Your job contains 1 sequence.
>039453
MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI
DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF
TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM
TPDRHLGAARIDRLQLDLLITE
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 039453
(202 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2065368 - symbol:CPSF73-II "AT2G01730" species... 911 2.1e-91 1
DICTYBASE|DDB_G0278189 - symbol:ints11 "integrator comple... 769 2.4e-76 1
MGI|MGI:1919207 - symbol:Cpsf3l "cleavage and polyadenyla... 726 8.6e-72 1
RGD|1306841 - symbol:Cpsf3l "cleavage and polyadenylation... 726 8.6e-72 1
UNIPROTKB|F1NV30 - symbol:CPSF3L "Integrator complex subu... 725 1.1e-71 1
UNIPROTKB|Q5ZIH0 - symbol:CPSF3L "Integrator complex subu... 725 1.1e-71 1
UNIPROTKB|E2QY53 - symbol:CPSF3L "Uncharacterized protein... 717 7.7e-71 1
UNIPROTKB|E9PNS4 - symbol:CPSF3L "Integrator complex subu... 716 9.9e-71 1
UNIPROTKB|Q5TA45 - symbol:CPSF3L "Integrator complex subu... 716 9.9e-71 1
UNIPROTKB|E9PI75 - symbol:CPSF3L "Integrator complex subu... 712 2.6e-70 1
UNIPROTKB|G3V1S5 - symbol:CPSF3L "Integrator complex subu... 712 2.6e-70 1
UNIPROTKB|E9PIG1 - symbol:CPSF3L "Integrator complex subu... 707 8.9e-70 1
UNIPROTKB|F1RJE8 - symbol:CPSF3L "Uncharacterized protein... 705 1.4e-69 1
UNIPROTKB|Q2YDM2 - symbol:CPSF3L "Integrator complex subu... 704 1.8e-69 1
UNIPROTKB|E1B7Q9 - symbol:CPSF3L "Integrator complex subu... 700 4.9e-69 1
FB|FBgn0039691 - symbol:IntS11 "Integrator 11" species:72... 693 2.7e-68 1
WB|WBGene00008642 - symbol:F10B5.8 species:6239 "Caenorha... 653 4.7e-64 1
ZFIN|ZDB-GENE-050522-13 - symbol:cpsf3l "cleavage and pol... 599 2.5e-58 1
UNIPROTKB|C9J979 - symbol:CPSF3L "Integrator complex subu... 489 2.0e-49 2
GENEDB_PFALCIPARUM|PFC0825c - symbol:PFC0825c "cleavage a... 197 1.3e-45 3
UNIPROTKB|O77371 - symbol:PFC0825c "Cleavage and polyaden... 197 1.3e-45 3
UNIPROTKB|E9PIL7 - symbol:CPSF3L "Integrator complex subu... 465 3.9e-44 1
TAIR|locus:2206076 - symbol:CPSF73-I "cleavage and polyad... 400 1.4e-36 1
UNIPROTKB|E9PQF0 - symbol:CPSF3L "Integrator complex subu... 369 5.8e-34 1
DICTYBASE|DDB_G0274799 - symbol:cpsf3 "cleavage and polya... 367 7.9e-33 1
ZFIN|ZDB-GENE-030131-3275 - symbol:cpsf3 "cleavage and po... 359 4.1e-32 1
RGD|1305767 - symbol:Cpsf3 "cleavage and polyadenylation ... 357 6.6e-32 1
UNIPROTKB|P79101 - symbol:CPSF3 "Cleavage and polyadenyla... 356 8.4e-32 1
UNIPROTKB|Q9UKF6 - symbol:CPSF3 "Cleavage and polyadenyla... 356 8.4e-32 1
MGI|MGI:1859328 - symbol:Cpsf3 "cleavage and polyadenylat... 356 8.4e-32 1
UNIPROTKB|F1NKW5 - symbol:CPSF3 "Uncharacterized protein"... 356 8.4e-32 1
UNIPROTKB|G3V6W7 - symbol:Cpsf3 "Protein Cpsf3" species:1... 356 8.4e-32 1
UNIPROTKB|E2R7R2 - symbol:CPSF3 "Uncharacterized protein"... 356 9.8e-32 1
POMBASE|SPAC17G6.16c - symbol:ysh1 "mRNA cleavage and pol... 356 1.1e-31 1
UNIPROTKB|I3LKR1 - symbol:CPSF3 "Uncharacterized protein"... 354 1.4e-31 1
FB|FBgn0261065 - symbol:Cpsf73 "Cleavage and polyadenylat... 347 8.0e-31 1
WB|WBGene00013460 - symbol:cpsf-3 species:6239 "Caenorhab... 346 1.1e-30 1
CGD|CAL0005344 - symbol:orf19.5486 species:5476 "Candida ... 333 4.8e-29 1
UNIPROTKB|Q59P50 - symbol:YSH1 "Endoribonuclease YSH1" sp... 333 4.8e-29 1
SGD|S000004267 - symbol:YSH1 "Putative endoribonuclease" ... 326 2.1e-28 1
ASPGD|ASPL0000060573 - symbol:AN0990 species:162425 "Emer... 307 3.0e-26 1
GENEDB_PFALCIPARUM|PF14_0364 - symbol:PF14_0364 "cleavage... 187 4.9e-24 2
UNIPROTKB|Q8IL83 - symbol:PF14_0364 "Cleavage and polyade... 187 4.9e-24 2
UNIPROTKB|G5E9W3 - symbol:CPSF3 "Cleavage and polyadenyla... 281 9.8e-24 1
FB|FBgn0027873 - symbol:Cpsf100 "Cleavage and polyadenyla... 217 1.0e-16 1
UNIPROTKB|C9JZH6 - symbol:CPSF3 "Cleavage and polyadenyla... 206 1.1e-16 1
WB|WBGene00017313 - symbol:cpsf-2 species:6239 "Caenorhab... 203 3.9e-15 1
UNIPROTKB|O17403 - symbol:cpsf-2 "Probable cleavage and p... 203 3.9e-15 1
DICTYBASE|DDB_G0270392 - symbol:cpsf2 "cleavage and polya... 192 5.2e-14 1
UNIPROTKB|Q81SC3 - symbol:BA_1737 "Metallo-beta-lactamase... 184 1.2e-13 1
TIGR_CMR|BA_1737 - symbol:BA_1737 "metallo-beta-lactamase... 184 1.2e-13 1
UNIPROTKB|Q8EJC6 - symbol:SO_0541 "RNA-metabolizing metal... 176 1.2e-12 1
TIGR_CMR|SO_0541 - symbol:SO_0541 "metallo-beta-lactamase... 176 1.2e-12 1
TAIR|locus:2172843 - symbol:CPSF100 "cleavage and polyade... 178 1.5e-12 1
TIGR_CMR|CPS_2623 - symbol:CPS_2623 "metallo-beta-lactama... 170 4.7e-12 1
UNIPROTKB|F1SD85 - symbol:CPSF2 "Uncharacterized protein"... 161 3.2e-11 1
UNIPROTKB|Q9KV92 - symbol:VC_0264 "Putative uncharacteriz... 162 3.5e-11 1
TIGR_CMR|VC_0264 - symbol:VC_0264 "conserved hypothetical... 162 3.5e-11 1
MGI|MGI:1861601 - symbol:Cpsf2 "cleavage and polyadenylat... 164 5.2e-11 1
RGD|1309687 - symbol:Cpsf2 "cleavage and polyadenylation ... 164 5.2e-11 1
TIGR_CMR|CHY_2049 - symbol:CHY_2049 "metallo-beta-lactama... 161 5.5e-11 1
UNIPROTKB|Q10568 - symbol:CPSF2 "Cleavage and polyadenyla... 161 1.1e-10 1
UNIPROTKB|E2R496 - symbol:CPSF2 "Uncharacterized protein"... 161 1.1e-10 1
UNIPROTKB|Q9P2I0 - symbol:CPSF2 "Cleavage and polyadenyla... 161 1.1e-10 1
UNIPROTKB|F1NMN0 - symbol:CPSF2 "Uncharacterized protein"... 154 6.1e-10 1
ZFIN|ZDB-GENE-040718-79 - symbol:cpsf2 "cleavage and poly... 151 1.3e-09 1
UNIPROTKB|Q9W799 - symbol:cpsf2 "Cleavage and polyadenyla... 148 2.7e-09 1
UNIPROTKB|Q74C32 - symbol:GSU1843 "RNA exonuclease, beta-... 145 1.3e-08 1
TIGR_CMR|GSU_1843 - symbol:GSU_1843 "metallo-beta-lactama... 145 1.3e-08 1
TIGR_CMR|DET_1061 - symbol:DET_1061 "metallo-beta-lactama... 144 2.0e-08 1
UNIPROTKB|H0YBH8 - symbol:INTS9 "Integrator complex subun... 110 6.6e-06 2
TIGR_CMR|DET_0438 - symbol:DET_0438 "metallo-beta-lactama... 116 0.00016 2
FB|FBgn0036570 - symbol:IntS9 "Integrator 9" species:7227... 92 0.00016 2
TAIR|locus:2167336 - symbol:emb2746 "embryo defective 274... 116 0.00037 1
POMBASE|SPBC1709.15c - symbol:cft2 "cleavage factor two C... 114 0.00055 1
>TAIR|locus:2065368 [details] [associations]
symbol:CPSF73-II "AT2G01730" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0010197 "polar nucleus
fusion" evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0006397 GO:GO:0090305 EMBL:AC006069
GO:GO:0004518 GO:GO:0010197 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 EMBL:AY168923
EMBL:AK221561 IPI:IPI00536069 PIR:D84428 RefSeq:NP_178282.2
UniGene:At.42473 ProteinModelPortal:Q8GUU3 SMR:Q8GUU3 IntAct:Q8GUU3
STRING:Q8GUU3 PaxDb:Q8GUU3 PRIDE:Q8GUU3 EnsemblPlants:AT2G01730.1
GeneID:814702 KEGG:ath:AT2G01730 TAIR:At2g01730
HOGENOM:HOG000231294 InParanoid:Q56XW2 KO:K13148 OMA:MAVEYMS
Genevestigator:Q8GUU3 Uniprot:Q8GUU3
Length = 613
Score = 911 (325.7 bits), Expect = 2.1e-91, P = 2.1e-91
Identities = 163/202 (80%), Positives = 189/202 (93%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
MAIDCLVLGAGQE+GKSCVVVTINGK+IMFDCGMHM +DH +YP+FS ISKS DF+NAI
Sbjct: 1 MAIDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAI 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
CI+ITHFH+DH+GALP+FTE+CGYNGPIYM+YPT+AL+P+MLEDYR+V+VDRRGE E F
Sbjct: 61 SCIIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T+ HIA CMKKVIA+DLKQT+QVD+DLQIRAYYAGHVLGA M YAK+GD+A+VYTGDYNM
Sbjct: 121 TTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
T DRHLGAA+IDRLQLDLLI+E
Sbjct: 181 TTDRHLGAAKIDRLQLDLLISE 202
>DICTYBASE|DDB_G0278189 [details] [associations]
symbol:ints11 "integrator complex subunit 11"
species:44689 "Dictyostelium discoideum" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0278189 Pfam:PF07521 GO:GO:0005634 GO:GO:0005737
GenomeReviews:CM000152_GR EMBL:AAFI02000023 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 RefSeq:XP_642189.1
ProteinModelPortal:Q54YL3 PRIDE:Q54YL3 EnsemblProtists:DDB0234100
GeneID:8621396 KEGG:ddi:DDB_G0278189 OMA:RTIANET
ProtClustDB:CLSZ2729107 Uniprot:Q54YL3
Length = 744
Score = 769 (275.8 bits), Expect = 2.4e-76, P = 2.4e-76
Identities = 137/202 (67%), Positives = 170/202 (84%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
M I + LGAGQ+VG+SCV+VTI K IMFDCGMHM ND R++PDFS ISK+ F I
Sbjct: 1 MTIKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVI 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
DC++ITHFHLDH GALPFFTE+CGY+GPIYMT PT+A+ PI+LEDYRK+ V+++GE F
Sbjct: 61 DCVIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T+ I +CMKKVI V+L QT++VD++L I+AYYAGHVLGAAMFYAKVGD ++VYTGDYNM
Sbjct: 121 TAQMIKDCMKKVIPVNLHQTIKVDEELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
TPDRHLG+A ID+++ D+LITE
Sbjct: 181 TPDRHLGSAWIDQVKPDVLITE 202
>MGI|MGI:1919207 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 MGI:MGI:1919207 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB CTD:54973 EMBL:AK010425
EMBL:AK090206 EMBL:AK150436 EMBL:AK152740 EMBL:AK167607
EMBL:AK172533 EMBL:BC008240 EMBL:BC011155 IPI:IPI00467084
RefSeq:NP_082296.1 UniGene:Mm.259270 UniGene:Mm.475640
ProteinModelPortal:Q9CWS4 SMR:Q9CWS4 STRING:Q9CWS4
PhosphoSite:Q9CWS4 PaxDb:Q9CWS4 PRIDE:Q9CWS4
Ensembl:ENSMUST00000030901 GeneID:71957 KEGG:mmu:71957
InParanoid:Q9CWS4 NextBio:335052 Bgee:Q9CWS4 Genevestigator:Q9CWS4
GermOnline:ENSMUSG00000029034 Uniprot:Q9CWS4
Length = 600
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 128/195 (65%), Positives = 165/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I+GK +M DCGMHM YND R++PDFS I++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>RGD|1306841 [details] [associations]
symbol:Cpsf3l "cleavage and polyadenylation specific factor
3-like" species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 RGD:1306841 GO:GO:0005634 GO:GO:0005737
GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 HOGENOM:HOG000231294 KO:K13148
OMA:MAVEYMS GeneTree:ENSGT00700000104485 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:BC105303 IPI:IPI00365477
RefSeq:NP_001029064.1 UniGene:Rn.98615 ProteinModelPortal:Q3MHC2
STRING:Q3MHC2 Ensembl:ENSRNOT00000026725 GeneID:298688
KEGG:rno:298688 InParanoid:Q3MHC2 NextBio:644186
Genevestigator:Q3MHC2 GermOnline:ENSRNOG00000019712 Uniprot:Q3MHC2
Length = 600
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 128/195 (65%), Positives = 165/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I+GK +M DCGMHM YND R++PDFS I++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>UNIPROTKB|F1NV30 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
IPI:IPI00571913 EMBL:AADN02040858 Ensembl:ENSGALT00000002586
Uniprot:F1NV30
Length = 600
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 128/195 (65%), Positives = 165/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM YND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD++L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLITE
Sbjct: 189 AAWIDKCRPDLLITE 203
>UNIPROTKB|Q5ZIH0 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9031
"Gallus gallus" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 GO:GO:0032039 GO:GO:0016180
HOVERGEN:HBG080215 OrthoDB:EOG4GXFMB EMBL:AJ720814 IPI:IPI00571913
RefSeq:NP_001012854.1 UniGene:Gga.13403 ProteinModelPortal:Q5ZIH0
STRING:Q5ZIH0 GeneID:419418 KEGG:gga:419418 CTD:54973
InParanoid:Q5ZIH0 NextBio:20822477 Uniprot:Q5ZIH0
Length = 600
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 128/195 (65%), Positives = 165/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM YND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD++L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLITE
Sbjct: 189 AAWIDKCRPDLLITE 203
>UNIPROTKB|E2QY53 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:AAEX03003844 RefSeq:XP_003639102.1 Ensembl:ENSCAFT00000030626
GeneID:100855777 KEGG:cfa:100855777 Uniprot:E2QY53
Length = 600
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>UNIPROTKB|E9PNS4 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00984775
ProteinModelPortal:E9PNS4 SMR:E9PNS4 Ensembl:ENST00000528879
ArrayExpress:E9PNS4 Bgee:E9PNS4 Uniprot:E9PNS4
Length = 278
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>UNIPROTKB|Q5TA45 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
EMBL:AL139287 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K13148 HOVERGEN:HBG080215
OrthoDB:EOG4GXFMB CTD:54973 EMBL:AL136813 EMBL:AK000549
EMBL:AK021939 EMBL:AK023356 EMBL:AK297350 EMBL:CR533557
EMBL:BC000675 EMBL:BC007978 EMBL:BC013904 EMBL:BK005728
EMBL:BK005673 IPI:IPI00063404 IPI:IPI00306882 IPI:IPI00514973
RefSeq:NP_001243392.1 RefSeq:NP_060341.2 UniGene:Hs.6449
ProteinModelPortal:Q5TA45 SMR:Q5TA45 IntAct:Q5TA45
MINT:MINT-1482228 STRING:Q5TA45 PhosphoSite:Q5TA45 DMDM:118572557
PaxDb:Q5TA45 PRIDE:Q5TA45 DNASU:54973 Ensembl:ENST00000419704
Ensembl:ENST00000435064 Ensembl:ENST00000450926
Ensembl:ENST00000545578 GeneID:54973 KEGG:hsa:54973 UCSC:uc001aee.1
UCSC:uc001aeh.1 UCSC:uc009vjz.1 GeneCards:GC01M001236
HGNC:HGNC:26052 HPA:HPA028379 HPA:HPA029025 MIM:611354
neXtProt:NX_Q5TA45 PharmGKB:PA142672080 InParanoid:Q5TA45
PhylomeDB:Q5TA45 ChiTaRS:CPSF3L GenomeRNAi:54973 NextBio:58222
ArrayExpress:Q5TA45 Bgee:Q5TA45 Genevestigator:Q5TA45
GermOnline:ENSG00000127054 Uniprot:Q5TA45
Length = 600
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>UNIPROTKB|E9PI75 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI01011963
ProteinModelPortal:E9PI75 SMR:E9PI75 Ensembl:ENST00000527719
ArrayExpress:E9PI75 Bgee:E9PI75 Uniprot:E9PI75
Length = 209
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 125/194 (64%), Positives = 163/194 (84%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +C
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
MKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGA
Sbjct: 136 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 195
Query: 189 ARIDRLQLDLLITE 202
A ID+ + +LLITE
Sbjct: 196 AWIDKCRPNLLITE 209
>UNIPROTKB|G3V1S5 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 EMBL:AL139287 EMBL:CH471183 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K13148 OMA:MAVEYMS
CTD:54973 UniGene:Hs.6449 GeneID:54973 KEGG:hsa:54973
HGNC:HGNC:26052 ChiTaRS:CPSF3L GenomeRNAi:54973
RefSeq:NP_001243385.1 ProteinModelPortal:G3V1S5 SMR:G3V1S5
Ensembl:ENST00000540437 ArrayExpress:G3V1S5 Bgee:G3V1S5
Uniprot:G3V1S5
Length = 606
Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
Identities = 125/194 (64%), Positives = 163/194 (84%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +C
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
MKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGA
Sbjct: 136 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 195
Query: 189 ARIDRLQLDLLITE 202
A ID+ + +LLITE
Sbjct: 196 AWIDKCRPNLLITE 209
>UNIPROTKB|E9PIG1 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00981641
ProteinModelPortal:E9PIG1 SMR:E9PIG1 Ensembl:ENST00000530031
ArrayExpress:E9PIG1 Bgee:E9PIG1 Uniprot:E9PIG1
Length = 249
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 124/193 (64%), Positives = 162/193 (83%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+HF
Sbjct: 57 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 116
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +C
Sbjct: 117 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 176
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
MKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGA
Sbjct: 177 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 236
Query: 189 ARIDRLQLDLLIT 201
A ID+ + +LLIT
Sbjct: 237 AWIDKCRPNLLIT 249
>UNIPROTKB|F1RJE8 [details] [associations]
symbol:CPSF3L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:FP102596 RefSeq:XP_003127541.3 Ensembl:ENSSSCT00000003708
GeneID:100523908 KEGG:ssc:100523908 Uniprot:F1RJE8
Length = 599
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 124/195 (63%), Positives = 161/195 (82%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM ++D R++PDFS I++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIGGKNVMLDCGMHMGFSDDRRFPDFSYITRHGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKK +AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKAVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>UNIPROTKB|Q2YDM2 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0005634 GO:GO:0005737 GO:GO:0016787
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000231294 EMBL:BC110155 IPI:IPI00725178
UniGene:Bt.4894 ProteinModelPortal:Q2YDM2 STRING:Q2YDM2
PRIDE:Q2YDM2 HOVERGEN:HBG080215 InParanoid:Q2YDM2 OrthoDB:EOG4GXFMB
Uniprot:Q2YDM2
Length = 599
Score = 704 (252.9 bits), Expect = 1.8e-69, P = 1.8e-69
Identities = 125/195 (64%), Positives = 161/195 (82%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM ++D R++PDFS ++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + LLITE
Sbjct: 189 AAWIDKCRPSLLITE 203
>UNIPROTKB|E1B7Q9 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9913
"Bos taurus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS GeneTree:ENSGT00700000104485
EMBL:DAAA02043243 IPI:IPI00971575 Ensembl:ENSBTAT00000010020
Uniprot:E1B7Q9
Length = 598
Score = 700 (251.5 bits), Expect = 4.9e-69, P = 4.9e-69
Identities = 126/195 (64%), Positives = 161/195 (82%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM ++D R++PDFS I++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT PT+A+ PI+LEDYRK+ VD+ GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDK-GEANFFTSQMIKD 127
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 128 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 187
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + LLITE
Sbjct: 188 AAWIDKCRPSLLITE 202
>FB|FBgn0039691 [details] [associations]
symbol:IntS11 "Integrator 11" species:7227 "Drosophila
melanogaster" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006378 "mRNA polyadenylation" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0034472 "snRNA
3'-end processing" evidence=IDA] [GO:0016180 "snRNA processing"
evidence=ISS] [GO:0032039 "integrator complex" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001279
SMART:SM00849 Pfam:PF07521 EMBL:AE014297 GO:GO:0022008
GO:GO:0006378 GO:GO:0016787 GO:GO:0005847 GO:GO:0006379
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K13148 OMA:MAVEYMS GeneTree:ENSGT00700000104485
GO:GO:0034472 EMBL:AY061097 RefSeq:NP_651721.1 UniGene:Dm.3722
SMR:Q9VAH9 STRING:Q9VAH9 EnsemblMetazoa:FBtr0085476 GeneID:43506
KEGG:dme:Dmel_CG1972 UCSC:CG1972-RA CTD:43506 FlyBase:FBgn0039691
InParanoid:Q9VAH9 OrthoDB:EOG47D7X3 GenomeRNAi:43506 NextBio:834295
Uniprot:Q9VAH9
Length = 597
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 125/195 (64%), Positives = 158/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++++ GK IM DCGMHM YND R++PDFS I + IDC++I+H
Sbjct: 9 LGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ +EI GY GPIYMT+PT+A+API+LED RKV V+R+GE FT+ I +
Sbjct: 69 FHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVI V L Q++ VD DL+I+AYYAGHVLGAAMF+ KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLI+E
Sbjct: 189 AAWIDKCRPDLLISE 203
>WB|WBGene00008642 [details] [associations]
symbol:F10B5.8 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0009792 EMBL:Z48334 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000231294 KO:K13148 OMA:MAVEYMS
GeneTree:ENSGT00700000104485 PIR:T20694 RefSeq:NP_495706.2
ProteinModelPortal:Q9U3K2 SMR:Q9U3K2 STRING:Q9U3K2 PaxDb:Q9U3K2
EnsemblMetazoa:F10B5.8 GeneID:174310 KEGG:cel:CELE_F10B5.8
UCSC:F10B5.8 CTD:174310 WormBase:F10B5.8 InParanoid:Q9U3K2
NextBio:883468 Uniprot:Q9U3K2
Length = 608
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 117/201 (58%), Positives = 153/201 (76%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I + LGAGQ+VG+SC+++TI GK IM DCGMHM Y D R++PDFS I + +DC
Sbjct: 8 IKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 67
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH G+LP +EI GY+GPIYMTYPT+A+ P++LEDYRKV D +GE FTS
Sbjct: 68 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGETNFFTS 127
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
D I CMKKV+ L + + VD +L IRA+YAGHVLGAAMF ++GD +++YTGDYNMTP
Sbjct: 128 DDIKNCMKKVVGCALHEIIHVDNELSIRAFYAGHVLGAAMFEIRLGDHSVLYTGDYNMTP 187
Query: 183 DRHLGAARI-DRLQLDLLITE 202
DRHLGAAR+ ++ +LI+E
Sbjct: 188 DRHLGAARVLPGVRPTVLISE 208
>ZFIN|ZDB-GENE-050522-13 [details] [associations]
symbol:cpsf3l "cleavage and polyadenylation specific
factor 3-like" species:7955 "Danio rerio" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
ZFIN:ZDB-GENE-050522-13 GO:GO:0016787 GO:GO:0043484
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:MAVEYMS GeneTree:ENSGT00700000104485 EMBL:CABZ01054885
EMBL:CR846089 IPI:IPI00865509 Ensembl:ENSDART00000102902
Uniprot:E7EXW1
Length = 601
Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
Identities = 110/198 (55%), Positives = 152/198 (76%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK IM DCGMHM +ND R++PDFS I+++ +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ +E+ GY+GPIYMT+PT+A+ PI+LED+RK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAK---VGDSAMVYTGDYNMTPDR 184
CMKKV+ ++L QTVQVD +L+I+AYYAGHVLGAAM ++ V ++ YT MTP
Sbjct: 129 CMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQSRFRVVYTVSVSYTYSNLMTPAS 188
Query: 185 HLGAARIDRLQLDLLITE 202
L AA ID+ + D+LI+E
Sbjct: 189 DLRAAWIDKCRPDILISE 206
>UNIPROTKB|C9J979 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
EMBL:AL139287 InterPro:IPR022712 Pfam:PF10996 HOGENOM:HOG000231294
HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00514808
ProteinModelPortal:C9J979 SMR:C9J979 STRING:C9J979
Ensembl:ENST00000434694 ArrayExpress:C9J979 Bgee:C9J979
Uniprot:C9J979
Length = 344
Score = 489 (177.2 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 83/136 (61%), Positives = 113/136 (83%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQV 143
CMKKV+AV L QTVQV
Sbjct: 129 CMKKVVAVHLHQTVQV 144
Score = 43 (20.2 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 187 GAARIDRLQLDLLITE 202
GAA ID+ + +LLITE
Sbjct: 218 GAAWIDKCRPNLLITE 233
>GENEDB_PFALCIPARUM|PFC0825c [details] [associations]
symbol:PFC0825c "cleavage and polyadenylation
specificity factor protein, putative" species:5833 "Plasmodium
falciparum" [GO:0006379 "mRNA cleavage" evidence=ISS] [GO:0006378
"mRNA polyadenylation" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] InterPro:IPR001279
SMART:SM00849 Pfam:PF07521 GO:GO:0003729 GO:GO:0016787
EMBL:AL844502 GO:GO:0005847 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K13148 PIR:T18488
RefSeq:XP_001351256.1 ProteinModelPortal:O77371 PRIDE:O77371
EnsemblProtists:PFC0825c:mRNA GeneID:814500 KEGG:pfa:PFC0825c
EuPathDB:PlasmoDB:PF3D7_0318600 HOGENOM:HOG000283200
ProtClustDB:CLSZ2433497 Uniprot:O77371
Length = 1017
Score = 197 (74.4 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 37/64 (57%), Positives = 48/64 (75%)
Query: 57 NNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGE 116
N IDC++I+HFH+DHIGALPFFTEI Y G I M+YPT+AL+PI+L D +V D + E
Sbjct: 167 NEIIDCVIISHFHMDHIGALPFFTEILKYRGIILMSYPTKALSPILLLDSCRV-TDMKWE 225
Query: 117 VEQF 120
+ F
Sbjct: 226 KKNF 229
Score = 191 (72.3 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 35/80 (43%), Positives = 55/80 (68%)
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
D+I C+ KVI + + +T ++ D+ I YYAGHVLGA ++ +V + +++YTGDYN P
Sbjct: 261 DNIYNCIDKVIGLQINETFELG-DMSITPYYAGHVLGACIYKIEVRNFSVIYTGDYNTIP 319
Query: 183 DRHLGAARIDRLQLDLLITE 202
D+HLG+A I L ++ I+E
Sbjct: 320 DKHLGSANIPSLNPEIFISE 339
Score = 157 (60.3 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 25/49 (51%), Positives = 37/49 (75%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCD 55
VLGAGQ VG+SCV+V + +++MFDCG H+ Y D R+YP+F+ + + D
Sbjct: 13 VLGAGQTVGRSCVIVELENRKVMFDCGCHLGYKDERKYPNFNLLIRGPD 61
>UNIPROTKB|O77371 [details] [associations]
symbol:PFC0825c "Cleavage and polyadenylation specificity
factor protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005847 "mRNA cleavage
and polyadenylation specificity factor complex" evidence=ISS]
InterPro:IPR001279 SMART:SM00849 Pfam:PF07521 GO:GO:0003729
GO:GO:0016787 EMBL:AL844502 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K13148 PIR:T18488
RefSeq:XP_001351256.1 ProteinModelPortal:O77371 PRIDE:O77371
EnsemblProtists:PFC0825c:mRNA GeneID:814500 KEGG:pfa:PFC0825c
EuPathDB:PlasmoDB:PF3D7_0318600 HOGENOM:HOG000283200
ProtClustDB:CLSZ2433497 Uniprot:O77371
Length = 1017
Score = 197 (74.4 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 37/64 (57%), Positives = 48/64 (75%)
Query: 57 NNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGE 116
N IDC++I+HFH+DHIGALPFFTEI Y G I M+YPT+AL+PI+L D +V D + E
Sbjct: 167 NEIIDCVIISHFHMDHIGALPFFTEILKYRGIILMSYPTKALSPILLLDSCRV-TDMKWE 225
Query: 117 VEQF 120
+ F
Sbjct: 226 KKNF 229
Score = 191 (72.3 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 35/80 (43%), Positives = 55/80 (68%)
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
D+I C+ KVI + + +T ++ D+ I YYAGHVLGA ++ +V + +++YTGDYN P
Sbjct: 261 DNIYNCIDKVIGLQINETFELG-DMSITPYYAGHVLGACIYKIEVRNFSVIYTGDYNTIP 319
Query: 183 DRHLGAARIDRLQLDLLITE 202
D+HLG+A I L ++ I+E
Sbjct: 320 DKHLGSANIPSLNPEIFISE 339
Score = 157 (60.3 bits), Expect = 1.3e-45, Sum P(3) = 1.3e-45
Identities = 25/49 (51%), Positives = 37/49 (75%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCD 55
VLGAGQ VG+SCV+V + +++MFDCG H+ Y D R+YP+F+ + + D
Sbjct: 13 VLGAGQTVGRSCVIVELENRKVMFDCGCHLGYKDERKYPNFNLLIRGPD 61
>UNIPROTKB|E9PIL7 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 GO:GO:0016787 EMBL:AL139287
HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00977321
ProteinModelPortal:E9PIL7 SMR:E9PIL7 Ensembl:ENST00000534345
ArrayExpress:E9PIL7 Bgee:E9PIL7 Uniprot:E9PIL7
Length = 140
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 77/131 (58%), Positives = 109/131 (83%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
++GAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+
Sbjct: 9 LVGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIIS 68
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
HFHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I
Sbjct: 69 HFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIK 128
Query: 127 ECMKKVIAVDL 137
+CMKKV+AV L
Sbjct: 129 DCMKKVVAVHL 139
>TAIR|locus:2206076 [details] [associations]
symbol:CPSF73-I "cleavage and polyadenylation specificity
factor 73-I" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0009855
"determination of bilateral symmetry" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010073 "meristem
maintenance" evidence=RCA] [GO:0016246 "RNA interference"
evidence=RCA] [GO:0031507 "heterochromatin assembly" evidence=RCA]
[GO:0045787 "positive regulation of cell cycle" evidence=RCA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006397
GO:GO:0090305 EMBL:AC018908 GO:GO:0004518 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
EMBL:AY140900 EMBL:AY150478 EMBL:AY074280 EMBL:AK316692
EMBL:AK316794 IPI:IPI00533462 PIR:G96635 RefSeq:NP_001031215.1
RefSeq:NP_176297.1 RefSeq:NP_849835.1 UniGene:At.23510
ProteinModelPortal:Q9C952 SMR:Q9C952 IntAct:Q9C952 STRING:Q9C952
PaxDb:Q9C952 PRIDE:Q9C952 EnsemblPlants:AT1G61010.1
EnsemblPlants:AT1G61010.2 EnsemblPlants:AT1G61010.3 GeneID:842393
KEGG:ath:AT1G61010 TAIR:At1g61010 HOGENOM:HOG000203394
InParanoid:Q9C952 KO:K14403 OMA:YVSFSAH PhylomeDB:Q9C952
ProtClustDB:CLSN2681829 Genevestigator:Q9C952 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 Uniprot:Q9C952
Length = 693
Score = 400 (145.9 bits), Expect = 1.4e-36, P = 1.4e-36
Identities = 84/197 (42%), Positives = 119/197 (60%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK I+FDCG+H AY+ P F I S +ID ++ITH
Sbjct: 27 LGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPS-----SIDVLLITH 81
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FH+DH +LP+F E +NG ++MT+ T+A+ ++L DY KV + VE F I
Sbjct: 82 FHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKV---SKVSVEDMLFDEQDI 138
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
+ M K+ +D QTV+V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 139 NKSMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRH 197
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+ I E
Sbjct: 198 LRAAELPQFSPDICIIE 214
>UNIPROTKB|E9PQF0 [details] [associations]
symbol:CPSF3L "Integrator complex subunit 11" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 GO:GO:0016787 EMBL:AL139287
HGNC:HGNC:26052 ChiTaRS:CPSF3L IPI:IPI00982774
ProteinModelPortal:E9PQF0 SMR:E9PQF0 Ensembl:ENST00000498476
ArrayExpress:E9PQF0 Bgee:E9PQF0 Uniprot:E9PQF0
Length = 167
Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
Identities = 59/98 (60%), Positives = 84/98 (85%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+HF
Sbjct: 70 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 129
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDY 106
HLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDY
Sbjct: 130 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDY 167
>DICTYBASE|DDB_G0274799 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specificity factor 73 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IC] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0274799 Pfam:PF07521 GO:GO:0046872 GO:GO:0006378
GenomeReviews:CM000151_GR EMBL:AAFI02000012 GO:GO:0003730
GO:GO:0004519 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
RefSeq:XP_643926.1 ProteinModelPortal:Q86A79 SMR:Q86A79
STRING:Q86A79 EnsemblProtists:DDB0233696 GeneID:8619353
KEGG:ddi:DDB_G0274799 ProtClustDB:CLSZ2431003 Uniprot:Q86A79
Length = 774
Score = 367 (134.2 bits), Expect = 7.9e-33, P = 7.9e-33
Identities = 73/195 (37%), Positives = 118/195 (60%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
+G+G EVG+SCV++ GK++MFDCG+H AY+ P F I D + ID ++++H
Sbjct: 41 IGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSIES--DIPD-IDLLLVSH 97
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH A+P+F + G ++MT+PT+A+ ++L DY KV R + F +
Sbjct: 98 FHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSNITRDDDMLFDKSDLDR 157
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
++K+ V +Q V+ +++ + AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 158 SLEKIEKVRYRQKVE-HNGIKVTCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLM 216
Query: 188 AARIDRLQLDLLITE 202
A +++D+LI E
Sbjct: 217 GAETPPVKVDVLIIE 231
>ZFIN|ZDB-GENE-030131-3275 [details] [associations]
symbol:cpsf3 "cleavage and polyadenylation
specific factor 3" species:7955 "Danio rerio" [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 ZFIN:ZDB-GENE-030131-3275 GO:GO:0016787
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098 CTD:51692
HOVERGEN:HBG051107 EMBL:AY648793 IPI:IPI00509063
RefSeq:NP_001003836.1 UniGene:Dr.77231 ProteinModelPortal:Q6DRG6
SMR:Q6DRG6 STRING:Q6DRG6 GeneID:324554 KEGG:dre:324554
NextBio:20808833 ArrayExpress:Q6DRG6 Uniprot:Q6DRG6
Length = 690
Score = 359 (131.4 bits), Expect = 4.1e-32, P = 4.1e-32
Identities = 75/195 (38%), Positives = 115/195 (58%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIILEFKGRKIMVDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV ++ +T + E
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDM-LYTETDLEE 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 138 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LITE
Sbjct: 197 AAEIPSVKPDILITE 211
>RGD|1305767 [details] [associations]
symbol:Cpsf3 "cleavage and polyadenylation specific factor 3,
73kDa" species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0004521 "endoribonuclease activity" evidence=ISO]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISO] [GO:0006398 "histone mRNA 3'-end processing"
evidence=ISO] [GO:0008409 "5'-3' exonuclease activity"
evidence=ISO] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 RGD:1305767 GO:GO:0016787 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 CTD:51692 HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6
UniGene:Rn.100522 EMBL:BC099817 IPI:IPI00365532
RefSeq:NP_001025201.1 ProteinModelPortal:Q499P4 SMR:Q499P4
STRING:Q499P4 GeneID:298916 KEGG:rno:298916 InParanoid:Q499P4
NextBio:644507 Genevestigator:Q499P4 Uniprot:Q499P4
Length = 685
Score = 357 (130.7 bits), Expect = 6.6e-32, P = 6.6e-32
Identities = 74/195 (37%), Positives = 114/195 (58%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV ++ +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDM-LYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGMKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>UNIPROTKB|P79101 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation specificity
factor subunit 3" species:9913 "Bos taurus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006398 "histone mRNA 3'-end processing"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0008409 "5'-3'
exonuclease activity" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0046872 GO:GO:0003723 GO:GO:0030529 GO:GO:0004521
GO:GO:0005847 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 GO:GO:0006398 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
EMBL:X95906 EMBL:BC104553 IPI:IPI00708839 RefSeq:NP_776709.1
UniGene:Bt.5045 ProteinModelPortal:P79101 SMR:P79101 STRING:P79101
PRIDE:P79101 Ensembl:ENSBTAT00000026303 GeneID:281712
KEGG:bta:281712 CTD:51692 GeneTree:ENSGT00700000104485
HOVERGEN:HBG051107 InParanoid:P79101 OrthoDB:EOG4FN4H6
NextBio:20805634 ArrayExpress:P79101 GO:GO:0008409 Uniprot:P79101
Length = 684
Score = 356 (130.4 bits), Expect = 8.4e-32, P = 8.4e-32
Identities = 74/195 (37%), Positives = 114/195 (58%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV ++ +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDM-LYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>UNIPROTKB|Q9UKF6 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008409 "5'-3' exonuclease activity" evidence=ISS] [GO:0004521
"endoribonuclease activity" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
EMBL:AF017269 Pfam:PF07521 EMBL:AF171877 EMBL:CH471053
GO:GO:0046872 Reactome:REACT_1675 GO:GO:0006378 GO:GO:0003723
GO:GO:0030529 GO:GO:0006406 GO:GO:0004521 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0005847 GO:GO:0006379 GO:GO:0006369
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 Reactome:REACT_78 GO:GO:0006398 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
CTD:51692 HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6 GO:GO:0008409
EMBL:AC080162 EMBL:BC011654 EMBL:BC020211 IPI:IPI00007818
RefSeq:NP_057291.1 UniGene:Hs.515972 PDB:2I7T PDB:2I7V PDBsum:2I7T
PDBsum:2I7V ProteinModelPortal:Q9UKF6 SMR:Q9UKF6 DIP:DIP-42501N
MINT:MINT-1742891 STRING:Q9UKF6 PhosphoSite:Q9UKF6 DMDM:18203503
PaxDb:Q9UKF6 PeptideAtlas:Q9UKF6 PRIDE:Q9UKF6 DNASU:51692
Ensembl:ENST00000238112 GeneID:51692 KEGG:hsa:51692 UCSC:uc002qzo.1
GeneCards:GC02P009514 HGNC:HGNC:2326 HPA:HPA034657 MIM:606029
neXtProt:NX_Q9UKF6 PharmGKB:PA26843 InParanoid:Q9UKF6
PhylomeDB:Q9UKF6 ChiTaRS:CPSF3 EvolutionaryTrace:Q9UKF6
GenomeRNAi:51692 NextBio:55702 ArrayExpress:Q9UKF6 Bgee:Q9UKF6
CleanEx:HS_CPSF3 Genevestigator:Q9UKF6 GermOnline:ENSG00000119203
Uniprot:Q9UKF6
Length = 684
Score = 356 (130.4 bits), Expect = 8.4e-32, P = 8.4e-32
Identities = 74/195 (37%), Positives = 114/195 (58%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV ++ +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDM-LYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>MGI|MGI:1859328 [details] [associations]
symbol:Cpsf3 "cleavage and polyadenylation specificity
factor 3" species:10090 "Mus musculus" [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISO;IDA] [GO:0006378 "mRNA polyadenylation" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISO;IDA] [GO:0008409 "5'-3'
exonuclease activity" evidence=IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
MGI:MGI:1859328 GO:GO:0046872 GO:GO:0003723 GO:GO:0030529
GO:GO:0004521 GO:GO:0005847 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 GO:GO:0006398
HOGENOM:HOG000203394 KO:K14403 OMA:YVSFSAH InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 CTD:51692 GeneTree:ENSGT00700000104485
HOVERGEN:HBG051107 OrthoDB:EOG4FN4H6 GO:GO:0008409 ChiTaRS:CPSF3
EMBL:AF203969 EMBL:BC023297 IPI:IPI00135099 RefSeq:NP_061283.2
UniGene:Mm.356778 ProteinModelPortal:Q9QXK7 SMR:Q9QXK7
STRING:Q9QXK7 PhosphoSite:Q9QXK7 PaxDb:Q9QXK7 PRIDE:Q9QXK7
Ensembl:ENSMUST00000067284 GeneID:54451 KEGG:mmu:54451
InParanoid:Q8CIM0 NextBio:311332 Bgee:Q9QXK7 CleanEx:MM_CPSF3
Genevestigator:Q9QXK7 GermOnline:ENSMUSG00000054309 Uniprot:Q9QXK7
Length = 684
Score = 356 (130.4 bits), Expect = 8.4e-32, P = 8.4e-32
Identities = 74/195 (37%), Positives = 114/195 (58%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV ++ +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDM-LYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>UNIPROTKB|F1NKW5 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0003723 GO:GO:0004521 GO:GO:0005847
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0008409 EMBL:AADN02018718
IPI:IPI00600642 Ensembl:ENSGALT00000026493 Uniprot:F1NKW5
Length = 685
Score = 356 (130.4 bits), Expect = 8.4e-32, P = 8.4e-32
Identities = 74/195 (37%), Positives = 114/195 (58%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV ++ +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDM-LYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>UNIPROTKB|G3V6W7 [details] [associations]
symbol:Cpsf3 "Protein Cpsf3" species:10116 "Rattus
norvegicus" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
RGD:1305767 GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 EMBL:CH473947 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 UniGene:Rn.100522
Ensembl:ENSRNOT00000009652 Uniprot:G3V6W7
Length = 685
Score = 356 (130.4 bits), Expect = 8.4e-32, P = 8.4e-32
Identities = 74/195 (37%), Positives = 114/195 (58%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV ++ +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDM-LYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>UNIPROTKB|E2R7R2 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 GeneTree:ENSGT00700000104485 EMBL:AAEX03010701
RefSeq:XP_003639652.1 Ensembl:ENSCAFT00000005417 GeneID:100856414
KEGG:cfa:100856414 Uniprot:E2R7R2
Length = 717
Score = 356 (130.4 bits), Expect = 9.8e-32, P = 9.8e-32
Identities = 74/195 (37%), Positives = 114/195 (58%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 50 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 104
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV ++ +T + E
Sbjct: 105 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADDM-LYTETDLEE 163
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 164 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 222
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 223 AAEIPNIKPDILIIE 237
>POMBASE|SPAC17G6.16c [details] [associations]
symbol:ysh1 "mRNA cleavage and polyadenylation
specificity factor complex endoribonuclease subunit Ysh1"
species:4896 "Schizosaccharomyces pombe" [GO:0004521
"endoribonuclease activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IC]
[GO:0006379 "mRNA cleavage" evidence=IC] [GO:0046872 "metal ion
binding" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 PomBase:SPAC17G6.16c Pfam:PF07521 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0006378
GO:GO:0004521 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
OrthoDB:EOG41ZJK7 PIR:T37848 RefSeq:NP_594263.2 STRING:O13794
EnsemblFungi:SPAC17G6.16c.1 GeneID:2542258 NextBio:20803322
Uniprot:O13794
Length = 757
Score = 356 (130.4 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 72/201 (35%), Positives = 116/201 (57%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LGAG EVG+SC V+ GK +M D G+H AY P F S +D
Sbjct: 19 LEFINLGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFDLS-----TVDV 73
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-FT 121
++I+HFHLDH+ +LP+ + + G ++MT+PT+A+ +L DY KV G +Q +
Sbjct: 74 LLISHFHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKV--SNVGMEDQLYD 131
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+ ++ AVD T++V+ ++ Y+AGHVLGA M++ ++ +++TGDY+
Sbjct: 132 EKDLLAAFDRIEAVDYHSTIEVE-GIKFTPYHAGHVLGACMYFVEMAGVNILFTGDYSRE 190
Query: 182 PDRHLGAARIDRLQLDLLITE 202
DRHL A + + D+LITE
Sbjct: 191 EDRHLHVAEVPPKRPDVLITE 211
>UNIPROTKB|I3LKR1 [details] [associations]
symbol:CPSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008409 "5'-3' exonuclease activity" evidence=IEA]
[GO:0006398 "histone mRNA 3'-end processing" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0003723 GO:GO:0004521 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0008409 EMBL:FP312696
Ensembl:ENSSSCT00000027309 Uniprot:I3LKR1
Length = 687
Score = 354 (129.7 bits), Expect = 1.4e-31, P = 1.4e-31
Identities = 74/197 (37%), Positives = 113/197 (57%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + +T +
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVRKCSNISADDMLYTETDL 131
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
E M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRH
Sbjct: 132 EESMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRH 190
Query: 186 LGAARIDRLQLDLLITE 202
L AA I ++ D+LI E
Sbjct: 191 LMAAEIPNIKPDILIIE 207
>FB|FBgn0261065 [details] [associations]
symbol:Cpsf73 "Cleavage and polyadenylation specificity
factor 73" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS;NAS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006398 "histone mRNA 3'-end
processing" evidence=IMP] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 EMBL:AE014297 GO:GO:0022008
GO:GO:0003677 GO:GO:0006378 GO:GO:0016787 GO:GO:0005847
GO:GO:0006379 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 GO:GO:0006398 KO:K14403 OMA:YVSFSAH
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 EMBL:AY119128 RefSeq:NP_650738.1
UniGene:Dm.13714 SMR:Q9VE51 IntAct:Q9VE51 MINT:MINT-804945
STRING:Q9VE51 EnsemblMetazoa:FBtr0083690 GeneID:42240
KEGG:dme:Dmel_CG7698 UCSC:CG7698-RA CTD:42240 FlyBase:FBgn0261065
InParanoid:Q9VE51 OrthoDB:EOG4P5HR4 GenomeRNAi:42240 NextBio:827838
Uniprot:Q9VE51
Length = 684
Score = 347 (127.2 bits), Expect = 8.0e-31, P = 8.0e-31
Identities = 76/195 (38%), Positives = 113/195 (57%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + ID + I+H
Sbjct: 23 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEA-----DEIDLLFISH 77
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + G +MT+ T+A+ ML DY K+ + E +T +
Sbjct: 78 FHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKIS-NISTEQMLYTEADLEA 136
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 137 SMEKIETINFHEERDV-MGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLM 195
Query: 188 AARIDRLQLDLLITE 202
AA + ++ D+LITE
Sbjct: 196 AAEVPPMKPDVLITE 210
>WB|WBGene00013460 [details] [associations]
symbol:cpsf-3 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 HOGENOM:HOG000203394
KO:K14403 OMA:YVSFSAH InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 EMBL:AL132951 RefSeq:NP_502553.2
ProteinModelPortal:Q95PY8 SMR:Q95PY8 STRING:Q95PY8 PaxDb:Q95PY8
EnsemblMetazoa:Y67H2A.1.1 EnsemblMetazoa:Y67H2A.1.2 GeneID:178285
KEGG:cel:CELE_Y67H2A.1 UCSC:Y67H2A.1 CTD:178285 WormBase:Y67H2A.1
InParanoid:Q95PY8 NextBio:900506 Uniprot:Q95PY8
Length = 707
Score = 346 (126.9 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 75/200 (37%), Positives = 117/200 (58%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYN--DHRQYPDFSRISKSCDFNNAIDCIVI 65
LG+GQEVG+SC ++ GKR+M DCG+H + D + DF I ID ++I
Sbjct: 16 LGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIEN-------IDLLLI 68
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ---FTS 122
THFHLDH GALP+ + + G +MT+ T+A+ ++L DY V + + G ++ +T
Sbjct: 69 THFHLDHCGALPWLLQKTAFQGKCFMTHATKAIYRMLLGDY--VRISKYGGPDRNQLYTE 126
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
D + + M K+ +D ++ +V+ ++ Y AGHVLGA F ++ ++YTGD++
Sbjct: 127 DDLEKSMAKIETIDFREQKEVN-GIRFWPYVAGHVLGACQFMIEIAGVRVLYTGDFSCLE 185
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL AA I + +LITE
Sbjct: 186 DRHLCAAEIPPITPQVLITE 205
>CGD|CAL0005344 [details] [associations]
symbol:orf19.5486 species:5476 "Candida albicans" [GO:0042493
"response to drug" evidence=IMP] [GO:0004521 "endoribonuclease
activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0034247 "snoRNA splicing"
evidence=IEA] [GO:0031126 "snoRNA 3'-end processing" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006369 "termination
of RNA polymerase II transcription" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 CGD:CAL0005344 Pfam:PF07521 GO:GO:0005634
GO:GO:0042493 GO:GO:0046872 GO:GO:0006397 GO:GO:0090305
GO:GO:0004519 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 EMBL:AACQ01000196 EMBL:AACQ01000195
RefSeq:XP_711478.1 RefSeq:XP_711502.1 ProteinModelPortal:Q59P50
STRING:Q59P50 GeneID:3646887 GeneID:3646911 KEGG:cal:CaO19.12941
KEGG:cal:CaO19.5486 Uniprot:Q59P50
Length = 870
Score = 333 (122.3 bits), Expect = 4.8e-29, P = 4.8e-29
Identities = 68/204 (33%), Positives = 118/204 (57%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM D GMH A + H +P F S +D ++I+H
Sbjct: 105 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFDEYDIS-----KVDILLISH 159
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV--LVDRRGE-------VE 118
FH+DH +LP+ + + G ++MT+ T+A+ +++D+ +V + + R E
Sbjct: 160 FHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSEDGGGGEGSN 219
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDY 178
+T D I + ++ +D T+++D ++ AY+AGHVLGA M++ ++G +++TGDY
Sbjct: 220 LYTDDDIMKSFDRIETIDYHSTMEID-GIRFTAYHAGHVLGACMYFIEIGGLKVLFTGDY 278
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
+ +RHL AA + L+ D+LI+E
Sbjct: 279 SREENRHLHAAEVPPLKPDILISE 302
>UNIPROTKB|Q59P50 [details] [associations]
symbol:YSH1 "Endoribonuclease YSH1" species:237561 "Candida
albicans SC5314" [GO:0042493 "response to drug" evidence=IMP]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 CGD:CAL0005344
Pfam:PF07521 GO:GO:0005634 GO:GO:0042493 GO:GO:0046872
GO:GO:0006397 GO:GO:0090305 GO:GO:0004519 eggNOG:COG1236
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K14403 InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
EMBL:AACQ01000196 EMBL:AACQ01000195 RefSeq:XP_711478.1
RefSeq:XP_711502.1 ProteinModelPortal:Q59P50 STRING:Q59P50
GeneID:3646887 GeneID:3646911 KEGG:cal:CaO19.12941
KEGG:cal:CaO19.5486 Uniprot:Q59P50
Length = 870
Score = 333 (122.3 bits), Expect = 4.8e-29, P = 4.8e-29
Identities = 68/204 (33%), Positives = 118/204 (57%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM D GMH A + H +P F S +D ++I+H
Sbjct: 105 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFDEYDIS-----KVDILLISH 159
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV--LVDRRGE-------VE 118
FH+DH +LP+ + + G ++MT+ T+A+ +++D+ +V + + R E
Sbjct: 160 FHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSEDGGGGEGSN 219
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDY 178
+T D I + ++ +D T+++D ++ AY+AGHVLGA M++ ++G +++TGDY
Sbjct: 220 LYTDDDIMKSFDRIETIDYHSTMEID-GIRFTAYHAGHVLGACMYFIEIGGLKVLFTGDY 278
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
+ +RHL AA + L+ D+LI+E
Sbjct: 279 SREENRHLHAAEVPPLKPDILISE 302
>SGD|S000004267 [details] [associations]
symbol:YSH1 "Putative endoribonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IMP] [GO:0006379 "mRNA
cleavage" evidence=IMP] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=IMP] [GO:0031126 "snoRNA 3'-end
processing" evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP]
[GO:0034247 "snoRNA splicing" evidence=IMP] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IDA;IPI] [GO:0005849 "mRNA cleavage factor complex"
evidence=IPI] [GO:0004521 "endoribonuclease activity"
evidence=ISS;IMP] [GO:0003723 "RNA binding" evidence=IC]
[GO:0004519 "endonuclease activity" evidence=IEA]
InterPro:IPR001279 Pfam:PF00753 SMART:SM00849 SGD:S000004267
Pfam:PF07521 GO:GO:0046872 GO:GO:0006378 EMBL:BK006945
GO:GO:0004521 GO:GO:0005847 GO:GO:0006379 GO:GO:0006369
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 EMBL:U17245 HOGENOM:HOG000203394 KO:K14403
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098
GeneTree:ENSGT00700000104485 GO:GO:0031126 GO:GO:0034247
OMA:EISFAAH OrthoDB:EOG41ZJK7 PIR:S51413 RefSeq:NP_013379.1
ProteinModelPortal:Q06224 SMR:Q06224 DIP:DIP-2470N IntAct:Q06224
MINT:MINT-375457 STRING:Q06224 PaxDb:Q06224 PeptideAtlas:Q06224
EnsemblFungi:YLR277C GeneID:850983 KEGG:sce:YLR277C CYGD:YLR277c
NextBio:967501 Genevestigator:Q06224 GermOnline:YLR277C
Uniprot:Q06224
Length = 779
Score = 326 (119.8 bits), Expect = 2.1e-28, P = 2.1e-28
Identities = 68/202 (33%), Positives = 112/202 (55%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ GK +M D G+H AY P + S +D ++I+H
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLS-----KVDILLISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLV-----DRRGEVEQ--F 120
FHLDH +LP+ + + G ++MT+PT+A+ +L D+ +V G ++ F
Sbjct: 69 FHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLF 128
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+ + + + K+ VD TV V+ ++ A++AGHVLGAAMF ++ +++TGDY+
Sbjct: 129 SDEDLVDSFDKIETVDYHSTVDVN-GIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSR 187
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL +A + L ++LI E
Sbjct: 188 EVDRHLNSAEVPPLSSNVLIVE 209
>ASPGD|ASPL0000060573 [details] [associations]
symbol:AN0990 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005634 EMBL:BN001308
GO:GO:0046872 GO:GO:0006397 GO:GO:0090305 GO:GO:0004519
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 EMBL:AACD01000015 RefSeq:XP_658594.1
ProteinModelPortal:Q5BEP0 STRING:Q5BEP0
EnsemblFungi:CADANIAT00001661 GeneID:2876766 KEGG:ani:AN0990.2
OMA:EISFAAH OrthoDB:EOG41ZJK7 Uniprot:Q5BEP0
Length = 884
Score = 307 (113.1 bits), Expect = 3.0e-26, P = 3.0e-26
Identities = 70/207 (33%), Positives = 112/207 (54%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
+A CL G G EVG+SC ++ GK +M D GMH A P F S +
Sbjct: 24 LAFYCL--GGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLS-----TV 76
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D ++I+HFH+DH ALP+ + G ++MT+ T+A+ +++D +V ++
Sbjct: 77 DILLISHFHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVNNTASSSDQRT 136
Query: 121 T----SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
T DH++ + + +D T ++ ++I Y AGHVLGAAMF + +++TG
Sbjct: 137 TLYTEHDHLST-LPLIETIDFNTTHTINS-IRITPYPAGHVLGAAMFLISIAGLNILFTG 194
Query: 177 DYNMTPDRHLGAARIDR-LQLDLLITE 202
DY+ DRHL A + R +++D+LITE
Sbjct: 195 DYSREEDRHLIPATVPRGVKIDVLITE 221
>GENEDB_PFALCIPARUM|PF14_0364 [details] [associations]
symbol:PF14_0364 "cleavage and polyadenylation
specifity factor protein, putative" species:5833 "Plasmodium
falciparum" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006378 "mRNA
polyadenylation" evidence=ISS] [GO:0006379 "mRNA cleavage"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:AE014187 GO:GO:0005847
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718 Pfam:PF11718
SMART:SM01098 RefSeq:XP_001348538.1 ProteinModelPortal:Q8IL83
PRIDE:Q8IL83 EnsemblProtists:PF14_0364:mRNA GeneID:811946
KEGG:pfa:PF14_0364 EuPathDB:PlasmoDB:PF3D7_1438500 OMA:CLITHFH
ProtClustDB:CLSZ2457730 Uniprot:Q8IL83
Length = 876
Score = 187 (70.9 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 37/107 (34%), Positives = 61/107 (57%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I+ + LG EVG+SCV++ + +M DCG+H A+ P I + D + +D
Sbjct: 4 INIVCLGGASEVGRSCVIIECDKTSVMLDCGIHPAFMGIGCLP----IYDAYDISK-VDL 58
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV 109
+ITHFH+DH GALP+ + G I+MT T+++ ++ DY ++
Sbjct: 59 CLITHFHMDHSGALPYLINKTRFKGRIFMTEATKSICYLLWNDYARI 105
Score = 127 (49.8 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ + I + M + ++ Q + +++ AY AGHV+GA MF ++ + +YTGDY+
Sbjct: 168 YDENDIDKTMDLIETLNFHQNFEFP-NVKFTAYRAGHVIGACMFLVEINNIRFLYTGDYS 226
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
DRH+ A I + + +LI E
Sbjct: 227 REIDRHIPIAEIPNIDVHVLICE 249
Score = 57 (25.1 bits), Expect = 9.7e-17, Sum P(2) = 9.7e-17
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 116 EVEQFTSDHIA-ECMKKVIAVDLKQTVQVDKDLQIRA 151
++ F+ D I + + K+IAVDLKQ ++++ L+ A
Sbjct: 794 QINLFSYDQILFDYISKIIAVDLKQHDEINEILKFNA 830
>UNIPROTKB|Q8IL83 [details] [associations]
symbol:PF14_0364 "Cleavage and polyadenylation specificity
factor protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0016787 EMBL:AE014187
GO:GO:0005847 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000203394 KO:K14403 InterPro:IPR021718
Pfam:PF11718 SMART:SM01098 RefSeq:XP_001348538.1
ProteinModelPortal:Q8IL83 PRIDE:Q8IL83
EnsemblProtists:PF14_0364:mRNA GeneID:811946 KEGG:pfa:PF14_0364
EuPathDB:PlasmoDB:PF3D7_1438500 OMA:CLITHFH ProtClustDB:CLSZ2457730
Uniprot:Q8IL83
Length = 876
Score = 187 (70.9 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 37/107 (34%), Positives = 61/107 (57%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I+ + LG EVG+SCV++ + +M DCG+H A+ P I + D + +D
Sbjct: 4 INIVCLGGASEVGRSCVIIECDKTSVMLDCGIHPAFMGIGCLP----IYDAYDISK-VDL 58
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV 109
+ITHFH+DH GALP+ + G I+MT T+++ ++ DY ++
Sbjct: 59 CLITHFHMDHSGALPYLINKTRFKGRIFMTEATKSICYLLWNDYARI 105
Score = 127 (49.8 bits), Expect = 4.9e-24, Sum P(2) = 4.9e-24
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ + I + M + ++ Q + +++ AY AGHV+GA MF ++ + +YTGDY+
Sbjct: 168 YDENDIDKTMDLIETLNFHQNFEFP-NVKFTAYRAGHVIGACMFLVEINNIRFLYTGDYS 226
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
DRH+ A I + + +LI E
Sbjct: 227 REIDRHIPIAEIPNIDVHVLICE 249
Score = 57 (25.1 bits), Expect = 9.7e-17, Sum P(2) = 9.7e-17
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 116 EVEQFTSDHIA-ECMKKVIAVDLKQTVQVDKDLQIRA 151
++ F+ D I + + K+IAVDLKQ ++++ L+ A
Sbjct: 794 QINLFSYDQILFDYISKIIAVDLKQHDEINEILKFNA 830
>UNIPROTKB|G5E9W3 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation-specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:CH471053 GO:GO:0003723 GO:GO:0004521
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
InterPro:IPR021718 Pfam:PF11718 SMART:SM01098 GO:GO:0008409
EMBL:AC080162 UniGene:Hs.515972 HGNC:HGNC:2326 ChiTaRS:CPSF3
ProteinModelPortal:G5E9W3 SMR:G5E9W3 PRIDE:G5E9W3
Ensembl:ENST00000460593 ArrayExpress:G5E9W3 Bgee:G5E9W3
Uniprot:G5E9W3
Length = 647
Score = 281 (104.0 bits), Expect = 9.8e-24, P = 9.8e-24
Identities = 62/174 (35%), Positives = 96/174 (55%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
M DCG+H P I + ID ++I+HFHLDH GALP+F + + G
Sbjct: 1 MLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISHFHLDHCGALPWFLQKTSFKGR 55
Query: 89 IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQ 148
+MT+ T+A+ +L DY KV ++ +T + E M K+ ++ + +V ++
Sbjct: 56 TFMTHATKAIYRWLLSDYVKVSNISADDM-LYTETDLEESMDKIETINFHEVKEV-AGIK 113
Query: 149 IRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
Y+AGHVLGAAMF ++ ++YTGD++ DRHL AA I ++ D+LI E
Sbjct: 114 FWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIE 167
>FB|FBgn0027873 [details] [associations]
symbol:Cpsf100 "Cleavage and polyadenylation specificity
factor 100" species:7227 "Drosophila melanogaster" [GO:0006379
"mRNA cleavage" evidence=ISS;NAS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS;IMP;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=NAS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006398 "histone mRNA 3'-end
processing" evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE014297 GO:GO:0022008 GO:GO:0006378
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 GO:GO:0006379
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 OMA:NNPFQFK
GO:GO:0006398 EMBL:AF160933 RefSeq:NP_651658.1 RefSeq:NP_733264.1
UniGene:Dm.1362 ProteinModelPortal:Q9V3D6 SMR:Q9V3D6 IntAct:Q9V3D6
STRING:Q9V3D6 PaxDb:Q9V3D6 PRIDE:Q9V3D6 EnsemblMetazoa:FBtr0085357
GeneID:43426 KEGG:dme:Dmel_CG1957 UCSC:CG1957-RA CTD:43426
FlyBase:FBgn0027873 InParanoid:Q8IML7 OrthoDB:EOG4XD261
PhylomeDB:Q9V3D6 GenomeRNAi:43426 NextBio:833860 Bgee:Q9V3D6
GermOnline:CG1957 Uniprot:Q9V3D6
Length = 756
Score = 217 (81.4 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 61/202 (30%), Positives = 99/202 (49%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+ GA E C ++ I+ RI+ DCG D + +F + K + +D ++++
Sbjct: 10 ISGAMDE-SPPCYILQIDDVRILLDCGW-----DEKFDANFIKELKRQV--HTLDAVLLS 61
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLED-YRKVLVDRRGEVEQFTSDHI 125
H H+GALP+ G N PIY T P + + + D Y G+ + F+ D +
Sbjct: 62 HPDAYHLGALPYLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHF--NMGDFDLFSLDDV 119
Query: 126 AECMKKVIAVDLKQTVQV-DKD--LQIRAYYAGHVLGAAMF-YAKVGDSAMVYTGDYNMT 181
+K+ + QTV + DK + I AGH++G ++ KVG+ +VY D+N
Sbjct: 120 DTAFEKITQLKYNQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHK 179
Query: 182 PDRHLGAARIDRLQL-DLLITE 202
+RHL +DRLQ LLIT+
Sbjct: 180 KERHLSGCELDRLQRPSLLITD 201
>UNIPROTKB|C9JZH6 [details] [associations]
symbol:CPSF3 "Cleavage and polyadenylation-specificity
factor subunit 3" species:9606 "Homo sapiens" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=IEA] [GO:0008409 "5'-3' exonuclease activity"
evidence=IEA] InterPro:IPR001279 Pfam:PF00753 GO:GO:0003723
GO:GO:0004521 GO:GO:0008409 EMBL:AC080162 HGNC:HGNC:2326
ChiTaRS:CPSF3 IPI:IPI00807384 ProteinModelPortal:C9JZH6 SMR:C9JZH6
STRING:C9JZH6 Ensembl:ENST00000475482 HOGENOM:HOG000191757
ArrayExpress:C9JZH6 Bgee:C9JZH6 Uniprot:C9JZH6
Length = 136
Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 47/139 (33%), Positives = 74/139 (53%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
M DCG+H P I + ID ++I+HFHLDH GALP+F + + G
Sbjct: 1 MLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISHFHLDHCGALPWFLQKTSFKGR 55
Query: 89 IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQ 148
+MT+ T+A+ +L DY KV ++ +T + E M K+ ++ + +V ++
Sbjct: 56 TFMTHATKAIYRWLLSDYVKVSNISADDM-LYTETDLEESMDKIETINFHEVKEV-AGIK 113
Query: 149 IRAYYAGHVLGAAMFYAKV 167
Y+AGHVLGAAMF ++
Sbjct: 114 FWCYHAGHVLGAAMFMIEI 132
>WB|WBGene00017313 [details] [associations]
symbol:cpsf-2 species:6239 "Caenorhabditis elegans"
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0051301 "cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0016246
"RNA interference" evidence=IMP] [GO:0040027 "negative regulation
of vulval development" evidence=IMP] InterPro:IPR001279
InterPro:IPR027075 SMART:SM00849 Pfam:PF07521 GO:GO:0005634
GO:GO:0009792 GO:GO:0016246 GO:GO:0006397 GO:GO:0003723
GO:GO:0016787 GO:GO:0000910 GO:GO:0040035 GO:GO:0040027
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343
OMA:NNPFQFK EMBL:FO080529 PIR:T32487 RefSeq:NP_504822.1
ProteinModelPortal:O17403 SMR:O17403 STRING:O17403 PaxDb:O17403
EnsemblMetazoa:F09G2.4 GeneID:179103 KEGG:cel:CELE_F09G2.4
CTD:179103 WormBase:F09G2.4 InParanoid:O17403 NextBio:903938
Uniprot:O17403
Length = 843
Score = 203 (76.5 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 57/199 (28%), Positives = 89/199 (44%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V ++ G C ++ ++G I+ DCG + QY F + F I ++I+
Sbjct: 9 VFSGAKDEGPLCYLLQVDGDYILLDCGWDERFG--LQY--FEELKP---FIPKISAVLIS 61
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H+G LP+ CG P+Y T P + + + D +D E E +T D +
Sbjct: 62 HPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVYSHLDVE-EFEHYTLDDVD 120
Query: 127 ECMKKVIAVDLKQTVQV--DKDLQIRAYYAGHVLGAAMF-YAKVGDSAMVYTGDYNMTPD 183
+KV V QTV + D + A AGH+LG +++ +V +VY D+N +
Sbjct: 121 TAFEKVEQVKYNQTVVLKGDSGVHFTALPAGHMLGGSIWRICRVTGEDIVYCVDFNHKKE 180
Query: 184 RHLGAARIDRLQLD-LLIT 201
RHL D LLIT
Sbjct: 181 RHLNGCSFDNFNRPHLLIT 199
>UNIPROTKB|O17403 [details] [associations]
symbol:cpsf-2 "Probable cleavage and polyadenylation
specificity factor subunit 2" species:6239 "Caenorhabditis elegans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR001279
InterPro:IPR027075 SMART:SM00849 Pfam:PF07521 GO:GO:0005634
GO:GO:0009792 GO:GO:0016246 GO:GO:0006397 GO:GO:0003723
GO:GO:0016787 GO:GO:0000910 GO:GO:0040035 GO:GO:0040027
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343
OMA:NNPFQFK EMBL:FO080529 PIR:T32487 RefSeq:NP_504822.1
ProteinModelPortal:O17403 SMR:O17403 STRING:O17403 PaxDb:O17403
EnsemblMetazoa:F09G2.4 GeneID:179103 KEGG:cel:CELE_F09G2.4
CTD:179103 WormBase:F09G2.4 InParanoid:O17403 NextBio:903938
Uniprot:O17403
Length = 843
Score = 203 (76.5 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 57/199 (28%), Positives = 89/199 (44%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V ++ G C ++ ++G I+ DCG + QY F + F I ++I+
Sbjct: 9 VFSGAKDEGPLCYLLQVDGDYILLDCGWDERFG--LQY--FEELKP---FIPKISAVLIS 61
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H+G LP+ CG P+Y T P + + + D +D E E +T D +
Sbjct: 62 HPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVYSHLDVE-EFEHYTLDDVD 120
Query: 127 ECMKKVIAVDLKQTVQV--DKDLQIRAYYAGHVLGAAMF-YAKVGDSAMVYTGDYNMTPD 183
+KV V QTV + D + A AGH+LG +++ +V +VY D+N +
Sbjct: 121 TAFEKVEQVKYNQTVVLKGDSGVHFTALPAGHMLGGSIWRICRVTGEDIVYCVDFNHKKE 180
Query: 184 RHLGAARIDRLQLD-LLIT 201
RHL D LLIT
Sbjct: 181 RHLNGCSFDNFNRPHLLIT 199
>DICTYBASE|DDB_G0270392 [details] [associations]
symbol:cpsf2 "cleavage and polyadenylation
specificity factor 100 kDa subunit" species:44689 "Dictyostelium
discoideum" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA;ISS] [GO:0006378 "mRNA
polyadenylation" evidence=IEA;ISS] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA;ISS]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
dictyBase:DDB_G0270392 Pfam:PF07521 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0006378 GO:GO:0003723 GO:GO:0016787
GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
OMA:NNPFQFK RefSeq:XP_646760.1 ProteinModelPortal:Q55BS1
STRING:Q55BS1 EnsemblProtists:DDB0233700 GeneID:8617733
KEGG:ddi:DDB_G0270392 ProtClustDB:CLSZ2431463 Uniprot:Q55BS1
Length = 784
Score = 192 (72.6 bits), Expect = 5.2e-14, P = 5.2e-14
Identities = 56/202 (27%), Positives = 95/202 (47%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
L ++ C ++ I+ I+ DCG+ +YN DFS + ID ++++H
Sbjct: 10 LSGAKDESPPCYLLEIDDFCILLDCGL--SYN-----LDFSLLEPLEKVAKKIDAVLLSH 62
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HIG LP+ G G IY T P + + L D + + + E +Q++ D+I
Sbjct: 63 SDTTHIGGLPYVVGKYGLTGTIYGTTPVLKMGTMFLYDLYENKMSQE-EFQQYSLDNIDS 121
Query: 128 CM--KKVIAVDLKQTVQVD---KDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
C + + Q + K + I Y AGH +GA+++ G ++VY DYN
Sbjct: 122 CFGEDRFKELSFSQHYSLSGKGKGISITPYLAGHTIGASVWKITKGTYSIVYAIDYNHRN 181
Query: 183 DRHLGAARI--DRLQLDLLITE 202
+ HL + ++ D L+ LLIT+
Sbjct: 182 EGHLDSLQLTSDILKPSLLITD 203
>UNIPROTKB|Q81SC3 [details] [associations]
symbol:BA_1737 "Metallo-beta-lactamase family protein"
species:1392 "Bacillus anthracis" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 SMART:SM00849 Pfam:PF07521
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0016787 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 RefSeq:NP_844172.1
RefSeq:YP_018378.1 ProteinModelPortal:Q81SC3 IntAct:Q81SC3
DNASU:1086535 EnsemblBacteria:EBBACT00000009201
EnsemblBacteria:EBBACT00000014472 GeneID:1086535 GeneID:2817971
KEGG:ban:BA_1737 KEGG:bar:GBAA_1737 PATRIC:18781074
HOGENOM:HOG000087450 OMA:SQHERVN ProtClustDB:CLSK2516952
BioCyc:BANT261594:GJ7F-1754-MONOMER Uniprot:Q81SC3
Length = 419
Score = 184 (69.8 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 49/174 (28%), Positives = 84/174 (48%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAG E G+SC V +I+FDCG++ +Y D YP R + F ++ + ++H
Sbjct: 8 GAG-EYGRSCYFVKNKETKILFDCGINRSYED--SYPKIER--EVVPF---LEAVFLSHI 59
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
H DH LP + GY I+ T T+ P E +R V + V +D +
Sbjct: 60 HEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPAYYEKWRNYNVTQGWNVPY--NDQNVKD 116
Query: 129 MKKVIAVDLK---QTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ + ++ + +Q+ L+ + Y+GHVLG+ F + + + Y+GDY+
Sbjct: 117 LNYIYVDEISNPNEWIQITPTLRFQWGYSGHVLGSVWFLVDMSHTYVFYSGDYS 170
>TIGR_CMR|BA_1737 [details] [associations]
symbol:BA_1737 "metallo-beta-lactamase family protein"
species:198094 "Bacillus anthracis str. Ames" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 SMART:SM00849 Pfam:PF07521
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0016787 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 RefSeq:NP_844172.1
RefSeq:YP_018378.1 ProteinModelPortal:Q81SC3 IntAct:Q81SC3
DNASU:1086535 EnsemblBacteria:EBBACT00000009201
EnsemblBacteria:EBBACT00000014472 GeneID:1086535 GeneID:2817971
KEGG:ban:BA_1737 KEGG:bar:GBAA_1737 PATRIC:18781074
HOGENOM:HOG000087450 OMA:SQHERVN ProtClustDB:CLSK2516952
BioCyc:BANT261594:GJ7F-1754-MONOMER Uniprot:Q81SC3
Length = 419
Score = 184 (69.8 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 49/174 (28%), Positives = 84/174 (48%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAG E G+SC V +I+FDCG++ +Y D YP R + F ++ + ++H
Sbjct: 8 GAG-EYGRSCYFVKNKETKILFDCGINRSYED--SYPKIER--EVVPF---LEAVFLSHI 59
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
H DH LP + GY I+ T T+ P E +R V + V +D +
Sbjct: 60 HEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPAYYEKWRNYNVTQGWNVPY--NDQNVKD 116
Query: 129 MKKVIAVDLK---QTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ + ++ + +Q+ L+ + Y+GHVLG+ F + + + Y+GDY+
Sbjct: 117 LNYIYVDEISNPNEWIQITPTLRFQWGYSGHVLGSVWFLVDMSHTYVFYSGDYS 170
>UNIPROTKB|Q8EJC6 [details] [associations]
symbol:SO_0541 "RNA-metabolizing metallo-beta-lactamase
family protein" species:211586 "Shewanella oneidensis MR-1"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 GO:GO:0016787 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 OMA:MAVEYMS HOGENOM:HOG000244774
KO:K07576 RefSeq:NP_716177.2 ProteinModelPortal:Q8EJC6
DNASU:1168409 GeneID:1168409 KEGG:son:SO_0541 PATRIC:23520762
ProtClustDB:CLSK2516780 Uniprot:Q8EJC6
Length = 480
Score = 176 (67.0 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 56/188 (29%), Positives = 94/188 (50%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LGA +EV SC +VT+ GK ++ DCG+ D R + F+ I +V++
Sbjct: 8 LGAAREVTGSCHLVTVAGKHLLLDCGLIQGGK-----ADELRNHEPFVFDPQTIVAVVLS 62
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLV-D------RRGE--- 116
H H+DH G LP + G++GPIY T L IML+D + V D +R +
Sbjct: 63 HAHIDHSGRLPLLVK-AGFDGPIYTHKATAELCAIMLKDAAMLQVRDTERTNKKRAKHDL 121
Query: 117 --VEQ-FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA-- 171
+E FT + + + + ++++ Q +V + I AGH+LG+A+ +G+
Sbjct: 122 APLEPLFTVEDAEQAISQFVSLEYGQVTRVIPHVDICLSDAGHILGSALVELWLGEGKSQ 181
Query: 172 --MVYTGD 177
+V++GD
Sbjct: 182 KKIVFSGD 189
>TIGR_CMR|SO_0541 [details] [associations]
symbol:SO_0541 "metallo-beta-lactamase family protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003824 "catalytic activity"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
OMA:MAVEYMS HOGENOM:HOG000244774 KO:K07576 RefSeq:NP_716177.2
ProteinModelPortal:Q8EJC6 DNASU:1168409 GeneID:1168409
KEGG:son:SO_0541 PATRIC:23520762 ProtClustDB:CLSK2516780
Uniprot:Q8EJC6
Length = 480
Score = 176 (67.0 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 56/188 (29%), Positives = 94/188 (50%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LGA +EV SC +VT+ GK ++ DCG+ D R + F+ I +V++
Sbjct: 8 LGAAREVTGSCHLVTVAGKHLLLDCGLIQGGK-----ADELRNHEPFVFDPQTIVAVVLS 62
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLV-D------RRGE--- 116
H H+DH G LP + G++GPIY T L IML+D + V D +R +
Sbjct: 63 HAHIDHSGRLPLLVK-AGFDGPIYTHKATAELCAIMLKDAAMLQVRDTERTNKKRAKHDL 121
Query: 117 --VEQ-FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA-- 171
+E FT + + + + ++++ Q +V + I AGH+LG+A+ +G+
Sbjct: 122 APLEPLFTVEDAEQAISQFVSLEYGQVTRVIPHVDICLSDAGHILGSALVELWLGEGKSQ 181
Query: 172 --MVYTGD 177
+V++GD
Sbjct: 182 KKIVFSGD 189
>TAIR|locus:2172843 [details] [associations]
symbol:CPSF100 "cleavage and polyadenylation specificity
factor 100" species:3702 "Arabidopsis thaliana" [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009793 "embryo development ending
in seed dormancy" evidence=NAS] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IPI] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS;NAS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0035194 "posttranscriptional gene
silencing by RNA" evidence=IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0006306 "DNA methylation" evidence=RCA] [GO:0006342 "chromatin
silencing" evidence=RCA] [GO:0006396 "RNA processing" evidence=RCA]
[GO:0006397 "mRNA processing" evidence=RCA] [GO:0007267 "cell-cell
signaling" evidence=RCA] [GO:0009220 "pyrimidine ribonucleotide
biosynthetic process" evidence=RCA] [GO:0009616 "virus induced gene
silencing" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0010388 "cullin deneddylation"
evidence=RCA] [GO:0016569 "covalent chromatin modification"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=RCA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 GO:GO:0009506 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006378 EMBL:AB005244 GO:GO:0003723
GO:GO:0016787 GO:GO:0005847 GO:GO:0006379 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 EMBL:AF283277 EMBL:AY034982
EMBL:BT004374 IPI:IPI00521104 RefSeq:NP_197776.1 UniGene:At.25191
ProteinModelPortal:Q9LKF9 SMR:Q9LKF9 IntAct:Q9LKF9 STRING:Q9LKF9
PaxDb:Q9LKF9 PRIDE:Q9LKF9 EnsemblPlants:AT5G23880.1 GeneID:832453
KEGG:ath:AT5G23880 TAIR:At5g23880 HOGENOM:HOG000264343
InParanoid:Q9LKF9 OMA:NNPFQFK PhylomeDB:Q9LKF9
ProtClustDB:CLSN2686300 Genevestigator:Q9LKF9 GermOnline:AT5G23880
GO:GO:0035194 Uniprot:Q9LKF9
Length = 739
Score = 178 (67.7 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 52/189 (27%), Positives = 95/189 (50%)
Query: 20 VVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFF 79
+V+I+G + DCG + ++ P SR++ + ID ++++H HIGALP+
Sbjct: 22 LVSIDGFNFLIDCGWNDLFDTSLLEP-LSRVAST------IDAVLLSHPDTLHIGALPYA 74
Query: 80 TEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRR-GEVEQFTSDHIAECMKKVIAVDLK 138
+ G + P+Y T P L +L Y + L ++ + + FT D I + VI +
Sbjct: 75 MKQLGLSAPVYATEPVHRLG--LLTMYDQFLSRKQVSDFDLFTLDDIDSAFQNVIRLTYS 132
Query: 139 QTVQVD---KDLQIRAYYAGHVLGAAMF-YAKVGDSAMVYTGDYNMTPDRHLGAARIDR- 193
Q + + + I + AGH+LG +++ K G+ ++Y DYN +RHL +
Sbjct: 133 QNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGED-VIYAVDYNHRKERHLNGTVLQSF 191
Query: 194 LQLDLLITE 202
++ +LIT+
Sbjct: 192 VRPAVLITD 200
>TIGR_CMR|CPS_2623 [details] [associations]
symbol:CPS_2623 "metallo-beta-lactamase family protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000244774 KO:K07576 RefSeq:YP_269337.1
ProteinModelPortal:Q481D2 STRING:Q481D2 GeneID:3521490
KEGG:cps:CPS_2623 PATRIC:21468305 OMA:HGPMVII
ProtClustDB:CLSK2524370 BioCyc:CPSY167879:GI48-2685-MONOMER
Uniprot:Q481D2
Length = 451
Score = 170 (64.9 bits), Expect = 4.7e-12, P = 4.7e-12
Identities = 57/187 (30%), Positives = 81/187 (43%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G G G V T K I+ DCG++ Y R +R D + +D IV+TH
Sbjct: 8 GTGTVTGSKYFVETSTTK-ILVDCGLYQGYKWLRAR---NREPLPLDLKS-LDAIVLTHA 62
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLED-----------YRKVLVDRRGEV 117
HLDH G +P + G+ G +Y T +L I+L D Y K + R
Sbjct: 63 HLDHSGFIPALYKQ-GFRGHVYAHQATISLCSILLPDSGHIQEDDAKFYGKHKISRHENP 121
Query: 118 EQFTSDHIAE-CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
E AE C+ AVD + ++ D++I AGH+LGAA K + ++G
Sbjct: 122 EPLYDKATAEACLSLFKAVDFNEEFKIG-DIEIELQSAGHILGAASVILKADGKRVGFSG 180
Query: 177 DYNMTPD 183
D PD
Sbjct: 181 DVGR-PD 186
>UNIPROTKB|F1SD85 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006379
"mRNA cleavage" evidence=IEA] [GO:0006378 "mRNA polyadenylation"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 GO:GO:0016787
InterPro:IPR022712 PANTHER:PTHR11203:SF5 Pfam:PF10996 SMART:SM01027
GeneTree:ENSGT00700000104551 EMBL:CU468363
Ensembl:ENSSSCT00000002717 OMA:GANDESP Uniprot:F1SD85
Length = 385
Score = 161 (61.7 bits), Expect = 3.2e-11, P = 3.2e-11
Identities = 54/208 (25%), Positives = 88/208 (42%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I L QE C ++ ++ R + DCG +++H + K + ID
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCG----WDEHFSMDIIDSLRKHV---HQIDA 57
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++++H H+GALP+ G N IY T P + + + D L R E FT
Sbjct: 58 VLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYD----LYQSRHNTEDFTL 113
Query: 123 ---DHIAECMKKVIAVDLKQTVQVD---KDLQIRAYYAGHVLGAAMF-YAKVGDSAMVYT 175
D + K+ + Q V + L I AGH++G ++ K G+ +VY
Sbjct: 114 FTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYA 173
Query: 176 GDYNMTPDRHLGAARIDRLQL-DLLITE 202
D+N + HL ++ L LLIT+
Sbjct: 174 VDFNHKREIHLNGCSLEMLSRPSLLITD 201
>UNIPROTKB|Q9KV92 [details] [associations]
symbol:VC_0264 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0016787
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
KO:K07576 OMA:CHIDHVG PIR:F82345 RefSeq:NP_229920.1
ProteinModelPortal:Q9KV92 DNASU:2614470 GeneID:2614470
KEGG:vch:VC0264 PATRIC:20079570 ProtClustDB:CLSK2517501
Uniprot:Q9KV92
Length = 455
Score = 162 (62.1 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 48/175 (27%), Positives = 85/175 (48%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G V SC + +G+ ++ DCG+ ++ +F+ +D +++TH
Sbjct: 24 GGKASVTGSCHELRADGQALLIDCGLFQGADERPLAVEFAL--------GHVDALILTHA 75
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
H+DHIG LP+ G PIY T T L P+MLED K+ + + S+ +
Sbjct: 76 HIDHIGRLPWLLA-AGLKQPIYSTAATAELVPLMLEDGLKLQLGMSPK----QSERVLTE 130
Query: 129 MKKVIAV-DLKQ--TVQVDK--DLQIRAYYAGHVLGAAMF-YAKVGDSAMVYTGD 177
+++++ V D ++ VQ + L +R AGH+LG+A + +V++GD
Sbjct: 131 VRRLLRVQDYQKWFAVQPKRADSLWVRFQPAGHILGSAYVEIRRPNGEVVVFSGD 185
>TIGR_CMR|VC_0264 [details] [associations]
symbol:VC_0264 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001279
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0016787 InterPro:IPR022712
InterPro:IPR011108 Pfam:PF10996 SMART:SM01027 KO:K07576 OMA:CHIDHVG
PIR:F82345 RefSeq:NP_229920.1 ProteinModelPortal:Q9KV92
DNASU:2614470 GeneID:2614470 KEGG:vch:VC0264 PATRIC:20079570
ProtClustDB:CLSK2517501 Uniprot:Q9KV92
Length = 455
Score = 162 (62.1 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 48/175 (27%), Positives = 85/175 (48%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G V SC + +G+ ++ DCG+ ++ +F+ +D +++TH
Sbjct: 24 GGKASVTGSCHELRADGQALLIDCGLFQGADERPLAVEFAL--------GHVDALILTHA 75
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
H+DHIG LP+ G PIY T T L P+MLED K+ + + S+ +
Sbjct: 76 HIDHIGRLPWLLA-AGLKQPIYSTAATAELVPLMLEDGLKLQLGMSPK----QSERVLTE 130
Query: 129 MKKVIAV-DLKQ--TVQVDK--DLQIRAYYAGHVLGAAMF-YAKVGDSAMVYTGD 177
+++++ V D ++ VQ + L +R AGH+LG+A + +V++GD
Sbjct: 131 VRRLLRVQDYQKWFAVQPKRADSLWVRFQPAGHILGSAYVEIRRPNGEVVVFSGD 185
>MGI|MGI:1861601 [details] [associations]
symbol:Cpsf2 "cleavage and polyadenylation specific factor
2" species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 MGI:MGI:1861601
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343 OMA:NNPFQFK
CTD:53981 HOVERGEN:HBG051106 OrthoDB:EOG4MCWZQ GO:GO:0006398
EMBL:AF012822 EMBL:BC013628 EMBL:BC007163 IPI:IPI00314302
RefSeq:NP_058552.1 UniGene:Mm.716 ProteinModelPortal:O35218
SMR:O35218 STRING:O35218 PhosphoSite:O35218 PaxDb:O35218
PRIDE:O35218 Ensembl:ENSMUST00000047357 GeneID:51786 KEGG:mmu:51786
UCSC:uc007otx.2 InParanoid:O35218 NextBio:308008 Bgee:O35218
CleanEx:MM_CPSF2 Genevestigator:O35218
GermOnline:ENSMUSG00000041781 Uniprot:O35218
Length = 782
Score = 164 (62.8 bits), Expect = 5.2e-11, P = 5.2e-11
Identities = 55/208 (26%), Positives = 88/208 (42%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I L QE C ++ ++ R + DCG +++H + K + ID
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCG----WDEHFSVDIIDSLRKHV---HQIDA 57
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++++H H+GALPF G N IY T P + + + D L R E FT
Sbjct: 58 VLLSHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYD----LYQSRHNTEDFTL 113
Query: 123 ---DHIAECMKKVIAVDLKQTVQVD---KDLQIRAYYAGHVLGAAMF-YAKVGDSAMVYT 175
D + K+ + Q V + L I AGH++G ++ K G+ +VY
Sbjct: 114 FTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYA 173
Query: 176 GDYNMTPDRHLGAARIDRLQL-DLLITE 202
D+N + HL ++ L LLIT+
Sbjct: 174 VDFNHKREIHLNGCSLEMLSRPSLLITD 201
>RGD|1309687 [details] [associations]
symbol:Cpsf2 "cleavage and polyadenylation specific factor 2,
100kDa" species:10116 "Rattus norvegicus" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=IEA;ISO] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006398 "histone mRNA
3'-end processing" evidence=IEA;ISO] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001279 InterPro:IPR027075
Pfam:PF00753 SMART:SM00849 Pfam:PF07521 RGD:1309687 GO:GO:0016787
EMBL:CH473982 GO:GO:0005847 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK CTD:53981
OrthoDB:EOG4MCWZQ GO:GO:0006398 IPI:IPI00189534
RefSeq:NP_001100223.1 UniGene:Rn.8038 Ensembl:ENSRNOT00000008612
GeneID:299256 KEGG:rno:299256 UCSC:RGD:1309687 NextBio:645098
Uniprot:D3Z9E6
Length = 782
Score = 164 (62.8 bits), Expect = 5.2e-11, P = 5.2e-11
Identities = 55/208 (26%), Positives = 88/208 (42%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I L QE C ++ ++ R + DCG +++H + K + ID
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCG----WDEHFSVDIIDSLRKHV---HQIDA 57
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++++H H+GALPF G N IY T P + + + D L R E FT
Sbjct: 58 VLLSHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYD----LYQSRHNTEDFTL 113
Query: 123 ---DHIAECMKKVIAVDLKQTVQVD---KDLQIRAYYAGHVLGAAMF-YAKVGDSAMVYT 175
D + K+ + Q V + L I AGH++G ++ K G+ +VY
Sbjct: 114 FTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYA 173
Query: 176 GDYNMTPDRHLGAARIDRLQL-DLLITE 202
D+N + HL ++ L LLIT+
Sbjct: 174 VDFNHKREIHLNGCSLEMLSRPSLLITD 201
>TIGR_CMR|CHY_2049 [details] [associations]
symbol:CHY_2049 "metallo-beta-lactamase family protein"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0016787 eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108
Pfam:PF10996 SMART:SM01027 RefSeq:YP_360868.1
ProteinModelPortal:Q3AAG6 STRING:Q3AAG6 GeneID:3728507
KEGG:chy:CHY_2049 PATRIC:21277179 HOGENOM:HOG000244774 KO:K07576
OMA:GGRIVHH BioCyc:CHYD246194:GJCN-2048-MONOMER Uniprot:Q3AAG6
Length = 504
Score = 161 (61.7 bits), Expect = 5.5e-11, P = 5.5e-11
Identities = 50/170 (29%), Positives = 81/170 (47%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYN--DHRQYPDFSRISKSCDFN-NAIDCIVI 65
GA V SC + + G + + DCG+ R Y +F FN I+ I++
Sbjct: 7 GAADTVTGSCYLFNVAGHKFLVDCGLFQGPKAIKERNYGEFP-------FNPREIEFILL 59
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLED---YRKVLVDRR-------G 115
TH H+DH G +P + G+ G IY T PT LA +ML D +++ V+R+ G
Sbjct: 60 THAHIDHSGLIPKLVKK-GFKGTIYATEPTVDLAAVMLPDSGHVQEMEVERKNRKLRRAG 118
Query: 116 EVEQ---FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM 162
+ E +T+D + + L+ + L++ + AGH+LG+AM
Sbjct: 119 KPELQPIYTADDAFNALAYFQKIPLETPITPLPGLEVTFFDAGHILGSAM 168
>UNIPROTKB|Q10568 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation specificity
factor subunit 2" species:9913 "Bos taurus" [GO:0006398 "histone
mRNA 3'-end processing" evidence=ISS] [GO:0005847 "mRNA cleavage
and polyadenylation specificity factor complex" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 eggNOG:COG1236 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 HOGENOM:HOG000264343 OMA:NNPFQFK
EMBL:X75931 IPI:IPI00688446 PIR:A56351 RefSeq:NP_787002.1
UniGene:Bt.4077 ProteinModelPortal:Q10568 STRING:Q10568
PRIDE:Q10568 Ensembl:ENSBTAT00000013500 GeneID:327689
KEGG:bta:327689 CTD:53981 HOVERGEN:HBG051106 InParanoid:Q10568
OrthoDB:EOG4MCWZQ NextBio:20810154 GO:GO:0006398 Uniprot:Q10568
Length = 782
Score = 161 (61.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 54/208 (25%), Positives = 88/208 (42%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I L QE C ++ ++ R + DCG +++H + K + ID
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCG----WDEHFSMDIIDSLRKHV---HQIDA 57
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++++H H+GALP+ G N IY T P + + + D L R E FT
Sbjct: 58 VLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYD----LYQSRHNTEDFTL 113
Query: 123 ---DHIAECMKKVIAVDLKQTVQVD---KDLQIRAYYAGHVLGAAMF-YAKVGDSAMVYT 175
D + K+ + Q V + L I AGH++G ++ K G+ +VY
Sbjct: 114 FTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYA 173
Query: 176 GDYNMTPDRHLGAARIDRLQL-DLLITE 202
D+N + HL ++ L LLIT+
Sbjct: 174 VDFNHKREIHLNGCSLEMLSRPSLLITD 201
>UNIPROTKB|E2R496 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006398 "histone mRNA 3'-end processing"
evidence=IEA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0006378 "mRNA polyadenylation" evidence=IEA] InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
GO:GO:0016787 GO:GO:0005847 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK CTD:53981 GO:GO:0006398
EMBL:AAEX03005582 RefSeq:XP_537353.2 ProteinModelPortal:E2R496
Ensembl:ENSCAFT00000017381 GeneID:480230 KEGG:cfa:480230
NextBio:20855279 Uniprot:E2R496
Length = 782
Score = 161 (61.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 54/208 (25%), Positives = 88/208 (42%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I L QE C ++ ++ R + DCG +++H + K + ID
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCG----WDEHFSMDIIDSLRKHV---HQIDA 57
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++++H H+GALP+ G N IY T P + + + D L R E FT
Sbjct: 58 VLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYD----LYQSRHNTEDFTL 113
Query: 123 ---DHIAECMKKVIAVDLKQTVQVD---KDLQIRAYYAGHVLGAAMF-YAKVGDSAMVYT 175
D + K+ + Q V + L I AGH++G ++ K G+ +VY
Sbjct: 114 FTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYA 173
Query: 176 GDYNMTPDRHLGAARIDRLQL-DLLITE 202
D+N + HL ++ L LLIT+
Sbjct: 174 VDFNHKREIHLNGCSLEMLSRPSLLITD 201
>UNIPROTKB|Q9P2I0 [details] [associations]
symbol:CPSF2 "Cleavage and polyadenylation specificity
factor subunit 2" species:9606 "Homo sapiens" [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006398 "histone mRNA 3'-end processing"
evidence=IDA] [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR001279
InterPro:IPR027075 Pfam:PF00753 SMART:SM00849 Pfam:PF07521
EMBL:CH471061 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0016787
GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788 GO:GO:0005847
GO:GO:0006369 eggNOG:COG1236 KO:K14402 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 Reactome:REACT_78
HOGENOM:HOG000264343 OMA:NNPFQFK CTD:53981 HOVERGEN:HBG051106
OrthoDB:EOG4MCWZQ GO:GO:0006398 EMBL:AK001627 EMBL:BC070095
EMBL:AB037788 EMBL:AL442079 IPI:IPI00419531 RefSeq:NP_059133.1
UniGene:Hs.657632 UniGene:Hs.736541 ProteinModelPortal:Q9P2I0
SMR:Q9P2I0 DIP:DIP-42500N IntAct:Q9P2I0 MINT:MINT-1697677
STRING:Q9P2I0 PhosphoSite:Q9P2I0 DMDM:51338827 PaxDb:Q9P2I0
PeptideAtlas:Q9P2I0 PRIDE:Q9P2I0 Ensembl:ENST00000298875
GeneID:53981 KEGG:hsa:53981 UCSC:uc001yah.2 GeneCards:GC14P092588
HGNC:HGNC:2325 HPA:HPA024238 MIM:606028 neXtProt:NX_Q9P2I0
PharmGKB:PA26842 InParanoid:Q9P2I0 PhylomeDB:Q9P2I0 ChiTaRS:CPSF2
GenomeRNAi:53981 NextBio:56268 ArrayExpress:Q9P2I0 Bgee:Q9P2I0
CleanEx:HS_CPSF2 Genevestigator:Q9P2I0 GermOnline:ENSG00000165934
Uniprot:Q9P2I0
Length = 782
Score = 161 (61.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 54/208 (25%), Positives = 88/208 (42%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I L QE C ++ ++ R + DCG +++H + K + ID
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCG----WDEHFSMDIIDSLRKHV---HQIDA 57
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++++H H+GALP+ G N IY T P + + + D L R E FT
Sbjct: 58 VLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYD----LYQSRHNTEDFTL 113
Query: 123 ---DHIAECMKKVIAVDLKQTVQVD---KDLQIRAYYAGHVLGAAMF-YAKVGDSAMVYT 175
D + K+ + Q V + L I AGH++G ++ K G+ +VY
Sbjct: 114 FTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYA 173
Query: 176 GDYNMTPDRHLGAARIDRLQL-DLLITE 202
D+N + HL ++ L LLIT+
Sbjct: 174 VDFNHKREIHLNGCSLEMLSRPSLLITD 201
>UNIPROTKB|F1NMN0 [details] [associations]
symbol:CPSF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IEA]
[GO:0006398 "histone mRNA 3'-end processing" evidence=IEA]
InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 GO:GO:0005847 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027
GeneTree:ENSGT00700000104551 OMA:NNPFQFK GO:GO:0006398
EMBL:AADN02003653 IPI:IPI00651282 Ensembl:ENSGALT00000017538
Uniprot:F1NMN0
Length = 782
Score = 154 (59.3 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 52/208 (25%), Positives = 88/208 (42%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I L QE C ++ ++ R + DCG ++++ + K + +D
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCG----WDENFSMDIIDSLKKHV---HQVDA 57
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++++H H+GALP+ G N IY T P + + + D L R E FT
Sbjct: 58 VLLSHPDPLHLGALPYAVGKMGLNCAIYATIPVYKMGQMFMYD----LYQSRHNTEDFTL 113
Query: 123 ---DHIAECMKKVIAVDLKQTVQVD---KDLQIRAYYAGHVLGAAMF-YAKVGDSAMVYT 175
D + K+ + Q V + L I AGH++G ++ K G+ +VY
Sbjct: 114 FTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYA 173
Query: 176 GDYNMTPDRHLGAARIDRLQL-DLLITE 202
D+N + HL ++ L LLIT+
Sbjct: 174 VDFNHKREIHLNGCSLEMLSRPSLLITD 201
>ZFIN|ZDB-GENE-040718-79 [details] [associations]
symbol:cpsf2 "cleavage and polyadenylation specific
factor 2" species:7955 "Danio rerio" [GO:0006378 "mRNA
polyadenylation" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 ZFIN:ZDB-GENE-040718-79 GO:GO:0016787
eggNOG:COG1236 KO:K14402 InterPro:IPR022712 InterPro:IPR025069
InterPro:IPR011108 PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299
SMART:SM01027 HOGENOM:HOG000264343 CTD:53981 HOVERGEN:HBG051106
OrthoDB:EOG4MCWZQ EMBL:BC076029 IPI:IPI00512505
RefSeq:NP_001002384.1 UniGene:Dr.121547 ProteinModelPortal:Q6DHE5
STRING:Q6DHE5 PRIDE:Q6DHE5 GeneID:436657 KEGG:dre:436657
InParanoid:Q6DHE5 NextBio:20831102 ArrayExpress:Q6DHE5 Bgee:Q6DHE5
Uniprot:Q6DHE5
Length = 790
Score = 151 (58.2 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 51/208 (24%), Positives = 86/208 (41%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I L QE C ++ ++ R + DCG ++ I + + +D
Sbjct: 5 IKLTALSGVQEESALCYLLQVDEFRFLLDCGWDETFS-------MDIIDSLKRYVHQVDA 57
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++++H H+GALP+ G N IY T P + + + D L R E FT
Sbjct: 58 VLLSHPDHVHLGALPYAVGKLGLNCTIYATIPVYKMGQMFMYD----LYQSRHNTEDFTL 113
Query: 123 ---DHIAECMKKVIAVDLKQTVQVD---KDLQIRAYYAGHVLGAAMF-YAKVGDSAMVYT 175
D + K+ + Q V + L I AGH++G ++ K G+ ++Y
Sbjct: 114 FTLDDVDSAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIIYG 173
Query: 176 GDYNMTPDRHLGAARIDRLQL-DLLITE 202
D+N + HL ++ L LLIT+
Sbjct: 174 VDFNHKREIHLNGCSLESLSRPSLLITD 201
>UNIPROTKB|Q9W799 [details] [associations]
symbol:cpsf2 "Cleavage and polyadenylation specificity
factor subunit 2" species:8355 "Xenopus laevis" [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] InterPro:IPR001279 InterPro:IPR027075 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 GO:GO:0005737 GO:GO:0006397
GO:GO:0003723 GO:GO:0016787 GO:GO:0005847 KO:K14402
InterPro:IPR022712 InterPro:IPR025069 InterPro:IPR011108
PANTHER:PTHR11203:SF5 Pfam:PF10996 Pfam:PF13299 SMART:SM01027
CTD:53981 HOVERGEN:HBG051106 EMBL:AF139986 RefSeq:NP_001081123.1
UniGene:Xl.3876 ProteinModelPortal:Q9W799 GeneID:394394
KEGG:xla:394394 Xenbase:XB-GENE-950598 Uniprot:Q9W799
Length = 783
Score = 148 (57.2 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 50/204 (24%), Positives = 92/204 (45%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
++GA QE C ++ ++ R + DCG ++++ + K + + +D ++++
Sbjct: 10 LVGA-QEESAVCYLLQVDEFRFLLDCG----WDENFSMDIIDSVKK---YVHQVDAVLLS 61
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI- 125
H H+GALP+ G N IY T P + + + D L R E F+ +
Sbjct: 62 HPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYD----LYQSRHNTEDFSLFSLD 117
Query: 126 -AEC-MKKVIAVDLKQTVQVD---KDLQIRAYYAGHVLGAAMF-YAKVGDSAMVYTGDYN 179
+C K+ + Q V + L I AGH++G ++ K G+ +VY D+N
Sbjct: 118 DVDCAFDKIQQLKYNQIVHLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFN 177
Query: 180 MTPDRHLGAARIDRLQL-DLLITE 202
+ HL ++ + LLIT+
Sbjct: 178 HKREIHLNGCSLEMINRPSLLITD 201
>UNIPROTKB|Q74C32 [details] [associations]
symbol:GSU1843 "RNA exonuclease, beta-lactamase fold
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001279 Pfam:PF00753
SMART:SM00849 Pfam:PF07521 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0004527 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 HOGENOM:HOG000244774 KO:K07576 RefSeq:NP_952893.1
ProteinModelPortal:Q74C32 GeneID:2688625 KEGG:gsu:GSU1843
PATRIC:22026545 OMA:CHIDHVG ProtClustDB:CLSK2516562
BioCyc:GSUL243231:GH27-1786-MONOMER Uniprot:Q74C32
Length = 475
Score = 145 (56.1 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 48/172 (27%), Positives = 80/172 (46%)
Query: 17 SC--VVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIG 74
SC +V++ N I+ DCG+ + ND F I D + +V+TH H+DH G
Sbjct: 15 SCHELVISDNAA-ILIDCGL-LQGNDGAGGKRFPFIDFPLD---RVKGLVLTHVHIDHCG 69
Query: 75 ALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIA 134
+P G+ GPI+ + + L P++LED KV + R E + + K+++
Sbjct: 70 RIPHLLG-AGFQGPIWCSEASALLLPLVLEDAVKVGITRD---EHLIARFLNAVKKRLVP 125
Query: 135 VDLKQTVQVD----KDLQIRAYYAGHVLGAAMFYAKVGDSAMV-YTGDYNMT 181
+ + Q+ + +R AGH+LG+A V ++ TG N T
Sbjct: 126 LPYDRWHQLGSWDGRSASLRLQQAGHILGSAYVEVSVSPASQAEQTGTVNGT 177
>TIGR_CMR|GSU_1843 [details] [associations]
symbol:GSU_1843 "metallo-beta-lactamase family protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0004527
InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996 SMART:SM01027
HOGENOM:HOG000244774 KO:K07576 RefSeq:NP_952893.1
ProteinModelPortal:Q74C32 GeneID:2688625 KEGG:gsu:GSU1843
PATRIC:22026545 OMA:CHIDHVG ProtClustDB:CLSK2516562
BioCyc:GSUL243231:GH27-1786-MONOMER Uniprot:Q74C32
Length = 475
Score = 145 (56.1 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 48/172 (27%), Positives = 80/172 (46%)
Query: 17 SC--VVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIG 74
SC +V++ N I+ DCG+ + ND F I D + +V+TH H+DH G
Sbjct: 15 SCHELVISDNAA-ILIDCGL-LQGNDGAGGKRFPFIDFPLD---RVKGLVLTHVHIDHCG 69
Query: 75 ALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIA 134
+P G+ GPI+ + + L P++LED KV + R E + + K+++
Sbjct: 70 RIPHLLG-AGFQGPIWCSEASALLLPLVLEDAVKVGITRD---EHLIARFLNAVKKRLVP 125
Query: 135 VDLKQTVQVD----KDLQIRAYYAGHVLGAAMFYAKVGDSAMV-YTGDYNMT 181
+ + Q+ + +R AGH+LG+A V ++ TG N T
Sbjct: 126 LPYDRWHQLGSWDGRSASLRLQQAGHILGSAYVEVSVSPASQAEQTGTVNGT 177
>TIGR_CMR|DET_1061 [details] [associations]
symbol:DET_1061 "metallo-beta-lactamase family protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR001279 Pfam:PF00753 SMART:SM00849
Pfam:PF07521 GO:GO:0016787 EMBL:CP000027 GenomeReviews:CP000027_GR
eggNOG:COG1236 InterPro:IPR022712 InterPro:IPR011108 Pfam:PF10996
SMART:SM01027 OMA:MAVEYMS HOGENOM:HOG000244774 KO:K07576
RefSeq:YP_181776.1 ProteinModelPortal:Q3Z7M3 STRING:Q3Z7M3
GeneID:3229629 KEGG:det:DET1061 PATRIC:21609167
ProtClustDB:CLSK2516599 BioCyc:DETH243164:GJNF-1062-MONOMER
Uniprot:Q3Z7M3
Length = 468
Score = 144 (55.7 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 45/187 (24%), Positives = 85/187 (45%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYN-DHRQYPDFSRISKSCDFNNA 59
M+I+ LGA + V S ++ + +++ DCG++ R + F +S
Sbjct: 1 MSIEIQFLGAARNVTGSRYLIKTDHTQLLVDCGLYQERRLQDRNWQPFEIPPQS------ 54
Query: 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLED----------YRKV 109
+ ++I+H H+DH G LP + G+ GP++ T T +A I L D ++K
Sbjct: 55 LSAVIISHAHIDHCGLLPKLVKE-GFAGPVFATEATAEIARISLTDAGKLQEEDAAFKKK 113
Query: 110 LVDRRG------EVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMF 163
+R G E+ +T++ V+ + + V +D+ + AGHV G+A
Sbjct: 114 RHEREGRKTKYPEIPLYTAEDARAVSPLFKTVEYSREIAVTEDITATFHNAGHVFGSASI 173
Query: 164 YAKVGDS 170
K+ ++
Sbjct: 174 ELKIQEN 180
>UNIPROTKB|H0YBH8 [details] [associations]
symbol:INTS9 "Integrator complex subunit 9" species:9606
"Homo sapiens" [GO:0016180 "snRNA processing" evidence=IEA]
[GO:0032039 "integrator complex" evidence=IEA] InterPro:IPR027074
PANTHER:PTHR11203:SF2 EMBL:AC040975 EMBL:AC131969 HGNC:HGNC:25592
ChiTaRS:INTS9 Ensembl:ENST00000524081 Uniprot:H0YBH8
Length = 223
Score = 110 (43.8 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 30/107 (28%), Positives = 55/107 (51%)
Query: 58 NAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPT---RALAPIMLEDYRKVLVDRR 114
+ +D I+I+++H + ALP+ TE G+ G +Y T PT L P L+D +V RR
Sbjct: 86 STVDVILISNYHC--MMALPYITEHTGFTGTVYATEPTVQIGRLLPSPLKDAVEVSTWRR 143
Query: 115 GEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAA 161
+T + + K+ V Q +++ +Q+ +G+ LG++
Sbjct: 144 C----YTMQEVNSALSKIQLVGYSQKIELFGAVQVTPLSSGYALGSS 186
Score = 44 (20.5 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 18 CVVVTINGKRIMFDCGMHM 36
C V+ IM DCG+ M
Sbjct: 6 CNVLKFKSTTIMLDCGLDM 24
>TIGR_CMR|DET_0438 [details] [associations]
symbol:DET_0438 "metallo-beta-lactamase family protein"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003824
"catalytic activity" evidence=ISS] [GO:0008152 "metabolic process"
evidence=ISS] InterPro:IPR001279 InterPro:IPR004613 Pfam:PF00753
PIRSF:PIRSF004803 SMART:SM00849 Pfam:PF07521 GO:GO:0046872
GO:GO:0003723 EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0016788
InterPro:IPR011108 eggNOG:COG0595 HOGENOM:HOG000280201 KO:K12574
PANTHER:PTHR11203:SF22 TIGRFAMs:TIGR00649 OMA:FLVDSTN
RefSeq:YP_181182.1 ProteinModelPortal:Q3Z9B7 STRING:Q3Z9B7
GeneID:3230229 KEGG:det:DET0438 PATRIC:21607945
ProtClustDB:CLSK837476 BioCyc:DETH243164:GJNF-438-MONOMER
Uniprot:Q3Z9B7
Length = 551
Score = 116 (45.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 34/102 (33%), Positives = 50/102 (49%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND----HRQYPDFSRISKSCDFNNAIDCI 63
LG E+GK+ + V I+ DCG+ + PD S + ++ + I
Sbjct: 11 LGGLGEIGKNMMSVEYGEDIILIDCGLMFPEEEMLGIDLVIPDISYVLEN---REKVRGI 67
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLED 105
VITH H DHIGALP+ + N PIY T T+ L + L++
Sbjct: 68 VITHGHEDHIGALPYI--LPQINVPIYCTKLTQGLISVKLKE 107
Score = 37 (18.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 94 PTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA---ECMKKVIAVDLKQTVQVDKDLQIR 150
PT AL I D+R V + +G+ ++ I + + I +Q +V D +
Sbjct: 302 PTSALVRIANRDFRHVHI-MKGDTVIISASPIPGNESLVSRTIDSLFRQGAKVFYDRIAK 360
Query: 151 AYYAGH 156
+ GH
Sbjct: 361 VHVHGH 366
>FB|FBgn0036570 [details] [associations]
symbol:IntS9 "Integrator 9" species:7227 "Drosophila
melanogaster" [GO:0005847 "mRNA cleavage and polyadenylation
specificity factor complex" evidence=ISS] [GO:0006379 "mRNA
cleavage" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0034472 "snRNA 3'-end processing" evidence=IDA]
[GO:0032039 "integrator complex" evidence=ISS] [GO:0016180 "snRNA
processing" evidence=ISS] InterPro:IPR027074 EMBL:AE014296
GO:GO:0006378 GO:GO:0005847 GO:GO:0006379 InterPro:IPR022712
Pfam:PF10996 SMART:SM01027 CTD:55756 KO:K13146
PANTHER:PTHR11203:SF2 GeneTree:ENSGT00390000001445 OMA:PLAMKCV
GO:GO:0034472 EMBL:AY058574 RefSeq:NP_648838.3 UniGene:Dm.977
SMR:Q95TS5 IntAct:Q95TS5 MINT:MINT-1734573
EnsemblMetazoa:FBtr0075495 GeneID:39763 KEGG:dme:Dmel_CG5222
UCSC:CG5222-RA FlyBase:FBgn0036570 InParanoid:Q95TS5
OrthoDB:EOG4FJ6QV GenomeRNAi:39763 NextBio:815254 Uniprot:Q95TS5
Length = 654
Score = 92 (37.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/62 (35%), Positives = 38/62 (61%)
Query: 45 PDFSR-ISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIML 103
P+F+ + K DF+ +D I+I+++ L+ + ALP+ TE G+ G +Y T PT + L
Sbjct: 82 PEFNLPMDKMLDFSE-VDVILISNY-LNML-ALPYITENTGFKGKVYATEPTLQIGRFFL 138
Query: 104 ED 105
E+
Sbjct: 139 EE 140
Score = 68 (29.0 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGM 34
M + CL +G ++ K C ++T G RIM DCG+
Sbjct: 1 MRLYCL---SG-DLAKPCYIITFKGLRIMLDCGL 30
>TAIR|locus:2167336 [details] [associations]
symbol:emb2746 "embryo defective 2746" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] [GO:0009793 "embryo development
ending in seed dormancy" evidence=NAS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0015979 "photosynthesis" evidence=RCA] [GO:0045333 "cellular
respiration" evidence=RCA] InterPro:IPR001005 InterPro:IPR001279
InterPro:IPR004613 InterPro:IPR009057 Pfam:PF00753 SMART:SM00717
SMART:SM00849 Pfam:PF07521 EMBL:CP002688 GO:GO:0009507
GO:GO:0003677 GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016787
InterPro:IPR017877 PROSITE:PS50090 InterPro:IPR011108
PANTHER:PTHR11203:SF22 EMBL:BT004210 EMBL:AK221272 IPI:IPI00544432
RefSeq:NP_201147.2 UniGene:At.28999 ProteinModelPortal:Q84W56
SMR:Q84W56 STRING:Q84W56 PRIDE:Q84W56 EnsemblPlants:AT5G63420.1
GeneID:836461 KEGG:ath:AT5G63420 TAIR:At5g63420 InParanoid:Q84W56
OMA:GSSHAFK PhylomeDB:Q84W56 ProtClustDB:CLSN2681121
Genevestigator:Q84W56 Uniprot:Q84W56
Length = 911
Score = 116 (45.9 bits), Expect = 0.00037, P = 0.00037
Identities = 32/105 (30%), Positives = 53/105 (50%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDF----NNAID 61
L +G E+G +C++V + I+ D G+ + D+ + P +I F + I+
Sbjct: 113 LPIGGLGEIGMNCMLVGNYDRYILIDAGI--MFPDYDE-PGIQKIMPDTGFIRRWKHKIE 169
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDY 106
+VITH H DHIGALP+ N PI+ + T L L+++
Sbjct: 170 AVVITHGHEDHIGALPWVIPALDPNTPIFASSFTMELIKKRLKEH 214
>POMBASE|SPBC1709.15c [details] [associations]
symbol:cft2 "cleavage factor two Cft2/polyadenylation
factor CPSF-73 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=IDA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=ISO]
[GO:0006378 "mRNA polyadenylation" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] InterPro:IPR027075 PomBase:SPBC1709.15c
Pfam:PF07521 EMBL:CU329671 GO:GO:0006378 GenomeReviews:CU329671_GR
GO:GO:0005847 GO:GO:0006379 PIR:T39643 RefSeq:NP_595448.1
ProteinModelPortal:O74740 STRING:O74740 EnsemblFungi:SPBC1709.15c.1
GeneID:2539954 KEGG:spo:SPBC1709.15c eggNOG:COG1236 KO:K14402
OMA:ISSIATP OrthoDB:EOG4WWVSN NextBio:20801097 InterPro:IPR022712
InterPro:IPR025069 InterPro:IPR011108 PANTHER:PTHR11203:SF5
Pfam:PF10996 Pfam:PF13299 SMART:SM01027 Uniprot:O74740
Length = 797
Score = 114 (45.2 bits), Expect = 0.00055, P = 0.00055
Identities = 38/134 (28%), Positives = 63/134 (47%)
Query: 61 DCIVITHFHLDHIGALPF-FTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
D I+++H L HIG L + + + N IY T PT + + + D K +
Sbjct: 45 DLILLSHSDLAHIGGLVYAYYKYDWKNAYIYATLPTINMGRMTMLDAIK-----SNYISD 99
Query: 120 FTSDHIAECMKKVIAVDLKQ-TVQVDK--DLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
+ + +I + +Q T+ + K L I AY AGH LG ++ +++Y
Sbjct: 100 MSKADVDAVFDSIIPLRYQQPTLLLGKCSGLTITAYNAGHTLGGTLWSLIKESESVLYAV 159
Query: 177 DYNMTPDRHL-GAA 189
D+N + D+HL GAA
Sbjct: 160 DWNHSKDKHLNGAA 173
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.327 0.141 0.434 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 202 202 0.00090 111 3 11 22 0.40 32
31 0.46 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 75
No. of states in DFA: 585 (62 KB)
Total size of DFA: 168 KB (2098 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.49u 0.12s 17.61t Elapsed: 00:00:01
Total cpu time: 17.50u 0.12s 17.62t Elapsed: 00:00:01
Start: Sat May 11 02:20:08 2013 End: Sat May 11 02:20:09 2013