Query 039451
Match_columns 344
No_of_seqs 182 out of 1461
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 09:45:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1E-107 3E-112 786.0 25.7 299 23-328 21-324 (324)
2 cd00693 secretory_peroxidase H 100.0 6E-101 1E-105 737.5 25.4 298 26-327 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 3.6E-72 7.7E-77 521.5 12.2 228 43-292 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 1.3E-69 2.7E-74 515.9 21.5 233 41-326 15-258 (289)
5 cd00691 ascorbate_peroxidase A 100.0 4.2E-67 9.1E-72 493.0 20.2 230 38-313 11-251 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 4.7E-66 1E-70 484.5 19.2 232 29-313 3-248 (250)
7 cd00692 ligninase Ligninase an 100.0 3.6E-64 7.8E-69 486.3 22.2 244 39-336 16-295 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 5.6E-63 1.2E-67 463.1 20.2 220 41-313 18-248 (251)
9 cd00314 plant_peroxidase_like 100.0 1.9E-59 4.2E-64 441.6 18.6 224 42-309 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 4.6E-56 1E-60 436.5 18.9 273 27-317 29-400 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 3.9E-53 8.4E-58 439.2 18.3 270 27-314 39-404 (716)
12 PRK15061 catalase/hydroperoxid 100.0 4.7E-50 1E-54 414.2 19.0 270 27-314 41-410 (726)
13 cd08201 plant_peroxidase_like_ 100.0 2.4E-50 5.2E-55 377.8 12.7 232 27-309 14-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 2.1E-39 4.5E-44 307.5 16.8 220 45-311 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 1.3E-34 2.8E-39 301.3 16.1 222 41-312 428-710 (716)
16 PRK15061 catalase/hydroperoxid 100.0 7.5E-34 1.6E-38 294.2 17.4 221 45-312 442-722 (726)
17 COG0376 KatG Catalase (peroxid 100.0 1.3E-30 2.8E-35 259.4 16.2 253 41-311 70-416 (730)
18 COG0376 KatG Catalase (peroxid 99.4 5.5E-13 1.2E-17 134.2 11.8 217 45-311 452-725 (730)
19 PTZ00411 transaldolase-like pr 70.7 55 0.0012 32.6 11.2 59 138-196 180-251 (333)
20 PF11895 DUF3415: Domain of un 47.5 16 0.00035 28.8 2.3 34 295-332 2-35 (80)
21 PRK05269 transaldolase B; Prov 47.0 1.9E+02 0.0042 28.5 10.3 49 138-186 170-221 (318)
22 COG3763 Uncharacterized protei 40.1 1.1E+02 0.0024 23.6 5.8 29 41-69 23-51 (71)
23 TIGR00874 talAB transaldolase. 39.6 2.9E+02 0.0063 27.3 10.3 48 137-185 167-218 (317)
24 PRK12309 transaldolase/EF-hand 33.6 3.4E+02 0.0075 27.6 10.0 47 138-185 174-224 (391)
25 KOG0427 Ubiquitin conjugating 30.2 23 0.00051 30.6 0.8 45 8-69 115-159 (161)
26 PF15240 Pro-rich: Proline-ric 28.4 41 0.00088 30.6 2.1 16 7-22 1-16 (179)
27 TIGR03044 PS_II_psb27 photosys 21.6 1.5E+02 0.0032 25.8 4.1 42 6-52 11-53 (135)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.4e-107 Score=785.96 Aligned_cols=299 Identities=36% Similarity=0.664 Sum_probs=283.6
Q ss_pred cccccCccccccCCCChHHHHHHHHHHHHhhCCCchhhHHHHHhhccCCCCCCcceecccCCCCcCccccCCCCCCCcch
Q 039451 23 TQSQLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFHKSERDADVNLPLPGDA 102 (344)
Q Consensus 23 ~~~~L~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~GcDgSilld~~~~~~~Ek~~~~N~~L~~rg 102 (344)
+.++|+++||++|||++|+||+++|++++.+||+++|++|||+||||||+||||||||+++ .+||++++|. ++||
T Consensus 21 ~~~~L~~~fY~~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~---~~Ek~a~~N~--~l~G 95 (324)
T PLN03030 21 QGQGTRVGFYSTTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGS---NTEKTALPNL--LLRG 95 (324)
T ss_pred hhccCccchhhCcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCC---cccccCCCCc--Ccch
Confidence 3467999999999999999999999999999999999999999999999999999999865 4699999999 6799
Q ss_pred hhHHHHHHHHHHhhCCCCCCHHHHHHHhhhhhhhhcCCCCeeeeCCCCCCCCcccccCCCCCCCCCCCHHHHHHHHHhCC
Q 039451 103 FDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKG 182 (344)
Q Consensus 103 ~~~Id~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~G 182 (344)
|++|+.||++||++||++|||||||||||||||+++|||.|+|++||||+++|.+.++. +||.|+.++++|++.|+++|
T Consensus 96 f~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~G 174 (324)
T PLN03030 96 YDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKG 174 (324)
T ss_pred HHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999877665 89999999999999999999
Q ss_pred CChhhhhhhccCcccccccccccccccccCCCCC-CCCCCCCHHHHHHHHhhcCCCCCCCCCcccccCCCCCccchHhHH
Q 039451 183 LSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTS-QSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYK 261 (344)
Q Consensus 183 lt~~dlVaLsGaHTiG~~hc~~f~~Rl~~f~g~~-~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~~lD~~Tp~~FDN~Yy~ 261 (344)
|+.+|||+||||||||++||.+|.+|||||++++ .+||+||+.|++.|++.||..+ ++.+.+++|+.||.+|||+||+
T Consensus 175 l~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~-~~~~~~~lD~~Tp~~FDn~Yy~ 253 (324)
T PLN03030 175 LNTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNG-DGSRRIALDTGSSNRFDASFFS 253 (324)
T ss_pred CCHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCC-CCCccccCCCCCCcccccHHHH
Confidence 9999999999999999999999999999999875 5799999999999999999633 2334688999999999999999
Q ss_pred HhhhcCccccchhhhhcCCCCHHHHHHhhhCH----HHHHHHHHHHHHHhhcCCCCCCCCccccccccccc
Q 039451 262 NLKHGLGLLQTDQDIAVDGRTKPFVDLYAANE----TAFFQAFANAMEKLGVYNLKQGNDGEVRHRCHEFT 328 (344)
Q Consensus 262 ~l~~~~glL~SD~~L~~d~~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C~~~n 328 (344)
||++++|+|+|||+|+.|++|+++|++||.|+ +.|+++|++||+|||+|+|+||++|||||+|+.+|
T Consensus 254 nll~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 254 NLKNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred HHHhcCCCcCCchHhhcCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 99999999999999999999999999999875 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=6.3e-101 Score=737.47 Aligned_cols=298 Identities=48% Similarity=0.829 Sum_probs=287.3
Q ss_pred ccCccccccCCCChHHHHHHHHHHHHhhCCCchhhHHHHHhhccCCCCCCcceecccCCCCcCccccCCCCCCCcchhhH
Q 039451 26 QLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSNAFHKSERDADVNLPLPGDAFDL 105 (344)
Q Consensus 26 ~L~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~GcDgSilld~~~~~~~Ek~~~~N~~L~~rg~~~ 105 (344)
||+++||++|||++|+||+++|++.+.++++++|++|||+||||||+||||||||+++.++.+|+++++|. +++||++
T Consensus 1 ~L~~~~Y~~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~--~l~g~~~ 78 (298)
T cd00693 1 QLSVGFYSKSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNL--SLRGFDV 78 (298)
T ss_pred CCCcccccCCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCC--CcchhHH
Confidence 59999999999999999999999999999999999999999999999999999999887778999999999 5799999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHhhhhhhhhcCCCCeeeeCCCCCCCCcccccCCCCCCCCCCCHHHHHHHHHhCCCCh
Q 039451 106 VTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSV 185 (344)
Q Consensus 106 Id~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~Glt~ 185 (344)
|+.||+++|+.||++||||||||||||+||+++|||.|+|++||+|++++.+.++ +.||+|+.+++++++.|+++||++
T Consensus 79 i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~ 157 (298)
T cd00693 79 IDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTV 157 (298)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCH
Confidence 9999999999999999999999999999999999999999999999998876655 789999999999999999999999
Q ss_pred hhhhhhccCcccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCcccccCCCCCccchHhHHHhhh
Q 039451 186 QEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKH 265 (344)
Q Consensus 186 ~dlVaLsGaHTiG~~hc~~f~~Rl~~f~g~~~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~ 265 (344)
+|||+|+||||||++||.+|.+|||||+|++.+||+||+.|+..|++.||... ++.+.+++|+.||.+|||+||++++.
T Consensus 158 ~d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~-~~~~~~~lD~~Tp~~FDn~Yy~~l~~ 236 (298)
T cd00693 158 TDLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGG-DDDTLVPLDPGTPNTFDNSYYKNLLA 236 (298)
T ss_pred HHheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCC-CCCccccCCCCCCCccccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999754 45567899999999999999999999
Q ss_pred cCccccchhhhhcCCCCHHHHHHhhhCHHHHHHHHHHHHHHhhcCCCCCCCCcccccccccc
Q 039451 266 GLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRCHEF 327 (344)
Q Consensus 266 ~~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C~~~ 327 (344)
++|+|+|||+|+.|++|+++|++||.|++.|+++|++||+||++++|+||++||||++|+.+
T Consensus 237 ~~glL~SD~~L~~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 237 GRGLLTSDQALLSDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred cccCccCCHHhccCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999875
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=3.6e-72 Score=521.46 Aligned_cols=228 Identities=45% Similarity=0.789 Sum_probs=208.8
Q ss_pred HHHHHHHHHhhCCCchhhHHHHHhhccCC-CCCCcceecccCCCCcCccccCCCCCCCcc-hhhHHHHHHHHHHhhCCCC
Q 039451 43 MQQVITDKQLSAPATAAGVLRLFLHDCLV-DGCDASVLITSNAFHKSERDADVNLPLPGD-AFDLVTRAKTALELQCPGV 120 (344)
Q Consensus 43 Vr~~v~~~~~~d~~~aa~llRL~FHDcfv-~GcDgSilld~~~~~~~Ek~~~~N~~L~~r-g~~~Id~iK~~le~~cp~~ 120 (344)
||++|+++++.+++++|+||||+|||||+ +|||||||+. .+|+++++|.+ ++ ++++|+.||+++|++||++
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~-----~~e~~~~~N~g--l~~~~~~i~~ik~~~~~~cp~~ 73 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLF-----SAEKDAPPNRG--LRDGFDVIDPIKAKLEAACPGV 73 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGS-----TTGGGSGGGTT--HHHHHHHHHHHHHHHCHHSTTT
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceecc-----ccccccccccC--cceeeechhhHHhhhcccccCC
Confidence 89999999999999999999999999999 9999999983 57999999995 56 9999999999999999999
Q ss_pred CCHHHHHHHhhhhhhhhcCCCCeeeeCCCCCCCCcccccCCCCCCCCCCCHHHHHHHHHhCCCChhhhhhhccCcccccc
Q 039451 121 VSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGGHTIGFA 200 (344)
Q Consensus 121 VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~Glt~~dlVaLsGaHTiG~~ 200 (344)
|||||||+||||+||+.+|||.|+|++||+|++++...++ .+||.|+.+++++++.|+++|||++|||||+||||||++
T Consensus 74 VS~ADiialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~ 152 (230)
T PF00141_consen 74 VSCADIIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRA 152 (230)
T ss_dssp S-HHHHHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEE
T ss_pred CCHHHHHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccc
Confidence 9999999999999999999999999999999999998766 679999999999999999999999999999999999999
Q ss_pred cccccccccccCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCcccccCCCCCccchHhHHHhhhcCccccchhhhhcCC
Q 039451 201 HCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLGLLQTDQDIAVDG 280 (344)
Q Consensus 201 hc~~f~~Rl~~f~g~~~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~glL~SD~~L~~d~ 280 (344)
||.+|. ||| + .+||+||+.|+.. .|+ .+ +...+++| ||.+|||+||++++.++|+|+|||+|++|+
T Consensus 153 ~c~~f~-rl~-~----~~dp~~d~~~~~~---~C~-~~--~~~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~ 218 (230)
T PF00141_consen 153 HCSSFS-RLY-F----PPDPTMDPGYAGQ---NCN-SG--GDNGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDP 218 (230)
T ss_dssp SGGCTG-GTS-C----SSGTTSTHHHHHH---SSS-TS--GCTCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHST
T ss_pred eecccc-ccc-c----cccccccccccee---ccC-CC--cccccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCH
Confidence 999999 999 5 5699999999988 993 32 22378899 999999999999999999999999999999
Q ss_pred CCHHHHHHhhhC
Q 039451 281 RTKPFVDLYAAN 292 (344)
Q Consensus 281 ~t~~~V~~yA~d 292 (344)
+|+++|++||+|
T Consensus 219 ~t~~~V~~yA~d 230 (230)
T PF00141_consen 219 ETRPIVERYAQD 230 (230)
T ss_dssp THHHHHHHHHHT
T ss_pred HHHHHHHHHhcC
Confidence 999999999986
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.3e-69 Score=515.89 Aligned_cols=233 Identities=31% Similarity=0.451 Sum_probs=210.7
Q ss_pred HHHHHHHHHHHhhCCCchhhHHHHHhhccC-------CCCCCcceecccCCCCcCccccCCCCCCCcchhhHHHHHHHHH
Q 039451 41 LIMQQVITDKQLSAPATAAGVLRLFLHDCL-------VDGCDASVLITSNAFHKSERDADVNLPLPGDAFDLVTRAKTAL 113 (344)
Q Consensus 41 ~iVr~~v~~~~~~d~~~aa~llRL~FHDcf-------v~GcDgSilld~~~~~~~Ek~~~~N~~L~~rg~~~Id~iK~~l 113 (344)
+.+|+++.+ +.++|.++|.+|||+||||| ++||||||++. +|+++++|.+| -+||++|++||+++
T Consensus 15 ~~~~~~~~~-~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~------~E~~~~~N~gL-~~g~~vid~iK~~~ 86 (289)
T PLN02608 15 EKARRDLRA-LIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE------EEYSHGANNGL-KIAIDLCEPVKAKH 86 (289)
T ss_pred HHHHHHHHH-HHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc------cccCCccccch-HHHHHHHHHHHHHc
Confidence 456777744 77899999999999999999 99999999983 59999999953 26999999999987
Q ss_pred HhhCCCCCCHHHHHHHhhhhhhhhcCCCCeeeeCCCCCCCCcccccCCCCCCCCCCCHHHHHHHHHhCCCChhhhhhhcc
Q 039451 114 ELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVG 193 (344)
Q Consensus 114 e~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~Glt~~dlVaLsG 193 (344)
| +|||||||+||||+||+.+|||.|+|++||+|+++++ ++.+||+|+.+++++++.|+++||+++|||+|+|
T Consensus 87 ----~-~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsG 158 (289)
T PLN02608 87 ----P-KITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACP---EEGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSG 158 (289)
T ss_pred ----C-CcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCC---ccCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcc
Confidence 4 8999999999999999999999999999999999986 4568999999999999999999999999999999
Q ss_pred CcccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCcccccCCCCCccchHhHHHhhhc--Ccc--
Q 039451 194 GHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKHG--LGL-- 269 (344)
Q Consensus 194 aHTiG~~hc~~f~~Rl~~f~g~~~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~--~gl-- 269 (344)
|||||++||. |+ +|.|. + + .||.+|||+||++++.+ +|+
T Consensus 159 AHTiG~ahc~----r~-g~~g~--------------------------~-----~-~Tp~~FDN~Yy~~ll~~~~~gll~ 201 (289)
T PLN02608 159 GHTLGRAHPE----RS-GFDGP--------------------------W-----T-KEPLKFDNSYFVELLKGESEGLLK 201 (289)
T ss_pred cccccccccc----CC-CCCCC--------------------------C-----C-CCCCccChHHHHHHHcCCcCCccc
Confidence 9999999994 54 44221 1 1 58999999999999998 788
Q ss_pred ccchhhhhcCCCCHHHHHHhhhCHHHHHHHHHHHHHHhhcCCCCCCCCccccccccc
Q 039451 270 LQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRHRCHE 326 (344)
Q Consensus 270 L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C~~ 326 (344)
|+|||+|+.|++|+++|++||.|++.|+++|++||+||++|+|+||++||+.+.-+.
T Consensus 202 L~SD~~L~~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~~ 258 (289)
T PLN02608 202 LPTDKALLEDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTST 258 (289)
T ss_pred cccCHhhhcChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCcc
Confidence 799999999999999999999999999999999999999999999999999987653
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=4.2e-67 Score=492.99 Aligned_cols=230 Identities=27% Similarity=0.363 Sum_probs=208.1
Q ss_pred ChHHHHHHHHHHHHhhCCCchhhHHHHHhhccCCCCCCcceecccC---CCCcCccccCCCCCCCcchhhHHHHHHHHHH
Q 039451 38 QFPLIMQQVITDKQLSAPATAAGVLRLFLHDCLVDGCDASVLITSN---AFHKSERDADVNLPLPGDAFDLVTRAKTALE 114 (344)
Q Consensus 38 ~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~GcDgSilld~~---~~~~~Ek~~~~N~~L~~rg~~~Id~iK~~le 114 (344)
..++|||++|++.++ +++++|.+|||+|||||+ ||+|+++++. ..+.+|+++++|.+| .+||++|++||+++
T Consensus 11 ~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L-~~~~~~i~~iK~~~- 85 (253)
T cd00691 11 KDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGL-DIARKLLEPIKKKY- 85 (253)
T ss_pred HHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccch-HHHHHHHHHHHHHc-
Confidence 367899999999999 999999999999999994 8877777532 234579999999953 38999999999987
Q ss_pred hhCCCCCCHHHHHHHhhhhhhhhcCCCCeeeeCCCCCCCCcccccCCCCCCCCCCCHHHHHHHHHhCCCChhhhhhhccC
Q 039451 115 LQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVGG 194 (344)
Q Consensus 115 ~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~Glt~~dlVaLsGa 194 (344)
| +||||||||||||+||+.+|||.|+|++||+|++++....++.+||.|+.+++++++.|+++||+++|||+|+||
T Consensus 86 ---~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGa 161 (253)
T cd00691 86 ---P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGA 161 (253)
T ss_pred ---C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhccc
Confidence 5 799999999999999999999999999999999999877788899999999999999999999999999999999
Q ss_pred cccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCcccccCCCCCccchHhHHHhhhcCc------
Q 039451 195 HTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKHGLG------ 268 (344)
Q Consensus 195 HTiG~~hc~~f~~Rl~~f~g~~~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~g------ 268 (344)
||||++||.. ++|.|+ + ..||.+|||+||++|+.++|
T Consensus 162 HTiG~a~c~~-----~~~~g~--------------------------~------~~tp~~FDn~Yy~~ll~~~g~~~~~~ 204 (253)
T cd00691 162 HTLGRCHKER-----SGYDGP--------------------------W------TKNPLKFDNSYFKELLEEDWKLPTPG 204 (253)
T ss_pred ceeecccccC-----CCCCCC--------------------------C------CCCCCcccHHHHHHHhcCCCccCcCc
Confidence 9999999953 233221 1 15899999999999999999
Q ss_pred --cccchhhhhcCCCCHHHHHHhhhCHHHHHHHHHHHHHHhhcCCCC
Q 039451 269 --LLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLK 313 (344)
Q Consensus 269 --lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~igv~ 313 (344)
+|+||++|+.|++|+.+|++||.|+++|+++|++||+||++++|.
T Consensus 205 ~~~L~sD~~L~~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~ 251 (253)
T cd00691 205 LLMLPTDKALLEDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVP 251 (253)
T ss_pred ceechhhHHHHcCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999985
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=4.7e-66 Score=484.46 Aligned_cols=232 Identities=29% Similarity=0.423 Sum_probs=208.0
Q ss_pred ccccccC--CCChHHHHHHHHHHHHhhCCCchhhHHHHHhh-----ccCCC--CCCcceecccCCCCcCccccCCCCCCC
Q 039451 29 LNYYNST--CPQFPLIMQQVITDKQLSAPATAAGVLRLFLH-----DCLVD--GCDASVLITSNAFHKSERDADVNLPLP 99 (344)
Q Consensus 29 ~~fY~~s--CP~~e~iVr~~v~~~~~~d~~~aa~llRL~FH-----Dcfv~--GcDgSilld~~~~~~~Ek~~~~N~~L~ 99 (344)
.+||..+ |+.+++.++..+++.+ .+++++|.||||+|| ||+++ ||||||.. .+|+++++|.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~------~~E~~~~~N~gl- 74 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRF------DAEQAHGANSGI- 74 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCccccc------cccccCCCccCH-
Confidence 4677654 8889999999999977 889999999999999 88886 99999944 469999999953
Q ss_pred cchhhHHHHHHHHHHhhCCCCCCHHHHHHHhhhhhhhhcCCCCeeeeCCCCCCCCcccccCCCCCCCCCCCHHHHHHHHH
Q 039451 100 GDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFG 179 (344)
Q Consensus 100 ~rg~~~Id~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~~~~~LP~p~~~~~~l~~~F~ 179 (344)
.+||++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++. ++++||.|+.++++|++.|+
T Consensus 75 ~~~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~---~~~~lP~p~~~~~~l~~~F~ 146 (250)
T PLN02364 75 HIALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPP---PEGRLPDATKGCDHLRDVFA 146 (250)
T ss_pred HHHHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCccccc---ccCCCCCCCcCHHHHHHHHH
Confidence 48999999999998 48999999999999999999999999999999999986 45689999999999999999
Q ss_pred h-CCCChhhhhhhccCcccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCcccccCCCCCccchH
Q 039451 180 S-KGLSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNM 258 (344)
Q Consensus 180 ~-~Glt~~dlVaLsGaHTiG~~hc~~f~~Rl~~f~g~~~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~~lD~~Tp~~FDN~ 258 (344)
+ +|||++|||+|+||||||++|| .|+ +|.|+ + + .||.+|||+
T Consensus 147 ~~~Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g~--------------------------~-----~-~tp~~fDn~ 189 (250)
T PLN02364 147 KQMGLSDKDIVALSGAHTLGRCHK----DRS-GFEGA--------------------------W-----T-SNPLIFDNS 189 (250)
T ss_pred HhcCCCHHHheeeecceeeccccC----CCC-CCCCC--------------------------C-----C-CCCCccchH
Confidence 7 6999999999999999999999 443 44321 1 1 589999999
Q ss_pred hHHHhhhc--Ccccc--chhhhhcCCCCHHHHHHhhhCHHHHHHHHHHHHHHhhcCCCC
Q 039451 259 YYKNLKHG--LGLLQ--TDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLK 313 (344)
Q Consensus 259 Yy~~l~~~--~glL~--SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~igv~ 313 (344)
||++++.+ +|+|. |||+|+.|++|+.+|++||.|++.|+++|++||+||++|++-
T Consensus 190 Yy~~ll~~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 190 YFKELLSGEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHHHHhcCCcCCCccccchHHHccCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 99999999 89865 999999999999999999999999999999999999999863
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=3.6e-64 Score=486.26 Aligned_cols=244 Identities=25% Similarity=0.340 Sum_probs=217.7
Q ss_pred hHHHHHHHHHHHHhhCC---CchhhHHHHHhhccCC------------CCCCcceecccCCCCcCccccCCCCCCCcchh
Q 039451 39 FPLIMQQVITDKQLSAP---ATAAGVLRLFLHDCLV------------DGCDASVLITSNAFHKSERDADVNLPLPGDAF 103 (344)
Q Consensus 39 ~e~iVr~~v~~~~~~d~---~~aa~llRL~FHDcfv------------~GcDgSilld~~~~~~~Ek~~~~N~~L~~rg~ 103 (344)
+|..|++++++.+..+. ..|+.+|||+||||++ +|||||||++.+ .|+++++|.| ++
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~----~E~~~~~N~g--L~-- 87 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD----IETAFHANIG--LD-- 87 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc----ccccCCCCCC--HH--
Confidence 68999999999998554 5678899999999996 799999999753 5999999995 45
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHhhhhhhhh-cCCCCeeeeCCCCCCCCcccccCCCCCCCCCCCHHHHHHHHHhCC
Q 039451 104 DLVTRAKTALELQCPGVVSCSDIISVATRNLLVM-VGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKG 182 (344)
Q Consensus 104 ~~Id~iK~~le~~cp~~VScADilalAar~AV~~-~GGP~~~v~~GRrD~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~G 182 (344)
++|+.||..+|+.| |||||||+||||+||+. .|||.|+|++||+|++++. +++.||.|+.+++++++.|+++|
T Consensus 88 ~vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~---~~g~LP~p~~sv~~l~~~F~~~G 161 (328)
T cd00692 88 EIVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPA---PDGLVPEPFDSVDKILARFADAG 161 (328)
T ss_pred HHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcC
Confidence 99999999999998 99999999999999995 5999999999999999986 55689999999999999999999
Q ss_pred CChhhhhhhccCcccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCcccccCCCCCccchHhHHH
Q 039451 183 LSVQEMVALVGGHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKN 262 (344)
Q Consensus 183 lt~~dlVaLsGaHTiG~~hc~~f~~Rl~~f~g~~~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~~lD~~Tp~~FDN~Yy~~ 262 (344)
|+++|||+|+||||||++|. +||+++ + .++| .||.+|||+||++
T Consensus 162 f~~~E~VaLsGAHTiG~a~~---------------~Dps~~----------------g----~p~D-~TP~~FDn~Yf~~ 205 (328)
T cd00692 162 FSPDELVALLAAHSVAAQDF---------------VDPSIA----------------G----TPFD-STPGVFDTQFFIE 205 (328)
T ss_pred CCHHHHhhhcccccccccCC---------------CCCCCC----------------C----CCCC-CCcchhcHHHHHH
Confidence 99999999999999999982 367664 1 3578 5999999999999
Q ss_pred hh-hcCc-------------------cccchhhhhcCCCCHHHHHHhhhCHHHHHHHHHHHHHHhhcCCCCCCCCccccc
Q 039451 263 LK-HGLG-------------------LLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLKQGNDGEVRH 322 (344)
Q Consensus 263 l~-~~~g-------------------lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~igv~tg~~GeiR~ 322 (344)
++ .+++ +|+||++|+.|++|+.+|++||.||++|+++|++||+||+++||.. ..+.
T Consensus 206 ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~~----~~l~ 281 (328)
T cd00692 206 TLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQDN----ISLT 281 (328)
T ss_pred HHHcCCCCCCccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCc----chhc
Confidence 87 5555 4999999999999999999999999999999999999999999863 4888
Q ss_pred ccccccCCCchhhH
Q 039451 323 RCHEFTNLNAHQVA 336 (344)
Q Consensus 323 ~C~~~n~~~~~~~~ 336 (344)
+|+.|+..+.+...
T Consensus 282 dcs~v~p~~~~~~~ 295 (328)
T cd00692 282 DCSDVIPPPKPLSQ 295 (328)
T ss_pred cCcccCCCCCCCCC
Confidence 99999988765443
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=5.6e-63 Score=463.10 Aligned_cols=220 Identities=31% Similarity=0.437 Sum_probs=196.6
Q ss_pred HHHHHHHHHHHhhCCCchhhHHHHHhhccCC-------CCCCcceecccCCCCcCccccCCCCCCCcchhhHHHHHHHHH
Q 039451 41 LIMQQVITDKQLSAPATAAGVLRLFLHDCLV-------DGCDASVLITSNAFHKSERDADVNLPLPGDAFDLVTRAKTAL 113 (344)
Q Consensus 41 ~iVr~~v~~~~~~d~~~aa~llRL~FHDcfv-------~GcDgSilld~~~~~~~Ek~~~~N~~L~~rg~~~Id~iK~~l 113 (344)
+-++..+.+.+ .+...+|.+|||+||||.+ +||||||.+ ..|+++++|.|| -.++++|++||+++
T Consensus 18 ~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf------~~E~~~~~N~gL-~~~~~~i~~iK~~~ 89 (251)
T PLN02879 18 QRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRH------PQELAHDANNGL-DIAVRLLDPIKELF 89 (251)
T ss_pred HHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecC------hhhccCCCcCCh-HHHHHHHHHHHHHc
Confidence 34566777765 5678999999999999964 899999986 359999999964 23999999999998
Q ss_pred HhhCCCCCCHHHHHHHhhhhhhhhcCCCCeeeeCCCCCCCCcccccCCCCCCCCCCCHHHHHHHHHhCCCChhhhhhhcc
Q 039451 114 ELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVG 193 (344)
Q Consensus 114 e~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~~~~~LP~p~~~~~~l~~~F~~~Glt~~dlVaLsG 193 (344)
++|||||||+||||+||+.+|||.|+|++||+|+.++. ++.+||.|+.+++++++.|+++||+++|||||+|
T Consensus 90 -----~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~---~~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsG 161 (251)
T PLN02879 90 -----PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPP---PEGRLPQATKGVDHLRDVFGRMGLNDKDIVALSG 161 (251)
T ss_pred -----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCC---cccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeec
Confidence 47999999999999999999999999999999999875 5678999999999999999999999999999999
Q ss_pred CcccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCcccccCCCCCccchHhHHHhhhc--Ccc--
Q 039451 194 GHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKHG--LGL-- 269 (344)
Q Consensus 194 aHTiG~~hc~~f~~Rl~~f~g~~~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~--~gl-- 269 (344)
|||||++||. | ++|.|. +| .||.+|||+||++|+.+ +|+
T Consensus 162 aHTiG~ah~~----r-~g~~g~-------------------------------~d-~tp~~FDN~Yy~~ll~~~~~gll~ 204 (251)
T PLN02879 162 GHTLGRCHKE----R-SGFEGA-------------------------------WT-PNPLIFDNSYFKEILSGEKEGLLQ 204 (251)
T ss_pred cccccccccc----c-ccCCCC-------------------------------CC-CCccceeHHHHHHHHcCCcCCCcc
Confidence 9999999995 3 444332 22 58999999999999999 898
Q ss_pred ccchhhhhcCCCCHHHHHHhhhCHHHHHHHHHHHHHHhhcCCCC
Q 039451 270 LQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYNLK 313 (344)
Q Consensus 270 L~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~igv~ 313 (344)
|+||++|+.|++|+++|++||.||++|+++|++||+||++||+.
T Consensus 205 L~SD~aL~~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 205 LPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred chhhHHHhcCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 68999999999999999999999999999999999999999974
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.9e-59 Score=441.58 Aligned_cols=224 Identities=32% Similarity=0.424 Sum_probs=206.6
Q ss_pred HHHHHHHHHHhhCCCchhhHHHHHhhccCCC--------CCCcceecccCCCCcCccccCCCCCCCcchhhHHHHHHHHH
Q 039451 42 IMQQVITDKQLSAPATAAGVLRLFLHDCLVD--------GCDASVLITSNAFHKSERDADVNLPLPGDAFDLVTRAKTAL 113 (344)
Q Consensus 42 iVr~~v~~~~~~d~~~aa~llRL~FHDcfv~--------GcDgSilld~~~~~~~Ek~~~~N~~L~~rg~~~Id~iK~~l 113 (344)
.|++.|++.+.+++.+++++|||+|||||+. ||||||++++ |+++++|.+| .+++++|++||+++
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~------e~~~~~N~~l-~~~~~~l~~ik~~~ 74 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEP------ELDRPENGGL-DKALRALEPIKSAY 74 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccc------cccCcccccH-HHHHHHHHHHHHHc
Confidence 5889999999999999999999999999996 9999999963 9999999974 69999999999999
Q ss_pred HhhCCCCCCHHHHHHHhhhhhhhhc--CCCCeeeeCCCCCCCCcc--cccCCCCCCCCCCCHHHHHHHHHhCCCChhhhh
Q 039451 114 ELQCPGVVSCSDIISVATRNLLVMV--GGPHYKVLLGRKDSIVSD--ASHVQGNIPTTNLSLSQIIDVFGSKGLSVQEMV 189 (344)
Q Consensus 114 e~~cp~~VScADilalAar~AV~~~--GGP~~~v~~GRrD~~~s~--~~~~~~~LP~p~~~~~~l~~~F~~~Glt~~dlV 189 (344)
|. |++|||||||+||+++||+.+ |||.|+|++||+|++++. ...+...+|.|..+++++++.|+++||+++|||
T Consensus 75 ~~--~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~V 152 (255)
T cd00314 75 DG--GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELV 152 (255)
T ss_pred CC--CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHH
Confidence 98 899999999999999999999 999999999999999764 344667789999999999999999999999999
Q ss_pred hhc-cCccc-ccccccccccccccCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCcccccCCCCCccchHhHHHhhhcC
Q 039451 190 ALV-GGHTI-GFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDNMYYKNLKHGL 267 (344)
Q Consensus 190 aLs-GaHTi-G~~hc~~f~~Rl~~f~g~~~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~~lD~~Tp~~FDN~Yy~~l~~~~ 267 (344)
||+ ||||| |++||..|..|+ |+ +|+.||.+|||+||++++.++
T Consensus 153 AL~~GaHti~G~~~~~~~~~~~------------------------~~-----------~~~~tp~~fDN~yy~~l~~~~ 197 (255)
T cd00314 153 ALSAGAHTLGGKNHGDLLNYEG------------------------SG-----------LWTSTPFTFDNAYFKNLLDMN 197 (255)
T ss_pred hhccCCeeccCcccCCCCCccc------------------------CC-----------CCCCCCCccchHHHHHHhcCC
Confidence 999 99999 999998877664 11 233799999999999999988
Q ss_pred ----------------ccccchhhhhcCCCCHHHHHHhhhCHHHHHHHHHHHHHHhhc
Q 039451 268 ----------------GLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGV 309 (344)
Q Consensus 268 ----------------glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 309 (344)
++|+||++|+.|++|+.+|++||.|++.|+++|++||+||++
T Consensus 198 ~~~~~~~~~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 198 WEWRVGSPDPDGVKGPGLLPSDYALLSDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred cccccCCccCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 899999999999999999999999999999999999999985
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=4.6e-56 Score=436.47 Aligned_cols=273 Identities=21% Similarity=0.238 Sum_probs=233.4
Q ss_pred cCccc-cccCCCCh-HHHHHHHHHHHHhhC--------CCchhhHHHHHhhccCC-------CCCC-cceecccCCCCcC
Q 039451 27 LALNY-YNSTCPQF-PLIMQQVITDKQLSA--------PATAAGVLRLFLHDCLV-------DGCD-ASVLITSNAFHKS 88 (344)
Q Consensus 27 L~~~f-Y~~sCP~~-e~iVr~~v~~~~~~d--------~~~aa~llRL~FHDcfv-------~GcD-gSilld~~~~~~~ 88 (344)
+-.+| |.+.+-.. .+.|+++|++.+... ...+|.+|||+|||+.+ +|++ |+|.+ .+
T Consensus 29 ~~~~~~~~~~~~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf------~p 102 (409)
T cd00649 29 MGEDFNYAEEFKKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRF------AP 102 (409)
T ss_pred CCCCCCHHHHhhhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCcccc------cc
Confidence 44444 44444333 368999999998864 47999999999999986 7886 78876 46
Q ss_pred ccccCCCCCCCcchhhHHHHHHHHHHhhCCCCCCHHHHHHHhhhhhhhhcCCCCeeeeCCCCCCCCcccc----------
Q 039451 89 ERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDAS---------- 158 (344)
Q Consensus 89 Ek~~~~N~~L~~rg~~~Id~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~---------- 158 (344)
|++++.|.+| .++..+++.||+++ |..||+||+|+||+.+|||.+|||.|++.+||.|...+...
T Consensus 103 e~~~~~N~gL-~~a~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~ 177 (409)
T cd00649 103 LNSWPDNVNL-DKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWL 177 (409)
T ss_pred ccCcHhhhhH-HHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcc
Confidence 9999999985 67999999999988 55799999999999999999999999999999999764320
Q ss_pred -------------------------cCCC--CCCCCCCCHHHHHHHHHhCCCChhhhhhh-ccCcccccccccccccccc
Q 039451 159 -------------------------HVQG--NIPTTNLSLSQIIDVFGSKGLSVQEMVAL-VGGHTIGFAHCKEFADRIF 210 (344)
Q Consensus 159 -------------------------~~~~--~LP~p~~~~~~l~~~F~~~Glt~~dlVaL-sGaHTiG~~hc~~f~~Rl~ 210 (344)
.+++ .||+|..++.+|++.|++||||++||||| +||||||++||.+|.+||.
T Consensus 178 ~~~~~~~~~~l~~pl~a~~mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg 257 (409)
T cd00649 178 ADKRYSGDRDLENPLAAVQMGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG 257 (409)
T ss_pred cccccccchhhccchhhhhccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC
Confidence 1223 79999999999999999999999999999 5999999999999999983
Q ss_pred cCCCCCCCCCCCCHHHHHHHH--hhcCCCCCCCCCccccc---CCCCCccchHhHHHhhh--------------------
Q 039451 211 NFSKTSQSDPAMNPQYADRLR--KLCENYTKQPEMSAFID---VFTPGKFDNMYYKNLKH-------------------- 265 (344)
Q Consensus 211 ~f~g~~~~dp~ld~~~~~~L~--~~Cp~~~~~~~~~~~lD---~~Tp~~FDN~Yy~~l~~-------------------- 265 (344)
+||.+++.|++.|+ +.||.+..++.....+| +.||.+|||+||++|++
T Consensus 258 -------~dP~~~~~~~~gLgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~ 330 (409)
T cd00649 258 -------PEPEAAPIEQQGLGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNA 330 (409)
T ss_pred -------CCCCcCHHHHHhhcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCc
Confidence 69999999999996 89997542233355688 57999999999999998
Q ss_pred ----------------cCccccchhhhhcCCCCHHHHHHhhhCHHHHHHHHHHHHHHh--hcCCCCCCCC
Q 039451 266 ----------------GLGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKL--GVYNLKQGND 317 (344)
Q Consensus 266 ----------------~~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km--~~igv~tg~~ 317 (344)
++|+|+||++|+.|++++++|++||.|++.||++|++||+|| +.+||++--.
T Consensus 331 ~~~~~~~d~~~~~~~~~~gmL~SD~aL~~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~ 400 (409)
T cd00649 331 AGENTVPDAHDPSKKHAPMMLTTDLALRFDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYL 400 (409)
T ss_pred cccccCCCccccccccCcccchhhHhhhcCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhc
Confidence 568999999999999999999999999999999999999999 6888887433
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=3.9e-53 Score=439.23 Aligned_cols=270 Identities=21% Similarity=0.223 Sum_probs=227.8
Q ss_pred cCccc-cccCCCCh-HHHHHHHHHHHHhhC--------CCchhhHHHHHhhccCC-------CCCC-cceecccCCCCcC
Q 039451 27 LALNY-YNSTCPQF-PLIMQQVITDKQLSA--------PATAAGVLRLFLHDCLV-------DGCD-ASVLITSNAFHKS 88 (344)
Q Consensus 27 L~~~f-Y~~sCP~~-e~iVr~~v~~~~~~d--------~~~aa~llRL~FHDcfv-------~GcD-gSilld~~~~~~~ 88 (344)
+-.+| |.+.+-+. .+.||+++++.+... ...+|-+|||+||++.+ +||+ |+|.+ .+
T Consensus 39 ~~~~f~y~~~~~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf------~P 112 (716)
T TIGR00198 39 MGEDFDYAEEFQQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRF------AP 112 (716)
T ss_pred CCCCccHHHHhhhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceec------cc
Confidence 33444 44444332 256999999998864 47899999999999986 6884 77766 56
Q ss_pred ccccCCCCCCCcchhhHHHHHHHHHHhhCCCCCCHHHHHHHhhhhhhhhcCCCCeeeeCCCCCCCCccc-----------
Q 039451 89 ERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDA----------- 157 (344)
Q Consensus 89 Ek~~~~N~~L~~rg~~~Id~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~----------- 157 (344)
|++++.|.+| .+++.++++||++ ||++|||||||+||+++||+.+|||.|+|.+||+|+..+..
T Consensus 113 ~~sw~~N~~L-dka~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l 187 (716)
T TIGR00198 113 LNSWPDNVNL-DKARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWL 187 (716)
T ss_pred ccCchhhhhH-HHHHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchh
Confidence 9999999985 6789999999885 79999999999999999999999999999999999953220
Q ss_pred ---------------c----------cCCCCCCCCCCCHHHHHHHHHhCCCChhhhhhhc-cCccccccccccccccccc
Q 039451 158 ---------------S----------HVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALV-GGHTIGFAHCKEFADRIFN 211 (344)
Q Consensus 158 ---------------~----------~~~~~LP~p~~~~~~l~~~F~~~Glt~~dlVaLs-GaHTiG~~hc~~f~~Rl~~ 211 (344)
. +....+|+|..++.+|++.|++||||++|||||+ ||||||++||.+|.+||
T Consensus 188 ~~~~~~~~~l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl-- 265 (716)
T TIGR00198 188 TSSREDRESLENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI-- 265 (716)
T ss_pred hccccccccccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC--
Confidence 0 1122699999999999999999999999999995 99999999999999998
Q ss_pred CCCCCCCCCCCCHHHHHHHHhhcCCCC-CC-CCCccccc---CCCCCccchHhHHHhhhc--------------------
Q 039451 212 FSKTSQSDPAMNPQYADRLRKLCENYT-KQ-PEMSAFID---VFTPGKFDNMYYKNLKHG-------------------- 266 (344)
Q Consensus 212 f~g~~~~dp~ld~~~~~~L~~~Cp~~~-~~-~~~~~~lD---~~Tp~~FDN~Yy~~l~~~-------------------- 266 (344)
++||++++.|++.|+.+||.+. .+ +.....+| +.||.+|||+||+||+.+
T Consensus 266 -----g~dP~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~ 340 (716)
T TIGR00198 266 -----GPDPEGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAP 340 (716)
T ss_pred -----CCCCCcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccc
Confidence 2799999999999999998532 12 22246677 579999999999999974
Q ss_pred --------------CccccchhhhhcCCCCHHHHHHhhhCHHHHHHHHHHHHHHhhc--CCCCC
Q 039451 267 --------------LGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGV--YNLKQ 314 (344)
Q Consensus 267 --------------~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~--igv~t 314 (344)
+++|+||++|..|++++++|+.||.|++.|+++|++||+||++ +|++.
T Consensus 341 ~~~p~~~~~~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~ 404 (716)
T TIGR00198 341 EIIPDVEDPNKKHNPIMLDADLALRFDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKS 404 (716)
T ss_pred cccccccccccccccCccchhHHhccCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchh
Confidence 6899999999999999999999999999999999999999994 56544
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=4.7e-50 Score=414.21 Aligned_cols=270 Identities=20% Similarity=0.239 Sum_probs=228.7
Q ss_pred cCccc-cccCCCCh-HHHHHHHHHHHHhhC--------CCchhhHHHHHhhccCC-------CCCC-cceecccCCCCcC
Q 039451 27 LALNY-YNSTCPQF-PLIMQQVITDKQLSA--------PATAAGVLRLFLHDCLV-------DGCD-ASVLITSNAFHKS 88 (344)
Q Consensus 27 L~~~f-Y~~sCP~~-e~iVr~~v~~~~~~d--------~~~aa~llRL~FHDcfv-------~GcD-gSilld~~~~~~~ 88 (344)
+-.+| |.+.+-.. .+.||++|++.+... ...+|.+|||+||++.+ +||+ |+|.+ .+
T Consensus 41 ~~~~f~y~~~~~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf------~p 114 (726)
T PRK15061 41 MGEDFDYAEEFKKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRF------AP 114 (726)
T ss_pred CCCCCCHHHHhchhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccC------cc
Confidence 33444 44444332 357999999998864 47899999999999986 6886 67766 56
Q ss_pred ccccCCCCCCCcchhhHHHHHHHHHHhhCCCCCCHHHHHHHhhhhhhhhcCCCCeeeeCCCCCCCCcccc----------
Q 039451 89 ERDADVNLPLPGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDAS---------- 158 (344)
Q Consensus 89 Ek~~~~N~~L~~rg~~~Id~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~---------- 158 (344)
|++++.|.+| .++..++++||+++ |..||+||+|+||+.+|||.+|||.|++.+||.|...+...
T Consensus 115 e~~w~~N~gL-~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l 189 (726)
T PRK15061 115 LNSWPDNVNL-DKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWL 189 (726)
T ss_pred cccchhhhhH-HHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCcccccc
Confidence 9999999985 68999999999998 56799999999999999999999999999999998754320
Q ss_pred ----------------------------cCCCCCCCCCCCHHHHHHHHHhCCCChhhhhhhc-cCccccccccccccccc
Q 039451 159 ----------------------------HVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALV-GGHTIGFAHCKEFADRI 209 (344)
Q Consensus 159 ----------------------------~~~~~LP~p~~~~~~l~~~F~~~Glt~~dlVaLs-GaHTiG~~hc~~f~~Rl 209 (344)
+....+|+|..++.+|++.|++||||++|+|||+ ||||||++||..|.+||
T Consensus 190 ~~~~r~~~~~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl 269 (726)
T PRK15061 190 GGDERYSGERDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV 269 (726)
T ss_pred ccccccccccccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc
Confidence 0112389999999999999999999999999995 99999999999999998
Q ss_pred ccCCCCCCCCCCCCHHHHHHHH--hhcCCCCCCCCCccccc---CCCCCccchHhHHHhhhc------------------
Q 039451 210 FNFSKTSQSDPAMNPQYADRLR--KLCENYTKQPEMSAFID---VFTPGKFDNMYYKNLKHG------------------ 266 (344)
Q Consensus 210 ~~f~g~~~~dp~ld~~~~~~L~--~~Cp~~~~~~~~~~~lD---~~Tp~~FDN~Yy~~l~~~------------------ 266 (344)
.+||.+++.|++.|. +.||.+...++.+..+| +.||.+|||+||++|+.+
T Consensus 270 -------gpdP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~ 342 (726)
T PRK15061 270 -------GPEPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKD 342 (726)
T ss_pred -------CCCCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccC
Confidence 269999999999985 89997531233355688 579999999999999984
Q ss_pred ------------------CccccchhhhhcCCCCHHHHHHhhhCHHHHHHHHHHHHHHhhc--CCCCC
Q 039451 267 ------------------LGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGV--YNLKQ 314 (344)
Q Consensus 267 ------------------~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~--igv~t 314 (344)
++||+||++|..||+++++|++||.|+++|+++|++||+||++ +|+++
T Consensus 343 ~~~~~~~pd~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ 410 (726)
T PRK15061 343 GAAEDTVPDAHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKS 410 (726)
T ss_pred ccccccCCcccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchh
Confidence 5899999999999999999999999999999999999999954 66655
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=2.4e-50 Score=377.75 Aligned_cols=232 Identities=23% Similarity=0.282 Sum_probs=184.8
Q ss_pred cCccccccCCCChHHHHHHHHHHHHhhCCCchhhHHHHHhhccC-------CCCCCcceecccCCCCcCccc-cCCCCCC
Q 039451 27 LALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDCL-------VDGCDASVLITSNAFHKSERD-ADVNLPL 98 (344)
Q Consensus 27 L~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDcf-------v~GcDgSilld~~~~~~~Ek~-~~~N~~L 98 (344)
++.+||.+. ..+.|...-..+...+++++|++|||+||||| ++||||||+++.+ .+|+. .+.|.
T Consensus 14 ~~~g~~~~~---f~~~v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~---~~En~G~~~n~-- 85 (264)
T cd08201 14 LQSGYSARG---FVAGVTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELD---RPENIGSGFNT-- 85 (264)
T ss_pred hcccceecc---cccccccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCC---ChhhccCchhh--
Confidence 445555542 22233333344555889999999999999999 8999999999732 46777 45555
Q ss_pred CcchhhHHHHHHHHHHhhCCCCCCHHHHHHHhhhhhhhhcCCCCeeeeCCCCCCCCcccccCCCCCCCCCCCHHHHHHHH
Q 039451 99 PGDAFDLVTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDASHVQGNIPTTNLSLSQIIDVF 178 (344)
Q Consensus 99 ~~rg~~~Id~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~~~~~~LP~p~~~~~~l~~~F 178 (344)
++++|+.|+.+ +||||||||||||+||+.+|||.|+|++||+|++++.. . .||.|+.++++|++.|
T Consensus 86 ~l~~~~~i~~~----------~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~---~-glP~P~~~v~~l~~~F 151 (264)
T cd08201 86 TLNFFVNFYSP----------RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQ---A-GVPEPQTDLGTTTESF 151 (264)
T ss_pred ccccceeeccC----------ccCHHHHHHHHHHHHHHHcCCCeecccccCCCcccccc---c-cCCCCccCHHHHHHHH
Confidence 57889887643 59999999999999999999999999999999998863 3 4999999999999999
Q ss_pred HhCCCChhhhhhhcc-CcccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCcccccCCCCCccch
Q 039451 179 GSKGLSVQEMVALVG-GHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGKFDN 257 (344)
Q Consensus 179 ~~~Glt~~dlVaLsG-aHTiG~~hc~~f~~Rl~~f~g~~~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~~lD~~Tp~~FDN 257 (344)
+++||+++|||+|+| |||||++||..|.+++- |.. .++...++| .||.+|||
T Consensus 152 a~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~---------~g~-----------------~~~~~~p~d-stp~~FDn 204 (264)
T cd08201 152 RRQGFSTSEMIALVACGHTLGGVHSEDFPEIVP---------PGS-----------------VPDTVLQFF-DTTIQFDN 204 (264)
T ss_pred HHcCCChHHHheeecCCeeeeecccccchhhcC---------Ccc-----------------ccCCCCCCC-CCccccch
Confidence 999999999999996 99999999998876641 100 001234577 69999999
Q ss_pred HhHHHhhhcCc----------cccchhhhhcCCCCHHHHHHhhhCHHHHHHHHHHHHHHhhc
Q 039451 258 MYYKNLKHGLG----------LLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGV 309 (344)
Q Consensus 258 ~Yy~~l~~~~g----------lL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 309 (344)
+||.+++.+.. .+.||..++....-. .++..| +++.|.+.++..|.||.+
T Consensus 205 ~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~-t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 205 KVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNV-TMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred HHHHHHhcCCCCCceeecCCCCccchhhheecCccH-HHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 99999998642 358999999866544 456777 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=2.1e-39 Score=307.52 Aligned_cols=220 Identities=18% Similarity=0.248 Sum_probs=179.8
Q ss_pred HHHHHHHhhCCCchhhHHHHHhhccCC-------CCCCcc-eecccCCCCcCccccCCCCC--CCcchhhHHHHHHHHHH
Q 039451 45 QVITDKQLSAPATAAGVLRLFLHDCLV-------DGCDAS-VLITSNAFHKSERDADVNLP--LPGDAFDLVTRAKTALE 114 (344)
Q Consensus 45 ~~v~~~~~~d~~~aa~llRL~FHDcfv-------~GcDgS-illd~~~~~~~Ek~~~~N~~--L~~rg~~~Id~iK~~le 114 (344)
+.+++.+......++.||||+||++.+ +|++|+ |.| .+|++|+.|.+ | -+.+.++++||+++.
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl------~pe~~w~~N~~~~L-~~~~~~Le~ik~~~~ 89 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRL------APQKDWEVNEPEEL-AKVLAVLEGIQKEFN 89 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccC------ccccCcCccCcHHH-HHHHHHHHHHHHHhc
Confidence 567777788888999999999999986 799999 665 57999999997 5 568899999999983
Q ss_pred hh-CC-CCCCHHHHHHHhhhhhhhhcCC-----CCeeeeCCCCCCCCcccccCC---CCCCCCC------------CCHH
Q 039451 115 LQ-CP-GVVSCSDIISVATRNLLVMVGG-----PHYKVLLGRKDSIVSDASHVQ---GNIPTTN------------LSLS 172 (344)
Q Consensus 115 ~~-cp-~~VScADilalAar~AV~~~GG-----P~~~v~~GRrD~~~s~~~~~~---~~LP~p~------------~~~~ 172 (344)
.. -+ ..||.||+|+||+..|||.+|| |.|++.+||.|.+.+.. +++ ..+|.+. .+.+
T Consensus 90 ~~~~~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~t-d~~sf~~l~P~adg~rny~~~~~~~~~~~ 168 (297)
T cd08200 90 ESQSGGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQT-DVESFEVLEPKADGFRNYLKKGYRVPPEE 168 (297)
T ss_pred ccccCCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCC-CcccccccCCCCcccccccccCCCCCHHH
Confidence 21 11 2699999999999999999999 99999999999987642 222 1345332 2357
Q ss_pred HHHHHHHhCCCChhhhhhhccCc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCcccccCCC
Q 039451 173 QIIDVFGSKGLSVQEMVALVGGH-TIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFT 251 (344)
Q Consensus 173 ~l~~~F~~~Glt~~dlVaLsGaH-TiG~~hc~~f~~Rl~~f~g~~~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~~lD~~T 251 (344)
.|++.|.++|||++|||||+||| ++|..|..+ +. ++|+ .+
T Consensus 169 ~Lrd~f~rlglsd~EmvaL~Gg~r~lG~~~~~s-------~~--------------------------G~wT------~~ 209 (297)
T cd08200 169 MLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KH--------------------------GVFT------DR 209 (297)
T ss_pred HHHHHHHhCCCChHHHhheecchhhcccCCCCC-------CC--------------------------CCCc------CC
Confidence 79999999999999999999998 699887432 11 2233 58
Q ss_pred CCccchHhHHHhhhc--------------------Cc-----cccchhhhhcCCCCHHHHHHhhhC--HHHHHHHHHHHH
Q 039451 252 PGKFDNMYYKNLKHG--------------------LG-----LLQTDQDIAVDGRTKPFVDLYAAN--ETAFFQAFANAM 304 (344)
Q Consensus 252 p~~FDN~Yy~~l~~~--------------------~g-----lL~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am 304 (344)
|.+|||.||++|+.. .| .+.+|..|.+|++.|++|+.||.| +++||+||++||
T Consensus 210 p~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~F~~DF~~A~ 289 (297)
T cd08200 210 PGVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEKFVKDFVAAW 289 (297)
T ss_pred CCccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 999999999999851 01 267899999999999999999998 999999999999
Q ss_pred HHhhcCC
Q 039451 305 EKLGVYN 311 (344)
Q Consensus 305 ~Km~~ig 311 (344)
.|++++.
T Consensus 290 ~Klmeld 296 (297)
T cd08200 290 TKVMNLD 296 (297)
T ss_pred HHHHhcC
Confidence 9999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.3e-34 Score=301.27 Aligned_cols=222 Identities=17% Similarity=0.244 Sum_probs=178.3
Q ss_pred HHHHHHHHHH---HhhCCCchhhHHHHHhhccCC-------CCCCcc-eecccCCCCcCccccCCC--CCCCcchhhHHH
Q 039451 41 LIMQQVITDK---QLSAPATAAGVLRLFLHDCLV-------DGCDAS-VLITSNAFHKSERDADVN--LPLPGDAFDLVT 107 (344)
Q Consensus 41 ~iVr~~v~~~---~~~d~~~aa~llRL~FHDcfv-------~GcDgS-illd~~~~~~~Ek~~~~N--~~L~~rg~~~Id 107 (344)
++|+++|.+. +....-..+.||||+||++.+ +|++|+ |.| .+|++++.| .+| .+.+.+++
T Consensus 428 ~~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl------~pe~~w~~N~p~gL-~~vl~~Le 500 (716)
T TIGR00198 428 TLSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRL------EPQKNWPVNEPTRL-AKVLAVLE 500 (716)
T ss_pred hhHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeec------chhcCcccCCHHHH-HHHHHHHH
Confidence 3456666664 456677889999999999986 799999 766 469999999 764 67899999
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHhhhhhhhhc---CCC--CeeeeCCCCCCCCcccccCCCCCC-----CC----------
Q 039451 108 RAKTALELQCPGVVSCSDIISVATRNLLVMV---GGP--HYKVLLGRKDSIVSDASHVQGNIP-----TT---------- 167 (344)
Q Consensus 108 ~iK~~le~~cp~~VScADilalAar~AV~~~---GGP--~~~v~~GRrD~~~s~~~~~~~~LP-----~p---------- 167 (344)
.||+++.. ..||.||+|+||+..|||.+ ||| .+++.+||.|.+.... ++++..| +.
T Consensus 501 ~Ik~~f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~ 576 (716)
T TIGR00198 501 KIQAEFAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYA 576 (716)
T ss_pred HHHHHcCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhcccccc
Confidence 99998831 26999999999999999999 998 5799999999987642 3333332 11
Q ss_pred CCCHHHHHHHHHhCCCChhhhhhhccC-cccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCccc
Q 039451 168 NLSLSQIIDVFGSKGLSVQEMVALVGG-HTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAF 246 (344)
Q Consensus 168 ~~~~~~l~~~F~~~Glt~~dlVaLsGa-HTiG~~hc~~f~~Rl~~f~g~~~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~~ 246 (344)
....+.|++.|..+|||++|||||+|| |++|+.|..+ +. +.++
T Consensus 577 ~~~~~~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s-------~~--------------------------G~~T--- 620 (716)
T TIGR00198 577 VTPEELLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGS-------KH--------------------------GVFT--- 620 (716)
T ss_pred CCHHHHHHHHHHhCCCChHHHHheecchhhccccCCCC-------CC--------------------------CCCc---
Confidence 123566899999999999999999998 5999998532 11 2222
Q ss_pred ccCCCCCccchHhHHHhhhcC--------------------c---c--ccchhhhhcCCCCHHHHHHhhhCH--HHHHHH
Q 039451 247 IDVFTPGKFDNMYYKNLKHGL--------------------G---L--LQTDQDIAVDGRTKPFVDLYAANE--TAFFQA 299 (344)
Q Consensus 247 lD~~Tp~~FDN~Yy~~l~~~~--------------------g---l--L~SD~~L~~d~~t~~~V~~yA~d~--~~F~~~ 299 (344)
.+|.+|||.||+||+... | + ..+|..|.+|++.|++|+.||+|+ ++|++|
T Consensus 621 ---~~p~~f~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~F~~D 697 (716)
T TIGR00198 621 ---DRVGVLSNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREKFVKD 697 (716)
T ss_pred ---CCCCccccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccchHHHH
Confidence 579999999999998620 2 2 268999999999999999999997 899999
Q ss_pred HHHHHHHhhcCCC
Q 039451 300 FANAMEKLGVYNL 312 (344)
Q Consensus 300 Fa~Am~Km~~igv 312 (344)
|++||.|+++++-
T Consensus 698 F~~Aw~Klm~ldr 710 (716)
T TIGR00198 698 FVAAWTKVMNLDR 710 (716)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999999874
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=7.5e-34 Score=294.18 Aligned_cols=221 Identities=18% Similarity=0.254 Sum_probs=180.7
Q ss_pred HHHHHHHhhCCCchhhHHHHHhhccCC-------CCCCcc-eecccCCCCcCccccCCCC--CCCcchhhHHHHHHHHHH
Q 039451 45 QVITDKQLSAPATAAGVLRLFLHDCLV-------DGCDAS-VLITSNAFHKSERDADVNL--PLPGDAFDLVTRAKTALE 114 (344)
Q Consensus 45 ~~v~~~~~~d~~~aa~llRL~FHDcfv-------~GcDgS-illd~~~~~~~Ek~~~~N~--~L~~rg~~~Id~iK~~le 114 (344)
..+++.+....-..+.|||++||++.+ +|++|+ |.| .+|++++.|. +| .+.+++++.||+++.
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl------~Pq~~w~~N~p~~L-~~vl~~LE~Ik~~f~ 514 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRL------APQKDWEVNEPAQL-AKVLAVLEGIQAEFN 514 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceec------ccccCccccCHHHH-HHHHHHHHHHHHHHh
Confidence 466777777788899999999999986 799999 777 4699999999 64 578999999999996
Q ss_pred hhC--CCCCCHHHHHHHhhhhhhhhc---CC--CCeeeeCCCCCCCCcccccCCC---CCCCCC------------CCHH
Q 039451 115 LQC--PGVVSCSDIISVATRNLLVMV---GG--PHYKVLLGRKDSIVSDASHVQG---NIPTTN------------LSLS 172 (344)
Q Consensus 115 ~~c--p~~VScADilalAar~AV~~~---GG--P~~~v~~GRrD~~~s~~~~~~~---~LP~p~------------~~~~ 172 (344)
..- ...||.||+|+||+..|||.+ || |.|++.+||.|.+... .++++ .+|.+. ...+
T Consensus 515 ~~~~~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~-td~esf~~l~P~Adgfrny~~~~~~~~~e~ 593 (726)
T PRK15061 515 AAQSGGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQ-TDVESFAVLEPKADGFRNYLKKGYSVSPEE 593 (726)
T ss_pred hccCCCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCC-CCcccccccCCCCccccccccccCCCCHHH
Confidence 432 125999999999999999998 68 9999999999998753 33432 456543 1347
Q ss_pred HHHHHHHhCCCChhhhhhhccCc-ccccccccccccccccCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCcccccCCC
Q 039451 173 QIIDVFGSKGLSVQEMVALVGGH-TIGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFT 251 (344)
Q Consensus 173 ~l~~~F~~~Glt~~dlVaLsGaH-TiG~~hc~~f~~Rl~~f~g~~~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~~lD~~T 251 (344)
.|++.|.++|||+.|||||+||| ++|..|-.+ +. +.++ .+
T Consensus 594 ~L~d~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S-------~~--------------------------G~~T------~~ 634 (726)
T PRK15061 594 LLVDKAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KH--------------------------GVFT------DR 634 (726)
T ss_pred HHHHHHHhCCCChHHHhheecchhhcccCCCCC-------CC--------------------------CCCc------CC
Confidence 79999999999999999999997 688877331 11 2222 57
Q ss_pred CCccchHhHHHhhhc----------C----------c---c--ccchhhhhcCCCCHHHHHHhhhC--HHHHHHHHHHHH
Q 039451 252 PGKFDNMYYKNLKHG----------L----------G---L--LQTDQDIAVDGRTKPFVDLYAAN--ETAFFQAFANAM 304 (344)
Q Consensus 252 p~~FDN~Yy~~l~~~----------~----------g---l--L~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am 304 (344)
|.+|||.||+||+.. . | + +.+|..|.+|++.|++|+.||+| +++|++||++||
T Consensus 635 p~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~kF~~DF~~Aw 714 (726)
T PRK15061 635 PGVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEKFVRDFVAAW 714 (726)
T ss_pred CCccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 999999999999851 1 1 1 47899999999999999999999 999999999999
Q ss_pred HHhhcCCC
Q 039451 305 EKLGVYNL 312 (344)
Q Consensus 305 ~Km~~igv 312 (344)
.|+++++-
T Consensus 715 ~Kvmeldr 722 (726)
T PRK15061 715 TKVMNLDR 722 (726)
T ss_pred HHHHhCCC
Confidence 99999873
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.3e-30 Score=259.41 Aligned_cols=253 Identities=20% Similarity=0.230 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHhhC--------CCchhhHHHHHhhccCC-------CCCCcceecccCCCCcCccccCCCCCCCcchhhH
Q 039451 41 LIMQQVITDKQLSA--------PATAAGVLRLFLHDCLV-------DGCDASVLITSNAFHKSERDADVNLPLPGDAFDL 105 (344)
Q Consensus 41 ~iVr~~v~~~~~~d--------~~~aa~llRL~FHDcfv-------~GcDgSilld~~~~~~~Ek~~~~N~~L~~rg~~~ 105 (344)
..|++.+...+... ...+|-+|||+||-+.+ +|..+ ++.+|.++.++|.|.+| .+++.+
T Consensus 70 ~Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~-----G~qRFaPlnSWPDN~nL-DKarRL 143 (730)
T COG0376 70 AAVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGG-----GQQRFAPLNSWPDNANL-DKARRL 143 (730)
T ss_pred HHHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCC-----CceecccccCCCcccch-HHHHHH
Confidence 35666777766654 25799999999999986 23322 23456789999999985 789999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHhhhhhhhhcCCCCeeeeCCCCCCCCcccc---------------------------
Q 039451 106 VTRAKTALELQCPGVVSCSDIISVATRNLLVMVGGPHYKVLLGRKDSIVSDAS--------------------------- 158 (344)
Q Consensus 106 Id~iK~~le~~cp~~VScADilalAar~AV~~~GGP~~~v~~GRrD~~~s~~~--------------------------- 158 (344)
+.+||+++ ++.+|+||+|.|++.+|++.+|++++.+..||.|-..+...
T Consensus 144 LWPIKkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~Plaa 219 (730)
T COG0376 144 LWPIKKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAA 219 (730)
T ss_pred hhhHhHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhh
Confidence 99999998 77899999999999999999999999999999998877650
Q ss_pred ----------cCCCCCCCCCCCHHHHHHHHHhCCCChhhhhhhcc-CcccccccccccccccccCCCCCCCCCCCCHHHH
Q 039451 159 ----------HVQGNIPTTNLSLSQIIDVFGSKGLSVQEMVALVG-GHTIGFAHCKEFADRIFNFSKTSQSDPAMNPQYA 227 (344)
Q Consensus 159 ----------~~~~~LP~p~~~~~~l~~~F~~~Glt~~dlVaLsG-aHTiG~~hc~~f~~Rl~~f~g~~~~dp~ld~~~~ 227 (344)
+-.+..|+|..+..+++..|++|+++.+|.|||++ |||+|++|...-.+.+ +++|.-.+--.
T Consensus 220 vqMGLIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie~ 292 (730)
T COG0376 220 VQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIEQ 292 (730)
T ss_pred heeeeEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc-------CCCccccchhh
Confidence 12245899999999999999999999999999985 9999999976533222 35665443333
Q ss_pred HHH--HhhcCCCCCCCCC-ccccc---CCCCCccchHhHHHhhhc-----------------------------------
Q 039451 228 DRL--RKLCENYTKQPEM-SAFID---VFTPGKFDNMYYKNLKHG----------------------------------- 266 (344)
Q Consensus 228 ~~L--~~~Cp~~~~~~~~-~~~lD---~~Tp~~FDN~Yy~~l~~~----------------------------------- 266 (344)
+-| .+.|..+. +.++ +..+. ..||++|||+||.+|+..
T Consensus 293 qGlGW~~~~g~G~-G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~ 371 (730)
T COG0376 293 QGLGWANTYGSGK-GPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHG 371 (730)
T ss_pred hccccccccCCCc-CcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccC
Confidence 333 23444322 2211 11111 268999999999999852
Q ss_pred CccccchhhhhcCCCCHHHHHHhhhCHHHHHHHHHHHHHHhhcCC
Q 039451 267 LGLLQTDQDIAVDGRTKPFVDLYAANETAFFQAFANAMEKLGVYN 311 (344)
Q Consensus 267 ~glL~SD~~L~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ig 311 (344)
..||++|.+|..||+.+++.++|..|++.|.+.|++||.||.+-+
T Consensus 372 p~MlttDlaLr~DP~Y~kIs~rf~e~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 372 PMMLTTDLALRFDPEYEKISRRFLEDPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred ceeeccchhhhcChHHHHHHHHHHhCHHHHHHHHHHHHHHHhhcc
Confidence 258999999999999999999999999999999999999998753
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.44 E-value=5.5e-13 Score=134.15 Aligned_cols=217 Identities=18% Similarity=0.308 Sum_probs=156.7
Q ss_pred HHHHHHHhhCCCchhhHHHHHhhccCC-------CCCCcc-eecccCCCCcCccccCCCCCCC-cchhhHHHHHHHHHHh
Q 039451 45 QVITDKQLSAPATAAGVLRLFLHDCLV-------DGCDAS-VLITSNAFHKSERDADVNLPLP-GDAFDLVTRAKTALEL 115 (344)
Q Consensus 45 ~~v~~~~~~d~~~aa~llRL~FHDcfv-------~GcDgS-illd~~~~~~~Ek~~~~N~~L~-~rg~~~Id~iK~~le~ 115 (344)
..++..+.+..-....|+-.+|-.+.+ +|.+|. |.| .+.|+|+.|..-. -+.+.+++.|.+...
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirL------aPqkdWevN~P~~l~kvl~~le~iq~~fn- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRL------APQKDWEVNQPAELAKVLAVLEKIQKEFN- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEee------cccccCCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 356667777788889999999998865 678877 556 4689999996411 257788888888875
Q ss_pred hCCCCCCHHHHHHHhhhhhhhhc---CCCCe--eeeCCCCCCCCcccccCCCC--C-CC--CC---------CC-HHHHH
Q 039451 116 QCPGVVSCSDIISVATRNLLVMV---GGPHY--KVLLGRKDSIVSDASHVQGN--I-PT--TN---------LS-LSQII 175 (344)
Q Consensus 116 ~cp~~VScADilalAar~AV~~~---GGP~~--~v~~GRrD~~~s~~~~~~~~--L-P~--p~---------~~-~~~l~ 175 (344)
..||.||+|+|++..|||.+ .|-.+ |+..||.|.+.... +++.. | |- .+ .+ -+-|+
T Consensus 525 ---kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqt-Dv~sf~~LeP~aDGfRNy~~~~~~~~pe~~Lv 600 (730)
T COG0376 525 ---KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQT-DVESFAVLEPIADGFRNYVKKDYVLTPEELLV 600 (730)
T ss_pred ---CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhc-chhhhhcccccchhhhhhccCCCcCCHHHHHH
Confidence 46999999999999999975 67654 66799999987542 22221 1 21 11 22 34478
Q ss_pred HHHHhCCCChhhhhhhccCcc-cccccccccccccccCCCCCCCCCCCCHHHHHHHHhhcCCCCCCCCCcccccCCCCCc
Q 039451 176 DVFGSKGLSVQEMVALVGGHT-IGFAHCKEFADRIFNFSKTSQSDPAMNPQYADRLRKLCENYTKQPEMSAFIDVFTPGK 254 (344)
Q Consensus 176 ~~F~~~Glt~~dlVaLsGaHT-iG~~hc~~f~~Rl~~f~g~~~~dp~ld~~~~~~L~~~Cp~~~~~~~~~~~lD~~Tp~~ 254 (344)
+.-+-.+||.-||++|+||-- +|.-+ .|+ ...+.- ..|..
T Consensus 601 DkAqlL~LtapemtVLiGGlRvLg~n~-----------g~s--------------------------~~GVfT--~~pg~ 641 (730)
T COG0376 601 DKAQLLTLTAPEMTVLIGGLRVLGANY-----------GGS--------------------------KHGVFT--DRPGV 641 (730)
T ss_pred HHHHHhccCCccceEEEcceEeeccCC-----------CCC--------------------------ccceec--cCccc
Confidence 888889999999999999753 33221 111 011111 35778
Q ss_pred cchHhHHHhhhc----------C----------cc-----ccchhhhhcCCCCHHHHHHhhhC--HHHHHHHHHHHHHHh
Q 039451 255 FDNMYYKNLKHG----------L----------GL-----LQTDQDIAVDGRTKPFVDLYAAN--ETAFFQAFANAMEKL 307 (344)
Q Consensus 255 FDN~Yy~~l~~~----------~----------gl-----L~SD~~L~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km 307 (344)
+.|.||.||+.- + |- -..|..+-++++.|.+.+.||.+ ++.|.+||..||.|.
T Consensus 642 LtndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ekFv~DFvaaw~kV 721 (730)
T COG0376 642 LTNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEKFVKDFVAAWTKV 721 (730)
T ss_pred ccchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 888888888752 1 21 25788888889999999999975 789999999999999
Q ss_pred hcCC
Q 039451 308 GVYN 311 (344)
Q Consensus 308 ~~ig 311 (344)
.++.
T Consensus 722 Mn~D 725 (730)
T COG0376 722 MNLD 725 (730)
T ss_pred hccc
Confidence 9875
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=70.74 E-value=55 Score=32.55 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=35.2
Q ss_pred cCCCCeeeeCCCCCCCCcccccCCCCCCC---CCCCHHHHHHHHHhCCCC----------hhhhhhhccCcc
Q 039451 138 VGGPHYKVLLGRKDSIVSDASHVQGNIPT---TNLSLSQIIDVFGSKGLS----------VQEMVALVGGHT 196 (344)
Q Consensus 138 ~GGP~~~v~~GRrD~~~s~~~~~~~~LP~---p~~~~~~l~~~F~~~Glt----------~~dlVaLsGaHT 196 (344)
+|-..+..+.||-+.............+. +-..+.++..+|++.|+. .+|+..|.|+|.
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~Im~ASfRn~~qi~~laG~D~ 251 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTIVMGASFRNTGEILELAGCDK 251 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeEEEecccCCHHHHHHHHCCCE
Confidence 47778899999996653322111111111 123577788888888875 455566666553
No 20
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=47.45 E-value=16 Score=28.85 Aligned_cols=34 Identities=24% Similarity=0.310 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCCcccccccccccCCCc
Q 039451 295 AFFQAFANAMEKLGVYNLKQGNDGEVRHRCHEFTNLNA 332 (344)
Q Consensus 295 ~F~~~Fa~Am~Km~~igv~tg~~GeiR~~C~~~n~~~~ 332 (344)
...++|..||.||+.+|... .---+|+.|.....
T Consensus 2 ~m~~~F~~am~KlavLG~d~----~~LiDCSdVIP~p~ 35 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGHDR----SDLIDCSDVIPVPK 35 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS-G----GGSEE-GGGS----
T ss_pred hHHHHHHHHHHHHHHhcCCh----hhcccchhhccCCC
Confidence 35678999999999997533 34458988775543
No 21
>PRK05269 transaldolase B; Provisional
Probab=46.99 E-value=1.9e+02 Score=28.51 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=30.4
Q ss_pred cCCCCeeeeCCCCCCCCcccccCCCC---CCCCCCCHHHHHHHHHhCCCChh
Q 039451 138 VGGPHYKVLLGRKDSIVSDASHVQGN---IPTTNLSLSQIIDVFGSKGLSVQ 186 (344)
Q Consensus 138 ~GGP~~~v~~GRrD~~~s~~~~~~~~---LP~p~~~~~~l~~~F~~~Glt~~ 186 (344)
+|-..+..+.||-|...-........ --++-..+.++...|++.|+..+
T Consensus 170 AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~ 221 (318)
T PRK05269 170 AGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTV 221 (318)
T ss_pred cCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCce
Confidence 47788899999998653221100000 11133458888889999998754
No 22
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.14 E-value=1.1e+02 Score=23.61 Aligned_cols=29 Identities=10% Similarity=0.342 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhCCCchhhHHHHHhhcc
Q 039451 41 LIMQQVITDKQLSAPATAAGVLRLFLHDC 69 (344)
Q Consensus 41 ~iVr~~v~~~~~~d~~~aa~llRL~FHDc 69 (344)
-|.|+.+.+.++++|.+-...||+.+---
T Consensus 23 fiark~~~k~lk~NPpine~~iR~M~~qm 51 (71)
T COG3763 23 FIARKQMKKQLKDNPPINEEMIRMMMAQM 51 (71)
T ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 38899999999999999999999998754
No 23
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=39.59 E-value=2.9e+02 Score=27.31 Aligned_cols=48 Identities=13% Similarity=0.096 Sum_probs=29.8
Q ss_pred hcCCCCeeeeCCCCCCCCcccccCCCCCC----CCCCCHHHHHHHHHhCCCCh
Q 039451 137 MVGGPHYKVLLGRKDSIVSDASHVQGNIP----TTNLSLSQIIDVFGSKGLSV 185 (344)
Q Consensus 137 ~~GGP~~~v~~GRrD~~~s~~~~~~~~LP----~p~~~~~~l~~~F~~~Glt~ 185 (344)
.+|-..+..+.||-|-........ ...+ ++-..+.++..+|++.|+..
T Consensus 167 ~AGa~~ISPFVgRi~dw~~~~~g~-~~~~~~~d~Gv~~v~~i~~~~k~~g~~T 218 (317)
T TIGR00874 167 EAKVTLISPFVGRILDWYKAATGK-KEYSIEEDPGVASVKKIYNYYKKHGYPT 218 (317)
T ss_pred HcCCCEEEeecchHhHhhhhccCc-cccccccCchHHHHHHHHHHHHHcCCCc
Confidence 357788999999997643221100 0111 23346778888999988764
No 24
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=33.64 E-value=3.4e+02 Score=27.56 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=30.0
Q ss_pred cCCCCeeeeCCCCCCCCcccccCCCCCCCCC----CCHHHHHHHHHhCCCCh
Q 039451 138 VGGPHYKVLLGRKDSIVSDASHVQGNIPTTN----LSLSQIIDVFGSKGLSV 185 (344)
Q Consensus 138 ~GGP~~~v~~GRrD~~~s~~~~~~~~LP~p~----~~~~~l~~~F~~~Glt~ 185 (344)
+|-..+..+.||.|........ ...+|... ..+.++..+|++.|+..
T Consensus 174 AGa~~ISPfVgRi~dw~~~~~g-~~~~~~~~dpGv~~v~~i~~~~~~~~~~T 224 (391)
T PRK12309 174 AGVTLISPFVGRILDWYKKETG-RDSYPGAEDPGVQSVTQIYNYYKKFGYKT 224 (391)
T ss_pred cCCCEEEeecchhhhhhhhccC-CCccccccchHHHHHHHHHHHHHhcCCCc
Confidence 5778899999998875432111 11244333 24777888888888753
No 25
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=30.16 E-value=23 Score=30.58 Aligned_cols=45 Identities=22% Similarity=0.268 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhhhhhcccccCccccccCCCChHHHHHHHHHHHHhhCCCchhhHHHHHhhcc
Q 039451 8 SIVLISCSFLTIIQRTQSQLALNYYNSTCPQFPLIMQQVITDKQLSAPATAAGVLRLFLHDC 69 (344)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~L~~~fY~~sCP~~e~iVr~~v~~~~~~d~~~aa~llRL~FHDc 69 (344)
+++|.+++.|+....-...-...+|-++|-+.- -|.=.|-+|||=
T Consensus 115 SvClSIlSMLSSs~eKqrP~Dn~~Yvk~C~~gr-----------------sPk~TrWwfHDD 159 (161)
T KOG0427|consen 115 SVCLSILSMLSSSKEKQRPTDNDRYVKNCKNGR-----------------SPKETRWWFHDD 159 (161)
T ss_pred HHHHHHHHHHccCccccCCCccchhhhhccCCC-----------------CcccceeeeccC
Confidence 344444444443333334577889999997642 344568899983
No 26
>PF15240 Pro-rich: Proline-rich
Probab=28.36 E-value=41 Score=30.59 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHhhhhh
Q 039451 7 ISIVLISCSFLTIIQR 22 (344)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (344)
|+|||+.+.||+|.++
T Consensus 1 MLlVLLSvALLALSSA 16 (179)
T PF15240_consen 1 MLLVLLSVALLALSSA 16 (179)
T ss_pred ChhHHHHHHHHHhhhc
Confidence 3456666666666654
No 27
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=21.60 E-value=1.5e+02 Score=25.82 Aligned_cols=42 Identities=24% Similarity=0.373 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHhhhh-hcccccCccccccCCCChHHHHHHHHHHHHh
Q 039451 6 SISIVLISCSFLTIIQ-RTQSQLALNYYNSTCPQFPLIMQQVITDKQL 52 (344)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~~~~L~~~fY~~sCP~~e~iVr~~v~~~~~ 52 (344)
.++++|++++++...+ ++..+|.-+|+..+ -.|.+.|+..+.
T Consensus 11 ~lal~L~~~l~l~~c~~~~~~~Ltg~Y~~DT-----~~Vi~tlr~~i~ 53 (135)
T TIGR03044 11 ALALVLGLCLLLTACSGAAKTRLTGDYVEDT-----LAVIQTLREAID 53 (135)
T ss_pred HHHHHHHHHHHHhcccCCCcccccchHHHHH-----HHHHHHHHHHHc
Confidence 4677777777666443 23356888886652 233455555444
Done!