 (538)
T ss_pred Cch--HHHHHHHhCCceEEec
Confidence 988 3899999999999986
No 325
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=48.78 E-value=50 Score=27.27 Aligned_cols=94 Identities=16% Similarity=0.183 Sum_probs=56.5
Q ss_pred hHHHHHHHHHcC-CE-EEEEeCCCc--chhhhhhhhcCCC-CCcceeEeee--ccccCcc-CCCHHHHHHHHHHhCCCCC
Q 039449 119 SQPFLRWAREKG-LI-VGIISNAEY--RYQDVILPALGVN-QGTEWDFGVF--SGLEGVE-KPDPRIYEIALERAGNIAP 190 (253)
Q Consensus 119 ~~~~l~~l~~~g-~~-~~i~s~~~~--~~~~~~l~~~gl~-~~~~f~~~~~--~~~~~~~-kp~~~~~~~~~~~~~~~~~ 190 (253)
..++++++.+.+ +. .+++|+.-. +.....++.+++. + -++--+- ....+.. ..--..+..++++ .+|
T Consensus 19 mapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~p--dy~L~i~~~~~tl~~~t~~~i~~~~~vl~~---~kP 93 (383)
T COG0381 19 MAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKP--DYDLNIMKPGQTLGEITGNIIEGLSKVLEE---EKP 93 (383)
T ss_pred HhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCC--CcchhccccCCCHHHHHHHHHHHHHHHHHh---hCC
Confidence 457788888875 54 466777766 7788899999988 4 2221111 1111100 0111233344443 568
Q ss_pred CceEEEcCCcccchhhhh---hcCCeEEEEc
Q 039449 191 EEALHIGDSFRKDYVPAK---SVGMHALLVD 218 (253)
Q Consensus 191 ~~~~~iGD~~~~Di~~a~---~~G~~~i~~~ 218 (253)
+-+++-||+. +-+.+|. ...++..++.
T Consensus 94 D~VlVhGDT~-t~lA~alaa~~~~IpV~HvE 123 (383)
T COG0381 94 DLVLVHGDTN-TTLAGALAAFYLKIPVGHVE 123 (383)
T ss_pred CEEEEeCCcc-hHHHHHHHHHHhCCceEEEe
Confidence 9999999999 7777444 4477888777
No 326
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=48.31 E-value=1.3e+02 Score=23.64 Aligned_cols=37 Identities=22% Similarity=0.255 Sum_probs=28.8
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 174 DPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
+++-+...+.... ++||.++ +-...|...|.+++.+.
T Consensus 240 ~~~e~~~~i~~~~-------~vI~~Rl-H~~I~A~~~gvP~i~i~ 276 (298)
T TIGR03609 240 DPEELLGLFASAR-------LVIGMRL-HALILAAAAGVPFVALS 276 (298)
T ss_pred CHHHHHHHHhhCC-------EEEEech-HHHHHHHHcCCCEEEee
Confidence 4444444555554 8999999 79999999999999886
No 327
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=48.03 E-value=1.3e+02 Score=23.39 Aligned_cols=97 Identities=12% Similarity=0.189 Sum_probs=49.9
Q ss_pred cCCChHHHHHHHHHcCCEEE-EEeCCCc-chhhhhhhhcCCCCCcceeEeee-ccccCcc-CCCHHHHHHHHHHhCCCCC
Q 039449 115 VFPDSQPFLRWAREKGLIVG-IISNAEY-RYQDVILPALGVNQGTEWDFGVF-SGLEGVE-KPDPRIYEIALERAGNIAP 190 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~-i~s~~~~-~~~~~~l~~~gl~~~~~f~~~~~-~~~~~~~-kp~~~~~~~~~~~~~~~~~ 190 (253)
+.+...+++..+++.|+..+ +++-... +.+..+.+.. .. |-.+++ .+..|.. .-.++ ....++++... .
T Consensus 125 p~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~--~g---fiy~vs~~G~TG~~~~~~~~-~~~~i~~lr~~-~ 197 (256)
T TIGR00262 125 PLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKS--QG---FVYLVSRAGVTGARNRAASA-LNELVKRLKAY-S 197 (256)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhC--CC---CEEEEECCCCCCCcccCChh-HHHHHHHHHhh-c
Confidence 34567788999999998866 4444333 2334444432 22 112222 2223332 11222 22333333201 1
Q ss_pred CceEEEcCCcc--cchhhhhhcCCeEEEEc
Q 039449 191 EEALHIGDSFR--KDYVPAKSVGMHALLVD 218 (253)
Q Consensus 191 ~~~~~iGD~~~--~Di~~a~~~G~~~i~~~ 218 (253)
+..+++|=+.. .++..+..+|...+.+.
T Consensus 198 ~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 198 AKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 22366776551 48888888999988876
No 328
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=47.69 E-value=18 Score=26.54 Aligned_cols=74 Identities=15% Similarity=0.093 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcC-CCC--CcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEE
Q 039449 120 QPFLRWAREKGLIVGIISNAEYRYQDVILPALG-VNQ--GTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHI 196 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~g-l~~--~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~i 196 (253)
..+|..++++|++++++.+.-........+.+. +.. ...|+.++.-++. -.+-+..+| .+++++...
T Consensus 108 Pnll~~a~~~~ip~~LvNarls~~s~~~~~~~~~~~r~~l~~f~~i~aqs~~---------da~r~~~lG-~~~~~v~v~ 177 (186)
T PF04413_consen 108 PNLLREAKRRGIPVVLVNARLSERSFRRYRRFPFLFRPLLSRFDRILAQSEA---------DAERFRKLG-APPERVHVT 177 (186)
T ss_dssp HHHHHH-----S-EEEEEE--------------HHHHHHGGG-SEEEESSHH---------HHHHHHTTT--S--SEEE-
T ss_pred HHHHHHHhhcCCCEEEEeeeeccccchhhhhhHHHHHHHHHhCCEEEECCHH---------HHHHHHHcC-CCcceEEEe
Confidence 377889999999999998876643222222221 000 1134444333322 224577889 999999999
Q ss_pred cCCcccch
Q 039449 197 GDSFRKDY 204 (253)
Q Consensus 197 GD~~~~Di 204 (253)
||-- .|.
T Consensus 178 GnlK-fd~ 184 (186)
T PF04413_consen 178 GNLK-FDQ 184 (186)
T ss_dssp --GG-G--
T ss_pred Ccch-hcc
Confidence 9877 565
No 329
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=47.54 E-value=1.2e+02 Score=22.92 Aligned_cols=100 Identities=9% Similarity=-0.011 Sum_probs=53.1
Q ss_pred CCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHH---HHhCCCCCC-
Q 039449 116 FPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIAL---ERAGNIAPE- 191 (253)
Q Consensus 116 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~---~~~~~~~~~- 191 (253)
.+...++++.+++.|.+.+++-|-.+.. +.+...+...+ .+-....-...+..+--+..++++- +....-..+
T Consensus 92 ~~~~~~~l~~ik~~g~k~GlalnP~Tp~-~~i~~~l~~~D--~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~ 168 (220)
T PRK08883 92 SEHVDRTLQLIKEHGCQAGVVLNPATPL-HHLEYIMDKVD--LILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDI 168 (220)
T ss_pred cccHHHHHHHHHHcCCcEEEEeCCCCCH-HHHHHHHHhCC--eEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCe
Confidence 3567799999999999999888876643 22223333332 2222111222233333344444332 222100111
Q ss_pred ceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 192 EALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 192 ~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
.+.+.|-=-..++....++|+..+.+-
T Consensus 169 ~I~vdGGI~~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 169 RLEIDGGVKVDNIREIAEAGADMFVAG 195 (220)
T ss_pred eEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 244455333357888899999988775
No 330
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=47.47 E-value=69 Score=23.63 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=48.7
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhc-CCCCCcceeEeeeccccC-----------ccCCCHHHHHHH
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPAL-GVNQGTEWDFGVFSGLEG-----------VEKPDPRIYEIA 181 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~-gl~~~~~f~~~~~~~~~~-----------~~kp~~~~~~~~ 181 (253)
....|+..+|..|++.++.+-..+.... ++.+-+.+ ++. .+|.++.|+.-. ..|+.|..++.+
T Consensus 29 ~y~~GAd~Ll~~Lr~g~~dv~yMpAH~~--q~~FPqtme~L~---~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~li 103 (254)
T COG5426 29 TYHEGADPLLKALRGGEYDVTYMPAHDA--QEKFPQTMEGLD---AYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLI 103 (254)
T ss_pred ecccCchHHHHHHhCCCcceEEechHHH--HHhcchhhhhhc---ccceEEEeecCCceeeccccceeecccCccHHHHH
Confidence 4557999999999998888776665443 23333333 343 345555554322 237888888766
Q ss_pred HHHhCCCCCCceEEEcCCc
Q 039449 182 LERAGNIAPEEALHIGDSF 200 (253)
Q Consensus 182 ~~~~~~~~~~~~~~iGD~~ 200 (253)
....+ +..-.+|||--+
T Consensus 104 kdyV~--~GGGLLMiGGY~ 120 (254)
T COG5426 104 KDYVE--NGGGLLMIGGYL 120 (254)
T ss_pred HHHHh--cCCcEEEEccEE
Confidence 55543 345567777643
No 331
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=47.28 E-value=20 Score=27.14 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=22.9
Q ss_pred HHHcCCEEEEEeCCCcchhhhhhhhcCCC
Q 039449 126 AREKGLIVGIISNAEYRYQDVILPALGVN 154 (253)
Q Consensus 126 l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 154 (253)
++++|++++++|+.....+..+++.+++.
T Consensus 26 ~~~~gi~~viaTGR~~~~v~~~~~~l~l~ 54 (236)
T TIGR02471 26 GSGDAVGFGIATGRSVESAKSRYAKLNLP 54 (236)
T ss_pred hcCCCceEEEEeCCCHHHHHHHHHhCCCC
Confidence 35678888888888888888888877765
No 332
>PLN02591 tryptophan synthase
Probab=46.59 E-value=1.4e+02 Score=23.22 Aligned_cols=98 Identities=11% Similarity=0.115 Sum_probs=52.9
Q ss_pred CCChHHHHHHHHHcCCEEEEEe-CCCc-chhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 116 FPDSQPFLRWAREKGLIVGIIS-NAEY-RYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 116 ~~~~~~~l~~l~~~g~~~~i~s-~~~~-~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
++...++...+++.|+..+.+- -... +.++.+.+.. .. +...+-..+..|.....+..+...+++.. --.+-.
T Consensus 117 ~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~--~g--FIY~Vs~~GvTG~~~~~~~~~~~~i~~vk-~~~~~P 191 (250)
T PLN02591 117 LEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEAS--EG--FVYLVSSTGVTGARASVSGRVESLLQELK-EVTDKP 191 (250)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhC--CC--cEEEeeCCCCcCCCcCCchhHHHHHHHHH-hcCCCc
Confidence 3457788888999997765554 4443 2344443332 22 22222223333433232344555555554 212344
Q ss_pred EEEcCCc--ccchhhhhhcCCeEEEEc
Q 039449 194 LHIGDSF--RKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 194 ~~iGD~~--~~Di~~a~~~G~~~i~~~ 218 (253)
+++|=.. ..|+..+.+.|...+.+.
T Consensus 192 v~vGFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 192 VAVGFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred eEEeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 5555544 148888888899998886
No 333
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=46.28 E-value=1.8e+02 Score=24.58 Aligned_cols=119 Identities=8% Similarity=-0.031 Sum_probs=68.1
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcc--hhhhhhhhcCCCCCcceeEeeeccccC-ccCCCHHHHHHHHHHhCCCCCCce
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYR--YQDVILPALGVNQGTEWDFGVFSGLEG-VEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~--~~~~~l~~~gl~~~~~f~~~~~~~~~~-~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
.+..++++.+++.++.++++.....- .+-..++.+|+.. +..+... .---++...+.+++++| ++--..
T Consensus 55 ~d~~~l~~~a~~~~iD~Vv~g~E~~l~~glad~~~~~Gip~-------~Gp~~~aa~le~dK~~~K~~l~~~g-Ipt~~~ 126 (426)
T PRK13789 55 LDKSSVQSFLKSNPFDLIVVGPEDPLVAGFADWAAELGIPC-------FGPDSYCAQVEGSKHFAKSLMKEAK-IPTASY 126 (426)
T ss_pred CCHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHHHcCCCc-------CCCHHHHHHHHcCHHHHHHHHHHcC-CCCCCe
Confidence 35567777778877777664322221 1223455677653 1111111 11234567778899999 886666
Q ss_pred EEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhhh
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSEI 250 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~~ 250 (253)
..+.|.. .-...++..|.+.|.=+..... ..+..++.+.+|+...+...+
T Consensus 127 ~~~~~~~-ea~~~~~~~~~PvVVKp~~~~~------gkGV~vv~~~eel~~a~~~~~ 176 (426)
T PRK13789 127 KTFTEYS-SSLSYLESEMLPIVIKADGLAA------GKGVTVATEKKMAKRALKEIF 176 (426)
T ss_pred EeeCCHH-HHHHHHHhcCCCEEEEeCCCCC------CCcEEEECCHHHHHHHHHHHH
Confidence 6665433 2334456778887765532211 235578899999988877643
No 334
>COG4483 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.25 E-value=17 Score=21.28 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=20.2
Q ss_pred HHHHHHHhCCCCCCceEEEcCCcccchhhhh
Q 039449 178 YEIALERAGNIAPEEALHIGDSFRKDYVPAK 208 (253)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~ 208 (253)
.+++++++| -++++||.. .||++..
T Consensus 7 VqQlLK~~G-----~ivyfg~r~-~~iemm~ 31 (68)
T COG4483 7 VQQLLKKFG-----IIVYFGKRL-YDIEMMQ 31 (68)
T ss_pred HHHHHHHCC-----eeeecCCHH-HHHHHHH
Confidence 457888888 479999999 7998754
No 335
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=46.07 E-value=33 Score=22.87 Aligned_cols=29 Identities=21% Similarity=0.210 Sum_probs=23.3
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhh
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQD 145 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 145 (253)
+.+.+.++.++++|.+++.+|+.....+.
T Consensus 61 ~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (120)
T cd05710 61 KETVAAAKFAKEKGATVIGLTDDEDSPLA 89 (120)
T ss_pred hHHHHHHHHHHHcCCeEEEEECCCCCcHH
Confidence 45778888899999999999998775433
No 336
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=45.46 E-value=2.9 Score=32.39 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=13.7
Q ss_pred CceEEEEecCCceeccC
Q 039449 6 RLRCITVDVTGTLLAYK 22 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~ 22 (253)
+-|++++|+|+||+++.
T Consensus 88 ~kk~lVLDLDeTLvHss 104 (262)
T KOG1605|consen 88 GRKTLVLDLDETLVHSS 104 (262)
T ss_pred CCceEEEeCCCcccccc
Confidence 35889999999988855
No 337
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=45.33 E-value=1.3e+02 Score=22.59 Aligned_cols=41 Identities=15% Similarity=0.048 Sum_probs=33.1
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVN 154 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 154 (253)
...||-...-.-|++.+++.+|++..+.-.++.-+++.|+.
T Consensus 71 paaPGP~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGlG 111 (277)
T COG1927 71 PAAPGPKKAREILSDSDVPAIIIGDAPGLKVKDELEEQGLG 111 (277)
T ss_pred CCCCCchHHHHHHhhcCCCEEEecCCccchhHHHHHhcCCe
Confidence 44567666666778889999999999988888888888875
No 338
>PRK13790 phosphoribosylamine--glycine ligase; Provisional
Probab=45.32 E-value=1.8e+02 Score=24.14 Aligned_cols=117 Identities=13% Similarity=0.112 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhh---hhhhhcCCCCCcceeEeeecc-ccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQD---VILPALGVNQGTEWDFGVFSG-LEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~---~~l~~~gl~~~~~f~~~~~~~-~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
+...+++.+++.++..+++.... .... ..++..|+.- +... ..-.---++...+.+++++| ++--..
T Consensus 15 d~~~l~~~~~~~~id~vi~g~E~-~l~~~~~d~l~~~Gi~~-------~g~s~~a~~l~~dK~~~k~~l~~~g-Iptp~~ 85 (379)
T PRK13790 15 DHQAILDFAKQQNVDWVVIGPEQ-PLIDGLADILRANGFKV-------FGPNKQAAQIEGSKLFAKKIMEKYN-IPTADY 85 (379)
T ss_pred CHHHHHHHHHHhCCCEEEECCcH-HHHHHHHHHHHhCCCcE-------ECCCHHHHHHhCCHHHHHHHHHHCC-CCCCCE
Confidence 45667777777777776654433 3322 2334445431 1111 11111234566778899999 887676
Q ss_pred EEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhhh
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSEI 250 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~~ 250 (253)
..+.|.. .-...+.+.|.+.+.=+..+.. ..+..++.|.+|+...+.+.+
T Consensus 86 ~~~~~~~-ea~~~~~~~g~PvVvKp~~~~~------gkGV~iv~~~~el~~a~~~~~ 135 (379)
T PRK13790 86 KEVERKK-DALTYIENCELPVVVKKDGLAA------GKGVIIADTIEAARSAIEIMY 135 (379)
T ss_pred EEECCHH-HHHHHHHhcCCCEEEEeCCCCC------CCCEEEECCHHHHHHHHHHHH
Confidence 6665544 3344556788887765532221 134578899999988877643
No 339
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=45.09 E-value=1.3e+02 Score=23.05 Aligned_cols=27 Identities=7% Similarity=0.124 Sum_probs=21.7
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhh
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQD 145 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 145 (253)
.+++++.+|++. +.++|||.+-....+
T Consensus 187 kIEeLi~eLk~~-yTIviVTHnmqQAaR 213 (253)
T COG1117 187 KIEELITELKKK-YTIVIVTHNMQQAAR 213 (253)
T ss_pred HHHHHHHHHHhc-cEEEEEeCCHHHHHH
Confidence 377999999966 999999998775443
No 340
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=45.06 E-value=1e+02 Score=22.83 Aligned_cols=88 Identities=11% Similarity=-0.060 Sum_probs=48.7
Q ss_pred HHHHHHHHcCCEEEEEeCC-CcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCC
Q 039449 121 PFLRWAREKGLIVGIISNA-EYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDS 199 (253)
Q Consensus 121 ~~l~~l~~~g~~~~i~s~~-~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~ 199 (253)
-+-..++..|++++-+-.+ +.+..-..++..+. +.+..|.......+.-.-+...+++.+ ..++-.++||-.
T Consensus 103 ~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~~p------d~v~lS~~~~~~~~~~~~~i~~l~~~~-~~~~v~i~vGG~ 175 (197)
T TIGR02370 103 IVVTMLRANGFDVIDLGRDVPIDTVVEKVKKEKP------LMLTGSALMTTTMYGQKDINDKLKEEG-YRDSVKFMVGGA 175 (197)
T ss_pred HHHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCC------CEEEEccccccCHHHHHHHHHHHHHcC-CCCCCEEEEECh
Confidence 3445577889998655333 22333333333322 444455544444443344444555555 555557888888
Q ss_pred cccchhhhhhcCCeEEE
Q 039449 200 FRKDYVPAKSVGMHALL 216 (253)
Q Consensus 200 ~~~Di~~a~~~G~~~i~ 216 (253)
. -.-.-+++.|...-.
T Consensus 176 ~-~~~~~~~~~gad~~~ 191 (197)
T TIGR02370 176 P-VTQDWADKIGADVYG 191 (197)
T ss_pred h-cCHHHHHHhCCcEEe
Confidence 8 455678888876543
No 341
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=44.32 E-value=1e+02 Score=21.23 Aligned_cols=91 Identities=18% Similarity=0.059 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCEEEEEeCCCc-chhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcC
Q 039449 120 QPFLRWAREKGLIVGIISNAEY-RYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGD 198 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~-~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD 198 (253)
.-+...|+..|++++.+-...+ +..-......+. +.+..|...+...+...-+...++..+ .+ +-.+++|-
T Consensus 21 ~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~------d~V~lS~~~~~~~~~~~~~~~~L~~~~-~~-~~~i~vGG 92 (137)
T PRK02261 21 KILDRALTEAGFEVINLGVMTSQEEFIDAAIETDA------DAILVSSLYGHGEIDCRGLREKCIEAG-LG-DILLYVGG 92 (137)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCC------CEEEEcCccccCHHHHHHHHHHHHhcC-CC-CCeEEEEC
Confidence 3344567788999855543322 222233333322 344555555544333333334444444 32 33466666
Q ss_pred Cc-------ccchhhhhhcCCeEEEEc
Q 039449 199 SF-------RKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 199 ~~-------~~Di~~a~~~G~~~i~~~ 218 (253)
+. .-|...+++.|+..++-.
T Consensus 93 ~~~~~~~~~~~~~~~l~~~G~~~vf~~ 119 (137)
T PRK02261 93 NLVVGKHDFEEVEKKFKEMGFDRVFPP 119 (137)
T ss_pred CCCCCccChHHHHHHHHHcCCCEEECc
Confidence 54 135568899998777754
No 342
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=44.25 E-value=2.8e+02 Score=26.83 Aligned_cols=70 Identities=16% Similarity=0.203 Sum_probs=46.4
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhhh
Q 039449 173 PDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSEI 250 (253)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~~ 250 (253)
-++..+++.++.+| ++--....+.+-. .-...+++.|.+++.=+..+.. ..+..++.+-+|+...+.+.+
T Consensus 126 ~DK~~~k~~l~~~G-ipvp~~~~v~s~~-e~~~~~~~igyPvIVKP~~g~g------g~Gv~iv~~~eeL~~~~~~~~ 195 (1050)
T TIGR01369 126 EDRELFREAMKEIG-EPVPESEIAHSVE-EALAAAKEIGYPVIVRPAFTLG------GTGGGIAYNREELKEIAERAL 195 (1050)
T ss_pred CCHHHHHHHHHHCC-CCCCCeeecCCHH-HHHHHHHHhCCCeEEECCCCCC------CCCeEEECCHHHHHHHHHHHH
Confidence 34566777888899 8877777775544 2345677889988765533322 134468889999887766543
No 343
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=43.73 E-value=1.2e+02 Score=23.60 Aligned_cols=71 Identities=20% Similarity=0.144 Sum_probs=46.4
Q ss_pred CCEEEEEeCCCcchh---hhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhh
Q 039449 130 GLIVGIISNAEYRYQ---DVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVP 206 (253)
Q Consensus 130 g~~~~i~s~~~~~~~---~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~ 206 (253)
-+.|+++|.++...- -.-+++.||+- ....+... ..| . .-++-++ ++ +|..-+. .|+..
T Consensus 36 ~VEVVllSRNspdTGlRv~nSI~hygL~I----tR~~ft~G---~~~--~---~Yl~af~-v~----LFLSan~-~DV~~ 97 (264)
T PF06189_consen 36 LVEVVLLSRNSPDTGLRVFNSIRHYGLDI----TRAAFTGG---ESP--Y---PYLKAFN-VD----LFLSANE-DDVQE 97 (264)
T ss_pred ceEEEEEecCCHHHHHHHHHhHHHhCCcc----eeeeecCC---CCH--H---HHHHHhC-Cc----eEeeCCH-HHHHH
Confidence 478899998877653 33455667653 22222211 111 1 2355566 55 8998999 79999
Q ss_pred hhhcCCeEEEEc
Q 039449 207 AKSVGMHALLVD 218 (253)
Q Consensus 207 a~~~G~~~i~~~ 218 (253)
|..+|+.+..+.
T Consensus 98 Ai~~G~~Aa~v~ 109 (264)
T PF06189_consen 98 AIDAGIPAATVL 109 (264)
T ss_pred HHHcCCCcEEee
Confidence 999999998876
No 344
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=43.64 E-value=23 Score=21.11 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=15.7
Q ss_pred HHHHHHHHHhCCCCCCceEEEcCCc
Q 039449 176 RIYEIALERAGNIAPEEALHIGDSF 200 (253)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~iGD~~ 200 (253)
.++..++++.| +...+++.|||-.
T Consensus 43 ~Gv~~~L~~~G-~~~GD~V~Ig~~e 66 (69)
T PF09269_consen 43 MGVEKALRKAG-AKEGDTVRIGDYE 66 (69)
T ss_dssp TTHHHHHHTTT---TT-EEEETTEE
T ss_pred CCHHHHHHHcC-CCCCCEEEEcCEE
Confidence 34556777888 9999999999854
No 345
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=43.61 E-value=16 Score=22.14 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=13.6
Q ss_pred ceEEEEecCCceeccCC
Q 039449 7 LRCITVDVTGTLLAYKG 23 (253)
Q Consensus 7 ~k~i~fD~DGTL~~~~~ 23 (253)
.-.|+++-|||.+++..
T Consensus 38 ~~~l~L~eDGT~VddEe 54 (74)
T smart00266 38 PVTLVLEEDGTIVDDEE 54 (74)
T ss_pred CcEEEEecCCcEEccHH
Confidence 34688999999998653
No 346
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=43.13 E-value=17 Score=22.46 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=13.9
Q ss_pred ceEEEEecCCceeccCC
Q 039449 7 LRCITVDVTGTLLAYKG 23 (253)
Q Consensus 7 ~k~i~fD~DGTL~~~~~ 23 (253)
.-.|+++-|||.+++..
T Consensus 39 ~~~lvLeeDGT~Vd~Ee 55 (81)
T cd06537 39 VLTLVLEEDGTAVDSED 55 (81)
T ss_pred ceEEEEecCCCEEccHH
Confidence 35799999999998653
No 347
>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH. The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH
Probab=42.98 E-value=33 Score=27.57 Aligned_cols=29 Identities=17% Similarity=0.151 Sum_probs=25.6
Q ss_pred CccCCChHHHHHHHHHcCCEEEEEeCCCc
Q 039449 113 YTVFPDSQPFLRWAREKGLIVGIISNAEY 141 (253)
Q Consensus 113 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~ 141 (253)
..+.|++.++++.+++.|..+.+.||+..
T Consensus 83 PLL~pdl~eiv~~~~~~g~~v~l~TNG~l 111 (318)
T TIGR03470 83 PLLHPEIDEIVRGLVARKKFVYLCTNALL 111 (318)
T ss_pred ccccccHHHHHHHHHHcCCeEEEecCcee
Confidence 35678999999999999999999999975
No 348
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=42.94 E-value=17 Score=22.28 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=13.7
Q ss_pred ceEEEEecCCceeccCC
Q 039449 7 LRCITVDVTGTLLAYKG 23 (253)
Q Consensus 7 ~k~i~fD~DGTL~~~~~ 23 (253)
.-.++++-|||.+++..
T Consensus 40 ~~~lvL~eDGT~Vd~Ee 56 (78)
T cd06539 40 LVTLVLEEDGTVVDTEE 56 (78)
T ss_pred CcEEEEeCCCCEEccHH
Confidence 35689999999998653
No 349
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=42.76 E-value=3.3e+02 Score=26.46 Aligned_cols=68 Identities=12% Similarity=0.189 Sum_probs=45.6
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhh
Q 039449 174 DPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~ 249 (253)
++..+++.++.+| ++--....+.+.. .-...+.+.|.+.|.=+..+.. ..+..++.+.+|+..++.+.
T Consensus 128 DK~~~k~~l~~~G-ipvp~~~~v~s~~-e~~~~~~~ig~PvVVKP~~g~g------g~Gv~iv~~~eeL~~a~~~~ 195 (1066)
T PRK05294 128 DRELFKEAMKKIG-LPVPRSGIAHSME-EALEVAEEIGYPVIIRPSFTLG------GTGGGIAYNEEELEEIVERG 195 (1066)
T ss_pred CHHHHHHHHHHCC-cCCCCeeeeCCHH-HHHHHHHHcCCCeEEEcCCCCC------CCCeEEECCHHHHHHHHHHH
Confidence 5566778889999 8877777775433 2235677889988766532222 13456888999988877643
No 350
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=42.46 E-value=1.4e+02 Score=24.40 Aligned_cols=65 Identities=25% Similarity=0.239 Sum_probs=38.1
Q ss_pred HHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCC--cccCCHHHHHHHHhhhh
Q 039449 176 RIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGA--IVLPDLVAVKEFLTSEI 250 (253)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~--~~i~~l~el~~~l~~~~ 250 (253)
.-|..+++... ++||||- .=++.|-..|.+++-+...+.. ++....+. .+-.+-+++...+.+..
T Consensus 250 ~~~l~ll~~a~-------~vvgdSs-GI~eEa~~lg~P~v~iR~~geR--qe~r~~~~nvlv~~~~~~I~~ai~~~l 316 (346)
T PF02350_consen 250 EEYLSLLKNAD-------LVVGDSS-GIQEEAPSLGKPVVNIRDSGER--QEGRERGSNVLVGTDPEAIIQAIEKAL 316 (346)
T ss_dssp HHHHHHHHHES-------EEEESSH-HHHHHGGGGT--EEECSSS-S---HHHHHTTSEEEETSSHHHHHHHHHHHH
T ss_pred HHHHHHHhcce-------EEEEcCc-cHHHHHHHhCCeEEEecCCCCC--HHHHhhcceEEeCCCHHHHHHHHHHHH
Confidence 34555666655 8899998 3443999999999999533433 22222232 33356777777776544
No 351
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=42.19 E-value=1.6e+02 Score=22.69 Aligned_cols=96 Identities=21% Similarity=0.247 Sum_probs=59.7
Q ss_pred CCccCCChHHHHHH---HHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecccc--CccCCCHHHHHHHHHHhC
Q 039449 112 PYTVFPDSQPFLRW---AREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLE--GVEKPDPRIYEIALERAG 186 (253)
Q Consensus 112 ~~~~~~~~~~~l~~---l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~--~~~kp~~~~~~~~~~~~~ 186 (253)
+-.++|+..++++. |.+.|+.|.-.++.+....+ .|...|-.. ..-...-. +.+-.++..++.++++.+
T Consensus 102 ~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~ak-rL~d~Gcaa-----vMPlgsPIGSg~Gi~n~~~l~~i~~~~~ 175 (247)
T PF05690_consen 102 DKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAK-RLEDAGCAA-----VMPLGSPIGSGRGIQNPYNLRIIIERAD 175 (247)
T ss_dssp TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHH-HHHHTT-SE-----BEEBSSSTTT---SSTHHHHHHHHHHGS
T ss_pred CCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHH-HHHHCCCCE-----EEecccccccCcCCCCHHHHHHHHHhcC
Confidence 34667887777755 56789999999999887666 455666543 11122223 233567799999999987
Q ss_pred CCCCCceEEEcC---CcccchhhhhhcCCeEEEEcC
Q 039449 187 NIAPEEALHIGD---SFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 187 ~~~~~~~~~iGD---~~~~Di~~a~~~G~~~i~~~~ 219 (253)
++ ++|+- ++ +|...|-+.|+..|+++.
T Consensus 176 -vP----vIvDAGiG~p-Sdaa~AMElG~daVLvNT 205 (247)
T PF05690_consen 176 -VP----VIVDAGIGTP-SDAAQAMELGADAVLVNT 205 (247)
T ss_dssp -SS----BEEES---SH-HHHHHHHHTT-SEEEESH
T ss_pred -Cc----EEEeCCCCCH-HHHHHHHHcCCceeehhh
Confidence 65 44433 45 899999999999999993
No 352
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=41.83 E-value=1.7e+02 Score=22.96 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=10.8
Q ss_pred HHHHHHHHcCCEEEEEeCC
Q 039449 121 PFLRWAREKGLIVGIISNA 139 (253)
Q Consensus 121 ~~l~~l~~~g~~~~i~s~~ 139 (253)
...+.+++.|+++..+++.
T Consensus 44 ~~~~~i~~~g~~v~~~~~~ 62 (279)
T TIGR03590 44 DLIDLLLSAGFPVYELPDE 62 (279)
T ss_pred HHHHHHHHcCCeEEEecCC
Confidence 3455566666666665543
No 353
>PRK08185 hypothetical protein; Provisional
Probab=41.67 E-value=62 Score=25.62 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEE--c
Q 039449 120 QPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHI--G 197 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~i--G 197 (253)
.++|+..++.||-+..+.-.+.+.++.+++...-...+.+-.+......-.+.+-..+...+.++.. ++ =+++. |
T Consensus 2 ~~~L~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~-vP--V~lHLDHg 78 (283)
T PRK08185 2 KELLKVAKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSP-VP--FVIHLDHG 78 (283)
T ss_pred HHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCC-CC--EEEECCCC
Confidence 4677777777788777777777666666654322220011110000000001112233344455544 43 33444 2
Q ss_pred CCcccchhhhhhcCCeEEEEcCCC
Q 039449 198 DSFRKDYVPAKSVGMHALLVDRFK 221 (253)
Q Consensus 198 D~~~~Di~~a~~~G~~~i~~~~~~ 221 (253)
.++ .++..|.++|+.+|+++...
T Consensus 79 ~~~-e~i~~ai~~Gf~SVM~D~S~ 101 (283)
T PRK08185 79 ATI-EDVMRAIRCGFTSVMIDGSL 101 (283)
T ss_pred CCH-HHHHHHHHcCCCEEEEeCCC
Confidence 233 46777888898888888544
No 354
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=41.52 E-value=56 Score=21.75 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=23.0
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhhh
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQDV 146 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~ 146 (253)
...+.++.++++|.+++++|+........
T Consensus 68 ~~~~~~~~ak~~g~~vi~iT~~~~~~l~~ 96 (131)
T PF01380_consen 68 ELIELLRFAKERGAPVILITSNSESPLAR 96 (131)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSTTSHHHH
T ss_pred hhhhhhHHHHhcCCeEEEEeCCCCCchhh
Confidence 46678888999999999999887655443
No 355
>PRK06856 DNA polymerase III subunit psi; Validated
Probab=40.92 E-value=1.2e+02 Score=20.80 Aligned_cols=64 Identities=11% Similarity=0.200 Sum_probs=39.8
Q ss_pred HHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEE
Q 039449 125 WAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHI 196 (253)
Q Consensus 125 ~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~i 196 (253)
.|.+.|+..+.+.+...-.-+ ....+.. ...-++++++.. ...++ .+..+++.++ +++++|.++
T Consensus 7 ~LqemGItqW~Lr~P~~L~g~---~~i~lp~--~~rLliV~~~~~-~~~~~-L~~dVLrsl~-L~~~q~~~l 70 (128)
T PRK06856 7 LLQQLGITQWVLRRPGVLQGE---IAISLPE--HIRLVIVAEELP-ALTDP-LLQDVLRSLT-LSPDQVLCL 70 (128)
T ss_pred HHHHcCCceEEecCccccCCC---ccccCCc--cceEEEEeCCCC-cccCh-HHHHHHHHcC-CCHHHeeee
Confidence 467778887777766542211 1223333 344455555543 22233 8999999999 999999987
No 356
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=40.69 E-value=1.3e+02 Score=23.78 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChh
Q 039449 175 PRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAK 226 (253)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~ 226 (253)
..-+..+.++.| . ....| |+. .||....-.|..+|.+. .|.+.++
T Consensus 227 s~rL~eiA~~~g-~---~aylI-d~~-~ei~~~w~~~~~~VGvT-AGAStPd 271 (294)
T COG0761 227 SNRLAEIAKRHG-K---PAYLI-DDA-EEIDPEWLKGVKTVGVT-AGASTPD 271 (294)
T ss_pred HHHHHHHHHHhC-C---CeEEe-CCh-HhCCHHHhcCccEEEEe-cCCCCCH
Confidence 356667788888 4 56677 555 48999888899999998 4544433
No 357
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=40.68 E-value=1.2e+02 Score=20.96 Aligned_cols=116 Identities=17% Similarity=0.153 Sum_probs=53.1
Q ss_pred HHHHHHHHcCCEE-EEEeCCCcc--hhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEE--
Q 039449 121 PFLRWAREKGLIV-GIISNAEYR--YQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALH-- 195 (253)
Q Consensus 121 ~~l~~l~~~g~~~-~i~s~~~~~--~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~-- 195 (253)
.+++.+..+|+.+ .++|-++.. .....++++.-++ ....+...-+. -.+++.|..++++.. .. +.+++
T Consensus 16 ~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~--~t~~I~ly~E~---~~d~~~f~~~~~~a~-~~-KPVv~lk 88 (138)
T PF13607_consen 16 AILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDP--DTRVIVLYLEG---IGDGRRFLEAARRAA-RR-KPVVVLK 88 (138)
T ss_dssp HHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-S--S--EEEEEES-----S-HHHHHHHHHHHC-CC-S-EEEEE
T ss_pred HHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCC--CCCEEEEEccC---CCCHHHHHHHHHHHh-cC-CCEEEEe
Confidence 4667777777655 344433332 2556788887766 44443333332 223688888888887 55 44333
Q ss_pred EcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHh
Q 039449 196 IGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLT 247 (253)
Q Consensus 196 iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~ 247 (253)
.|-+. .. ++.+--++--+.+....-...+.+.+.+++++++||.+..+
T Consensus 89 ~Grt~-~g---~~aa~sHTgslag~~~~~~a~~~~aGv~~v~~~~el~~~~~ 136 (138)
T PF13607_consen 89 AGRTE-AG---ARAAASHTGSLAGDDAVYDAALRQAGVVRVDDLDELLDAAK 136 (138)
T ss_dssp -------------------------HHHHHHHHHHCTEEEESSHHHHHHHHC
T ss_pred CCCch-hh---hhhhhccCCcccCcHHHHHHHHHHcCceEECCHHHHHHHHH
Confidence 34333 12 11111111111111111234556678899999999988754
No 358
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=40.12 E-value=35 Score=23.10 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=14.1
Q ss_pred ccCceEEEEecCCceec
Q 039449 4 LSRLRCITVDVTGTLLA 20 (253)
Q Consensus 4 ~~~~k~i~fD~DGTL~~ 20 (253)
.+.+..+.||+.+||-.
T Consensus 42 ~~~P~iV~FDmK~Tld~ 58 (128)
T PRK13717 42 LNAPVTAAFNMKQTVDA 58 (128)
T ss_pred cCCCeEEEEehHHHHHH
Confidence 35689999999999865
No 359
>PRK06524 biotin carboxylase-like protein; Validated
Probab=39.95 E-value=2e+02 Score=24.98 Aligned_cols=112 Identities=11% Similarity=0.101 Sum_probs=63.4
Q ss_pred HHHHHHHHcC--CEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccC-ccCCCHHHHHHHHHHhCCCCCCceEEE-
Q 039449 121 PFLRWAREKG--LIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEG-VEKPDPRIYEIALERAGNIAPEEALHI- 196 (253)
Q Consensus 121 ~~l~~l~~~g--~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~-~~kp~~~~~~~~~~~~~~~~~~~~~~i- 196 (253)
++++.++++| -+.+.++-... +..+++.+|+.- +.++... ...-++...+.+++.+| ++--....+
T Consensus 95 ~~~~~~~~~~~~~~~~fl~~DG~--iQ~lLE~lGIpy-------~gP~a~asai~mDK~~tK~l~~~aG-IPtpp~~~~~ 164 (493)
T PRK06524 95 ETLEFIKRRGPGGKACFVMFDEE--TEALARQAGLEV-------MHPPAELRHRLDSKIVTTRLANEAG-VPSVPHVLGR 164 (493)
T ss_pred HHHHHHHhhCCCCceEEecCCHH--HHHHHHHCCCeE-------ECcCHHHHHHhCCHHHHHHHHHHcC-CCCCCccccc
Confidence 4455555553 35556665443 556788888863 2332221 12345567778889999 865554442
Q ss_pred cCCcccchh-hhhh--cCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhh
Q 039449 197 GDSFRKDYV-PAKS--VGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 197 GD~~~~Di~-~a~~--~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~ 249 (253)
-++. .++. .+.. .|.+++.=+..+.. ..+...+.+-+|+..++...
T Consensus 165 ~~~~-eel~~~~~~~~IGyPvVVKP~~GGS------S~GV~~Vkn~eELe~a~~~~ 213 (493)
T PRK06524 165 VDSY-DELSALAHGAGLGDDLVVQTPYGDS------GSTTFFVRGQRDWDKYAGGI 213 (493)
T ss_pred CCCH-HHHHHHHHhccCCCcEEEEECCCCC------CcCEEEeCCHHHHHHHHHHh
Confidence 2333 2333 2333 78887765533322 23456888888888776653
No 360
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=39.80 E-value=37 Score=28.83 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=29.8
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCC
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYRYQDVILPALGV 153 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl 153 (253)
+..+++.++++|+-++++|.++....+.++.++|-
T Consensus 279 ieqvvrLIRSKGVGv~fvTQ~P~DiP~~VL~QLGn 313 (502)
T PF05872_consen 279 IEQVVRLIRSKGVGVYFVTQNPTDIPDDVLGQLGN 313 (502)
T ss_pred HHHHHHHhhccCceEEEEeCCCCCCCHHHHHhhhh
Confidence 44556778999999999999999999999988874
No 361
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=39.77 E-value=1.4e+02 Score=24.19 Aligned_cols=103 Identities=15% Similarity=0.109 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccC-----CCHHHHHHHHHHhCCCCCCc
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEK-----PDPRIYEIALERAGNIAPEE 192 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~k-----p~~~~~~~~~~~~~~~~~~~ 192 (253)
...++|+..++.||-+..+.-.+.+.++.+++...-...+.+-.+. ........ .-...+....++.+ ++-.=
T Consensus 11 ~~k~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s-~~~~~~~g~~~~~~~~~~~~~~a~~a~-~~VPV 88 (321)
T PRK07084 11 NTREMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVS-KGARKYANATLLRYMAQGAVEYAKELG-CPIPI 88 (321)
T ss_pred CHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEec-hhHHhhCCchHHHHHHHHHHHHHHHcC-CCCcE
Confidence 4678888888888888888777777777666544322211111111 11111111 11112233344443 23233
Q ss_pred eEEE--cCCcccchhhhhhcCCeEEEEcCCCCC
Q 039449 193 ALHI--GDSFRKDYVPAKSVGMHALLVDRFKTP 223 (253)
Q Consensus 193 ~~~i--GD~~~~Di~~a~~~G~~~i~~~~~~~~ 223 (253)
+++. |.+. ..+..|.++|+.+|+++.+..+
T Consensus 89 ~lHLDHg~~~-e~i~~ai~~GftSVMiD~S~lp 120 (321)
T PRK07084 89 VLHLDHGDSF-ELCKDCIDSGFSSVMIDGSHLP 120 (321)
T ss_pred EEECCCCCCH-HHHHHHHHcCCCEEEeeCCCCC
Confidence 4444 3345 4667788889999999965443
No 362
>PF13382 Adenine_deam_C: Adenine deaminase C-terminal domain; PDB: 3T8L_B 3T81_A 3NQB_A.
Probab=39.72 E-value=40 Score=24.37 Aligned_cols=64 Identities=16% Similarity=0.072 Sum_probs=32.7
Q ss_pred HHhCCCCCCceEEEcCCcccchhhhhhc----CCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhh
Q 039449 183 ERAGNIAPEEALHIGDSFRKDYVPAKSV----GMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTS 248 (253)
Q Consensus 183 ~~~~~~~~~~~~~iGD~~~~Di~~a~~~----G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~ 248 (253)
.... -+.+++++||++. .|+..|-+. |-..+.+.....-..=.++-.+-..-.+.+|+.+.+++
T Consensus 59 sS~a-hDshniiviG~~~-~dm~~A~n~l~~~gGG~vvv~~g~v~a~lpLpi~GlmS~~~~eev~~~~~~ 126 (171)
T PF13382_consen 59 SSVA-HDSHNIIVIGTND-EDMALAANRLIEMGGGIVVVDDGEVLAELPLPIAGLMSDLPAEEVARQLEE 126 (171)
T ss_dssp ES---TTT--EEEEESSH-HHHHHHHHHHHHTTSEEEEEETTEEEEEEE-TBTTTBBSS-HHHHHHHHHH
T ss_pred EEcc-cCCCCEEEEECCH-HHHHHHHHHHHHhCCCEEEEECCEEEEEEeccccceecCCCHHHHHHHHHH
Confidence 3444 6788999999999 798877654 66777765211111111122233444456665555443
No 363
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=39.54 E-value=20 Score=26.18 Aligned_cols=14 Identities=29% Similarity=0.472 Sum_probs=12.1
Q ss_pred eEEEEecCCceecc
Q 039449 8 RCITVDVTGTLLAY 21 (253)
Q Consensus 8 k~i~fD~DGTL~~~ 21 (253)
..|-||+|||++--
T Consensus 59 ~~v~~D~~GT~m~i 72 (271)
T PF06901_consen 59 HTVTFDFQGTKMVI 72 (271)
T ss_pred eeEEEeccceEEEe
Confidence 58999999999863
No 364
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=39.37 E-value=3.7e+02 Score=26.13 Aligned_cols=118 Identities=12% Similarity=0.182 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCEEEEEeCCCc-------------------chhhhhhhhcCCCCCcceeEeeeccccCcc---------
Q 039449 120 QPFLRWAREKGLIVGIISNAEY-------------------RYQDVILPALGVNQGTEWDFGVFSGLEGVE--------- 171 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~-------------------~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~--------- 171 (253)
..+++.|++.|++++++..++. +.+..+++..+++. +.....+..
T Consensus 31 ~q~~~aL~e~G~~vi~v~~np~~~~~d~~~ad~~y~ep~~~e~l~~ii~~e~~D~-------Iip~~gg~~~l~~a~~l~ 103 (1068)
T PRK12815 31 TQACLALKEEGYQVVLVNPNPATIMTDPAPADTVYFEPLTVEFVKRIIAREKPDA-------LLATLGGQTALNLAVKLH 103 (1068)
T ss_pred HHHHHHHHHcCCEEEEEeCCcchhhcCcccCCeeEECCCCHHHHHHHHHHhCcCE-------EEECCCCchHHHHHHHHH
Q ss_pred ----------------------CCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhh
Q 039449 172 ----------------------KPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWR 229 (253)
Q Consensus 172 ----------------------kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~ 229 (253)
.-+...++.+++++| ++--....+.+.. .-...+...|.+.+.-+..+..
T Consensus 104 ~~g~Le~~gv~l~g~~~~~i~~~~DK~~~k~~l~~~G-Ipvp~~~~v~s~e-e~~~~~~~igyPvVVKP~~g~g------ 175 (1068)
T PRK12815 104 EDGILEQYGVELLGTNIEAIQKGEDRERFRALMKELG-EPVPESEIVTSVE-EALAFAEKIGFPIIVRPAYTLG------ 175 (1068)
T ss_pred hcCHHHHCCCEEECCCHHHHHHhcCHHHHHHHHHHcC-cCCCCceeeCCHH-HHHHHHHHcCCCEEEEECcCCC------
Q ss_pred hcCCcccCCHHHHHHHHhhhhhc
Q 039449 230 KSGAIVLPDLVAVKEFLTSEISA 252 (253)
Q Consensus 230 ~~~~~~i~~l~el~~~l~~~~~~ 252 (253)
..+..++.+.+||..++.+.+..
T Consensus 176 G~Gv~iv~~~eEL~~a~~~~~~~ 198 (1068)
T PRK12815 176 GTGGGIAENLEELEQLFKQGLQA 198 (1068)
T ss_pred CCceEEECCHHHHHHHHHHHHhc
No 365
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=39.06 E-value=31 Score=24.16 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.3
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCc
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEY 141 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~ 141 (253)
+.+.++++.+++.|+++.+.||...
T Consensus 75 ~~l~~ll~~lk~~Gl~i~l~Tg~~~ 99 (147)
T TIGR02826 75 EALLSLLKIFKEKGLKTCLYTGLEP 99 (147)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC
Confidence 4677999999999999999998655
No 366
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=38.43 E-value=22 Score=21.87 Aligned_cols=16 Identities=13% Similarity=0.175 Sum_probs=13.1
Q ss_pred eEEEEecCCceeccCC
Q 039449 8 RCITVDVTGTLLAYKG 23 (253)
Q Consensus 8 k~i~fD~DGTL~~~~~ 23 (253)
-.|+++-|||.++++.
T Consensus 41 ~~lvL~eDGTeVddEe 56 (78)
T cd01615 41 VTLVLEEDGTEVDDEE 56 (78)
T ss_pred eEEEEeCCCcEEccHH
Confidence 4589999999998653
No 367
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=38.08 E-value=39 Score=20.15 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=18.4
Q ss_pred HHHHHHHHhCCCCCCceEEEcCCc
Q 039449 177 IYEIALERAGNIAPEEALHIGDSF 200 (253)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~iGD~~ 200 (253)
++..++++.| +.+.+.+.|||-.
T Consensus 44 Gv~~~L~~~G-~~~GD~V~Ig~~e 66 (69)
T TIGR03595 44 GVEDALRKAG-AKDGDTVRIGDFE 66 (69)
T ss_pred CHHHHHHHcC-CCCCCEEEEccEE
Confidence 4556788888 9999999999853
No 368
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=37.85 E-value=85 Score=24.88 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=36.3
Q ss_pred ccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhh------hcCCeEEEEcC
Q 039449 170 VEKPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAK------SVGMHALLVDR 219 (253)
Q Consensus 170 ~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~------~~G~~~i~~~~ 219 (253)
..-|.++.|.+++..+| |+.+.++++=|.. +...+++ .+|..-|.+..
T Consensus 70 ~~lp~~e~fa~~~~~~G-I~~d~tVVvYdd~-~~~~A~ra~W~l~~~Gh~~V~iLd 123 (285)
T COG2897 70 HMLPSPEQFAKLLGELG-IRNDDTVVVYDDG-GGFFAARAWWLLRYLGHENVRILD 123 (285)
T ss_pred CCCCCHHHHHHHHHHcC-CCCCCEEEEECCC-CCeehHHHHHHHHHcCCCceEEec
Confidence 44789999999999999 9887766665555 5665554 45998887764
No 369
>PRK10671 copA copper exporting ATPase; Provisional
Probab=37.09 E-value=21 Score=33.02 Aligned_cols=20 Identities=40% Similarity=0.365 Sum_probs=16.9
Q ss_pred ccCceEEEEecCCceeccCC
Q 039449 4 LSRLRCITVDVTGTLLAYKG 23 (253)
Q Consensus 4 ~~~~k~i~fD~DGTL~~~~~ 23 (253)
+.++++|+||..|||+....
T Consensus 514 l~~v~~v~fDKTGTLT~g~~ 533 (834)
T PRK10671 514 ASTLDTLVFDKTGTLTEGKP 533 (834)
T ss_pred hcCCCEEEEcCCCccccCce
Confidence 45689999999999998654
No 370
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=37.03 E-value=48 Score=23.84 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=23.8
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhh
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDV 146 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~ 146 (253)
+.+.+.++.++++|.+++.+|+.....+..
T Consensus 86 ~~~i~~~~~ak~~g~~ii~IT~~~~s~la~ 115 (179)
T TIGR03127 86 ESLVTVAKKAKEIGATVAAITTNPESTLGK 115 (179)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCchHH
Confidence 446788888999999999999987765443
No 371
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=36.95 E-value=51 Score=25.25 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=23.9
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcchhhhhhh
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYRYQDVILP 149 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~ 149 (253)
+.|.+.+|++.|.++.++|.+...+-...++
T Consensus 37 IVEqV~~L~~~G~evilVSSGaVA~G~qrLr 67 (285)
T KOG1154|consen 37 IVEQVSELQRMGREVILVSSGAVAFGRQRLR 67 (285)
T ss_pred HHHHHHHHHhcCceEEEEecchhhhhHHHhh
Confidence 4578889999999999999997655444443
No 372
>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein. This model has the same scope as an archaeal COG (arCOG00187) and is found in all completely sequenced archaea and does not recognize any known non-archaeal genes.
Probab=36.77 E-value=1.8e+02 Score=21.88 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=16.8
Q ss_pred CceEEEcCCcccch------hhhhhcCCeEEEEc
Q 039449 191 EEALHIGDSFRKDY------VPAKSVGMHALLVD 218 (253)
Q Consensus 191 ~~~~~iGD~~~~Di------~~a~~~G~~~i~~~ 218 (253)
-+.++.||.. .|. ..+..+|+....-.
T Consensus 87 ~~~vv~G~i~-sd~~~~~~e~v~~~~gl~~~~PL 119 (218)
T TIGR03679 87 VEGIVTGAIA-SRYQKSRIERICEELGLKVFAPL 119 (218)
T ss_pred CCEEEECCcc-cHhHHHHHHHHHHhCCCeEEeeh
Confidence 3578888887 454 44556666655544
No 373
>COG0253 DapF Diaminopimelate epimerase [Amino acid transport and metabolism]
Probab=36.68 E-value=65 Score=25.31 Aligned_cols=46 Identities=20% Similarity=0.370 Sum_probs=34.8
Q ss_pred hhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHh-CCCCCCceEEEcC
Q 039449 148 LPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERA-GNIAPEEALHIGD 198 (253)
Q Consensus 148 l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~-~~~~~~~~~~iGD 198 (253)
.+..|+.+ ++++.-.........|+...+++.+. | +..+.+++|.+
T Consensus 4 ~KmhG~GN----dfivvd~~~~~~~~~~~~a~~l~~r~~g-iGaDgvl~i~~ 50 (272)
T COG0253 4 SKMHGLGN----DFIVVDEFDKKDEETPELARALCDRHFG-IGADGVLFVEP 50 (272)
T ss_pred EEEcCCCC----cEEEEeccccccccCHHHHHHHHhcccC-cCCceEEEEec
Confidence 45566665 66666555555567889999999998 7 99999999994
No 374
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=36.61 E-value=15 Score=22.22 Aligned_cols=9 Identities=44% Similarity=0.733 Sum_probs=8.3
Q ss_pred EEecCCcee
Q 039449 11 TVDVTGTLL 19 (253)
Q Consensus 11 ~fD~DGTL~ 19 (253)
=||++|.|+
T Consensus 4 RFdf~G~l~ 12 (73)
T PF08620_consen 4 RFDFDGNLL 12 (73)
T ss_pred cccCCCCEe
Confidence 499999999
No 375
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=36.60 E-value=1.8e+02 Score=23.05 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCC---HHHHHHHHHHhCCCCCCceE
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPD---PRIYEIALERAGNIAPEEAL 194 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~---~~~~~~~~~~~~~~~~~~~~ 194 (253)
...++|+..++.||-+..+.-.+.+.++.+++...-.+.+.+-. ++.......+. ..+...++++.. ++ =++
T Consensus 5 ~~~~~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq--~~~~~~~~~g~~~~~~~~~~~a~~~~-VP--Val 79 (284)
T PRK12737 5 STKNMLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILA--GTPGTFSYAGTDYIVAIAEVAARKYN-IP--LAL 79 (284)
T ss_pred cHHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEE--cCccHHhhCCHHHHHHHHHHHHHHCC-CC--EEE
Confidence 35678888888888888887777777776665443222001111 11111111111 123444555555 53 344
Q ss_pred EEcCCcc--cchhhhhhcCCeEEEEcCCCCC
Q 039449 195 HIGDSFR--KDYVPAKSVGMHALLVDRFKTP 223 (253)
Q Consensus 195 ~iGD~~~--~Di~~a~~~G~~~i~~~~~~~~ 223 (253)
+. |+-. ..+..|.++|+.+|+++.+..+
T Consensus 80 HL-DH~~~~e~i~~ai~~GftSVMiDgS~lp 109 (284)
T PRK12737 80 HL-DHHEDLDDIKKKVRAGIRSVMIDGSHLS 109 (284)
T ss_pred EC-CCCCCHHHHHHHHHcCCCeEEecCCCCC
Confidence 44 4331 4677888889999999965433
No 376
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=36.08 E-value=2.1e+02 Score=22.26 Aligned_cols=77 Identities=17% Similarity=0.173 Sum_probs=46.4
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhC---CCCCCceEE
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAG---NIAPEEALH 195 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~---~~~~~~~~~ 195 (253)
++.++.+....|++++=++...-..+..+++.+.-. ...+++++++..-.. ....|+.+..-+. .-.|+++++
T Consensus 69 Vkall~~y~~~GLRlIev~k~~L~~l~~l~~~l~~~---~~kFIlf~DDLsFe~-~d~~yk~LKs~LeGgle~~P~Nvli 144 (249)
T PF05673_consen 69 VKALLNEYADQGLRLIEVSKEDLGDLPELLDLLRDR---PYKFILFCDDLSFEE-GDTEYKALKSVLEGGLEARPDNVLI 144 (249)
T ss_pred HHHHHHHHhhcCceEEEECHHHhccHHHHHHHHhcC---CCCEEEEecCCCCCC-CcHHHHHHHHHhcCccccCCCcEEE
Confidence 667778888888888888888777777777776533 246667777654332 2233333333332 134566665
Q ss_pred EcCC
Q 039449 196 IGDS 199 (253)
Q Consensus 196 iGD~ 199 (253)
.--|
T Consensus 145 yATS 148 (249)
T PF05673_consen 145 YATS 148 (249)
T ss_pred EEec
Confidence 5433
No 377
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=35.90 E-value=24 Score=21.76 Aligned_cols=16 Identities=13% Similarity=0.246 Sum_probs=13.2
Q ss_pred eEEEEecCCceeccCC
Q 039449 8 RCITVDVTGTLLAYKG 23 (253)
Q Consensus 8 k~i~fD~DGTL~~~~~ 23 (253)
-.|+++-|||.+++..
T Consensus 43 ~~lvL~eDGT~VddEe 58 (80)
T cd06536 43 ITLVLAEDGTIVEDED 58 (80)
T ss_pred eEEEEecCCcEEccHH
Confidence 5688999999998653
No 378
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=35.86 E-value=1.2e+02 Score=19.61 Aligned_cols=91 Identities=11% Similarity=0.067 Sum_probs=47.6
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
.+...-.+....+++.|++++ .+... -...++..++.. .+.++....... .--.....++.++ +...+
T Consensus 25 vvid~d~~~~~~~~~~~~~~i--~gd~~--~~~~l~~a~i~~---a~~vv~~~~~d~---~n~~~~~~~r~~~--~~~~i 92 (116)
T PF02254_consen 25 VVIDRDPERVEELREEGVEVI--YGDAT--DPEVLERAGIEK---ADAVVILTDDDE---ENLLIALLARELN--PDIRI 92 (116)
T ss_dssp EEEESSHHHHHHHHHTTSEEE--ES-TT--SHHHHHHTTGGC---ESEEEEESSSHH---HHHHHHHHHHHHT--TTSEE
T ss_pred EEEECCcHHHHHHHhcccccc--cccch--hhhHHhhcCccc---cCEEEEccCCHH---HHHHHHHHHHHHC--CCCeE
Confidence 344445566777777776532 22222 124566777765 233333222110 0112223455554 23567
Q ss_pred EEEcCCcccchhhhhhcCCeEEEE
Q 039449 194 LHIGDSFRKDYVPAKSVGMHALLV 217 (253)
Q Consensus 194 ~~iGD~~~~Di~~a~~~G~~~i~~ 217 (253)
+..-++. .....++++|+..+..
T Consensus 93 i~~~~~~-~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 93 IARVNDP-ENAELLRQAGADHVIS 115 (116)
T ss_dssp EEEESSH-HHHHHHHHTT-SEEEE
T ss_pred EEEECCH-HHHHHHHHCCcCEEEC
Confidence 7777777 6888889999988764
No 379
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=35.85 E-value=9.9 Score=32.49 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=19.0
Q ss_pred ceEEEEecCCceeccCCCHHHHHHHHH
Q 039449 7 LRCITVDVTGTLLAYKGELGDYYCMAA 33 (253)
Q Consensus 7 ~k~i~fD~DGTL~~~~~~~~~~~~~~~ 33 (253)
.+++++|+||||+.+.+..+-.+.-++
T Consensus 50 ~~t~v~d~~g~Ll~s~s~FpyfmlvA~ 76 (525)
T PLN02588 50 NHTLIFNVEGALLKSNSLFPYFMVVAF 76 (525)
T ss_pred cceEEEecccceeccCCCCcceeeeee
Confidence 467999999999997765444433333
No 380
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=35.85 E-value=68 Score=21.02 Aligned_cols=34 Identities=9% Similarity=-0.063 Sum_probs=26.2
Q ss_pred HHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC
Q 039449 121 PFLRWAREKGLIVGIISNAEYRYQDVILPALGVN 154 (253)
Q Consensus 121 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 154 (253)
+...++.+.|+++++|+-++.+.++...+..+.+
T Consensus 4 ~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p 37 (115)
T PF13911_consen 4 RRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFP 37 (115)
T ss_pred HhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCC
Confidence 4456788899999999999986677777665554
No 381
>COG4275 Uncharacterized conserved protein [Function unknown]
Probab=35.83 E-value=29 Score=23.42 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=28.8
Q ss_pred ceEEEEecCCceeccCCCHHHHHHHHHHHcCCCCCCHHHHHH
Q 039449 7 LRCITVDVTGTLLAYKGELGDYYCMAAKSVGLPCPDYKRVHE 48 (253)
Q Consensus 7 ~k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 48 (253)
..++=||+||+-+..... .-.+..+++++|+..+...++..
T Consensus 45 fgAvpfdi~gv~~th~~e-~~sFd~~l~~fgLd~paL~~la~ 85 (143)
T COG4275 45 FGAVPFDIDGVELTHVGE-RCSFDTMLAKFGLDGPALARLAA 85 (143)
T ss_pred cCCcceeecceeEEeeee-eecHHHHHHHhCCCcHHHHHHHH
Confidence 578899999998875442 23456678899998765555443
No 382
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=34.97 E-value=1.5e+02 Score=20.31 Aligned_cols=88 Identities=14% Similarity=0.088 Sum_probs=42.9
Q ss_pred HHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcC-Cccc
Q 039449 124 RWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGD-SFRK 202 (253)
Q Consensus 124 ~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD-~~~~ 202 (253)
..|+..|++|+- ++.. ...+...+..--. --+.+..|...+...+.-..+...++..+ .+ .-.+++|- -+..
T Consensus 24 ~~l~~~GfeVi~-lg~~-~s~e~~v~aa~e~---~adii~iSsl~~~~~~~~~~~~~~L~~~g-~~-~i~vivGG~~~~~ 96 (132)
T TIGR00640 24 TAYADLGFDVDV-GPLF-QTPEEIARQAVEA---DVHVVGVSSLAGGHLTLVPALRKELDKLG-RP-DILVVVGGVIPPQ 96 (132)
T ss_pred HHHHhCCcEEEE-CCCC-CCHHHHHHHHHHc---CCCEEEEcCchhhhHHHHHHHHHHHHhcC-CC-CCEEEEeCCCChH
Confidence 446667887633 2222 2222222222111 12334445544433333333334444444 42 34577774 3324
Q ss_pred chhhhhhcCCeEEEEc
Q 039449 203 DYVPAKSVGMHALLVD 218 (253)
Q Consensus 203 Di~~a~~~G~~~i~~~ 218 (253)
|....+++|+..++-.
T Consensus 97 ~~~~l~~~Gvd~~~~~ 112 (132)
T TIGR00640 97 DFDELKEMGVAEIFGP 112 (132)
T ss_pred hHHHHHHCCCCEEECC
Confidence 6888899999887754
No 383
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=34.92 E-value=55 Score=25.47 Aligned_cols=28 Identities=11% Similarity=0.265 Sum_probs=24.0
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCc
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEY 141 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~ 141 (253)
.-+|+..+++++|+++|+++++..+...
T Consensus 63 ~~Fpdp~~~i~~l~~~g~~~~~~~~P~v 90 (265)
T cd06589 63 GKFPNPKSMIDELHDNGVKLVLWIDPYI 90 (265)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEeChhH
Confidence 4579999999999999999988877654
No 384
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=34.90 E-value=1.7e+02 Score=25.83 Aligned_cols=19 Identities=21% Similarity=0.111 Sum_probs=10.5
Q ss_pred HHHHHHHHHhCCCCCCceE
Q 039449 176 RIYEIALERAGNIAPEEAL 194 (253)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~ 194 (253)
.+-..+...+++++|+.++
T Consensus 175 ~GKl~Ly~a~aGI~P~~~l 193 (559)
T PTZ00317 175 IGKLSLYVAGGGINPSRVL 193 (559)
T ss_pred ccHHHHHHhhcCCChhhcc
Confidence 3334444555448877654
No 385
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=34.43 E-value=53 Score=23.64 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=22.8
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcch
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRY 143 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~ 143 (253)
+.+.+.++.++++|.+++.+|+.....
T Consensus 115 ~~~i~~~~~ak~~Ga~vI~IT~~~~s~ 141 (177)
T cd05006 115 PNVLKALEAAKERGMKTIALTGRDGGK 141 (177)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCCc
Confidence 567888999999999999999986544
No 386
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=34.25 E-value=1.9e+02 Score=21.40 Aligned_cols=52 Identities=12% Similarity=0.153 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHhCCCCCCc-eEEEcCCcccc-----hhhhhhcCCeEEEEcCCCCCChhh
Q 039449 174 DPRIYEIALERAGNIAPEE-ALHIGDSFRKD-----YVPAKSVGMHALLVDRFKTPDAKE 227 (253)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~-~~~iGD~~~~D-----i~~a~~~G~~~i~~~~~~~~~~~~ 227 (253)
-.+.|.+-++.+. ++.+ +++|..+-.+. ++.|++.|+++|.+++........
T Consensus 95 ~~~~f~~ql~~~~--~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~IT~~~~s~l~~ 152 (196)
T PRK10886 95 HDEVYAKQVRALG--HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAG 152 (196)
T ss_pred HHHHHHHHHHHcC--CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhh
Confidence 3456666666654 4445 44455443222 567888899999999655444443
No 387
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=34.23 E-value=43 Score=21.65 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=27.4
Q ss_pred HHHHHhCCCCCCceEEE-cCCcccchhhhhhcCCeEEEEcCCCCC
Q 039449 180 IALERAGNIAPEEALHI-GDSFRKDYVPAKSVGMHALLVDRFKTP 223 (253)
Q Consensus 180 ~~~~~~~~~~~~~~~~i-GD~~~~Di~~a~~~G~~~i~~~~~~~~ 223 (253)
.+++.+. ++.++.+ ||+. .=+..|..+|+.++.+.+...+
T Consensus 33 ~~~~~~~---~~~lvIt~gdR~-di~~~a~~~~i~~iIltg~~~~ 73 (105)
T PF07085_consen 33 DFLEYLK---PGDLVITPGDRE-DIQLAAIEAGIACIILTGGLEP 73 (105)
T ss_dssp HHHHCHH---TTEEEEEETT-H-HHHHHHCCTTECEEEEETT---
T ss_pred HHHhhcC---CCeEEEEeCCcH-HHHHHHHHhCCCEEEEeCCCCC
Confidence 3444443 4688888 9998 6788999999999988853333
No 388
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=34.00 E-value=1.4e+02 Score=22.34 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=47.5
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEc-
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIG- 197 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iG- 197 (253)
+.+.++.+++.|+++++=--+.....-..+..+..+- ..++..++.... ........+..+.+... -..-.+++=|
T Consensus 134 ~~~~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~~~d~-iKld~~~~~~~~-~~~~~~~~l~~l~~~~~-~~~~~via~gV 210 (240)
T cd01948 134 ALATLRRLRALGVRIALDDFGTGYSSLSYLKRLPVDY-LKIDRSFVRDIE-TDPEDRAIVRAIIALAH-SLGLKVVAEGV 210 (240)
T ss_pred HHHHHHHHHHCCCeEEEeCCCCcHhhHHHHHhCCCCE-EEECHHHHHhHh-cChhhHHHHHHHHHHHH-HCCCeEEEEec
Confidence 6788999999999997632222222222344333221 111111111111 11112333443333332 1123567767
Q ss_pred CCcccchhhhhhcCCeEEE
Q 039449 198 DSFRKDYVPAKSVGMHALL 216 (253)
Q Consensus 198 D~~~~Di~~a~~~G~~~i~ 216 (253)
++. .+...+++.|+..+-
T Consensus 211 e~~-~~~~~~~~~gi~~~Q 228 (240)
T cd01948 211 ETE-EQLELLRELGCDYVQ 228 (240)
T ss_pred CCH-HHHHHHHHcCCCeee
Confidence 777 799999999997653
No 389
>PLN02257 phosphoribosylamine--glycine ligase
Probab=33.97 E-value=3e+02 Score=23.44 Aligned_cols=115 Identities=15% Similarity=0.073 Sum_probs=65.1
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchh---hhhhhhcCCCCCcceeEeeecccc-CccCCCHHHHHHHHHHhCCCCCCce
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQ---DVILPALGVNQGTEWDFGVFSGLE-GVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~---~~~l~~~gl~~~~~f~~~~~~~~~-~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
+...+++.+++.++.+++++. ....+ ...++..|+.- +.++.. -.--.++...+.+++++| ++--..
T Consensus 50 d~~~l~~~a~~~~id~vvvg~-E~~lv~~~~d~l~~~Gi~~-------~Gps~~aa~l~~dK~~~K~~l~~~G-Iptp~~ 120 (434)
T PLN02257 50 DSAAVISFCRKWGVGLVVVGP-EAPLVAGLADDLVKAGIPT-------FGPSAEAAALEGSKNFMKDLCDKYK-IPTAKY 120 (434)
T ss_pred CHHHHHHHHHHcCCCEEEECC-chHHHHHHHHHHHHCCCCE-------ECChHHHHHHHcCHHHHHHHHHHcC-CCCCCe
Confidence 455677777777777766553 22222 22334445431 111111 111234567778899999 887666
Q ss_pred EEEcCCcccch-hhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhh
Q 039449 194 LHIGDSFRKDY-VPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 194 ~~iGD~~~~Di-~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~ 249 (253)
..+.| . .++ ..+...|.+.|.=...+.. ..+..++.+.+|+.+.+...
T Consensus 121 ~~~~~-~-~e~~~~~~~~g~PvVVKp~~~~~------GkGV~iv~~~~el~~a~~~~ 169 (434)
T PLN02257 121 ETFTD-P-AAAKKYIKEQGAPIVVKADGLAA------GKGVVVAMTLEEAYEAVDSM 169 (434)
T ss_pred EEeCC-H-HHHHHHHHHcCCCEEEEcCCCCC------CCCEEEECCHHHHHHHHHHH
Confidence 66644 4 344 3455678877655432211 23557889999988777653
No 390
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=33.94 E-value=71 Score=21.34 Aligned_cols=28 Identities=18% Similarity=0.148 Sum_probs=22.3
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhh
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQD 145 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 145 (253)
.+.+.++.++++|.+++++|+.......
T Consensus 75 ~~~~~~~~a~~~g~~iv~iT~~~~~~l~ 102 (139)
T cd05013 75 ETVEAAEIAKERGAKVIAITDSANSPLA 102 (139)
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCCChhH
Confidence 4667888899999999999998764433
No 391
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=33.90 E-value=19 Score=19.36 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=20.8
Q ss_pred HHHHHHHHHcCCEEEEEeCCCcchhhhhhh
Q 039449 120 QPFLRWAREKGLIVGIISNAEYRYQDVILP 149 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~ 149 (253)
.++...|++.|++.+=||...+......|.
T Consensus 9 ~eL~~~L~~~G~~~gPIt~sTR~vy~kkL~ 38 (44)
T smart00540 9 AELRAELKQYGLPPGPITDTTRKLYEKKLR 38 (44)
T ss_pred HHHHHHHHHcCCCCCCcCcchHHHHHHHHH
Confidence 367777888888887777777665554444
No 392
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=33.88 E-value=1.1e+02 Score=25.44 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=53.0
Q ss_pred CCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEE
Q 039449 116 FPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALH 195 (253)
Q Consensus 116 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~ 195 (253)
.|++..++..+.+- +++++.|......+..++..++-.. .|...++-... .. +.+. |.+-+...+ .+...+++
T Consensus 254 Rp~l~~fl~~ls~~-~~l~~ft~s~~~y~~~v~d~l~~~k--~~~~~lfr~sc-~~-~~G~-~ikDis~i~-r~l~~vii 326 (390)
T COG5190 254 RPELDYFLGKLSKI-HELVYFTASVKRYADPVLDILDSDK--VFSHRLFRESC-VS-YLGV-YIKDISKIG-RSLDKVII 326 (390)
T ss_pred ChHHHHHHhhhhhh-EEEEEEecchhhhcchHHHhccccc--eeehhhhcccc-ee-ccCc-hhhhHHhhc-cCCCceEE
Confidence 46777777777766 8999999998888888777776554 33332222221 11 1122 333566677 78889999
Q ss_pred EcCCcccc
Q 039449 196 IGDSFRKD 203 (253)
Q Consensus 196 iGD~~~~D 203 (253)
|.+++.+.
T Consensus 327 Id~~p~SY 334 (390)
T COG5190 327 IDNSPASY 334 (390)
T ss_pred eeCChhhh
Confidence 99999433
No 393
>cd06538 CIDE_N_FSP27 CIDE_N domain of FSP27 proteins. The CIDE-N (cell death-inducing DFF45-like effector, N-terminal) domain is found in the FSP27/CIDE-C protein, which has been identified as a n adipocyte lipid droplet protein that negatively regulates lipolysis and promotes triglyceride accumulation. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. The CIDE-N domain of FSP27 is sufficient to increase apoptosis in vitro when overexpressed.
Probab=33.72 E-value=28 Score=21.46 Aligned_cols=16 Identities=19% Similarity=0.252 Sum_probs=13.1
Q ss_pred eEEEEecCCceeccCC
Q 039449 8 RCITVDVTGTLLAYKG 23 (253)
Q Consensus 8 k~i~fD~DGTL~~~~~ 23 (253)
-.|+++-|||.++++.
T Consensus 40 ~~lvL~eDGT~Vd~Ee 55 (79)
T cd06538 40 SSLVLDEDGTGVDTEE 55 (79)
T ss_pred cEEEEecCCcEEccHH
Confidence 4589999999998653
No 394
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=33.56 E-value=94 Score=23.52 Aligned_cols=52 Identities=12% Similarity=0.024 Sum_probs=28.6
Q ss_pred HHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcC--CcccCCHHHHHHHHhhhh
Q 039449 181 ALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSG--AIVLPDLVAVKEFLTSEI 250 (253)
Q Consensus 181 ~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~--~~~i~~l~el~~~l~~~~ 250 (253)
+++.+.+...+++.||||... +|-++.+.+.... -+.|.++++....+++++
T Consensus 166 ~Lr~l~~~~~~~I~FfGDkt~------------------pGGNDyei~~~~rt~g~~V~~p~DT~~~l~~l~ 219 (220)
T PF03332_consen 166 CLRHLEDEGFDEIHFFGDKTF------------------PGGNDYEIFEDPRTIGHTVTSPEDTIKQLKELF 219 (220)
T ss_dssp GGGGTTTTT-SEEEEEESS-S------------------TTSTTHHHHHSTTSEEEE-SSHHHHHHHHHHHH
T ss_pred HHHHHHhcccceEEEEehhcc------------------CCCCCceeeecCCccEEEeCCHHHHHHHHHHHh
Confidence 444554123689999999874 4444444433222 256777777777776654
No 395
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=33.37 E-value=2e+02 Score=21.81 Aligned_cols=38 Identities=18% Similarity=0.215 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 173 PDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
.++.-+...+.... ++||.+. +-...|...|++++.+.
T Consensus 246 ~~~~~~~~~~~~~~-------~~Is~Rl-H~~I~a~~~g~P~i~i~ 283 (286)
T PF04230_consen 246 LSPDELLELISQAD-------LVISMRL-HGAILALSLGVPVIAIS 283 (286)
T ss_pred CCHHHHHHHHhcCC-------EEEecCC-HHHHHHHHcCCCEEEEe
Confidence 44555656666555 9999999 79999999999999987
No 396
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=33.31 E-value=58 Score=24.87 Aligned_cols=23 Identities=9% Similarity=0.071 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCCEEEEEeCCCcc
Q 039449 120 QPFLRWAREKGLIVGIISNAEYR 142 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~~ 142 (253)
...++++.+.|++++++.++...
T Consensus 34 a~~i~~~~~~g~eV~iVvGGGni 56 (238)
T COG0528 34 ANEIKELVDLGVEVAVVVGGGNI 56 (238)
T ss_pred HHHHHHHHhcCcEEEEEECCCHH
Confidence 35566777789999999988653
No 397
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=33.13 E-value=2.4e+02 Score=22.10 Aligned_cols=99 Identities=8% Similarity=0.080 Sum_probs=50.7
Q ss_pred cCCChHHHHHHHHHcCCEEEEEeCCCc--chhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCc
Q 039449 115 VFPDSQPFLRWAREKGLIVGIISNAEY--RYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEE 192 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 192 (253)
+.+...++++.+++.|+..+.+-+-.+ +.++.+.+.. .. +...+-..+..|....-+..+...+++.. -.-+.
T Consensus 129 P~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a--~g--FIY~vS~~GvTG~~~~~~~~~~~~i~~ir-~~t~~ 203 (263)
T CHL00200 129 PYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAA--PG--CIYLVSTTGVTGLKTELDKKLKKLIETIK-KMTNK 203 (263)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhC--CC--cEEEEcCCCCCCCCccccHHHHHHHHHHH-HhcCC
Confidence 446677888899998877655544443 2333333332 11 22221222333433222344445554443 22233
Q ss_pred eEEEcCCc--ccchhhhhhcCCeEEEEc
Q 039449 193 ALHIGDSF--RKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 193 ~~~iGD~~--~~Di~~a~~~G~~~i~~~ 218 (253)
-+.||=+. ..++..+..+|...+.+-
T Consensus 204 Pi~vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 204 PIILGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred CEEEECCcCCHHHHHHHHhcCCCEEEEC
Confidence 45555544 136666777888888775
No 398
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=32.95 E-value=3.1e+02 Score=23.32 Aligned_cols=82 Identities=11% Similarity=0.075 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCEEEEEeCCCc---------chhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCC
Q 039449 120 QPFLRWAREKGLIVGIISNAEY---------RYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAP 190 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~---------~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~ 190 (253)
.++++.|.++|+++++++.... .....+.+.+.-.. ...+.... .++.-+..++..+.
T Consensus 263 a~~i~~Li~~g~~Vv~lp~~~~~~~~~~dD~~~~~~l~~~~~~~~----~~~vi~~~-----~~~~e~~~iIs~~d---- 329 (426)
T PRK10017 263 AGVVNRIIDEGYQVIALSTCTGIDSYNKDDRMVALNLRQHVSDPA----RYHVVMDE-----LNDLEMGKILGACE---- 329 (426)
T ss_pred HHHHHHHHHCCCeEEEEecccCccCCCCchHHHHHHHHHhccccc----ceeEecCC-----CChHHHHHHHhhCC----
Confidence 3667777778999999985411 11233334443111 11111111 12334446666666
Q ss_pred CceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 191 EEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 191 ~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
++||=+. +-...|-.+|.+++.+.
T Consensus 330 ---l~ig~Rl-Ha~I~a~~~gvP~i~i~ 353 (426)
T PRK10017 330 ---LTVGTRL-HSAIISMNFGTPAIAIN 353 (426)
T ss_pred ---EEEEecc-hHHHHHHHcCCCEEEee
Confidence 8999999 68899999999999998
No 399
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=32.90 E-value=42 Score=25.31 Aligned_cols=26 Identities=19% Similarity=0.332 Sum_probs=20.0
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcchhh
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYRYQD 145 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~~~~ 145 (253)
+.++|..|++. +.|++||+++-..+.
T Consensus 1 M~~~L~~L~~~-~~vgvVgGsd~~k~~ 26 (220)
T PF03332_consen 1 MAELLQKLRKK-VPVGVVGGSDLPKIQ 26 (220)
T ss_dssp HHHHHHHHHTT-SEEEEEESS-HHHHH
T ss_pred CHHHHHHHHhc-CeEEEEcchhHHHHH
Confidence 35788999876 999999999876543
No 400
>PRK13937 phosphoheptose isomerase; Provisional
Probab=32.87 E-value=59 Score=23.76 Aligned_cols=29 Identities=21% Similarity=0.142 Sum_probs=23.5
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhh
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQD 145 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 145 (253)
+.+.+.++.++++|.+++.+|+.....+.
T Consensus 120 ~~~~~~~~~ak~~g~~~I~iT~~~~s~L~ 148 (188)
T PRK13937 120 PNVLAALEKARELGMKTIGLTGRDGGKMK 148 (188)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCChhH
Confidence 56778889999999999999997665433
No 401
>PHA03050 glutaredoxin; Provisional
Probab=32.83 E-value=1.4e+02 Score=19.51 Aligned_cols=73 Identities=14% Similarity=0.135 Sum_probs=37.7
Q ss_pred HHHHHHHHcCCEEEEEeCCCcch---hhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEc
Q 039449 121 PFLRWAREKGLIVGIISNAEYRY---QDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIG 197 (253)
Q Consensus 121 ~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iG 197 (253)
++++.+-+. .++.++|-..-.+ +...++..|+... .|..+ +.....+.++....+.+.-| ...=-.++||
T Consensus 4 ~~v~~~i~~-~~V~vys~~~CPyC~~ak~~L~~~~i~~~-~~~~i----~i~~~~~~~~~~~~l~~~tG-~~tVP~IfI~ 76 (108)
T PHA03050 4 EFVQQRLAN-NKVTIFVKFTCPFCRNALDILNKFSFKRG-AYEIV----DIKEFKPENELRDYFEQITG-GRTVPRIFFG 76 (108)
T ss_pred HHHHHHhcc-CCEEEEECCCChHHHHHHHHHHHcCCCcC-CcEEE----ECCCCCCCHHHHHHHHHHcC-CCCcCEEEEC
Confidence 455555544 4677777665544 6677788887530 11111 11122234454545444445 4333466777
Q ss_pred CCc
Q 039449 198 DSF 200 (253)
Q Consensus 198 D~~ 200 (253)
+..
T Consensus 77 g~~ 79 (108)
T PHA03050 77 KTS 79 (108)
T ss_pred CEE
Confidence 643
No 402
>PRK02186 argininosuccinate lyase; Provisional
Probab=32.56 E-value=3.6e+02 Score=25.50 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCc--chhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEE
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEY--RYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALH 195 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~--~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~ 195 (253)
+...+++.+++...-.+++|+.+. ..+..+.+.+|+.. ...... ..--++..++..++..| ++.-....
T Consensus 57 d~~~l~~~~~~~~~i~~V~~~se~~v~~aa~lae~lglpg-------~~~ea~-~~~~dK~~~r~~L~~~G-Ip~P~~~~ 127 (887)
T PRK02186 57 DPDRIHRFVSSLDGVAGIMSSSEYFIEVASEVARRLGLPA-------ANTEAI-RTCRDKKRLARTLRDHG-IDVPRTHA 127 (887)
T ss_pred CHHHHHHHHHhcCCCCEEEeCchhhHHHHHHHHHHhCcCC-------CCHHHH-HHhcCHHHHHHHHHHcC-CCCCCEEE
Confidence 344555555554222356665542 33445666777764 111111 11234567778899999 88777777
Q ss_pred EcCCcccchh-hhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhh
Q 039449 196 IGDSFRKDYV-PAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 196 iGD~~~~Di~-~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~ 249 (253)
+.+ . .|+. .+...|.++|.=+..+.. ..+...+.|.+|+...+...
T Consensus 128 v~~-~-~e~~~~~~~~~~PvVVKP~~g~g------S~GV~~v~~~~el~~a~~~~ 174 (887)
T PRK02186 128 LAL-R-AVALDALDGLTYPVVVKPRMGSG------SVGVRLCASVAEAAAHCAAL 174 (887)
T ss_pred eCC-H-HHHHHHHHhCCCCEEEEeCCCCC------CCCeEEECCHHHHHHHHHHH
Confidence 754 4 3554 356778887766533322 12456888999988877654
No 403
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=32.26 E-value=2.4e+02 Score=21.95 Aligned_cols=67 Identities=19% Similarity=0.144 Sum_probs=49.6
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEcCCcc-------cchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHH
Q 039449 174 DPRIYEIALERAGNIAPEEALHIGDSFR-------KDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFL 246 (253)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~iGD~~~-------~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l 246 (253)
..+.+...++..+ ++ +.|+-+.+ |-+..|+..|++.+-+.|+..... ....+.++|++|+.+.+
T Consensus 54 ~~e~l~~~l~e~~-i~----llIDATHPyAa~iS~Na~~aake~gipy~r~eRP~~~~~----gd~~~~V~d~~ea~~~~ 124 (257)
T COG2099 54 GAEGLAAFLREEG-ID----LLIDATHPYAARISQNAARAAKETGIPYLRLERPPWAPN----GDNWIEVADIEEAAEAA 124 (257)
T ss_pred CHHHHHHHHHHcC-CC----EEEECCChHHHHHHHHHHHHHHHhCCcEEEEECCccccC----CCceEEecCHHHHHHHH
Confidence 4578888899988 64 77766542 678889999999999886443321 23447899999999988
Q ss_pred hhh
Q 039449 247 TSE 249 (253)
Q Consensus 247 ~~~ 249 (253)
.+.
T Consensus 125 ~~~ 127 (257)
T COG2099 125 KQL 127 (257)
T ss_pred hcc
Confidence 764
No 404
>PF13535 ATP-grasp_4: ATP-grasp domain; PDB: 3VMM_A 3LN6_A 3LN7_B 2PN1_A 4DIM_A.
Probab=32.25 E-value=1.8e+02 Score=20.52 Aligned_cols=67 Identities=12% Similarity=0.118 Sum_probs=43.0
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEcCCcccchh-hhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhh
Q 039449 174 DPRIYEIALERAGNIAPEEALHIGDSFRKDYV-PAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~-~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~ 249 (253)
++..+..++++.| ++--+.+.+.+.. ++. .+...|.+.|.=+..+.. ..+...+++.+++...+...
T Consensus 4 dK~~~~~~~~~~g-v~~P~~~~~~~~~--~~~~~~~~~~~p~vvKp~~g~g------s~gv~~~~~~~~l~~~~~~~ 71 (184)
T PF13535_consen 4 DKYRMRELLKKAG-VPVPKTRIVDSEE--ELRAFAEDLGFPFVVKPVDGSG------SRGVFIVHSPEELEAALAEI 71 (184)
T ss_dssp CHHHHHHHHHHHT-S----EEEECSHH--HHHHHHHHSSSSEEEEESS-ST------TTT-EEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC-cCCCCEEEECCHH--HHHHHHHHcCCCEEEEcCcccc------CCCEEEeCCHHHHHHHHHHH
Confidence 4567788999999 8877778886654 455 457778777665543322 23557899999998887654
No 405
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=32.21 E-value=1.2e+02 Score=29.57 Aligned_cols=85 Identities=15% Similarity=0.060 Sum_probs=57.9
Q ss_pred HHHHHHHHcCCEEEEEeCCCcch--hhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcC
Q 039449 121 PFLRWAREKGLIVGIISNAEYRY--QDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGD 198 (253)
Q Consensus 121 ~~l~~l~~~g~~~~i~s~~~~~~--~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD 198 (253)
-+|++|+..|.++.|+|.-..-. ++.+|.++|.. |+ ...+. .+.+--+.++++++ .++.-..||=-
T Consensus 1267 iLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgyl---Y~---RLDg~-----t~vEqRQaLmerFN-aD~RIfcfILS 1334 (1958)
T KOG0391|consen 1267 ILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYL---YV---RLDGN-----TSVEQRQALMERFN-ADRRIFCFILS 1334 (1958)
T ss_pred HHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceE---EE---EecCC-----ccHHHHHHHHHHhc-CCCceEEEEEe
Confidence 45889999999999999876632 44555555443 11 11111 22355567899999 88888888877
Q ss_pred CcccchhhhhhcCCeEE-EEc
Q 039449 199 SFRKDYVPAKSVGMHAL-LVD 218 (253)
Q Consensus 199 ~~~~Di~~a~~~G~~~i-~~~ 218 (253)
+. +.=.+.+-.|..+| +++
T Consensus 1335 Tr-SggvGiNLtgADTVvFYD 1354 (1958)
T KOG0391|consen 1335 TR-SGGVGINLTGADTVVFYD 1354 (1958)
T ss_pred cc-CCccccccccCceEEEec
Confidence 77 67777788888885 555
No 406
>PF03603 DNA_III_psi: DNA polymerase III psi subunit; InterPro: IPR004615 DNA-directed DNA polymerase (2.7.7.7 from EC) catalyzes DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The enzyme also has 3' to 5' exonuclease activity. It has a core composed of alpha, epsilon and theta chains, that associate with a tau subunit which allows the core dimerization to form the PolIII' complex. PolIII' associates with the gamma complex (gamma, delta, delta', psi and chi chains) and with the beta chain. This family is the psi subunit, the small subunit of the DNA polymerase III holoenzyme in Escherichia coli and related species, whose exact function is not known. It appears to have a narrow taxonomic distribution, being restricted to the gammaproteobacteria.; GO: 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication; PDB: 1EM8_B 3GLI_O 3SXU_B.
Probab=32.13 E-value=1.4e+02 Score=20.42 Aligned_cols=106 Identities=13% Similarity=0.099 Sum_probs=48.2
Q ss_pred HHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccc
Q 039449 124 RWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKD 203 (253)
Q Consensus 124 ~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~D 203 (253)
..|.+.|+..+-+.....-.- .....+.. ...-+++++.... ...+ .|..+++.++ ++++++.++- + ..
T Consensus 7 ~~LqeMGItqW~Lr~P~~L~g---~~~i~lp~--~~rLliVs~~~p~-~~~~-L~~dVLrsl~-L~~~q~~~lt--p-eq 75 (128)
T PF03603_consen 7 WLLQEMGITQWQLRRPEVLQG---EIAISLPE--SCRLLIVSDELPQ-LDDP-LFQDVLRSLK-LTPEQVLHLT--P-EQ 75 (128)
T ss_dssp HHHHHCT--EEEES-GGGTS-----S-----T--T--EEEE-SS----TTSH-HHHHHHHHTT---GGGEEEE---C-CG
T ss_pred HHHHHcCCCeEEeCCccccCC---CccccCcc--cceEEEEeCCCCC-ccCh-HHHHHHHHcC-CCHHHhhccC--H-HH
Confidence 357778888887776533111 11223333 4455555555532 2234 9999999999 9999999983 3 35
Q ss_pred hhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHH
Q 039449 204 YVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVK 243 (253)
Q Consensus 204 i~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~ 243 (253)
+.+...-...-+|..+...... .......-++|++|.
T Consensus 76 ~~~L~~~~~~~~W~lg~~~~~~---~~~~~l~Sp~L~~L~ 112 (128)
T PF03603_consen 76 LAMLPEDHPCWCWFLGCEQQEI---LAGKQLQSPSLSELD 112 (128)
T ss_dssp GGGS-TT-B-EEEEES--S--S---SBS-EEEE--HHHHH
T ss_pred HhhCcCCCCCcEEEccCCCccc---ccceeecCcCHHHHh
Confidence 6666555556677664222111 111235777787773
No 407
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=31.98 E-value=56 Score=21.66 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=19.8
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCC
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAE 140 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~ 140 (253)
+.+.+.++.++++|.+++.+|+..
T Consensus 57 ~e~i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 57 EETLSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 456778888899999999999754
No 408
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=31.91 E-value=2.6e+02 Score=22.28 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=53.3
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccC-CCHH----HHHHHHHHhCCCCCCc
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEK-PDPR----IYEIALERAGNIAPEE 192 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~k-p~~~----~~~~~~~~~~~~~~~~ 192 (253)
...++|+..++.||-+..+.-.+.+.++.+++...-.+.+.+ +-.......- ...+ +...+.++.+ .+-.=
T Consensus 5 ~~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvI---lq~~~~~~~~~~g~~~~~~~~~~~a~~~~-~~VPV 80 (288)
T TIGR00167 5 DVKELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVI---IQFSNGAAKYIAGLGAISAMVKAMSEAYP-YGVPV 80 (288)
T ss_pred cHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEE---EECCcchhhccCCHHHHHHHHHHHHHhcc-CCCcE
Confidence 456888888888888887777777776666654422220011 1111111110 1123 3333444442 22223
Q ss_pred eEEEcCCcc--cchhhhhhcCCeEEEEcCCCCC
Q 039449 193 ALHIGDSFR--KDYVPAKSVGMHALLVDRFKTP 223 (253)
Q Consensus 193 ~~~iGD~~~--~Di~~a~~~G~~~i~~~~~~~~ 223 (253)
+++. |+-. .++..|.++|+.+|+++++..+
T Consensus 81 ~lHL-DHg~~~e~i~~ai~~GftSVMiDgS~lp 112 (288)
T TIGR00167 81 ALHL-DHGASEEDCAQAVKAGFSSVMIDGSHEP 112 (288)
T ss_pred EEEC-CCCCCHHHHHHHHHcCCCEEEecCCCCC
Confidence 3443 4330 3566778889999999965433
No 409
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=31.58 E-value=1.8e+02 Score=23.88 Aligned_cols=30 Identities=17% Similarity=0.370 Sum_probs=23.6
Q ss_pred CCCCceEEEcCCcccc---hhhhhhcCCeEEEEc
Q 039449 188 IAPEEALHIGDSFRKD---YVPAKSVGMHALLVD 218 (253)
Q Consensus 188 ~~~~~~~~iGD~~~~D---i~~a~~~G~~~i~~~ 218 (253)
.+|+=+++.||+. .= ..+|...|++++++.
T Consensus 92 ~~Pd~vlv~GD~~-~~la~alaA~~~~IPv~Hve 124 (365)
T TIGR03568 92 LKPDLVVVLGDRF-EMLAAAIAAALLNIPIAHIH 124 (365)
T ss_pred hCCCEEEEeCCch-HHHHHHHHHHHhCCcEEEEE
Confidence 4588899999996 33 446677799999887
No 410
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=31.52 E-value=2.7e+02 Score=23.01 Aligned_cols=76 Identities=14% Similarity=0.010 Sum_probs=41.7
Q ss_pred HHHHHHHcCCEEEEEeCCCcc-------hhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceE
Q 039449 122 FLRWAREKGLIVGIISNAEYR-------YQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEAL 194 (253)
Q Consensus 122 ~l~~l~~~g~~~~i~s~~~~~-------~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 194 (253)
+-+.+++.|.++.|+|+.... .+...++..|++- ...+.. ...|.-+...++.+.+...+++-++
T Consensus 17 l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~-------~~~~~v-~~~p~~~~v~~~~~~~~~~~~D~Ii 88 (380)
T cd08185 17 LGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEV-------VVFDKV-EPNPTTTTVMEGAALAREEGCDFVV 88 (380)
T ss_pred HHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeE-------EEeCCc-cCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 334455556788899976541 1233344444432 111222 2356667777776666424567788
Q ss_pred EEcCCcccchh
Q 039449 195 HIGDSFRKDYV 205 (253)
Q Consensus 195 ~iGD~~~~Di~ 205 (253)
.||-+---|..
T Consensus 89 avGGGS~iD~a 99 (380)
T cd08185 89 GLGGGSSMDTA 99 (380)
T ss_pred EeCCccHHHHH
Confidence 89885434443
No 411
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=31.41 E-value=1.7e+02 Score=22.53 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=10.2
Q ss_pred CCChHHHHHHHHHcCCEEEE
Q 039449 116 FPDSQPFLRWAREKGLIVGI 135 (253)
Q Consensus 116 ~~~~~~~l~~l~~~g~~~~i 135 (253)
.+...++.+.|++.|..++.
T Consensus 12 ~~~~~~l~~~l~~~G~~~~~ 31 (255)
T PRK05752 12 AEECAALAASLAEAGIFSSS 31 (255)
T ss_pred HHHHHHHHHHHHHcCCCEEE
Confidence 34445555555555554443
No 412
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=31.28 E-value=1.9e+02 Score=22.60 Aligned_cols=14 Identities=0% Similarity=0.069 Sum_probs=8.5
Q ss_pred ccCCHHHHHHHHhh
Q 039449 235 VLPDLVAVKEFLTS 248 (253)
Q Consensus 235 ~i~~l~el~~~l~~ 248 (253)
.+.++.++.++++.
T Consensus 163 ~~~~~~~~~~ll~~ 176 (283)
T PRK13209 163 FMNSISKALGYAHY 176 (283)
T ss_pred ccCCHHHHHHHHHH
Confidence 44566666666654
No 413
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=31.25 E-value=89 Score=20.15 Aligned_cols=36 Identities=8% Similarity=-0.046 Sum_probs=26.9
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhh
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILP 149 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~ 149 (253)
.+.-|..++++.+++...++++++++........+.
T Consensus 16 kl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i~ 51 (99)
T PRK01018 16 KVILGSKRTIKAIKLGKAKLVIVASNCPKDIKEDIE 51 (99)
T ss_pred CEEEcHHHHHHHHHcCCceEEEEeCCCCHHHHHHHH
Confidence 566799999999998778888888876655544443
No 414
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=30.99 E-value=67 Score=23.15 Aligned_cols=29 Identities=14% Similarity=0.009 Sum_probs=23.3
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhh
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQD 145 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 145 (253)
+.+.+.++.++++|.+++.+|+.......
T Consensus 89 ~~~i~~~~~ak~~g~~iI~IT~~~~s~la 117 (179)
T cd05005 89 SSVVNAAEKAKKAGAKVVLITSNPDSPLA 117 (179)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence 45678888899999999999998765444
No 415
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=30.95 E-value=3.2e+02 Score=22.92 Aligned_cols=116 Identities=14% Similarity=0.115 Sum_probs=64.5
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcch---hhhhhhhcCCCCCcceeEeeeccc-cCccCCCHHHHHHHHHHhCCCCCCce
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRY---QDVILPALGVNQGTEWDFGVFSGL-EGVEKPDPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~gl~~~~~f~~~~~~~~-~~~~kp~~~~~~~~~~~~~~~~~~~~ 193 (253)
+...+++.+++.++.+++. +..... ....++.+|+.- +.... .-..--++...+.+++++| ++.-..
T Consensus 50 d~~~l~~~~~~~~id~vi~-~~e~~l~~~~~~~l~~~gi~~-------~g~~~~~~~~~~dK~~~k~~l~~~g-ip~p~~ 120 (420)
T PRK00885 50 DIEALVAFAKEEGIDLTVV-GPEAPLVAGIVDAFRAAGLPI-------FGPTKAAAQLEGSKAFAKDFMARYG-IPTAAY 120 (420)
T ss_pred CHHHHHHHHHHhCCCEEEE-CCchHHHHHHHHHHHHCCCcE-------ECcCHHHHHHHcCHHHHHHHHHHcC-CCCCCe
Confidence 5556677777776666553 333221 122444455531 11111 1111234567778899999 876676
Q ss_pred EEEcCCcccch-hhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhhh
Q 039449 194 LHIGDSFRKDY-VPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSEI 250 (253)
Q Consensus 194 ~~iGD~~~~Di-~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~~ 250 (253)
..+.+ . .++ ..+.+.|.+.|.=+..+.. ..+..++.|.+|+...+....
T Consensus 121 ~~~~~-~-~~~~~~~~~~~~P~VvKP~~~~g------s~Gv~~v~~~~el~~~~~~~~ 170 (420)
T PRK00885 121 ETFTD-A-EEALAYLDEKGAPIVVKADGLAA------GKGVVVAMTLEEAKAAVDDML 170 (420)
T ss_pred EEeCC-H-HHHHHHHHHcCCCEEEEeCCCCC------CCcEEEeCCHHHHHHHHHHHh
Confidence 66644 4 243 4456778887765532211 124568889999888776543
No 416
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=30.94 E-value=38 Score=22.28 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=28.5
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVN 154 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 154 (253)
...++..++++.|+.++.+|..+...+...++..++.
T Consensus 47 ~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~ 83 (124)
T PF00578_consen 47 ELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLP 83 (124)
T ss_dssp HHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCS
T ss_pred HHHHHhhhhccceEEeeecccccccchhhhhhhhccc
Confidence 3456666777778999999998888788888877744
No 417
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=30.92 E-value=55 Score=19.86 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=18.3
Q ss_pred CChHHHHHHHHHcCCEEEEEe
Q 039449 117 PDSQPFLRWAREKGLIVGIIS 137 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s 137 (253)
+.+.+.++.++++|.+++.+|
T Consensus 61 ~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 61 EELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 457788999999999999988
No 418
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.88 E-value=71 Score=25.34 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=22.5
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNA 139 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~ 139 (253)
.-+|+..+++++|+++|+++++...-
T Consensus 71 ~~FPdp~~mi~~Lh~~G~k~v~~v~P 96 (292)
T cd06595 71 KLFPDPEKLLQDLHDRGLKVTLNLHP 96 (292)
T ss_pred hcCCCHHHHHHHHHHCCCEEEEEeCC
Confidence 45799999999999999999877754
No 419
>PRK06100 DNA polymerase III subunit psi; Provisional
Probab=30.70 E-value=1.8e+02 Score=20.01 Aligned_cols=88 Identities=10% Similarity=0.080 Sum_probs=52.7
Q ss_pred HHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCcccc
Q 039449 124 RWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSFRKD 203 (253)
Q Consensus 124 ~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~D 203 (253)
.+|.+.|+.-+.+.+...-.-. ......+.. ...-++++++.. ...++-.+..+++.++ +++++|.++ ++ ..
T Consensus 7 ~~LqqMGItqW~Lr~P~~L~g~-e~~~i~lp~--~~rLliV~~~~p-~~~~~~L~~dVLrsm~-l~~~q~~~l--t~-eq 78 (132)
T PRK06100 7 QYLQEMGISQWELIHPERLAGY-QPPTQDLDS--DCKLLLVAPQCP-QNETALLFERILKSMQ-LELSQARHI--EP-EQ 78 (132)
T ss_pred HHHHHcCCceEEecCCccccCc-ccccccCCc--cceEEEEcCCCC-CccchHHHHHHHHHcC-CCHHHeeee--CH-HH
Confidence 4577778877777766531100 011122333 333444444432 3334458999999999 999999988 33 35
Q ss_pred hhhhhhcCCeEEEEcC
Q 039449 204 YVPAKSVGMHALLVDR 219 (253)
Q Consensus 204 i~~a~~~G~~~i~~~~ 219 (253)
+.+.-.-+...+|..+
T Consensus 79 ~~~L~~~~~~~~W~lg 94 (132)
T PRK06100 79 LSQLGYHSLEWVWFAG 94 (132)
T ss_pred HhhCCcCCCCeEEECC
Confidence 6666666777778774
No 420
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=30.64 E-value=2.9e+02 Score=22.23 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=51.3
Q ss_pred HHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCC
Q 039449 120 QPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDS 199 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~ 199 (253)
.++++++++.|.++.... .+.+.. ..+...|.+. ..-.-...+......+.-..+.++.+..+ ++ ++.-|+-
T Consensus 99 ~~~i~~lk~~g~~v~~~v-~s~~~a-~~a~~~GaD~--Ivv~g~eagGh~g~~~~~~ll~~v~~~~~-iP---viaaGGI 170 (307)
T TIGR03151 99 GKYIPRLKENGVKVIPVV-ASVALA-KRMEKAGADA--VIAEGMESGGHIGELTTMALVPQVVDAVS-IP---VIAAGGI 170 (307)
T ss_pred HHHHHHHHHcCCEEEEEc-CCHHHH-HHHHHcCCCE--EEEECcccCCCCCCCcHHHHHHHHHHHhC-CC---EEEECCC
Confidence 358889999887764322 333333 3455566654 11110111111112345566677776666 53 7777753
Q ss_pred cc-cchhhhhhcCCeEEEEc
Q 039449 200 FR-KDYVPAKSVGMHALLVD 218 (253)
Q Consensus 200 ~~-~Di~~a~~~G~~~i~~~ 218 (253)
.. .|+..+...|...|++.
T Consensus 171 ~~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 171 ADGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred CCHHHHHHHHHcCCCEeecc
Confidence 31 46888888999999887
No 421
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=30.62 E-value=64 Score=22.67 Aligned_cols=28 Identities=11% Similarity=0.090 Sum_probs=22.7
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchh
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQ 144 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~ 144 (253)
+.+.+.++.++++|.+++.+|+.....+
T Consensus 93 ~~~~~~~~~a~~~g~~ii~iT~~~~s~l 120 (154)
T TIGR00441 93 KNVLKAIEAAKDKGMKTITLAGKDGGKM 120 (154)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCCch
Confidence 4577888899999999999999766443
No 422
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=30.55 E-value=1.6e+02 Score=21.19 Aligned_cols=16 Identities=38% Similarity=0.515 Sum_probs=7.4
Q ss_pred HHHHHHHHcCCEEEEE
Q 039449 121 PFLRWAREKGLIVGII 136 (253)
Q Consensus 121 ~~l~~l~~~g~~~~i~ 136 (253)
++++.+.+++.+++++
T Consensus 37 ~ll~~~~~~~~~v~ll 52 (171)
T cd06533 37 ALLELAAQKGLRVFLL 52 (171)
T ss_pred HHHHHHHHcCCeEEEE
Confidence 4444444444555444
No 423
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=30.38 E-value=3.3e+02 Score=23.18 Aligned_cols=64 Identities=17% Similarity=0.130 Sum_probs=38.6
Q ss_pred CEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCC-CceEEEc
Q 039449 131 LIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAP-EEALHIG 197 (253)
Q Consensus 131 ~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~-~~~~~iG 197 (253)
.+++|+|+.+......++..+.-- ++.+...++...+. +...+.-+..+++.++ -.. -+++.|+
T Consensus 130 ~~i~vits~~~aa~~D~~~~~~~r-~p~~~~~~~~~~vQ-G~~a~~~i~~al~~~~-~~~~~dviii~ 194 (432)
T TIGR00237 130 KRVGVITSQTGAALADILHILKRR-DPSLKVVIYPTLVQ-GEGAVQSIVESIELAN-TKNECDVLIVG 194 (432)
T ss_pred CEEEEEeCCccHHHHHHHHHHHhh-CCCceEEEeccccc-CccHHHHHHHHHHHhh-cCCCCCEEEEe
Confidence 479999999988877777776543 22455545544443 2333455556666665 322 3677774
No 424
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=30.30 E-value=2.5e+02 Score=22.36 Aligned_cols=99 Identities=14% Similarity=0.050 Sum_probs=51.5
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCC---CHHHHHHHHHHhCCCCCCceEE
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKP---DPRIYEIALERAGNIAPEEALH 195 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp---~~~~~~~~~~~~~~~~~~~~~~ 195 (253)
..++|+..++.||-+..+.-.+.+.++.+++...-...+.+-. ++...-...+ -..+...++++.+ ++ =+++
T Consensus 6 ~k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq--~s~~~~~~~~~~~~~~~~~~~a~~~~-VP--ValH 80 (286)
T PRK12738 6 TKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILA--GTPGTFKHIALEEIYALCSAYSTTYN-MP--LALH 80 (286)
T ss_pred HHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEE--cCcchhhhCCHHHHHHHHHHHHHHCC-CC--EEEE
Confidence 5677888888888887777777766666665432222001110 0111101111 1123444455555 42 3344
Q ss_pred E--cCCcccchhhhhhcCCeEEEEcCCCCC
Q 039449 196 I--GDSFRKDYVPAKSVGMHALLVDRFKTP 223 (253)
Q Consensus 196 i--GD~~~~Di~~a~~~G~~~i~~~~~~~~ 223 (253)
. |.++ ..+..|.++|+.+|+++++..+
T Consensus 81 LDHg~~~-e~i~~ai~~GFtSVM~DgS~lp 109 (286)
T PRK12738 81 LDHHESL-DDIRRKVHAGVRSAMIDGSHFP 109 (286)
T ss_pred CCCCCCH-HHHHHHHHcCCCeEeecCCCCC
Confidence 3 2334 3566677789999999965443
No 425
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=30.27 E-value=26 Score=28.80 Aligned_cols=18 Identities=28% Similarity=0.207 Sum_probs=15.6
Q ss_pred CceEEEEecCCceeccCC
Q 039449 6 RLRCITVDVTGTLLAYKG 23 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~ 23 (253)
+.+.|-||=|+||++...
T Consensus 146 ~L~LvTFDgDvTLY~DG~ 163 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGA 163 (408)
T ss_pred CceEEEEcCCcccccCCC
Confidence 689999999999998543
No 426
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=30.17 E-value=2.8e+02 Score=21.96 Aligned_cols=98 Identities=23% Similarity=0.172 Sum_probs=50.7
Q ss_pred HHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCC---CHHHHHHHHHHhCCCCCCceEEE
Q 039449 120 QPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKP---DPRIYEIALERAGNIAPEEALHI 196 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp---~~~~~~~~~~~~~~~~~~~~~~i 196 (253)
.++|+..++.||-+..+.-.+.+.++.+++...-...+.+-.+ +...-...+ -..++..+.+... ++ =+++.
T Consensus 2 k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~--~~~~~~~~~~~~~~~~~~~~a~~~~-VP--V~lHL 76 (276)
T cd00947 2 KELLKKAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQI--SEGAIKYAGLELLVAMVKAAAERAS-VP--VALHL 76 (276)
T ss_pred HHHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEc--CcchhhhCCHHHHHHHHHHHHHHCC-CC--EEEEC
Confidence 4677778888888877777776666666654322210011111 111111112 1123334444444 32 33333
Q ss_pred cCCcc--cchhhhhhcCCeEEEEcCCCCC
Q 039449 197 GDSFR--KDYVPAKSVGMHALLVDRFKTP 223 (253)
Q Consensus 197 GD~~~--~Di~~a~~~G~~~i~~~~~~~~ 223 (253)
|+-. .++..|.++|+.+|+++.+..+
T Consensus 77 -DH~~~~~~i~~ai~~GftSVMiD~S~l~ 104 (276)
T cd00947 77 -DHGSSFELIKRAIRAGFSSVMIDGSHLP 104 (276)
T ss_pred -CCCCCHHHHHHHHHhCCCEEEeCCCCCC
Confidence 4431 4677788889999999965443
No 427
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=29.71 E-value=3.4e+02 Score=22.78 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEc
Q 039449 173 PDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 173 p~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~ 218 (253)
++...+...++..+ .+ ++||.+. .-..|++.|++.+-+.
T Consensus 343 ~~~~e~~~~i~~~~-pD----l~ig~s~--~~~~a~~~gip~~~~~ 381 (410)
T cd01968 343 ANPRELKKLLKEKK-AD----LLVAGGK--ERYLALKLGIPFCDIN 381 (410)
T ss_pred CCHHHHHHHHhhcC-CC----EEEECCc--chhhHHhcCCCEEEcc
Confidence 44455555555554 33 6888876 4678888999987543
No 428
>COG1911 RPL30 Ribosomal protein L30E [Translation, ribosomal structure and biogenesis]
Probab=29.69 E-value=88 Score=20.12 Aligned_cols=38 Identities=11% Similarity=-0.063 Sum_probs=28.8
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhc
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVILPAL 151 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~ 151 (253)
...-|....++.++...-+++++..+.+...+..+++.
T Consensus 19 kvilG~k~tiK~lk~gkaKliiiAsN~P~~~k~~ieyY 56 (100)
T COG1911 19 KVILGSKRTIKSLKLGKAKLIIIASNCPKELKEDIEYY 56 (100)
T ss_pred CEEEehHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHH
Confidence 34458999999999876788777777777777677765
No 429
>PF08149 BING4CT: BING4CT (NUC141) domain; InterPro: IPR012952 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This C-terminal domain is found in the BING4 family of nucleolar WD40 repeat proteins [].
Probab=29.52 E-value=1e+02 Score=19.04 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=16.4
Q ss_pred hhcCCeEEEEcCCCCCChhhhhh
Q 039449 208 KSVGMHALLVDRFKTPDAKEWRK 230 (253)
Q Consensus 208 ~~~G~~~i~~~~~~~~~~~~~~~ 230 (253)
...|+.++.|.+.|.+....+..
T Consensus 28 h~~G~sSiiVPGsGe~NfDs~e~ 50 (80)
T PF08149_consen 28 HSKGFSSIIVPGSGEPNFDSLEA 50 (80)
T ss_pred ccCceeEEeccCCCCCCCCcccC
Confidence 33489999999877776665443
No 430
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=29.38 E-value=81 Score=21.83 Aligned_cols=34 Identities=21% Similarity=0.166 Sum_probs=24.5
Q ss_pred ceEEEEecCCceeccCC---CHHHHHHHHHHHcCCCC
Q 039449 7 LRCITVDVTGTLLAYKG---ELGDYYCMAAKSVGLPC 40 (253)
Q Consensus 7 ~k~i~fD~DGTL~~~~~---~~~~~~~~~~~~~g~~~ 40 (253)
.-..++|+||.+++..+ .....+...+.++|.+.
T Consensus 43 tgiAildL~G~~l~l~S~R~~~~~evi~~I~~~G~Pv 79 (138)
T PF04312_consen 43 TGIAILDLDGELLDLKSSRNMSRSEVIEWISEYGKPV 79 (138)
T ss_pred eEEEEEecCCcEEEEEeecCCCHHHHHHHHHHcCCEE
Confidence 35678999999998544 34556667777888663
No 431
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=29.28 E-value=1.9e+02 Score=19.78 Aligned_cols=89 Identities=18% Similarity=0.120 Sum_probs=48.6
Q ss_pred HHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCc--
Q 039449 123 LRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSF-- 200 (253)
Q Consensus 123 l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~-- 200 (253)
-..|+..|++++-+- -. ...+.+++..--.+ .+.+..|...+...+.-..+...++..+ +. +-.+++|-..
T Consensus 20 ~~~L~~~GfeVidLG-~~-v~~e~~v~aa~~~~---adiVglS~L~t~~~~~~~~~~~~l~~~g-l~-~v~vivGG~~~i 92 (128)
T cd02072 20 DHAFTEAGFNVVNLG-VL-SPQEEFIDAAIETD---ADAILVSSLYGHGEIDCKGLREKCDEAG-LK-DILLYVGGNLVV 92 (128)
T ss_pred HHHHHHCCCEEEECC-CC-CCHHHHHHHHHHcC---CCEEEEeccccCCHHHHHHHHHHHHHCC-CC-CCeEEEECCCCC
Confidence 345677888874332 22 22233333321111 2444455555555554445555666666 63 3558888773
Q ss_pred -c----cchhhhhhcCCeEEEEc
Q 039449 201 -R----KDYVPAKSVGMHALLVD 218 (253)
Q Consensus 201 -~----~Di~~a~~~G~~~i~~~ 218 (253)
. .+...++++|+..++-+
T Consensus 93 ~~~d~~~~~~~L~~~Gv~~vf~p 115 (128)
T cd02072 93 GKQDFEDVEKRFKEMGFDRVFAP 115 (128)
T ss_pred ChhhhHHHHHHHHHcCCCEEECc
Confidence 1 24466999999888865
No 432
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=29.20 E-value=2e+02 Score=22.57 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=14.8
Q ss_pred CceEEEEecCCceeccCC
Q 039449 6 RLRCITVDVTGTLLAYKG 23 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~~ 23 (253)
+.++++||+||||.+-..
T Consensus 17 ~~~~~~lDyDGTl~~i~~ 34 (266)
T COG1877 17 RKRLLFLDYDGTLTEIVP 34 (266)
T ss_pred cceEEEEecccccccccc
Confidence 458999999999998543
No 433
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.20 E-value=66 Score=19.87 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=19.2
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCc
Q 039449 119 SQPFLRWAREKGLIVGIISNAEY 141 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~ 141 (253)
..++++.|++.|+++..+|++..
T Consensus 55 ~~~i~~~L~~~G~~~~~~~~~~~ 77 (85)
T cd04906 55 LAELLEDLKSAGYEVVDLSDDEL 77 (85)
T ss_pred HHHHHHHHHHCCCCeEECCCCHH
Confidence 77889999999999887777654
No 434
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=28.94 E-value=3e+02 Score=21.92 Aligned_cols=102 Identities=19% Similarity=0.199 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCcc-CC---CHHHHHHHHHHhCCCCCCce
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVE-KP---DPRIYEIALERAGNIAPEEA 193 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~-kp---~~~~~~~~~~~~~~~~~~~~ 193 (253)
...++|+..++.+|-+..+.-.+.+.++.+++...-...+.+-. .+...... .+ -..+...++++.. .+-.=+
T Consensus 5 ~~~~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq--~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~VPV~ 81 (285)
T PRK07709 5 SMKEMLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILG--VSEGAARHMTGFKTVVAMVKALIEEMN-ITVPVA 81 (285)
T ss_pred cHHHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEE--cCcchhhhcCCHHHHHHHHHHHHHHcC-CCCcEE
Confidence 45688888888888888777777777666665442222001111 11111111 11 1223444455444 333345
Q ss_pred EEEc--CCcccchhhhhhcCCeEEEEcCCCCC
Q 039449 194 LHIG--DSFRKDYVPAKSVGMHALLVDRFKTP 223 (253)
Q Consensus 194 ~~iG--D~~~~Di~~a~~~G~~~i~~~~~~~~ 223 (253)
++.+ .++ .++..|.++|+.+|+++.+..+
T Consensus 82 lHLDHg~~~-e~i~~ai~~GftSVM~DgS~lp 112 (285)
T PRK07709 82 IHLDHGSSF-EKCKEAIDAGFTSVMIDASHHP 112 (285)
T ss_pred EECCCCCCH-HHHHHHHHcCCCEEEEeCCCCC
Confidence 5552 233 4777888889999999965443
No 435
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=28.91 E-value=2e+02 Score=22.24 Aligned_cols=22 Identities=14% Similarity=0.190 Sum_probs=14.2
Q ss_pred HHHHHHHHHcCCEEEEEeCCCc
Q 039449 120 QPFLRWAREKGLIVGIISNAEY 141 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~ 141 (253)
.++++...++|++++++-+.+.
T Consensus 95 ~~ll~~~~~~~~~v~llG~~~~ 116 (243)
T PRK03692 95 EALMARAGKEGTPVFLVGGKPE 116 (243)
T ss_pred HHHHHHHHhcCCeEEEECCCHH
Confidence 4556666667888887744443
No 436
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=28.84 E-value=3.2e+02 Score=22.28 Aligned_cols=95 Identities=15% Similarity=-0.005 Sum_probs=58.8
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHH---HHHHH-hCCCCCCc
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYE---IALER-AGNIAPEE 192 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~---~~~~~-~~~~~~~~ 192 (253)
+.+.++.+-|.+. ..++++-......++.+.+...+.- +-+. .+..-|. +++. .+.+. .|.++.-.
T Consensus 88 Esl~DTarvls~y-~D~iviR~~~~~~~~~~a~~s~vPV-------INa~-~~~~HPt-QaL~Dl~Ti~e~~~g~l~g~k 157 (332)
T PRK04284 88 ESTKDTARVLGGM-YDGIEYRGFSQRTVETLAEYSGVPV-------WNGL-TDEDHPT-QVLADFLTAKEHLKKPYKDIK 157 (332)
T ss_pred cCHHHHHHHHHHh-CCEEEEecCchHHHHHHHHhCCCCE-------EECC-CCCCChH-HHHHHHHHHHHHhcCCcCCcE
Confidence 4567788888877 6666777666666666666655432 2222 2233443 2332 34455 35466678
Q ss_pred eEEEcCC----cccchhhhhhcCCeEEEEcCCC
Q 039449 193 ALHIGDS----FRKDYVPAKSVGMHALLVDRFK 221 (253)
Q Consensus 193 ~~~iGD~----~~~Di~~a~~~G~~~i~~~~~~ 221 (253)
+.+|||. .++.+.++...|+...++.+.+
T Consensus 158 ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~ 190 (332)
T PRK04284 158 FTYVGDGRNNVANALMQGAAIMGMDFHLVCPKE 190 (332)
T ss_pred EEEecCCCcchHHHHHHHHHHcCCEEEEECCcc
Confidence 9999997 3345667788899888887543
No 437
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.68 E-value=2.8e+02 Score=21.52 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=11.7
Q ss_pred ChHHHHHHHHHcCCEEEEE
Q 039449 118 DSQPFLRWAREKGLIVGII 136 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~ 136 (253)
...+.++.+++.|+.-+=+
T Consensus 17 ~~~e~~~~~~~~G~~~iEl 35 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEM 35 (284)
T ss_pred CHHHHHHHHHHcCCCeEEE
Confidence 4456777777777655434
No 438
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=28.58 E-value=2e+02 Score=22.39 Aligned_cols=17 Identities=18% Similarity=-0.060 Sum_probs=10.0
Q ss_pred ChHHHHHHHHHcCCEEE
Q 039449 118 DSQPFLRWAREKGLIVG 134 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~ 134 (253)
...+.++.+++.|+.-+
T Consensus 17 ~~~e~l~~~~~~G~~~V 33 (279)
T TIGR00542 17 CWLERLQLAKTCGFDFV 33 (279)
T ss_pred CHHHHHHHHHHcCCCEE
Confidence 34566666666665544
No 439
>PLN02735 carbamoyl-phosphate synthase
Probab=28.51 E-value=5.7e+02 Score=25.05 Aligned_cols=122 Identities=10% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCEEEEEeCCCcc-------------------hhhhhhhhcCCCCCcceeEe------------------
Q 039449 120 QPFLRWAREKGLIVGIISNAEYR-------------------YQDVILPALGVNQGTEWDFG------------------ 162 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~~-------------------~~~~~l~~~gl~~~~~f~~~------------------ 162 (253)
..+++.|++.|++++++.+++.. .+..+++..+.+. .+...
T Consensus 47 ~q~~kaLke~G~~Vi~vd~np~t~~~~~~~aD~~yi~p~~~e~v~~ii~~e~~D~--Iip~~gg~~gl~la~~l~~~g~L 124 (1102)
T PLN02735 47 TQACKALKEEGYEVVLINSNPATIMTDPETADRTYIAPMTPELVEQVIAKERPDA--LLPTMGGQTALNLAVALAESGIL 124 (1102)
T ss_pred HHHHHHHHHcCCEEEEEeCCcccccCChhhCcEEEeCCCCHHHHHHHHHHhCCCE--EEECCCchhhHHHHHHHhhhCHH
Q ss_pred ------eeccccCcc--CCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcC-CeEEEEcCCCCCChhhhhhcCC
Q 039449 163 ------VFSGLEGVE--KPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVG-MHALLVDRFKTPDAKEWRKSGA 233 (253)
Q Consensus 163 ------~~~~~~~~~--kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G-~~~i~~~~~~~~~~~~~~~~~~ 233 (253)
+........ --++..++.+++..| ++--....+.+.. .-...+.+.| .+.+.=+..+.. ..+.
T Consensus 125 e~~GI~~~G~~~~ai~~~~DK~~~k~~l~~~G-Ipvp~~~~v~s~e-ea~~~~~~iG~yPvVVKP~~~~G------G~Gv 196 (1102)
T PLN02735 125 EKYGVELIGAKLDAIKKAEDRELFKQAMEKIG-LKTPPSGIATTLD-ECFEIAEDIGEFPLIIRPAFTLG------GTGG 196 (1102)
T ss_pred HHCCCEEECCCHHHHHHhcCHHHHHHHHHHCC-CCCCCeeEeCCHH-HHHHHHHHhCCCCEEEEeCCCCC------CCce
Q ss_pred cccCCHHHHHHHHhhhhh
Q 039449 234 IVLPDLVAVKEFLTSEIS 251 (253)
Q Consensus 234 ~~i~~l~el~~~l~~~~~ 251 (253)
.++.|-+||...+.+.++
T Consensus 197 ~iv~n~eEL~~a~~~a~~ 214 (1102)
T PLN02735 197 GIAYNKEEFETICKAGLA 214 (1102)
T ss_pred EEECCHHHHHHHHHHHHh
No 440
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=28.36 E-value=23 Score=25.79 Aligned_cols=59 Identities=20% Similarity=0.215 Sum_probs=32.5
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceE
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEAL 194 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 194 (253)
..+.+.|+......++++++|++.. -+|+.+ ...+..+.. .+-..+...+++++|+.++
T Consensus 53 g~i~~~l~n~~~~~v~v~VVTDG~r--------ILGlGD-------~G~~Gm~I~----~GKl~ly~~~gGI~P~~~l 111 (182)
T PF00390_consen 53 GHIEEILRNWPERDVRVIVVTDGER--------ILGLGD-------LGVNGMGIP----IGKLALYTACGGIDPSRCL 111 (182)
T ss_dssp TCHHHHHTTSS-SS--EEEEE-SSS--------BTTTBS--------GGGGHHHH----HHHHHHHHHHHS-EGGGEE
T ss_pred HHHHHHHHhhhccCceEEEEeCchh--------hccccC-------cCcceEEee----ehhhhhHHhhcCcCccccc
Confidence 4577888888888899999999986 567766 443333322 2222333333338887765
No 441
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=28.34 E-value=49 Score=27.89 Aligned_cols=34 Identities=18% Similarity=0.097 Sum_probs=15.0
Q ss_pred HHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC
Q 039449 121 PFLRWAREKGLIVGIISNAEYRYQDVILPALGVN 154 (253)
Q Consensus 121 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 154 (253)
++=+.|++.|.++.+..+.....+..+++..++.
T Consensus 65 ~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~ 98 (429)
T TIGR02765 65 DLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVR 98 (429)
T ss_pred HHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCC
Confidence 3333444444455444444444444444444443
No 442
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=28.18 E-value=1.1e+02 Score=18.96 Aligned_cols=35 Identities=0% Similarity=-0.016 Sum_probs=25.2
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCCcchhhhhh
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAEYRYQDVIL 148 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l 148 (253)
.+.-|..+.++.+++...+++++.++..+.....+
T Consensus 11 kl~~G~~~v~kai~~gkaklViiA~D~~~~~~~~i 45 (82)
T PRK13602 11 SIVIGTKQTVKALKRGSVKEVVVAEDADPRLTEKV 45 (82)
T ss_pred CEEEcHHHHHHHHHcCCeeEEEEECCCCHHHHHHH
Confidence 45679999999998776778777777665544333
No 443
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=28.11 E-value=2.5e+02 Score=20.71 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=20.2
Q ss_pred CceEEEcCCcccc---hhhhhhcCCeEEEEcCCC
Q 039449 191 EEALHIGDSFRKD---YVPAKSVGMHALLVDRFK 221 (253)
Q Consensus 191 ~~~~~iGD~~~~D---i~~a~~~G~~~i~~~~~~ 221 (253)
.++++|=|.. .| +..|...|+++|.+..+.
T Consensus 128 Pdlviv~~~~-~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 128 PDLVIVLDPR-KEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred CCEEEEeCCc-cchHHHHHHHHcCCCEEEEecCC
Confidence 3455555654 35 667888899999887544
No 444
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=28.02 E-value=1.9e+02 Score=23.03 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=21.6
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhh
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQDVILPA 150 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~ 150 (253)
..+++|+..++.||-+..+.-.+.+.++.+++.
T Consensus 5 ~~k~ll~~A~~~~yaV~AfN~~n~e~~~avi~A 37 (283)
T PRK07998 5 NGRILLDRIQEKHVLAGAFNTTNLETTISILNA 37 (283)
T ss_pred cHHHHHHHHHHCCCEEEEEeeCCHHHHHHHHHH
Confidence 356777777777777776666666665555543
No 445
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=27.71 E-value=1.6e+02 Score=23.19 Aligned_cols=28 Identities=14% Similarity=0.247 Sum_probs=23.0
Q ss_pred ccCCCh-HHHHHHHHHcCCEEEEEeCCCc
Q 039449 114 TVFPDS-QPFLRWAREKGLIVGIISNAEY 141 (253)
Q Consensus 114 ~~~~~~-~~~l~~l~~~g~~~~i~s~~~~ 141 (253)
.+.++. .++++++++.|+.+.+.||+..
T Consensus 137 ll~~~~l~~l~~~~k~~g~~~~i~TnG~~ 165 (295)
T TIGR02494 137 LLQPEFALALLQACHERGIHTAVETSGFT 165 (295)
T ss_pred hchHHHHHHHHHHHHHcCCcEeeeCCCCC
Confidence 345664 6899999999999999999965
No 446
>PRK07206 hypothetical protein; Provisional
Probab=27.70 E-value=3.6e+02 Score=22.48 Aligned_cols=115 Identities=16% Similarity=0.176 Sum_probs=64.6
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcch--hhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEE
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRY--QDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALH 195 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~--~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~ 195 (253)
...++++.+++.++.. ++++..... +..+.+.+|+.- ..+...-..--++..+.+.++.+| ++.-....
T Consensus 58 ~~~~l~~~~~~~~~d~-vi~~~e~~~~~~a~l~~~l~l~~-------~~~~~~~~~~~dK~~~r~~l~~~g-i~~p~~~~ 128 (416)
T PRK07206 58 DIDDLVEFLRKLGPEA-IIAGAESGVELADRLAEILTPQY-------SNDPALSSARRNKAEMINALAEAG-LPAARQIN 128 (416)
T ss_pred CHHHHHHHHHHcCCCE-EEECCCccHHHHHHHHHhcCCCc-------CCChhhHHHhhCHHHHHHHHHHcC-CCcccEEe
Confidence 4557777777776554 555544321 233334455531 001111111235567778899999 88777776
Q ss_pred EcCCcccchhh-hhhcCC---eEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhh
Q 039449 196 IGDSFRKDYVP-AKSVGM---HALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 196 iGD~~~~Di~~-a~~~G~---~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~ 249 (253)
+.+ . .|+.. +...|. ++|.=+..+.. ..+..++.|.+|+...+.+.
T Consensus 129 ~~~-~-~e~~~~~~~~g~~~~P~VvKP~~g~g------s~gv~~v~~~~el~~~~~~~ 178 (416)
T PRK07206 129 TAD-W-EEAEAWLRENGLIDRPVVIKPLESAG------SDGVFICPAKGDWKHAFNAI 178 (416)
T ss_pred cCC-H-HHHHHHHHhcCCCCCCEEEeCCCCCC------CCCEEEeCCHHHHHHHHHHH
Confidence 643 4 35543 455676 76655432222 13557889999988877654
No 447
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=27.66 E-value=82 Score=23.18 Aligned_cols=28 Identities=18% Similarity=0.102 Sum_probs=23.0
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchh
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQ 144 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~ 144 (253)
+.+.+.++.++++|.+++.+|+.....+
T Consensus 125 ~~~i~~~~~ak~~g~~iI~iT~~~~s~l 152 (192)
T PRK00414 125 GNIIKAIEAARAKGMKVITLTGKDGGKM 152 (192)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCCChh
Confidence 5577888999999999999999866443
No 448
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=27.62 E-value=2.1e+02 Score=22.64 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=23.7
Q ss_pred ccCCChHHHHHHHHHcCC-EEEEEeCCCc
Q 039449 114 TVFPDSQPFLRWAREKGL-IVGIISNAEY 141 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~-~~~i~s~~~~ 141 (253)
.+.+++.++++.+++.|+ .+.+.||+..
T Consensus 68 ll~~~l~~iv~~l~~~g~~~v~i~TNG~l 96 (302)
T TIGR02668 68 LLRKDLIEIIRRIKDYGIKDVSMTTNGIL 96 (302)
T ss_pred ccccCHHHHHHHHHhCCCceEEEEcCchH
Confidence 557889999999999888 8889999864
No 449
>COG1180 PflA Pyruvate-formate lyase-activating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=27.43 E-value=45 Score=25.97 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=24.3
Q ss_pred CCChHHHHHHHHHcCCEEEEEeCCCcch
Q 039449 116 FPDSQPFLRWAREKGLIVGIISNAEYRY 143 (253)
Q Consensus 116 ~~~~~~~l~~l~~~g~~~~i~s~~~~~~ 143 (253)
.+.+.++++.+++.|+++++.||+....
T Consensus 98 ~e~~~~~~~~ake~Gl~~~l~TnG~~~~ 125 (260)
T COG1180 98 AEFALDLLRAAKERGLHVALDTNGFLPP 125 (260)
T ss_pred HHHHHHHHHHHHHCCCcEEEEcCCCCCH
Confidence 4668899999999999999999997654
No 450
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=27.43 E-value=3.3e+02 Score=21.91 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=57.9
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHH---HHHHHhCCCCCCce
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYE---IALERAGNIAPEEA 193 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~---~~~~~~~~~~~~~~ 193 (253)
+-+.+..+-|...|..++++-......++...+...++- +-+......-|. +++. .+.+.+|.++.-.+
T Consensus 88 Es~~Dta~vls~y~~D~iv~R~~~~~~~~~~a~~~~vPV-------INa~~g~~~HPt-Q~LaDl~Ti~e~~G~l~g~kv 159 (305)
T PRK00856 88 ETLADTIRTLSAMGADAIVIRHPQSGAARLLAESSDVPV-------INAGDGSHQHPT-QALLDLLTIREEFGRLEGLKV 159 (305)
T ss_pred cCHHHHHHHHHhcCCCEEEEeCCChHHHHHHHHHCCCCE-------EECCCCCCCCcH-HHHHHHHHHHHHhCCCCCCEE
Confidence 346677777877766776676666666666656554432 222221123343 2332 34555665677789
Q ss_pred EEEcCCc-----ccchhhhhhcCCeEEEEcCCC
Q 039449 194 LHIGDSF-----RKDYVPAKSVGMHALLVDRFK 221 (253)
Q Consensus 194 ~~iGD~~-----~~Di~~a~~~G~~~i~~~~~~ 221 (253)
.+|||.. .+-+..+...|+....+.+.+
T Consensus 160 ~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~ 192 (305)
T PRK00856 160 AIVGDIKHSRVARSNIQALTRLGAEVRLIAPPT 192 (305)
T ss_pred EEECCCCCCcHHHHHHHHHHHcCCEEEEECCcc
Confidence 9999963 234667788899877776433
No 451
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=27.41 E-value=87 Score=18.09 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCc
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEY 141 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~ 141 (253)
...++++.++++|+..+.+|+-..
T Consensus 16 ~~~~~~~~a~~~g~~~v~iTDh~~ 39 (67)
T smart00481 16 SPEELVKRAKELGLKAIAITDHGN 39 (67)
T ss_pred CHHHHHHHHHHcCCCEEEEeeCCc
Confidence 366899999999999999998874
No 452
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=27.35 E-value=2.3e+02 Score=20.01 Aligned_cols=84 Identities=19% Similarity=0.196 Sum_probs=46.1
Q ss_pred cCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCC---CHHHHHHHHHHhCCC--CCCceEEEcCCcccc
Q 039449 129 KGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKP---DPRIYEIALERAGNI--APEEALHIGDSFRKD 203 (253)
Q Consensus 129 ~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp---~~~~~~~~~~~~~~~--~~~~~~~iGD~~~~D 203 (253)
.+.++.+++|.+.......+..+.... +.++..+..|..+- .......++++.+ . ....++.|-|.. .-
T Consensus 48 ~~~~i~~~~~~D~~~~~~~~~~~~~~~----tlvi~iSkSG~T~Et~~~~~~a~~~l~~~~-~~~~~~~~vaiT~~~-s~ 121 (158)
T cd05015 48 GGLRLHFVSNVDPDDLAELLKKLDPET----TLFIVISKSGTTLETLANARLAREWLEEAG-GDDLAKHFVAITDNG-SG 121 (158)
T ss_pred CCceEEEEeCCCHHHHHHHHHhCCccc----EEEEEEECCcCCHHHHHHHHHHHHHHHHhc-cccccceEEEEcCCC-hH
Confidence 357788888888877677777765554 33333333333221 1222223333333 2 355888998855 44
Q ss_pred hhh-hhhcCCeEEEEc
Q 039449 204 YVP-AKSVGMHALLVD 218 (253)
Q Consensus 204 i~~-a~~~G~~~i~~~ 218 (253)
+.. +...|.....+.
T Consensus 122 l~~~a~~~~~~~~~~~ 137 (158)
T cd05015 122 LLKKAGIEGLNTFEIP 137 (158)
T ss_pred HHHHcCCCcceeeeCC
Confidence 544 555566655554
No 453
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=27.29 E-value=4.4e+02 Score=23.28 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=48.6
Q ss_pred CChHHHH-HHHHHcCCEEEEEeCCCcch----hhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHH---HHhCCC
Q 039449 117 PDSQPFL-RWAREKGLIVGIISNAEYRY----QDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIAL---ERAGNI 188 (253)
Q Consensus 117 ~~~~~~l-~~l~~~g~~~~i~s~~~~~~----~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~---~~~~~~ 188 (253)
+|+.+-+ ..+++.|.+++++++..... +...++..|+. .+..++...+.. |+ .+....++ ...+ .
T Consensus 195 ~g~l~~l~~~l~~~g~k~~iV~d~~v~~~~~~l~~~L~~~g~~---v~~~v~p~~E~~--ks-l~~v~~~~~~l~~~~-~ 267 (542)
T PRK14021 195 EGAMNHLPQVLGPKPVKVALIHTQPVQRHSDRARTLLRQGGYE---VSDIVIPDAEAG--KT-IEVANGIWQRLGNEG-F 267 (542)
T ss_pred CChHHHHHHHHHhcCCeEEEEECccHHHHHHHHHHHHHhCCCc---eEEEEeCCCccc--CC-HHHHHHHHHHHHhcC-C
Confidence 4443333 44555566777777654321 22233334442 233322222221 22 23333333 3344 4
Q ss_pred C-CCceEEEcCCcccchhhhhh----cCCeEEEEcC
Q 039449 189 A-PEEALHIGDSFRKDYVPAKS----VGMHALLVDR 219 (253)
Q Consensus 189 ~-~~~~~~iGD~~~~Di~~a~~----~G~~~i~~~~ 219 (253)
+ .+-++.||-+--.|+..+-. .|++.|.++.
T Consensus 268 ~r~D~IIAIGGGsv~D~AKfvA~~y~rGi~~i~vPT 303 (542)
T PRK14021 268 TRSDAIVGLGGGAATDLAGFVAATWMRGIRYVNCPT 303 (542)
T ss_pred CCCcEEEEEcChHHHHHHHHHHHHHHcCCCEEEeCC
Confidence 3 34467798855488887766 4999999884
No 454
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.97 E-value=2.2e+02 Score=19.68 Aligned_cols=93 Identities=17% Similarity=0.164 Sum_probs=48.2
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcC
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGD 198 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD 198 (253)
..-+...|++.|++++-+-... ..+.+++..--.+ .+.+..|...+...+.-..+...++..+ +. ...+++|-
T Consensus 18 k~iv~~~l~~~GfeVi~LG~~v--~~e~~v~aa~~~~---adiVglS~l~~~~~~~~~~~~~~l~~~g-l~-~~~vivGG 90 (134)
T TIGR01501 18 NKILDHAFTNAGFNVVNLGVLS--PQEEFIKAAIETK---ADAILVSSLYGHGEIDCKGLRQKCDEAG-LE-GILLYVGG 90 (134)
T ss_pred HHHHHHHHHHCCCEEEECCCCC--CHHHHHHHHHHcC---CCEEEEecccccCHHHHHHHHHHHHHCC-CC-CCEEEecC
Confidence 3334456778899875333222 2333333321111 1334445544444333334445566666 53 34578888
Q ss_pred Cc---ccchh----hhhhcCCeEEEEc
Q 039449 199 SF---RKDYV----PAKSVGMHALLVD 218 (253)
Q Consensus 199 ~~---~~Di~----~a~~~G~~~i~~~ 218 (253)
.+ ..|.. .++++|+..++-+
T Consensus 91 ~~vi~~~d~~~~~~~l~~~Gv~~vF~p 117 (134)
T TIGR01501 91 NLVVGKQDFPDVEKRFKEMGFDRVFAP 117 (134)
T ss_pred CcCcChhhhHHHHHHHHHcCCCEEECc
Confidence 52 24544 4899998877754
No 455
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=26.85 E-value=78 Score=24.19 Aligned_cols=27 Identities=11% Similarity=0.240 Sum_probs=22.4
Q ss_pred cCCC-hHHHHHHHHHcCCEEEEEeCCCc
Q 039449 115 VFPD-SQPFLRWAREKGLIVGIISNAEY 141 (253)
Q Consensus 115 ~~~~-~~~~l~~l~~~g~~~~i~s~~~~ 141 (253)
+.++ +.++++.+++.|+++.+.||+..
T Consensus 83 l~~~~~~~l~~~~k~~g~~i~l~TNG~~ 110 (246)
T PRK11145 83 LQAEFVRDWFRACKKEGIHTCLDTNGFV 110 (246)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 4555 45899999999999999999975
No 456
>KOG2826 consensus Actin-related protein Arp2/3 complex, subunit ARPC2 [Cytoskeleton]
Probab=26.81 E-value=42 Score=25.47 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=14.3
Q ss_pred CceEEEEecCCceeccC
Q 039449 6 RLRCITVDVTGTLLAYK 22 (253)
Q Consensus 6 ~~k~i~fD~DGTL~~~~ 22 (253)
.++.++-|+|||+++-.
T Consensus 30 sid~~vaDFDgv~yhiS 46 (301)
T KOG2826|consen 30 SIDVTVADFDGVLYHIS 46 (301)
T ss_pred ceeEEEeccCceEEEcc
Confidence 37899999999999743
No 457
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=26.71 E-value=3.3e+02 Score=21.68 Aligned_cols=99 Identities=15% Similarity=0.096 Sum_probs=52.0
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCC---CHHHHHHHHHHhCCCCCCceEE
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKP---DPRIYEIALERAGNIAPEEALH 195 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp---~~~~~~~~~~~~~~~~~~~~~~ 195 (253)
..++|+..++.||-+..+.-.+.+.++.+++...-...+.+-. ++...-...+ -..+...++++.. ++ =+++
T Consensus 6 ~k~il~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq--~~~~~~~~~g~~~~~~~~~~~A~~~~-VP--V~lH 80 (284)
T PRK09195 6 TKQMLNNAQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIA--GTPGTFSYAGTEYLLAIVSAAAKQYH-HP--LALH 80 (284)
T ss_pred HHHHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEE--cChhHHhhCCHHHHHHHHHHHHHHCC-CC--EEEE
Confidence 5677788888888777777666666665555432221001111 0110000111 1234445555555 43 3344
Q ss_pred E--cCCcccchhhhhhcCCeEEEEcCCCCC
Q 039449 196 I--GDSFRKDYVPAKSVGMHALLVDRFKTP 223 (253)
Q Consensus 196 i--GD~~~~Di~~a~~~G~~~i~~~~~~~~ 223 (253)
. |.++ ..+..|.++|+.+|+++.+..+
T Consensus 81 LDHg~~~-e~i~~Ai~~GftSVM~DgS~l~ 109 (284)
T PRK09195 81 LDHHEKF-DDIAQKVRSGVRSVMIDGSHLP 109 (284)
T ss_pred CCCCCCH-HHHHHHHHcCCCEEEeCCCCCC
Confidence 4 2234 4667778889999999965433
No 458
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=26.68 E-value=1.5e+02 Score=21.24 Aligned_cols=55 Identities=22% Similarity=0.157 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHH
Q 039449 120 QPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIAL 182 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~ 182 (253)
.+.++..++.|++++.+|......++.+.+.+.- ...++.+..|.+|. ..++.++
T Consensus 2 ~~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~------k~~vl~G~SGvGKS--SLiN~L~ 56 (161)
T PF03193_consen 2 EELLEQYEKLGYPVFFISAKTGEGIEELKELLKG------KTSVLLGQSGVGKS--SLINALL 56 (161)
T ss_dssp HHHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT------SEEEEECSTTSSHH--HHHHHHH
T ss_pred HHHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC------CEEEEECCCCCCHH--HHHHHHH
Confidence 4567788889999999999877777766665522 23355566665554 3444443
No 459
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=26.64 E-value=1.7e+02 Score=23.48 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=33.0
Q ss_pred HHHHHHHHHcCCEEEEEeCCCcch---hhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhC
Q 039449 120 QPFLRWAREKGLIVGIISNAEYRY---QDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAG 186 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~~~---~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~ 186 (253)
++.-++|.++|++++++|-+.... ..++.+..+.+ ..+...+ ..+++. .|+++.+.+.
T Consensus 63 KayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~ve------v~~i~~D--ft~~~~-~ye~i~~~l~ 123 (312)
T KOG1014|consen 63 KAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVE------VRIIAID--FTKGDE-VYEKLLEKLA 123 (312)
T ss_pred HHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcE------EEEEEEe--cCCCch-hHHHHHHHhc
Confidence 366788899999998888765533 23444444432 1122222 234444 6666666664
No 460
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=26.54 E-value=92 Score=25.08 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=22.1
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNA 139 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~ 139 (253)
.-+|+..+++++|+++|+++++....
T Consensus 68 ~~FPdp~~mi~~Lh~~G~~~~~~i~P 93 (317)
T cd06594 68 ERYPGLDELIEELKARGIRVLTYINP 93 (317)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEecC
Confidence 45799999999999999998776654
No 461
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=26.46 E-value=1.1e+02 Score=26.61 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=32.8
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEE
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALH 195 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~ 195 (253)
.+...|....+.+++.++||++.. -+|+.+ +.+...+..-.|-..|- .+++++|+.|+=
T Consensus 148 hi~~~l~nWp~~~V~~IvVTDGer--------ILGLGD-------lG~~GmgIpvgKL~Lyt----a~~GI~P~~cLP 206 (582)
T KOG1257|consen 148 HIKQVLKNWPERNVKAIVVTDGER--------ILGLGD-------LGVNGMGIPVGKLALYT----ALGGIRPSRCLP 206 (582)
T ss_pred hHHHHHHhCCccceeEEEEeCCCc--------eecccc-------cccCcccceecHHHHHH----HhcCCChhhcee
Confidence 355566666666677777777765 455555 44455544433333332 223388887763
No 462
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=26.30 E-value=93 Score=25.05 Aligned_cols=25 Identities=24% Similarity=0.221 Sum_probs=21.3
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISN 138 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~ 138 (253)
.-+|+..+++++|+++|+++++..+
T Consensus 63 ~~FPdp~~mi~~L~~~G~kv~~~i~ 87 (319)
T cd06591 63 ERFPDPKAMVRELHEMNAELMISIW 87 (319)
T ss_pred hhCCCHHHHHHHHHHCCCEEEEEec
Confidence 4579999999999999999877554
No 463
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=26.20 E-value=79 Score=21.66 Aligned_cols=36 Identities=17% Similarity=-0.090 Sum_probs=25.2
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCC
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGV 153 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl 153 (253)
...++.+++++.|+.++.+|..+...+....+..++
T Consensus 50 ~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~ 85 (149)
T cd03018 50 ALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGL 85 (149)
T ss_pred HHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCC
Confidence 444556666777888888887776666666776665
No 464
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=26.00 E-value=3.2e+02 Score=21.25 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=11.7
Q ss_pred ChHHHHHHHHHcCCEEEEEeCC
Q 039449 118 DSQPFLRWAREKGLIVGIISNA 139 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~ 139 (253)
...+.+.+.++.|+...++.+.
T Consensus 20 ~~~~~l~~a~~~gv~~~~~~~~ 41 (258)
T PRK11449 20 DEEASLQRAAQAGVGKIIVPAT 41 (258)
T ss_pred CHHHHHHHHHHCCCCEEEEeeC
Confidence 3456666666666544333333
No 465
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=25.93 E-value=2.8e+02 Score=20.68 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=47.2
Q ss_pred HHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCCc
Q 039449 121 PFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDSF 200 (253)
Q Consensus 121 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~~ 200 (253)
.+++.|.+.++++.+++.......-..++..|..- + ..+.. +++.+.++++... -++++-...
T Consensus 13 ~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~v-------v-~~d~~----~~~~l~~al~g~d-----~v~~~~~~~ 75 (233)
T PF05368_consen 13 SVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEV-------V-EADYD----DPESLVAALKGVD-----AVFSVTPPS 75 (233)
T ss_dssp HHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEE-------E-ES-TT-----HHHHHHHHTTCS-----EEEEESSCS
T ss_pred HHHHHHHhCCCCcEEEEeccchhhhhhhhcccceE-------e-ecccC----CHHHHHHHHcCCc-----eEEeecCcc
Confidence 55667777888998888887554444556665542 2 22222 4566666666332 344443321
Q ss_pred --------ccchhhhhhcCCeEEEEcC
Q 039449 201 --------RKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 201 --------~~Di~~a~~~G~~~i~~~~ 219 (253)
.+=+.+|+++|++.+....
T Consensus 76 ~~~~~~~~~~li~Aa~~agVk~~v~ss 102 (233)
T PF05368_consen 76 HPSELEQQKNLIDAAKAAGVKHFVPSS 102 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHT-SEEEESE
T ss_pred hhhhhhhhhhHHHhhhccccceEEEEE
Confidence 1336788999998886553
No 466
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=25.83 E-value=1.1e+02 Score=23.80 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhc---CCeEEEEcC
Q 039449 172 KPDPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSV---GMHALLVDR 219 (253)
Q Consensus 172 kp~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~---G~~~i~~~~ 219 (253)
..+...+.+-+..+| ++-.++..|||.+ .+|..+.+. -...+.+++
T Consensus 20 dtNa~~la~~L~~~G-~~v~~~~~VgD~~-~~I~~~l~~a~~r~D~vI~tG 68 (255)
T COG1058 20 DTNAAFLADELTELG-VDLARITTVGDNP-DRIVEALREASERADVVITTG 68 (255)
T ss_pred cchHHHHHHHHHhcC-ceEEEEEecCCCH-HHHHHHHHHHHhCCCEEEECC
Confidence 456778888899999 9999999999999 788755433 266677774
No 467
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.82 E-value=96 Score=24.95 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=22.5
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAE 140 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~ 140 (253)
.-+|+..+++++|+++|+++++..+..
T Consensus 70 ~~FPdp~~mi~~L~~~g~k~~~~i~P~ 96 (317)
T cd06599 70 DRFPDPAAFVAKFHERGIRLAPNIKPG 96 (317)
T ss_pred ccCCCHHHHHHHHHHCCCEEEEEeCCc
Confidence 568999999999999999998755443
No 468
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=25.79 E-value=3.3e+02 Score=21.31 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=18.8
Q ss_pred HHHHHHHHcCCEEEEEeCCCcchhhhhhhhc
Q 039449 121 PFLRWAREKGLIVGIISNAEYRYQDVILPAL 151 (253)
Q Consensus 121 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~ 151 (253)
.+-+.++++|+.+.+++.+.....+..++.+
T Consensus 22 gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l 52 (279)
T PF00532_consen 22 GIEQEAREHGYQLLLCNTGDDEEKEEYIELL 52 (279)
T ss_dssp HHHHHHHHTTCEEEEEEETTTHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEEecCCCchHHHHHHHHH
Confidence 3445677889998777655554444444443
No 469
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=25.72 E-value=2.5e+02 Score=21.94 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=12.4
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCc
Q 039449 119 SQPFLRWAREKGLIVGIISNAEY 141 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~ 141 (253)
+.++++...+.|.+++++-+.+.
T Consensus 97 ~~~Ll~~a~~~~~~vfllGgkp~ 119 (253)
T COG1922 97 VEALLKRAAEEGKRVFLLGGKPG 119 (253)
T ss_pred HHHHHHHhCccCceEEEecCCHH
Confidence 33445555555667666655544
No 470
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=25.64 E-value=49 Score=20.97 Aligned_cols=32 Identities=16% Similarity=0.294 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVN 154 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 154 (253)
++.++.+.|.+.|+++ +.|.+.. ..++..|++
T Consensus 1 e~~~~a~~l~~lG~~i-~AT~gTa----~~L~~~Gi~ 32 (95)
T PF02142_consen 1 EIVPLAKRLAELGFEI-YATEGTA----KFLKEHGIE 32 (95)
T ss_dssp THHHHHHHHHHTTSEE-EEEHHHH----HHHHHTT--
T ss_pred CHHHHHHHHHHCCCEE-EEChHHH----HHHHHcCCC
Confidence 3567788888888877 3555544 355566665
No 471
>PF12812 PDZ_1: PDZ-like domain
Probab=25.62 E-value=1.7e+02 Score=17.93 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=13.7
Q ss_pred cccCCHHHHHHHHhhhh
Q 039449 234 IVLPDLVAVKEFLTSEI 250 (253)
Q Consensus 234 ~~i~~l~el~~~l~~~~ 250 (253)
.-++||+++.+.+++.-
T Consensus 60 kpt~~Ld~f~~vvk~ip 76 (78)
T PF12812_consen 60 KPTPDLDDFIKVVKKIP 76 (78)
T ss_pred cCCcCHHHHHHHHHhCC
Confidence 47889999999988653
No 472
>PRK08005 epimerase; Validated
Probab=25.54 E-value=3e+02 Score=20.76 Aligned_cols=98 Identities=9% Similarity=-0.059 Sum_probs=55.7
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEE
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHI 196 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~i 196 (253)
+...++++++|+.|.+.++.=|-.+.. +.+...+..-+ +.-........+..+--+..++++.+.-. ..++.-+-|
T Consensus 93 ~~~~~~l~~Ik~~G~k~GlAlnP~Tp~-~~i~~~l~~vD--~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~-~~~~~~I~V 168 (210)
T PRK08005 93 QNPSEILADIRAIGAKAGLALNPATPL-LPYRYLALQLD--ALMIMTSEPDGRGQQFIAAMCEKVSQSRE-HFPAAECWA 168 (210)
T ss_pred cCHHHHHHHHHHcCCcEEEEECCCCCH-HHHHHHHHhcC--EEEEEEecCCCccceecHHHHHHHHHHHH-hcccCCEEE
Confidence 456789999999999999888876643 22222332222 22222222233334555667776655333 322223667
Q ss_pred cCCcc-cchhhhhhcCCeEEEEc
Q 039449 197 GDSFR-KDYVPAKSVGMHALLVD 218 (253)
Q Consensus 197 GD~~~-~Di~~a~~~G~~~i~~~ 218 (253)
+-+.. ..+..+.++|+..+.+.
T Consensus 169 DGGI~~~~i~~l~~aGad~~V~G 191 (210)
T PRK08005 169 DGGITLRAARLLAAAGAQHLVIG 191 (210)
T ss_pred ECCCCHHHHHHHHHCCCCEEEEC
Confidence 66551 24556788899876654
No 473
>PRK10425 DNase TatD; Provisional
Probab=25.50 E-value=3.3e+02 Score=21.22 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=13.3
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCC
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAE 140 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~ 140 (253)
++..+++++.++.|+.-.+.++.+
T Consensus 15 ~d~~~vl~~a~~~gv~~~i~~~~~ 38 (258)
T PRK10425 15 KDRDDVVARAFAAGVNGMLITGTN 38 (258)
T ss_pred ccHHHHHHHHHHCCCCEEEEeCCC
Confidence 455666777666665444444443
No 474
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=25.48 E-value=3.3e+02 Score=21.31 Aligned_cols=95 Identities=20% Similarity=0.190 Sum_probs=65.1
Q ss_pred CccCCChHHHHHH---HHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeecccc--CccCCCHHHHHHHHHHhCC
Q 039449 113 YTVFPDSQPFLRW---AREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLE--GVEKPDPRIYEIALERAGN 187 (253)
Q Consensus 113 ~~~~~~~~~~l~~---l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~--~~~kp~~~~~~~~~~~~~~ 187 (253)
-.++|+..++++. |-+.|+.|.-.++.+....+ .|+..|-.. ..-..... +.+-.++..++.+++..+
T Consensus 117 ~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~-rLed~Gc~a-----VMPlgsPIGSg~Gl~n~~~l~~i~e~~~- 189 (267)
T CHL00162 117 KYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAK-HLEDIGCAT-----VMPLGSPIGSGQGLQNLLNLQIIIENAK- 189 (267)
T ss_pred cccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHH-HHHHcCCeE-----EeeccCcccCCCCCCCHHHHHHHHHcCC-
Confidence 4677887777765 56689999999999887666 455565442 11112222 333567788888887765
Q ss_pred CCCCceEEEcC---CcccchhhhhhcCCeEEEEcC
Q 039449 188 IAPEEALHIGD---SFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 188 ~~~~~~~~iGD---~~~~Di~~a~~~G~~~i~~~~ 219 (253)
++ +++|- ++ +|+..|-+.|...++++.
T Consensus 190 vp----VivdAGIgt~-sDa~~AmElGaDgVL~nS 219 (267)
T CHL00162 190 IP----VIIDAGIGTP-SEASQAMELGASGVLLNT 219 (267)
T ss_pred Cc----EEEeCCcCCH-HHHHHHHHcCCCEEeecc
Confidence 43 44543 34 799999999999999993
No 475
>PRK13938 phosphoheptose isomerase; Provisional
Probab=25.37 E-value=91 Score=23.10 Aligned_cols=29 Identities=17% Similarity=0.026 Sum_probs=23.0
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhh
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQD 145 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 145 (253)
+.+.+.++.++++|.+++.+|+.....+.
T Consensus 127 ~~vi~a~~~Ak~~G~~vI~iT~~~~s~La 155 (196)
T PRK13938 127 MSVLRAAKTARELGVTVVAMTGESGGQLA 155 (196)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCChhh
Confidence 45678888889999999999998765433
No 476
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=25.25 E-value=3.4e+02 Score=21.38 Aligned_cols=68 Identities=9% Similarity=0.078 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHhCCCCCCceEEEcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhh
Q 039449 174 DPRIYEIALERAGNIAPEEALHIGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~ 249 (253)
++.....+++++| ++--....+.+.. .-...+...|.+.|.=+..+... .+...+.+.+|+.+.+.+.
T Consensus 98 dK~~~k~~l~~~g-Ip~p~~~~~~~~~-~~~~~~~~~~~P~ivKP~~g~~s------~Gv~~v~~~~el~~~~~~~ 165 (304)
T PRK01372 98 DKLRTKLVWQAAG-LPTPPWIVLTREE-DLLAAIDKLGLPLVVKPAREGSS------VGVSKVKEEDELQAALELA 165 (304)
T ss_pred CHHHHHHHHHHCC-CCCCCEEEEeCcc-hHHHHHhhcCCCEEEeeCCCCCC------CCEEEeCCHHHHHHHHHHH
Confidence 4567778899999 8877777665544 23455677888876554332221 2446788888888776543
No 477
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=25.20 E-value=56 Score=20.10 Aligned_cols=15 Identities=13% Similarity=0.166 Sum_probs=12.5
Q ss_pred eEEEEecCCceeccC
Q 039449 8 RCITVDVTGTLLAYK 22 (253)
Q Consensus 8 k~i~fD~DGTL~~~~ 22 (253)
-.++++=|||.++.+
T Consensus 41 ~~lvL~eDGT~VddE 55 (78)
T PF02017_consen 41 VRLVLEEDGTEVDDE 55 (78)
T ss_dssp CEEEETTTTCBESSC
T ss_pred cEEEEeCCCcEEccH
Confidence 357889999999966
No 478
>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]
Probab=25.16 E-value=91 Score=24.92 Aligned_cols=93 Identities=16% Similarity=0.107 Sum_probs=54.5
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCCcchhhh-hhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCC------C
Q 039449 118 DSQPFLRWAREKGLIVGIISNAEYRYQDV-ILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIA------P 190 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~~~~~~~-~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~------~ 190 (253)
|-.+++..|++++ +-+++||.-+..+-. ..+.+.+. +..+......+.+.+-+.+.++..| .+ |
T Consensus 275 gp~~li~llrqr~-RpylFSnslppavV~~a~ka~dll-------m~s~~~i~~~~a~~qrfr~~me~aG-ftIsg~~hP 345 (417)
T KOG1359|consen 275 GPKPLISLLRQRS-RPYLFSNSLPPAVVGMAAKAYDLL-------MVSSKEIQSRQANTQRFREFMEAAG-FTISGASHP 345 (417)
T ss_pred CChhHHHHHHhcC-CceeecCCCChhhhhhhHHHHHHH-------HhhHHHHHHHHHHHHHHHHHHHhcC-ceecCCCCC
Confidence 4456666666664 445777776543221 11111111 1223334455667778888888776 43 2
Q ss_pred CceEEEcCCcccchhhhhhc---CCeEEEEcCC
Q 039449 191 EEALHIGDSFRKDYVPAKSV---GMHALLVDRF 220 (253)
Q Consensus 191 ~~~~~iGD~~~~Di~~a~~~---G~~~i~~~~~ 220 (253)
=-.+++||.. --..++... |+.++.+..+
T Consensus 346 I~pv~lGda~-lA~~~ad~lLk~Gi~Vigfs~P 377 (417)
T KOG1359|consen 346 ICPVMLGDAR-LASKMADELLKRGIYVIGFSYP 377 (417)
T ss_pred ccceecccHH-HHHHHHHHHHhcCceEEeecCC
Confidence 3468999998 577777654 8888887743
No 479
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=25.12 E-value=93 Score=25.03 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=23.0
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNAE 140 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~~ 140 (253)
.-+|+..+++++|+++|+++++..+..
T Consensus 67 ~~FPdp~~mi~~L~~~G~k~~~~v~P~ 93 (317)
T cd06598 67 KAFPDPAGMIADLAKKGVKTIVITEPF 93 (317)
T ss_pred ccCCCHHHHHHHHHHcCCcEEEEEcCc
Confidence 567999999999999999998877543
No 480
>PF07453 NUMOD1: NUMOD1 domain; InterPro: IPR010896 This helix-turn-helix-containing DNA-binding domain is found associated in homing nucleases [].
Probab=25.03 E-value=1e+02 Score=15.33 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=20.1
Q ss_pred eEEEEecCCceeccCCCHHHHHHHHHHHcCCCC
Q 039449 8 RCITVDVTGTLLAYKGELGDYYCMAAKSVGLPC 40 (253)
Q Consensus 8 k~i~fD~DGTL~~~~~~~~~~~~~~~~~~g~~~ 40 (253)
++.+.|++|..+..... ..++.+.+|+..
T Consensus 2 ~V~~yd~~~~~i~~F~S----i~eAa~~l~i~~ 30 (37)
T PF07453_consen 2 PVYVYDLNTNEIKSFDS----IREAARYLGISH 30 (37)
T ss_pred eEEEEECCCCeEEEEcC----HHHHHHHhCCCH
Confidence 57889999999865544 445566677654
No 481
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=24.98 E-value=2.7e+02 Score=20.02 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=9.2
Q ss_pred HHHHHHHHcCCEEEEEeCCC
Q 039449 121 PFLRWAREKGLIVGIISNAE 140 (253)
Q Consensus 121 ~~l~~l~~~g~~~~i~s~~~ 140 (253)
++++.+.+.|.+++++-+..
T Consensus 39 ~l~~~~~~~~~~ifllG~~~ 58 (172)
T PF03808_consen 39 DLLRRAEQRGKRIFLLGGSE 58 (172)
T ss_pred HHHHHHHHcCCeEEEEeCCH
Confidence 44444444445554444443
No 482
>PF08444 Gly_acyl_tr_C: Aralkyl acyl-CoA:amino acid N-acyltransferase, C-terminal region; InterPro: IPR013652 This entry represents mammalian-specific glycine N-acyltransferase (also called aralkyl acyl-CoA:amino acid N-acyltransferase; 2.3.1.13 from EC). Mitochondrial acyltransferases catalyse the transfer of an acyl group from acyl-CoA to the N terminus of glycine to produce N-acylglycine. These enzymes can conjugate a multitude of substrates to form a variety of N-acylglycines. The CoA derivatives of a number of aliphatic and aromatic acids, but not phenylacetyl-CoA or (indol-3-yl)acetyl-CoA, can act as donor [, ].
Probab=24.98 E-value=93 Score=19.73 Aligned_cols=34 Identities=9% Similarity=0.082 Sum_probs=24.6
Q ss_pred HHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC
Q 039449 121 PFLRWAREKGLIVGIISNAEYRYQDVILPALGVN 154 (253)
Q Consensus 121 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 154 (253)
.+.++|.+.|++++.-+...-+...+.++.+|..
T Consensus 43 ~~~~~L~~~g~P~Y~hv~~~N~~~~r~~~~lg~~ 76 (89)
T PF08444_consen 43 HLAQYLHKLGFPFYGHVDEDNEASQRLSKSLGFI 76 (89)
T ss_pred HHHHHHHHCCCCeEeehHhccHHHHHHHHHCCCe
Confidence 5667788888888877777766666677777654
No 483
>PRK13529 malate dehydrogenase; Provisional
Probab=24.86 E-value=1.7e+02 Score=25.74 Aligned_cols=57 Identities=19% Similarity=0.200 Sum_probs=30.8
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceE
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEAL 194 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 194 (253)
+.+.|+......++++++|++.. -+||.+ +..... |-+.+-..+...+++++|+.|+
T Consensus 135 i~~~l~nwp~~~v~viVVTDG~r--------ILGLGD-------lG~~Gm----~I~~GKl~Ly~a~aGI~P~~~l 191 (563)
T PRK13529 135 IEDILQNAPNRDIKLIVVTDGER--------ILGIGD-------QGIGGM----GIPIGKLSLYTACGGIDPARTL 191 (563)
T ss_pred HHHHHhcCCcccceEEEEeCCce--------eeeccc-------cCCCcc----cccccHHHHhhccCCCChhhee
Confidence 44555554445567777777765 455554 333222 3333444455555458888765
No 484
>PF12261 T_hemolysin: Thermostable hemolysin; InterPro: IPR022050 This family of proteins is found in bacteria. Proteins in this family are typically between 200 and 228 amino acids in length. T_hemolysin is a pore-forming toxin of bacteria, able to lyse erythrocytes from a number of mammalian species.
Probab=24.83 E-value=1.1e+02 Score=22.38 Aligned_cols=33 Identities=9% Similarity=0.188 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 121 PFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 121 ~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
.+...|...|++.+++|.... ++..+.++|+..
T Consensus 107 ~l~~~L~~~g~~w~vfTaT~~--lr~~~~rlgl~~ 139 (179)
T PF12261_consen 107 ALAQLLAQQGFEWVVFTATRQ--LRNLFRRLGLPP 139 (179)
T ss_pred HHHHHHHHCCCCEEEEeCCHH--HHHHHHHcCCCc
Confidence 445667889999999998876 778899999986
No 485
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=24.79 E-value=3.7e+02 Score=21.58 Aligned_cols=96 Identities=11% Similarity=0.053 Sum_probs=58.7
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccC-ccCCCHHHHH---HHHHHhCCCCCCc
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEG-VEKPDPRIYE---IALERAGNIAPEE 192 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~-~~kp~~~~~~---~~~~~~~~~~~~~ 192 (253)
+.+.++.+-|... ..++++-...........++.+++ ++-...+ ..-|. +++. .+.+.+|.++.-.
T Consensus 83 Esi~Dta~vls~y-~D~iviR~~~~~~~~~~a~~s~vP--------VINa~~g~~~HPt-Q~LaDl~Ti~e~~g~l~g~~ 152 (301)
T TIGR00670 83 ETLADTIKTLSGY-SDAIVIRHPLEGAARLAAEVSEVP--------VINAGDGSNQHPT-QTLLDLYTIYEEFGRLDGLK 152 (301)
T ss_pred cCHHHHHHHHHHh-CCEEEEECCchhHHHHHHhhCCCC--------EEeCCCCCCCCcH-HHHHHHHHHHHHhCCCCCCE
Confidence 4567778888777 555566555555566555555443 2222222 23343 3333 3445566566678
Q ss_pred eEEEcCC-----cccchhhhhhcCCeEEEEcCCCC
Q 039449 193 ALHIGDS-----FRKDYVPAKSVGMHALLVDRFKT 222 (253)
Q Consensus 193 ~~~iGD~-----~~~Di~~a~~~G~~~i~~~~~~~ 222 (253)
+.+|||. .++-+.++...|+....+.+.+.
T Consensus 153 va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~ 187 (301)
T TIGR00670 153 IALVGDLKYGRTVHSLAEALTRFGVEVYLISPEEL 187 (301)
T ss_pred EEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccc
Confidence 9999997 33567788889999888875443
No 486
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=24.74 E-value=4e+02 Score=21.95 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=43.7
Q ss_pred HHHHHHHHcC--CEEEEEeCCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcC
Q 039449 121 PFLRWAREKG--LIVGIISNAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGD 198 (253)
Q Consensus 121 ~~l~~l~~~g--~~~~i~s~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD 198 (253)
.+-++|+++| ..++++|+......+.-.+ . .+-+.+++++++ ++.+++|.|
T Consensus 55 kiydeL~~~GedveVA~VsG~~~~~v~ad~~--------------I----------~~qld~vl~~~~---~~~~i~VsD 107 (344)
T PF04123_consen 55 KIYDELKAEGEDVEVAVVSGSPDVGVEADRK--------------I----------AEQLDEVLSKFD---PDSAIVVSD 107 (344)
T ss_pred HHHHHHHhcCCCeEEEEEECCCCCchhhHHH--------------H----------HHHHHHHHHhCC---CCEEEEEec
Confidence 5556777766 6778888877643221110 0 123445666665 779999999
Q ss_pred Ccccchh--hhhhcCCeEEEEcC
Q 039449 199 SFRKDYV--PAKSVGMHALLVDR 219 (253)
Q Consensus 199 ~~~~Di~--~a~~~G~~~i~~~~ 219 (253)
+. .|-. ...+.-.+.+.+.|
T Consensus 108 Ga-eDE~vlPiIqSr~~V~sV~R 129 (344)
T PF04123_consen 108 GA-EDERVLPIIQSRVPVDSVKR 129 (344)
T ss_pred Ch-hhhhhhHhhhccCceEEEEE
Confidence 99 6865 44555666666653
No 487
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=24.73 E-value=1.6e+02 Score=22.63 Aligned_cols=13 Identities=23% Similarity=0.205 Sum_probs=5.6
Q ss_pred HHHHHHHHcCCEE
Q 039449 121 PFLRWAREKGLIV 133 (253)
Q Consensus 121 ~~l~~l~~~g~~~ 133 (253)
+++..|.+.|+.|
T Consensus 200 ~iI~~l~~~g~~V 212 (236)
T PF12017_consen 200 NIIEKLHEIGYNV 212 (236)
T ss_pred HHHHHHHHCCCEE
Confidence 3344444444444
No 488
>PF08353 DUF1727: Domain of unknown function (DUF1727); InterPro: IPR013564 This domain of unknown function is found at the C terminus of bacterial proteins which include UDP-N-acetylmuramyl tripeptide synthase and the related Mur ligase.
Probab=24.72 E-value=1.4e+02 Score=19.89 Aligned_cols=30 Identities=17% Similarity=0.165 Sum_probs=16.8
Q ss_pred HHHcCCEEEEEeCCCcchhhhhhhhcCCCC
Q 039449 126 AREKGLIVGIISNAEYRYQDVILPALGVNQ 155 (253)
Q Consensus 126 l~~~g~~~~i~s~~~~~~~~~~l~~~gl~~ 155 (253)
|.+.+++-+++|+.-..-...+|+..|++.
T Consensus 49 L~~~~i~~viv~G~Ra~DmalRLkyAGv~~ 78 (113)
T PF08353_consen 49 LADPNIKQVIVSGTRAEDMALRLKYAGVDE 78 (113)
T ss_pred HhcCCCCEEEEEeeeHHHHHhHeeecCcch
Confidence 344445555666665555555666666653
No 489
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.62 E-value=1.1e+02 Score=24.52 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.3
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeCC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISNA 139 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~~ 139 (253)
+-+|+..+++++|+++|+++++..+-
T Consensus 67 ~~FPdp~~mi~~l~~~G~k~~l~i~P 92 (303)
T cd06592 67 TKFPDPKGMIDQLHDLGFRVTLWVHP 92 (303)
T ss_pred hhCCCHHHHHHHHHHCCCeEEEEECC
Confidence 45799999999999999999876655
No 490
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=24.61 E-value=2.9e+02 Score=20.38 Aligned_cols=88 Identities=14% Similarity=0.012 Sum_probs=44.7
Q ss_pred HHHHHHHHcCCEEEEEe-CCCcchhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceEEEcCC
Q 039449 121 PFLRWAREKGLIVGIIS-NAEYRYQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEALHIGDS 199 (253)
Q Consensus 121 ~~l~~l~~~g~~~~i~s-~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~~iGD~ 199 (253)
-+-..++..|++++-+- +-+.+..-..+...+ .+.+..|.......+.-.-+...+++.+ ...+-.+++|-.
T Consensus 101 ~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~~------~d~v~lS~~~~~~~~~~~~~i~~lr~~~-~~~~~~i~vGG~ 173 (201)
T cd02070 101 LVATMLEANGFEVIDLGRDVPPEEFVEAVKEHK------PDILGLSALMTTTMGGMKEVIEALKEAG-LRDKVKVMVGGA 173 (201)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC------CCEEEEeccccccHHHHHHHHHHHHHCC-CCcCCeEEEECC
Confidence 34456778899985333 223333333333332 2444445544444333333333444444 322445777777
Q ss_pred cccchhhhhhcCCeEEE
Q 039449 200 FRKDYVPAKSVGMHALL 216 (253)
Q Consensus 200 ~~~Di~~a~~~G~~~i~ 216 (253)
. -.-..+...|.....
T Consensus 174 ~-~~~~~~~~~GaD~~~ 189 (201)
T cd02070 174 P-VNQEFADEIGADGYA 189 (201)
T ss_pred c-CCHHHHHHcCCcEEE
Confidence 7 355678888866544
No 491
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=24.36 E-value=1.3e+02 Score=23.26 Aligned_cols=43 Identities=23% Similarity=0.415 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCC--CceEEEcCCcccchhhhhhcCCeEEEEcC
Q 039449 175 PRIYEIALERAGNIAP--EEALHIGDSFRKDYVPAKSVGMHALLVDR 219 (253)
Q Consensus 175 ~~~~~~~~~~~~~~~~--~~~~~iGD~~~~Di~~a~~~G~~~i~~~~ 219 (253)
.+.|..-++.+| +++ +++-||.|+.++--.+|.-.|+- ||+++
T Consensus 88 QelYL~SL~~lG-id~~~hDIRFVEDnWEsPTLGAwGLGWE-VWldG 132 (279)
T cd00733 88 QELYLESLEALG-INPKEHDIRFVEDNWESPTLGAWGLGWE-VWLDG 132 (279)
T ss_pred HHHHHHHHHHhC-CCccccCeeEeecCCCCCcccccccccE-EEECC
Confidence 366667788888 766 58999999998888888888875 56663
No 492
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=24.19 E-value=6.6e+02 Score=24.47 Aligned_cols=116 Identities=10% Similarity=0.015 Sum_probs=66.0
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcch--hhhhhhhcCCCCCcceeEeeecc-ccCccCCCHHHHHHHHHHhCCCCCCceEE
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYRY--QDVILPALGVNQGTEWDFGVFSG-LEGVEKPDPRIYEIALERAGNIAPEEALH 195 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~~--~~~~l~~~gl~~~~~f~~~~~~~-~~~~~kp~~~~~~~~~~~~~~~~~~~~~~ 195 (253)
...+++-+++.++..++.+-+.... +...++..|+.- +..+ +.-..--++..+.++++++| ++.-+...
T Consensus 618 ~e~vl~i~~~e~idgVI~~~gg~~~~~la~~le~~Gi~i-------~G~s~~~i~~~~DK~~f~~lL~~~G-Ip~P~~~~ 689 (1050)
T TIGR01369 618 FEDVMNIIELEKPEGVIVQFGGQTPLNLAKALEEAGVPI-------LGTSPESIDRAEDREKFSELLDELG-IPQPKWKT 689 (1050)
T ss_pred HHHHHHHHhhcCCCEEEEccCcHhHHHHHHHHHHCCCcE-------ECCCHHHHHHHCCHHHHHHHHHHCC-cCCCCeEE
Confidence 3455555666666655544443321 223344445431 1111 11111334567788999999 98778777
Q ss_pred EcCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhh
Q 039449 196 IGDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 196 iGD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~ 249 (253)
+.+.. .-...+.+.|.+.+.=+.++... .+..++.|.+|+..++.+.
T Consensus 690 v~s~e-e~~~~~~~igyPvIVKP~~~~Gg------~gv~iv~~~eeL~~~l~~a 736 (1050)
T TIGR01369 690 ATSVE-EAVEFASEIGYPVLVRPSYVLGG------RAMEIVYNEEELRRYLEEA 736 (1050)
T ss_pred ECCHH-HHHHHHHhcCCCEEEEECCCCCC------CCeEEECCHHHHHHHHHHH
Confidence 76544 23345678899877655333221 2446888999998888764
No 493
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=24.18 E-value=3.3e+02 Score=20.87 Aligned_cols=95 Identities=18% Similarity=0.233 Sum_probs=49.9
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcc--hhhhhhhhcCCCCCcceeEeeeccccCccCCCHHHHHHHHHHhCCCCCCceE
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYR--YQDVILPALGVNQGTEWDFGVFSGLEGVEKPDPRIYEIALERAGNIAPEEAL 194 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~--~~~~~l~~~gl~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~~ 194 (253)
+...++++.+++.|++.+++-+..+. .++..++. .+ .|-..-.-...+. + -+......++++....++..+
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~---~~--~~l~msv~~~~g~-~-~~~~~~~~i~~lr~~~~~~~i 188 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL---SP--LFIYYGLRPATGV-P-LPVSVERNIKRVRNLVGNKYL 188 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh---CC--CEEEEEeCCCCCC-C-chHHHHHHHHHHHHhcCCCCE
Confidence 45678899999999998887777553 23333332 22 2211111111222 2 122222222222212223346
Q ss_pred EEcCCc--ccchhhhhhcCCeEEEEc
Q 039449 195 HIGDSF--RKDYVPAKSVGMHALLVD 218 (253)
Q Consensus 195 ~iGD~~--~~Di~~a~~~G~~~i~~~ 218 (253)
.+|=+. ..++..+.++|...+.+.
T Consensus 189 ~v~gGI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 189 VVGFGLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred EEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 666644 147777788999988875
No 494
>PF05240 APOBEC_C: APOBEC-like C-terminal domain; InterPro: IPR007904 This domain is found at the C terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. C to U RNA editing of mammalian apolipoprotein B (apoB) RNA is a site-specific posttranscriptional modification in which a single cytidine is enzymatically deaminated to uridine, thereby generating a UAA stop codon in the edited mRNA. The function of this domain is currently unknown.; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 2NYT_D.
Probab=24.10 E-value=62 Score=18.37 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=15.6
Q ss_pred ChHHHHHHHHHcCCEEEEEeCCC
Q 039449 118 DSQPFLRWAREKGLIVGIISNAE 140 (253)
Q Consensus 118 ~~~~~l~~l~~~g~~~~i~s~~~ 140 (253)
...+.|+.|.+.|.+|-|.+-..
T Consensus 3 ~~qegLr~L~~aG~~v~iM~~~e 25 (55)
T PF05240_consen 3 DYQEGLRRLCQAGAQVSIMTYSE 25 (55)
T ss_dssp HHHHHHHHHHHTT-EEEE--HHH
T ss_pred HHHHHHHHHHHCCCeEEecCcHH
Confidence 45678899999999998887543
No 495
>PRK13936 phosphoheptose isomerase; Provisional
Probab=24.06 E-value=1e+02 Score=22.75 Aligned_cols=29 Identities=10% Similarity=0.055 Sum_probs=23.0
Q ss_pred CChHHHHHHHHHcCCEEEEEeCCCcchhh
Q 039449 117 PDSQPFLRWAREKGLIVGIISNAEYRYQD 145 (253)
Q Consensus 117 ~~~~~~l~~l~~~g~~~~i~s~~~~~~~~ 145 (253)
+.+.+.++.++++|.+++.+|+.......
T Consensus 125 ~~~~~~~~~ak~~g~~iI~IT~~~~s~l~ 153 (197)
T PRK13936 125 ANVIQAIQAAHEREMHVVALTGRDGGKMA 153 (197)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCCCChhh
Confidence 45778888999999999999997765433
No 496
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=24.03 E-value=96 Score=20.90 Aligned_cols=36 Identities=11% Similarity=0.045 Sum_probs=24.9
Q ss_pred hHHHHHHHHHcCCEEEEEeCCCcchhhhhhhhcCCC
Q 039449 119 SQPFLRWAREKGLIVGIISNAEYRYQDVILPALGVN 154 (253)
Q Consensus 119 ~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~ 154 (253)
..++.+.+++.|+.++.+|..+...+...++..++.
T Consensus 46 l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~ 81 (140)
T cd03017 46 FRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLP 81 (140)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC
Confidence 345556666678888888877776667677766653
No 497
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=23.92 E-value=6.8e+02 Score=24.39 Aligned_cols=115 Identities=13% Similarity=0.050 Sum_probs=65.7
Q ss_pred HHHHHHHHHcCCEEEEEeCCCcch--hhhhhhhcCCCCCcceeEeeecc-ccCccCCCHHHHHHHHHHhCCCCCCceEEE
Q 039449 120 QPFLRWAREKGLIVGIISNAEYRY--QDVILPALGVNQGTEWDFGVFSG-LEGVEKPDPRIYEIALERAGNIAPEEALHI 196 (253)
Q Consensus 120 ~~~l~~l~~~g~~~~i~s~~~~~~--~~~~l~~~gl~~~~~f~~~~~~~-~~~~~kp~~~~~~~~~~~~~~~~~~~~~~i 196 (253)
..+++-+++.+...++.+-+.... ....++..|+.- +..+ ..-..--++..+.++++++| ++.-....+
T Consensus 619 e~v~~i~~~e~~dgVi~~~g~~~~~~la~~le~~Gi~i-------lg~s~~ai~~~~DK~~~~~~L~~~G-Ip~P~~~~~ 690 (1066)
T PRK05294 619 EDVLEIIEKEKPKGVIVQFGGQTPLKLAKALEAAGVPI-------LGTSPDAIDLAEDRERFSKLLEKLG-IPQPPNGTA 690 (1066)
T ss_pred HHHHHHHHHcCCCEEEEEeCchhHHHHHHHHHHCCCce-------eCCCHHHHHHhCCHHHHHHHHHHcC-cCCCCeEEE
Confidence 344555555655545544333222 223444555432 1111 11111235567788999999 988788887
Q ss_pred cCCcccchhhhhhcCCeEEEEcCCCCCChhhhhhcCCcccCCHHHHHHHHhhh
Q 039449 197 GDSFRKDYVPAKSVGMHALLVDRFKTPDAKEWRKSGAIVLPDLVAVKEFLTSE 249 (253)
Q Consensus 197 GD~~~~Di~~a~~~G~~~i~~~~~~~~~~~~~~~~~~~~i~~l~el~~~l~~~ 249 (253)
.+.. .-...+.+.|.+.+.=+..+.. ..+..++.|-+|+..++.+.
T Consensus 691 ~s~e-e~~~~~~~igyPvvVKP~~~~G------g~Gv~iv~~~eeL~~~~~~a 736 (1066)
T PRK05294 691 TSVE-EALEVAEEIGYPVLVRPSYVLG------GRAMEIVYDEEELERYMREA 736 (1066)
T ss_pred CCHH-HHHHHHHhcCCCeEEEeCCCCC------CCcEEEECCHHHHHHHHHHH
Confidence 6554 3445677889887665433322 12446888999998887754
No 498
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=23.80 E-value=2.8e+02 Score=20.12 Aligned_cols=24 Identities=13% Similarity=-0.104 Sum_probs=14.3
Q ss_pred hHHHHHHHHH-cCCEEEEEeCCCcc
Q 039449 119 SQPFLRWARE-KGLIVGIISNAEYR 142 (253)
Q Consensus 119 ~~~~l~~l~~-~g~~~~i~s~~~~~ 142 (253)
++..+....+ -|-++.-.|.+++.
T Consensus 12 A~ravE~aa~~iGgRCIS~S~GNPT 36 (180)
T PF14097_consen 12 AKRAVEIAAKNIGGRCISQSAGNPT 36 (180)
T ss_pred HHHHHHHHHHHhCcEEEeccCCCCC
Confidence 3445555544 47777777776654
No 499
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=23.74 E-value=1.1e+02 Score=24.92 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=20.9
Q ss_pred cCCChHHHHHHHHHcCCEEEEEeCC
Q 039449 115 VFPDSQPFLRWAREKGLIVGIISNA 139 (253)
Q Consensus 115 ~~~~~~~~l~~l~~~g~~~~i~s~~ 139 (253)
-+|+..+++++|+++|+++++..+-
T Consensus 83 ~FPdp~~mi~~Lh~~G~kv~l~v~P 107 (340)
T cd06597 83 RWPNPKGMIDELHEQGVKVLLWQIP 107 (340)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEecC
Confidence 4689999999999999999765444
No 500
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=23.71 E-value=1.1e+02 Score=24.41 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=21.9
Q ss_pred ccCCChHHHHHHHHHcCCEEEEEeC
Q 039449 114 TVFPDSQPFLRWAREKGLIVGIISN 138 (253)
Q Consensus 114 ~~~~~~~~~l~~l~~~g~~~~i~s~ 138 (253)
.-+|+..+++++|+++|+++++..+
T Consensus 63 ~~FPd~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 63 DRFPDPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred ccCCCHHHHHHHHHHCCCeEEEEec
Confidence 4679999999999999999988765
Done!