BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039451
(344 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 118/300 (39%), Positives = 173/300 (57%), Gaps = 4/300 (1%)
Query: 27 LALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFH 86
L + +YN++CP ++QQ + + A G++R+ HDC V GCDASVL+ S A +
Sbjct: 2 LQIGFYNTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTANN 61
Query: 87 KSERDADVNLP-LPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
+E+DA N P L G F+++T AK+A+E CP VSC+DI++ A R+ + G Y+V
Sbjct: 62 TAEKDAIPNNPSLRG--FEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQV 119
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEF 205
GR+D VS AS IP+ + +Q+I+ F +K L+ EMV L G H+IG AHC F
Sbjct: 120 PSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSF 179
Query: 206 ADRIFNFSKTSQSDPAMNPQYADRLRKLC-ENYTKQPEMSAFIDVFTPGKFDNMYYKNLK 264
+R++NF+ S DP ++P YA LR C N T+ ++ +D+ TP DNMYY ++
Sbjct: 180 TNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTPITVSLDIITPSVLDNMYYTGVQ 239
Query: 265 HGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRC 324
LGLL +DQ + + V A N TA+ FA AM K+G + G GE+R C
Sbjct: 240 LTLGLLTSDQALVTEANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEIRTNC 299
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 222 bits (565), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 117/303 (38%), Positives = 175/303 (57%), Gaps = 4/303 (1%)
Query: 26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
QL +Y+ TCP I++ I S A ++RL HDC V+GCDAS+L+
Sbjct: 2 QLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGS 61
Query: 86 HKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
+SE++A N+ F++V KTALE CPGVVSCSD++++A+ + + GGP + V
Sbjct: 62 IQSEKNAGPNVN-SARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTV 120
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEF 205
LLGR+DS+ ++ + +IP+ SLS I F + GL+ ++VAL G HT G A C F
Sbjct: 121 LLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVF 180
Query: 206 ADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKH 265
+R+FNFS T DP +N L++LC ++ +D+ TP FDN Y+ NL+
Sbjct: 181 NNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITN-LDLSTPDAFDNNYFANLQS 239
Query: 266 GLGLLQTDQDI--AVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHR 323
GLLQ+DQ++ T V +A+N+T FFQAFA +M +G + G++GE+R
Sbjct: 240 NDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLD 299
Query: 324 CHE 326
C +
Sbjct: 300 CKK 302
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 209 bits (533), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 14/308 (4%)
Query: 26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
QL +Y+++CP I++ I ++ S P AA +LRL HDC V+GCDAS+L+ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 86 HKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
++E+DA N F ++ R K A+E CP VSC+D++++A + + + GGP ++V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLS-VQEMVALVGGHTIGFAHCKE 204
LGR+DS+ + N+P +L Q+ D F + GL+ ++VAL GGHT G C+
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRS 180
Query: 205 FADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFI--DVFTPGKFDNMYYKN 262
DR++NFS T DP +N Y LR LC +SA + D+ TP FDN YY N
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVN 237
Query: 263 LKHGLGLLQTDQDI-----AVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGND 317
L+ GL+Q+DQ++ A D T P V +A + FF AF AM+++G G
Sbjct: 238 LEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQ 295
Query: 318 GEVRHRCH 325
G++R C
Sbjct: 296 GQIRLNCR 303
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 14/308 (4%)
Query: 26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
QL +Y+++CP I++ I ++ S P AA +LRL HDC V+GCDAS+L+ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 86 HKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
++E+DA N F ++ R K A+E CP VSC+D++++A + + + GGP ++V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLS-VQEMVALVGGHTIGFAHCKE 204
LGR+DS+ + N+P +L Q+ D F + GL+ ++VAL GGHT G C+
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 205 FADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFI--DVFTPGKFDNMYYKN 262
DR++NFS T DP +N Y LR LC +SA + D+ TP FDN YY N
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVN 237
Query: 263 LKHGLGLLQTDQDI-----AVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGND 317
L+ GL+Q+DQ++ A D T P V +A + FF AF AM+++G G
Sbjct: 238 LEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQ 295
Query: 318 GEVRHRCH 325
G++R C
Sbjct: 296 GQIRLNCR 303
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 14/308 (4%)
Query: 26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
QL +Y+++CP I++ I ++ S P AA +LRL HDC V+GCDAS+L+ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 86 HKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
++E+DA N F ++ R K A+E CP VSC+D++++A + + + GGP ++V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLS-VQEMVALVGGHTIGFAHCKE 204
LGR+DS+ + N+P +L Q+ D F + GL+ ++VAL GGHT G C+
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 205 FADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFI--DVFTPGKFDNMYYKN 262
DR++NFS T DP +N Y LR LC +SA + D+ TP FDN YY N
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDMDLRTPTIFDNKYYVN 237
Query: 263 LKHGLGLLQTDQDI-----AVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGND 317
L+ GL+Q+DQ++ A D T P V +A + FF AF AM+++G G
Sbjct: 238 LEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQ 295
Query: 318 GEVRHRCH 325
G++R C
Sbjct: 296 GQIRLNCR 303
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 14/308 (4%)
Query: 26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
QL +Y+++CP I++ I ++ S P AA +LRL HDC V+GCDAS+L+ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 86 HKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
++E+DA N F ++ R K A+E CP VSC+D++++A + + + GGP ++V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLS-VQEMVALVGGHTIGFAHCKE 204
LGR+DS+ + N+P +L Q+ D F + GL+ ++VAL GGHT G C+
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRF 179
Query: 205 FADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFI--DVFTPGKFDNMYYKN 262
DR++NFS T DP +N Y LR LC +SA + D+ TP FDN YY N
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVN 236
Query: 263 LKHGLGLLQTDQDI-----AVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGND 317
L+ GL+Q+DQ++ A D T P V +A + FF AF AM+++G G
Sbjct: 237 LEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQ 294
Query: 318 GEVRHRCH 325
G++R C
Sbjct: 295 GQIRLNCR 302
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 208 bits (530), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 14/308 (4%)
Query: 26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
QL +Y+++CP I++ I ++ S P AA +LRL HDC V+GCDAS+L+ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 86 HKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
++E+DA N F ++ R K A+E CP VSC+D++++A + + + GGP ++V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLS-VQEMVALVGGHTIGFAHCKE 204
LGR+DS+ + N+P +L Q+ D F + GL+ ++VAL GGHT G C+
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 205 FADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFI--DVFTPGKFDNMYYKN 262
DR++NFS T DP +N Y LR LC +SA + D+ TP FDN YY N
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVN 236
Query: 263 LKHGLGLLQTDQDI-----AVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGND 317
L+ GL+Q+DQ++ A D T P V +A + FF AF AM+++G G
Sbjct: 237 LEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQ 294
Query: 318 GEVRHRCH 325
G++R C
Sbjct: 295 GQIRLNCR 302
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 14/308 (4%)
Query: 26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
QL +Y+++CP I++ I ++ S P AA +LRL HDC V+GCDAS+L+ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 86 HKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
++E+DA N F ++ R K A+E CP VSC+D++++A + + + GGP ++V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLS-VQEMVALVGGHTIGFAHCKE 204
LGR+DS+ + N+P +L Q+ D F + GL+ ++VAL GGHT G C+
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 205 FADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFI--DVFTPGKFDNMYYKN 262
DR++NFS T DP +N Y LR LC +SA + D+ TP FDN YY N
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVN 236
Query: 263 LKHGLGLLQTDQDI-----AVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGND 317
L+ GL+Q+DQ++ A D T P V +A + FF AF AM+++G G
Sbjct: 237 LEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQ 294
Query: 318 GEVRHRCH 325
G++R C
Sbjct: 295 GQIRLNCR 302
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 208 bits (529), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 14/308 (4%)
Query: 26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
QL +Y+++CP I++ I ++ S P AA +LRL HDC V+GCDAS+L+ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 86 HKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
++E+DA N F ++ R K A+E CP VSC+D++++A + + + GGP ++V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLS-VQEMVALVGGHTIGFAHCKE 204
LGR+DS+ + N+P +L Q+ D F + GL+ ++VAL GGHT G C+
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 205 FADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFI--DVFTPGKFDNMYYKN 262
DR++NFS T DP +N Y LR LC +SA + D+ TP FDN YY N
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVN 236
Query: 263 LKHGLGLLQTDQDI-----AVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGND 317
L+ GL+Q+DQ++ A D T P V +A + FF AF AM+++G G
Sbjct: 237 LEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQ 294
Query: 318 GEVRHRCH 325
G++R C
Sbjct: 295 GQIRLNCR 302
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 207 bits (528), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 14/308 (4%)
Query: 26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
QL +Y+++CP I++ I ++ S P AA +LRL HDC V+GCDAS+L+ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 86 HKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
++E+DA N F ++ R K A+E CP VSC+D++++A + + + GGP ++V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLS-VQEMVALVGGHTIGFAHCKE 204
LGR+DS+ + N+P +L Q+ D F + GL+ ++VAL GGHT G C+
Sbjct: 121 PLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 205 FADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFI--DVFTPGKFDNMYYKN 262
DR++NFS T DP +N Y LR LC +SA + D+ TP FDN YY N
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVN 237
Query: 263 LKHGLGLLQTDQDI-----AVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGND 317
L+ GL+Q+DQ++ A D T P V +A + FF AF AM+++G G
Sbjct: 238 LEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQ 295
Query: 318 GEVRHRCH 325
G++R C
Sbjct: 296 GQIRLNCR 303
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 207 bits (528), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 172/308 (55%), Gaps = 14/308 (4%)
Query: 26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
QL +Y+++CP I++ I ++ S P AA +LRL HDC V+GCDAS+L+ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 86 HKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
++E+DA N F ++ R K A+E CP VSC+D++++A + + + GGP ++V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLS-VQEMVALVGGHTIGFAHCKE 204
LGR+DS+ + N+P +L Q+ D F + GL+ ++VAL GGHT G C+
Sbjct: 121 PLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 205 FADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFI--DVFTPGKFDNMYYKN 262
DR++NFS T DP +N Y LR LC +SA + D+ TP FDN YY N
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVN 237
Query: 263 LKHGLGLLQTDQDI-----AVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGND 317
L+ GL+Q+DQ++ A D T P V +A + FF AF AM+++G G
Sbjct: 238 LEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQ 295
Query: 318 GEVRHRCH 325
G++R C
Sbjct: 296 GQIRLNCR 303
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 207 bits (526), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 172/308 (55%), Gaps = 14/308 (4%)
Query: 26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
QL +Y+++CP I++ I ++ S P AA +LRL HDC V+GCDAS+L+ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 86 HKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
++E+DA N F ++ R K A+E CP VSC+D++++A + + + GGP ++V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLS-VQEMVALVGGHTIGFAHCKE 204
LGR+DS+ + N+P +L Q+ D F + GL+ ++VAL GGH+ G C+
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRF 179
Query: 205 FADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFI--DVFTPGKFDNMYYKN 262
DR++NFS T DP +N Y LR LC +SA + D+ TP FDN YY N
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVN 236
Query: 263 LKHGLGLLQTDQDI-----AVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGND 317
L+ GL+Q+DQ++ A D T P V +A + FF AF AM+++G G
Sbjct: 237 LEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQ 294
Query: 318 GEVRHRCH 325
G++R C
Sbjct: 295 GQIRLNCR 302
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 113/308 (36%), Positives = 171/308 (55%), Gaps = 14/308 (4%)
Query: 26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
QL +Y+++CP I++ I ++ S P AA +LRL DC V+GCDAS+L+ +
Sbjct: 2 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 86 HKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
++E+DA N F ++ R K A+E CP VSC+D++++A + + + GGP ++V
Sbjct: 62 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLS-VQEMVALVGGHTIGFAHCKE 204
LGR+DS+ + N+P +L Q+ D F + GL+ ++VAL GGHT G C+
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 180
Query: 205 FADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFI--DVFTPGKFDNMYYKN 262
DR++NFS T DP +N Y LR LC +SA + D+ TP FDN YY N
Sbjct: 181 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVN 237
Query: 263 LKHGLGLLQTDQDI-----AVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGND 317
L+ GL+Q+DQ++ A D T P V +A + FF AF AM+++G G
Sbjct: 238 LEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQ 295
Query: 318 GEVRHRCH 325
G++R C
Sbjct: 296 GQIRLNCR 303
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 112/308 (36%), Positives = 170/308 (55%), Gaps = 14/308 (4%)
Query: 26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
QL +Y+++CP I++ I ++ S P AA +L L DC V+GCDAS+L+ +
Sbjct: 1 QLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 86 HKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
++E+DA N F ++ R K A+E CP VSC+D++++A + + + GGP ++V
Sbjct: 61 FRTEKDAFGNAN-SARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLS-VQEMVALVGGHTIGFAHCKE 204
LGR+DS+ + N+P +L Q+ D F + GL+ ++VAL GGHT G C+
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRF 179
Query: 205 FADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFI--DVFTPGKFDNMYYKN 262
DR++NFS T DP +N Y LR LC +SA + D+ TP FDN YY N
Sbjct: 180 IMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRTPTIFDNKYYVN 236
Query: 263 LKHGLGLLQTDQDI-----AVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGND 317
L+ GL+Q+DQ++ A D T P V +A + FF AF AM+++G G
Sbjct: 237 LEEQKGLIQSDQELFSSPNATD--TIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQ 294
Query: 318 GEVRHRCH 325
G++R C
Sbjct: 295 GQIRLNCR 302
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 201 bits (510), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 171/302 (56%), Gaps = 4/302 (1%)
Query: 27 LALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFH 86
L +Y TCP +++ ++ S A ++RL HDC V GCDAS+L+ ++
Sbjct: 4 LNATFYAGTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 87 KSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVL 146
SE++A N F++V KTALE CPGVVSC+D++++A++ + + GGP + V
Sbjct: 64 ISEKNAGPNAN-SARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVD 122
Query: 147 LGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEFA 206
LGR+D++ ++ + +IP+ LS I F + GL+ ++VAL G HT G A C F+
Sbjct: 123 LGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFS 182
Query: 207 DRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKHG 266
+R+FNFS DP +N L++LC + S +D+ TP FDN Y+ NL+
Sbjct: 183 NRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRG-SGSTNLDLSTPDAFDNNYFTNLQSN 241
Query: 267 LGLLQTDQDI--AVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRC 324
GLLQ+DQ++ T V +A+N+T FFQAFA +M +G + G+ GE+R C
Sbjct: 242 NGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSGEIRLDC 301
Query: 325 HE 326
+
Sbjct: 302 KK 303
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/300 (37%), Positives = 172/300 (57%), Gaps = 9/300 (3%)
Query: 27 LALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFH 86
L+ ++Y TCP+ I+++ + + AAG+LRL HDC V GCDASVL+ +A
Sbjct: 9 LSFDFYWQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATG 68
Query: 87 KSERDADVNLPLPGDAFDLVTRAKTALELQCPG-VVSCSDIISVATRNLLVMVGGPHYKV 145
E+ A NL L AF V + LE +C G VVSCSDI+++A R+ +V+ GGP Y+V
Sbjct: 69 PGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDYRV 128
Query: 146 LLGRKDS-IVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKE 204
LGR+DS + V ++P + ++ ++ + G GL ++V + GGHTIG AHC
Sbjct: 129 PLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCSS 188
Query: 205 FADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLK 264
F DR+F + DP ++P + RL++ C K + +DV TP FDN YY +L
Sbjct: 189 FEDRLF-----PRPDPTISPTFLSRLKRTCP--AKGTDRRTVLDVRTPNVFDNKYYIDLV 241
Query: 265 HGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRC 324
+ GL +DQD+ + T+P V+ +A ++ FF+ F ++ K+G ++ + GEVR C
Sbjct: 242 NREGLFVSDQDLFTNAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRVRTSDQGEVRRNC 301
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 199 bits (506), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 160/301 (53%), Gaps = 11/301 (3%)
Query: 27 LALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFH 86
L+ N+Y + CP ++ + A +LRL HDC V GCDASVL+ +
Sbjct: 2 LSSNFYATKCPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSNF 61
Query: 87 KSERDADVNL-PLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
E+ A N + G F+++ K+ +E CPGVVSC+DI++VA R+ +V +GG + V
Sbjct: 62 TGEKTAGPNANSIRG--FEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNV 119
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEF 205
LLGR+DS + S ++P +LS +I F +KG + +E+V L G HTIG A C F
Sbjct: 120 LLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAF 179
Query: 206 ADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKH 265
RI+N S ++P YA L+ C + +S F DV TP KFDN YY NL++
Sbjct: 180 RTRIYNESN-------IDPTYAKSLQANCPSVGGDTNLSPF-DVTTPNKFDNAYYINLRN 231
Query: 266 GLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRCH 325
GLL +DQ + T V Y+ N F F NAM K+G + G G++R C
Sbjct: 232 KKGLLHSDQQLFNGVSTDSQVTAYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQIRTNCR 291
Query: 326 E 326
+
Sbjct: 292 K 292
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 199 bits (505), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 172/303 (56%), Gaps = 6/303 (1%)
Query: 26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
QL +Y TCP I+ VI D + P A ++RL HDC V GCD SVL+ +
Sbjct: 1 QLTPTFYRETCPNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 86 HKSERDADVNL-PLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYK 144
+SE+DA N+ + G D+V KTA+E CP VSC+DI+++A V+ GGP +
Sbjct: 61 IESEQDALPNINSIRG--LDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWP 118
Query: 145 VLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKE 204
V LGR+DS+ ++ + N+P +L+Q+ F +GL+ ++V L GGHT G A C
Sbjct: 119 VPLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCST 178
Query: 205 FADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLK 264
F +R++NFS T DP +N Y + LR C ++ +D+ TP +FDN YY NL
Sbjct: 179 FINRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTN-LDLSTPDQFDNRYYSNLL 237
Query: 265 HGLGLLQTDQDI--AVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRH 322
GLLQ+DQ++ T P V+ +++N+ FF F +M K+G + G++GE+R
Sbjct: 238 QLNGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRL 297
Query: 323 RCH 325
+C+
Sbjct: 298 QCN 300
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 189 bits (479), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 111/309 (35%), Positives = 173/309 (55%), Gaps = 14/309 (4%)
Query: 26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAF 85
QL+ + Y +CP I+++ + + AA ++RL HDC V+GCDAS+L+
Sbjct: 1 QLSPDIYAKSCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDG--- 57
Query: 86 HKSERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKV 145
SE+ A N+ F+++ K A+E CPGVVSC+DI+++A R+ +V+ GGP ++V
Sbjct: 58 ADSEKLAIPNIN-SARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRV 116
Query: 146 LLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFAHCKEF 205
LGRKD +V++ + N+P+ L II F + L++ ++VAL G HT G A C F
Sbjct: 117 ALGRKDGLVANQNSAN-NLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVF 175
Query: 206 ADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKH 265
++R+FNF+ D + L+ +C ++A +D T FDN Y+KNL
Sbjct: 176 SNRLFNFTGAGNPDATLETSLLSNLQTVCP-LGGNSNITAPLDRSTTDTFDNNYFKNLLE 234
Query: 266 GLGLLQTDQ-----DIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEV 320
G GLL +DQ D+AV+ TK V+ Y+ +++ FF+ F AM ++G N+ G GEV
Sbjct: 235 GKGLLSSDQILFSSDLAVN-TTKKLVEAYSRSQSLFFRDFTCAMIRMG--NISNGASGEV 291
Query: 321 RHRCHEFTN 329
R C N
Sbjct: 292 RTNCRVINN 300
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 50/214 (23%)
Query: 101 DAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHV 160
+ D+ R L+ + P ++S +D +A + + GGP GR+D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP--- 138
Query: 161 QGNIPTTNLSLSQIIDVFG-SKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSD 219
+G +P + DVFG + GL+ Q++VAL GGHTIG AH
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHK----------------- 181
Query: 220 PAMNPQYADRLRKLCENYTKQPEMSAFIDVFT--PGKFDNMYYKNL----KHGLGLLQTD 273
E S F +T P FDN Y+ L K GL L +D
Sbjct: 182 ----------------------EASGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 274 QDIAVDGRTKPFVDLYAANETAFFQAFANAMEKL 307
+ + D +P VD YAA+E AFF +A A +KL
Sbjct: 220 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 50/214 (23%)
Query: 101 DAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHV 160
+ D+ R L+ + P ++S +D +A + + GGP GR+D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP--- 138
Query: 161 QGNIPTTNLSLSQIIDVFG-SKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSD 219
+G +P + DVFG + GL+ Q++VAL GGHTIG AH
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHK----------------- 181
Query: 220 PAMNPQYADRLRKLCENYTKQPEMSAFIDVFT--PGKFDNMYYKNL----KHGLGLLQTD 273
E S F +T P FDN Y+ L K GL L +D
Sbjct: 182 ----------------------ERSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 274 QDIAVDGRTKPFVDLYAANETAFFQAFANAMEKL 307
+ + D +P VD YAA+E AFF +A A +KL
Sbjct: 220 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 50/214 (23%)
Query: 101 DAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHV 160
+ D+ R L+ + P ++S +D +A + + GGP GR+D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP--- 138
Query: 161 QGNIPTTNLSLSQIIDVFG-SKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSD 219
+G +P + DVFG + GL+ Q++VAL GGHTIG AH
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHK----------------- 181
Query: 220 PAMNPQYADRLRKLCENYTKQPEMSAFIDVFT--PGKFDNMYYKNL----KHGLGLLQTD 273
E S F +T P FDN Y+ L K GL L +D
Sbjct: 182 ----------------------ERSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 274 QDIAVDGRTKPFVDLYAANETAFFQAFANAMEKL 307
+ + D +P VD YAA+E AFF +A A +KL
Sbjct: 220 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 50/214 (23%)
Query: 101 DAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHV 160
+ D+ R L+ + P ++S +D +A + + GGP GR+D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP--- 138
Query: 161 QGNIPTTNLSLSQIIDVFG-SKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSD 219
+G +P + DVFG + GL+ Q++VAL GGHTIG AH
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHK----------------- 181
Query: 220 PAMNPQYADRLRKLCENYTKQPEMSAFIDVFT--PGKFDNMYYKNL----KHGLGLLQTD 273
E S F +T P FDN Y+ L K GL L +D
Sbjct: 182 ----------------------ERSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 274 QDIAVDGRTKPFVDLYAANETAFFQAFANAMEKL 307
+ + D +P VD YAA+E AFF +A A +KL
Sbjct: 220 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 50/214 (23%)
Query: 101 DAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHV 160
+ D+ R L+ + P ++S +D +A + + GGP GR+D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP--- 138
Query: 161 QGNIPTTNLSLSQIIDVFG-SKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSD 219
+G +P + DVFG + GL+ Q++VAL GGHTIG AH
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHK----------------- 181
Query: 220 PAMNPQYADRLRKLCENYTKQPEMSAFIDVFT--PGKFDNMYYKNL----KHGLGLLQTD 273
E S F +T P FDN Y+ L K GL L +D
Sbjct: 182 ----------------------ERSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 274 QDIAVDGRTKPFVDLYAANETAFFQAFANAMEKL 307
+ + D +P VD YAA+E AFF +A A +KL
Sbjct: 220 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 50/214 (23%)
Query: 101 DAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHV 160
+ D+ R L+ + P ++S +D +A + + GGP GR+D
Sbjct: 71 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP--- 126
Query: 161 QGNIPTTNLSLSQIIDVFG-SKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSD 219
+G +P + DVFG + GL+ Q++VAL GGHTIG AH
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHK----------------- 169
Query: 220 PAMNPQYADRLRKLCENYTKQPEMSAFIDVFT--PGKFDNMYYKNL----KHGLGLLQTD 273
E S F +T P FDN Y+ L K GL L +D
Sbjct: 170 ----------------------ERSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 207
Query: 274 QDIAVDGRTKPFVDLYAANETAFFQAFANAMEKL 307
+ + D +P VD YAA+E AFF +A A +KL
Sbjct: 208 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 241
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 50/214 (23%)
Query: 101 DAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHV 160
+ D+ R L+ + P ++S +D +A + + GGP GR+D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP--- 138
Query: 161 QGNIPTTNLSLSQIIDVFG-SKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSD 219
+G +P + DVFG + GL+ Q++VAL GGHTIG AH
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHK----------------- 181
Query: 220 PAMNPQYADRLRKLCENYTKQPEMSAFIDVFT--PGKFDNMYYKNL----KHGLGLLQTD 273
E S F +T P FDN Y+ L K GL L +D
Sbjct: 182 ----------------------ERSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 274 QDIAVDGRTKPFVDLYAANETAFFQAFANAMEKL 307
+ + D +P VD YAA+E AFF +A A +KL
Sbjct: 220 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 50/214 (23%)
Query: 101 DAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHV 160
+ D+ R L+ + P ++S +D +A + + GGP GR+D
Sbjct: 71 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP--- 126
Query: 161 QGNIPTTNLSLSQIIDVFG-SKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSD 219
+G +P + DVFG + GL+ Q++VAL GGHTIG AH
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHK----------------- 169
Query: 220 PAMNPQYADRLRKLCENYTKQPEMSAFIDVFT--PGKFDNMYYKNL----KHGLGLLQTD 273
E S F +T P FDN Y+ L K GL L +D
Sbjct: 170 ----------------------ERSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 207
Query: 274 QDIAVDGRTKPFVDLYAANETAFFQAFANAMEKL 307
+ + D +P VD YAA+E AFF +A A +KL
Sbjct: 208 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 241
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 50/214 (23%)
Query: 101 DAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHV 160
+ D+ R L+ + P ++S +D +A + + GGP GR+D
Sbjct: 83 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP--- 138
Query: 161 QGNIPTTNLSLSQIIDVFG-SKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSD 219
+G +P + DVFG + GL+ Q++VAL GGHTIG AH
Sbjct: 139 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHK----------------- 181
Query: 220 PAMNPQYADRLRKLCENYTKQPEMSAFIDVFT--PGKFDNMYYKNL----KHGLGLLQTD 273
E S F +T P FDN Y+ L K GL L +D
Sbjct: 182 ----------------------ERSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 219
Query: 274 QDIAVDGRTKPFVDLYAANETAFFQAFANAMEKL 307
+ + D +P VD YAA+E AFF +A A +KL
Sbjct: 220 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 253
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 50/214 (23%)
Query: 101 DAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHV 160
+ D+ R L+ + P ++S +D +A + + GGP GR+D
Sbjct: 71 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP--- 126
Query: 161 QGNIPTTNLSLSQIIDVFG-SKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSD 219
+G +P + DVFG + GL+ Q++VAL GGHTIG AH
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHK----------------- 169
Query: 220 PAMNPQYADRLRKLCENYTKQPEMSAFIDVFT--PGKFDNMYYKNL----KHGLGLLQTD 273
E S F +T P FDN Y+ L K GL L +D
Sbjct: 170 ----------------------ERSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 207
Query: 274 QDIAVDGRTKPFVDLYAANETAFFQAFANAMEKL 307
+ + D +P VD YAA+E AFF +A A +KL
Sbjct: 208 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 241
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 50/214 (23%)
Query: 101 DAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHV 160
+ D+ R L+ + P ++S +D +A + + GGP GR+D
Sbjct: 71 NGLDIAVRLLEPLKAEFP-ILSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPP--- 126
Query: 161 QGNIPTTNLSLSQIIDVFG-SKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSD 219
+G +P + DVFG + GL+ Q++VAL GGHTIG AH
Sbjct: 127 EGRLPDATKGSDHLRDVFGKAMGLTDQDIVALSGGHTIGAAHK----------------- 169
Query: 220 PAMNPQYADRLRKLCENYTKQPEMSAFIDVFT--PGKFDNMYYKNL----KHGLGLLQTD 273
E S F +T P FDN Y+ L K GL L +D
Sbjct: 170 ----------------------ERSGFEGPWTSNPLIFDNSYFTELLSGEKEGLLQLPSD 207
Query: 274 QDIAVDGRTKPFVDLYAANETAFFQAFANAMEKL 307
+ + D +P VD YAA+E AFF +A A +KL
Sbjct: 208 KALLSDPVFRPLVDKYAADEDAFFADYAEAHQKL 241
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 104/256 (40%), Gaps = 58/256 (22%)
Query: 61 VLRLFLHDCLVDGCDASVLITSNAF----HKSERDADVNLPLPGDAFDLVTRAKTALELQ 116
+LRL H G S T F H++E N + D+ R ++ Q
Sbjct: 35 ILRLAWHSA---GTFDSKTKTGGPFGTIKHQAELAHGAN-----NGLDIAVRLLEPIKEQ 86
Query: 117 CPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIID 176
P +VS +D +A + + GGP GR+D +G +P + D
Sbjct: 87 FP-IVSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPP---EGRLPDATKGSDHLRD 142
Query: 177 VFG-SKGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCE 235
VFG + GLS Q++VAL GGHTIG AH KE + F S+P +
Sbjct: 143 VFGKAMGLSDQDIVALSGGHTIGAAH-KERS----GFEGPWTSNPLI------------- 184
Query: 236 NYTKQPEMSAFIDVFTPGKFDNMYYKNL----KHGLGLLQTDQDIAVDGRTKPFVDLYAA 291
FDN Y+ L K GL L +D+ + D +P V+ YAA
Sbjct: 185 -------------------FDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAA 225
Query: 292 NETAFFQAFANAMEKL 307
+E FF +A A KL
Sbjct: 226 DEDVFFADYAEAHLKL 241
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 80/195 (41%), Gaps = 31/195 (15%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLS--LSQIIDVF 178
V+ +D+ +A+ + GGP + GR D + +G +P + DVF
Sbjct: 87 VTYADLFQLASATAIEEAGGPKIPMKYGRVDVTEPEQCPEEGRLPDAGPPSPAQHLRDVF 146
Query: 179 GSKGLSVQEMVALVGGHTIGFAHCKE--FADRIFNFSKTSQSDPAMNPQYADRLRKLCEN 236
GL+ +E+VAL G HT+G + + ++K P A L
Sbjct: 147 YRMGLNDKEIVALSGAHTLGRSRPDRSGWGKPETKYTKDGPGAPGGQSWTAQWL------ 200
Query: 237 YTKQPEMSAFIDVFTPGKFDNMYYKNLKH----GLGLLQTDQDIAVDGRTKPFVDLYAAN 292
KFDN Y+K++K L +L TD + D K + + YAA+
Sbjct: 201 -----------------KFDNSYFKDIKERRDEDLLVLPTDAALFEDPSFKVYAEKYAAD 243
Query: 293 ETAFFQAFANAMEKL 307
AFF+ +A A KL
Sbjct: 244 PEAFFKDYAEAHAKL 258
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 45/233 (19%)
Query: 102 AFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQ 161
D+ +A L+ + P +S +D+ +A + +GGP GR D+
Sbjct: 68 GLDIPRKALETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPD 126
Query: 162 GNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIG------------FAHCKEFADRI 209
G +P + + S + +VF G + QE VAL+G HT G + H K D
Sbjct: 127 GRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNS 186
Query: 210 FNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGL 269
F F++ D +NP+ ++++ + TK L +
Sbjct: 187 F-FTQLLDEDWVLNPK-VEQMQLMDRATTK---------------------------LMM 217
Query: 270 LQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEK---LGVYNLKQGNDGE 319
L +D + +D + +V+LYA + F + FANA +K LG NL + E
Sbjct: 218 LPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELGTRNLHKAPASE 270
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 45/233 (19%)
Query: 102 AFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQ 161
D+ +A L+ + P +S +D+ +A + +GGP GR D+
Sbjct: 68 GLDIPRKALETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPD 126
Query: 162 GNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIG------------FAHCKEFADRI 209
G +P + + S + +VF G + QE VAL+G HT G + H K D
Sbjct: 127 GRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETHIEFSGYHGPWTHDKNGFDNS 186
Query: 210 FNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGL 269
F F++ D +NP+ ++++ + TK L +
Sbjct: 187 F-FTQLLDEDWVLNPK-VEQMQLMDRATTK---------------------------LMM 217
Query: 270 LQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEK---LGVYNLKQGNDGE 319
L +D + +D + +V+LYA + F + FANA +K LG NL + E
Sbjct: 218 LPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELGTRNLHKAPASE 270
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/229 (24%), Positives = 95/229 (41%), Gaps = 45/229 (19%)
Query: 102 AFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQ 161
D+ +A L+ + P +S +D+ +A + +GGP GR D+
Sbjct: 67 GLDIPRKALETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPD 125
Query: 162 GNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIG------------FAHCKEFADRI 209
G +P + + S + +VF G + QE VAL+G HT G + H K D
Sbjct: 126 GRLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEFSGYHGPWTHDKNGFDNS 185
Query: 210 FNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGL 269
F F++ D +NP+ ++++ + TK L +
Sbjct: 186 F-FTQLLDEDWVLNPK-VEQMQLMDRATTK---------------------------LMM 216
Query: 270 LQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEK---LGVYNLKQG 315
L +D + +D + +V+LYA + F + FANA +K LG NL +
Sbjct: 217 LPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELGTRNLHKA 265
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 25/190 (13%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADR---LRKLCENY 237
++ +E+VAL+G HT+G H K + + NP D L L E++
Sbjct: 161 LNMNDREVVALMGAHTLGKTHLK---------NSGYEGPWTANPNVFDNSFYLNLLNEDW 211
Query: 238 TKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFF 297
+ + N + K G +L TD + D + V YA ++ FF
Sbjct: 212 KLEKNDA------------NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFF 259
Query: 298 QAFANAMEKL 307
+ F+ A EKL
Sbjct: 260 KDFSKAFEKL 269
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 76/190 (40%), Gaps = 25/190 (13%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLR---KLCENY 237
++ +E+VAL+G HT+G H K + T+ ++ N Y + L KL +N
Sbjct: 161 LNMNDREVVALMGAHTLGKTHLKNSG---YEGPWTANNNVFDNSFYLNLLNEDWKLEKND 217
Query: 238 TKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFF 297
+ + K G +L TD + D + V YA ++ FF
Sbjct: 218 ANNEQWDS------------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFF 259
Query: 298 QAFANAMEKL 307
+ F+ A EKL
Sbjct: 260 KDFSKAFEKL 269
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 75/190 (39%), Gaps = 25/190 (13%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLR---KLCENY 237
++ +E+VAL+G HT+G H K + T+ ++ N Y + L KL +N
Sbjct: 161 LNMNDREVVALMGAHTLGKTHLKNSG---YEGPWTANNNVFDNSFYLNLLNEDWKLEKND 217
Query: 238 TKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFF 297
+ + K G L TD + D + V YA ++ FF
Sbjct: 218 ANNEQWDS------------------KSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFF 259
Query: 298 QAFANAMEKL 307
+ F+ A EKL
Sbjct: 260 KDFSKAFEKL 269
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 25/190 (13%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLR---KLCENY 237
++ +E+VAL+G H +G H K + + ++ N +Y + L KL +N
Sbjct: 158 LNMNDREVVALMGAHALGKTHLKNSG---YEGPWGAANNVFTNEKYLNLLNEDWKLEKND 214
Query: 238 TKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFF 297
+ + K G +L TD + D + V YA ++ FF
Sbjct: 215 ANNEQWDS------------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFF 256
Query: 298 QAFANAMEKL 307
+ F+ A EKL
Sbjct: 257 KDFSKAFEKL 266
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 27/191 (14%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDP--AMNPQYADR--LRKLCEN 236
++ +E+VAL+G H +G H K ++ P A N + + L L EN
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK----------RSGYEGPWGAANNVFTNEFYLNLLNEN 212
Query: 237 YTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAF 296
+ + + N + K G +L TD + D + V YA ++ F
Sbjct: 213 WKLEKNDA------------NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 260
Query: 297 FQAFANAMEKL 307
F+ F+ A EKL
Sbjct: 261 FKDFSKAFEKL 271
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 76/191 (39%), Gaps = 27/191 (14%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDP--AMNPQYADR--LRKLCEN 236
++ +E+VAL+G H +G H K ++ P A N + + L L EN
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK----------RSGYEGPWGAANNVFTNEFYLNLLNEN 210
Query: 237 YTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAF 296
+ + + N + K G +L TD + D + V YA ++ F
Sbjct: 211 WKLEKNDA------------NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 258
Query: 297 FQAFANAMEKL 307
F+ F+ A EKL
Sbjct: 259 FKDFSKAFEKL 269
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 23/189 (12%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADR--LRKLCENYT 238
++ +E+VAL+G H +G H K S A N + + L L EN+
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKN--------SGYEGPWGAANNVFTNEFYLNLLNENWK 212
Query: 239 KQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQ 298
+ + N + K G +L TD + D + V YA ++ FF+
Sbjct: 213 LEKNDA------------NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 299 AFANAMEKL 307
F+ A EKL
Sbjct: 261 DFSKAFEKL 269
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 201
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 202 GYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 262 FSKAFEKL 269
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 19/187 (10%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G HT+G H K + + D + + KL +N
Sbjct: 161 LNMNDREVVALMGAHTLGKTHLKNSGYEGPWDATNNVFDNSFYLNLLNEDWKLEKNDANN 220
Query: 241 PEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAF 300
+ + K G +L TD + D + V YA ++ FF+ F
Sbjct: 221 EQWDS------------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKDF 262
Query: 301 ANAMEKL 307
+ A EKL
Sbjct: 263 SKAFEKL 269
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 25/190 (13%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLR---KLCENY 237
++ +E+VAL+G H +G H K + + + ++ N Y + L KL +N
Sbjct: 163 LNMNDREVVALMGAHALGKTHLKNSG---YEGPQGAANNVFTNEFYLNLLNEDWKLEKND 219
Query: 238 TKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFF 297
+ + K G +L TD + D + V YA ++ FF
Sbjct: 220 ANNEQWDS------------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFF 261
Query: 298 QAFANAMEKL 307
+ F+ A EKL
Sbjct: 262 KDFSKAFEKL 271
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 74/190 (38%), Gaps = 25/190 (13%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLR---KLCENY 237
++ +E+VAL G HT+G H K + T+ ++ N Y + L KL +N
Sbjct: 161 LNMNDREVVALSGAHTLGKTHLKNSG---YEGPWTANNNVFDNSFYLNLLNEDWKLEKND 217
Query: 238 TKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFF 297
+ + K G L TD + D + V YA ++ FF
Sbjct: 218 ANNEQWDS------------------KSGYLQLPTDYSLIQDPKYLSIVKEYANDQDKFF 259
Query: 298 QAFANAMEKL 307
+ F+ A EKL
Sbjct: 260 KDFSKAFEKL 269
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 198
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 199 YYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 258
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 259 FSKAFEKL 266
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 75/190 (39%), Gaps = 25/190 (13%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLR---KLCENY 237
++ +E+VAL+G H +G H K + + + ++ N Y + L KL +N
Sbjct: 158 LNMNDREVVALMGAHALGKTHLKNSG---YEGPQGAANNVFTNEFYLNLLNEDWKLEKND 214
Query: 238 TKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFF 297
+ + K G +L TD + D + V YA ++ FF
Sbjct: 215 ANNEQWDS------------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFF 256
Query: 298 QAFANAMEKL 307
+ F+ A EKL
Sbjct: 257 KDFSKAFEKL 266
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNCFTNE 201
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 202 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 262 FSKAFEKL 269
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 203
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 204 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 263
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 264 FSKAFEKL 271
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 159
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 160 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 200
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 201 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 260
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 261 FSKAFEKL 268
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 201
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 202 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 262 FSKAFEKL 269
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 201
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 202 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 262 FSKAFEKL 269
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPFGAANNVFTNE 203
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 204 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 263
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 264 FSKAFEKL 271
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 27/190 (14%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLR---KLCENY 237
++ +E+VAL+G H +G H K + ++ N Y + L KL +N
Sbjct: 158 LNMNDREVVALMGAHALGKTHLKNSG-----YEGGGANNVFTNEFYLNLLNEDWKLEKND 212
Query: 238 TKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFF 297
+ + K G +L TD + D + V YA ++ FF
Sbjct: 213 ANNEQWDS------------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFF 254
Query: 298 QAFANAMEKL 307
+ F+ A EKL
Sbjct: 255 KDFSKAFEKL 264
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 201
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 202 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 262 FSKAFEKL 269
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 198
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 199 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 258
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 259 FSKAFEKL 266
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 198
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 199 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 258
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 259 FSKAFEKL 266
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 201
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 202 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 262 FSKAFEKL 269
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 203
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 204 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 263
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 264 FSKAFEKL 271
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 203
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 204 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 263
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 264 FSKAFEKL 271
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 203
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 204 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 263
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 264 FSKAFEKL 271
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 198
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 199 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 258
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 259 FSKAFEKL 266
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 27/190 (14%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 158
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLR---KLCENY 237
++ +E+VAL+G H +G H K + ++ N Y + L KL +N
Sbjct: 159 LNMNDREVVALMGAHALGKTHLKNSG-----YEGGGANNVFTNEFYLNLLNEDWKLEKND 213
Query: 238 TKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFF 297
+ + K G +L TD + D + V YA ++ FF
Sbjct: 214 ANNEQWDS------------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFF 255
Query: 298 QAFANAMEKL 307
+ F+ A EKL
Sbjct: 256 KDFSKAFEKL 265
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 163
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 164 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 204
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 205 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 264
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 265 FSKAFEKL 272
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 201
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 202 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 262 FSKAFEKL 269
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 73/190 (38%), Gaps = 27/190 (14%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 163
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLR---KLCENY 237
++ +E+VAL+G H +G H K + ++ N Y + L KL +N
Sbjct: 164 LNMNDREVVALMGAHALGKTHLKNSG-----YEGGGANNVFTNEFYLNLLNEDWKLEKND 218
Query: 238 TKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFF 297
+ + K G +L TD + D + V YA ++ FF
Sbjct: 219 ANNEQWDS------------------KSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFF 260
Query: 298 QAFANAMEKL 307
+ F+ A EKL
Sbjct: 261 KDFSKAFEKL 270
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 203
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 204 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 263
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 264 FSKAFEKL 271
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 201
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 202 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 262 FSKAFEKL 269
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 203
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 204 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 263
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 264 FSKAFEKL 271
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 27/191 (14%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 95 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 153
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDP--AMNPQYADR--LRKLCEN 236
++ +E+VAL+G H +G H K ++ P A N + + L L E+
Sbjct: 154 LNMNDREVVALMGAHALGKTHLK----------RSGYEGPFGAANNVFTNEFYLNLLNED 203
Query: 237 YTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAF 296
+ + + N + K G +L TD + D + V YA ++ F
Sbjct: 204 WKLEKNDA------------NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 251
Query: 297 FQAFANAMEKL 307
F+ F+ A EKL
Sbjct: 252 FKDFSKAFEKL 262
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 23/189 (12%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADR--LRKLCENYT 238
++ +E+VAL+G H +G H K S A N + + L L E++
Sbjct: 158 LNMNDREVVALMGAHALGKTHLKN--------SGYEGPGGAANNVFTNEFYLNLLNEDWK 209
Query: 239 KQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQ 298
+ + N + K G +L TD + D + V YA ++ FF+
Sbjct: 210 LEKNDA------------NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 257
Query: 299 AFANAMEKL 307
F+ A EKL
Sbjct: 258 DFSKAFEKL 266
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDMDKDAGYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 201
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 202 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 262 FSKAFEKL 269
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 23/189 (12%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 158
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADR--LRKLCENYT 238
++ +E+VAL+G H +G H K S A N + + L L E++
Sbjct: 159 LNMNDREVVALMGAHALGKTHLKN--------SGYEGPGGAANNVFTNEFYLNLLNEDWK 210
Query: 239 KQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQ 298
+ + N + K G +L TD + D + V YA ++ FF+
Sbjct: 211 LEKNDA------------NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 258
Query: 299 AFANAMEKL 307
F+ A EKL
Sbjct: 259 DFSKAFEKL 267
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 23/189 (12%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADR--LRKLCENYT 238
++ +E+VAL+G H +G H K S A N + + L L E++
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKN--------SGYEGPGGAANNVFTNEFYLNLLNEDWK 212
Query: 239 KQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQ 298
+ + N + K G +L TD + D + V YA ++ FF+
Sbjct: 213 LEKNDA------------NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 299 AFANAMEKL 307
F+ A EKL
Sbjct: 261 DFSKAFEKL 269
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 27/191 (14%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 157
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDP--AMNPQYADR--LRKLCEN 236
++ +E+VAL+G H +G H K ++ P A N + + L L E+
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK----------RSGYEGPWGAANNVFTNEFYLNLLNED 207
Query: 237 YTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAF 296
+ + + N + K G +L TD + D + V YA ++ F
Sbjct: 208 WKLEKNDA------------NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 255
Query: 297 FQAFANAMEKL 307
F+ F+ A EKL
Sbjct: 256 FKDFSKAFEKL 266
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 23/189 (12%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADR--LRKLCENYT 238
++ +E+VAL+G H +G H K S A N + + L L E++
Sbjct: 163 LNMNDREVVALMGAHALGKTHLKN--------SGYEGPGGAANNVFTNEFYLNLLNEDWK 214
Query: 239 KQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQ 298
+ + N + K G +L TD + D + V YA ++ FF+
Sbjct: 215 LEKNDA------------NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 262
Query: 299 AFANAMEKL 307
F+ A EKL
Sbjct: 263 DFSKAFEKL 271
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 203
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 204 FYLNLLNEDWKLEKNDANNEQWDSKSGYIMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 263
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 264 FSKAFEKL 271
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 74/189 (39%), Gaps = 23/189 (12%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADR--LRKLCENYT 238
++ +E+VAL+G H +G H K S A N + + L L E++
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKN--------SGYEGPGGAANNVFTNEFYLNLLNEDWK 212
Query: 239 KQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQ 298
+ + N + K G +L TD + D + V YA ++ FF+
Sbjct: 213 LEKNDA------------NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 299 AFANAMEKL 307
F+ A EKL
Sbjct: 261 DFSKAFEKL 269
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 27/191 (14%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 101 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 159
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDP--AMNPQYADR--LRKLCEN 236
++ +E+VAL+G H +G H K ++ P A N + + L L E+
Sbjct: 160 LNMNDREVVALMGAHALGKTHLK----------RSGYEGPFGAANNVFTNEFYLNLLNED 209
Query: 237 YTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAF 296
+ + + N + K G +L TD + D + V YA ++ F
Sbjct: 210 WKLEKNDA------------NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDRF 257
Query: 297 FQAFANAMEKL 307
F+ F+ A EKL
Sbjct: 258 FKDFSKAFEKL 268
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDYDKDAGYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 201
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 202 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 261
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 262 FSKAFEKL 269
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 76/191 (39%), Gaps = 27/191 (14%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDP--AMNPQYADR--LRKLCEN 236
++ +E+VAL+G H +G H K ++ P A N + + L L E+
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK----------RSGYEGPWGAANNVFTNEFYLNLLNED 212
Query: 237 YTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAF 296
+ + + N + K G +L TD + D + V YA ++ F
Sbjct: 213 WKLEKNDA------------NNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKF 260
Query: 297 FQAFANAMEKL 307
F+ F+ A EKL
Sbjct: 261 FKDFSKAFEKL 271
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPYGAANNVFTNE 198
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 199 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 258
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 259 FSKAFEKL 266
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 72/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + GP GR D+ D + G +P + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEWQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 162
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 203
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 204 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 263
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 264 FSKAFEKL 271
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRAGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGCANNVFTNE 203
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 204 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 263
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 264 FSKAFEKL 271
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 72/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL G H +G H K N Y +T +
Sbjct: 158 LNMNDREVVALKGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 198
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 199 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 258
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 259 FSKAFEKL 266
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 163
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 164 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 204
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L T+ + D + V YA ++ FF+
Sbjct: 205 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTEYSLIQDPKYLSIVKEYANDQDKFFKD 264
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 265 FSKAFEKL 272
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 73/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 104 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 162
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 163 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 203
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L T+ + D + V YA ++ FF+
Sbjct: 204 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFKD 263
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 264 FSKAFEKL 271
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 72/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 158 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 198
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G L TD + D + V YA ++ FF+
Sbjct: 199 FYLNLLNEDWKLEKNDANNEQWDSKSGYMHLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 258
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 259 FSKAFEKL 266
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 74/189 (39%), Gaps = 23/189 (12%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADR--LRKLCENYT 238
++ +E+VAL+G H +G H K S A N + + L L E++
Sbjct: 161 LNMNDREVVALMGAHALGKTHLKN--------SGYEGPGGAANNVFTNEFYLNLLNEDWK 212
Query: 239 KQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQ 298
+ + N + K G +L T+ + D + V YA ++ FF+
Sbjct: 213 LEKNDA------------NNEQWDSKSGYMMLPTNYSLIQDPKYLSIVKEYANDQDKFFK 260
Query: 299 AFANAMEKL 307
F+ A EKL
Sbjct: 261 DFSKAFEKL 269
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G K N Y +T +
Sbjct: 158 LNMNDREVVALMGAHALGKTELK-------------------NSGYEGPWGAANNVFTNE 198
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 199 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 258
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 259 FSKAFEKL 266
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 105 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 163
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G H +G H K N Y +T +
Sbjct: 164 LNMNDREVVALMGAHALGKTHLK-------------------NSGYEGPWGAANNVFTNE 204
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L T + D + V YA ++ FF+
Sbjct: 205 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTAYSLIQDPKYLSIVKEYANDQDKFFKD 264
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 265 FSKAFEKL 272
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 75/191 (39%), Gaps = 27/191 (14%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 102 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDADYVRTFFQR 160
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDP--AMNPQYADR--LRKLCEN 236
++ +E+VAL+G H +G H K ++ P A N + + L L E+
Sbjct: 161 LNMNDREVVALMGAHALGKTHLK----------RSGYEGPWGAANNVFTNEFYLNLLNED 210
Query: 237 YTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAF 296
+ + + N + K G +L T + D + V YA ++ F
Sbjct: 211 WKLEKNDA------------NNEQWDSKSGYMMLPTXYSLIQDPKYLSIVKEYANDQDKF 258
Query: 297 FQAFANAMEKL 307
F+ F+ A EKL
Sbjct: 259 FKDFSKAFEKL 269
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 158
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G +G H K N Y +T +
Sbjct: 159 LNMNDREVVALMGAGALGKTHLK-------------------NSGYEGPWGAANNVFTNE 199
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 200 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 259
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 260 FSKAFEKL 267
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 158
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G +G H K N Y +T +
Sbjct: 159 LNMNDREVVALMGAGALGKTHLK-------------------NSGYEGPWGAANNVFTNE 199
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 200 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 259
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 260 FSKAFEKL 267
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 72/188 (38%), Gaps = 21/188 (11%)
Query: 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGS 180
+S D+ S+ + + GP GR D+ D + G +P + + F
Sbjct: 99 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDT-PEDTTPDNGRLPDADKDAGYVRTFFQR 157
Query: 181 KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQ 240
++ +E+VAL+G +G H K N Y +T +
Sbjct: 158 LNMNDREVVALMGAGALGKTHLK-------------------NSGYEGPWGAANNVFTNE 198
Query: 241 PEMSAFIDVFTPGKFD-NMYYKNLKHGLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQA 299
++ + + K D N + K G +L TD + D + V YA ++ FF+
Sbjct: 199 FYLNLLNEDWKLEKNDANNEQWDSKSGYMMLPTDYSLIQDPKYLSIVKEYANDQDKFFKD 258
Query: 300 FANAMEKL 307
F+ A EKL
Sbjct: 259 FSKAFEKL 266
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 220 PAMNPQYADRLRKLCENYTKQPEMSAFIDVF-TPGKFDN---MYYKNLKHGLGLLQTD-Q 274
P MN + D+ K+ +Y QP + ++ + T G +D Y+ ++K+ D
Sbjct: 93 PKMNEAWLDQDYKVF-SYEPQPAGTVRVNYYRTDGNYDKKSLWYWGDVKNPSSAQWPDGT 151
Query: 275 DIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRCHEFTNLNAH 333
D G+ ++D+ NE A F L + KQG+D ++R ++FT+L H
Sbjct: 152 DFTATGKYGRYIDI-PLNEAAREFGF------LLLDESKQGDDVKIRKENYKFTDLKNH 203
>pdb|2O7I|A Chain A, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
Binding Protein Bound With Cellobiose
pdb|3I5O|A Chain A, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
Binding Protein Bound With Cellopentaose
pdb|3I5O|B Chain B, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
Binding Protein Bound With Cellopentaose
Length = 592
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 141 PHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSV-----QEMVALVGGH 195
P Y + KD+ + + +G+I L + + +++ KGL V +E + G
Sbjct: 207 PKYLAHVIYKDNPSASLAFERGDIDWNGLFIPSVWELWEKKGLPVGTWYKKEPYFIPDG- 265
Query: 196 TIGFAHCKEFADRIFNFSKTSQSDPAMNP------QYADRLRKLCENYTKQPEMSAFIDV 249
+GF + N +K SDPA+ Y + L+K Y Q S ID+
Sbjct: 266 -VGFVYV--------NNTKPGLSDPAVRKAIAYAIPYNEMLKKAYFGYGSQAHPSMVIDL 316
Query: 250 FTPGK 254
F P K
Sbjct: 317 FEPYK 321
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 139 GGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTI 197
G P + L GR +S + IP +++ I+D FG G S E+V L+ H++
Sbjct: 130 GSPRLEFLTGRSNSSQPSPPSL---IPGPGNTVTAILDRFGDAGFSPDEVVDLLAAHSL 185
>pdb|1CK6|A Chain A, Binding Mode Of Salicylhydroxamic Acid To Arthromyces
Ramosus Peroxidase
pdb|1C8I|A Chain A, Binding Mode Of Hydroxylamine To Arthromyces Ramosus
Peroxidase
pdb|1ARP|A Chain A, Crystal Structure Of The Fungal Peroxidase From
Arthromyces Ramosus At 1.9 Angstroms Resolution:
Structural Comparisons With The Lignin And Cytochrome C
Peroxidases
pdb|1ARU|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARV|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARW|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARX|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1ARY|A Chain A, Crystal Structures Of Cyanide-And Triiodide-Bound Forms Of
Arthromyces Ramosus Peroxidase At Different Ph Values.
Perturbations Of Active Site Residues And Their
Implication In Enzyme Catalysis
pdb|1GZA|A Chain A, Peroxidase
pdb|1GZB|A Chain A, Peroxidase
pdb|1HSR|A Chain A, Binding Mode Of Benzhydroxamic Acid To Arthromyces Ramosus
Peroxidase
pdb|2E3B|A Chain A, Crystal Structure Of The Ha-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E3A|A Chain A, Crystal Structure Of The No-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
pdb|2E39|A Chain A, Crystal Structure Of The Cn-Bound Form Of Arthromyces
Ramosus Peroxidase At 1.3 Angstroms Resolution
Length = 344
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 121 VSCSDIISVATR-NLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFG 179
VS D+I AT + G P + L GR +S + IP +++ I+D G
Sbjct: 112 VSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSSQPSPPSL---IPGPGNTVTAILDRMG 168
Query: 180 SKGLSVQEMVALVGGHTI 197
G S E+V L+ H++
Sbjct: 169 DAGFSPDEVVDLLAAHSL 186
>pdb|1LY9|A Chain A, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LY9|B Chain B, The Impact Of The Physical And Chemical Environment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYC|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 121 VSCSDIISVATR-NLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFG 179
VS D+I AT + G P + L GR S + IP +++ I+D G
Sbjct: 111 VSFGDLIQFATAVGMSNCPGSPRLEFLTGRSSSSQPSPPSL---IPGPGNTVTAILDRMG 167
Query: 180 SKGLSVQEMVALVGGHTI 197
G S E+V L+ H++
Sbjct: 168 DAGFSPDEVVDLLAAHSL 185
>pdb|3A3J|A Chain A, Crystal Structures Of Penicillin Binding Protein 5 From
Haemophilus Influenzae
Length = 344
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 30/137 (21%)
Query: 104 DLVTRAKTALELQCPG----VVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASH 159
D+VT ++A P + + +SVA N V+V + D+ V+ A H
Sbjct: 59 DMVTIGESAWGRNFPDSSKMFLDLNTQVSVADLNRGVIV--------VSGNDATVALAEH 110
Query: 160 VQGNIPTTNLSLSQIIDVFGSK--------GL-------SVQEMVALVGGHTIG--FAHC 202
+ GN+P ++++ + FG K GL S ++M A++G H I
Sbjct: 111 ISGNVPNFVETMNKYVQQFGLKNTNFTTPHGLDDPNQYSSARDM-AIIGAHIIRDLPEEY 169
Query: 203 KEFADRIFNFSKTSQSD 219
K ++++ F F+K Q +
Sbjct: 170 KIYSEKDFTFNKIKQPN 186
>pdb|1LYK|A Chain A, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
pdb|1LYK|B Chain B, The Impact Of The Physical And Chemical Enviroment On The
Molecular Structure Of Coprinus Cinereus Peroxidase
Length = 343
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Query: 121 VSCSDIISVATR-NLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFG 179
VS D+I AT + G P + L GR +S + IP +++ I+D G
Sbjct: 111 VSFGDLIQFATAVGMSNCPGSPRLEFLTGRSNSSQPSPPSL---IPGPGNTVTAILDRMG 167
Query: 180 SKGLSVQEMVALVGGHTI 197
G S E+V L+ H++
Sbjct: 168 DAGFSPDEVVDLLAAHSL 185
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 165 PTTNLSLSQIIDVFGSKGLSVQEMVALV-GGHTIGFAH 201
P S I + FG G++ E VAL+ GGH G H
Sbjct: 261 PDPAASAKDIREAFGRMGMNDTETVALIAGGHAFGKTH 298
>pdb|3A9C|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 321
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 285 FVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEV--RHRCHEFTNLNAHQVAKDR 339
FV + AA E F A+E++G + K+ DG+V H CH ++ + A ++
Sbjct: 93 FVIINAAKE--FIHNSEKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQ 147
>pdb|3A9C|C Chain C, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|E Chain E, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 322
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 285 FVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEV--RHRCHEFTNLNAHQVAKDR 339
FV + AA E F A+E++G + K+ DG+V H CH ++ + A ++
Sbjct: 94 FVIINAAKE--FIHNSEKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQ 148
>pdb|3A9C|D Chain D, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
pdb|3A9C|F Chain F, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 323
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 285 FVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEV--RHRCHEFTNLNAHQVAKDR 339
FV + AA E F A+E++G + K+ DG+V H CH ++ + A ++
Sbjct: 95 FVIINAAKE--FIHNSEKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQ 149
>pdb|3A9C|B Chain B, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase
From Thermococcus Kodakaraensis Kod1 In Complex With
Ribulose-1,5- Bisphosphate
Length = 326
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 285 FVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEV--RHRCHEFTNLNAHQVAKDR 339
FV + AA E F A+E++G + K+ DG+V H CH ++ + A ++
Sbjct: 101 FVIINAAKE--FIHNSEKALERIGEFGAKRIEDGDVIMTHXCHSKAAISVMKTAWEQ 155
>pdb|1MDX|A Chain A, Crystal Structure Of Arnb Transferase With Pyridoxal 5'
Phosphate
pdb|1MDZ|A Chain A, Crystal Structure Of Arnb Aminotransferase With
Cycloserine And Pyridoxal 5' Phosphate
Length = 393
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 65/163 (39%), Gaps = 28/163 (17%)
Query: 98 LPGDAFDLVTRAKTA---LELQCPGVVSCSDIIS-----VATRNLLVMVGGPHYKVLLGR 149
L G+ + + + TA + L G+ ++I+ V+T N++V++G V + R
Sbjct: 51 LTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGANPVMVDVDR 110
Query: 150 KDSIVSDASHVQGNI-PTTNL-----------SLSQIIDVFGSKGLSVQEMVALVGGHTI 197
D+++ H++ I P T L I + G+ V E A G +
Sbjct: 111 -DTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIEDAAHATGTSY 169
Query: 198 GFAHCKEFADRIFNFSKTSQSDPAM-------NPQYADRLRKL 233
H IF+F A NPQ+AD+LR L
Sbjct: 170 KGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSL 212
>pdb|2A4H|A Chain A, Solution Structure Of Sep15 From Drosophila Melanogaster
Length = 126
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 220 PAMNPQYADRLRKLCE-NYTKQPEMSAFIDVFTPGKFDNMYYKNLK 264
PA YA + ++C + P++ AFI P KF N+ K ++
Sbjct: 14 PAAQRTYAKAILEVCTCKFRAYPQIQAFIQSGRPAKFPNLQIKYVR 59
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,694,110
Number of Sequences: 62578
Number of extensions: 388654
Number of successful extensions: 1059
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 192
length of query: 344
length of database: 14,973,337
effective HSP length: 100
effective length of query: 244
effective length of database: 8,715,537
effective search space: 2126591028
effective search space used: 2126591028
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)