BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039453
(202 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255570075|ref|XP_002526000.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
gi|223534732|gb|EEF36424.1| cleavage and polyadenylation specificity factor, putative [Ricinus
communis]
Length = 963
Score = 385 bits (988), Expect = e-105, Method: Compositional matrix adjust.
Identities = 175/202 (86%), Positives = 195/202 (96%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
MAI+CLVLGAGQEVGKSCVVVTINGKRIMFDCGMHM Y+DHR+YPDFS ISKS DF++A+
Sbjct: 1 MAIECLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSGDFDSAL 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
C++ITHFHLDH+GALP+FTE+CGYNGP+YMTYPT+AL+P+MLEDYRKV+VDRRGE EQF
Sbjct: 61 HCVIITHFHLDHVGALPYFTEVCGYNGPVYMTYPTKALSPLMLEDYRKVMVDRRGEEEQF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T+DHI +C+ KVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM
Sbjct: 121 TADHIKQCLNKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
TPDRHLGAA+IDRLQLDLLITE
Sbjct: 181 TPDRHLGAAQIDRLQLDLLITE 202
>gi|449460766|ref|XP_004148116.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Cucumis sativus]
Length = 649
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 175/202 (86%), Positives = 191/202 (94%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMH+ Y DHR+YPDFSRIS S D+NN +
Sbjct: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASHDYNNVL 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
CI+ITHFHLDHIGALP+FTE+CGYNGPIYMTYPT ALAPI LEDYRKV+VDRRGE EQF
Sbjct: 61 SCIIITHFHLDHIGALPYFTEVCGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T+DHI EC+KKV+ VDLKQT+QVD+DLQIRAYYAGHVLGAAMFYAKVGD+AMVYTGDYNM
Sbjct: 121 TNDHIMECLKKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
TPDRHLGAA+IDR+QLDLLITE
Sbjct: 181 TPDRHLGAAQIDRMQLDLLITE 202
>gi|224108267|ref|XP_002314781.1| predicted protein [Populus trichocarpa]
gi|222863821|gb|EEF00952.1| predicted protein [Populus trichocarpa]
Length = 639
Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust.
Identities = 176/202 (87%), Positives = 196/202 (97%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
MAI+CLVLGAGQEVGKSCVVVTINGKRIMFDCGMHM Y+DHR+YPDFS ISKS DF++++
Sbjct: 1 MAIECLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSRDFDHSL 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
DC++ITHFHLDH+GALP+FTE+CGYNGPIYMTYPT+ALAP+MLED+RKVLVDRRGE EQF
Sbjct: 61 DCVIITHFHLDHVGALPYFTEVCGYNGPIYMTYPTKALAPLMLEDFRKVLVDRRGEEEQF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
TS HI++CM+KVIAVDLKQTVQVD DLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM
Sbjct: 121 TSLHISQCMEKVIAVDLKQTVQVDDDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
TPDRHLGAA+IDRL+LDLLITE
Sbjct: 181 TPDRHLGAAQIDRLELDLLITE 202
>gi|46360445|gb|AAS80153.1| ACT11D09.9 [Cucumis melo]
Length = 708
Score = 366 bits (939), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 167/193 (86%), Positives = 182/193 (94%)
Query: 10 AGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFH 69
AGQEVGKSCVVVTINGKRIMFDCGMH+ Y DHR+YPDFSRIS S D+NN + CI+ITHFH
Sbjct: 42 AGQEVGKSCVVVTINGKRIMFDCGMHLGYVDHRRYPDFSRISASRDYNNTLSCIIITHFH 101
Query: 70 LDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECM 129
LDHIGALP+FTEICGYNGPIYMTYPT ALAPI LEDYRKV+VDRRGE EQFT+DHI EC+
Sbjct: 102 LDHIGALPYFTEICGYNGPIYMTYPTMALAPITLEDYRKVMVDRRGEAEQFTNDHIMECL 161
Query: 130 KKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAA 189
KKV+ VDLKQT+QVD+DLQIRAYYAGHVLGAAMFYAKVGD+AMVYTGDYNMTPDRHLGAA
Sbjct: 162 KKVVPVDLKQTIQVDEDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAA 221
Query: 190 RIDRLQLDLLITE 202
+IDR+QLDLLITE
Sbjct: 222 QIDRMQLDLLITE 234
>gi|297814408|ref|XP_002875087.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
gi|297320925|gb|EFH51346.1| hypothetical protein ARALYDRAFT_322516 [Arabidopsis lyrata subsp.
lyrata]
Length = 819
Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 165/202 (81%), Positives = 189/202 (93%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
MAIDCLVLGAGQE+GKSCVVVTINGKRIMFDCGMHM +DH +YPDFS +SKS DF+NAI
Sbjct: 1 MAIDCLVLGAGQEIGKSCVVVTINGKRIMFDCGMHMGCDDHNRYPDFSLVSKSGDFDNAI 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
CI+ITHFH+DH+GALP+FTE+CGYNGPIYM+YPT+AL+P+MLEDYR+V+VDRRGE E F
Sbjct: 61 SCIIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEDELF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T+ HIA CMKKVIA+DLKQT+QVD+DLQIRAYYAGHVLGA M YAKVGD+A+VYTGDYNM
Sbjct: 121 TTAHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKVGDAAIVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
T DRHLGAA+IDRLQLDLLI+E
Sbjct: 181 TTDRHLGAAKIDRLQLDLLISE 202
>gi|356502382|ref|XP_003519998.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Glycine max]
Length = 516
Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 168/202 (83%), Positives = 188/202 (93%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
MAI+ LVLGAGQEVGKSCVVVTIN KRIMFDCGMHM Y DHR+YPDF+RIS S D N+A+
Sbjct: 1 MAIETLVLGAGQEVGKSCVVVTINAKRIMFDCGMHMGYLDHRRYPDFTRISPSRDLNSAL 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
CI+ITHFHLDH+GAL +FTE+ GYNGP+YMTYPT+ALAP+MLEDYRKV+VDRRGE E F
Sbjct: 61 SCIIITHFHLDHVGALAYFTEVLGYNGPVYMTYPTKALAPLMLEDYRKVMVDRRGEEELF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+SD IAECMKKVIAVDL+QTVQV+KDLQIRAYYAGHV+GAAMFYAKVGD+ MVYTGDYNM
Sbjct: 121 SSDQIAECMKKVIAVDLRQTVQVEKDLQIRAYYAGHVIGAAMFYAKVGDAEMVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
TPDRHLGAA+IDRL+LDLLITE
Sbjct: 181 TPDRHLGAAQIDRLRLDLLITE 202
>gi|27372065|gb|AAN87883.1| FEG protein [Arabidopsis thaliana]
Length = 613
Score = 362 bits (928), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 163/202 (80%), Positives = 189/202 (93%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
MAIDCLVLGAGQE+GKSCVVVTINGK+IMFDCGMHM +DH +YP+FS ISKS DF+NAI
Sbjct: 1 MAIDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAI 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
CI+ITHFH+DH+GALP+FTE+CGYNGPIYM+YPT+AL+P+MLEDYR+V+VDRRGE E F
Sbjct: 61 SCIIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T+ HIA CMKKVIA+DLKQT+QVD+DLQIRAYYAGHVLGA M YAK+GD+A+VYTGDYNM
Sbjct: 121 TTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
T DRHLGAA+IDRLQLDLLI+E
Sbjct: 181 TTDRHLGAAKIDRLQLDLLISE 202
>gi|4220489|gb|AAD12712.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
Length = 837
Score = 361 bits (927), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 163/202 (80%), Positives = 189/202 (93%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
MAIDCLVLGAGQE+GKSCVVVTINGK+IMFDCGMHM +DH +YP+FS ISKS DF+NAI
Sbjct: 1 MAIDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAI 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
CI+ITHFH+DH+GALP+FTE+CGYNGPIYM+YPT+AL+P+MLEDYR+V+VDRRGE E F
Sbjct: 61 SCIIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T+ HIA CMKKVIA+DLKQT+QVD+DLQIRAYYAGHVLGA M YAK+GD+A+VYTGDYNM
Sbjct: 121 TTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
T DRHLGAA+IDRLQLDLLI+E
Sbjct: 181 TTDRHLGAAKIDRLQLDLLISE 202
>gi|30677952|ref|NP_178282.2| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
gi|332278175|sp|Q8GUU3.2|CPS3B_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3-II; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit II; Short=AtCPSF73-II;
Short=CPSF 73 kDa subunit II; AltName: Full=Protein
EMBRYO SAC DEVELOPMENT ARREST 26
gi|62320470|dbj|BAD94982.1| putative cleavage and polyadenylation specifity factor [Arabidopsis
thaliana]
gi|330250395|gb|AEC05489.1| cleavage and polyadenylation specificity factor subunit 3-II
[Arabidopsis thaliana]
Length = 613
Score = 361 bits (927), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 163/202 (80%), Positives = 189/202 (93%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
MAIDCLVLGAGQE+GKSCVVVTINGK+IMFDCGMHM +DH +YP+FS ISKS DF+NAI
Sbjct: 1 MAIDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAI 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
CI+ITHFH+DH+GALP+FTE+CGYNGPIYM+YPT+AL+P+MLEDYR+V+VDRRGE E F
Sbjct: 61 SCIIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T+ HIA CMKKVIA+DLKQT+QVD+DLQIRAYYAGHVLGA M YAK+GD+A+VYTGDYNM
Sbjct: 121 TTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
T DRHLGAA+IDRLQLDLLI+E
Sbjct: 181 TTDRHLGAAKIDRLQLDLLISE 202
>gi|388507878|gb|AFK42005.1| unknown [Medicago truncatula]
Length = 534
Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 164/202 (81%), Positives = 187/202 (92%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
M I+ LVLGAGQEVGKSCV+V INGKRIMFDCGM M + DH +YPDF +IS S +FN+A+
Sbjct: 1 MTIEVLVLGAGQEVGKSCVIVKINGKRIMFDCGMRMRHTDHSRYPDFKKISDSGNFNDAL 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
DCI+ITHFHLDH+GAL +FTE+CGY+GP+YMTYP +AL+P+MLEDYRKV+VDRRGE EQF
Sbjct: 61 DCIIITHFHLDHVGALAYFTEVCGYSGPVYMTYPIKALSPLMLEDYRKVMVDRRGEEEQF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
TSDHIAECMKKVIAVDLKQTVQVD+DLQIRAYYAGHV+GAAMFY KVGD+ MVYTGDYNM
Sbjct: 121 TSDHIAECMKKVIAVDLKQTVQVDEDLQIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
TPDRHLGAA+IDRL+LDLLITE
Sbjct: 181 TPDRHLGAAQIDRLRLDLLITE 202
>gi|217075847|gb|ACJ86283.1| unknown [Medicago truncatula]
Length = 230
Score = 359 bits (921), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 164/202 (81%), Positives = 187/202 (92%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
M I+ LVLGAGQEVGKSCV+V INGKRIMFDCGM M + DH +YPDF +IS S +FN+A+
Sbjct: 1 MTIEVLVLGAGQEVGKSCVIVKINGKRIMFDCGMRMRHTDHSRYPDFKKISDSGNFNDAL 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
DCI+ITHFHLDH+GAL +FTE+CGY+GP+YMTYP +AL+P+MLEDYRKV+VDRRGE EQF
Sbjct: 61 DCIIITHFHLDHVGALAYFTEVCGYSGPVYMTYPIKALSPLMLEDYRKVMVDRRGEEEQF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
TSDHIAECMKKVIAVDLKQTVQVD+DLQIRAYYAGHV+GAAMFY KVGD+ MVYTGDYNM
Sbjct: 121 TSDHIAECMKKVIAVDLKQTVQVDEDLQIRAYYAGHVIGAAMFYVKVGDAEMVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
TPDRHLGAA+IDRL+LDLLITE
Sbjct: 181 TPDRHLGAAQIDRLRLDLLITE 202
>gi|357158307|ref|XP_003578085.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-II-like [Brachypodium distachyon]
Length = 553
Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 160/206 (77%), Positives = 186/206 (90%), Gaps = 4/206 (1%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRI----SKSCDF 56
MAI+CLVLGAGQEVGKSCVVVTI GKRIMFDCGMHM Y+D +YPDF+RI ++ DF
Sbjct: 1 MAIECLVLGAGQEVGKSCVVVTIGGKRIMFDCGMHMGYHDCNRYPDFARILAAAPETTDF 60
Query: 57 NNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGE 116
+AI C++ITHFHLDHIGALP+FTE+CGY+GPIYMTYPT+ALAP+MLEDYRKV+VD+RGE
Sbjct: 61 TSAISCVIITHFHLDHIGALPYFTEVCGYHGPIYMTYPTKALAPLMLEDYRKVMVDQRGE 120
Query: 117 VEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
EQ++ + I CMKKVI VDLKQT+QV++DL IRAYYAGHVLGAAM YAKVGD+AMVYTG
Sbjct: 121 EEQYSYEDILRCMKKVIPVDLKQTIQVNRDLVIRAYYAGHVLGAAMVYAKVGDAAMVYTG 180
Query: 177 DYNMTPDRHLGAARIDRLQLDLLITE 202
DYNMTPDRHLGAA+I+RL+LDLLITE
Sbjct: 181 DYNMTPDRHLGAAQIERLKLDLLITE 206
>gi|242053629|ref|XP_002455960.1| hypothetical protein SORBIDRAFT_03g028040 [Sorghum bicolor]
gi|241927935|gb|EES01080.1| hypothetical protein SORBIDRAFT_03g028040 [Sorghum bicolor]
Length = 558
Score = 342 bits (878), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 161/205 (78%), Positives = 181/205 (88%), Gaps = 3/205 (1%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSC---DFN 57
MAI+CLVLGAGQEVGKSCVVVTI GKR+MFDCGMHM Y+DHR YPDF+R + DF
Sbjct: 1 MAIECLVLGAGQEVGKSCVVVTIGGKRVMFDCGMHMGYHDHRHYPDFARALAAWGAPDFT 60
Query: 58 NAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEV 117
AI C+VITHFHLDHIGALP+FTEICGY+GPIYMTYPT+ALAP MLEDYRKV +D+RGE
Sbjct: 61 TAISCVVITHFHLDHIGALPYFTEICGYHGPIYMTYPTKALAPFMLEDYRKVTMDQRGEE 120
Query: 118 EQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
EQ++ + I CMKKVI +DLKQT+QVDKDL IRAYYAGHV+GAAM YAKVGD+AMVYTGD
Sbjct: 121 EQYSYEDILRCMKKVIPMDLKQTIQVDKDLVIRAYYAGHVIGAAMIYAKVGDAAMVYTGD 180
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
YNMTPDRHLGAA+ID L+LDLLITE
Sbjct: 181 YNMTPDRHLGAAQIDHLKLDLLITE 205
>gi|115479027|ref|NP_001063107.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|50252615|dbj|BAD28786.1| putative FEG protein [Oryza sativa Japonica Group]
gi|113631340|dbj|BAF25021.1| Os09g0397900 [Oryza sativa Japonica Group]
gi|218202115|gb|EEC84542.1| hypothetical protein OsI_31281 [Oryza sativa Indica Group]
gi|222641522|gb|EEE69654.1| hypothetical protein OsJ_29268 [Oryza sativa Japonica Group]
Length = 559
Score = 334 bits (856), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 156/205 (76%), Positives = 181/205 (88%), Gaps = 3/205 (1%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTING-KRIMFDCGMHMAYNDHRQYPDFSRI--SKSCDFN 57
MAI+CLVLGAGQEVGKSCVVVT G KR+MFDCGMHM + D R+YPDF R+ + D+
Sbjct: 1 MAIECLVLGAGQEVGKSCVVVTFGGGKRVMFDCGMHMGHRDSRRYPDFDRLLADGAADYT 60
Query: 58 NAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEV 117
AI C+VITHFHLDHIGALP+FTE+CGY+GP+YMTYPT+ALAP+MLEDYRKV+VD RGE
Sbjct: 61 AAISCVVITHFHLDHIGALPYFTEVCGYHGPVYMTYPTKALAPLMLEDYRKVMVDHRGEE 120
Query: 118 EQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
EQ++ + I CM+KVI +DLKQT+QVDKDL IRAYYAGHVLGAAM YAKVGD+A+VYTGD
Sbjct: 121 EQYSYEDILRCMRKVIPLDLKQTIQVDKDLSIRAYYAGHVLGAAMIYAKVGDAAIVYTGD 180
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
YNMTPDRHLGAA+IDRL+LDLLITE
Sbjct: 181 YNMTPDRHLGAAQIDRLKLDLLITE 205
>gi|414881435|tpg|DAA58566.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 558
Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 156/205 (76%), Positives = 179/205 (87%), Gaps = 3/205 (1%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSC---DFN 57
MAI+CLVLGAGQEVGKSCVVVTI GKR+MFDCGMHM Y+D R YPDF+R + DF
Sbjct: 1 MAIECLVLGAGQEVGKSCVVVTIGGKRVMFDCGMHMGYHDDRHYPDFARALAAWGAPDFT 60
Query: 58 NAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEV 117
AI C+VITHFH+DHIGALP+FTE+CGY+GPIYMTYPT+ALAP MLEDYRKV + +RGE
Sbjct: 61 TAISCVVITHFHMDHIGALPYFTEVCGYHGPIYMTYPTKALAPFMLEDYRKVTMGQRGEE 120
Query: 118 EQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
+Q++ + I CMKKV +DLKQTVQVDKDL IRAYYAGHV+GAAM YAKVGD+AMVYTGD
Sbjct: 121 KQYSYEDILRCMKKVTPMDLKQTVQVDKDLVIRAYYAGHVIGAAMIYAKVGDAAMVYTGD 180
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
YNMTPDRHLGAA+IDRL+LD+LITE
Sbjct: 181 YNMTPDRHLGAAQIDRLKLDVLITE 205
>gi|302793925|ref|XP_002978727.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
gi|300153536|gb|EFJ20174.1| hypothetical protein SELMODRAFT_109555 [Selaginella moellendorffii]
Length = 522
Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 146/194 (75%), Positives = 176/194 (90%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQ+VGKSCV+V++ GK+IMFDCGMHM Y D R++PDFS+ISK+ DF + IDC+++THF
Sbjct: 6 GAGQDVGKSCVIVSMGGKKIMFDCGMHMGYQDERRFPDFSQISKTGDFTHEIDCVIVTHF 65
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH+GALP+FTE+CGY GP+YMTYPT+ALAPIMLEDYRK++VDRRGE EQF++ HI +C
Sbjct: 66 HLDHVGALPYFTEVCGYEGPVYMTYPTKALAPIMLEDYRKIMVDRRGEEEQFSTLHIQQC 125
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
MKKVIAVDL+QT++V KDL RAYYAGHVLGAAMFY K G+S +VYTGDYNMTPDRHLGA
Sbjct: 126 MKKVIAVDLRQTIRVSKDLAFRAYYAGHVLGAAMFYVKAGNSTVVYTGDYNMTPDRHLGA 185
Query: 189 ARIDRLQLDLLITE 202
A+IDRL+ DLLITE
Sbjct: 186 AQIDRLKPDLLITE 199
>gi|302787435|ref|XP_002975487.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
gi|300156488|gb|EFJ23116.1| hypothetical protein SELMODRAFT_52099 [Selaginella moellendorffii]
Length = 517
Score = 332 bits (850), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 145/194 (74%), Positives = 176/194 (90%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQ+VGKSCV+V++ GK+IMFDCGMHM Y D R++PDFS+ISK+ DF + IDC+++THF
Sbjct: 1 GAGQDVGKSCVIVSMGGKKIMFDCGMHMGYQDERRFPDFSQISKTGDFTHEIDCVIVTHF 60
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH+GALP+FTE+CGY GP+YMTYPT+ALAPIMLEDYRK++VDRRGE EQF++ HI +C
Sbjct: 61 HLDHVGALPYFTEVCGYEGPVYMTYPTKALAPIMLEDYRKIMVDRRGEEEQFSTLHIQQC 120
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
MKKVIAVDL+QT++V +DL RAYYAGHVLGAAMFY K G+S +VYTGDYNMTPDRHLGA
Sbjct: 121 MKKVIAVDLRQTIRVSRDLAFRAYYAGHVLGAAMFYVKAGNSTVVYTGDYNMTPDRHLGA 180
Query: 189 ARIDRLQLDLLITE 202
A+IDRL+ DLLITE
Sbjct: 181 AQIDRLKPDLLITE 194
>gi|414881433|tpg|DAA58564.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 400
Score = 332 bits (850), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 156/205 (76%), Positives = 179/205 (87%), Gaps = 3/205 (1%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSC---DFN 57
MAI+CLVLGAGQEVGKSCVVVTI GKR+MFDCGMHM Y+D R YPDF+R + DF
Sbjct: 1 MAIECLVLGAGQEVGKSCVVVTIGGKRVMFDCGMHMGYHDDRHYPDFARALAAWGAPDFT 60
Query: 58 NAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEV 117
AI C+VITHFH+DHIGALP+FTE+CGY+GPIYMTYPT+ALAP MLEDYRKV + +RGE
Sbjct: 61 TAISCVVITHFHMDHIGALPYFTEVCGYHGPIYMTYPTKALAPFMLEDYRKVTMGQRGEE 120
Query: 118 EQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
+Q++ + I CMKKV +DLKQTVQVDKDL IRAYYAGHV+GAAM YAKVGD+AMVYTGD
Sbjct: 121 KQYSYEDILRCMKKVTPMDLKQTVQVDKDLVIRAYYAGHVIGAAMIYAKVGDAAMVYTGD 180
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
YNMTPDRHLGAA+IDRL+LD+LITE
Sbjct: 181 YNMTPDRHLGAAQIDRLKLDVLITE 205
>gi|414881434|tpg|DAA58565.1| TPA: putative RNA-metabolising metallo-beta-lactamase [Zea mays]
Length = 400
Score = 331 bits (849), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 156/205 (76%), Positives = 179/205 (87%), Gaps = 3/205 (1%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSC---DFN 57
MAI+CLVLGAGQEVGKSCVVVTI GKR+MFDCGMHM Y+D R YPDF+R + DF
Sbjct: 1 MAIECLVLGAGQEVGKSCVVVTIGGKRVMFDCGMHMGYHDDRHYPDFARALAAWGAPDFT 60
Query: 58 NAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEV 117
AI C+VITHFH+DHIGALP+FTE+CGY+GPIYMTYPT+ALAP MLEDYRKV + +RGE
Sbjct: 61 TAISCVVITHFHMDHIGALPYFTEVCGYHGPIYMTYPTKALAPFMLEDYRKVTMGQRGEE 120
Query: 118 EQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
+Q++ + I CMKKV +DLKQTVQVDKDL IRAYYAGHV+GAAM YAKVGD+AMVYTGD
Sbjct: 121 KQYSYEDILRCMKKVTPMDLKQTVQVDKDLVIRAYYAGHVIGAAMIYAKVGDAAMVYTGD 180
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
YNMTPDRHLGAA+IDRL+LD+LITE
Sbjct: 181 YNMTPDRHLGAAQIDRLKLDVLITE 205
>gi|168034228|ref|XP_001769615.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679157|gb|EDQ65608.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 563
Score = 325 bits (834), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 147/196 (75%), Positives = 172/196 (87%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V GAGQ+VGKSCV+VTI GK IMFDCGMHM Y D R+YPDFS ISKS DF + IDC+++T
Sbjct: 1 VAGAGQDVGKSCVIVTIGGKNIMFDCGMHMGYQDERRYPDFSFISKSGDFTHVIDCVIVT 60
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
HFHLDHIGALP+FTE+CGY+GPIYMTYPT+ALAP+MLEDYRKV+V+R+GE EQF+ I
Sbjct: 61 HFHLDHIGALPYFTEVCGYDGPIYMTYPTKALAPLMLEDYRKVMVERKGEQEQFSVLQIQ 120
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+CMKKV AVDL+QT++V DL+ RAYYAGHVLGAAMF+ K GD +VYTGDYNMTPDRHL
Sbjct: 121 KCMKKVTAVDLRQTIKVGADLEFRAYYAGHVLGAAMFWVKAGDDTVVYTGDYNMTPDRHL 180
Query: 187 GAARIDRLQLDLLITE 202
GAA+IDRL+ DLLITE
Sbjct: 181 GAAQIDRLEPDLLITE 196
>gi|66816359|ref|XP_642189.1| integrator complex subunit 11 [Dictyostelium discoideum AX4]
gi|74856745|sp|Q54YL3.1|INT11_DICDI RecName: Full=Integrator complex subunit 11 homolog
gi|60470287|gb|EAL68267.1| integrator complex subunit 11 [Dictyostelium discoideum AX4]
Length = 744
Score = 315 bits (806), Expect = 9e-84, Method: Composition-based stats.
Identities = 137/202 (67%), Positives = 170/202 (84%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
M I + LGAGQ+VG+SCV+VTI K IMFDCGMHM ND R++PDFS ISK+ F I
Sbjct: 1 MTIKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVI 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
DC++ITHFHLDH GALPFFTE+CGY+GPIYMT PT+A+ PI+LEDYRK+ V+++GE F
Sbjct: 61 DCVIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T+ I +CMKKVI V+L QT++VD++L I+AYYAGHVLGAAMFYAKVGD ++VYTGDYNM
Sbjct: 121 TAQMIKDCMKKVIPVNLHQTIKVDEELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
TPDRHLG+A ID+++ D+LITE
Sbjct: 181 TPDRHLGSAWIDQVKPDVLITE 202
>gi|440801023|gb|ELR22048.1| cleavage and polyadenylation specific factor 3like, putative
[Acanthamoeba castellanii str. Neff]
Length = 657
Score = 313 bits (801), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 138/202 (68%), Positives = 175/202 (86%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
M I LGAGQ+VG+SC++V++ GK IMFDCGMHM Y+D R++PDF+ ISKS +F NAI
Sbjct: 1 MDIKVTPLGAGQDVGRSCILVSLGGKNIMFDCGMHMGYDDARRFPDFNFISKSGNFTNAI 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
DCI+ITHFHLDH GALP+FTE+CGY+GPIYMT+PT+A+ PI+LEDYRK+ V+R+GE F
Sbjct: 61 DCIIITHFHLDHCGALPYFTEMCGYDGPIYMTHPTKAICPILLEDYRKITVERKGETNFF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
TS I +CMKKV+ +++ QTVQVD++L+IRAYYAGHVLGAAMFY +VGD ++VYTGDYNM
Sbjct: 121 TSQMIKDCMKKVVGLNVHQTVQVDEELEIRAYYAGHVLGAAMFYVRVGDQSVVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
TPDRHLGAA I++L+ D+LITE
Sbjct: 181 TPDRHLGAAWIEKLRPDVLITE 202
>gi|328873132|gb|EGG21499.1| integrator complex subunit 11 [Dictyostelium fasciculatum]
Length = 645
Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 135/202 (66%), Positives = 168/202 (83%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
M I + LGAGQ+VG+SCV+V+I K IMFDCGMHM Y+D R++PDFS ISK+ F +
Sbjct: 1 MGIKVVPLGAGQDVGRSCVIVSIGNKNIMFDCGMHMGYHDERRFPDFSFISKTKQFTKTL 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
DCI+ITHFHLDH GALP+FTE+CGY+GPIYMT PT+A+ PI+LEDYRK+ VDR+GE F
Sbjct: 61 DCIIITHFHLDHCGALPYFTEMCGYDGPIYMTLPTKAIVPILLEDYRKISVDRKGETNFF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T I +CMKKVI + L QT++VD +L I+AYYAGHVLGAAMFYAKVG+ ++VYTGDYNM
Sbjct: 121 TPQMIKDCMKKVIPIALHQTIKVDDELSIKAYYAGHVLGAAMFYAKVGEESVVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
TPDRHLG+A ID+++ +LLITE
Sbjct: 181 TPDRHLGSAWIDQVRPNLLITE 202
>gi|330796066|ref|XP_003286090.1| hypothetical protein DICPUDRAFT_30371 [Dictyostelium purpureum]
gi|325083909|gb|EGC37349.1| hypothetical protein DICPUDRAFT_30371 [Dictyostelium purpureum]
Length = 468
Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 136/202 (67%), Positives = 168/202 (83%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
M I + LGAGQ+VG+SCV+VTI K IMFDCGMHM Y D R++PDFS ISK+ F I
Sbjct: 1 MTIKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGYYDERRFPDFSYISKNKQFTKII 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
DC++ITHFHLDH GALP+FTE+ GY+GPIYMT PT+A+ PI+LEDYRK+ VDR+G+ F
Sbjct: 61 DCVIITHFHLDHCGALPYFTEMVGYDGPIYMTLPTKAITPILLEDYRKITVDRKGDTNFF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T I +CMKKVI +DL QT++VD++L I+AYYAGHVLGAAMFYAKVGD ++VYTGDYNM
Sbjct: 121 TPQMIKDCMKKVIPIDLHQTIKVDEELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
TPDRHLG+A ID+++ D+LITE
Sbjct: 181 TPDRHLGSAWIDQVKPDVLITE 202
>gi|147826468|emb|CAN66105.1| hypothetical protein VITISV_012700 [Vitis vinifera]
Length = 344
Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 163/265 (61%), Positives = 178/265 (67%), Gaps = 63/265 (23%)
Query: 1 MAIDCLVLG------------------------AGQEVGKSCVVVTINGKRIMFDCGMHM 36
MAI+CLVLG AGQEVGKSC VVTINGKRIMFDCGMHM
Sbjct: 1 MAIECLVLGMXIISIIVFRFLYLYLRSVLARSGAGQEVGKSCAVVTINGKRIMFDCGMHM 60
Query: 37 AYNDHRQYPDFSRISKSCDFNNAIDCIVITHF-------------------HLDHIG-AL 76
Y DHR++PDFS ISKS DFN AIDCIVITHF +G A
Sbjct: 61 GYLDHRRFPDFSLISKSADFNTAIDCIVITHFVYVNFNCAVTWIMLGLFLTSRKFVGIAD 120
Query: 77 PF-------FTEICGYN------------GPIYMTYPTRALAPIMLEDYRKVLVDRRGEV 117
PF E C + G + YPT+AL+P+MLEDYRKV+VDRRGE
Sbjct: 121 PFNMNGKSGLIEFCAWTINFVLSLEIYTLGSFCLQYPTKALSPLMLEDYRKVMVDRRGEQ 180
Query: 118 EQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
E F++D I +CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGD+AMVYTGD
Sbjct: 181 ELFSNDDIMKCMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGD 240
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
YNMTPDRHLGAA+IDRLQLDLLITE
Sbjct: 241 YNMTPDRHLGAAQIDRLQLDLLITE 265
>gi|328766828|gb|EGF76880.1| hypothetical protein BATDEDRAFT_14507, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 475
Score = 295 bits (754), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 137/205 (66%), Positives = 170/205 (82%), Gaps = 5/205 (2%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I + LGAGQ+VG+SCV+VT+ K IMFDCGMHM Y+DHR++PDF+ ISKS D+ + IDC
Sbjct: 8 IRVIPLGAGQDVGRSCVLVTMGSKNIMFDCGMHMGYSDHRRFPDFTYISKSGDYTSMIDC 67
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+FTEICGY+GPIYMT PT+A+API+LED RKV+V+R+GE + FTS
Sbjct: 68 VIISHFHLDHCGALPYFTEICGYDGPIYMTGPTKAIAPILLEDMRKVVVERKGETDFFTS 127
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGD-----SAMVYTGD 177
I CM+KVIAV+L +TVQVD L+IR YYAGHVLGAAMFY +V D ++VYTGD
Sbjct: 128 VDIKNCMQKVIAVNLMETVQVDAQLEIRPYYAGHVLGAAMFYVRVTDGYGVTQSVVYTGD 187
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
YNMTPDRHLGAA+ID + DL+ITE
Sbjct: 188 YNMTPDRHLGAAQIDGCEPDLIITE 212
>gi|74198351|dbj|BAE39661.1| unnamed protein product [Mus musculus]
Length = 600
Score = 289 bits (740), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 128/195 (65%), Positives = 165/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I+GK +M DCGMHM YND R++PDFS I++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|76559911|ref|NP_001029064.1| integrator complex subunit 11 [Rattus norvegicus]
gi|119371245|sp|Q3MHC2.1|INT11_RAT RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|75867808|gb|AAI05304.1| Cleavage and polyadenylation specific factor 3-like [Rattus
norvegicus]
Length = 600
Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 128/195 (65%), Positives = 165/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I+GK +M DCGMHM YND R++PDFS I++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|21312614|ref|NP_082296.1| integrator complex subunit 11 [Mus musculus]
gi|81904239|sp|Q9CWS4.1|INT11_MOUSE RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|12845859|dbj|BAB26928.1| unnamed protein product [Mus musculus]
gi|26355309|dbj|BAC41135.1| unnamed protein product [Mus musculus]
gi|74192536|dbj|BAE43054.1| unnamed protein product [Mus musculus]
gi|74219576|dbj|BAE29558.1| unnamed protein product [Mus musculus]
gi|148683102|gb|EDL15049.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_b
[Mus musculus]
Length = 600
Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 128/195 (65%), Positives = 165/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I+GK +M DCGMHM YND R++PDFS I++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|354495797|ref|XP_003510015.1| PREDICTED: integrator complex subunit 11-like [Cricetulus griseus]
gi|344251677|gb|EGW07781.1| Integrator complex subunit 11 [Cricetulus griseus]
Length = 600
Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 128/195 (65%), Positives = 165/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I+GK +M DCGMHM YND R++PDFS I++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|241245173|ref|XP_002402434.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
gi|215496345|gb|EEC05985.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
Length = 596
Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 165/200 (82%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++++I GK IM DCGMHM YND R++PDFS +++ N+ +DC
Sbjct: 4 ISVTPLGAGQDVGRSCILLSIGGKNIMLDCGMHMGYNDERRFPDFSYVTQEGPLNDHLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+ TE+ GY GP+YMT+PT+A+ PI+LED+RK+ VDR+GE FTS
Sbjct: 64 LIISHFHLDHCGALPYMTEMVGYAGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKV+AV+L QTVQVD +L+I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVVAVNLHQTVQVDDELEIKAYYAGHVLGAAMFHIRVGSQSVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + DLLITE
Sbjct: 184 DRHLGAAWIDKCRPDLLITE 203
>gi|149024842|gb|EDL81339.1| similar to RIKEN cDNA 2410006F12 [Rattus norvegicus]
Length = 601
Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 128/195 (65%), Positives = 165/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I+GK +M DCGMHM YND R++PDFS I++S + +DC++I+H
Sbjct: 10 LGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISH 69
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 70 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 129
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 130 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 189
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 190 AAWIDKCRPNLLITE 204
>gi|74220481|dbj|BAE31460.1| unnamed protein product [Mus musculus]
Length = 600
Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 128/195 (65%), Positives = 165/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I+GK +M DCGMHM YND R++PDFS I++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|320170221|gb|EFW47120.1| integrator complex subunit 11 [Capsaspora owczarzaki ATCC 30864]
Length = 661
Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 126/202 (62%), Positives = 168/202 (83%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
M I LGAGQ+VG+SC++V+I GK IMFDCGMHM YND R++PDF+ I ++ + + I
Sbjct: 1 MVIRVRPLGAGQDVGRSCLLVSIGGKNIMFDCGMHMGYNDARRFPDFASIKRTGPYTDVI 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
DC++++HFHLDH GA+ F+E+CGY+GPIYMT+PT+A+ PI+LEDYRK+ V+R+GE F
Sbjct: 61 DCVIVSHFHLDHCGAIVHFSEVCGYDGPIYMTHPTKAICPILLEDYRKLTVERKGETNFF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
TS +I CMKKVIAV+L ++V+VD +++I+AYYAGHVLGAAMF+ +VG ++VYTGD+NM
Sbjct: 121 TSANIKACMKKVIAVNLHESVRVDDEIEIKAYYAGHVLGAAMFHVRVGSESVVYTGDFNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
TPDRHLGAA IDR + DLLITE
Sbjct: 181 TPDRHLGAAWIDRCRPDLLITE 202
>gi|449268484|gb|EMC79348.1| Integrator complex subunit 11 [Columba livia]
Length = 600
Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 166/200 (83%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V+I GK +M DCGMHM YND R++PDFS I+++ + +DC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKV+AV L QTVQVD++L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + DLLITE
Sbjct: 184 DRHLGAAWIDKCRPDLLITE 203
>gi|61098197|ref|NP_001012854.1| integrator complex subunit 11 [Gallus gallus]
gi|75571225|sp|Q5ZIH0.1|INT11_CHICK RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|53135966|emb|CAG32473.1| hypothetical protein RCJMB04_26e19 [Gallus gallus]
Length = 600
Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 166/200 (83%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V+I GK +M DCGMHM YND R++PDFS I+++ + +DC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKV+AV L QTVQVD++L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + DLLITE
Sbjct: 184 DRHLGAAWIDKCRPDLLITE 203
>gi|326932364|ref|XP_003212289.1| PREDICTED: integrator complex subunit 11-like [Meleagris gallopavo]
Length = 600
Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 166/200 (83%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V+I GK +M DCGMHM YND R++PDFS I+++ + +DC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKV+AV L QTVQVD++L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + DLLITE
Sbjct: 184 DRHLGAAWIDKCRPDLLITE 203
>gi|442751667|gb|JAA67993.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit [Ixodes ricinus]
Length = 596
Score = 288 bits (737), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 164/200 (82%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++++I GK IM DCGMHM YND R++PDFS +++ N+ +DC
Sbjct: 4 ISVTPLGAGQDVGRSCILLSIGGKNIMLDCGMHMGYNDERRFPDFSYVTQEGPLNDHLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I HFHLDH GALP+ TE+ GY GP+YMT+PT+A+ PI+LED+RK+ VDR+GE FTS
Sbjct: 64 LIIGHFHLDHCGALPYMTEMVGYAGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKV+AV+L QTVQVD +L+I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVVAVNLHQTVQVDDELEIKAYYAGHVLGAAMFHIRVGSQSVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + DLLITE
Sbjct: 184 DRHLGAAWIDKCRPDLLITE 203
>gi|334321967|ref|XP_001364674.2| PREDICTED: integrator complex subunit 11-like [Monodelphis
domestica]
Length = 600
Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 128/198 (64%), Positives = 164/198 (82%)
Query: 5 CLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIV 64
LV GAGQ+VG+SC++V+I GK +M DCGMHM YND R++PDFS I+++ + +DC++
Sbjct: 6 ALVAGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDCVI 65
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
I+HFHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS
Sbjct: 66 ISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTSQM 125
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
I +CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG + VYTGDYNMTPDR
Sbjct: 126 IKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESAVYTGDYNMTPDR 185
Query: 185 HLGAARIDRLQLDLLITE 202
HLGAA ID+ + +LLITE
Sbjct: 186 HLGAAWIDKCRPNLLITE 203
>gi|417403209|gb|JAA48422.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Desmodus rotundus]
Length = 604
Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 127/195 (65%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD++LQI+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDEELQIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + LLITE
Sbjct: 189 AAWIDKCRPTLLITE 203
>gi|321457255|gb|EFX68345.1| hypothetical protein DAPPUDRAFT_218302 [Daphnia pulex]
Length = 597
Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 165/200 (82%), Gaps = 1/200 (0%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC+++ + GK IM DCGMHM YND R++PDFS I+ + ++DC
Sbjct: 4 IKVTPLGAGQDVGRSCILLQMGGKNIMLDCGMHMGYNDERRFPDFSYIADG-NLTESLDC 62
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALPF TE+ GYNGPIYMT+PT+A+API+LED RKV V+R+GE FTS
Sbjct: 63 VIISHFHLDHCGALPFMTEMVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGETNFFTS 122
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
HI +CMKKVIAV L QTVQVD +++I+AYYAGHVLGAAMF+ KVG+ ++VYTGDYNMTP
Sbjct: 123 AHIKDCMKKVIAVTLHQTVQVDSEIEIKAYYAGHVLGAAMFHVKVGNQSVVYTGDYNMTP 182
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + ++LI+E
Sbjct: 183 DRHLGAAWIDKCRPNILISE 202
>gi|321468347|gb|EFX79332.1| hypothetical protein DAPPUDRAFT_304859 [Daphnia pulex]
Length = 597
Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 165/200 (82%), Gaps = 1/200 (0%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC+++ + GK IM DCGMHM YND R++PDFS I+ + ++DC
Sbjct: 4 IKVTPLGAGQDVGRSCILLQMGGKNIMLDCGMHMGYNDERRFPDFSYIADG-NLTESLDC 62
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALPF TE+ GYNGPIYMT+PT+A+API+LED RKV V+R+GE FTS
Sbjct: 63 VIISHFHLDHCGALPFMTEMVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGETNFFTS 122
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
HI +CMKKVIAV L QTVQVD +++I+AYYAGHVLGAAMF+ KVG+ ++VYTGDYNMTP
Sbjct: 123 AHIKDCMKKVIAVTLHQTVQVDSEIEIKAYYAGHVLGAAMFHVKVGNQSVVYTGDYNMTP 182
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + ++LI+E
Sbjct: 183 DRHLGAAWIDKCRPNILISE 202
>gi|417403203|gb|JAA48419.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Desmodus rotundus]
Length = 603
Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 127/195 (65%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD++LQI+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDEELQIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + LLITE
Sbjct: 189 AAWIDKCRPTLLITE 203
>gi|196007172|ref|XP_002113452.1| hypothetical protein TRIADDRAFT_57642 [Trichoplax adhaerens]
gi|190583856|gb|EDV23926.1| hypothetical protein TRIADDRAFT_57642 [Trichoplax adhaerens]
Length = 596
Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 165/200 (82%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I + LGAGQ+VG+SC++VTI K IMFDCGMHM YND R++PDF+ I++S +DC
Sbjct: 4 IKVVPLGAGQDVGRSCILVTIGCKNIMFDCGMHMGYNDDRRFPDFTYITRSGSLTQFLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+F+E+C Y+GPIYMT+PT+A+ PI+LEDYRK+ VDR+GE FTS
Sbjct: 64 VIISHFHLDHCGALPYFSEMCKYDGPIYMTHPTKAICPILLEDYRKITVDRKGEKNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKV A++L QTV+VD DL+I+AYYAGHVLGAAMF KVG +++YTGDYNMTP
Sbjct: 124 QMIKDCMKKVKAINLHQTVKVDDDLEIKAYYAGHVLGAAMFLVKVGCESVLYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + +LLITE
Sbjct: 184 DRHLGAAWIDKCRPNLLITE 203
>gi|301788922|ref|XP_002929872.1| PREDICTED: integrator complex subunit 11-like [Ailuropoda
melanoleuca]
Length = 600
Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 127/195 (65%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA IDR + +LLITE
Sbjct: 189 AAWIDRCRPNLLITE 203
>gi|224079882|ref|XP_002197797.1| PREDICTED: integrator complex subunit 11 [Taeniopygia guttata]
Length = 600
Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 128/200 (64%), Positives = 166/200 (83%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V+I GK +M DCGMHM YND R++PDFS I+++ + +DC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+F+E+ GY+GPIYM++PT+A+ PI+LEDYRK+ VD++GE FTS
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMSHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKV+AV L QTVQVD++L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + DLLITE
Sbjct: 184 DRHLGAAWIDKCRPDLLITE 203
>gi|301618510|ref|XP_002938656.1| PREDICTED: integrator complex subunit 11 isoform 1 [Xenopus
(Silurana) tropicalis]
gi|301618512|ref|XP_002938657.1| PREDICTED: integrator complex subunit 11 isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 600
Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 164/200 (82%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V+I GK +M DCGMHM YND R++PDFS I+++ +DC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTEFLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+ +E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKV+AV+L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVVAVNLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + DLLI+E
Sbjct: 184 DRHLGAAWIDKCRPDLLISE 203
>gi|431922648|gb|ELK19568.1| Integrator complex subunit 11 [Pteropus alecto]
Length = 603
Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 165/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD++L+I+AYYAGHVLGAAMF +VG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIRVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA IDR + +LLITE
Sbjct: 189 AAWIDRCRPNLLITE 203
>gi|15029864|gb|AAH11155.1| Cleavage and polyadenylation specific factor 3-like [Mus musculus]
Length = 600
Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 127/195 (65%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I+GK +M DCGMHM YND R++PDFS I++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+A L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVADHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|432090010|gb|ELK23618.1| Integrator complex subunit 11 [Myotis davidii]
Length = 561
Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 126/194 (64%), Positives = 164/194 (84%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+HF
Sbjct: 44 GAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISHF 103
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +C
Sbjct: 104 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 163
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
MKKV+AV L QTVQVD++LQI+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGA
Sbjct: 164 MKKVVAVRLHQTVQVDEELQIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 223
Query: 189 ARIDRLQLDLLITE 202
A ID+ + +LLITE
Sbjct: 224 AWIDKCRPNLLITE 237
>gi|410989914|ref|XP_004001198.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11
[Felis catus]
Length = 598
Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIGGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|443694305|gb|ELT95478.1| hypothetical protein CAPTEDRAFT_151615 [Capitella teleta]
Length = 600
Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 125/200 (62%), Positives = 165/200 (82%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I + LGAGQ+VG+SC++V+I GK +M DCGMHM YND R++PDFS I+K + +DC
Sbjct: 4 IRVVPLGAGQDVGRSCILVSIGGKNLMLDCGMHMGYNDERRFPDFSYINKEGPLTDYLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+ +E+ G++GPIYMT+PT+A+ PI+LEDYRK+ V+R+GE FTS
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGFDGPIYMTHPTKAICPILLEDYRKITVERKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ I CMKK IA++L QT+QVD +L+I+AYYAGHVLGAAM + +VG+ ++VYTGDYNMTP
Sbjct: 124 EMIKSCMKKTIAMNLHQTIQVDDELEIKAYYAGHVLGAAMIHIRVGEQSVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA IDR + DLLITE
Sbjct: 184 DRHLGAAWIDRCRPDLLITE 203
>gi|359319514|ref|XP_003639102.1| PREDICTED: integrator complex subunit 11-like [Canis lupus
familiaris]
Length = 600
Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|197099184|ref|NP_001124760.1| integrator complex subunit 11 [Pongo abelii]
gi|55725797|emb|CAH89679.1| hypothetical protein [Pongo abelii]
Length = 655
Score = 286 bits (732), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|403297738|ref|XP_003939709.1| PREDICTED: integrator complex subunit 11 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 600
Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|296206477|ref|XP_002750225.1| PREDICTED: integrator complex subunit 11 isoform 1 [Callithrix
jacchus]
Length = 600
Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|348551496|ref|XP_003461566.1| PREDICTED: integrator complex subunit 11 [Cavia porcellus]
Length = 600
Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|402852593|ref|XP_003891002.1| PREDICTED: integrator complex subunit 11 isoform 1 [Papio anubis]
gi|355557446|gb|EHH14226.1| hypothetical protein EGK_00111 [Macaca mulatta]
gi|387540112|gb|AFJ70683.1| integrator complex subunit 11 [Macaca mulatta]
Length = 600
Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|426327390|ref|XP_004024501.1| PREDICTED: integrator complex subunit 11 isoform 1 [Gorilla gorilla
gorilla]
Length = 600
Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|118572558|sp|Q5NVE6.2|INT11_PONAB RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
Length = 600
Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|397476276|ref|XP_003809533.1| PREDICTED: integrator complex subunit 11 isoform 1 [Pan paniscus]
gi|410206788|gb|JAA00613.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410251172|gb|JAA13553.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410297680|gb|JAA27440.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
gi|410349815|gb|JAA41511.1| cleavage and polyadenylation specific factor 3-like [Pan
troglodytes]
Length = 600
Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|33300633|ref|NP_060341.2| integrator complex subunit 11 isoform 2 [Homo sapiens]
gi|118572557|sp|Q5TA45.2|INT11_HUMAN RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein; AltName: Full=Protein
related to CPSF subunits of 68 kDa; Short=RC-68
gi|14124912|gb|AAH07978.1| Cleavage and polyadenylation specific factor 3-like [Homo sapiens]
gi|60650138|tpg|DAA05669.1| TPA_exp: beta-lactamase fold protein family member RC-68 [Homo
sapiens]
gi|78100161|tpg|DAA05728.1| TPA_exp: integrator complex subunit 11 [Homo sapiens]
gi|119576636|gb|EAW56232.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Homo sapiens]
gi|119576638|gb|EAW56234.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Homo sapiens]
Length = 600
Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|56403864|emb|CAI29717.1| hypothetical protein [Pongo abelii]
Length = 600
Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|156546030|ref|XP_001608037.1| PREDICTED: integrator complex subunit 11-like isoform 1 [Nasonia
vitripennis]
gi|345498393|ref|XP_003428220.1| PREDICTED: integrator complex subunit 11-like isoform 2 [Nasonia
vitripennis]
gi|345498395|ref|XP_003428221.1| PREDICTED: integrator complex subunit 11-like isoform 3 [Nasonia
vitripennis]
Length = 595
Score = 285 bits (730), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 161/200 (80%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V++ GK IM DCGMHM +ND R++PDFS I N IDC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSVGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+FTE+ GY GPIYMT+PT+A+API+LED RKV V+R+GE FTS
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKVIAV L Q+V VD +L+I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSIVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + DLLI+E
Sbjct: 184 DRHLGAAWIDKCRPDLLISE 203
>gi|343958192|dbj|BAK62951.1| protein related to CPSF subunits 68 kDa [Pan troglodytes]
Length = 600
Score = 285 bits (730), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|281348165|gb|EFB23749.1| hypothetical protein PANDA_020173 [Ailuropoda melanoleuca]
Length = 591
Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 126/194 (64%), Positives = 163/194 (84%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+HF
Sbjct: 1 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISHF 60
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +C
Sbjct: 61 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 120
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
MKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGA
Sbjct: 121 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 180
Query: 189 ARIDRLQLDLLITE 202
A IDR + +LLITE
Sbjct: 181 AWIDRCRPNLLITE 194
>gi|351697497|gb|EHB00416.1| Integrator complex subunit 11 [Heterocephalus glaber]
Length = 672
Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 82 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 141
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 142 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 201
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 202 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 261
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 262 AAWIDKCRPNLLITE 276
>gi|340728535|ref|XP_003402577.1| PREDICTED: integrator complex subunit 11-like [Bombus terrestris]
gi|350421011|ref|XP_003492700.1| PREDICTED: integrator complex subunit 11-like [Bombus impatiens]
Length = 595
Score = 285 bits (729), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 161/200 (80%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V++ GK IM DCGMHM +ND R++PDFS I N IDC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPTTNYIDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+FTE+ GY GPIYMT+PT+A+API+LED RKV V+R+GE FTS
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKVIAV L Q+V VD +L+I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSIVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + DLLI+E
Sbjct: 184 DRHLGAAWIDKCRPDLLISE 203
>gi|395840791|ref|XP_003793235.1| PREDICTED: integrator complex subunit 11 isoform 1 [Otolemur
garnettii]
Length = 600
Score = 285 bits (729), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM ++D R++PDFS I++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITQSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|383859336|ref|XP_003705151.1| PREDICTED: integrator complex subunit 11-like isoform 1 [Megachile
rotundata]
Length = 595
Score = 285 bits (729), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 161/200 (80%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V++ GK IM DCGMHM +ND R++PDFS I N IDC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+FTE+ GY GPIYMT+PT+A+API+LED RKV V+R+GE FTS
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKVIAV L Q+V VD +L+I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSIVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + DLLI+E
Sbjct: 184 DRHLGAAWIDKCRPDLLISE 203
>gi|380011463|ref|XP_003689822.1| PREDICTED: integrator complex subunit 11-like [Apis florea]
Length = 595
Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 161/200 (80%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V++ GK IM DCGMHM +ND R++PDFS I N IDC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPATNYIDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+FTE+ GY GPIYMT+PT+A+API+LED RKV V+R+GE FTS
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKVIAV L Q+V VD +L+I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSIVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + DLLI+E
Sbjct: 184 DRHLGAAWIDKCRPDLLISE 203
>gi|395518397|ref|XP_003763348.1| PREDICTED: integrator complex subunit 11 [Sarcophilus harrisii]
Length = 393
Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 128/200 (64%), Positives = 164/200 (82%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V+I GK +M DCGMHM YND R++PDFS I+++ + +DC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG + VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESAVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + +LLITE
Sbjct: 184 DRHLGAAWIDKCRPNLLITE 203
>gi|328776642|ref|XP_003249190.1| PREDICTED: integrator complex subunit 11-like [Apis mellifera]
Length = 603
Score = 285 bits (729), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 161/200 (80%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V++ GK IM DCGMHM +ND R++PDFS I N IDC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIIPEGPATNYIDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+FTE+ GY GPIYMT+PT+A+API+LED RKV V+R+GE FTS
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKVIAV L Q+V VD +L+I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSIVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + DLLI+E
Sbjct: 184 DRHLGAAWIDKCRPDLLISE 203
>gi|444519369|gb|ELV12789.1| Integrator complex subunit 11 [Tupaia chinensis]
Length = 601
Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 125/196 (63%), Positives = 165/196 (84%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
++GAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+
Sbjct: 9 LVGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIIS 68
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
HFHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I
Sbjct: 69 HFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIK 128
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHL
Sbjct: 129 DCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHL 188
Query: 187 GAARIDRLQLDLLITE 202
GAA ID+ + +LLITE
Sbjct: 189 GAAWIDKCRPNLLITE 204
>gi|327288530|ref|XP_003228979.1| PREDICTED: integrator complex subunit 11-like [Anolis carolinensis]
Length = 600
Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 165/200 (82%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V+I GK +M DCGMHM YND R++PDFS I+++ + +DC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LED+RK+ VD++GE FTS
Sbjct: 64 LIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + DLLI+E
Sbjct: 184 DRHLGAAWIDKCRPDLLISE 203
>gi|441671688|ref|XP_004093259.1| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11
[Nomascus leucogenys]
Length = 585
Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|281201684|gb|EFA75892.1| integrator complex subunit 11 [Polysphondylium pallidum PN500]
Length = 648
Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 134/229 (58%), Positives = 163/229 (71%), Gaps = 27/229 (11%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
M I + LGAGQ+VG+SCV+V+I K IMFDCGMHM Y+D R++PDFS ISK+ F +
Sbjct: 1 MGIKVVPLGAGQDVGRSCVIVSIGNKNIMFDCGMHMGYHDERRFPDFSFISKTKQFTKVL 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMT---------------------------Y 93
DC++ITHFHLDH GALP+FTEICGY+GPIYMT
Sbjct: 61 DCVIITHFHLDHCGALPYFTEICGYDGPIYMTVCYKCLISISIYKYNYNSLTFMLQLIQL 120
Query: 94 PTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYY 153
PT+A+ PI+LEDYRK++VDR+GE FT I +CMKKVI V L QT+ VD +L I+ YY
Sbjct: 121 PTKAIVPILLEDYRKIVVDRKGETNFFTPQMIKDCMKKVIPVALHQTIDVDDELSIKPYY 180
Query: 154 AGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
AGHVLGAAMFY KVG+ ++VYTGDYNMTPDRHLG+A ID + LLITE
Sbjct: 181 AGHVLGAAMFYCKVGEESVVYTGDYNMTPDRHLGSAWIDAVNPTLLITE 229
>gi|307170840|gb|EFN62951.1| Integrator complex subunit 11 [Camponotus floridanus]
Length = 595
Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 127/195 (65%), Positives = 160/195 (82%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V++ GK IM DCGMHM +ND R++PDFS I N IDC++I+H
Sbjct: 9 LGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVAEGPATNYIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+FTE+ GY GPIYMT+PT+A+API+LED RKV V+R+GE FTS I +
Sbjct: 69 FHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L Q+V VD +L+I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVTLHQSVMVDPELEIKAYYAGHVLGAAMFWIRVGSQSIVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLI+E
Sbjct: 189 AAWIDKCRPDLLISE 203
>gi|158256210|dbj|BAF84076.1| unnamed protein product [Homo sapiens]
Length = 606
Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 125/194 (64%), Positives = 163/194 (84%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +C
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
MKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGA
Sbjct: 136 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 195
Query: 189 ARIDRLQLDLLITE 202
A ID+ + +LLITE
Sbjct: 196 AWIDKCRPNLLITE 209
>gi|397476278|ref|XP_003809534.1| PREDICTED: integrator complex subunit 11 isoform 2 [Pan paniscus]
Length = 606
Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 125/194 (64%), Positives = 163/194 (84%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +C
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
MKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGA
Sbjct: 136 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 195
Query: 189 ARIDRLQLDLLITE 202
A ID+ + +LLITE
Sbjct: 196 AWIDKCRPNLLITE 209
>gi|374253819|ref|NP_001243385.1| integrator complex subunit 11 isoform 1 [Homo sapiens]
gi|119576642|gb|EAW56238.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_f
[Homo sapiens]
Length = 606
Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 125/194 (64%), Positives = 163/194 (84%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +C
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
MKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGA
Sbjct: 136 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 195
Query: 189 ARIDRLQLDLLITE 202
A ID+ + +LLITE
Sbjct: 196 AWIDKCRPNLLITE 209
>gi|193786492|dbj|BAG51775.1| unnamed protein product [Homo sapiens]
Length = 606
Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 125/194 (64%), Positives = 163/194 (84%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +C
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
MKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGA
Sbjct: 136 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 195
Query: 189 ARIDRLQLDLLITE 202
A ID+ + +LLITE
Sbjct: 196 AWIDKCRPNLLITE 209
>gi|157107341|ref|XP_001649735.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108879612|gb|EAT43837.1| AAEL004757-PA [Aedes aegypti]
Length = 613
Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 127/195 (65%), Positives = 159/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++++ GK IM DCGMHM YND R++PDFS I N IDC++I+H
Sbjct: 9 LGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIVPEGPITNHIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ TE+ GY GPIYMT+PT+A+API+LED RKV V+R+GE FT+ I +
Sbjct: 69 FHLDHCGALPYMTEMIGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVIAV L Q+V VD +L+I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLITE
Sbjct: 189 AAWIDKCKPDLLITE 203
>gi|426327392|ref|XP_004024502.1| PREDICTED: integrator complex subunit 11 isoform 2 [Gorilla gorilla
gorilla]
Length = 606
Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 125/194 (64%), Positives = 163/194 (84%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+HF
Sbjct: 16 GAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 75
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +C
Sbjct: 76 HLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 135
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
MKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGA
Sbjct: 136 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 195
Query: 189 ARIDRLQLDLLITE 202
A ID+ + +LLITE
Sbjct: 196 AWIDKCRPNLLITE 209
>gi|426240429|ref|XP_004014105.1| PREDICTED: integrator complex subunit 11 [Ovis aries]
Length = 515
Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 163/195 (83%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM ++D R++PDFS I++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|274326663|ref|NP_001094578.1| integrator complex subunit 11 [Bos taurus]
gi|152941100|gb|ABS44987.1| related to CPSF subunits 68 kDa [Bos taurus]
Length = 599
Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 162/195 (83%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM ++D R++PDFS I++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + LLITE
Sbjct: 189 AAWIDKCRPSLLITE 203
>gi|344283025|ref|XP_003413273.1| PREDICTED: integrator complex subunit 11-like [Loxodonta africana]
Length = 719
Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 125/194 (64%), Positives = 162/194 (83%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQ+VG+SC++V++ GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+HF
Sbjct: 129 GAGQDVGRSCILVSVAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHF 188
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F+E+ GY+GPIYMT PT+A+ PI+LEDYRK+ VD++GE FTS I +C
Sbjct: 189 HLDHCGALPYFSEMVGYDGPIYMTPPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDC 248
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
MKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGA
Sbjct: 249 MKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGA 308
Query: 189 ARIDRLQLDLLITE 202
A IDR + +LLITE
Sbjct: 309 AWIDRCRPNLLITE 322
>gi|440911726|gb|ELR61363.1| Integrator complex subunit 11 [Bos grunniens mutus]
Length = 599
Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 162/195 (83%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM ++D R++PDFS I++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + LLITE
Sbjct: 189 AAWIDKCRPSLLITE 203
>gi|125773833|ref|XP_001358175.1| GA15164 [Drosophila pseudoobscura pseudoobscura]
gi|54637910|gb|EAL27312.1| GA15164 [Drosophila pseudoobscura pseudoobscura]
Length = 597
Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 127/195 (65%), Positives = 159/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++T+ GK IM DCGMHM YND R++PDFS I + IDC++I+H
Sbjct: 9 LGAGQDVGRSCLLLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ +EI GYNGPIYMT+PT+A+API+LED RKV V+R+GE FT+ I +
Sbjct: 69 FHLDHCGALPYMSEIVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVI V L Q++ VD DL+I+AYYAGHVLGAAMF+ KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLI+E
Sbjct: 189 AAWIDKCRPDLLISE 203
>gi|343958314|dbj|BAK63012.1| protein related to CPSF subunits 68 kDa [Pan troglodytes]
Length = 600
Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 125/195 (64%), Positives = 163/195 (83%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQV +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVHDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|307215032|gb|EFN89859.1| Integrator complex subunit 11 [Harpegnathos saltator]
Length = 594
Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 164/200 (82%), Gaps = 1/200 (0%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V++ GK IM DCGMHM +ND R++PDFS IS+ ++ IDC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYISEGAATDH-IDC 62
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+FTE+ GY GPIYMT+PT+A+API+LED RKV V+R+GE FTS
Sbjct: 63 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 122
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +C+KKVIAV L Q+V VD DL+I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTP
Sbjct: 123 QMIKDCIKKVIAVTLHQSVMVDPDLEIKAYYAGHVLGAAMFWVRVGSQSIVYTGDYNMTP 182
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + DLLI+E
Sbjct: 183 DRHLGAAWIDKCRPDLLISE 202
>gi|355680857|gb|AER96662.1| cleavage and polyadenylation specific factor 3-like protein
[Mustela putorius furo]
Length = 440
Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 125/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM ++D R++PDFS I+++ + +DC++I+H
Sbjct: 18 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRNGRLTDFLDCVIISH 77
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 78 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 138 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 197
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 198 AAWIDKCRPNLLITE 212
>gi|312381513|gb|EFR27247.1| hypothetical protein AND_06171 [Anopheles darlingi]
Length = 624
Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 127/195 (65%), Positives = 158/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++++ GK IM DCGMHM YND R++PDFS I N IDC++I+H
Sbjct: 9 LGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIIPEGPITNHIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ TE+ GY GPIYMT+PT+A+API+LED RKV V+R+GE FT I +
Sbjct: 69 FHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTPQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVIAV L Q+V VD +L+I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLITE
Sbjct: 189 AAWIDKCKPDLLITE 203
>gi|170052069|ref|XP_001862054.1| cleavage and polyadenylation specificity factor subunit 3 [Culex
quinquefasciatus]
gi|167873079|gb|EDS36462.1| cleavage and polyadenylation specificity factor subunit 3 [Culex
quinquefasciatus]
Length = 615
Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 159/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++++ GK IM DCGMHM YND R++PDFS I N IDC++I+H
Sbjct: 9 LGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSFIVPEGPITNHIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ TE+ GY GPIYMT+PT+A+API+LED RKV V+R+GE FT+ I +
Sbjct: 69 FHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L Q+V VD +L+I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLITE
Sbjct: 189 AAWIDKCKPDLLITE 203
>gi|432866809|ref|XP_004070946.1| PREDICTED: integrator complex subunit 11-like [Oryzias latipes]
Length = 599
Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 164/200 (82%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V+I GK IM DCGMHM YND R++PDFS ++++ + +DC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYVTQNGRLTDFLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+ +E+ GY+GPIYMT+PT+A+ PI+LED+RK+ VD++GE FTS
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKV+ ++L QTVQVD +L+I+AYYAGHVLGAAM Y KVG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVYIKVGSESVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + D+LI+E
Sbjct: 184 DRHLGAAWIDKCRPDILISE 203
>gi|427785581|gb|JAA58242.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Rhipicephalus pulchellus]
Length = 587
Score = 282 bits (722), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 163/200 (81%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++++I GK +M DCGMHM +ND R++PDFS I++ N +DC
Sbjct: 4 ISVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGFNDERRFPDFSYITQEGPLNEHLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+ TE+ GY+GP+YMT+PT+A+ PI+LED+RK+ VDR+GE FTS
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYSGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CM+KV+AV+L Q VQVD +L+I+AYYAGHVLGAAMF +VG ++VYTGDYNMTP
Sbjct: 124 AMIRDCMRKVVAVNLHQAVQVDDELEIKAYYAGHVLGAAMFRIRVGSQSVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA +D+ + DLLITE
Sbjct: 184 DRHLGAAWLDKCRPDLLITE 203
>gi|427779771|gb|JAA55337.1| Putative mrna cleavage and polyadenylation factor ii complex brr5
cpsf subunit [Rhipicephalus pulchellus]
Length = 621
Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 163/200 (81%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++++I GK +M DCGMHM +ND R++PDFS I++ N +DC
Sbjct: 4 ISVTPLGAGQDVGRSCILLSIGGKNVMLDCGMHMGFNDERRFPDFSYITQEGPLNEHLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+ TE+ GY+GP+YMT+PT+A+ PI+LED+RK+ VDR+GE FTS
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYSGPVYMTHPTKAICPILLEDFRKITVDRKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CM+KV+AV+L Q VQVD +L+I+AYYAGHVLGAAMF +VG ++VYTGDYNMTP
Sbjct: 124 AMIRDCMRKVVAVNLHQAVQVDDELEIKAYYAGHVLGAAMFRIRVGSQSVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA +D+ + DLLITE
Sbjct: 184 DRHLGAAWLDKCRPDLLITE 203
>gi|340381556|ref|XP_003389287.1| PREDICTED: integrator complex subunit 11-like [Amphimedon
queenslandica]
Length = 610
Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 125/201 (62%), Positives = 167/201 (83%), Gaps = 1/201 (0%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCD-FNNAID 61
I + LGAGQ+VG+SC++V++ GK IMFDCGMHM YND R++PDF+ I+ + ++ I+
Sbjct: 4 IRIVPLGAGQDVGRSCILVSMGGKNIMFDCGMHMGYNDERRFPDFTYITDTGQTLHDYIN 63
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
C++++HFHLDH GALP+FTE+CGYNGPIYMT+PT+A+ P++LED+R+V VD++GE FT
Sbjct: 64 CVILSHFHLDHCGALPYFTEMCGYNGPIYMTHPTKAICPVLLEDFRRVCVDKKGEQNFFT 123
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
S I +CM+KVI V+L Q V+VD L+I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMT
Sbjct: 124 SQMIKDCMRKVITVNLHQCVKVDDQLEIKAYYAGHVLGAAMFHVRVGHQSVVYTGDYNMT 183
Query: 182 PDRHLGAARIDRLQLDLLITE 202
PDRHLG+A IDR + DLLITE
Sbjct: 184 PDRHLGSAWIDRCRPDLLITE 204
>gi|296479091|tpg|DAA21206.1| TPA: cleavage and polyadenylation specific factor 3-like [Bos
taurus]
Length = 599
Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 161/195 (82%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM ++D R++PDFS I++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYITRSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT PT+A+ PI+LEDYRK+ VD+ GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKXGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + LLITE
Sbjct: 189 AAWIDKCRPSLLITE 203
>gi|158298905|ref|XP_319042.4| AGAP009923-PA [Anopheles gambiae str. PEST]
gi|157014111|gb|EAA13845.4| AGAP009923-PA [Anopheles gambiae str. PEST]
Length = 608
Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 127/195 (65%), Positives = 158/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++++ GK IM DCGMHM YND R++PDFS I N IDC++I+H
Sbjct: 9 LGAGQDVGRSCILLSMAGKNIMLDCGMHMGYNDERRFPDFSFIIPEGPITNHIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ TE+ GY GPIYMT+PT+A+API+LED RKV V+R+GE FT I +
Sbjct: 69 FHLDHCGALPYMTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTPQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVIAV L Q+V VD +L+I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFWIRVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLITE
Sbjct: 189 AAWIDKCKPDLLITE 203
>gi|12053137|emb|CAB66747.1| hypothetical protein [Homo sapiens]
gi|49065540|emb|CAG38588.1| FLJ20542 [Homo sapiens]
gi|117645260|emb|CAL38096.1| hypothetical protein [synthetic construct]
gi|208966056|dbj|BAG73042.1| cleavage and polyadenylation specific factor 3-like [synthetic
construct]
Length = 600
Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 125/195 (64%), Positives = 163/195 (83%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+ T+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHSTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|207079923|ref|NP_001128922.1| DKFZP459J1110 protein [Pongo abelii]
gi|56403907|emb|CAI29738.1| hypothetical protein [Pongo abelii]
Length = 600
Score = 281 bits (720), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 124/194 (63%), Positives = 163/194 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIY+T+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYVTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLIT 201
AA ID+ + +LLIT
Sbjct: 189 AAWIDKCRPNLLIT 202
>gi|348503157|ref|XP_003439132.1| PREDICTED: integrator complex subunit 11-like [Oreochromis
niloticus]
Length = 601
Score = 281 bits (720), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 164/200 (82%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V+I GK IM DCGMHM YND R++PDFS I+++ + +DC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+ +E+ GY+GPIYMT+PT+A+ PI+LED+RK+ VD++GE FTS
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKVI ++L QTVQVD +L+I+AYYAGHVLGAAM + KVG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVIPLNLHQTVQVDDELEIKAYYAGHVLGAAMVHIKVGSESVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + D+LI+E
Sbjct: 184 DRHLGAAWIDKCRPDILISE 203
>gi|350585498|ref|XP_003127541.3| PREDICTED: integrator complex subunit 11-like [Sus scrofa]
Length = 599
Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 124/195 (63%), Positives = 161/195 (82%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM ++D R++PDFS I++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIGGKNVMLDCGMHMGFSDDRRFPDFSYITRHGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKK +AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKAVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>gi|118572556|sp|Q2YDM2.2|INT11_BOVIN RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|158455110|gb|AAI10156.2| CPSF3L protein [Bos taurus]
Length = 599
Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 125/195 (64%), Positives = 161/195 (82%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM ++D R++PDFS ++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + LLITE
Sbjct: 189 AAWIDKCRPSLLITE 203
>gi|410928941|ref|XP_003977858.1| PREDICTED: integrator complex subunit 11-like [Takifugu rubripes]
Length = 601
Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 163/200 (81%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V+I GK IM DCGMHM YND R++PDFS ++++ + +DC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGYNDDRRFPDFSYVTQNGRLTDFLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALPF +E+ GY+GPIYMT+PT+A+ PI+LED+RK+ VD++GE FTS
Sbjct: 64 VIISHFHLDHCGALPFMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKV+ ++L QTVQVD +L+I+AYYAGHVLGAAM KVG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + D+LI+E
Sbjct: 184 DRHLGAAWIDKCRPDILISE 203
>gi|195394529|ref|XP_002055895.1| GJ10637 [Drosophila virilis]
gi|194142604|gb|EDW59007.1| GJ10637 [Drosophila virilis]
Length = 597
Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 158/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++++ GK IM DCGMHM YND R++PDFS I + IDC++I+H
Sbjct: 9 LGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ +EI GY GPIYMT+PT+A+API+LED RKV V+R+GE FT+ I +
Sbjct: 69 FHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVI V L Q++ VD DL+I+AYYAGHVLGAAMF+ KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLITE
Sbjct: 189 AAWIDKCRPDLLITE 203
>gi|195143691|ref|XP_002012831.1| GL23717 [Drosophila persimilis]
gi|194101774|gb|EDW23817.1| GL23717 [Drosophila persimilis]
Length = 597
Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 157/195 (80%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++T+ GK IM DCGMHM YND R++PDFS I + IDC++I+H
Sbjct: 9 LGAGQDVGRSCLLLTMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ +EI GYNGPIYMT+PT+A+API+LED RKV V+R+GE FT+ I +
Sbjct: 69 FHLDHCGALPYMSEIVGYNGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVI V L Q++ VD DL+I+AYYAGHVLGAAMF+ VG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWINVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID + DLLI+E
Sbjct: 189 AAWIDNARPDLLISE 203
>gi|195112455|ref|XP_002000788.1| GI10422 [Drosophila mojavensis]
gi|193917382|gb|EDW16249.1| GI10422 [Drosophila mojavensis]
Length = 597
Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 158/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++++ GK IM DCGMHM YND R++PDFS I + IDC++I+H
Sbjct: 9 LGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ +EI GY GPIYMT+PT+A+API+LED RKV V+R+GE FT+ I +
Sbjct: 69 FHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVI V L Q++ VD DL+I+AYYAGHVLGAAMF+ KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLITE
Sbjct: 189 AAWIDKCRPDLLITE 203
>gi|21358523|ref|NP_651721.1| integrator 11 [Drosophila melanogaster]
gi|7301822|gb|AAF56931.1| integrator 11 [Drosophila melanogaster]
gi|16768852|gb|AAL28645.1| LD08814p [Drosophila melanogaster]
gi|220943570|gb|ACL84328.1| CG1972-PA [synthetic construct]
gi|220953494|gb|ACL89290.1| CG1972-PA [synthetic construct]
Length = 597
Score = 280 bits (715), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 125/195 (64%), Positives = 158/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++++ GK IM DCGMHM YND R++PDFS I + IDC++I+H
Sbjct: 9 LGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ +EI GY GPIYMT+PT+A+API+LED RKV V+R+GE FT+ I +
Sbjct: 69 FHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVI V L Q++ VD DL+I+AYYAGHVLGAAMF+ KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLI+E
Sbjct: 189 AAWIDKCRPDLLISE 203
>gi|195341281|ref|XP_002037239.1| GM12816 [Drosophila sechellia]
gi|195574829|ref|XP_002105386.1| GD21460 [Drosophila simulans]
gi|194131355|gb|EDW53398.1| GM12816 [Drosophila sechellia]
gi|194201313|gb|EDX14889.1| GD21460 [Drosophila simulans]
Length = 597
Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 125/195 (64%), Positives = 158/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++++ GK IM DCGMHM YND R++PDFS I + IDC++I+H
Sbjct: 9 LGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ +EI GY GPIYMT+PT+A+API+LED RKV V+R+GE FT+ I +
Sbjct: 69 FHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVI V L Q++ VD DL+I+AYYAGHVLGAAMF+ KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLI+E
Sbjct: 189 AAWIDKCRPDLLISE 203
>gi|195503187|ref|XP_002098546.1| GE23879 [Drosophila yakuba]
gi|194184647|gb|EDW98258.1| GE23879 [Drosophila yakuba]
Length = 597
Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 125/195 (64%), Positives = 158/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++++ GK IM DCGMHM YND R++PDFS I + IDC++I+H
Sbjct: 9 LGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ +EI GY GPIYMT+PT+A+API+LED RKV V+R+GE FT+ I +
Sbjct: 69 FHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVI V L Q++ VD DL+I+AYYAGHVLGAAMF+ KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLI+E
Sbjct: 189 AAWIDKCRPDLLISE 203
>gi|194765324|ref|XP_001964777.1| GF23370 [Drosophila ananassae]
gi|190615049|gb|EDV30573.1| GF23370 [Drosophila ananassae]
Length = 597
Score = 279 bits (713), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 125/195 (64%), Positives = 158/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++++ GK IM DCGMHM YND R++PDFS I + IDC++I+H
Sbjct: 9 LGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPDGPITSHIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ +EI GY GPIYMT+PT+A+API+LED RKV V+R+GE FT+ I +
Sbjct: 69 FHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVI V L Q++ VD DL+I+AYYAGHVLGAAMF+ KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLI+E
Sbjct: 189 AAWIDKCRPDLLISE 203
>gi|195445135|ref|XP_002070189.1| GK11920 [Drosophila willistoni]
gi|194166274|gb|EDW81175.1| GK11920 [Drosophila willistoni]
Length = 597
Score = 278 bits (712), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 125/195 (64%), Positives = 158/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++++ GK IM DCGMHM YND R++PDFS I + IDC++I+H
Sbjct: 9 LGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ +EI GY GPIYMT+PT+A+API+LED RKV V+R+GE FT+ I +
Sbjct: 69 FHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVI V L Q++ VD DL+I+AYYAGHVLGAAMF+ KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLI+E
Sbjct: 189 AAWIDKCRPDLLISE 203
>gi|66472504|ref|NP_001018457.1| integrator complex subunit 11 [Danio rerio]
gi|82192739|sp|Q503E1.1|INT11_DANRE RecName: Full=Integrator complex subunit 11; Short=Int11; AltName:
Full=Cleavage and polyadenylation-specific factor 3-like
protein; Short=CPSF3-like protein
gi|63102425|gb|AAH95364.1| Zgc:110671 [Danio rerio]
Length = 598
Score = 278 bits (712), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 162/200 (81%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V+I GK IM DCGMHM +ND R++PDFS I+++ +DC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+ +E+ GY+GPIYMT+PT+A+ PI+LED+RK+ VD++GE FTS
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKV+ ++L QTVQVD +L+I+AYYAGHVLGAAM KVG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + D+LI+E
Sbjct: 184 DRHLGAAWIDKCRPDILISE 203
>gi|195062087|ref|XP_001996130.1| GH14325 [Drosophila grimshawi]
gi|193891922|gb|EDV90788.1| GH14325 [Drosophila grimshawi]
Length = 597
Score = 278 bits (712), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 125/195 (64%), Positives = 158/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++++ GK IM DCGMHM YND R++PDFS I + IDC++I+H
Sbjct: 9 LGAGQDVGRSCLLLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSHIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ +EI GY GPIYMT+PT+A+API+LED RKV V+R+GE FT+ I +
Sbjct: 69 FHLDHCGALPYMSEIVGYAGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVI V L Q++ VD DL+I+AYYAGHVLGAAMF+ KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLI+E
Sbjct: 189 AAWIDKCRPDLLISE 203
>gi|91086147|ref|XP_969343.1| PREDICTED: similar to CG1972 CG1972-PA [Tribolium castaneum]
gi|270009886|gb|EFA06334.1| hypothetical protein TcasGA2_TC009205 [Tribolium castaneum]
Length = 595
Score = 278 bits (711), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 123/195 (63%), Positives = 162/195 (83%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++T+ GK IM DCGMHM YND R++PDFS IS+ + IDC++I+H
Sbjct: 9 LGAGQDVGRSCILLTMGGKNIMLDCGMHMGYNDERRFPDFSYISQEGPLTSYIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ +E+ GY+GPIYMT+PT+A+API+LED RKV V+++G+ FTS I +
Sbjct: 69 FHLDHCGALPYMSEMVGYSGPIYMTHPTKAIAPILLEDMRKVSVEKKGDQNFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVIAV L Q++ VD +++I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIAVTLHQSLMVDNEIEIKAYYAGHVLGAAMFWIRVGAQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLI+E
Sbjct: 189 AAWIDKCRPDLLISE 203
>gi|194906134|ref|XP_001981318.1| GG11690 [Drosophila erecta]
gi|190655956|gb|EDV53188.1| GG11690 [Drosophila erecta]
Length = 597
Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 124/195 (63%), Positives = 158/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++++ GK IM DCGMHM +ND R++PDFS I + IDC++I+H
Sbjct: 9 LGAGQDVGRSCLLLSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPITSHIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ +EI GY GPIYMT+PT+A+API+LED RKV V+R+GE FT+ I +
Sbjct: 69 FHLDHCGALPYMSEIVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTTQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVI V L Q++ VD DL+I+AYYAGHVLGAAMF+ KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIPVTLHQSMMVDTDLEIKAYYAGHVLGAAMFWIKVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLI+E
Sbjct: 189 AAWIDKCRPDLLISE 203
>gi|355744837|gb|EHH49462.1| hypothetical protein EGM_00117, partial [Macaca fascicularis]
Length = 592
Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 122/195 (62%), Positives = 162/195 (83%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
+GAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 1 VGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 60
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 61 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 120
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKK +A L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTP+RHLG
Sbjct: 121 CMKKEVAGHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPERHLG 180
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 181 AAWIDKCRPNLLITE 195
>gi|380798915|gb|AFE71333.1| integrator complex subunit 11 isoform 2, partial [Macaca mulatta]
Length = 588
Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 122/191 (63%), Positives = 160/191 (83%)
Query: 12 QEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLD 71
Q+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+HFHLD
Sbjct: 1 QDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLD 60
Query: 72 HIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKK 131
H GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +CMKK
Sbjct: 61 HCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKK 120
Query: 132 VIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARI 191
V+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA I
Sbjct: 121 VVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWI 180
Query: 192 DRLQLDLLITE 202
D+ + +LLITE
Sbjct: 181 DKCRPNLLITE 191
>gi|260790823|ref|XP_002590440.1| hypothetical protein BRAFLDRAFT_289082 [Branchiostoma floridae]
gi|229275634|gb|EEN46451.1| hypothetical protein BRAFLDRAFT_289082 [Branchiostoma floridae]
Length = 597
Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 125/193 (64%), Positives = 159/193 (82%), Gaps = 2/193 (1%)
Query: 12 QEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLD 71
+VG+SC++V+I GK IM DCGMHM YND R++PDF+ I++S N+ +DC++I+HFHLD
Sbjct: 4 SDVGRSCILVSIGGKNIMLDCGMHMGYNDERRFPDFTYITQSGTLNDHLDCVIISHFHLD 63
Query: 72 HIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHIAECM 129
H G LP+ TE+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VDR+GE + FTS I +CM
Sbjct: 64 HCGCLPYMTEMVGYDGPIYMTHPTKAICPILLEDYRKITVDRKGESQANFFTSQMIKDCM 123
Query: 130 KKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAA 189
KKVI V+L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA
Sbjct: 124 KKVIPVNLHQTVQVDDELEIKAYYAGHVLGAAMFLIKVGSESVVYTGDYNMTPDRHLGAA 183
Query: 190 RIDRLQLDLLITE 202
ID+ + DLLITE
Sbjct: 184 WIDKCRPDLLITE 196
>gi|357624104|gb|EHJ75000.1| hypothetical protein KGM_18742 [Danaus plexippus]
Length = 595
Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 123/195 (63%), Positives = 158/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++++ GK IM DCGMHM YND R++PDFS I + IDC++I+H
Sbjct: 9 LGAGQDVGRSCILLSMGGKNIMLDCGMHMGYNDERRFPDFSYIVPEGPITSQIDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ +E+ GY GPIYMT+PT+A+API+LED RKV V+R+GE FTS I +
Sbjct: 69 FHLDHCGALPYMSEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
C+KKV AV L Q+V VD +L+I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTPDRHLG
Sbjct: 129 CIKKVTAVTLHQSVMVDNELEIKAYYAGHVLGAAMFWIRVGSQSVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLI+E
Sbjct: 189 AAWIDKCRPDLLISE 203
>gi|256084683|ref|XP_002578556.1| cleavage and polyadenylation specificity factor [Schistosoma
mansoni]
gi|350644758|emb|CCD60512.1| cleavage and polyadenylation specificity factor,putative
[Schistosoma mansoni]
Length = 619
Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 124/201 (61%), Positives = 162/201 (80%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
+I + LGAGQ+VG+SC++VT+ GK IMFDCGMHM YND R++PDF+ I+ N +D
Sbjct: 3 SIRVIPLGAGQDVGRSCILVTLGGKNIMFDCGMHMGYNDDRKFPDFTYITDKGGLNEYLD 62
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
C++I+HFHLDH GALP+ TE+ GY+GPIYMT+PT+A+ PI+LEDYRK+ V+RRG+ FT
Sbjct: 63 CVIISHFHLDHCGALPYMTEVIGYDGPIYMTHPTKAICPILLEDYRKINVERRGDQNFFT 122
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
SD I CM KV V + QTV+VD +L+I+A+YAGHVLGAAMF +VG ++++YTGDYNMT
Sbjct: 123 SDMIYRCMTKVRCVYIHQTVKVDDELEIQAFYAGHVLGAAMFLVRVGTNSVLYTGDYNMT 182
Query: 182 PDRHLGAARIDRLQLDLLITE 202
PDRHLGAA + R + DLLITE
Sbjct: 183 PDRHLGAAWVSRCRPDLLITE 203
>gi|291000374|ref|XP_002682754.1| predicted protein [Naegleria gruberi]
gi|284096382|gb|EFC50010.1| predicted protein [Naegleria gruberi]
Length = 458
Score = 276 bits (705), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 127/200 (63%), Positives = 164/200 (82%), Gaps = 5/200 (2%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SCV+VTI K IMFDCGMHM YND R++PDF ISK+ F IDC++I+H
Sbjct: 1 LGAGQDVGRSCVIVTIGRKTIMFDCGMHMGYNDERRFPDFKFISKNGQFTQTIDCVIISH 60
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGE-VEQ--FTSDH 124
FHLDH GALP+FTE+CGY+GPIYMTYPT+A+API+LED+R+V+VDR+G+ + Q F+S+
Sbjct: 61 FHLDHCGALPYFTEVCGYDGPIYMTYPTKAIAPILLEDFRRVMVDRKGDNLNQGFFSSED 120
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAK--VGDSAMVYTGDYNMTP 182
+ C+KKV ++L QT+ +D +L+I+ YYAGHVLGAAMFY K +++VYTGDYNMT
Sbjct: 121 VKNCIKKVQPLNLHQTIILDDELEIKPYYAGHVLGAAMFYVKDLATGASVVYTGDYNMTA 180
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLG+A IDR + DLLITE
Sbjct: 181 DRHLGSATIDRCRPDLLITE 200
>gi|223647718|gb|ACN10617.1| Integrator complex subunit 11 [Salmo salar]
Length = 343
Score = 275 bits (703), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 121/195 (62%), Positives = 160/195 (82%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK IM DCGMHM +ND R++PDFS I++ +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQQGRLTEFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ +E+ GY+GPIYMT+PT+A+ PI+LED+RK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+ ++L QTVQVD +L+I+AYYAGHVLGAAM KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + D+LI+E
Sbjct: 189 AAWIDKCRPDILISE 203
>gi|326435554|gb|EGD81124.1| integrator complex subunit 11 [Salpingoeca sp. ATCC 50818]
Length = 620
Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 125/201 (62%), Positives = 160/201 (79%), Gaps = 1/201 (0%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
I L LGAGQ+VG+SC++V +NG+ IMFDCGMHM YND R++PDFS ++ D + ID
Sbjct: 37 GIVVLPLGAGQDVGRSCIIVEMNGRTIMFDCGMHMGYNDDRRFPDFSVLADG-DLTSRID 95
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
++I+HFHLDH GALPFF+E+CGY+ PIYMTYPT+A+ P++LEDYRK+ V+R+GE FT
Sbjct: 96 VVIISHFHLDHCGALPFFSEMCGYDKPIYMTYPTKAICPLLLEDYRKISVERKGERNFFT 155
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
S I +CM KV VDL Q+V + D++I+AYYAGHVLGAAMF+ +VGD ++VYTGDYNMT
Sbjct: 156 SQMIKDCMSKVQPVDLHQSVTLPGDIEIKAYYAGHVLGAAMFHVRVGDKSVVYTGDYNMT 215
Query: 182 PDRHLGAARIDRLQLDLLITE 202
PDRHLG A ID Q D +ITE
Sbjct: 216 PDRHLGTAWIDFCQPDAIITE 236
>gi|428177137|gb|EKX46018.1| hypothetical protein GUITHDRAFT_70813 [Guillardia theta CCMP2712]
Length = 485
Score = 274 bits (701), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 123/204 (60%), Positives = 160/204 (78%), Gaps = 2/204 (0%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
M I LGAGQ+VGKSC++VTI GK IM DCGMH YND R++PDF ISK +F I
Sbjct: 1 MQIKVTPLGAGQDVGKSCILVTIGGKNIMLDCGMHPGYNDERRFPDFRYISKEGNFTGLI 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRG--EVE 118
D ++I+HFHLDH G+LP+FTE+ GY+GP+Y T+PT+A+ PI+LEDYRK+ V+RRG E +
Sbjct: 61 DLVIISHFHLDHCGSLPYFTEVLGYDGPMYATHPTKAIMPILLEDYRKISVERRGVEEKD 120
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDY 178
F+S I +CM KV L++T+ +++D +IR YYAGHVLGAAMFY +VG +++YTGDY
Sbjct: 121 MFSSQQIKDCMMKVTPCALEETIMIEEDFEIRPYYAGHVLGAAMFYIRVGQQSILYTGDY 180
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
NMTPDRHLG+AR D+L+ DLLITE
Sbjct: 181 NMTPDRHLGSARCDKLRPDLLITE 204
>gi|391330858|ref|XP_003739869.1| PREDICTED: integrator complex subunit 11-like [Metaseiulus
occidentalis]
Length = 601
Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 120/195 (61%), Positives = 159/195 (81%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++++ GK IM DCGMHM Y D R++PDFS I+ ++ +DC++I+H
Sbjct: 9 LGAGQDVGRSCILISMGGKNIMLDCGMHMGYQDERRFPDFSYINNGGPLDDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALPF +E+ GY GPIYMT+PT+A+ PI+LED+RK+ VD++GE F+ I +
Sbjct: 69 FHLDHCGALPFMSEMIGYTGPIYMTHPTKAICPILLEDFRKICVDKKGEQNFFSQGMIRD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVI +L +T++VD +L+I+AYYAGHVLGAAMF+ KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVIPCNLHETIKVDSELEIKAYYAGHVLGAAMFHIKVGHISIVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA IDR + DLLITE
Sbjct: 189 AAWIDRCRPDLLITE 203
>gi|167525469|ref|XP_001747069.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774364|gb|EDQ87993.1| predicted protein [Monosiga brevicollis MX1]
Length = 730
Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 121/200 (60%), Positives = 159/200 (79%), Gaps = 1/200 (0%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I + LGAGQ+VG+SCV+VT+ G+ IMFDCGMHM YND R++PDF+++++ + ID
Sbjct: 10 IRVVPLGAGQDVGRSCVLVTMGGRTIMFDCGMHMGYNDARRFPDFTQVAQG-PLTDHIDL 68
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+ITHFHLDH GALP+FTE GY+GP+YMT PTRA+A ++LEDYRK+ V R+GE FT
Sbjct: 69 AIITHFHLDHCGALPYFTEQVGYDGPLYMTMPTRAIAQVLLEDYRKIAVSRQGEKNFFTR 128
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
D I C+ K +DL QTV +D+D +I+AYYAGHVLGAAMFY +VG+ ++VYTGDYNM+P
Sbjct: 129 DDIKTCLNKATTIDLHQTVVIDQDFEIKAYYAGHVLGAAMFYVRVGNQSVVYTGDYNMSP 188
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA IDR + D++I+E
Sbjct: 189 DRHLGAAWIDRCEPDVIISE 208
>gi|291238246|ref|XP_002739041.1| PREDICTED: cleavage and polyadenylation specific factor 3-like
[Saccoglossus kowalevskii]
Length = 573
Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 120/193 (62%), Positives = 155/193 (80%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I + LGAGQ+VG+SCV+V+I GK IMFDCGMHM YND R++PDFS I+++ +DC
Sbjct: 4 IKVVPLGAGQDVGRSCVLVSIGGKNIMFDCGMHMGYNDERRFPDFSYITRAGTLTEHLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH G+LP +E+ G++GPIYMT PT+A+ PI+LEDYRK+ V+++GE FTS
Sbjct: 64 VIISHFHLDHCGSLPHMSEMIGFDGPIYMTIPTKAICPILLEDYRKITVEKKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKV+AV+L QTVQVD +L+I+AYYAGHVLGAAMF+ KVG ++VYTGDYNMT
Sbjct: 124 QMIKDCMKKVVAVNLHQTVQVDDELEIKAYYAGHVLGAAMFHVKVGSQSVVYTGDYNMTA 183
Query: 183 DRHLGAARIDRLQ 195
DRHLG D LQ
Sbjct: 184 DRHLGCRERDFLQ 196
>gi|198413502|ref|XP_002128796.1| PREDICTED: similar to cleavage and polyadenylation specific factor
3-like [Ciona intestinalis]
Length = 605
Score = 269 bits (687), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 122/201 (60%), Positives = 157/201 (78%), Gaps = 1/201 (0%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISK-SCDFNNAID 61
I + LGAGQ+VG+SC++VT+ GK IM DCGMHM +ND R++P F I+ ID
Sbjct: 4 IKLVPLGAGQDVGRSCIIVTLGGKNIMLDCGMHMGFNDERRFPYFDYITGGKGTLTEHID 63
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
C++I+HFHLDH GALP+ +E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VDR+GE F
Sbjct: 64 CVIISHFHLDHCGALPYMSEMKGYDGPIYMTHPTKAICPILLEDYRKITVDRKGETNFFD 123
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
S I +CMKKVI V+L QT+ VD L+I+AYYAGHVLGAAMF KVG +++YTGDYNMT
Sbjct: 124 SKMIKDCMKKVIPVNLHQTIHVDDQLEIKAYYAGHVLGAAMFLLKVGTDSVLYTGDYNMT 183
Query: 182 PDRHLGAARIDRLQLDLLITE 202
PDRHLGAA +D+ + D+LITE
Sbjct: 184 PDRHLGAAWVDKCRPDVLITE 204
>gi|300706889|ref|XP_002995677.1| hypothetical protein NCER_101357 [Nosema ceranae BRL01]
gi|239604869|gb|EEQ82006.1| hypothetical protein NCER_101357 [Nosema ceranae BRL01]
Length = 500
Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 118/195 (60%), Positives = 153/195 (78%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V I G+ IM DCGMHM YND R++PDFS +SK+ DFN IDCI+I+H
Sbjct: 6 LGAGQDVGRSCIIVNIEGRTIMLDCGMHMGYNDQRRFPDFSALSKTGDFNKLIDCIIISH 65
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALPFFTEIC Y+GPIYMT PT+A+ PI+LED+RK+ + + + F+ I
Sbjct: 66 FHLDHTGALPFFTEICKYDGPIYMTKPTKAVIPILLEDFRKISAPKSSDGKFFSYQDIQN 125
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
C+KK+I ++ +T + D++ I YYAGHV+GAAMF+ +VG ++VYTGDYNMTPDRHLG
Sbjct: 126 CLKKIITINFNETYKHDENFFITPYYAGHVIGAAMFHVQVGSRSVVYTGDYNMTPDRHLG 185
Query: 188 AARIDRLQLDLLITE 202
AA I L+ DLLITE
Sbjct: 186 AASIPCLRPDLLITE 200
>gi|429963288|gb|ELA42832.1| hypothetical protein VICG_00147 [Vittaforma corneae ATCC 50505]
Length = 513
Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 158/200 (79%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ L LGAGQE+G+SC+VV IN K IMFDCGMHM Y+D R++PDF +SK+ +F+ +DC
Sbjct: 1 MNVLALGAGQEIGRSCIVVNINNKTIMFDCGMHMGYSDSRKFPDFQALSKTGNFDKIVDC 60
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
I+I+HFHLDH GALP+FTE+ GY GPIYMTYPT+A+ PI+LED +K+L + + ++
Sbjct: 61 ILISHFHLDHCGALPYFTEVLGYKGPIYMTYPTKAVLPILLEDCQKILSMKSHDSNIYSF 120
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ I +CM+K++ +++ +TV+V K I AYYAGHV+GAAMFY KVGD ++VYTGDY+ T
Sbjct: 121 EDIKKCMEKIVPINMNETVEVSKGFTITAYYAGHVIGAAMFYVKVGDQSVVYTGDYSTTA 180
Query: 183 DRHLGAARIDRLQLDLLITE 202
D+HLG A ID L+ DL+ITE
Sbjct: 181 DQHLGTAWIDTLRPDLMITE 200
>gi|193608339|ref|XP_001949326.1| PREDICTED: integrator complex subunit 11-like isoform 1
[Acyrthosiphon pisum]
gi|328710634|ref|XP_003244318.1| PREDICTED: integrator complex subunit 11-like isoform 2
[Acyrthosiphon pisum]
Length = 603
Score = 262 bits (669), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 118/195 (60%), Positives = 154/195 (78%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++TI + IM DCGMHM Y D R++PDFS I+ + + IDC++I+H
Sbjct: 12 LGAGQDVGRSCILITIGNRNIMLDCGMHMGYQDERKFPDFSYITSDGNITDIIDCVIISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GAL + TE GY+GPIYMT+PT+A+API+LED RK LV+ E + FTS I +
Sbjct: 72 FHLDHCGALSYLTEHLGYHGPIYMTHPTKAIAPILLEDMRKHLVEYEEEAKYFTSSAIRD 131
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV AV+L + V V D++++AYYAGHVLGAAMFY KVG+ ++VYTGD++MTPDRHLG
Sbjct: 132 CMKKVTAVNLHEVVTVKDDIELKAYYAGHVLGAAMFYIKVGNDSVVYTGDFSMTPDRHLG 191
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + LLITE
Sbjct: 192 AAWIDKCRPTLLITE 206
>gi|312083284|ref|XP_003143797.1| RNA-metabolising metallo-beta-lactamase [Loa loa]
gi|307761039|gb|EFO20273.1| RNA-metabolising metallo-beta-lactamase [Loa loa]
Length = 644
Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 156/201 (77%), Gaps = 1/201 (0%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I + LGAG++VG+SC++V+I GK +M DCGMHM Y+D R++PDFS IS +DC
Sbjct: 59 IKIVPLGAGRDVGRSCILVSIGGKNVMLDCGMHMGYSDERRFPDFSFISGGGSLTEFLDC 118
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++ITHFHLDH G+LP +E+ GY+GPIYMTYPT+A+AP++LEDYRK+ + +G+ FTS
Sbjct: 119 VIITHFHLDHCGSLPHMSEVIGYDGPIYMTYPTKAIAPVLLEDYRKIQTEFKGDKNFFTS 178
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I CMKKVIA+++ + + +D +L IRA+YAGHVLGAAMF VG +++YTGD+N TP
Sbjct: 179 QMIKNCMKKVIAINIHEKIDIDNELSIRAFYAGHVLGAAMFQIMVGSESVLYTGDFNTTP 238
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHLGAAR++ L+ DLLI+E
Sbjct: 239 DRHLGAARVEPGLKPDLLISE 259
>gi|396082329|gb|AFN83939.1| putative beta-lactamase fold-containingexonuclease [Encephalitozoon
romaleae SJ-2008]
Length = 496
Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 118/200 (59%), Positives = 158/200 (79%), Gaps = 2/200 (1%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LGAGQ+VG+SCV+VTI G+ IMFDCGMHM +ND R++PDFS ISK+ F+ AIDC
Sbjct: 1 MNVVPLGAGQDVGRSCVLVTIGGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKAIDC 60
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+VI+HFHLDH GALP+FTE+CGYNGP+YMT PT+ + P++L+D+RK+ V+ +G+ FT
Sbjct: 61 VVISHFHLDHCGALPYFTEVCGYNGPVYMTLPTKEVCPVLLDDFRKI-VEGKGD-SIFTY 118
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I CMKKV +++ +T + D+D I YYAGHVLGAAMF+ VGD ++VYTGDY+ TP
Sbjct: 119 QDILNCMKKVTTINMNETYKHDEDFYITPYYAGHVLGAAMFHVVVGDQSVVYTGDYSTTP 178
Query: 183 DRHLGAARIDRLQLDLLITE 202
D+HLG A I ++ DLLITE
Sbjct: 179 DKHLGPASIKCVRPDLLITE 198
>gi|170595519|ref|XP_001902415.1| RNA-metabolising metallo-beta-lactamase family protein [Brugia
malayi]
gi|158589929|gb|EDP28737.1| RNA-metabolising metallo-beta-lactamase family protein [Brugia
malayi]
Length = 589
Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 114/201 (56%), Positives = 156/201 (77%), Gaps = 1/201 (0%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I + LGAG++VG+SC++V+I G+ +M DCGMHM Y+D R++PDFS I+ +DC
Sbjct: 4 IKVVPLGAGRDVGRSCILVSIGGRNVMLDCGMHMGYSDERRFPDFSFINGGGSLTEFLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++ITHFHLDH G+LP +E+ GY+GPIYMTYPT+A+AP++LEDYRKV + +G+ FTS
Sbjct: 64 VIITHFHLDHCGSLPHMSEVVGYDGPIYMTYPTKAIAPVLLEDYRKVQTEFKGDKNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I CMKKVIA+++ + + VD +L IRA+YAGHVLGAAMF VG +++YTGD+N TP
Sbjct: 124 QMIKNCMKKVIAINIHEKIDVDNELSIRAFYAGHVLGAAMFQIMVGSESVLYTGDFNTTP 183
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHLGAAR++ L+ DLLI+E
Sbjct: 184 DRHLGAARVEPGLKPDLLISE 204
>gi|308509314|ref|XP_003116840.1| hypothetical protein CRE_01624 [Caenorhabditis remanei]
gi|308241754|gb|EFO85706.1| hypothetical protein CRE_01624 [Caenorhabditis remanei]
Length = 612
Score = 258 bits (660), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 116/190 (61%), Positives = 146/190 (76%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
I + LGAGQ+VG+SC+++TI GK IM DCGMHM Y D R++PDFS I + +D
Sbjct: 7 TIKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLD 66
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
C++I+HFHLDH G+LP +EI GY+GPIYMTYPT+A+ P++LEDYRKV D +GE FT
Sbjct: 67 CVIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGESNFFT 126
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
SD I CMKKVI L + +QVD L IRA+YAGHVLGAAMF ++GD +++YTGDYNMT
Sbjct: 127 SDDIKNCMKKVIGCALHEIIQVDDQLSIRAFYAGHVLGAAMFEIRLGDHSVLYTGDYNMT 186
Query: 182 PDRHLGAARI 191
PDRHLGAAR+
Sbjct: 187 PDRHLGAARV 196
>gi|32564696|ref|NP_495706.2| Protein F10B5.8 [Caenorhabditis elegans]
gi|26985793|emb|CAB54223.2| Protein F10B5.8 [Caenorhabditis elegans]
Length = 608
Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 114/189 (60%), Positives = 146/189 (77%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I + LGAGQ+VG+SC+++TI GK IM DCGMHM Y D R++PDFS I + +DC
Sbjct: 8 IKIVPLGAGQDVGRSCILITIGGKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 67
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH G+LP +EI GY+GPIYMTYPT+A+ P++LEDYRKV D +GE FTS
Sbjct: 68 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGETNFFTS 127
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
D I CMKKV+ L + + VD +L IRA+YAGHVLGAAMF ++GD +++YTGDYNMTP
Sbjct: 128 DDIKNCMKKVVGCALHEIIHVDNELSIRAFYAGHVLGAAMFEIRLGDHSVLYTGDYNMTP 187
Query: 183 DRHLGAARI 191
DRHLGAAR+
Sbjct: 188 DRHLGAARV 196
>gi|303391170|ref|XP_003073815.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
gi|303302963|gb|ADM12455.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
Length = 496
Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 112/200 (56%), Positives = 158/200 (79%), Gaps = 2/200 (1%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LGAGQ+VG+SC++VTING+ +MFDCGMHM +ND R++PDFS ISK+ +F+ IDC
Sbjct: 1 MNVVPLGAGQDVGRSCILVTINGRTVMFDCGMHMGFNDERRFPDFSYISKTKNFDKVIDC 60
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
I+I+HFHLDH GALP+FTE+CGY+GPIYMT PT+ + P++L+D+RK++ + + F+
Sbjct: 61 IIISHFHLDHCGALPYFTEVCGYSGPIYMTLPTKEVCPVLLDDFRKIVGGKGDSI--FSY 118
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I+ CMKKV+ + + +T + D++ I YYAGHVLGAAMF+ VGD ++VYTGDY+ TP
Sbjct: 119 QDISNCMKKVVTISMNETYKHDENFYITPYYAGHVLGAAMFHVSVGDQSVVYTGDYSTTP 178
Query: 183 DRHLGAARIDRLQLDLLITE 202
D+HLG A I ++ DLLITE
Sbjct: 179 DKHLGPASIKCIRPDLLITE 198
>gi|268530366|ref|XP_002630309.1| Hypothetical protein CBG00745 [Caenorhabditis briggsae]
Length = 637
Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 119/201 (59%), Positives = 152/201 (75%), Gaps = 1/201 (0%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I + LGAGQ+VG+SC+++TI K IM DCGMHM Y D R++PDFS I + +DC
Sbjct: 34 IKIVPLGAGQDVGRSCILITIGTKNIMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 93
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH G+LP +EI GY+GPIYMTYPT+A+ P++LEDYRKV D +GE FTS
Sbjct: 94 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAICPVLLEDYRKVQCDIKGETNFFTS 153
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
D I CMKKVI L + +QVD L IRA+YAGHVLGAAMF +VGD +++YTGDYNMTP
Sbjct: 154 DDIKNCMKKVIGCALHEIIQVDDQLSIRAFYAGHVLGAAMFEIRVGDHSVLYTGDYNMTP 213
Query: 183 DRHLGAARI-DRLQLDLLITE 202
DRHLGAAR+ ++ +LI+E
Sbjct: 214 DRHLGAARVLPGVRPTILISE 234
>gi|19074744|ref|NP_586250.1| similarity to HYPOTHETICAL PROTEIN YO47_METJA [Encephalitozoon
cuniculi GB-M1]
gi|19069386|emb|CAD25854.1| similarity to HYPOTHETICAL PROTEIN YO47_METJA [Encephalitozoon
cuniculi GB-M1]
gi|449329879|gb|AGE96147.1| hypothetical protein ECU10_1350 [Encephalitozoon cuniculi]
Length = 496
Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 113/200 (56%), Positives = 155/200 (77%), Gaps = 2/200 (1%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LGAGQ+VG+SC++V+I G+ IMFDCGMHM +ND R++PDFS ISK+ F+ IDC
Sbjct: 1 MNVIPLGAGQDVGRSCILVSIKGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKVIDC 60
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
I+I+HFHLDH GALP+FTE+CGY GPIYMT PT+ + P++L+D+RK++ + + FT
Sbjct: 61 IIISHFHLDHCGALPYFTEVCGYGGPIYMTLPTKEVCPVLLDDFRKIVAGKGDSI--FTY 118
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I+ CMKKV+ + + +T + D+D I YYAGHVLGAAMF+ VGD ++VYTGDY+ TP
Sbjct: 119 QDISNCMKKVVTISMNETYKHDEDFYITPYYAGHVLGAAMFHVVVGDQSVVYTGDYSTTP 178
Query: 183 DRHLGAARIDRLQLDLLITE 202
D+HLG A I ++ DLLITE
Sbjct: 179 DKHLGPASIKCIRPDLLITE 198
>gi|346472285|gb|AEO35987.1| hypothetical protein [Amblyomma maculatum]
Length = 510
Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 112/174 (64%), Positives = 144/174 (82%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
M DCGMHM +ND R++PDFS I++ N +DC++I+HFHLDH GALP+ TE+ GY+GP
Sbjct: 1 MLDCGMHMGFNDERRFPDFSYITQEGPLNEHLDCVIISHFHLDHCGALPYMTEMVGYSGP 60
Query: 89 IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQ 148
IYMT+PT+A+ PI+LEDYRK+ VDR+GE FTS I +CM+KV+AV+L Q VQVD +L+
Sbjct: 61 IYMTHPTKAICPILLEDYRKITVDRKGETNFFTSAMIRDCMRKVVAVNLHQAVQVDDELE 120
Query: 149 IRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTPDRHLGAA +D+ + DLLITE
Sbjct: 121 IKAYYAGHVLGAAMFWIRVGSQSVVYTGDYNMTPDRHLGAAWVDKCRPDLLITE 174
>gi|338722203|ref|XP_001496423.3| PREDICTED: integrator complex subunit 11 [Equus caballus]
Length = 571
Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 113/174 (64%), Positives = 145/174 (83%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
M DCGMHM +ND R++PDFS I+++ + +DC++I+HFHLDH GALP+F+E+ GY+GP
Sbjct: 1 MLDCGMHMGFNDDRRFPDFSYITRNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGP 60
Query: 89 IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQ 148
IYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +CMKKV+AV L QTVQVD +L+
Sbjct: 61 IYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELE 120
Query: 149 IRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 121 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 174
>gi|401827835|ref|XP_003888210.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
gi|392999410|gb|AFM99229.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
Length = 496
Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 114/200 (57%), Positives = 154/200 (77%), Gaps = 2/200 (1%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LGAGQ+VG+SCV+VTI G+ IMFDCGMHM +ND R++PDFS ISK+ F+ IDC
Sbjct: 1 MNVVPLGAGQDVGRSCVLVTIGGRTIMFDCGMHMGFNDERRFPDFSYISKTKSFDKVIDC 60
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+FTE+CGYNGPIYMT PT+ + P++L+D+RK++ + + F+
Sbjct: 61 VIISHFHLDHCGALPYFTEVCGYNGPIYMTLPTKEVCPVLLDDFRKIVGAKGDNI--FSY 118
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I CMKKV + + +T + D+D I YYAGHVLGAAMF+ VGD ++VYTGDY+ TP
Sbjct: 119 QDIVNCMKKVTTISMSETYKHDEDFYITPYYAGHVLGAAMFHVVVGDQSVVYTGDYSTTP 178
Query: 183 DRHLGAARIDRLQLDLLITE 202
D+HLG A I ++ DLLITE
Sbjct: 179 DKHLGPASIKCVRPDLLITE 198
>gi|426327394|ref|XP_004024503.1| PREDICTED: integrator complex subunit 11 isoform 3 [Gorilla gorilla
gorilla]
Length = 571
Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 113/174 (64%), Positives = 145/174 (83%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
M DCGMHM +ND R++PDFS I+++ + +DC++I+HFHLDH GALP+F+E+ GY+GP
Sbjct: 1 MLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGP 60
Query: 89 IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQ 148
IYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +CMKKV+AV L QTVQVD +L+
Sbjct: 61 IYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELE 120
Query: 149 IRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 121 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 174
>gi|341890123|gb|EGT46058.1| hypothetical protein CAEBREN_05882 [Caenorhabditis brenneri]
Length = 618
Score = 256 bits (653), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 115/189 (60%), Positives = 145/189 (76%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I + LGAGQ+VG+SC+++TI GK +M DCGMHM Y D R++PDFS I + +DC
Sbjct: 8 IKIVPLGAGQDVGRSCILITIGGKNVMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDC 67
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH G+LP +EI GY+GPIYMTYPT+A+A ++LEDYRKV D +GE FTS
Sbjct: 68 VIISHFHLDHCGSLPHMSEIVGYDGPIYMTYPTKAIAQVLLEDYRKVQCDIKGETNFFTS 127
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
D I CMKK I L + +QVD L IRA+YAGHVLGAAMF +VGD +++YTGDYNMTP
Sbjct: 128 DDIKNCMKKCIGCALHEVIQVDDQLSIRAFYAGHVLGAAMFEIRVGDHSVLYTGDYNMTP 187
Query: 183 DRHLGAARI 191
DRHLGAAR+
Sbjct: 188 DRHLGAARV 196
>gi|374253821|ref|NP_001243389.1| integrator complex subunit 11 isoform 3 [Homo sapiens]
gi|194386866|dbj|BAG59799.1| unnamed protein product [Homo sapiens]
Length = 571
Score = 255 bits (652), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 113/174 (64%), Positives = 145/174 (83%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
M DCGMHM +ND R++PDFS I+++ + +DC++I+HFHLDH GALP+F+E+ GY+GP
Sbjct: 1 MLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGP 60
Query: 89 IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQ 148
IYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +CMKKV+AV L QTVQVD +L+
Sbjct: 61 IYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELE 120
Query: 149 IRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 121 IKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 174
>gi|341903207|gb|EGT59142.1| hypothetical protein CAEBREN_31222 [Caenorhabditis brenneri]
Length = 571
Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 114/184 (61%), Positives = 143/184 (77%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++TI GK +M DCGMHM Y D R++PDFS I + +DC++I+H
Sbjct: 16 LGAGQDVGRSCILITIGGKNVMVDCGMHMGYQDDRRFPDFSYIGGGGRLTDYLDCVIISH 75
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH G+LP +EI GY+GPIYMTYPT+A+A ++LEDYRKV D +GE FTSD I
Sbjct: 76 FHLDHCGSLPHMSEIVGYDGPIYMTYPTKAIAQVLLEDYRKVQCDIKGETNFFTSDDIKN 135
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKK I L + +QVD L IRA+YAGHVLGAAMF +VGD +++YTGDYNMTPDRHLG
Sbjct: 136 CMKKCIGCALHEVIQVDDQLSIRAFYAGHVLGAAMFEIRVGDHSVLYTGDYNMTPDRHLG 195
Query: 188 AARI 191
AAR+
Sbjct: 196 AARV 199
>gi|324504608|gb|ADY41989.1| Integrator complex subunit 11 [Ascaris suum]
Length = 588
Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 113/196 (57%), Positives = 149/196 (76%), Gaps = 1/196 (0%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++++I GK +M DCGMHM Y D R++PDFS IS + + C++I+H
Sbjct: 9 LGAGQDVGRSCILLSIGGKNVMLDCGMHMGYQDERRFPDFSYISGGVPLTDYLHCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ TE+ GY GPIYMTYPT+A+AP++LED+RKV + RGE FTS I
Sbjct: 69 FHLDHCGALPYMTEMVGYEGPIYMTYPTKAIAPVLLEDFRKVQTEYRGETNFFTSQMIKT 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CM+KV V++ + V VD L I+A+YAGHVLGAAMF KVG +++YTGD+N T DRHLG
Sbjct: 129 CMRKVTPVNVNEEVNVDDKLSIQAFYAGHVLGAAMFLIKVGSESVIYTGDFNTTADRHLG 188
Query: 188 AARIDR-LQLDLLITE 202
AA ++ L+ DLLI+E
Sbjct: 189 AAHVEPGLKPDLLISE 204
>gi|384486005|gb|EIE78185.1| hypothetical protein RO3G_02889 [Rhizopus delemar RA 99-880]
Length = 613
Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 111/171 (64%), Positives = 143/171 (83%)
Query: 32 CGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYM 91
GMHM Y+D R++PDFS ISK+ +F + ID ++I+HFHLDH GALPFFTE+ GY+GPIYM
Sbjct: 10 AGMHMGYSDARRFPDFSYISKTGNFTDIIDAVIISHFHLDHCGALPFFTEMLGYDGPIYM 69
Query: 92 TYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRA 151
T+PT+A+ PI+LEDYRK+ V+R+GE FTS I CMKKV AV L QT++VD +L+I+A
Sbjct: 70 THPTKAICPILLEDYRKITVERKGETNFFTSAMIKNCMKKVHAVSLHQTIKVDDELEIKA 129
Query: 152 YYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
YYAGHVLGAAMFY +VG ++VYTGDYNMTPDRHLG+A ID+++ D+L+TE
Sbjct: 130 YYAGHVLGAAMFYVRVGQESVVYTGDYNMTPDRHLGSAWIDKVRPDVLVTE 180
>gi|402471873|gb|EJW05382.1| hypothetical protein EDEG_00046 [Edhazardia aedis USNM 41457]
Length = 507
Score = 252 bits (643), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 115/195 (58%), Positives = 148/195 (75%), Gaps = 1/195 (0%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++ T+ G+ IM DCGMHM YND+R++PDFS ISK FN IDCI+I+H
Sbjct: 6 LGAGQDVGRSCILATLEGRTIMLDCGMHMGYNDYRKFPDFSYISKQLGFNRLIDCIIISH 65
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FH+DH GALP+FTE+ GY+GPIYMT+PT+A+ I+LED RK+ + + + + I
Sbjct: 66 FHIDHCGALPYFTEVLGYDGPIYMTHPTKAICQILLEDTRKI-ARKNNDKMTYNKEDIEN 124
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVI +++ +T + D D I+ Y AGHVLGAAMFY KVG ++VYTGDYN TPDRHLG
Sbjct: 125 CMKKVIPINMNETYEHDVDFIIKPYPAGHVLGAAMFYVKVGCESLVYTGDYNTTPDRHLG 184
Query: 188 AARIDRLQLDLLITE 202
A ID L+ DL ITE
Sbjct: 185 GAWIDCLRPDLFITE 199
>gi|156403103|ref|XP_001639929.1| predicted protein [Nematostella vectensis]
gi|156227060|gb|EDO47866.1| predicted protein [Nematostella vectensis]
Length = 527
Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 106/174 (60%), Positives = 143/174 (82%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
M DCGMHM YND R++PDF I++S +DC++I+HFHLDH GALP+F+E+ GY+GP
Sbjct: 1 MLDCGMHMGYNDERRFPDFDYITRSGKLTEHLDCVLISHFHLDHCGALPYFSEMVGYDGP 60
Query: 89 IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQ 148
IYMT+PT+A+ PI+LEDYRK+ V+R+GE FTS I +CMKKV+ ++L Q+++VD +L+
Sbjct: 61 IYMTHPTKAICPILLEDYRKITVERKGETNFFTSQMIKDCMKKVVPINLHQSIKVDDELE 120
Query: 149 IRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
I+AYYAGHVLGA MF+ +VG ++VYTGDYNMTPDRHLG+A ID+ + D+LITE
Sbjct: 121 IKAYYAGHVLGAVMFHMRVGTESVVYTGDYNMTPDRHLGSAWIDKCRPDILITE 174
>gi|405958713|gb|EKC24813.1| Integrator complex subunit 11 [Crassostrea gigas]
Length = 575
Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 110/176 (62%), Positives = 144/176 (81%), Gaps = 2/176 (1%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRIS--KSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYN 86
M DCGMHM YND R++PDF+ I+ + + +DC++I+HFHLDH GALP+ +E+ GY+
Sbjct: 1 MLDCGMHMGYNDERRFPDFTYITDEEGDKLTDHLDCVIISHFHLDHCGALPYMSEMVGYD 60
Query: 87 GPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKD 146
GPIYMT+PT+A+ PI+LEDYRK+ V+R+GE FTS+ I CMKKV+ V+L +T QVD++
Sbjct: 61 GPIYMTHPTKAICPILLEDYRKITVERKGEENFFTSEMIKNCMKKVVVVNLHETKQVDEE 120
Query: 147 LQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
L+I+AYYAGHVLGAAMF+ KVG ++VYTGDYNMTPDRHLGAA ID+ + DLLITE
Sbjct: 121 LEIKAYYAGHVLGAAMFHIKVGQQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLITE 176
>gi|378756880|gb|EHY66904.1| cleavage and polyadenylation specificity factor subunit 3
[Nematocida sp. 1 ERTm2]
Length = 501
Score = 241 bits (616), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 109/200 (54%), Positives = 151/200 (75%), Gaps = 5/200 (2%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQ++G+SCVVV+I K IMFDCGMHM ++DHR++PDF ++ + + IDC++IT
Sbjct: 5 ILGAGQDIGRSCVVVSIQNKTIMFDCGMHMGHSDHRRFPDF-KLLGAGPYTGVIDCVIIT 63
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDR----RGEVEQFTS 122
HFH+DH G LP+FTE C Y GPIYMT PT+A+ PI+L+DY KV +R + + +
Sbjct: 64 HFHMDHCGGLPYFTERCKYAGPIYMTPPTKAVLPIILQDYCKVYNERDDSSKFQYPTYNE 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
++I CMKKVI + + +TV+++KD I YYAGHVLGAAMF+ +VGD ++VYTGDYNMTP
Sbjct: 124 ENIKACMKKVIPIAMDETVEIEKDFTITPYYAGHVLGAAMFHVRVGDESVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A + ++ ++LITE
Sbjct: 184 DRHLDGAWMPKVYPNVLITE 203
>gi|313238583|emb|CBY13629.1| unnamed protein product [Oikopleura dioica]
Length = 618
Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 113/204 (55%), Positives = 146/204 (71%), Gaps = 4/204 (1%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRIS--KSCDFNNAI 60
I + LGAGQ+VG+SC++V+I K +MFDCGMHM Y D R++PDF+ I+ I
Sbjct: 4 IRIVPLGAGQDVGRSCILVSIGNKNVMFDCGMHMGYQDARRFPDFNYITGGDQTTLTPHI 63
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ- 119
D ++I+HFHLDH GALP+ +E GY GPIYMT PT+ + PI+LED+RKV+ R E
Sbjct: 64 DAVIISHFHLDHCGALPYMSEQVGYEGPIYMTMPTKVICPILLEDFRKVVTKRSAGAETN 123
Query: 120 -FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDY 178
FTS+ I CM+KV V L Q + VD +L I+AYYAGHVLGAAMF VGD +++YTGD+
Sbjct: 124 FFTSEMIKNCMRKVEIVGLHQVINVDDELSIKAYYAGHVLGAAMFKITVGDESVLYTGDF 183
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
NMTPDRHLGAA DR + +LI+E
Sbjct: 184 NMTPDRHLGAAWADRCKPTVLISE 207
>gi|387594235|gb|EIJ89259.1| integrator complex subunit 11 [Nematocida parisii ERTm3]
gi|387594982|gb|EIJ92609.1| integrator complex subunit 11 [Nematocida parisii ERTm1]
Length = 502
Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 108/200 (54%), Positives = 150/200 (75%), Gaps = 5/200 (2%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
VLGAGQ++G+SCVVVTI + IMFDCGMHM ++D+R++PDF + + IDC++IT
Sbjct: 5 VLGAGQDIGRSCVVVTIQNRTIMFDCGMHMGHSDYRRFPDFKLLGPG-PYTGVIDCVIIT 63
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDR----RGEVEQFTS 122
HFH+DH G LP+FTE C Y+GPIYMT PT+A+ PI+L+DY KV +R + + +
Sbjct: 64 HFHMDHCGGLPYFTERCKYSGPIYMTPPTKAVLPIILQDYCKVYNERDDVGKFQHPTYNE 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
++I CMKK+I + +++TV+++KD I YYAGHVLGAAM++ KVGD ++VYTGDYNMTP
Sbjct: 124 ENIKNCMKKIIPISIEETVEIEKDFTITPYYAGHVLGAAMYHVKVGDESVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A + ++ +LITE
Sbjct: 184 DRHLDGAWMPKVYPSVLITE 203
>gi|119576641|gb|EAW56237.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_e
[Homo sapiens]
Length = 578
Score = 239 bits (610), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 109/195 (55%), Positives = 145/195 (74%), Gaps = 22/195 (11%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQ+ KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQI----------------------KVGSESVVYTGDYNMTPDRHLG 166
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 167 AAWIDKCRPNLLITE 181
>gi|313224131|emb|CBY43589.1| unnamed protein product [Oikopleura dioica]
Length = 213
Score = 238 bits (608), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 113/204 (55%), Positives = 146/204 (71%), Gaps = 4/204 (1%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRIS--KSCDFNNAI 60
I + LGAGQ+VG+SC++V+I K +MFDCGMHM Y D R++PDF+ I+ I
Sbjct: 4 IRIVPLGAGQDVGRSCILVSIGNKNVMFDCGMHMGYQDARRFPDFNYITGGDQTTLTPHI 63
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ- 119
D ++I+HFHLDH GALP+ +E GY GPIYMT PT+ + PI+LED+RKV+ R E
Sbjct: 64 DAVIISHFHLDHCGALPYMSEQVGYEGPIYMTMPTKVICPILLEDFRKVVTKRSAGAETN 123
Query: 120 -FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDY 178
FTS+ I CM+KV V L Q + VD +L I+AYYAGHVLGAAMF VGD +++YTGD+
Sbjct: 124 FFTSEMIKNCMRKVEIVGLHQVINVDDELSIKAYYAGHVLGAAMFKITVGDESVLYTGDF 183
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
NMTPDRHLGAA DR + +LI+E
Sbjct: 184 NMTPDRHLGAAWADRCKPTVLISE 207
>gi|119576637|gb|EAW56233.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_b
[Homo sapiens]
Length = 329
Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 109/195 (55%), Positives = 145/195 (74%), Gaps = 22/195 (11%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQ+ KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQI----------------------KVGSESVVYTGDYNMTPDRHLG 166
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 167 AAWIDKCRPNLLITE 181
>gi|390358942|ref|XP_001200107.2| PREDICTED: uncharacterized protein LOC763955 [Strongylocentrotus
purpuratus]
Length = 1471
Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats.
Identities = 104/183 (56%), Positives = 140/183 (76%), Gaps = 5/183 (2%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQ+VG+SC+++TI K IM DCGMHM +ND R++PDFS I+K+ + +D ++I+HF
Sbjct: 114 GAGQDVGRSCILLTIGSKNIMLDCGMHMGFNDERRFPDFSYINKNGRLTDHLDAVIISHF 173
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP +EI GY+GPIYMT PT+A+ PI+LEDYRK+ V+++GE FTS I +C
Sbjct: 174 HLDHCGALPHMSEIVGYDGPIYMTQPTKAICPILLEDYRKITVEKKGETNFFTSAMIKDC 233
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYT--GDY---NMTPD 183
MKKV+ V+L Q +QVD +L+I+AYYAGHVLGA MF+ KVG ++VYT DY ++P
Sbjct: 234 MKKVVVVNLHQIIQVDDELEIKAYYAGHVLGAGMFHIKVGQQSVVYTISDDYYNGELSPQ 293
Query: 184 RHL 186
R L
Sbjct: 294 RAL 296
>gi|10435258|dbj|BAB14541.1| unnamed protein product [Homo sapiens]
Length = 278
Score = 235 bits (600), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 109/195 (55%), Positives = 145/195 (74%), Gaps = 22/195 (11%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQ+ KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQI----------------------KVGSESVVYTGDYNMTPDRHLG 166
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 167 AAWIDKCRPNLLITE 181
>gi|297279172|ref|XP_001092173.2| PREDICTED: integrator complex subunit 11 isoform 3 [Macaca mulatta]
Length = 579
Score = 234 bits (596), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 104/163 (63%), Positives = 135/163 (82%)
Query: 40 DHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALA 99
R++PDFS I+++ + +DC++I+HFHLDH GALP+F+E+ GY+GPIYMT+PT+A+
Sbjct: 20 SQRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAIC 79
Query: 100 PIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLG 159
PI+LEDYRK+ VD++GE FTS I +CMKKV+AV L QTVQVD +L+I+AYYAGHVLG
Sbjct: 80 PILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLG 139
Query: 160 AAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
AAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 140 AAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 182
>gi|242013971|ref|XP_002427672.1| Endoribonuclease YSH1, putative [Pediculus humanus corporis]
gi|212512102|gb|EEB14934.1| Endoribonuclease YSH1, putative [Pediculus humanus corporis]
Length = 572
Score = 233 bits (593), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 110/195 (56%), Positives = 142/195 (72%), Gaps = 24/195 (12%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC+++ +FS IS N IDC++I+H
Sbjct: 10 LGAGQDVGRSCILL------------------------NFSFISPEGPITNFIDCVIISH 45
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ TE+ GYNGPIYMT+PT+A++PI+LED RK+ V+++GEV FTS I +
Sbjct: 46 FHLDHCGALPYLTEMVGYNGPIYMTHPTKAISPILLEDMRKISVEKKGEVNFFTSQMIKD 105
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKVI V L Q++ VD L+I+AYYAGHVLGAAMF+ +VG+ ++VYTGDYNMTPDRHLG
Sbjct: 106 CMKKVITVTLHQSIMVDSQLEIKAYYAGHVLGAAMFWIRVGNLSVVYTGDYNMTPDRHLG 165
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + DLLITE
Sbjct: 166 AAWIDKCRPDLLITE 180
>gi|402590428|gb|EJW84358.1| RNA-metabolising metallo-beta-lactamase [Wuchereria bancrofti]
Length = 579
Score = 232 bits (591), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 102/175 (58%), Positives = 136/175 (77%), Gaps = 1/175 (0%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
M DCGMHM Y+D R++PDFS I+ ++DC++ITHFHLDH G+LP +E+ GY+GP
Sbjct: 1 MLDCGMHMGYSDERRFPDFSFINGGGSLTESLDCVIITHFHLDHCGSLPHMSEVVGYDGP 60
Query: 89 IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQ 148
IYMTYPT+A+AP++LEDYRKV + +G+ FTS I CMKKVIA+++ + + VD +L
Sbjct: 61 IYMTYPTKAIAPVLLEDYRKVQTEFKGDKNFFTSQMIKNCMKKVIAINIHEKIDVDNELS 120
Query: 149 IRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDR-LQLDLLITE 202
IRA+YAGHVLGAAMF VG +++YTGD+N TPDRHLGAAR++ L+ DLLI+E
Sbjct: 121 IRAFYAGHVLGAAMFQIMVGSESVLYTGDFNTTPDRHLGAARVEPGLKPDLLISE 175
>gi|332030612|gb|EGI70300.1| Integrator complex subunit 11 [Acromyrmex echinatior]
Length = 536
Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 103/162 (63%), Positives = 129/162 (79%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V++ GK IM DCGMHM +ND R++PDFS I N IDC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDERRFPDFSYIVPEGPATNYIDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+FTE+ GY GPIYMT+PT+A+API+LED RKV V+R+GE FTS
Sbjct: 64 VIISHFHLDHCGALPYFTEMVGYTGPIYMTHPTKAIAPILLEDMRKVAVERKGESNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFY 164
I +CMKKVIAV L Q+V VD +L+I+AYYAGHVLGAAMF+
Sbjct: 124 QMIKDCMKKVIAVTLHQSVMVDSELEIKAYYAGHVLGAAMFW 165
>gi|159487337|ref|XP_001701679.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280898|gb|EDP06654.1| predicted protein [Chlamydomonas reinhardtii]
Length = 460
Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 100/181 (55%), Positives = 128/181 (70%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
L GAGQ+VG+SC +V + G+ +MFDCG H + D R++P+F +S++ F ID +VI
Sbjct: 3 LPAGAGQDVGRSCCIVRMAGRTVMFDCGAHFGFRDARRFPEFGLLSRAGRFTELIDALVI 62
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
THFH+DHIGALP+FTE+CGY GP+ MTYPT A+APIMLEDY KV DR GEV +T H+
Sbjct: 63 THFHIDHIGALPYFTEVCGYRGPVLMTYPTFAMAPIMLEDYVKVNADRPGEVLPYTEQHV 122
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
+C+++V AVDL Q V V L +YAGHVLGAAM G +YTGD+N PDRH
Sbjct: 123 RDCLRRVTAVDLHQVVAVAPGLSFTFHYAGHVLGAAMVTMTAGHLTALYTGDFNSAPDRH 182
Query: 186 L 186
L
Sbjct: 183 L 183
>gi|403337788|gb|EJY68117.1| Integrator complex subunit 11 [Oxytricha trifallax]
Length = 771
Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats.
Identities = 110/222 (49%), Positives = 146/222 (65%), Gaps = 22/222 (9%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKS----CDF 56
M I + LGAGQ+VG+SCV+V + G+R+MFDCG+HM + +Q+PDF + S DF
Sbjct: 1 MVIKVIPLGAGQDVGRSCVIVELGGRRLMFDCGIHMV--NQQQFPDFHFLQGSQQQPLDF 58
Query: 57 NNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV------- 109
N IDC++ITHFHLDH GAL +FTE GY+GPI T PT+A+ P+MLED+RKV
Sbjct: 59 TNHIDCVLITHFHLDHCGALTYFTEGVGYHGPILATPPTKAIIPLMLEDFRKVSSMQQGQ 118
Query: 110 ---------LVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGA 160
+ + FTSD I C+ K+ + L +T + D+++ AYYAGHVLGA
Sbjct: 119 KGGGQGSGGNQNSMNQDTAFTSDMIKACIAKISTIQLHETQVIKGDIKVTAYYAGHVLGA 178
Query: 161 AMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
MFY + ++VYTGDYNMT DRHLGAA ID+L+ D+ ITE
Sbjct: 179 CMFYVECNGESVVYTGDYNMTADRHLGAAWIDKLRPDVCITE 220
>gi|209875817|ref|XP_002139351.1| RNA-metabolising metallo-beta-lactamase family protein
[Cryptosporidium muris RN66]
gi|209554957|gb|EEA05002.1| RNA-metabolising metallo-beta-lactamase family protein
[Cryptosporidium muris RN66]
Length = 797
Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats.
Identities = 110/225 (48%), Positives = 151/225 (67%), Gaps = 25/225 (11%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCD---FN 57
M I LGAGQ+VG+SC++V I K +M DCGMHM Y D R+YPDF+ IS S D N
Sbjct: 1 MPITVTPLGAGQDVGRSCILVRIYEKVVMLDCGMHMGYKDDRRYPDFTLISSSLDPVVIN 60
Query: 58 NAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEV 117
+ +D +VI+H+HLDH GALP+FTE GY+GPI MTYPT+A++PI+L D KV+ +++ +
Sbjct: 61 SLVDVVVISHYHLDHCGALPYFTEKIGYSGPIIMTYPTKAVSPILLADCCKVM-EQKNIL 119
Query: 118 EQFTSD--------------------HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHV 157
+F SD + +CM+KV A+ L QT+ V+ + I YYAGHV
Sbjct: 120 SKFGSDINTESTDILKPVDPQHFSVGDVWKCMEKVTAIQLHQTISVN-GINITPYYAGHV 178
Query: 158 LGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
LGA+MF+ +VG+ ++VYTGDYNM DRHLG A I +L D+L++E
Sbjct: 179 LGASMFHVEVGNESIVYTGDYNMVRDRHLGPASIKKLFPDVLLSE 223
>gi|302846726|ref|XP_002954899.1| hypothetical protein VOLCADRAFT_65253 [Volvox carteri f.
nagariensis]
gi|300259874|gb|EFJ44098.1| hypothetical protein VOLCADRAFT_65253 [Volvox carteri f.
nagariensis]
Length = 477
Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 99/181 (54%), Positives = 127/181 (70%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQ+VG+SC +V + G+ +MFDCG H + D R++P+F +S++ F ID +VITHF
Sbjct: 19 GAGQDVGRSCCIVRMAGRTVMFDCGAHFGFRDARRFPEFGLLSRAGRFTEIIDAVVITHF 78
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
H DH+GALP+FTEICGY GPI MTYPT A+APIML DY KV DR GE + H+ +C
Sbjct: 79 HTDHLGALPYFTEICGYRGPILMTYPTFAIAPIMLADYVKVNADRPGERLPYNEQHVRDC 138
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
+++V AVDL Q V V L +YAGHVLGAAM + G +YTGD+N +PDRHLG
Sbjct: 139 LRRVTAVDLHQVVVVAPGLSFTFHYAGHVLGAAMVHMTAGHLTALYTGDFNSSPDRHLGP 198
Query: 189 A 189
A
Sbjct: 199 A 199
>gi|67624341|ref|XP_668453.1| ENSANGP00000013258 [Cryptosporidium hominis TU502]
gi|54659666|gb|EAL38233.1| ENSANGP00000013258 [Cryptosporidium hominis]
Length = 750
Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats.
Identities = 106/223 (47%), Positives = 142/223 (63%), Gaps = 22/223 (9%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCD---FN 57
MAI + LGAGQ+VG+SC++ I K +MFDCGMHM + D R+YPDF IS + D N
Sbjct: 1 MAISIIPLGAGQDVGRSCIIAKIGSKTVMFDCGMHMGFKDERKYPDFRLISATLDPLIIN 60
Query: 58 NAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDR---- 113
ID ++I+H+HLDH GALPFFTE GY GPI MTYPT++++ ++L D K++ +
Sbjct: 61 EYIDLVIISHYHLDHCGALPFFTEKIGYKGPIVMTYPTKSVSSVLLSDCCKIMEQKLLLQ 120
Query: 114 --------------RGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLG 159
E FT + CM+KV A+ L QT+ V ++I YYAGHVLG
Sbjct: 121 KTNADVVPPNETVYNNEYGFFTVSDVWSCMEKVKAIQLHQTI-VISGIKITPYYAGHVLG 179
Query: 160 AAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
A+MF+ +V D ++VYTGD+NM DRHLG A I +L LLI+E
Sbjct: 180 ASMFHVQVSDESIVYTGDFNMVRDRHLGPALIPKLLPSLLISE 222
>gi|269860949|ref|XP_002650191.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
gi|220066365|gb|EED43849.1| cleavage and polyadenylation specificity factor subunit
[Enterocytozoon bieneusi H348]
Length = 501
Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/197 (49%), Positives = 146/197 (74%), Gaps = 3/197 (1%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ++GKSC+VVTI K IMFDCG+H+ YND R+ P+F +++ +D IVI+H
Sbjct: 6 LGAGQDIGKSCIVVTIKNKTIMFDCGIHLGYNDSRKLPNFDYFNENHHGRRPVDIIVISH 65
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FH+DH G+LP+F E +NG I+MT+PT+A PI+LED +K+ + + ++E+ +T++ I
Sbjct: 66 FHIDHCGSLPYFVETTQFNGLIFMTHPTKAALPIVLEDCKKIF-ENKNQMEKPLYTTEQI 124
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
C+ KVIA+++++T +++++ IR YYAGHV+GAAMF+ + D +VYTGD++ PDR+
Sbjct: 125 NNCLSKVIALNMEETYEIEQEFIIRPYYAGHVIGAAMFFVRYLDETVVYTGDFSTIPDRY 184
Query: 186 LGAARIDRLQLDLLITE 202
L AA ID L DLLITE
Sbjct: 185 LRAATIDCLYPDLLITE 201
>gi|66357778|ref|XP_626067.1| CPSF metallobeta-lactamase [Cryptosporidium parvum Iowa II]
gi|46227299|gb|EAK88249.1| CPSF metallobeta-lactamase [Cryptosporidium parvum Iowa II]
Length = 751
Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats.
Identities = 105/223 (47%), Positives = 141/223 (63%), Gaps = 22/223 (9%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCD---FN 57
M I + LGAGQ+VG+SC++ I K +MFDCGMHM + D R+YPDF IS + D N
Sbjct: 3 MTISIIPLGAGQDVGRSCIIAKIGSKTVMFDCGMHMGFKDERKYPDFRLISATLDPLIIN 62
Query: 58 NAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDR---- 113
ID ++I+H+HLDH GALPFFTE GY GPI MTYPT++++ ++L D K++ +
Sbjct: 63 EYIDLVIISHYHLDHCGALPFFTEKIGYKGPIVMTYPTKSVSSVLLSDCCKIMEQKLLLQ 122
Query: 114 --------------RGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLG 159
E FT + CM+KV A+ L QT+ V ++I YYAGHVLG
Sbjct: 123 KTNVDVAPPNETVYNNEYGFFTVSDVWSCMEKVKAIQLHQTI-VISGIKITPYYAGHVLG 181
Query: 160 AAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
A+MF+ +V D ++VYTGD+NM DRHLG A I +L LLI+E
Sbjct: 182 ASMFHVQVSDESIVYTGDFNMVRDRHLGPALIPKLLPSLLISE 224
>gi|358333178|dbj|GAA51732.1| integrator complex subunit 11 [Clonorchis sinensis]
Length = 649
Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 96/165 (58%), Positives = 130/165 (78%)
Query: 38 YNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRA 97
+ R++PDFS I+++ + +DC++I+HFHLDH GALP+ TEI GY+GPIYMT+PT+A
Sbjct: 108 FRRQRRFPDFSYITENHSLTDYLDCVIISHFHLDHCGALPYMTEIVGYDGPIYMTHPTKA 167
Query: 98 LAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHV 157
+ PI+L+DYRK+ V+RRGE FTS+ I CM KV V + QTV+VD +L+++A+YAGHV
Sbjct: 168 ICPILLDDYRKITVERRGEQNFFTSEMIYRCMSKVKCVYVHQTVKVDDELELQAFYAGHV 227
Query: 158 LGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
LGAAMF +VG +++YTGDYNMTPDRHLGAA + R D+LITE
Sbjct: 228 LGAAMFLIRVGSQSVLYTGDYNMTPDRHLGAAWVSRCCPDILITE 272
>gi|339244969|ref|XP_003378410.1| putative metallo-beta-lactamase domain protein [Trichinella
spiralis]
gi|316972680|gb|EFV56345.1| putative metallo-beta-lactamase domain protein [Trichinella
spiralis]
Length = 562
Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 96/200 (48%), Positives = 128/200 (64%), Gaps = 33/200 (16%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I + LGAGQEVG+SC++VTI GK +M DCGMHM +ND R++PDFS I++ ++ IDC
Sbjct: 4 IKIVPLGAGQEVGRSCILVTIGGKNVMLDCGMHMGFNDERRFPDFSYITQKGKLDDFIDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+ TE+ GYNGPIYMT PT+A+ P++LED+RKV V R + FTS
Sbjct: 64 VIISHFHLDHCGALPYMTEMVGYNGPIYMTIPTKAIVPVLLEDFRKVQVKYRNDPFIFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ I +CM KV + L + + GD+NMTP
Sbjct: 124 NMIKDCMNKVKTISLHEELM---------------------------------GDFNMTP 150
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLG A IDR + D+LI+E
Sbjct: 151 DRHLGPAEIDRCRPDVLISE 170
>gi|449686516|ref|XP_002164154.2| PREDICTED: integrator complex subunit 11-like [Hydra
magnipapillata]
Length = 526
Score = 202 bits (513), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 85/141 (60%), Positives = 117/141 (82%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I + LGAGQ+VG+SC++VT+ GK IM DCGMHM YND R++PDF+ I+K+ + IDC
Sbjct: 4 IKVVPLGAGQDVGRSCIIVTLGGKNIMLDCGMHMGYNDERKFPDFTYIAKTGPYTPHIDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+FTE+CGY+GPIYMT+PT+A+ PI+LED+RK+ V+R+G+ + FTS
Sbjct: 64 LIISHFHLDHCGALPYFTEMCGYDGPIYMTHPTKAICPILLEDFRKIQVERKGDSDFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQV 143
+I +CMKKVI V+L Q VQ+
Sbjct: 124 QNIKDCMKKVIPVNLHQCVQL 144
>gi|146170679|ref|XP_001017643.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila]
gi|146145062|gb|EAR97398.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila SB210]
Length = 675
Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats.
Identities = 100/227 (44%), Positives = 147/227 (64%), Gaps = 28/227 (12%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCD------F 56
I+ LGAGQ+VG+SC+++ I K IM DCG+HM ND +YPDF +I + + +
Sbjct: 10 IEVYPLGAGQDVGRSCILIKIYDKIIMLDCGLHMGVNDLTRYPDFEKIKQIWNIPEKRKW 69
Query: 57 NNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGE 116
+ ID ++I+HFHLDHIGALP+FTEI Y+GPIYMT PT+AL P M ED+RKV+ + + +
Sbjct: 70 DQIIDLVLISHFHLDHIGALPYFTEIYNYDGPIYMTSPTKALLPYMCEDFRKVITESQKK 129
Query: 117 ------VEQ---------------FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAG 155
+ Q +T ++I +C +K + L +T+ V+ ++I+ YYAG
Sbjct: 130 EFTDDSIPQTPAQKIINDSRYPLIYTQENIQKCFQKAKTIQLLETIDVN-GIKIKPYYAG 188
Query: 156 HVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
HVLGA MF + + +VYTGD++ DRHLGAA I++++ DLLI+E
Sbjct: 189 HVLGACMFMIEYRNVKVVYTGDFHSNADRHLGAAWIEKVKPDLLISE 235
>gi|340509014|gb|EGR34593.1| hypothetical protein IMG5_006210 [Ichthyophthirius multifiliis]
Length = 456
Score = 199 bits (507), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/217 (46%), Positives = 139/217 (64%), Gaps = 23/217 (10%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDF------NNAID 61
LGAGQEVG+SC+++ I K IM DCG+HM+ D +YPDF +I + +F + ID
Sbjct: 12 LGAGQEVGRSCIIIKIFDKLIMLDCGLHMSMTDQTRYPDFEKIKQKFNFPANTQYTDIID 71
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-- 119
++I+HFHLDHIGALP+F+EI Y+GPIYMT PT+AL P M EDYRKV+ D +
Sbjct: 72 LVLISHFHLDHIGALPYFSEIYQYDGPIYMTAPTKALFPYMCEDYRKVISDTYKKENMID 131
Query: 120 --------------FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYA 165
++ ++I +KV + L +T+ V+ ++I+ YYAGHVLGA MF
Sbjct: 132 DNNNNDQLQKMPFVYSQENIQNSFQKVQTIQLLETIDVN-GIKIKPYYAGHVLGACMFLI 190
Query: 166 KVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
+ +VYTGD++ DRHLGAA ID++ DLLI+E
Sbjct: 191 EYKGIKVVYTGDFHSNADRHLGAAWIDKINPDLLISE 227
>gi|297737628|emb|CBI26829.3| unnamed protein product [Vitis vinifera]
Length = 686
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 122/257 (47%), Positives = 144/257 (56%), Gaps = 55/257 (21%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
MAI+CLVLGAGQEVGKSC VVTINGKRIMFDCGMHM Y DHR++PDFS ISKS DFN AI
Sbjct: 1 MAIECLVLGAGQEVGKSCAVVTINGKRIMFDCGMHMGYLDHRRFPDFSLISKSADFNTAI 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTY-PTRALAPIMLEDYR------------ 107
DCIVITHFHLDH+GALP+FTE+CGY+GPIYMT P + A + YR
Sbjct: 61 DCIVITHFHLDHVGALPYFTEVCGYSGPIYMTVIPKQGGAVYSVRGYRFGKQKDINGENL 120
Query: 108 -------KVLVDRRGE----VEQFTSDHIAECMKKVIAVDLKQT---VQVDKDLQIRAYY 153
K +R GE E D M ++ +++ ++ L Y+
Sbjct: 121 RGSSGAIKGERERSGEGGARQEGAEPDGPLGHMTPLVPPPVRRVGLGIRGPDSLWSVIYF 180
Query: 154 AGHVLGA------------------AMFYAKVGDSAMVYT--GDYNM--------TPDRH 185
G + A + V +AM Y GD M TPDRH
Sbjct: 181 FGFYIAVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRH 240
Query: 186 LGAARIDRLQLDLLITE 202
LGAA+IDRLQLDLLITE
Sbjct: 241 LGAAQIDRLQLDLLITE 257
>gi|359472593|ref|XP_002281277.2| PREDICTED: uncharacterized protein LOC100261060 [Vitis vinifera]
Length = 2299
Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats.
Identities = 79/92 (85%), Positives = 86/92 (93%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
MAI+CLVLGAGQEVGKSC VVTINGKRIMFDCGMHM Y DHR++PDFS ISKS DFN AI
Sbjct: 1 MAIECLVLGAGQEVGKSCAVVTINGKRIMFDCGMHMGYLDHRRFPDFSLISKSADFNTAI 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMT 92
DCIVITHFHLDH+GALP+FTE+CGY+GPIYMT
Sbjct: 61 DCIVITHFHLDHVGALPYFTEVCGYSGPIYMT 92
Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats.
Identities = 68/70 (97%), Positives = 70/70 (100%)
Query: 133 IAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARID 192
IAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGD+AMVYTGDYNMTPDRHLGAA+ID
Sbjct: 1382 IAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAAQID 1441
Query: 193 RLQLDLLITE 202
RLQLDLLITE
Sbjct: 1442 RLQLDLLITE 1451
>gi|387594760|gb|EIJ89784.1| cleavage and polyadenylation specificity factor 3 [Nematocida
parisii ERTm3]
gi|387596392|gb|EIJ94013.1| cleavage and polyadenylation specificity factor 3 [Nematocida
parisii ERTm1]
Length = 696
Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats.
Identities = 96/197 (48%), Positives = 126/197 (63%), Gaps = 7/197 (3%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
L LGAG EVG+SCVV G +MFDCG+H AY P F I + ID I++
Sbjct: 13 LPLGAGSEVGRSCVVTKFRGVTVMFDCGVHPAYTGVSSLPFFDLIDPA-----EIDVILV 67
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
THFHLDH GALP+FTE G+ G IYMT+PTRA+ +L DY +V + E + FT +
Sbjct: 68 THFHLDHAGALPYFTERSGFKGKIYMTHPTRAIFRWLLNDYVRV-SNVSSENDLFTEKEL 126
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
A+C K+I +D Q + + K++ I AY AGHVLGAAMF K D +++YTGDY+ DRH
Sbjct: 127 AQCYDKIIPIDYGQEIPL-KNITIIAYNAGHVLGAAMFLVKNEDISLLYTGDYSREEDRH 185
Query: 186 LGAARIDRLQLDLLITE 202
L AA I + +D+LI+E
Sbjct: 186 LKAAVIPPMPIDILISE 202
>gi|221055463|ref|XP_002258870.1| RNA-metabolising metallo-beta-lactamase [Plasmodium knowlesi strain
H]
gi|193808940|emb|CAQ39643.1| RNA-metabolising metallo-beta-lactamase,putative [Plasmodium
knowlesi strain H]
Length = 914
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 96/269 (35%), Positives = 140/269 (52%), Gaps = 75/269 (27%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFS------------------ 48
VLGAGQ VG+SCV+V + +R+MFDCG H+ Y D R+YP+F+
Sbjct: 13 VLGAGQTVGRSCVIVELENRRVMFDCGSHLGYKDERKYPNFNILVSNDTSSVEKEKGMGE 72
Query: 49 --------------------------RISKSCDFNNAIDCIVITHFHLDHIGALPFFTEI 82
I K N IDC++I+HFH+DHIGALPFFTEI
Sbjct: 73 GNMYEHHLNTEVNITIVNSSISEKEKLIEKLSRINEIIDCVIISHFHMDHIGALPFFTEI 132
Query: 83 CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF---------------------- 120
Y G I M+YPT+AL+PI+L D +V D + E + F
Sbjct: 133 LKYRGTIIMSYPTKALSPILLLDGCRV-ADLKWEKKNFERQIKLLNEKSDELLNYNISSL 191
Query: 121 -------TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMV 173
+ +HI C+ KV+ + + +T ++ ++ I YYAGHVLGA ++ +V + +++
Sbjct: 192 KKDPWNISEEHIYSCIGKVVGLQINETYEMG-NMSITPYYAGHVLGACIYKIEVNNFSVI 250
Query: 174 YTGDYNMTPDRHLGAARIDRLQLDLLITE 202
YTGDYN PD+HLG+ +I L ++ I+E
Sbjct: 251 YTGDYNTVPDKHLGSTKIPSLNPEIFISE 279
>gi|68077031|ref|XP_680435.1| cleavage and polyadenylation specificity factor protein [Plasmodium
berghei strain ANKA]
gi|56501360|emb|CAH96636.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium berghei]
Length = 967
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 94/262 (35%), Positives = 142/262 (54%), Gaps = 67/262 (25%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDF---------- 56
VLGAGQ VG+SCV+V + +RIMFDCG H+ Y D R+YP+F+ + + +
Sbjct: 14 VLGAGQTVGRSCVIVELENRRIMFDCGSHVGYKDERKYPNFNLLVGNSNLEGAPKIDEEN 73
Query: 57 ----------------------------NNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
N IDC++I+HFH+DHIGALPFFTEI Y G
Sbjct: 74 NLNVEVNISIVNSNIADKEKLINNLKKINEMIDCVIISHFHMDHIGALPFFTEILQYKGT 133
Query: 89 IYMTYPTRALAPIM----------------LEDYRKVLVDRRGEVEQF------------ 120
I M+YPT+AL+P++ LE K+L ++ ++ +
Sbjct: 134 IIMSYPTKALSPVLLLDGCKISDMKWEKKNLEKQIKMLNEKSDDLLNYNINCLKKDPWNI 193
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T ++I C+ KV+ + + +T ++ D+ I YYAGHVLGA M+ +V + +++YTGDYN
Sbjct: 194 TEENIYNCINKVVGLQVNETYELG-DISITPYYAGHVLGACMYRLEVNNISVIYTGDYNT 252
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
PD+HLG+ +I L ++ I+E
Sbjct: 253 IPDKHLGSTKIPVLTPEIFISE 274
>gi|389583415|dbj|GAB66150.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium cynomolgi strain B]
Length = 713
Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats.
Identities = 98/269 (36%), Positives = 140/269 (52%), Gaps = 75/269 (27%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDF------------------- 47
VLGAGQ VG+SCV+V + +R+MFDCG H+ Y D R+YP+F
Sbjct: 13 VLGAGQTVGRSCVIVELENRRVMFDCGSHLGYKDERKYPNFNILVSNDPYAVEREKGMGE 72
Query: 48 ------------------SRISKS-------CDFNNAIDCIVITHFHLDHIGALPFFTEI 82
S IS+ N IDC++I+HFH+DHIGALPFFTEI
Sbjct: 73 ANIYEHNLNTEVNITIVNSSISEKEKLIKNLSRINEIIDCVIISHFHMDHIGALPFFTEI 132
Query: 83 CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF---------------------- 120
Y G I M+YPT+AL+P +L D +V D + E + F
Sbjct: 133 LKYRGTIIMSYPTKALSPTLLLDGCRV-ADIKWEKQNFERQIKLLNEKSDELLNYNISSL 191
Query: 121 -------TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMV 173
+ DHI C+ KV+ + + +T ++ ++ I YYAGHVLGA +F +V + +++
Sbjct: 192 KKDPWNISEDHIYSCIGKVVGLQINETFEMG-NMSITPYYAGHVLGACIFKIEVNNFSVI 250
Query: 174 YTGDYNMTPDRHLGAARIDRLQLDLLITE 202
YTGDYN PD+HLG+ +I L ++ I+E
Sbjct: 251 YTGDYNTVPDKHLGSTKIPSLTPEIFISE 279
>gi|399216826|emb|CCF73513.1| unnamed protein product [Babesia microti strain RI]
Length = 646
Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 101/251 (40%), Positives = 140/251 (55%), Gaps = 58/251 (23%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFS---------------RIS 51
VLGAGQ+VG+SCV+VTI G+++MFDCG H YND+R+YP FS +
Sbjct: 9 VLGAGQDVGRSCVIVTIGGRKVMFDCGAHSGYNDNRRYPLFSLLESKESPITVNSSNKTE 68
Query: 52 KSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV-- 109
K +F+ IDCI++THFH+DH GALP+FTE GY+GPI M+YPT+AL PI+L+D +V
Sbjct: 69 KISNFD--IDCIILTHFHIDHCGALPYFTENLGYDGPILMSYPTKALTPILLKDSCRVQS 126
Query: 110 ------------------LVDRRG-----EVEQFTSDHIAECMKKVIAVDLKQTVQVDKD 146
L++ E FT + + + + I + L + D
Sbjct: 127 LKHTKKNPIMDSDKSFMALLNENPAASYEESLNFTEQSVEKSLSRAIPLQLHSDTHIG-D 185
Query: 147 LQIRAYYAGHVLGAAMFYAKVGDSAMVYT---------------GDYNMTPDRHLGAARI 191
L IR YYAGHVLGA++F + +VYT GD+N D+HLG A+I
Sbjct: 186 LTIRPYYAGHVLGASIFAVRYKSQLVVYTGTNSFNAIRQKTIQLGDFNTMSDKHLGPAKI 245
Query: 192 DRLQLDLLITE 202
+L+ D+LI E
Sbjct: 246 PKLEPDVLICE 256
>gi|82704800|ref|XP_726704.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23482224|gb|EAA18269.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 954
Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats.
Identities = 94/262 (35%), Positives = 142/262 (54%), Gaps = 67/262 (25%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDF---------- 56
VLGAGQ VG+SCV+V + +RIMFDCG H+ Y D R+YP+F+ + + +
Sbjct: 14 VLGAGQTVGRSCVIVELENRRIMFDCGSHVGYKDERKYPNFNLLVGNSNMEGAPKIDEEN 73
Query: 57 ----------------------------NNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
N IDC++I+HFH+DHIGALPFFTEI Y G
Sbjct: 74 NLNVEVNISIVNSNISDKEKLINNLKKINEIIDCVIISHFHMDHIGALPFFTEILQYKGT 133
Query: 89 IYMTYPTRALAPIM----------------LEDYRKVLVDRRGEVEQF------------ 120
I M+YPT+AL+P++ LE K+L ++ ++ +
Sbjct: 134 IIMSYPTKALSPVLLLDGCKISDIKWEKKNLEKQIKMLNEKSDDLLNYNINCIKKDPWNI 193
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T ++I C+ KV+ + + +T ++ D+ I YYAGHVLGA M+ +V + +++YTGDYN
Sbjct: 194 TEENIYNCINKVVGLQVNETYELG-DISITPYYAGHVLGACMYRLEVNNISVIYTGDYNT 252
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
PD+HLG+ +I L ++ I+E
Sbjct: 253 IPDKHLGSTKIPVLTPEIFISE 274
>gi|156096985|ref|XP_001614526.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium vivax Sal-1]
gi|148803400|gb|EDL44799.1| RNA-metabolising metallo-beta-lactamase domain containing protein
[Plasmodium vivax]
Length = 911
Score = 182 bits (463), Expect = 5e-44, Method: Composition-based stats.
Identities = 98/269 (36%), Positives = 140/269 (52%), Gaps = 75/269 (27%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDF------------------- 47
VLGAGQ VG+SCV+V + +R+MFDCG H+ Y D R+YP+F
Sbjct: 13 VLGAGQTVGRSCVIVELENRRVMFDCGSHLGYKDERKYPNFNLLVSSEAHAEEREKEKGE 72
Query: 48 ------------------SRISKSCDF-------NNAIDCIVITHFHLDHIGALPFFTEI 82
S IS+ N IDC++I+HFH+DHIGALPFFTEI
Sbjct: 73 ANIYEHHLNTEVNISIVNSSISEKEKLINNLKRINEMIDCVIISHFHMDHIGALPFFTEI 132
Query: 83 CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF---------------------- 120
Y G I M+YPT+AL+PI+L D +V D + E + F
Sbjct: 133 LKYRGTILMSYPTKALSPILLLDGCRV-ADLKWEKQNFERQIKLLNEKSDELLNYNISSL 191
Query: 121 -------TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMV 173
+ + I C+ KV+ + + +T Q+ ++ I YYAGHVLGA +F +V + +++
Sbjct: 192 KKDPWNISEEQIYSCIGKVVGLQINETFQMG-NMSITPYYAGHVLGACIFKIEVNNFSVI 250
Query: 174 YTGDYNMTPDRHLGAARIDRLQLDLLITE 202
YTGDYN PD+HLG+ +I L ++ I+E
Sbjct: 251 YTGDYNTVPDKHLGSTKIPSLTPEIFISE 279
>gi|85000301|ref|XP_954869.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65303015|emb|CAI75393.1| hypothetical protein, conserved [Theileria annulata]
Length = 663
Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats.
Identities = 105/295 (35%), Positives = 148/295 (50%), Gaps = 95/295 (32%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQY----------------- 44
++D VLGAGQ+VG+SCVVVT KR++FDCG H + D R+Y
Sbjct: 3 SVDITVLGAGQDVGRSCVVVTFPSKRVVFDCGAHCGFVDQRRYPDLQLLGDINEYNHQIQ 62
Query: 45 ---------------PD--FSR-ISKSC---------------------DFNNAIDCIVI 65
PD FS S C + N++DC +I
Sbjct: 63 LMGSVKKEEFEVKSVPDDPFSHDYSDKCAVKQEFDKDIYMKNALQKALRNVTNSVDCSII 122
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLV-------------- 111
+HFHLDH+GALPF TE GY+GPIY++YPTRAL P++L D +V
Sbjct: 123 SHFHLDHVGALPFLTEHIGYSGPIYLSYPTRALCPLLLRDSVQVTSTRTVPDDPNSISSI 182
Query: 112 ------------------DRRGEVEQ------FTSDHIAECMKKVIAVDLKQTVQVDKDL 147
D+R ++E+ +T + +AECMK+ I + L+ T V +L
Sbjct: 183 NASVKSLLNSHTNATFTPDKRRKIEEKADPWGYTLNSVAECMKRSIPLQLRATETVG-NL 241
Query: 148 QIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
+ YYAGHVLGA+MF ++ ++YTGD+N PD+HLG A++ L+ D+LI E
Sbjct: 242 NLVPYYAGHVLGASMFLSECDGFKVLYTGDFNTIPDKHLGPAKVPTLEPDVLICE 296
>gi|70952759|ref|XP_745526.1| cleavage and polyadenylation specificity factor protein [Plasmodium
chabaudi chabaudi]
gi|56525876|emb|CAH78255.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium chabaudi chabaudi]
Length = 327
Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 141/263 (53%), Gaps = 69/263 (26%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFS------------RISKSC 54
VLGAGQ VG+SCV+V + +RIMFDCG H+ Y D R+YP+F+ +I +
Sbjct: 14 VLGAGQTVGRSCVIVELENRRIMFDCGSHVGYKDERKYPNFNLLVGNNNMEGGPKIDEEN 73
Query: 55 DFN--------------------------NAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
+ N IDC++I+HFH+DHIGALPFFTE Y G
Sbjct: 74 NLNVEVNISIVNSNIADKEKLINNLKRINEIIDCVIISHFHMDHIGALPFFTETLQYKGT 133
Query: 89 IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF---------------------------- 120
I M+YPT+AL+P++L D K+ D++ E +
Sbjct: 134 IIMSYPTKALSPVLLLDGCKI-SDQKWEKKNLEKQIKMLNEKSDDLLNYNINRIKKDPWN 192
Query: 121 -TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
T ++I CM KV+ + + +T ++ D+ I YYAGHVLGA M+ +V + +++YTGDYN
Sbjct: 193 ITEENIYNCMNKVVGLQVNETYELG-DISITPYYAGHVLGACMYRLEVNNVSVIYTGDYN 251
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
PD+HLG+ +I L ++ I+E
Sbjct: 252 TIPDKHLGSTKIPVLTPEIFISE 274
>gi|71027091|ref|XP_763189.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350142|gb|EAN30906.1| hypothetical protein TP03_0171 [Theileria parva]
Length = 678
Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats.
Identities = 102/295 (34%), Positives = 145/295 (49%), Gaps = 95/295 (32%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHR------------------- 42
++D VLGAGQ+VG+SC+VVT KR++FDCG H + D R
Sbjct: 3 SVDITVLGAGQDVGRSCIVVTFPSKRVIFDCGAHCGFIDQRRYPDLQLLGDVNEYNYQLQ 62
Query: 43 ----------------------QYPDFSRISKSCD---------------FNNAIDCIVI 65
+Y D I + D N++DC VI
Sbjct: 63 LIESVKKEEFPVKSAPDDPFSHEYSDKGVIKQEFDKDTYMKNALKKALKNVTNSVDCSVI 122
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVL--------------- 110
+HFHLDH+GALPF TE GY+GPIY+TYPTRAL P++L D +V
Sbjct: 123 SHFHLDHVGALPFLTEHIGYSGPIYLTYPTRALCPLLLRDSVQVTSTRTVPDDPNTISSI 182
Query: 111 -----------------VDRRGEVEQ------FTSDHIAECMKKVIAVDLKQTVQVDKDL 147
D+R ++E+ ++ + +AECMK+ I + L+ T V +L
Sbjct: 183 NASVKSLLNCHTNTTYNTDKRRKIEERTDPWGYSLNSVAECMKRSIPLQLRATETVG-NL 241
Query: 148 QIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
+ YYAGHVLGA+MF ++ ++YTGD+N PD+HLG A++ L+ D+LI E
Sbjct: 242 NLVPYYAGHVLGASMFLSECDGFKVLYTGDFNTIPDKHLGPAKVPTLEPDVLICE 296
>gi|378756364|gb|EHY66388.1| cleavage and polyadenylation specificity factor [Nematocida sp. 1
ERTm2]
Length = 692
Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/197 (46%), Positives = 126/197 (63%), Gaps = 7/197 (3%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
L LGAG EVG+SCVV G +MFDCG+H AY P F I + +D I++
Sbjct: 13 LPLGAGSEVGRSCVVTKFQGVTVMFDCGVHPAYTGISSLPFFDLIDPT-----EVDVILV 67
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
THFHLDH GALP+FTE G+ G +YMT+PTRA+ +L DY +V + E + FT +
Sbjct: 68 THFHLDHAGALPYFTERSGFKGKVYMTHPTRAIFRWLLNDYVRV-SNVSSENDLFTEKEL 126
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
++C ++I +D Q + + K++ I AY AGHVLGAAMF K + +++YTGDY+ DRH
Sbjct: 127 SQCYDRIIPIDYGQEITL-KNITIIAYNAGHVLGAAMFLVKNENISLLYTGDYSREEDRH 185
Query: 186 LGAARIDRLQLDLLITE 202
L AA I + +D+LI+E
Sbjct: 186 LKAAVIPPMPIDILISE 202
>gi|14165488|gb|AAH08041.1| CPSF3L protein [Homo sapiens]
gi|18044933|gb|AAH20199.1| CPSF3L protein [Homo sapiens]
Length = 389
Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/160 (48%), Positives = 116/160 (72%), Gaps = 7/160 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKV 167
C+ L +T +L++ Y++ + A Y K+
Sbjct: 129 CI-------LLETFWERMNLKVPIYFSTGLTEKANHYYKL 161
>gi|390367057|ref|XP_784887.2| PREDICTED: integrator complex subunit 11-like, partial
[Strongylocentrotus purpuratus]
Length = 355
Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 75/130 (57%), Positives = 101/130 (77%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I + LGAGQ+VG+SC+++TI K IM DCGMHM +ND R++PDFS I+K+ + +D
Sbjct: 4 IRIVPLGAGQDVGRSCILLTIGSKNIMLDCGMHMGFNDERRFPDFSYINKNGRLTDHLDA 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP +EI GY+GPIYMT PT+A+ PI+LEDYRK+ V+++GE FTS
Sbjct: 64 VIISHFHLDHCGALPHMSEIVGYDGPIYMTQPTKAICPILLEDYRKITVEKKGETNFFTS 123
Query: 123 DHIAECMKKV 132
I +CMKKV
Sbjct: 124 AMIKDCMKKV 133
>gi|428671580|gb|EKX72498.1| cleavage and polyadenylation specificity factor, putative [Babesia
equi]
Length = 656
Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 93/271 (34%), Positives = 138/271 (50%), Gaps = 76/271 (28%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSC------------ 54
+LGAGQ+VG+SCV++T +R++ DCG H + DH++YP +
Sbjct: 5 ILGAGQDVGRSCVLLTFPTRRLILDCGAHCGFVDHKRYPALQMLGPDGVYEHQLEILEKT 64
Query: 55 ------------------------------------DFNNAIDCIVITHFHLDHIGALPF 78
D N +DC +I+HFHLDH+GALPF
Sbjct: 65 YLGSQTERQGGASDGPIEDPTQKAVLMRVAMERTLNDLTNTLDCAIISHFHLDHVGALPF 124
Query: 79 FTEICGYNGPIYMTYPTRALAPIMLEDYRKV---------------LVDRRGEVEQ---- 119
TE +NGP+YMT+PT+AL+PI+L D +V L++ R + E
Sbjct: 125 LTEQLKFNGPVYMTWPTKALSPILLRDSAQVTAQRTVKQDKENLRNLLNMRTDSESHKRR 184
Query: 120 --------FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA 171
+ E +KK IA+ L++T + +++I YYAGHVLGAAMF+ + +
Sbjct: 185 KGADDPWGYNLGPATESVKKAIALQLQETRHIG-NIKITPYYAGHVLGAAMFHVECDGFS 243
Query: 172 MVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
++YTGD+N PD+HLG A++ RL D+LI E
Sbjct: 244 VLYTGDFNTVPDKHLGPAKVPRLCPDVLICE 274
>gi|156082980|ref|XP_001608974.1| RNA-metabolising metallo-beta-lactamase and metallo-beta-lactamase
superfamily domain containing protein [Babesia bovis
T2Bo]
gi|154796224|gb|EDO05406.1| RNA-metabolising metallo-beta-lactamase and metallo-beta-lactamase
superfamily domain containing protein [Babesia bovis]
Length = 760
Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 107/294 (36%), Positives = 140/294 (47%), Gaps = 94/294 (31%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDH------------RQY----- 44
+ +LGAGQ+VG+SCVVVT +RI+FDCG H + DH R+Y
Sbjct: 3 TVKITMLGAGQDVGRSCVVVTFPSRRILFDCGAHCGFIDHRRYPELQLLGDSRKYNTYYH 62
Query: 45 ----------------PDFSRISKSCDFNN---------------------------AID 61
P S S D NN ID
Sbjct: 63 EHMRSMVEGDEEVKSDPGSSDRGSSPDGNNMTPRERNYNVASSMKYALKKSLNDITSNID 122
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDR-------- 113
C +I+HFHLDHIGALPF TE GY GP++MTYPTR L PIML D +V+ R
Sbjct: 123 CAIISHFHLDHIGALPFLTEHLGYKGPVFMTYPTRGLGPIMLRDSAQVVTSRFRDAIETE 182
Query: 114 ---RG--------------EVEQ--------FTSDHIAECMKKVIAVDLKQTVQVDKDLQ 148
RG EQ +T D +A+ + + + LK + Q +++
Sbjct: 183 SSTRGASILLNRNKKRKPLTAEQLDRFDPWGYTVDCVADSLSRAHVMQLKSS-QTLGNMR 241
Query: 149 IRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
I YYAGHVLGAAMF + +++YTGD+NMTPD+HLG AR+ L D++I E
Sbjct: 242 ITPYYAGHVLGAAMFLVECDGISVLYTGDFNMTPDKHLGPARVPSLNPDIMICE 295
>gi|19074699|ref|NP_586205.1| similarity to HYPOTHETICAL PROTEIN Y162_METJA [Encephalitozoon
cuniculi GB-M1]
Length = 730
Score = 166 bits (421), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 123/202 (60%), Gaps = 11/202 (5%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP--DFSRISKSCDFNNAI 60
I + LGAG EVG+SCV+V G+ IM DCG+H AY P D +SK I
Sbjct: 94 IKIMPLGAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGMASLPFLDLVDLSK-------I 146
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D + ITHFHLDH ALPF TE + G +YMT+PT+A+ +L DY ++ ++ + + +
Sbjct: 147 DAVFITHFHLDHAAALPFLTEKTSFRGKVYMTHPTKAILKWLLNDYIRI-INASSDTDFY 205
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T + +C ++I +D Q V V K ++++A AGHVLGAAMF ++ S ++YTGD++
Sbjct: 206 TETDLVKCYDRIIPIDYHQEVNV-KGIKVKALNAGHVLGAAMFLVEIEKSKILYTGDFSR 264
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL AA ++D LITE
Sbjct: 265 EEDRHLKAAESPGCKIDALITE 286
>gi|392512873|emb|CAD25809.2| similarity to HYPOTHETICAL PROTEIN Y162_METJA [Encephalitozoon
cuniculi GB-M1]
Length = 643
Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 123/202 (60%), Gaps = 11/202 (5%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP--DFSRISKSCDFNNAI 60
I + LGAG EVG+SCV+V G+ IM DCG+H AY P D +SK I
Sbjct: 7 IKIMPLGAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGMASLPFLDLVDLSK-------I 59
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D + ITHFHLDH ALPF TE + G +YMT+PT+A+ +L DY ++ ++ + + +
Sbjct: 60 DAVFITHFHLDHAAALPFLTEKTSFRGKVYMTHPTKAILKWLLNDYIRI-INASSDTDFY 118
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T + +C ++I +D Q V V K ++++A AGHVLGAAMF ++ S ++YTGD++
Sbjct: 119 TETDLVKCYDRIIPIDYHQEVNV-KGIKVKALNAGHVLGAAMFLVEIEKSKILYTGDFSR 177
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL AA ++D LITE
Sbjct: 178 EEDRHLKAAESPGCKIDALITE 199
>gi|303391080|ref|XP_003073770.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
gi|303302918|gb|ADM12410.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon intestinalis ATCC 50506]
Length = 696
Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 87/202 (43%), Positives = 123/202 (60%), Gaps = 11/202 (5%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP--DFSRISKSCDFNNAI 60
I + LGAG EVG+SCV+V G+ IM DCG+H AY P D +SK I
Sbjct: 7 IKVMPLGAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGVASLPFLDLVDLSK-------I 59
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D I +THFHLDH ALPF TE + G +YMT+PT+A+ +L DY + L++ + + +
Sbjct: 60 DAIFVTHFHLDHAAALPFLTEKTSFKGKVYMTHPTKAILKWLLNDYIR-LINAASDADFY 118
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T + +C ++I +D Q V V K ++++A AGHVLGAAMF ++ S ++YTGD++
Sbjct: 119 TETDLVKCYDRIIPIDYHQEVNV-KGIKVKALNAGHVLGAAMFLVEIEKSKILYTGDFSR 177
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL AA ++D LITE
Sbjct: 178 EEDRHLKAAESPGCKIDALITE 199
>gi|401827745|ref|XP_003888165.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
gi|392999365|gb|AFM99184.1| putative RNA-processing beta-lactamase-fold exonuclease
[Encephalitozoon hellem ATCC 50504]
Length = 643
Score = 166 bits (419), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 123/202 (60%), Gaps = 11/202 (5%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP--DFSRISKSCDFNNAI 60
I + LGAG EVG+SCV+V G+ IM DCG+H AY P D +SK I
Sbjct: 7 IKIMPLGAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGVASLPFLDLVDLSK-------I 59
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D I ITHFHLDH ALPF TE + G +YMT+PT+A+ +L DY + L++ + + +
Sbjct: 60 DAIFITHFHLDHAAALPFLTEKTSFKGKVYMTHPTKAILKWLLNDYIR-LINAASDADFY 118
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T + +C ++I +D Q V V K ++++A AGHVLGAAMF ++ S ++YTGD++
Sbjct: 119 TETDLVKCYDRIIPIDYHQEVNV-KGIKVKALNAGHVLGAAMFLIEIEKSKVLYTGDFSR 177
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL AA ++D LITE
Sbjct: 178 EEDRHLKAAESPGCKIDALITE 199
>gi|300706475|ref|XP_002995499.1| hypothetical protein NCER_101581 [Nosema ceranae BRL01]
gi|239604633|gb|EEQ81828.1| hypothetical protein NCER_101581 [Nosema ceranae BRL01]
Length = 671
Score = 165 bits (418), Expect = 9e-39, Method: Composition-based stats.
Identities = 80/195 (41%), Positives = 117/195 (60%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SC++++ N K IMFDCG+H A+ P + S +D ITH
Sbjct: 36 LGAGNEVGRSCILISYNNKNIMFDCGVHSAHTGIASLPFLDTVDLS-----TVDACFITH 90
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH LP+ TE + G ++MT+PT+A+ ML DY ++ ++ +V+ +T +
Sbjct: 91 FHLDHAAGLPYLTEKTNFKGKVFMTHPTKAILRWMLNDYVRI-INASSDVDFYTEKDLNN 149
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
C K+I +D Q + ++ +++ AGHVLGAAMF K+ DS M+YTGDY+ DRHL
Sbjct: 150 CYNKIIPIDYHQEINIE-GIKVIGLNAGHVLGAAMFLIKIEDSVMLYTGDYSREEDRHLK 208
Query: 188 AARIDRLQLDLLITE 202
AA ++ LITE
Sbjct: 209 AAESPNCKIHALITE 223
>gi|396082284|gb|AFN83894.1| putative beta-lactamase fold-containing exonuclease
[Encephalitozoon romaleae SJ-2008]
Length = 643
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 88/202 (43%), Positives = 123/202 (60%), Gaps = 11/202 (5%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP--DFSRISKSCDFNNAI 60
I + LGAG EVG+SCV+V G+ IM DCG+H AY P D +SK I
Sbjct: 7 IKIMPLGAGNEVGRSCVIVECGGRTIMLDCGVHPAYTGVASLPFLDLVDLSK-------I 59
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D I ITHFHLDH ALPF TE + G +YMT+PT+A+ +L DY + L++ + + +
Sbjct: 60 DAIFITHFHLDHAAALPFLTEKTSFKGKVYMTHPTKAILKWLLNDYIR-LINAASDADFY 118
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T + +C ++I +D Q V V K ++++A AGHVLGAAMF ++ S ++YTGD++
Sbjct: 119 TESDLIKCYDRIIPIDYHQEVNV-KGIKVKALNAGHVLGAAMFLIEIEKSKVLYTGDFSR 177
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL AA ++D LITE
Sbjct: 178 EEDRHLKAAESPGCKIDGLITE 199
>gi|397639513|gb|EJK73612.1| hypothetical protein THAOC_04754 [Thalassiosira oceanica]
Length = 454
Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 126/207 (60%), Gaps = 17/207 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG+GQEVG+SC ++T G ++ DCG+H Y+ P F R+ ++D +++TH
Sbjct: 10 LGSGQEVGRSCHLLTFRGTTVLLDCGIHPGYDGMAGLPFFDRVDPE-----SVDVLLVTH 64
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRG--------EVEQ 119
FHLDH +LP+FTE G+ G ++MT+PT+A+ ++L DY +++ + G E
Sbjct: 65 FHLDHAASLPYFTERTGFRGRVFMTHPTKAVIRLLLGDYLRLMAVKHGSSGGELNPEDVL 124
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVD--KDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
+T + C+ K+ +D QT+ ++ L+ A AGHVLGAAMFY ++G +++YTGD
Sbjct: 125 YTEAELQSCVDKIELIDYHQTIDLNLPSGLKFHALNAGHVLGAAMFYIEIGGRSVLYTGD 184
Query: 178 YNMTPDRHLGAARIDRLQL--DLLITE 202
Y+M DRHL AA + R D+LI E
Sbjct: 185 YSMEEDRHLMAAELPRYHASPDVLIVE 211
>gi|429963183|gb|ELA42727.1| hypothetical protein VICG_00042 [Vittaforma corneae ATCC 50505]
Length = 642
Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats.
Identities = 82/197 (41%), Positives = 117/197 (59%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP--DFSRISKSCDFNNAIDCIVI 65
LGAG EVG+SC+ + + I+ DCG+H AY P D +SK ID I++
Sbjct: 12 LGAGNEVGRSCIHLKYKNREILLDCGVHPAYTGVSSLPFLDLVDLSK-------IDAILV 64
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
THFHLDH ALPF TE + G +YMT+PT+A+ +L DY +V ++ E + +T +
Sbjct: 65 THFHLDHAAALPFLTEKTEFKGKVYMTHPTKAILKWLLNDYIRV-INSSSEQDFYTEQDL 123
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
C K+I +D Q + ++ +++ A AGHVLGAAMF ++ S ++YTGD++ DRH
Sbjct: 124 QSCYDKIIPIDYHQQINIE-GIKVTALNAGHVLGAAMFLLEIEKSKILYTGDFSREEDRH 182
Query: 186 LGAARIDRLQLDLLITE 202
L AA LD LITE
Sbjct: 183 LKAAESPGCCLDALITE 199
>gi|223997482|ref|XP_002288414.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975522|gb|EED93850.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 557
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 125/208 (60%), Gaps = 18/208 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG+GQEVG+SC ++T I+ DCG+H Y+ P F R+ +D ++ITH
Sbjct: 10 LGSGQEVGRSCHLLTFRSTTILLDCGIHPGYDGMAGLPFFDRVDP-----EQVDVLLITH 64
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-------- 119
FHLDH +LP+FTE G+ G I+MT+PT+A+ ++L DY K+++ ++G
Sbjct: 65 FHLDHAASLPYFTERTGFKGRIFMTHPTKAVIRLLLGDYLKLMMMKKGSGGADKDDNQDV 124
Query: 120 -FTSDHIAECMKKVIAVDLKQTVQVD--KDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
+T + C+ K+ +D QT+ ++ L+ A AGHVLGAAMF+ +VG +++YTG
Sbjct: 125 LYTEADLQSCVDKIELIDYHQTIDLNLPSGLKFHALNAGHVLGAAMFFIEVGGRSVLYTG 184
Query: 177 DYNMTPDRHLGAARIDRLQL--DLLITE 202
DY+M DRHL AA + + DLLI E
Sbjct: 185 DYSMEEDRHLMAAELPKYHASPDLLIVE 212
>gi|297837375|ref|XP_002886569.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp.
lyrata]
gi|297332410|gb|EFH62828.1| hypothetical protein ARALYDRAFT_475225 [Arabidopsis lyrata subsp.
lyrata]
Length = 693
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 119/197 (60%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK I+FDCG+H AY+ P F I S +ID ++ITH
Sbjct: 27 LGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPS-----SIDVLLITH 81
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FH+DH +LP+F E +NG ++MT+ T+A+ ++L DY KV + VE F I
Sbjct: 82 FHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKV---SKVSVEDMLFDEQDI 138
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
+ M K+ +D QTV+V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 139 NKSMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRH 197
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+ I E
Sbjct: 198 LRAAELPQFSPDICIIE 214
>gi|18377654|gb|AAL66977.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
Length = 693
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 119/197 (60%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK I+FDCG+H AY+ P F I S +ID ++ITH
Sbjct: 27 LGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPS-----SIDVLLITH 81
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FH+DH +LP+F E +NG ++MT+ T+A+ ++L DY KV + VE F I
Sbjct: 82 FHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKV---SKVSVEDMLFDEQDI 138
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
+ M K+ +D QTV+V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 139 NKSMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRH 197
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+ I E
Sbjct: 198 LRAAELPQFSPDICIIE 214
>gi|15219848|ref|NP_176297.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|30696512|ref|NP_849835.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|79320389|ref|NP_001031215.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|75262219|sp|Q9C952.1|CPSF3_ARATH RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3-I; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit I; Short=AtCPSF73-I;
Short=CPSF 73 kDa subunit I
gi|12323330|gb|AAG51638.1|AC018908_4 putative cleavage and polyadenylation specificity factor;
72745-70039 [Arabidopsis thaliana]
gi|23297661|gb|AAN13003.1| putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
gi|24415578|gb|AAN41458.1| putative cleavage and polyadenylation specificity factor 73 kDa
subunit [Arabidopsis thaliana]
gi|222422865|dbj|BAH19419.1| AT1G61010 [Arabidopsis thaliana]
gi|222423059|dbj|BAH19511.1| AT1G61010 [Arabidopsis thaliana]
gi|332195645|gb|AEE33766.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|332195646|gb|AEE33767.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
gi|332195647|gb|AEE33768.1| cleavage and polyadenylation specificity factor subunit 3-I
[Arabidopsis thaliana]
Length = 693
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 119/197 (60%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK I+FDCG+H AY+ P F I S +ID ++ITH
Sbjct: 27 LGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPS-----SIDVLLITH 81
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FH+DH +LP+F E +NG ++MT+ T+A+ ++L DY KV + VE F I
Sbjct: 82 FHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKV---SKVSVEDMLFDEQDI 138
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
+ M K+ +D QTV+V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 139 NKSMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRH 197
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+ I E
Sbjct: 198 LRAAELPQFSPDICIIE 214
>gi|226505292|ref|NP_001151522.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Zea mays]
gi|195647398|gb|ACG43167.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Zea mays]
gi|224034229|gb|ACN36190.1| unknown [Zea mays]
gi|413932397|gb|AFW66948.1| cleavage and polyadenylation specificity factor, subunit [Zea mays]
Length = 694
Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 118/197 (59%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV +T G+ ++FDCG+H AY P F I S AID ++ITH
Sbjct: 33 LGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYTGMAALPYFDEIDPS-----AIDVLLITH 87
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE F I
Sbjct: 88 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKV---SKVSVEDMLFDESDI 144
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
A M+K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 145 ARSMEKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRH 203
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+ I E
Sbjct: 204 LRAAELPQFSPDICIIE 220
>gi|290978816|ref|XP_002672131.1| predicted protein [Naegleria gruberi]
gi|284085705|gb|EFC39387.1| predicted protein [Naegleria gruberi]
Length = 749
Score = 156 bits (395), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 119/195 (61%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+S V++ GK ++FDCG+H A+ P F I S ID +++TH
Sbjct: 44 LGAGNEVGRSAVLLQFKGKTVLFDCGIHPAFTGMASLPFFDTIEPS-----EIDLVLVTH 98
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+FTE + G ++MT+PT+A+ ++L D+ KV D + + FT ++ +
Sbjct: 99 FHLDHCGALPYFTEHTNFQGRVFMTHPTKAIYKLLLTDFVKV-SDVHVDDQLFTEQNLLD 157
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
+KK+ +D Q ++ ++ Y AGHVLGAAMF ++ ++YTGD++ PDRHL
Sbjct: 158 SLKKIELIDYHQELE-HNGIKFWCYNAGHVLGAAMFMVEIAGVRVLYTGDFSRQPDRHLL 216
Query: 188 AARIDRLQLDLLITE 202
A + D+LI E
Sbjct: 217 GAETPTMSPDVLIVE 231
>gi|66356658|ref|XP_625507.1| cleavage and polyadenylation specifity factor protein, CPSF
metallobeta-lactamase [Cryptosporidium parvum Iowa II]
gi|46226496|gb|EAK87490.1| cleavage and polyadenylation specifity factor protein, CPSF
metallobeta-lactamase [Cryptosporidium parvum Iowa II]
Length = 780
Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats.
Identities = 81/206 (39%), Positives = 119/206 (57%), Gaps = 16/206 (7%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
VLGAG EVG+SCVVV+ G+ +MFDCG+H A++ P F I S ID +IT
Sbjct: 28 VLGAGCEVGRSCVVVSFKGRSVMFDCGIHPAFSGIGSLPVFDAIDVS-----TIDLCLIT 82
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ------- 119
HFHLDH GA P+F + +NG ++MT PT+A+ ++ +DY +V G +E
Sbjct: 83 HFHLDHSGATPYFVSLTDFNGKVFMTEPTKAICKLVWQDYARVNKFSAGSIESEEAPLSS 142
Query: 120 ---FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
+T I + + +D +Q V++D ++ Y AGHVLGA MF ++G ++YTG
Sbjct: 143 INLYTEKDIEKAINMTEIIDFRQQVELD-GIRFSCYGAGHVLGACMFLVEIGGVRILYTG 201
Query: 177 DYNMTPDRHLGAARIDRLQLDLLITE 202
DY+ DRH+ A I + + +LI E
Sbjct: 202 DYSREDDRHVPRAEIPPIDVHVLICE 227
>gi|269860830|ref|XP_002650133.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Enterocytozoon bieneusi H348]
gi|220066453|gb|EED43934.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Enterocytozoon bieneusi H348]
Length = 657
Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats.
Identities = 78/195 (40%), Positives = 115/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SC+ + K+ + DCG+H AY P I+ ID + ITH
Sbjct: 15 LGAGSEVGRSCIHIKYQEKQFLMDCGVHPAYTGVSCLPFLDLINLE-----EIDAVFITH 69
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH ALPF TE + G +YMT+PT+A+ +L DY ++ ++ + + +T +
Sbjct: 70 FHLDHAAALPFLTEKTAFKGKVYMTHPTKAILKWLLNDYIRI-INSASDEDFYTEKDLEN 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
C K+I +D Q + V ++ A AGHVLGAAMF ++G + ++YTGD++ DRHL
Sbjct: 129 CYNKIIPIDYHQVIDV-VGIKFTALNAGHVLGAAMFLLEIGQTKLLYTGDFSREDDRHLK 187
Query: 188 AARIDRLQLDLLITE 202
+A +LD+LITE
Sbjct: 188 SAETPNCKLDILITE 202
>gi|226497180|ref|NP_001146407.1| uncharacterized protein LOC100279987 [Zea mays]
gi|219887045|gb|ACL53897.1| unknown [Zea mays]
gi|414873991|tpg|DAA52548.1| TPA: hypothetical protein ZEAMMB73_264007 [Zea mays]
Length = 697
Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 118/197 (59%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV +T G+ ++FDCG+H AY+ P F I S AID ++ITH
Sbjct: 33 LGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLITH 87
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH--I 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE D I
Sbjct: 88 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKV---SKVSVEDMLYDESDI 144
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
A M K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 145 ARSMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRH 203
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+ I E
Sbjct: 204 LRAAELPQFSPDICIIE 220
>gi|440493393|gb|ELQ75870.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) [Trachipleistophora hominis]
Length = 801
Score = 155 bits (392), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 79/182 (43%), Positives = 111/182 (60%), Gaps = 7/182 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SC+ +T I+ DCG+H AY P I+ S +D + ITH
Sbjct: 12 LGAGNEVGRSCIHITYKSLSILLDCGVHPAYTGTASLPFLDLINLS-----TVDAVFITH 66
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ TE + G ++MT+PT+A+ +L DY ++ ++ E++ +T ++
Sbjct: 67 FHLDHAGALPYLTEKTAFTGKVFMTHPTKAILRWLLNDYIRI-INTNTEIDFYTEKDLSN 125
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
C K+IA+D QTV V KD ++ A AGHVLGAAMF + M+YTGDY+ DRHL
Sbjct: 126 CYDKIIAIDYNQTVIV-KDFRVTALNAGHVLGAAMFMVENERFRMLYTGDYSTEEDRHLK 184
Query: 188 AA 189
A
Sbjct: 185 GA 186
>gi|242032211|ref|XP_002463500.1| hypothetical protein SORBIDRAFT_01g000850 [Sorghum bicolor]
gi|241917354|gb|EER90498.1| hypothetical protein SORBIDRAFT_01g000850 [Sorghum bicolor]
Length = 695
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 118/197 (59%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV +T G+ ++FDCG+H AY+ P F I S ID ++ITH
Sbjct: 33 LGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPST-----IDVLLITH 87
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH--I 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE D I
Sbjct: 88 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKV---SKVSVEDMLYDENDI 144
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
A M+K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 145 ARSMEKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRH 203
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+ I E
Sbjct: 204 LRAAELPQFSPDICIIE 220
>gi|148683101|gb|EDL15048.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_a
[Mus musculus]
Length = 207
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/107 (68%), Positives = 89/107 (83%)
Query: 96 RALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAG 155
+A+ PI+LEDYRK+ VD++GE FTS I +CMKKV+AV L QTVQVD +L+I+AYYAG
Sbjct: 8 QAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAG 67
Query: 156 HVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
HVLGAAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 68 HVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 114
>gi|357114659|ref|XP_003559115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 768
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 117/197 (59%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV +T G+ ++FDCG+H AY+ P F I S AID +++TH
Sbjct: 104 LGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLVTH 158
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE F I
Sbjct: 159 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKV---SKVSVEDMLFDEQDI 215
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 216 IRSMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRH 274
Query: 186 LGAARIDRLQLDLLITE 202
L AA I + D+ I E
Sbjct: 275 LKAAEIPQFSPDVCIVE 291
>gi|357117889|ref|XP_003560694.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Brachypodium distachyon]
Length = 690
Score = 154 bits (388), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 117/197 (59%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV +T G+ ++FDCG+H AY+ P F I S AID +++TH
Sbjct: 26 LGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLVTH 80
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE F I
Sbjct: 81 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKV---SKVSVEDMLFDEQDI 137
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 138 IRSMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRH 196
Query: 186 LGAARIDRLQLDLLITE 202
L AA I + D+ I E
Sbjct: 197 LKAAEIPQFSPDVCIVE 213
>gi|326495416|dbj|BAJ85804.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 117/197 (59%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV +T G+ ++FDCG+H AY+ P F I S AID +++TH
Sbjct: 41 LGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLVTH 95
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE F I
Sbjct: 96 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKV---SKVSVEDMLFDEQDI 152
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 153 IRSMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRH 211
Query: 186 LGAARIDRLQLDLLITE 202
L AA I + D+ I E
Sbjct: 212 LKAAEIPQFSPDICIIE 228
>gi|326487902|dbj|BAJ89790.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 117/197 (59%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV +T G+ ++FDCG+H AY+ P F I S AID +++TH
Sbjct: 41 LGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLVTH 95
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE F I
Sbjct: 96 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKV---SKVSVEDMLFDEQDI 152
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 153 IRSMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRH 211
Query: 186 LGAARIDRLQLDLLITE 202
L AA I + D+ I E
Sbjct: 212 LKAAEIPQFSPDICIIE 228
>gi|308807807|ref|XP_003081214.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) (ISS) [Ostreococcus tauri]
gi|116059676|emb|CAL55383.1| mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF
subunit) (ISS) [Ostreococcus tauri]
Length = 572
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 78/200 (39%), Positives = 119/200 (59%), Gaps = 6/200 (3%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LGAG EVG+SCVV T GK +MFDCG+H ++ P + S A+D
Sbjct: 16 LEIIPLGAGSEVGRSCVVATFRGKTLMFDCGIHPGFSGIASLPYLDDVDLS-----AVDA 70
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+++THFHLDH A+PF + G I+MT+PT+A+ ++++D+ +++ GE FT
Sbjct: 71 LLVTHFHLDHCAAVPFLVGRTDFRGRIFMTHPTKAIYHMLMQDFVRLMKQGGGEEPLFTD 130
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ MK++ VD Q + VD +++ Y AGHVLGA MF +G ++YTGDY+
Sbjct: 131 ADLEASMKRIEVVDFHQEIDVD-GVKVTPYRAGHVLGACMFNVDIGGLRVLYTGDYSRIA 189
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL AA I + ++I E
Sbjct: 190 DRHLPAADIPAIPPHVVIVE 209
>gi|356525973|ref|XP_003531594.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Glycine max]
Length = 688
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK I+FDCG+H+ ++ P F I S +D ++ITH
Sbjct: 25 LGAGNEVGRSCVYMSYKGKSILFDCGIHLGFSGMSALPYFDEIDPST-----LDVLLITH 79
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH +LP+F E + G ++MTY T+A+ ++L D+ KV + VE F I
Sbjct: 80 FHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLSDFVKV---SKVSVEDMLFDEQDI 136
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QTV+V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 137 NRSMDKIEVIDFHQTVEVN-GIRFWCYAAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 195
Query: 186 LGAARIDRLQLDLLITE 202
L AA I + D+ I E
Sbjct: 196 LRAAEIPQFSPDVCIIE 212
>gi|429966185|gb|ELA48182.1| hypothetical protein VCUG_00420 [Vavraia culicis 'floridensis']
Length = 669
Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 110/182 (60%), Gaps = 7/182 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SC+ +T I+ DCG+H AY P I+ S +D + ITH
Sbjct: 12 LGAGNEVGRSCIHITYKSLSILLDCGVHPAYTGTSSLPFLDLINLS-----TVDAVFITH 66
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ TE + G ++MT+PT+A+ +L DY ++ ++ E++ ++ +
Sbjct: 67 FHLDHAGALPYLTEKTNFAGKVFMTHPTKAILRWLLNDYIRI-INANTEIDFYSEKDLNN 125
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
C K+IA+D QTV V KD ++ A AGHVLGAAMF + ++YTGDY+ DRHL
Sbjct: 126 CYDKIIAIDYNQTVVV-KDFKVSALNAGHVLGAAMFMIENDRVKILYTGDYSTEEDRHLK 184
Query: 188 AA 189
A
Sbjct: 185 GA 186
>gi|147787280|emb|CAN71414.1| hypothetical protein VITISV_029216 [Vitis vinifera]
Length = 687
Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK I+FDCG+H AY+ P F I S ID +++TH
Sbjct: 22 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPST-----IDVLLVTH 76
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH--I 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE D I
Sbjct: 77 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKV---SKVSVEDMLYDEQDI 133
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 134 LRSMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 192
Query: 186 LGAARIDRLQLDLLITE 202
L AA I + D+ I E
Sbjct: 193 LRAAEIPQFSPDICIIE 209
>gi|359486185|ref|XP_003633408.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 694
Score = 152 bits (385), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK I+FDCG+H AY+ P F I S ID +++TH
Sbjct: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPST-----IDVLLVTH 83
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH--I 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE D I
Sbjct: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKV---SKVSVEDMLYDEQDI 140
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 141 LRSMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
Query: 186 LGAARIDRLQLDLLITE 202
L AA I + D+ I E
Sbjct: 200 LRAAEIPQFSPDICIIE 216
>gi|255084461|ref|XP_002508805.1| predicted protein [Micromonas sp. RCC299]
gi|226524082|gb|ACO70063.1| predicted protein [Micromonas sp. RCC299]
Length = 728
Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 76/202 (37%), Positives = 121/202 (59%), Gaps = 10/202 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LGAG EVG+SCV+ + K +MFDCG+H Y P F + S +D
Sbjct: 27 LEIMPLGAGSEVGRSCVLASYKNKTVMFDCGVHPGYAGIASLPYFDEVDLST-----VDA 81
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--F 120
++ITHFHLDH A+PF + G I MT+PT+A+ +++ D+ K ++++G+ + F
Sbjct: 82 MLITHFHLDHCAAVPFVVGRTNFKGRILMTHPTKAIFAMLMNDFVK--LNKQGDNSEALF 139
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+ ECM+++ +D Q + +D +++ Y AGHVLGA MFY +G ++YTGDY+
Sbjct: 140 GEKDVQECMRRIEVIDFHQEMDID-GVKVTPYRAGHVLGACMFYVDIGGLRVLYTGDYSR 198
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
TPDRHL A + + ++I E
Sbjct: 199 TPDRHLPGADLPPIPPHVVIVE 220
>gi|297739590|emb|CBI29772.3| unnamed protein product [Vitis vinifera]
Length = 680
Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK I+FDCG+H AY+ P F I S ID +++TH
Sbjct: 29 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----TIDVLLVTH 83
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH--I 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE D I
Sbjct: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKV---SKVSVEDMLYDEQDI 140
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 141 LRSMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
Query: 186 LGAARIDRLQLDLLITE 202
L AA I + D+ I E
Sbjct: 200 LRAAEIPQFSPDICIIE 216
>gi|403223285|dbj|BAM41416.1| uncharacterized protein TOT_030000678 [Theileria orientalis strain
Shintoku]
Length = 706
Score = 152 bits (385), Expect = 6e-35, Method: Composition-based stats.
Identities = 73/164 (44%), Positives = 109/164 (66%), Gaps = 17/164 (10%)
Query: 55 DFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLED--------- 105
+ N ID +I+HFH+DH+GALPF TE GY+GP+YMTYPT+AL+P++L D
Sbjct: 116 NVTNTIDSAIISHFHIDHVGALPFLTEEIGYSGPVYMTYPTKALSPLLLRDSGIAAKTAS 175
Query: 106 YRKVL-VDRRGEVEQ------FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVL 158
+ +L D+R +VE+ ++ + +AECMK+ I + L+ +V+ L + +YAGHVL
Sbjct: 176 VKSLLNFDKRRKVEERPDPWGYSFNSVAECMKRSIPLQLRSAEKVE-GLTVSPFYAGHVL 234
Query: 159 GAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
GAAMF A+ ++YTGD+N PD+HLG A++ L+ D+LI E
Sbjct: 235 GAAMFLAESDGFKVLYTGDFNTVPDKHLGPAKVPSLEPDVLICE 278
Score = 70.9 bits (172), Expect = 3e-10, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 42/57 (73%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCI 63
+LGAGQ+VG+SCVVVT KR++FDCG H + DHR+YP+ + + ++N+ ++ +
Sbjct: 8 ILGAGQDVGRSCVVVTFPSKRVVFDCGAHCGFVDHRRYPNLQYLGNTTEYNHQMELL 64
>gi|356543411|ref|XP_003540154.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Glycine max]
Length = 689
Score = 152 bits (385), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 115/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK ++FDCG+H AY+ P F I S +D ++ITH
Sbjct: 26 LGAGNEVGRSCVYMSYKGKTVLFDCGIHPAYSGMAALPYFDEIDPST-----VDVLLITH 80
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH +LP+F E + G ++MTY T+A+ ++L D+ KV + VE F I
Sbjct: 81 FHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLSDFVKV---SKVSVEDMLFDEQDI 137
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QTV+V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 138 NRSMDKIEVIDFHQTVEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 196
Query: 186 LGAARIDRLQLDLLITE 202
L AA + D+ I E
Sbjct: 197 LRAAETPQFSPDVCIIE 213
>gi|402465801|gb|EJW01455.1| hypothetical protein EDEG_00447 [Edhazardia aedis USNM 41457]
Length = 774
Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats.
Identities = 77/195 (39%), Positives = 117/195 (60%), Gaps = 8/195 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SC+ + +++ D G+H A+ P I + ID + +TH
Sbjct: 12 LGAGNEVGRSCIHIEYKQTQLLLDIGIHPAFTGPCALPFLDVIDL-----HKIDALFVTH 66
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ TE + G I+MT+PT+++ +L DY KV V+ + +T +
Sbjct: 67 FHLDHAGALPYLTEKTNFKGKIFMTHPTKSILKYLLNDYTKV-VNASSNEDMYTEADLKN 125
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
C K+ A+D Q +++ KD+++ + AGHVLGAAMF K+G ++YTGDY+ PDRHL
Sbjct: 126 CYNKIFAIDYFQEIKI-KDIKVVSLNAGHVLGAAMFLLKIGSKKLLYTGDYSTEPDRHLK 184
Query: 188 AARIDRLQLDLLITE 202
A+ +++ LITE
Sbjct: 185 EAKCPG-KINFLITE 198
>gi|326508058|dbj|BAJ86772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 704
Score = 152 bits (384), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV +T G+ ++FDCG+H AY+ P F I S AID +++TH
Sbjct: 41 LGAGSEVGRSCVHMTFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLVTH 95
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE F I
Sbjct: 96 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKV---SKVSVEDMLFDEQDI 152
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QT++V+ ++ Y AGHVLGAAMF + + YTGDY+ DRH
Sbjct: 153 IRSMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRIRYTGDYSREEDRH 211
Query: 186 LGAARIDRLQLDLLITE 202
L AA I + D+ I E
Sbjct: 212 LKAAEIPQFSPDICIIE 228
>gi|146163951|ref|XP_001012725.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila]
gi|146145850|gb|EAR92480.2| metallo beta lactamase domain containing protein [Tetrahymena
thermophila SB210]
Length = 750
Score = 152 bits (383), Expect = 1e-34, Method: Composition-based stats.
Identities = 80/198 (40%), Positives = 118/198 (59%), Gaps = 12/198 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK IMFDCG+HM N H P F I + ID I ITH
Sbjct: 6 LGAGQEVGRSCIILEYKGKTIMFDCGLHMGKNGHASLPYFDNIKP-----DQIDIIFITH 60
Query: 68 FHLDHIGALPFF---TEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
FHLDH ALP+F T+ G +Y T PTRA+ +L D L D+ ++ +T+D
Sbjct: 61 FHLDHCAALPYFIAKTDFDGKKQKVYATSPTRAIYRHVLRD---SLTDKSENIKLYTADD 117
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
I + M+ + +D + ++ ++++ + Y AGHVLGAAMF ++ ++YTGDY+ D
Sbjct: 118 IEKSMEVINVIDFYEEME-HENIKFKCYPAGHVLGAAMFLVEIDGVRVLYTGDYSTEKDI 176
Query: 185 HLGAARIDRLQLDLLITE 202
+ A+I ++D+LI E
Sbjct: 177 LIPPAQIPNEKVDVLIVE 194
>gi|224140919|ref|XP_002323824.1| predicted protein [Populus trichocarpa]
gi|222866826|gb|EEF03957.1| predicted protein [Populus trichocarpa]
Length = 699
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 115/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK ++FDCG+H AY+ P F I S ID +++TH
Sbjct: 30 LGAGNEVGRSCVYMSFKGKTVLFDCGIHPAYSGMAALPYFDEIDPST-----IDVLLVTH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE F I
Sbjct: 85 FHLDHAASLPYFLEKTTFRGRVFMTHATKAIYKLLLTDYVKV---SKVSVEDMLFDEKDI 141
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QTV V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 142 NRSMDKIEVIDFHQTVDVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 200
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+ I E
Sbjct: 201 LRAAEMPQFSPDICIIE 217
>gi|125546484|gb|EAY92623.1| hypothetical protein OsI_14368 [Oryza sativa Indica Group]
Length = 700
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ G+ ++FDCG+H AY+ P F I S ID ++ITH
Sbjct: 36 LGAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPYFDEIDPST-----IDVLLITH 90
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE F I
Sbjct: 91 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKV---SKVSVEDMLFDEQDI 147
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 148 LRSMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 206
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+ I E
Sbjct: 207 LKAAELPQFSPDICIIE 223
>gi|255542245|ref|XP_002512186.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Ricinus communis]
gi|223548730|gb|EEF50220.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Ricinus communis]
Length = 361
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK ++FDCG+H AY+ P F I S ID ++ITH
Sbjct: 29 LGAGNEVGRSCVYMSYKGKIVLFDCGIHPAYSGMAALPYFDEIDPST-----IDVLLITH 83
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + +E F I
Sbjct: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKV---SKVSIEDMLFDEQDI 140
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QTV+V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 141 NRSMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRLLYTGDYSREEDRH 199
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+ I E
Sbjct: 200 LRAAEMPQFSPDICIIE 216
>gi|357445375|ref|XP_003592965.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|357445453|ref|XP_003593004.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|355482013|gb|AES63216.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
gi|355482052|gb|AES63255.1| Cleavage and polyadenylation specificity factor subunit 3-I
[Medicago truncatula]
Length = 690
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 114/197 (57%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV +T GK ++FDCG+H Y+ P F I S +D ++ITH
Sbjct: 27 LGAGNEVGRSCVYMTYKGKTVLFDCGIHPGYSGMAALPYFDEIDPST-----VDVLLITH 81
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH--I 125
FHLDH +LP+F E + G ++MTY T+A+ ++L DY KV + V+ D I
Sbjct: 82 FHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDYVKV---SKVSVDDMLYDEQDI 138
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QTV+V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 139 NRSMDKIEVIDFHQTVEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 197
Query: 186 LGAARIDRLQLDLLITE 202
L AA + D+ I E
Sbjct: 198 LRAAETPQFSPDVCIIE 214
>gi|115456655|ref|NP_001051928.1| Os03g0852900 [Oryza sativa Japonica Group]
gi|27573349|gb|AAO20067.1| putative cleavage and polyadenylation specifity factor protein
[Oryza sativa Japonica Group]
gi|29126360|gb|AAO66552.1| putative cleavage and polyadenylation specifity factor [Oryza
sativa Japonica Group]
gi|108712151|gb|ABF99946.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit,
putative, expressed [Oryza sativa Japonica Group]
gi|113550399|dbj|BAF13842.1| Os03g0852900 [Oryza sativa Japonica Group]
gi|125588676|gb|EAZ29340.1| hypothetical protein OsJ_13407 [Oryza sativa Japonica Group]
Length = 700
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ G+ ++FDCG+H AY+ P F I S ID ++ITH
Sbjct: 36 LGAGNEVGRSCVYMSFKGRTVLFDCGIHPAYSGMAALPYFDEIDPST-----IDVLLITH 90
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE F I
Sbjct: 91 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKV---SKVSVEDMLFDEQDI 147
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 148 LRSMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 206
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+ I E
Sbjct: 207 LKAAELPQFSPDICIIE 223
>gi|348686031|gb|EGZ25846.1| hypothetical protein PHYSODRAFT_478942 [Phytophthora sojae]
Length = 733
Score = 151 bits (382), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 117/197 (59%), Gaps = 7/197 (3%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
+ LGAG EVG+SC+V+ GK IM DCG+H Y+ H P F + ID ++I
Sbjct: 20 MPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFDGVEA-----EEIDLLLI 74
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
THFH+DH+ ALP FTE + G ++MT+PT+A+ +ML D+ +V + + + + +
Sbjct: 75 THFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRDFLRV-SNISVDDQIYDDKDL 133
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
C+ KV +D Q + + ++ Y AGHVLGA M+ ++G ++YTGDY++ DRH
Sbjct: 134 NNCVSKVEIIDFHQEI-MHNGIKFTPYNAGHVLGACMYLIEIGGVKVLYTGDYSLENDRH 192
Query: 186 LGAARIDRLQLDLLITE 202
L AA + D+LI E
Sbjct: 193 LMAAELPACSPDVLIVE 209
>gi|209876680|ref|XP_002139782.1| cleavage and polyadenylation specificity factor subunit 3
[Cryptosporidium muris RN66]
gi|209555388|gb|EEA05433.1| cleavage and polyadenylation specificity factor subunit 3, putative
[Cryptosporidium muris RN66]
Length = 767
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/208 (39%), Positives = 122/208 (58%), Gaps = 19/208 (9%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCVVVT G+ +MFDCG+H A++ P F + S +ID ++TH
Sbjct: 29 LGAGCEVGRSCVVVTFKGRSVMFDCGIHPAFSGIGSLPVFDAVDIS-----SIDLCLVTH 83
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRK---------VLVDRRGE-- 116
FHLDH GA+P+F +NG I+MT PT+A+ ++ +DY + V VD
Sbjct: 84 FHLDHSGAIPYFVSSTDFNGRIFMTEPTKAICKLVWQDYARMNRFSTNSPVPVDSDEAPV 143
Query: 117 --VEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVY 174
V +T I + MK++ +D +Q ++D ++I Y AGHVLGA MF ++G ++Y
Sbjct: 144 SCVNLYTEPDIEKAMKRIEIIDFRQQAEID-GVRISCYGAGHVLGACMFLVEIGGVRILY 202
Query: 175 TGDYNMTPDRHLGAARIDRLQLDLLITE 202
TGDY+ DRH+ A I + + +LI E
Sbjct: 203 TGDYSREDDRHVPRAEIPPVDVHVLICE 230
>gi|224140921|ref|XP_002323825.1| predicted protein [Populus trichocarpa]
gi|222866827|gb|EEF03958.1| predicted protein [Populus trichocarpa]
Length = 696
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK ++FDCG+H+AY+ P F I S ID +++TH
Sbjct: 30 LGAGNEVGRSCVYMSFKGKTVLFDCGIHLAYSGMAALPYFDEIDPST-----IDVLLVTH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L +Y KV + VE F I
Sbjct: 85 FHLDHAASLPYFLEKTTFRGRVFMTHATKAIFKLLLTNYVKV---SKVSVEDMLFDEKDI 141
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QTV V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 142 NRSMDKIEVIDFHQTVDVN-GIKFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 200
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+ I E
Sbjct: 201 LCAAEMPQFSPDICIIE 217
>gi|297739612|emb|CBI29794.3| unnamed protein product [Vitis vinifera]
Length = 581
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK I+FDCG+H AY+ P F I S ID +++TH
Sbjct: 28 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPS-----TIDVLLVTH 82
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH--I 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE D I
Sbjct: 83 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKV---SKVSVEDMLYDEQDI 139
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 140 LRSMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 198
Query: 186 LGAARIDRLQLDLLITE 202
L AA I + D+ I E
Sbjct: 199 LRAAEIPQFCPDICIIE 215
>gi|359486187|ref|XP_002271646.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Vitis vinifera]
Length = 693
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/197 (42%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK I+FDCG+H AY+ P F I S ID +++TH
Sbjct: 28 LGAGNEVGRSCVYMSYKGKTILFDCGIHPAYSGMAALPYFDEIDPST-----IDVLLVTH 82
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH--I 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE D I
Sbjct: 83 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLSDYVKV---SKVSVEDMLYDEQDI 139
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 140 LRSMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 198
Query: 186 LGAARIDRLQLDLLITE 202
L AA I + D+ I E
Sbjct: 199 LRAAEIPQFCPDICIIE 215
>gi|388498176|gb|AFK37154.1| unknown [Lotus japonicus]
Length = 315
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 115/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK ++FDCG+H AY+ P F I S +D ++ITH
Sbjct: 26 LGAGNEVGRSCVYMSYKGKTVLFDCGIHPAYSGMAALPYFDEIDPS-----TVDVLLITH 80
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH +LP+F E + G ++MTY T+A+ ++L D+ KV + VE F I
Sbjct: 81 FHLDHAASLPYFLEKTTFRGRVFMTYATKAIYKLLLSDFVKV---SKVSVEDMLFDEQDI 137
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 138 NRSMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 196
Query: 186 LGAARIDRLQLDLLITE 202
L AA + D+ I E
Sbjct: 197 LRAAETPQFSPDVCIIE 213
>gi|301111988|ref|XP_002905073.1| cleavage and polyadenylation specificity factor subunit 3
[Phytophthora infestans T30-4]
gi|262095403|gb|EEY53455.1| cleavage and polyadenylation specificity factor subunit 3
[Phytophthora infestans T30-4]
Length = 724
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 77/197 (39%), Positives = 117/197 (59%), Gaps = 7/197 (3%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
+ LGAG EVG+SC+V+ GK IM DCG+H Y+ H P F + ID ++I
Sbjct: 20 MPLGAGNEVGRSCIVLKFKGKTIMLDCGVHPGYSGHGSLPFFDGVEAE-----EIDLLLI 74
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
THFH+DH+ ALP FTE + G ++MT+PT+A+ +ML D+ +V + + + + +
Sbjct: 75 THFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRDFLRV-SNISVDDQIYDDKDL 133
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
C+ KV +D Q + + ++ Y AGHVLGA M+ ++G ++YTGDY++ DRH
Sbjct: 134 NNCVSKVEIIDFHQEM-MHNGIKFTPYNAGHVLGACMYLIEIGGVKVLYTGDYSLENDRH 192
Query: 186 LGAARIDRLQLDLLITE 202
L AA + D+LI E
Sbjct: 193 LMAAELPACSPDVLIVE 209
>gi|326503296|dbj|BAJ99273.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 693
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 117/197 (59%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ G+ ++FDCG+H AY+ P F I S AID +++TH
Sbjct: 29 LGAGGEVGRSCVHMSFKGRTVLFDCGIHPAYSGMAALPYFDEIDPS-----AIDVLLVTH 83
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + VE F +
Sbjct: 84 FHLDHAASLPYFLEKTTFKGRVFMTHATKAIYRLLLSDYVKV---SKVSVEDMLFDEQDV 140
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 141 IRSMDKIEVIDFHQTLEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRH 199
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+ I E
Sbjct: 200 LKAAEVPQFSPDICIIE 216
>gi|428172766|gb|EKX41673.1| hypothetical protein GUITHDRAFT_74597 [Guillardia theta CCMP2712]
Length = 615
Score = 150 bits (380), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 78/206 (37%), Positives = 117/206 (56%), Gaps = 15/206 (7%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
++ + LGAG EVG+SC ++ GK IMFDCG H Y P F + +ID
Sbjct: 23 TLEFIPLGAGNEVGRSCCLLKFKGKTIMFDCGAHPGYRGEESLPFFDEVDA-----ESID 77
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-- 119
+++THFH+DH ++P+F + G +YMTYPT A+ ++ D+ KV G EQ
Sbjct: 78 LLLVTHFHVDHAASVPYFLTKTTFKGKVYMTYPTLAICKLVWSDFIKV----SGISEQYG 133
Query: 120 ---FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
+T I E + K+I +D Q V+V+ ++ Y AGHVLGA MF ++ ++YTG
Sbjct: 134 GSLYTEKDIQETVNKIICIDYHQEVEVE-GVKFWCYNAGHVLGACMFIVQIAGVRLLYTG 192
Query: 177 DYNMTPDRHLGAARIDRLQLDLLITE 202
DY+ DRHL AA + +Q+ +L+ E
Sbjct: 193 DYSRQEDRHLMAAEMPSVQVHVLVVE 218
>gi|168026077|ref|XP_001765559.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683197|gb|EDQ69609.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 682
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 119/202 (58%), Gaps = 11/202 (5%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ LGAG EVG+SCV +T GK +MFDCG+H Y+ P F I +ID
Sbjct: 18 LEVTPLGAGNEVGRSCVYMTYKGKTVMFDCGIHPGYSGMAALPYFDEIDPI-----SIDV 72
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+++THFHLDH +LP+F E + G ++MT+ T+A+ ++L D+ K+ + V+
Sbjct: 73 LLVTHFHLDHCASLPYFLEKTNFKGRVFMTHATKAIYKLLLSDFVKI---SKVSVDDMLY 129
Query: 123 DH--IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
D IA M+K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+
Sbjct: 130 DEHDIARTMEKIEVIDFHQTMEVN-GIRFWCYTAGHVLGAAMFMVDIAGMRVLYTGDYSC 188
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL AA + R D+ I E
Sbjct: 189 EEDRHLRAAEMPRFSPDVCIIE 210
>gi|302806483|ref|XP_002984991.1| hypothetical protein SELMODRAFT_234671 [Selaginella moellendorffii]
gi|302825687|ref|XP_002994439.1| hypothetical protein SELMODRAFT_236963 [Selaginella moellendorffii]
gi|300137630|gb|EFJ04498.1| hypothetical protein SELMODRAFT_236963 [Selaginella moellendorffii]
gi|300147201|gb|EFJ13866.1| hypothetical protein SELMODRAFT_234671 [Selaginella moellendorffii]
Length = 677
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 117/202 (57%), Gaps = 11/202 (5%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LGAG EVG+SC +T GK I+FDCG+H Y P F I S ID
Sbjct: 16 MEIMPLGAGSEVGRSCCHMTYKGKTILFDCGIHPGYTGMAALPYFDEIDPST-----IDV 70
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+++THFHLDH +LP+F E + G ++MT+ T+A+ ++L DY K+ +G VE
Sbjct: 71 LLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKI---SKGSVEDMLY 127
Query: 123 DH--IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
D + + M K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+
Sbjct: 128 DEQDVLKTMDKIEVIDFHQTMEVN-GIRFWCYTAGHVLGAAMFMVDIAGIRVLYTGDYSR 186
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL AA + D+ I E
Sbjct: 187 EEDRHLKAAEMPEFSPDVCIIE 208
>gi|302808975|ref|XP_002986181.1| hypothetical protein SELMODRAFT_234972 [Selaginella moellendorffii]
gi|300146040|gb|EFJ12712.1| hypothetical protein SELMODRAFT_234972 [Selaginella moellendorffii]
Length = 684
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/202 (39%), Positives = 117/202 (57%), Gaps = 11/202 (5%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LGAG EVG+SC +T GK I+FDCG+H Y P F I S ID
Sbjct: 23 MEIMPLGAGSEVGRSCCHMTYKGKTILFDCGIHPGYTGMAALPYFDEIDPST-----IDV 77
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+++THFHLDH +LP+F E + G ++MT+ T+A+ ++L DY K+ +G VE
Sbjct: 78 LLVTHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLTDYVKI---SKGSVEDMLY 134
Query: 123 DH--IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
D + + M K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+
Sbjct: 135 DEQDVLKTMDKIEVIDFHQTMEVN-GIRFWCYTAGHVLGAAMFMVDIAGIRVLYTGDYSR 193
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL AA + D+ I E
Sbjct: 194 EEDRHLKAAEMPEFSPDVCIIE 215
>gi|145507230|ref|XP_001439570.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406765|emb|CAK72173.1| unnamed protein product [Paramecium tetraurelia]
Length = 484
Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 81/198 (40%), Positives = 115/198 (58%), Gaps = 32/198 (16%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEI--CGYN 86
M DCG+HM + D+R++PDFS I + +D ++ITHFHLDH GALP+FTE+ GYN
Sbjct: 1 MLDCGLHMTHQDNRRFPDFSLIEEKLG-RKYVDLVLITHFHLDHCGALPYFTELYGNGYN 59
Query: 87 GPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ----------------------FTSDH 124
GP+ M+ PT+AL P MLEDYR++ + + + + ++
Sbjct: 60 GPVVMSMPTKALLPYMLEDYRRIWTMPKEDQQFQQQSSQQDYSINPQIKTDPLLIYDHEN 119
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
I C+ KV + L +T D +++ AYYAGH+LGA MF+ K + YN DR
Sbjct: 120 IKSCVNKVQVIGLYETQNFD-GVEVTAYYAGHLLGACMFHVKYKNEI------YNSIADR 172
Query: 185 HLGAARIDRLQLDLLITE 202
HLG A ID+LQ DL+I+E
Sbjct: 173 HLGGAYIDQLQPDLVISE 190
>gi|449435476|ref|XP_004135521.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-I-like [Cucumis sativus]
Length = 392
Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 115/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ K ++FDCG+H AY+ P F I S ID ++ITH
Sbjct: 29 LGAGNEVGRSCVYMSYKSKIVLFDCGIHPAYSGMAALPYFDEIDPST-----IDVLLITH 83
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH--I 125
FHLDH +LP+F E + G ++MTY T+A+ ++L D+ KV + VE D I
Sbjct: 84 FHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLSDFVKV---SKVSVEDMLYDEQDI 140
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
M K+ +D QTV+V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 141 NRSMDKIEVIDFHQTVEVN-GIRFWCYTAGHVLGAAMFMVDIAGVRVLYTGDYSREEDRH 199
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+ I E
Sbjct: 200 LRAAEMPQFSPDVCIIE 216
>gi|325186851|emb|CCA21396.1| cleavage and polyadenylation specific factor 3 puta [Albugo
laibachii Nc14]
Length = 759
Score = 149 bits (377), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 116/197 (58%), Gaps = 7/197 (3%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
+ LGAG EVG+SC+++ GK IM DCG+H Y+ H P F + ID +++
Sbjct: 21 MPLGAGNEVGRSCIILKFKGKTIMLDCGVHPGYSGHGSLPFFDGVEA-----EEIDLLLV 75
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
THFH+DH+ ALP FTE + G ++MT+PT+A+ +ML D+ +V + + + + +
Sbjct: 76 THFHIDHVAALPHFTEKTNFKGRVFMTHPTKAVMQMMLRDFLRV-SNISVDDQIYDDKDL 134
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
C+ KV +D Q + ++ Y AGHVLGA M+ ++G ++YTGDY++ DRH
Sbjct: 135 NNCVAKVEIIDFHQE-KTHNGIKFTPYNAGHVLGACMYLIEIGGVKVLYTGDYSLENDRH 193
Query: 186 LGAARIDRLQLDLLITE 202
L AA + D+LI E
Sbjct: 194 LMAAELPACSPDVLIVE 210
>gi|339237605|ref|XP_003380357.1| cleavage and polyadenylation specificity factor subunit 3
[Trichinella spiralis]
gi|316976818|gb|EFV60027.1| cleavage and polyadenylation specificity factor subunit 3
[Trichinella spiralis]
Length = 687
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 119/200 (59%), Gaps = 11/200 (5%)
Query: 5 CLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIV 64
C VLGAGQEVG+SC+++ GK I+ DCG+H N P I C+ +D ++
Sbjct: 22 CKVLGAGQEVGRSCILIQFKGKSILLDCGIHPGLNGVDALPFVDTID--CE---KVDLLL 76
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTS 122
+THFHLDH G LP+F E + G +MT+ T+A+ PI+L DY KV ++Q ++
Sbjct: 77 VTHFHLDHCGGLPWFLEKTTFRGRCFMTHATKAIYPIILSDYVKV---SNIGLDQMLYSE 133
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
D + + M K+ +D + +V+ ++ Y AGHVLGA MF ++ ++YTGDY+
Sbjct: 134 DELEKSMDKIELIDFHEQKEVN-GIKFWCYVAGHVLGACMFMIEIAGVRILYTGDYSRLE 192
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL AA + ++ D+LI E
Sbjct: 193 DRHLCAAEVPSIRPDVLIAE 212
>gi|307110126|gb|EFN58363.1| hypothetical protein CHLNCDRAFT_142438 [Chlorella variabilis]
Length = 709
Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/200 (38%), Positives = 119/200 (59%), Gaps = 7/200 (3%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
+ L LGAGQEVG+SC++V GK +M DCG+H + P F + S +D
Sbjct: 25 VQILPLGAGQEVGRSCIIVRYCGKTVMLDCGVHPGFFGIASLPFFDEVDLS-----EVDA 79
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+++THFHLDH A+P+ T + G + MT+PT+A+ +L+D+ KV GE ++
Sbjct: 80 MLVTHFHLDHCAAVPYVTGHTSFRGRVLMTHPTKAIVHTLLKDFVKVSKGGSGE-GLYSE 138
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ M++ +D QTV +D +++ AY AGHVLGAAMF +VG ++YTGDY+ P
Sbjct: 139 RDLDAAMERTEVIDFHQTVDLD-GIRVTAYRAGHVLGAAMFMVEVGGMRLLYTGDYSRIP 197
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRH+ AA + + +++ E
Sbjct: 198 DRHMPAADLPAQRPHIVVVE 217
>gi|168007963|ref|XP_001756677.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692273|gb|EDQ78631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 682
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 118/202 (58%), Gaps = 11/202 (5%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ LGAG EVG+SCV +T GK +MFDCG+H Y+ P F I +ID
Sbjct: 18 LEVTPLGAGNEVGRSCVYMTYKGKTVMFDCGIHPGYSGMAALPYFDEIDPI-----SIDV 72
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+++THFHLDH +LP+F E + G ++MT+ T+A+ ++L D+ K+ + V+
Sbjct: 73 LLVTHFHLDHCASLPYFLEKTNFKGRVFMTHATKAIYKLLLSDFVKI---SKVSVDDMLY 129
Query: 123 DH--IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
D IA M+K+ +D QT++V+ ++ Y AGHVLGAAMF + ++YTGDY+
Sbjct: 130 DEHDIARTMEKIEVIDFHQTMEVN-GIRFWCYTAGHVLGAAMFMVDIAGMRVLYTGDYSC 188
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL AA + D+ I E
Sbjct: 189 EEDRHLRAAEMPHFSPDVCIIE 210
>gi|330842661|ref|XP_003293292.1| hypothetical protein DICPUDRAFT_158104 [Dictyostelium purpureum]
gi|325076396|gb|EGC30185.1| hypothetical protein DICPUDRAFT_158104 [Dictyostelium purpureum]
Length = 789
Score = 147 bits (372), Expect = 2e-33, Method: Composition-based stats.
Identities = 71/195 (36%), Positives = 117/195 (60%), Gaps = 4/195 (2%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
+G+G EVG+SCV++ GK+IMFDCG+H AY+ P F + ID ++++H
Sbjct: 36 IGSGNEVGRSCVLLKYKGKKIMFDCGVHPAYSGLVSLPFFDSVESDIP---DIDLLLVSH 92
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH A+P+F ++G ++MT+PT+A+ ++L D+ KV R + F +
Sbjct: 93 FHLDHAAAVPYFVGKTKFSGRVFMTHPTKAIYGMLLADFVKVTTITRDDDMLFDEKDLNS 152
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
++K+ V +Q V+ +++ + AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 153 SLEKIEKVRYRQKVE-HNGIKVTCFNAGHVLGAAMFMVEIAGVKILYTGDFSRQEDRHLM 211
Query: 188 AARIDRLQLDLLITE 202
A +++D+LI E
Sbjct: 212 GAETPPVKVDVLIIE 226
>gi|66820693|ref|XP_643926.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
gi|74860395|sp|Q86A79.1|CPSF3_DICDI RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; Short=Cleavage and polyadenylation
specificity factor 3
gi|60472339|gb|EAL70292.1| beta-lactamase domain-containing protein [Dictyostelium discoideum
AX4]
Length = 774
Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats.
Identities = 72/195 (36%), Positives = 116/195 (59%), Gaps = 4/195 (2%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
+G+G EVG+SCV++ GK++MFDCG+H AY+ P F I ID ++++H
Sbjct: 41 IGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSIESDIP---DIDLLLVSH 97
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH A+P+F + G ++MT+PT+A+ ++L DY KV R + F +
Sbjct: 98 FHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSNITRDDDMLFDKSDLDR 157
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
++K+ V +Q V+ +++ + AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 158 SLEKIEKVRYRQKVE-HNGIKVTCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLM 216
Query: 188 AARIDRLQLDLLITE 202
A +++D+LI E
Sbjct: 217 GAETPPVKVDVLIIE 231
>gi|328867689|gb|EGG16071.1| beta-lactamase domain-containing protein [Dictyostelium
fasciculatum]
Length = 786
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 117/200 (58%), Gaps = 2/200 (1%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
+ + +G+G EVG+SCV++ GK IMFDCG+H AY+ P F I C+ ++ ID
Sbjct: 27 LQIMPIGSGSEVGRSCVLLKYKGKTIMFDCGVHPAYSGLSSLPFFDSIELYCNIDD-IDL 85
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++++HFHLDH A+P+F + + G +YMT+PT+ + ++L DY KV E F
Sbjct: 86 LLVSHFHLDHAAAVPYFVQKTDFKGKVYMTHPTKKIYKVLLSDYVKVSNISVAEDMPFDE 145
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + K+ ++ Q ++ ++ Y AGHVLGAAMF ++ ++YTGD++
Sbjct: 146 QDLNASLPKIEHINYHQKIE-HNGIKFCCYNAGHVLGAAMFMVEIAGVRILYTGDFSRQE 204
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A + +D+LI E
Sbjct: 205 DRHLMGAESPPVDVDVLIIE 224
>gi|145350779|ref|XP_001419775.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580007|gb|ABO98068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 767
Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 117/200 (58%), Gaps = 6/200 (3%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LGAG EVG+SCV+ K +MFDCG+H Y P F I D + +D
Sbjct: 12 LEIIPLGAGSEVGRSCVIARYKQKTLMFDCGIHPGYAGLASLPYFDEI----DLAD-VDA 66
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+ +THFHLDH A+PF +NG I+MT+PT+A+ ++++D+ ++L ++ + F
Sbjct: 67 LFVTHFHLDHCAAVPFLCGRTDFNGRIFMTHPTKAIYHMLMQDFCRLLKNQEPSEQLFGE 126
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ MKK+ +D Q V VD +++ Y AGHVLGA MF +G ++YTGDY+
Sbjct: 127 KDLEASMKKIEVIDFHQEVDVD-GVKVTPYRAGHVLGACMFNVDIGGLRVLYTGDYSRIA 185
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL AA + + ++I E
Sbjct: 186 DRHLPAADVPAIPPHVVIVE 205
>gi|320583131|gb|EFW97347.1| Putative endoribonuclease [Ogataea parapolymorpha DL-1]
Length = 702
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 74/201 (36%), Positives = 121/201 (60%), Gaps = 13/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC +V GK +M D G+H A++ P + DF+ + +D ++I+
Sbjct: 10 LGGGNEVGRSCHIVEYKGKVVMLDAGVHPAFSGAESLPFYD------DFDLSKVDVLLIS 63
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV--LVDRRGEVEQ---FT 121
HFHLDH +LP+ + + G ++MTYPT+A+ +L D+ +V + D E +T
Sbjct: 64 HFHLDHAASLPYVMQHTNFKGRVFMTYPTKAIYKWLLNDFVRVTSIADDNDENSANFLYT 123
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+ + E + ++ +D T++V+ ++ AY+AGHVLGAAMF+ ++G ++TGDY+
Sbjct: 124 DEDLNESLDRIETIDYHSTIEVE-GIRFTAYHAGHVLGAAMFFVELGGLKFLFTGDYSRE 182
Query: 182 PDRHLGAARIDRLQLDLLITE 202
DRHL +A + + DLLITE
Sbjct: 183 EDRHLSSAELPPSRPDLLITE 203
>gi|145478255|ref|XP_001425150.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124392218|emb|CAK57752.1| unnamed protein product [Paramecium tetraurelia]
Length = 690
Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats.
Identities = 81/202 (40%), Positives = 121/202 (59%), Gaps = 18/202 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDH--RQYPDFSRISKSCDFNNAIDCIVI 65
LGAG EVG+SC+++ K+IMFDCG+HM + P F++I K D ID I+I
Sbjct: 13 LGAGNEVGRSCILLQFQEKQIMFDCGIHMNKENKGVMALPYFNKIDKIED----IDLILI 68
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
THFHLDH GALP+F + + G IYMT PT+ + ++L+D KV + E F+ D I
Sbjct: 69 THFHLDHCGALPYFLKNYKFKGKIYMTTPTKEIYGLVLKDSIKV------KSEDFSQDLI 122
Query: 126 AE-----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
E +K + +D Q + + ++++ Y AGHVLGAAMF ++ ++YTGDY+
Sbjct: 123 NEQSIEQSLKNIDCIDYDQEIHY-QGIKLKCYNAGHVLGAAMFMVEIDGVRVLYTGDYST 181
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
+RHL A++ ++ +LI E
Sbjct: 182 EKERHLRPAQLPLEKIHVLIVE 203
>gi|410928245|ref|XP_003977511.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Takifugu rubripes]
Length = 696
Score = 145 bits (366), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 116/195 (59%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 138 SMEKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LITE
Sbjct: 197 AAEIPSVKPDILITE 211
>gi|55250298|gb|AAH85402.1| Cleavage and polyadenylation specific factor 3 [Danio rerio]
gi|182889046|gb|AAI64567.1| Cpsf3 protein [Danio rerio]
Length = 690
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 115/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 138 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LITE
Sbjct: 197 AAEIPSVKPDILITE 211
>gi|432954006|ref|XP_004085503.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oryzias latipes]
Length = 686
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 116/195 (59%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV E+ +T + +
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYIKVSNISADEM-LYTETDLED 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 138 SMEKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LITE
Sbjct: 197 AAEIPSVKPDILITE 211
>gi|303275006|ref|XP_003056813.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461165|gb|EEH58458.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 803
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 112/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV+ T GK +MFDCG+H Y P F + S +D +++TH
Sbjct: 23 LGAGSEVGRSCVMATYKGKSVMFDCGVHPGYAGIASLPYFDEVDLST-----VDALLVTH 77
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH A+PF + G I MT+PT+A+ +++ D+ K+ + E FT +
Sbjct: 78 FHLDHCAAVPFLVGHTNFKGRILMTHPTKAIFNMLMTDFVKLQKNNDSEA-LFTEQDLKA 136
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
+ + VD Q + +D +++ Y AGHVLGA MF+ + ++YTGDY+ TPDRHL
Sbjct: 137 AIAMIEVVDFHQEIVID-GMKVTPYRAGHVLGACMFFVDIDGLRVLYTGDYSRTPDRHLP 195
Query: 188 AARIDRLQLDLLITE 202
A + + ++I+E
Sbjct: 196 GADLPSVPPHVVISE 210
>gi|410074967|ref|XP_003955066.1| hypothetical protein KAFR_0A04950 [Kazachstania africana CBS 2517]
gi|372461648|emb|CCF55931.1| hypothetical protein KAFR_0A04950 [Kazachstania africana CBS 2517]
Length = 769
Score = 144 bits (363), Expect = 2e-32, Method: Composition-based stats.
Identities = 75/206 (36%), Positives = 120/206 (58%), Gaps = 12/206 (5%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAI 60
A LG G EVG+SC ++ GK IM D G+H AY P + DF+ +++
Sbjct: 8 AFKFFALGGGNEVGRSCHILQYKGKTIMLDAGIHPAYQGIASLPFYD------DFDLSSV 61
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVL---VDRRGEV 117
D ++I+HFHLDH +LP+ + + G ++MT+PT+A+ +L D+ +V ++ GE
Sbjct: 62 DILLISHFHLDHAASLPYVMQRTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGINSTGED 121
Query: 118 EQ-FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
+ +T + + E K+ +D TV V+ ++ AY+AGHVLGAAMF ++ +++TG
Sbjct: 122 DNLYTDEDLVESFDKIETIDYHSTVDVN-GIKFTAYHAGHVLGAAMFQIEIAGLRVLFTG 180
Query: 177 DYNMTPDRHLGAARIDRLQLDLLITE 202
DY+ DRHL +A + L D+LI E
Sbjct: 181 DYSRETDRHLNSAEVPPLSSDILIVE 206
>gi|213512037|ref|NP_001133354.1| cleavage and polyadenylation specificity factor subunit 3 [Salmo
salar]
gi|209151738|gb|ACI33081.1| Cleavage and polyadenylation specificity factor subunit 3 [Salmo
salar]
Length = 690
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 115/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 138 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LITE
Sbjct: 197 AAEIPSVKPDILITE 211
>gi|429965431|gb|ELA47428.1| hypothetical protein VCUG_01079 [Vavraia culicis 'floridensis']
Length = 642
Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/196 (42%), Positives = 113/196 (57%), Gaps = 17/196 (8%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNN------- 58
L LGAGQEVG+SC++V I K IMFDCG H+ +YP FS ISKS +
Sbjct: 4 LPLGAGQEVGRSCIIVKIKEKTIMFDCGTHLGLTGASKYPAFSLISKSPTIHTSDFSSFD 63
Query: 59 --AIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGE 116
+ID +++THFHLDH GALP Y+G + M+ PTR + P +LEDY K+
Sbjct: 64 LSSIDLVILTHFHLDHCGALPLLYR-NKYHGKVVMSTPTRCVLPFVLEDYCKL------N 116
Query: 117 VEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
V + + + M+ V+ +D+ VD + IR + AGHVLGAAMFY VG +++YTG
Sbjct: 117 VTNYGMEDVNVLMRNVVVMDVGMVGWVD-GIGIRVFSAGHVLGAAMFYVWVGGESVLYTG 175
Query: 177 DYNMTPDRHLGAARID 192
DY D HL +D
Sbjct: 176 DYTTGGDVHLDGCCVD 191
>gi|51467896|ref|NP_001003836.1| cleavage and polyadenylation specificity factor subunit 3 [Danio
rerio]
gi|49619053|gb|AAT68111.1| cleavage and polyadenylation specificity factor 3 [Danio rerio]
Length = 690
Score = 144 bits (362), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 115/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIILEFKGRKIMVDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 138 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LITE
Sbjct: 197 AAEIPSVKPDILITE 211
>gi|348518441|ref|XP_003446740.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oreochromis niloticus]
Length = 686
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 116/195 (59%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + +
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLED 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 138 SMEKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LITE
Sbjct: 197 AAEIPSVKPDILITE 211
>gi|403216468|emb|CCK70965.1| hypothetical protein KNAG_0F03030 [Kazachstania naganishii CBS
8797]
Length = 820
Score = 143 bits (360), Expect = 5e-32, Method: Composition-based stats.
Identities = 74/203 (36%), Positives = 118/203 (58%), Gaps = 13/203 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
LG G EVG+SC ++ GK IM D G+H AY P + DF+ + +D ++
Sbjct: 12 FALGGGNEVGRSCHIIQYKGKTIMLDAGVHPAYQGMASLPFYD------DFDLSTVDILL 65
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVL---VDRRGEVEQ-- 119
I+HFHLDH +LP+ + + G ++MT+PT+A+ +L D+ +V VD E+
Sbjct: 66 ISHFHLDHAASLPYVMQRTPFKGRVFMTHPTKAIYRWLLRDFVRVTAIGVDSTLAAEESL 125
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+T + +AE K+ +D TV+V+ ++ AY+AGHVLGAAMF ++ +++TGDY+
Sbjct: 126 YTDEDLAESFDKIETIDYHSTVEVN-GIKFTAYHAGHVLGAAMFQIEIAGLKILFTGDYS 184
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
DRHL +A + D+L+ E
Sbjct: 185 REMDRHLNSAEVPPQSSDILVVE 207
>gi|67969643|dbj|BAE01170.1| unnamed protein product [Macaca fascicularis]
Length = 684
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|7706427|ref|NP_057291.1| cleavage and polyadenylation specificity factor subunit 3 [Homo
sapiens]
gi|18203503|sp|Q9UKF6.1|CPSF3_HUMAN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; AltName: Full=mRNA 3'-end-processing
endonuclease CPSF-73
gi|6002955|gb|AAF00224.1|AF171877_1 cleavage and polyadenylation specificity factor 73 kDa subunit
[Homo sapiens]
gi|18044212|gb|AAH20211.1| Cleavage and polyadenylation specific factor 3, 73kDa [Homo
sapiens]
gi|62822309|gb|AAY14858.1| unknown [Homo sapiens]
gi|119621394|gb|EAX00989.1| cleavage and polyadenylation specific factor 3, 73kDa, isoform
CRA_a [Homo sapiens]
Length = 684
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|291233360|ref|XP_002736621.1| PREDICTED: cleavage and polyadenylation specific factor 3,
73kDa-like [Saccoglossus kowalevskii]
Length = 715
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 115/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P F I + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYFDLIEP-----DEIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G ++MT+ T+A+ +L DY KV + E +T + +
Sbjct: 79 FHLDHCGALPWFLQKTNFQGRVFMTHATKAIYRWLLSDYVKV-SNISTEQMLYTDNDLEN 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M ++ +D +V ++ Y AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 138 SMDRIETIDFHVETEV-LGVKFWCYNAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLITE 202
AA + ++ D+LI E
Sbjct: 197 AAELPSVRPDVLIIE 211
>gi|71682600|gb|AAI00570.1| Cpsf3 protein [Mus musculus]
Length = 512
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGTDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|402890043|ref|XP_003908303.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Papio anubis]
Length = 684
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|194220982|ref|XP_001502516.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Equus caballus]
gi|301775721|ref|XP_002923277.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Ailuropoda melanoleuca]
Length = 684
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|149050991|gb|EDM03164.1| cleavage and polyadenylation specificity factor 3, isoform CRA_a
[Rattus norvegicus]
Length = 685
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|31980904|ref|NP_061283.2| cleavage and polyadenylation specificity factor subunit 3 [Mus
musculus]
gi|341940395|sp|Q9QXK7.2|CPSF3_MOUSE RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; Short=mRNA 3'-end-processing endonuclease
CPSF-73
gi|23271024|gb|AAH23297.1| Cleavage and polyadenylation specificity factor 3 [Mus musculus]
Length = 684
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|410955844|ref|XP_003984560.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Felis catus]
Length = 686
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|354504216|ref|XP_003514173.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Cricetulus griseus]
Length = 684
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|147905468|ref|NP_001088278.1| cleavage and polyadenylation specific factor 3, 73kDa [Xenopus
laevis]
gi|54038587|gb|AAH84286.1| LOC495111 protein [Xenopus laevis]
Length = 692
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 138 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 197 AAEIPNIKPDILIIE 211
>gi|74221128|dbj|BAE42066.1| unnamed protein product [Mus musculus]
Length = 684
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|395507218|ref|XP_003757924.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Sarcophilus harrisii]
Length = 684
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|296224527|ref|XP_002758090.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Callithrix jacchus]
Length = 684
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|116283804|gb|AAH30988.1| CPSF3 protein [Homo sapiens]
Length = 554
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|332247248|ref|XP_003272765.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Nomascus leucogenys]
gi|67969340|dbj|BAE01022.1| unnamed protein product [Macaca fascicularis]
gi|355751093|gb|EHH55348.1| hypothetical protein EGM_04543 [Macaca fascicularis]
gi|380813676|gb|AFE78712.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
gi|383419123|gb|AFH32775.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
gi|384940728|gb|AFI33969.1| cleavage and polyadenylation specificity factor subunit 3 [Macaca
mulatta]
Length = 684
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|348558392|ref|XP_003465002.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Cavia porcellus]
Length = 684
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|335285899|ref|XP_003354974.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Sus scrofa]
Length = 684
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|126303222|ref|XP_001371997.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Monodelphis domestica]
Length = 684
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|350539083|ref|NP_001233296.1| cleavage and polyadenylation specificity factor subunit 3 [Pan
troglodytes]
gi|397513374|ref|XP_003826991.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Pan paniscus]
gi|426334660|ref|XP_004028859.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Gorilla gorilla gorilla]
gi|343961085|dbj|BAK62132.1| cleavage and polyadenylation specificity factor 73 kDa subunit [Pan
troglodytes]
gi|343961781|dbj|BAK62478.1| cleavage and polyadenylation specificity factor 73 kDa subunit [Pan
troglodytes]
gi|410254182|gb|JAA15058.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
gi|410291448|gb|JAA24324.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
gi|410339611|gb|JAA38752.1| cleavage and polyadenylation specific factor 3, 73kDa [Pan
troglodytes]
Length = 684
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|74178650|dbj|BAE33998.1| unnamed protein product [Mus musculus]
Length = 684
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|405963469|gb|EKC29039.1| Cleavage and polyadenylation specificity factor subunit 3
[Crassostrea gigas]
Length = 686
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG+GQEVG+SC ++ GK+IM DCG+H N P + +D ++I+H
Sbjct: 22 LGSGQEVGRSCHLLEFKGKKIMLDCGIHPGLNGFASLPFLDLVEV-----EEVDLLLISH 76
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F E + G +MT+ ++A+ +L DY KV + E +T I
Sbjct: 77 FHLDHCGALPYFLEKTQFKGRCFMTHASKAIYRWLLSDYVKV-SNIATEDMLYTESDIEN 135
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ Q V+V+ ++ Y AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 136 SMDKIETINFHQEVEVN-GIKFWCYTAGHVLGAAMFMIEIAGVRVLYTGDFSRQEDRHLM 194
Query: 188 AARIDRLQLDLLITE 202
AA I R+ D++I E
Sbjct: 195 AAEIPRIHPDVVIIE 209
>gi|71795627|ref|NP_001025201.1| cleavage and polyadenylation specificity factor subunit 3 [Rattus
norvegicus]
gi|71121802|gb|AAH99817.1| Cleavage and polyadenylation specificity factor 3 [Rattus
norvegicus]
Length = 685
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGMKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|27805863|ref|NP_776709.1| cleavage and polyadenylation specificity factor subunit 3 [Bos
taurus]
gi|426223116|ref|XP_004005724.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Ovis aries]
gi|18202362|sp|P79101.1|CPSF3_BOVIN RecName: Full=Cleavage and polyadenylation specificity factor
subunit 3; AltName: Full=Cleavage and polyadenylation
specificity factor 73 kDa subunit; Short=CPSF 73 kDa
subunit; AltName: Full=mRNA 3'-end-processing
endonuclease CPSF-73
gi|1707412|emb|CAA65151.1| Cleavage and Polyadenylation Specifity Factor protein [Bos taurus]
gi|75773721|gb|AAI04554.1| Cleavage and polyadenylation specific factor 3, 73kDa [Bos taurus]
gi|296482248|tpg|DAA24363.1| TPA: cleavage and polyadenylation specificity factor subunit 3 [Bos
taurus]
gi|440897562|gb|ELR49218.1| Cleavage and polyadenylation specificity factor subunit 3 [Bos
grunniens mutus]
Length = 684
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|417412420|gb|JAA52597.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit, partial [Desmodus rotundus]
Length = 714
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 47 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 101
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 102 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 160
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 161 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 219
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 220 AAEIPNIKPDILIIE 234
>gi|359321645|ref|XP_003639652.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Canis lupus familiaris]
Length = 717
Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 50 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 104
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 105 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 163
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 164 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 222
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 223 AAEIPNIKPDILIIE 237
>gi|348531581|ref|XP_003453287.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Oreochromis niloticus]
Length = 690
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 138 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 197 AAEIPSVKPDILIIE 211
>gi|307177772|gb|EFN66769.1| Cleavage and polyadenylation specificity factor subunit 3 [Camponotus
floridanus]
Length = 1750
Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats.
Identities = 77/198 (38%), Positives = 115/198 (58%), Gaps = 13/198 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P + + ID ++I+H
Sbjct: 1088 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEA-----DEIDLLLISH 1142
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + E +T +
Sbjct: 1143 FHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKV-SNIATEQMLYTESDLET 1201
Query: 128 CMKKVIAVDLKQTVQVDKD---LQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
M K+ ++ + +KD ++ AY AGHVLGAAMF ++ ++YTGD++ DR
Sbjct: 1202 SMDKIETINFHE----EKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDR 1257
Query: 185 HLGAARIDRLQLDLLITE 202
HL AA I + D+LITE
Sbjct: 1258 HLMAAEIPNIHPDVLITE 1275
>gi|291412514|ref|XP_002722528.1| PREDICTED: cleavage and polyadenylation specific factor 3, 73kDa
[Oryctolagus cuniculus]
Length = 684
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|297265405|ref|XP_002799184.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Macaca mulatta]
Length = 564
Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|300676780|gb|ADK26656.1| cleavage and polyadenylation specific factor 3, 73kDa [Zonotrichia
albicollis]
Length = 721
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 54 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 108
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 109 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 167
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 168 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 226
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 227 AAEIPNIKPDILIIE 241
>gi|6625904|gb|AAF19420.1|AF203969_1 cleavage and polyadenylation specificity factor 73 kDa subunit [Mus
musculus]
Length = 684
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|74211665|dbj|BAE29190.1| unnamed protein product [Mus musculus]
Length = 684
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|148702078|gb|EDL34025.1| cleavage and polyadenylation specificity factor 3, isoform CRA_b
[Mus musculus]
Length = 701
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 34 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 88
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 89 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 147
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 148 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 206
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 207 AAEIPNIKPDILIIE 221
>gi|351704796|gb|EHB07715.1| Cleavage and polyadenylation specificity factor subunit 3
[Heterocephalus glaber]
Length = 692
Score = 142 bits (358), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|149050992|gb|EDM03165.1| cleavage and polyadenylation specificity factor 3, isoform CRA_b
[Rattus norvegicus]
Length = 605
Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|449498153|ref|XP_002196255.2| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3 [Taeniopygia guttata]
Length = 746
Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 79 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 133
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 134 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 192
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 193 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 251
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 252 AAEIPNIKPDILIIE 266
>gi|126030713|pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
gi|126030714|pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
Length = 459
Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|221106537|ref|XP_002161150.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Hydra magnipapillata]
Length = 677
Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 112/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+ + GK+++ D G+H YN P I +D ++I+H
Sbjct: 15 LGAGQEVGRSCIFIEFKGKKLLLDLGIHPGYNGLDSLPFIDEIDP-----GEVDLLLISH 69
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH G LP+F E + G ++MT+PT+A+ +L DY KV + + +T + +
Sbjct: 70 FHLDHCGGLPWFLEKTHFKGRVFMTHPTKAIYRWLLADYIKV-SNISADQMLYTEKDLEK 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ + Q +V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 129 SMDKIETMHFHQEKEV-SGIKFWAYNAGHVLGAAMFMIEIAGVNILYTGDFSRQEDRHLM 187
Query: 188 AARIDRLQLDLLITE 202
+A I + D+LI E
Sbjct: 188 SAEIPNISPDVLIME 202
>gi|55741994|ref|NP_001006770.1| cleavage and polyadenylation specificity factor 3 [Xenopus
(Silurana) tropicalis]
gi|49522504|gb|AAH75564.1| cleavage and polyadenylation specific factor 3, 73kDa [Xenopus
(Silurana) tropicalis]
Length = 692
Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 138 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 197 AAEIPNVKPDILIIE 211
>gi|89267474|emb|CAJ83498.1| cleavage and polyadenylation specific factor 3 [Xenopus (Silurana)
tropicalis]
Length = 692
Score = 142 bits (358), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 138 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 197 AAEIPNVKPDILIIE 211
>gi|170060909|ref|XP_001866010.1| cleavage and polyadenylation specificity factor [Culex
quinquefasciatus]
gi|167879247|gb|EDS42630.1| cleavage and polyadenylation specificity factor [Culex
quinquefasciatus]
Length = 688
Score = 142 bits (357), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 77/195 (39%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + +D + I+H
Sbjct: 24 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLIEA-----DEVDLLFISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ ML DY KV + E +T +
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWMLSDYIKV-SNISTEQMLYTEADLEA 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 138 SMEKIETINFHEERDV-MGVRFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LITE
Sbjct: 197 AAEIPTMKPDVLITE 211
>gi|159488791|ref|XP_001702386.1| subunit of mRNA cleavage and polyadenylation specificity factor
[Chlamydomonas reinhardtii]
gi|158271180|gb|EDO97006.1| subunit of mRNA cleavage and polyadenylation specificity factor
[Chlamydomonas reinhardtii]
Length = 690
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 109/195 (55%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SC++ K +MFDCG+H A+ P I + +D +ITH
Sbjct: 4 LGAGSEVGRSCIIFKYQDKTVMFDCGIHPAFKGMDSLPLLDEIDI-----DTVDVALITH 58
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH A+P+ + G I+MT+PT+A+ +L D K E F D +
Sbjct: 59 FHLDHCAAVPYLLRKTRFKGRIFMTHPTKAIYYSLLRDLAKG-SKHSSEEALFNEDDLEA 117
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+++ VD QT++V +QI Y AGHVLGAAMF +V +YTGDY+ PDRHL
Sbjct: 118 SMQRIEVVDFYQTIEV-AGMQITPYRAGHVLGAAMFLVEVAGCRCLYTGDYSRLPDRHLP 176
Query: 188 AARIDRLQLDLLITE 202
AA I ++ ++I E
Sbjct: 177 AADIPPVKPHIVIVE 191
>gi|62898706|dbj|BAD97207.1| cleavage and polyadenylation specific factor 3, 73kDa variant [Homo
sapiens]
Length = 684
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETVLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|340383473|ref|XP_003390242.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Amphimedon queenslandica]
Length = 726
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 79/202 (39%), Positives = 114/202 (56%), Gaps = 21/202 (10%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ K+IM DCG+H + P I ++ ID ++ITH
Sbjct: 68 LGAGQEVGRSCIMLEFKNKKIMLDCGIHPGLSGMDALPYTDMIE-----SDEIDLLLITH 122
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH--- 124
FHLDH GALP+F E + G ++MT T+A+ +L DY K V +SDH
Sbjct: 123 FHLDHCGALPWFLEKTTFKGRVFMTPATKAIYRWLLSDYIK--------VSNISSDHMLY 174
Query: 125 ----IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+ + M K+ ++ Q V V ++ AY AGHVLGAAMF ++ ++YTGD++
Sbjct: 175 TEKDLEKSMDKIEIINFHQEVDVS-GIKFTAYNAGHVLGAAMFMIEIAGVKVLYTGDFSR 233
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL AA + D+LI+E
Sbjct: 234 VEDRHLMAAEVPNSSPDILISE 255
>gi|307199387|gb|EFN80012.1| Cleavage and polyadenylation specificity factor subunit 3
[Harpegnathos saltator]
Length = 685
Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 78/198 (39%), Positives = 115/198 (58%), Gaps = 13/198 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GKRIM DCG+H + P + + ID ++I+H
Sbjct: 23 LGAGQEVGRSCIMLEFKGKRIMLDCGIHPGLSGMDALPFVDLVEA-----DEIDLLLISH 77
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + E +T +
Sbjct: 78 FHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKV-SNIATEQMLYTESDLET 136
Query: 128 CMKKVIAVDLKQTVQVDKD---LQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
M K+ ++ + +KD ++ AY AGHVLGAAMF ++ ++YTGD++ DR
Sbjct: 137 SMDKIETINFHE----EKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDR 192
Query: 185 HLGAARIDRLQLDLLITE 202
HL AA I + D+LITE
Sbjct: 193 HLMAAEIPNIHPDVLITE 210
>gi|410898094|ref|XP_003962533.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Takifugu rubripes]
Length = 691
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV E+ +D + E
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADEMLYAETD-LEE 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 138 SMDKIETINFHEVREV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 197 AAEIPSVKPDILIIE 211
>gi|242007002|ref|XP_002424331.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Pediculus humanus corporis]
gi|212507731|gb|EEB11593.1| Cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Pediculus humanus corporis]
Length = 692
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 116/195 (59%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK +M DCG+H + P I + ID +++TH
Sbjct: 25 LGAGQEVGRSCIMLEFKGKNVMLDCGIHPGLSGLDALPFVDLIEA-----DEIDLLLVTH 79
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + G +MT+ T+A+ +L DY KV + E +T + E
Sbjct: 80 FHLDHSGALPWFLLKTKFKGRCFMTHATKAIYRWLLSDYIKV-SNISTEQMLYTDHDLEE 138
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + ++ ++ AY+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 139 SMEKIETINFHEEKEI-FGIKFWAYHAGHVLGAAMFMIEIAGVRVLYTGDFSRQEDRHLM 197
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LITE
Sbjct: 198 AAEIPSIKPDVLITE 212
>gi|47230093|emb|CAG10507.1| unnamed protein product [Tetraodon nigroviridis]
Length = 730
Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 14 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV E+ +D + E
Sbjct: 69 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVSNISADEMLYAETD-LEE 127
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 128 SMDKIETINFHEVREV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 186
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 187 AAEIPSVKPDILIIE 201
>gi|384252038|gb|EIE25515.1| Metallo-hydrolase/oxidoreductase [Coccomyxa subellipsoidea C-169]
Length = 696
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 118/197 (59%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SCV++ GK +MFDCG+H ++ + P F I +++D +++TH
Sbjct: 16 LGAGQEVGRSCVILKYMGKTVMFDCGVHPGFSGEQSLPYFDSIDL-----DSVDLMLVTH 70
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH A+P+ + G I+MT+PT+A+ ++L+D KV RG + ++ +
Sbjct: 71 FHLDHCAAVPYVVGKTVFKGRIFMTHPTKAIFGMLLKDSVKV---SRGATDAGLYSEKDV 127
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
+++ +D QT+ VD +++ A+ AGHVLGAAMF ++ +YTGDY+ DRH
Sbjct: 128 EAALERTELLDFHQTIDVD-GIKVTAWRAGHVLGAAMFMVEIAGMRALYTGDYSRLADRH 186
Query: 186 LGAARIDRLQLDLLITE 202
+ AA + ++I E
Sbjct: 187 MSAADLPSPPPHIVIVE 203
>gi|429243009|ref|NP_594263.2| mRNA cleavage and polyadenylation specificity factor complex
endoribonuclease subunit Ysh1 [Schizosaccharomyces pombe
972h-]
gi|384872669|sp|O13794.2|YSH1_SCHPO RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|347834169|emb|CAB16227.2| mRNA cleavage and polyadenylation specificity factor complex
endoribonuclease subunit Ysh1 [Schizosaccharomyces
pombe]
Length = 757
Score = 141 bits (355), Expect = 2e-31, Method: Composition-based stats.
Identities = 71/195 (36%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SC V+ GK +M D G+H AY P F S +D ++I+H
Sbjct: 24 LGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFDLS-----TVDVLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH+ +LP+ + + G ++MT+PT+A+ +L DY KV + E + + +
Sbjct: 79 FHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKV-SNVGMEDQLYDEKDLLA 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
++ AVD T++V+ ++ Y+AGHVLGA M++ ++ +++TGDY+ DRHL
Sbjct: 138 AFDRIEAVDYHSTIEVE-GIKFTPYHAGHVLGACMYFVEMAGVNILFTGDYSREEDRHLH 196
Query: 188 AARIDRLQLDLLITE 202
A + + D+LITE
Sbjct: 197 VAEVPPKRPDVLITE 211
>gi|15079675|gb|AAH11654.1| Cleavage and polyadenylation specific factor 3, 73kDa [Homo
sapiens]
gi|157929136|gb|ABW03853.1| cleavage and polyadenylation specific factor 3, 73kDa [synthetic
construct]
Length = 684
Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHGVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>gi|403270697|ref|XP_003927303.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Saimiri boliviensis boliviensis]
Length = 658
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 113/194 (58%), Gaps = 7/194 (3%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+HF
Sbjct: 22 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISHF 76
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 77 HLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEES 135
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL A
Sbjct: 136 MDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMA 194
Query: 189 ARIDRLQLDLLITE 202
A I ++ D+LI E
Sbjct: 195 AEIPNIKPDILIIE 208
>gi|363732494|ref|XP_419942.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
3 [Gallus gallus]
Length = 672
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 113/194 (58%), Gaps = 7/194 (3%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+HF
Sbjct: 5 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISHF 59
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 60 HLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEES 118
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL A
Sbjct: 119 MDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMA 177
Query: 189 ARIDRLQLDLLITE 202
A I ++ D+LI E
Sbjct: 178 AEIPNIKPDILIIE 191
>gi|124505029|ref|XP_001351256.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
gi|3758842|emb|CAB11127.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
Length = 1017
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 72/175 (41%), Positives = 103/175 (58%), Gaps = 31/175 (17%)
Query: 57 NNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGE 116
N IDC++I+HFH+DHIGALPFFTEI Y G I M+YPT+AL+PI+L D +V D + E
Sbjct: 167 NEIIDCVIISHFHMDHIGALPFFTEILKYRGIILMSYPTKALSPILLLDSCRV-TDMKWE 225
Query: 117 VEQF-----------------------------TSDHIAECMKKVIAVDLKQTVQVDKDL 147
+ F D+I C+ KVI + + +T ++ D+
Sbjct: 226 KKNFERQIKMLNEKSDELLNYNINCIKKDPWNINEDNIYNCIDKVIGLQINETFELG-DM 284
Query: 148 QIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
I YYAGHVLGA ++ +V + +++YTGDYN PD+HLG+A I L ++ I+E
Sbjct: 285 SITPYYAGHVLGACIYKIEVRNFSVIYTGDYNTIPDKHLGSANIPSLNPEIFISE 339
Score = 67.0 bits (162), Expect = 4e-09, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 37/49 (75%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCD 55
VLGAGQ VG+SCV+V + +++MFDCG H+ Y D R+YP+F+ + + D
Sbjct: 13 VLGAGQTVGRSCVIVELENRKVMFDCGCHLGYKDERKYPNFNLLIRGPD 61
>gi|431911821|gb|ELK13965.1| Cleavage and polyadenylation specificity factor subunit 3, partial
[Pteropus alecto]
Length = 667
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 113/194 (58%), Gaps = 7/194 (3%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+HF
Sbjct: 1 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISHF 55
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 56 HLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEES 114
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL A
Sbjct: 115 MDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMA 173
Query: 189 ARIDRLQLDLLITE 202
A I ++ D+LI E
Sbjct: 174 AEIPNIKPDILIIE 187
>gi|449435478|ref|XP_004135522.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-I-like [Cucumis sativus]
Length = 481
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 78/197 (39%), Positives = 112/197 (56%), Gaps = 10/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK ++FDCG+H AY+ P F I S ID ++ITH
Sbjct: 29 LGAGNEVGRSCVYMSYKGKIVLFDCGIHPAYSGMAALPYFDEIDPST-----IDVLLITH 83
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH--I 125
FHLDH +LP+F E + G ++MTY T+A+ ++L D+ KV + VE D I
Sbjct: 84 FHLDHAASLPYFLEKTTFKGRVFMTYATKAIYKLLLLDFVKV---SKVSVEDMLYDEQDI 140
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
+ M K+ +D QTV+V+ + +LGAAMF + ++YTGDY+ DRH
Sbjct: 141 SRSMDKIEVIDFHQTVEVNGIRFLWCXLIRKMLGAAMFMVDIAGVRVLYTGDYSREEDRH 200
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+ I E
Sbjct: 201 LRAAEMPQFSPDVCIIE 217
>gi|367005895|ref|XP_003687679.1| hypothetical protein TPHA_0K01110 [Tetrapisispora phaffii CBS 4417]
gi|357525984|emb|CCE65245.1| hypothetical protein TPHA_0K01110 [Tetrapisispora phaffii CBS 4417]
Length = 790
Score = 140 bits (354), Expect = 2e-31, Method: Composition-based stats.
Identities = 72/199 (36%), Positives = 116/199 (58%), Gaps = 10/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK IM D G+H AY P + S +D ++I+H
Sbjct: 14 LGGGNEVGRSCHILQYKGKTIMLDAGVHPAYQGLASLPFYDEFDLS-----TVDILLISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ----FTSD 123
FHLDH +LP+ + +NG ++MT+PT+A+ +L+D+ +V E+ +T +
Sbjct: 69 FHLDHAASLPYVMQRTNFNGRVFMTHPTKAIYRWLLKDFVRVTSIGGSPNEKDDNLYTDE 128
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
++E ++ +D T+ V+ ++ A++AGHVLGAAMF ++G +++TGDY+ D
Sbjct: 129 DLSESFDRIETIDYHSTMDVN-GIKFTAFHAGHVLGAAMFQIELGSLRVLFTGDYSRELD 187
Query: 184 RHLGAARIDRLQLDLLITE 202
RHL +A I L D+LI E
Sbjct: 188 RHLNSAEIPPLASDVLIVE 206
>gi|328773999|gb|EGF84036.1| hypothetical protein BATDEDRAFT_9083 [Batrachochytrium
dendrobatidis JAM81]
Length = 669
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 107/184 (58%), Gaps = 9/184 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SC+++ GK IM DCG+H A++ P F I ++D ++ITH
Sbjct: 62 LGAGNEVGRSCILLEFKGKTIMLDCGLHPAHSGLAALPFFDNIDP-----ESVDLVLITH 116
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH-IA 126
FH+DH LP+F E + G ++MT+PTRA+ ++ DY K + +Q SD +A
Sbjct: 117 FHVDHAAGLPYFMEKTAFKGRVFMTHPTRAIYKWLVSDYIK--ISSLSPDDQLYSDKDLA 174
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
++ +D Q V + ++ YYAGHVLGAAMF ++ ++YTGDY+ DRHL
Sbjct: 175 NSYGRIEVIDYHQEVDLG-GIKFTPYYAGHVLGAAMFLLEIAGVRLLYTGDYSREEDRHL 233
Query: 187 GAAR 190
AA
Sbjct: 234 MAAE 237
>gi|322786053|gb|EFZ12664.1| hypothetical protein SINV_01905 [Solenopsis invicta]
Length = 686
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 115/198 (58%), Gaps = 13/198 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P + + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEA-----DEIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + E +T +
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKV-SNIATEQMLYTESDLET 137
Query: 128 CMKKVIAVDLKQTVQVDKD---LQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
M K+ ++ + +KD ++ AY AGHVLGAAMF ++ ++YTGD++ DR
Sbjct: 138 SMDKIETINFHE----EKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDR 193
Query: 185 HLGAARIDRLQLDLLITE 202
HL AA I + D+LITE
Sbjct: 194 HLMAAEIPNIHPDVLITE 211
>gi|380012076|ref|XP_003690115.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Apis florea]
Length = 686
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 115/198 (58%), Gaps = 13/198 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P + + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEA-----DEIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + E +T +
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKV-SNIATEQMLYTESDLET 137
Query: 128 CMKKVIAVDLKQTVQVDKD---LQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
M K+ ++ + +KD ++ AY AGHVLGAAMF ++ ++YTGD++ DR
Sbjct: 138 SMDKIETINFHE----EKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDR 193
Query: 185 HLGAARIDRLQLDLLITE 202
HL AA I + D+LITE
Sbjct: 194 HLMAAEIPNIHPDVLITE 211
>gi|443725897|gb|ELU13297.1| hypothetical protein CAPTEDRAFT_184406 [Capitella teleta]
Length = 668
Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/194 (39%), Positives = 113/194 (58%), Gaps = 7/194 (3%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQEVG+SC+++ GK+IM D G+H + P I ID ++++HF
Sbjct: 6 GAGQEVGRSCIMLEFKGKKIMLDIGIHPGMSGMDALPYTDAIEPE-----EIDLLLVSHF 60
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH G LP+F E G+ G +MT+ ++A+ +L DY KV + E + + I
Sbjct: 61 HLDHAGGLPWFLEKTGFKGRCFMTHASKAIYRWLLSDYVKV-SNIATEQQLYQDSDIEAS 119
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M K+ V+ Q +V+ ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL A
Sbjct: 120 MDKIETVNFHQETEVN-GIKFCAYTAGHVLGAAMFMIEIAGVKVLYTGDFSREEDRHLMA 178
Query: 189 ARIDRLQLDLLITE 202
A I ++ D+LITE
Sbjct: 179 AEIPNVKPDVLITE 192
>gi|167526212|ref|XP_001747440.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163774275|gb|EDQ87907.1| predicted protein [Monosiga brevicollis MX1]
Length = 668
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/201 (39%), Positives = 113/201 (56%), Gaps = 9/201 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
+ + LGAGQEVG+SC ++T G IM DCG H A + Q P + S +D
Sbjct: 24 LSIMPLGAGQEVGRSCHIITYKGFTIMLDCGTHPAKSGLAQLPYVDEVDLS-----QVDF 78
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+THFH+DH GALP+ + G ++MT+ T+A+ ML DY V ++ + Q S
Sbjct: 79 CFVTHFHVDHCGALPWLLSKTPFKGRVFMTHATKAVYQWMLTDY--VRINATTDDNQLFS 136
Query: 123 DH-IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
D I MK++ VD +QTV + + L Y AGHVLGA MF + ++YTGD++
Sbjct: 137 DKDIENTMKRIETVDFEQTVML-RGLSFTPYSAGHVLGACMFEIDIAGVKLLYTGDFSRD 195
Query: 182 PDRHLGAARIDRLQLDLLITE 202
DRHL AA I ++ D+LI E
Sbjct: 196 EDRHLMAASIPPIKPDILIAE 216
>gi|383861262|ref|XP_003706105.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Megachile rotundata]
Length = 686
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 115/198 (58%), Gaps = 13/198 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P + + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEA-----DEIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + E +T +
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWLLSDYIKV-SNIATEQMLYTESDLET 137
Query: 128 CMKKVIAVDLKQTVQVDKD---LQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
M K+ ++ + +KD ++ AY AGHVLGAAMF ++ ++YTGD++ DR
Sbjct: 138 SMDKIETINFHE----EKDVFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDR 193
Query: 185 HLGAARIDRLQLDLLITE 202
HL AA I + D+LITE
Sbjct: 194 HLMAAEIPNIHPDVLITE 211
>gi|255724858|ref|XP_002547358.1| hypothetical protein CTRG_01665 [Candida tropicalis MYA-3404]
gi|240135249|gb|EER34803.1| hypothetical protein CTRG_01665 [Candida tropicalis MYA-3404]
Length = 783
Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats.
Identities = 69/204 (33%), Positives = 118/204 (57%), Gaps = 15/204 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM DCGMH A + H +P F S +D ++I+H
Sbjct: 18 LGGCNEVGRSCHIIEYKNKVIMLDCGMHPALSGHASFPYFDEYDIS-----KVDILLISH 72
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV--LVDRRGEV-------E 118
FH+DH +LP+ + + G ++MT+ T+A+ +++D+ +V + R E
Sbjct: 73 FHVDHSASLPYIMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGSSRAEAGGKDEGSN 132
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDY 178
+T D I + ++ +D T+++D ++ AY+AGHVLGA M++ ++G +++TGDY
Sbjct: 133 LYTDDDIMKSFDRIETIDYHSTMEID-GIRFTAYHAGHVLGACMYFIEIGGLKVLFTGDY 191
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
+ +RHL AA + L+ D+LI+E
Sbjct: 192 SREENRHLHAAEVPPLKPDILISE 215
>gi|157117185|ref|XP_001652976.1| cleavage and polyadenylation specificity factor [Aedes aegypti]
gi|108876120|gb|EAT40345.1| AAEL007904-PA [Aedes aegypti]
Length = 687
Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + +D + I+H
Sbjct: 24 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLIEA-----DEVDLLFISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ ML DY KV + + +T +
Sbjct: 79 FHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWMLSDYIKV-SNISTDQMLYTEADLEA 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 138 SMEKIETINFHEERDV-MGVRFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LITE
Sbjct: 197 AAEIPAMKPDVLITE 211
>gi|403373777|gb|EJY86813.1| Cleavage and polyadenylation specificity factor subunit 3
[Oxytricha trifallax]
Length = 755
Score = 140 bits (352), Expect = 3e-31, Method: Composition-based stats.
Identities = 72/198 (36%), Positives = 115/198 (58%), Gaps = 13/198 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SC+ + GK+IM DCG+H + + P F I+ +D I+ITH
Sbjct: 32 LGAGCEVGRSCIYLECKGKKIMLDCGIHPGKDGVQALPYFDVINP-----KELDLILITH 86
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---LVDRRGEVEQFTSDH 124
FH+DH LP+F E + G +YMT+PT+++ +++D+ KV +D + F +
Sbjct: 87 FHVDHCAGLPYFLEKTDFKGKVYMTHPTKSIYNYVMQDFVKVSNIAIDEK----LFDEND 142
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
+ + K+ +D Q V+ + ++ Y AGHVLGA+MF ++ ++YTGDY+ DR
Sbjct: 143 LKNTLDKIYMLDYHQEVE-ENGIKFSCYRAGHVLGASMFLIEIDGVKILYTGDYSREEDR 201
Query: 185 HLGAARIDRLQLDLLITE 202
HL A + ++D+LI E
Sbjct: 202 HLKPAELPNCEVDVLIVE 219
>gi|363750442|ref|XP_003645438.1| hypothetical protein Ecym_3113 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889072|gb|AET38621.1| Hypothetical protein Ecym_3113 [Eremothecium cymbalariae
DBVPG#7215]
Length = 773
Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats.
Identities = 72/202 (35%), Positives = 115/202 (56%), Gaps = 14/202 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG EVG+SC ++ GK +M D G+H A+ P + +FN + +D ++I+
Sbjct: 16 LGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYD------EFNLSKVDVLLIS 69
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVL------VDRRGEVEQF 120
HFHLDH +LP+ + + G ++MT+PT+A+ +L D+ KV G+ +
Sbjct: 70 HFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNGTAASSGDENLY 129
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T + +AE K+ VD T+ V+ ++ AY+AGHVLGAAMF ++ +++TGDY+
Sbjct: 130 TDEDLAESFDKIETVDFHSTIDVN-GIKFTAYHAGHVLGAAMFQVEIAGLRILFTGDYSR 188
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL +A + L D+LI E
Sbjct: 189 ELDRHLNSAEVPSLPSDILIVE 210
>gi|432100623|gb|ELK29151.1| Cleavage and polyadenylation specificity factor subunit 3 [Myotis
davidii]
Length = 684
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYN--DHRQYPDFSRISKSCDFNNAIDCIVI 65
LGAGQEVG+SC+++ G++IM DCG+H D Y D ++ ID ++I
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALAYIDLIDPAE-------IDLLLI 69
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
+HFHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T +
Sbjct: 70 SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDL 128
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
E M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRH
Sbjct: 129 EESMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRH 187
Query: 186 LGAARIDRLQLDLLITE 202
L AA I ++ D+LI E
Sbjct: 188 LMAAEIPNIKPDILIIE 204
>gi|156552097|ref|XP_001605081.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Nasonia vitripennis]
Length = 688
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 116/195 (59%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P F I ++ + ID ++I+H
Sbjct: 27 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGLDALP-FVDIIEA----DEIDLLLISH 81
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + E +T +
Sbjct: 82 FHLDHCGALPWFLQKTNFKGRCFMTHATKAIYRWLLSDYIKV-SNIATEQMLYTEADLES 140
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 141 SMDKIETINFHEEKDV-YGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLM 199
Query: 188 AARIDRLQLDLLITE 202
AA I + D+LITE
Sbjct: 200 AAEIPNVHPDVLITE 214
>gi|326916480|ref|XP_003204535.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Meleagris gallopavo]
Length = 759
Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 113/194 (58%), Gaps = 7/194 (3%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+HF
Sbjct: 92 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISHF 146
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 147 HLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEES 205
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL A
Sbjct: 206 MDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMA 264
Query: 189 ARIDRLQLDLLITE 202
A I ++ D+LI E
Sbjct: 265 AEIPNIKPDILIIE 278
>gi|210075949|ref|XP_504965.2| YALI0F03817p [Yarrowia lipolytica]
gi|223634672|sp|Q6C2Z7.2|YSH1_YARLI RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|199424917|emb|CAG77772.2| YALI0F03817p [Yarrowia lipolytica CLIB122]
Length = 827
Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 115/197 (58%), Gaps = 6/197 (3%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
+ LG G+EVG+SC V++ GK IM D G+H A++ P + S ID ++I
Sbjct: 40 VALGGGREVGRSCHVISFKGKTIMLDAGVHPAHSGLASLPFYDEFDLST-----IDILLI 94
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
+HFHLDH +LP+ + + G ++MT+PT+ + +L D+ +V + + ++ +
Sbjct: 95 SHFHLDHAASLPYVMQKTNFKGRVFMTHPTKGIYRWLLSDFVRVTSGAESDPDLYSEADL 154
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
K+ +D T++V+ ++ AY+AGHVLGAAM+ +VG +++TGDY+ DRH
Sbjct: 155 TASFNKIETIDYHSTMEVN-GVKFTAYHAGHVLGAAMYTIEVGGVKVLFTGDYSREEDRH 213
Query: 186 LGAARIDRLQLDLLITE 202
L A + ++ D+LI E
Sbjct: 214 LNQAEVPPMKPDILICE 230
>gi|321461562|gb|EFX72593.1| hypothetical protein DAPPUDRAFT_308207 [Daphnia pulex]
Length = 689
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 115/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + ID ++I+H
Sbjct: 23 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLIEA-----DQIDLLLISH 77
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T +
Sbjct: 78 FHLDHCGALPWFLQKTTFKGRCFMTHATKAIYRWLLSDYIKV-SNISTDQMLYTEADLEA 136
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 137 SMEKIEVINFHEEKDVG-GVRFWAYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLM 195
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LITE
Sbjct: 196 AAEIPTVRPDILITE 210
>gi|219121689|ref|XP_002181194.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407180|gb|EEC47117.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 602
Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/197 (40%), Positives = 116/197 (58%), Gaps = 8/197 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG+GQEVG+SC ++ G I+ DCG+H Y+ P RI + +D ++ITH
Sbjct: 10 LGSGQEVGRSCHLLEFRGMTILLDCGIHPGYDGLNGLPYLDRIEP-----DQVDVLLITH 64
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH+ +LP+ TE + G I+MT+PT+A+ ++L DY ++L + + E +T +
Sbjct: 65 FHLDHVASLPYLTERTSFKGRIFMTHPTKAVTRLLLGDYLRLLQMKNAKPEDVLYTEADL 124
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
C+ K+ +D TV V L A AGHVLGA MF+ +G ++YTGDY+M DRH
Sbjct: 125 QSCIDKIELMDFHTTVTVG-GLSFYALNAGHVLGACMFFLSLGGRKILYTGDYSMEDDRH 183
Query: 186 LGAARIDRLQLDLLITE 202
L AA I D+LI E
Sbjct: 184 LMAAEIPAESPDVLIVE 200
>gi|328704356|ref|XP_001945120.2| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Acyrthosiphon pisum]
Length = 694
Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 79/195 (40%), Positives = 112/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+V+ GK+IM DCG+H P I N ID ++ITH
Sbjct: 27 LGAGQEVGRSCIVMEFKGKKIMLDCGIHPGLQGLDALPFVDLIEA-----NEIDLLLITH 81
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + G YMT+ T+A+ +L DY KV + E +T + +
Sbjct: 82 FHLDHSGALPWFLLKTKFKGKCYMTHATKAIYRWLLSDYIKV-SNIGTEQMLYTEADLEK 140
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M ++ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 141 SMDRIETINFHEEKDVG-GIRFCAYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLM 199
Query: 188 AARIDRLQLDLLITE 202
AA I + ++LITE
Sbjct: 200 AAEIPPSRPEILITE 214
>gi|398022636|ref|XP_003864480.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
gi|322502715|emb|CBZ37798.1| cleavage and polyadenylation specificity factor, putative
[Leishmania donovani]
Length = 756
Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 113/200 (56%), Gaps = 9/200 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ L +G+G EVG+SCVVV G+ +M DCG H A + P F I CD ID
Sbjct: 26 VEVLPIGSGGEVGRSCVVVRYKGRGVMLDCGNHPAKSGLDSLPFFDSIK--CD---EIDV 80
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++ITHFHLDH GALP+F + G I+MT T+A +++ D+ ++ G + TS
Sbjct: 81 VLITHFHLDHCGALPYFCNQTSFKGRIFMTSATKAFYKMVMNDFLRIGA---GASDLVTS 137
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + + ++ V+ + V V+ + + + AGHVLGAAMF + +YTGD++ P
Sbjct: 138 EWLQSTIDRIETVEYHEEVTVN-GISFQPFNAGHVLGAAMFMVDIAGMRALYTGDFSRVP 196
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A + D+LI E
Sbjct: 197 DRHLLGAEVPPYSPDILIAE 216
>gi|146099573|ref|XP_001468678.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
gi|134073046|emb|CAM71766.1| putative cleavage and polyadenylation specificity factor
[Leishmania infantum JPCM5]
Length = 756
Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 113/200 (56%), Gaps = 9/200 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ L +G+G EVG+SCVVV G+ +M DCG H A + P F I CD ID
Sbjct: 26 VEVLPIGSGGEVGRSCVVVRYKGRGVMLDCGNHPAKSGLDSLPFFDSIK--CD---EIDV 80
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++ITHFHLDH GALP+F + G I+MT T+A +++ D+ ++ G + TS
Sbjct: 81 VLITHFHLDHCGALPYFCNQTSFKGRIFMTSATKAFYKMVMNDFLRIGA---GASDLVTS 137
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + + ++ V+ + V V+ + + + AGHVLGAAMF + +YTGD++ P
Sbjct: 138 EWLQSTIDRIETVEYHEEVTVN-GISFQPFNAGHVLGAAMFMVDIAGMRALYTGDFSRVP 196
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A + D+LI E
Sbjct: 197 DRHLLGAEVPPYSPDILIAE 216
>gi|452819966|gb|EME27015.1| cleavage and polyadenylation specifity factor protein [Galdieria
sulphuraria]
Length = 717
Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 74/184 (40%), Positives = 108/184 (58%), Gaps = 11/184 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV++T K IMFDCG+H AY+ P F + +ID I+ITH
Sbjct: 29 LGAGNEVGRSCVLLTYKNKTIMFDCGVHPAYSGLASLPFFDEMDP-----RSIDLILITH 83
Query: 68 FHLDHIGALPFFTEI--CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
FHLDH ALP+ E C N ++MT+PT+A+ +L D+ +V E ++ +
Sbjct: 84 FHLDHCAALPYLLEKTNCNPNARVFMTHPTKAIYKTLLSDFVRV---SSNEDVLYSEQDL 140
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
+ MK++ +D Q + + ++ AY AGHVLGAAMF ++ ++YTGD++ DRH
Sbjct: 141 SRTMKRIETLDYHQEMNWN-GIRFWAYNAGHVLGAAMFLVEIAGVRVLYTGDFSRQEDRH 199
Query: 186 LGAA 189
L A
Sbjct: 200 LKEA 203
>gi|401428833|ref|XP_003878899.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322495148|emb|CBZ30452.1| cleavage and polyadenylation specificity factor,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 756
Score = 139 bits (349), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 113/200 (56%), Gaps = 9/200 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ L +G+G EVG+SCVVV G+ +M DCG H A + P F I CD ID
Sbjct: 26 VEVLPIGSGGEVGRSCVVVRYKGRGVMLDCGNHPAKSGLDSLPFFDSIK--CD---EIDV 80
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++ITHFHLDH GALP+F + G I+MT T+A +++ D+ ++ G + TS
Sbjct: 81 VLITHFHLDHCGALPYFCNQTSFKGRIFMTSATKAFYKMVMNDFLRIGA---GASDLVTS 137
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + + ++ V+ + V V+ + + + AGHVLGAAMF + +YTGD++ P
Sbjct: 138 EWLQSTIDRIETVEYHEEVTVN-GISFQPFNAGHVLGAAMFMVDIAGMRALYTGDFSRVP 196
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A + D+LI E
Sbjct: 197 DRHLLGAEVPPYSPDILIAE 216
>gi|198421242|ref|XP_002128016.1| PREDICTED: similar to Cleavage and polyadenylation specificity
factor subunit 3 (Cleavage and polyadenylation
specificity factor 73 kDa subunit) (CPSF 73 kDa subunit)
(mRNA 3-end-processing endonuclease CPSF-73) [Ciona
intestinalis]
Length = 690
Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 76/197 (38%), Positives = 116/197 (58%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP--DFSRISKSCDFNNAIDCIVI 65
LGAGQEVG+SC ++ K+IM DCG+H + P DF+ K ID +++
Sbjct: 22 LGAGQEVGRSCHLLEFKEKKIMLDCGIHPGISGLAGLPYIDFTEPEK-------IDLLLV 74
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
THFHLDH G LP+F + + G ++MT+ T+A+ +L DY KV + E + +T +
Sbjct: 75 THFHLDHAGGLPWFLQKTTFKGRVFMTHATKAIYRWLLSDYIKV-SNISTEDQLYTEADL 133
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
+ M ++ ++ + V ++ Y+AGHVLGAAMF ++ ++YTGDY+ DRH
Sbjct: 134 EDSMARIETINFHEEKMVG-GIKFWCYHAGHVLGAAMFMIQIAGVRVLYTGDYSREEDRH 192
Query: 186 LGAARIDRLQLDLLITE 202
L AA I ++ D+LITE
Sbjct: 193 LMAAEIPAVRPDVLITE 209
>gi|123439147|ref|XP_001310348.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
gi|121892114|gb|EAX97418.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
Length = 679
Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 121/208 (58%), Gaps = 16/208 (7%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
+ + LGAGQEVG+SC+++ + KR+M DCG+H AY + P I + ID
Sbjct: 11 LTVMPLGAGQEVGRSCIILKYHRKRVMLDCGIHPAYENFGGLPFIDAIDPA-----KIDV 65
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--F 120
++ITHFH+DHI A+P+F ++GP +MT+ T+ ++ +L DY V V RG E F
Sbjct: 66 LLITHFHIDHITAVPWFLTQTNFSGPCFMTHTTKTISKTLLVDY--VGVSGRGSEEPNLF 123
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T +A + AV+ QTV + +++ Y AGHVLGA M+ ++ ++YTGD+++
Sbjct: 124 TRADVANVQNMITAVNYHQTV-THQGIKMTCYPAGHVLGACMWLVEIDGVKVLYTGDFSL 182
Query: 181 TPDRHLGAARIDR------LQLDLLITE 202
+RHL A I + ++ D+LI E
Sbjct: 183 ENERHLQGAEIPKSLSGEIIRPDVLIME 210
>gi|332019331|gb|EGI59837.1| Cleavage and polyadenylation specificity factor subunit 3
[Acromyrmex echinatior]
Length = 685
Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 77/198 (38%), Positives = 114/198 (57%), Gaps = 13/198 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P + + ID ++I+H
Sbjct: 24 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLVEA-----DEIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + G +MT+ T+A+ +L DY KV + E +T +
Sbjct: 79 FHLDHCGALPWFLLKTSFKGRCFMTHATKAIYRWLLSDYIKV-SNIATEQMLYTESDLET 137
Query: 128 CMKKVIAVDLKQTVQVDKDL---QIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
M K+ ++ + +KD+ + AY AGHVLGAAMF ++ ++YTGD++ DR
Sbjct: 138 SMDKIETINFHE----EKDMFGIKFWAYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDR 193
Query: 185 HLGAARIDRLQLDLLITE 202
HL AA I + D+LITE
Sbjct: 194 HLMAAEIPNIHPDVLITE 211
>gi|388579831|gb|EIM20151.1| Metallo-hydrolase/oxidoreductase [Wallemia sebi CBS 633.66]
Length = 626
Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/199 (37%), Positives = 109/199 (54%), Gaps = 9/199 (4%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC ++ GKRI+ D G+H AY P + S +D ++IT
Sbjct: 35 LLGAGQEVGRSCCLIEYKGKRIVCDAGVHPAYTGLAALPFIDELDWST-----VDALLIT 89
Query: 67 HFHLDHIGALPFFTEICGYN---GPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
HFHLDH AL + E + G +YMT PT+A+ M++D+ ++ E + FT
Sbjct: 90 HFHLDHAAALTYIMEKTNFKEGKGKVYMTSPTKAVYRFMMQDFVRISTTS-AEDQLFTES 148
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
+ + + D Q + ++ Y AGHVLGAAMF ++ ++YTGDY+ D
Sbjct: 149 EMIASWRSIQVSDFNQEIVPASGVRFTPYPAGHVLGAAMFLIEIAGLKVLYTGDYSREED 208
Query: 184 RHLGAARIDRLQLDLLITE 202
RHL AA I + Q D+LI E
Sbjct: 209 RHLHAAEIPKEQTDVLIVE 227
>gi|157876175|ref|XP_001686447.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
gi|68129521|emb|CAJ08064.1| putative cleavage and polyadenylation specificity factor
[Leishmania major strain Friedlin]
Length = 756
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 113/200 (56%), Gaps = 9/200 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ L +G+G EVG+SCVVV G+ +M DCG H A + P F I CD ID
Sbjct: 26 VEVLPIGSGGEVGRSCVVVQYKGRGVMLDCGNHPAKSGLDSLPFFDSIK--CD---EIDV 80
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++ITHFHLDH GALP+F + G ++MT T+A +++ D+ ++ G + TS
Sbjct: 81 VLITHFHLDHCGALPYFCNQTSFKGRVFMTSATKAFYKMVMNDFLRIGA---GASDLVTS 137
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + + ++ V+ + V V+ + + + AGHVLGAAMF + +YTGD++ P
Sbjct: 138 EWLQSTIDRIETVEYHEEVTVN-GISFQPFNAGHVLGAAMFMVDIAGMRALYTGDFSRVP 196
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A + D+LI E
Sbjct: 197 DRHLLGAEVPPYSPDILIAE 216
>gi|366992944|ref|XP_003676237.1| hypothetical protein NCAS_0D02950 [Naumovozyma castellii CBS 4309]
gi|342302103|emb|CCC69876.1| hypothetical protein NCAS_0D02950 [Naumovozyma castellii CBS 4309]
Length = 771
Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats.
Identities = 74/200 (37%), Positives = 113/200 (56%), Gaps = 11/200 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ GK IM D G+H AY P + S ID ++I+H
Sbjct: 14 LGGSNEVGRSCHILQYKGKTIMLDAGVHPAYQGMASLPFYDEFDLS-----TIDVLLISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV----LVDRRGEVEQ-FTS 122
FHLDH +LP+ + + G ++MT+PT+A+ +L D+ +V + G + +T
Sbjct: 69 FHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGVNSTIGNDDNIYTD 128
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ +AE K+ VD TV VD ++ A++AGHVLGAAMF ++ +++TGDY+
Sbjct: 129 EDLAESFDKIETVDYHSTVDVD-GIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREM 187
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL +A + L D+LI E
Sbjct: 188 DRHLNSAEVPSLPSDVLIVE 207
>gi|407851025|gb|EKG05159.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 762
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 115/200 (57%), Gaps = 9/200 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ L +G+G EVG+SCV++ G+ +M DCG H A + P F I CD ID
Sbjct: 38 VEILPIGSGGEVGRSCVILRYKGRSVMLDCGNHPAKSGLDSLPFFDSIR--CD---EIDL 92
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++ITHFHLDH GALP+F E + G ++MT T+A +++ D+ +V V T+
Sbjct: 93 VLITHFHLDHCGALPYFCEQTAFKGRVFMTSATKAFYKMVMNDFLRVGASANDIV---TN 149
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + ++K+ V+ + V V+ ++ + + AGHVLGAA+F + +YTGD++ P
Sbjct: 150 EWLQSTIEKIETVEYHEEVTVN-GIRFQPFNAGHVLGAALFMVDIAGMKTLYTGDFSRVP 208
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A + D+LI E
Sbjct: 209 DRHLLGAEVPSYSPDILIAE 228
>gi|399216074|emb|CCF72762.1| unnamed protein product [Babesia microti strain RI]
Length = 725
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 117/213 (54%), Gaps = 22/213 (10%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
+VLGAG EVG+SCV++ GK++MFDCG+H A + P F IS ++ ++
Sbjct: 4 VVLGAGCEVGRSCVILEHEGKQVMFDCGLHPALSGVGALPVFEAISI-----EKVNLCLV 58
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVE------- 118
THFHLDH GA+P+ + G I MT PTR + +M DY K+ +G+ +
Sbjct: 59 THFHLDHCGAVPYLVGKTSFKGTIVMTEPTRVICRLMWADYEKMGKTLQGQTKIGEEGYA 118
Query: 119 ---------QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGD 169
F S+ + + + + +D + +++D +++ Y AGHVLGA MF ++G
Sbjct: 119 MDELITGSGLFNSEDVKKAFEMIRTIDFHEEIEID-GIKLTCYGAGHVLGACMFMVEIGG 177
Query: 170 SAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
++YTGDY+ DRH+ A I + + LLI E
Sbjct: 178 IRVLYTGDYSSEQDRHVPKAEIPPIDVHLLICE 210
>gi|50363261|gb|AAT75333.1| cleavage polyadenylation specificity factor CPSF73 [Trypanosoma
cruzi]
Length = 762
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 115/200 (57%), Gaps = 9/200 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ L +G+G EVG+SCV++ G+ +M DCG H A + P F I CD ID
Sbjct: 38 VEILPIGSGGEVGRSCVILRYKGRSVMLDCGNHPAKSGLDSLPFFDSIR--CD---EIDL 92
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++ITHFHLDH GALP+F E + G ++MT T+A +++ D+ +V V T+
Sbjct: 93 VLITHFHLDHCGALPYFCEQTAFKGRVFMTSATKAFYKMVMNDFLRVGASANDIV---TN 149
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + ++K+ V+ + V V+ ++ + + AGHVLGAA+F + +YTGD++ P
Sbjct: 150 EWLQSTIEKIETVEYHEEVTVN-GIRFQPFNAGHVLGAALFMVDIAGMKTLYTGDFSRVP 208
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A + D+LI E
Sbjct: 209 DRHLLGAEVPSYSPDILIAE 228
>gi|407411604|gb|EKF33594.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi marinkellei]
Length = 763
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 115/200 (57%), Gaps = 9/200 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ L +G+G EVG+SCV++ G+ +M DCG H A + P F I CD ID
Sbjct: 39 VEILPIGSGGEVGRSCVILRYKGRSVMLDCGNHPAKSGLDSLPFFDSIR--CD---EIDL 93
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++ITHFHLDH GALP+F E + G ++MT T+A +++ D+ +V V T+
Sbjct: 94 VLITHFHLDHCGALPYFCEQTAFKGRVFMTSATKAFYKMVMNDFLRVGASANDIV---TN 150
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + ++K+ V+ + V V+ ++ + + AGHVLGAA+F + +YTGD++ P
Sbjct: 151 EWLQSTIEKIETVEYHEEVTVN-GIRFQPFNAGHVLGAALFMVDIAGMKTLYTGDFSRVP 209
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A + D+LI E
Sbjct: 210 DRHLLGAEVPSYSPDILIAE 229
>gi|240975718|ref|XP_002402161.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
gi|215491113|gb|EEC00754.1| cleavage and polyadenylation specificity factor, putative [Ixodes
scapularis]
Length = 694
Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GKRIM DCG+H + P I + ID ++++H
Sbjct: 30 LGAGQEVGRSCIILEFKGKRIMLDCGIHPGMSGLDALPYVDLIEA-----DEIDLLLVSH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + E ++ +
Sbjct: 85 FHLDHCGALPWFLQKTTFKGRCFMTHATKAIYRWLLADYIKV-SNIGTEQMLYSETDLEA 143
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + +V+ ++ Y AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 144 SMEKIETINFHEEKEVN-GIRFWCYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLM 202
Query: 188 AARIDRLQLDLLITE 202
AA I + D+LI E
Sbjct: 203 AAEIPNIHPDVLIIE 217
>gi|312372474|gb|EFR20427.1| hypothetical protein AND_20124 [Anopheles darlingi]
Length = 692
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + ID + I+H
Sbjct: 27 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLIDA-----DQIDLLFISH 81
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ ML DY KV + + +T +
Sbjct: 82 FHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWMLSDYIKV-SNISTDQMLYTEADLEA 140
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + + ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 141 SMEKIETINFHEERDI-LGVRFWAYNAGHVLGAAMFMIEIAGIRVLYTGDFSRQEDRHLM 199
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LITE
Sbjct: 200 AAEIPAMRPDVLITE 214
>gi|195343244|ref|XP_002038208.1| GM18692 [Drosophila sechellia]
gi|194133058|gb|EDW54626.1| GM18692 [Drosophila sechellia]
Length = 684
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + ID + I+H
Sbjct: 23 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEA-----DEIDLLFISH 77
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + G +MT+ T+A+ ML DY K+ + E +T +
Sbjct: 78 FHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKI-SNISTEQMLYTEADLEA 136
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 137 SMEKIETINFHEERDV-MGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLM 195
Query: 188 AARIDRLQLDLLITE 202
AA + ++ D+LITE
Sbjct: 196 AAEVPPMKPDVLITE 210
>gi|24648013|ref|NP_650738.1| cleavage and polyadenylation specificity factor 73 [Drosophila
melanogaster]
gi|21430620|gb|AAM50988.1| RE31408p [Drosophila melanogaster]
gi|23171662|gb|AAF55578.2| cleavage and polyadenylation specificity factor 73 [Drosophila
melanogaster]
gi|220948314|gb|ACL86700.1| CG7698-PA [synthetic construct]
Length = 684
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + ID + I+H
Sbjct: 23 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEA-----DEIDLLFISH 77
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + G +MT+ T+A+ ML DY K+ + E +T +
Sbjct: 78 FHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKI-SNISTEQMLYTEADLEA 136
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 137 SMEKIETINFHEERDV-MGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLM 195
Query: 188 AARIDRLQLDLLITE 202
AA + ++ D+LITE
Sbjct: 196 AAEVPPMKPDVLITE 210
>gi|347965534|ref|XP_321933.5| AGAP001224-PA [Anopheles gambiae str. PEST]
gi|333470467|gb|EAA01794.5| AGAP001224-PA [Anopheles gambiae str. PEST]
Length = 690
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + ID + I+H
Sbjct: 25 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLIDA-----DQIDLLFISH 79
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ ML DY KV + + +T +
Sbjct: 80 FHLDHCGALPWFLQKTSFKGRCFMTHATKAIYRWMLSDYIKV-SNISTDQMLYTEADLEA 138
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + + ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 139 SMEKIETINFHEERDI-LGVRFWAYNAGHVLGAAMFMIEIAGIRVLYTGDFSRQEDRHLM 197
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LITE
Sbjct: 198 AAEIPAMRPDVLITE 212
>gi|444315239|ref|XP_004178277.1| hypothetical protein TBLA_0A09750 [Tetrapisispora blattae CBS 6284]
gi|387511316|emb|CCH58758.1| hypothetical protein TBLA_0A09750 [Tetrapisispora blattae CBS 6284]
Length = 781
Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats.
Identities = 73/202 (36%), Positives = 114/202 (56%), Gaps = 12/202 (5%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
LG EVG+SC ++ GK +M D G+H AY P + DF+ + ID ++
Sbjct: 22 FALGGANEVGRSCHIIQYKGKTVMLDAGIHPAYQGLASLPFYD------DFDLSTIDVLL 75
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLV---DRRGEVEQFT 121
I+HFHLDH +LP+ + + G ++MT+PT+A+ +L D+ KV D + E
Sbjct: 76 ISHFHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLRDFVKVTSIGGDAENKDENLY 135
Query: 122 SDH-IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+D + E ++ +D T+ V+ ++ AY+AGHVLGAAMF ++ +++TGDY+
Sbjct: 136 NDEDLVESFDRIETIDYHSTIDVN-GIKFTAYHAGHVLGAAMFQIEIAGLRILFTGDYSR 194
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL +A I L D+LI E
Sbjct: 195 ELDRHLNSAEIPPLASDILIVE 216
>gi|195497711|ref|XP_002096215.1| GE25184 [Drosophila yakuba]
gi|194182316|gb|EDW95927.1| GE25184 [Drosophila yakuba]
Length = 684
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + ID + I+H
Sbjct: 23 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEA-----DEIDLLFISH 77
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + G +MT+ T+A+ ML DY K+ + E +T +
Sbjct: 78 FHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKI-SNISTEQMLYTEADLEA 136
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 137 SMEKIETINFHEERDV-MGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLM 195
Query: 188 AARIDRLQLDLLITE 202
AA + ++ D+LITE
Sbjct: 196 AAEVPPMKPDVLITE 210
>gi|195569857|ref|XP_002102925.1| GD20157 [Drosophila simulans]
gi|194198852|gb|EDX12428.1| GD20157 [Drosophila simulans]
Length = 684
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + ID + I+H
Sbjct: 23 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEA-----DEIDLLFISH 77
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + G +MT+ T+A+ ML DY K+ + E +T +
Sbjct: 78 FHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKI-SNISTEQMLYTEADLEA 136
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 137 SMEKIETINFHEERDV-MGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLM 195
Query: 188 AARIDRLQLDLLITE 202
AA + ++ D+LITE
Sbjct: 196 AAEVPPMKPDVLITE 210
>gi|344280152|ref|XP_003411849.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Loxodonta africana]
Length = 903
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 113/194 (58%), Gaps = 7/194 (3%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+HF
Sbjct: 237 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISHF 291
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + +
Sbjct: 292 HLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEDS 350
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL A
Sbjct: 351 MDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMA 409
Query: 189 ARIDRLQLDLLITE 202
A I ++ D+LI E
Sbjct: 410 AEIPNIKPDILIIE 423
>gi|194900154|ref|XP_001979622.1| GG16362 [Drosophila erecta]
gi|190651325|gb|EDV48580.1| GG16362 [Drosophila erecta]
Length = 684
Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + ID + I+H
Sbjct: 23 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEA-----DEIDLLFISH 77
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + G +MT+ T+A+ ML DY K+ + E +T +
Sbjct: 78 FHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKI-SNISTEQMLYTEADLEA 136
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 137 SMEKIETINFHEERDV-MGVRFCAYIAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLM 195
Query: 188 AARIDRLQLDLLITE 202
AA + ++ D+LITE
Sbjct: 196 AAEVPPMKPDVLITE 210
>gi|72387720|ref|XP_844284.1| cleavage and polyadenylation specificity factor subunit
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62359436|gb|AAX79873.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei]
gi|70800817|gb|AAZ10725.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 770
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 114/200 (57%), Gaps = 9/200 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ L +G+G EVG+SCVVV G+ +M DCG H A + P F I CD ID
Sbjct: 39 VEILPIGSGGEVGRSCVVVRYKGRSVMLDCGNHPAKSGLDSLPFFDSIR--CD---EIDL 93
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++ITHFHLDH GALP+F E + G I+MT T+A +++ D+ ++ V +
Sbjct: 94 VLITHFHLDHCGALPYFCEQTSFRGRIFMTSATKAFYKMVMNDFLRIGASAEDIV---NN 150
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + ++K+ V+ + V V+ + + + AGHVLGAA+F + ++YTGD++ P
Sbjct: 151 EWLQSTIEKIETVEYHEEVTVN-GIHFQPFNAGHVLGAALFMVDIAGMKLLYTGDFSRVP 209
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A + D+LI E
Sbjct: 210 DRHLLGAEVPPYSPDILIAE 229
>gi|261327437|emb|CBH10412.1| cleavage and polyadenylation specificity factor subunit, putative
[Trypanosoma brucei gambiense DAL972]
Length = 770
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 114/200 (57%), Gaps = 9/200 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ L +G+G EVG+SCVVV G+ +M DCG H A + P F I CD ID
Sbjct: 39 VEILPIGSGGEVGRSCVVVRYKGRSVMLDCGNHPAKSGLDSLPFFDSIR--CD---EIDL 93
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++ITHFHLDH GALP+F E + G I+MT T+A +++ D+ ++ V +
Sbjct: 94 VLITHFHLDHCGALPYFCEQTSFRGRIFMTSATKAFYKMVMNDFLRIGASAEDIV---NN 150
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + ++K+ V+ + V V+ + + + AGHVLGAA+F + ++YTGD++ P
Sbjct: 151 EWLQSTIEKIETVEYHEEVTVN-GIHFQPFNAGHVLGAALFMVDIAGMKLLYTGDFSRVP 209
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A + D+LI E
Sbjct: 210 DRHLLGAEVPPYSPDILIAE 229
>gi|198451826|ref|XP_001358526.2| GA20526 [Drosophila pseudoobscura pseudoobscura]
gi|198131664|gb|EAL27667.2| GA20526 [Drosophila pseudoobscura pseudoobscura]
Length = 684
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + ID + I+H
Sbjct: 23 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEA-----DEIDLLFISH 77
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + G +MT+ T+A+ ML DY K+ + E +T +
Sbjct: 78 FHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKI-SNISTEQMLYTEADLEA 136
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 137 SMEKIETINFHEERDV-MGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLM 195
Query: 188 AARIDRLQLDLLITE 202
AA + ++ D+LITE
Sbjct: 196 AAEVPPMKPDVLITE 210
>gi|195145744|ref|XP_002013850.1| GL23169 [Drosophila persimilis]
gi|194102793|gb|EDW24836.1| GL23169 [Drosophila persimilis]
Length = 684
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + ID + I+H
Sbjct: 23 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEA-----DEIDLLFISH 77
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + G +MT+ T+A+ ML DY K+ + E +T +
Sbjct: 78 FHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKI-SNISTEQMLYTEADLEA 136
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 137 SMEKIETINFHEERDV-MGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLM 195
Query: 188 AARIDRLQLDLLITE 202
AA + ++ D+LITE
Sbjct: 196 AAEVPPMKPDVLITE 210
>gi|71654879|ref|XP_816051.1| cleavage and polyadenylation specificity factor [Trypanosoma cruzi
strain CL Brener]
gi|70881152|gb|EAN94200.1| cleavage and polyadenylation specificity factor, putative
[Trypanosoma cruzi]
Length = 430
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 115/200 (57%), Gaps = 9/200 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ L +G+G EVG+SCV++ G+ +M DCG H A + P F I CD ID
Sbjct: 38 VEILPIGSGGEVGRSCVILRYKGRSVMLDCGNHPAKSGLDSLPFFDSIR--CD---EIDL 92
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++ITHFHLDH GALP+F E + G ++MT T+A +++ D+ +V V T+
Sbjct: 93 VLITHFHLDHCGALPYFCEQTAFKGRVFMTSATKAFYKMVMNDFLRVGASANDIV---TN 149
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + ++K+ V+ + V V+ ++ + + AGHVLGAA+F + +YTGD++ P
Sbjct: 150 EWLQSTIEKIETVEYHEEVTVN-GIRFQPFNAGHVLGAALFMVDIAGMKTLYTGDFSRVP 208
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A + D+LI E
Sbjct: 209 DRHLLGAEVPSYSPDILIAE 228
>gi|260815130|ref|XP_002602327.1| hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae]
gi|229287635|gb|EEN58339.1| hypothetical protein BRAFLDRAFT_282200 [Branchiostoma floridae]
Length = 687
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 110/195 (56%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC ++ GK+IM D G+H N P I ID ++I+H
Sbjct: 24 LGAGQEVGRSCHMLEFKGKKIMLDTGIHPGLNGLNALPFLDLIDP-----EEIDLLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH G LP+F + G ++MT+ T+A+ +L DY KV + E +T + ++
Sbjct: 79 FHLDHCGGLPYFLTKTSFRGRVFMTHATKAIYKWLLSDYIKV-SNISSEDMLYTENDLSA 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ V+ Q V+ ++ Y AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 138 SMDKIETVNFHQETDVN-GIKFWCYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLITE 202
AA + + D+LI E
Sbjct: 197 AAEVPAIHPDVLIIE 211
>gi|355565449|gb|EHH21878.1| hypothetical protein EGK_05038 [Macaca mulatta]
Length = 650
Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 115/197 (58%), Gaps = 8/197 (4%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
L+ GAGQEVG+SC+++ G++IM DCG+H P I + ID ++I
Sbjct: 13 LIRGAGQEVGRSCIILEFKGRKIM-DCGIHPGLEGMDALPYIDLIDPA-----EIDLLLI 66
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
+HFHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T +
Sbjct: 67 SHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDL 125
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
E M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRH
Sbjct: 126 EESMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRH 184
Query: 186 LGAARIDRLQLDLLITE 202
L AA I ++ D+LI E
Sbjct: 185 LMAAEIPNIKPDILIIE 201
>gi|294945156|ref|XP_002784572.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239897691|gb|EER16368.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 213
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 104/175 (59%), Gaps = 5/175 (2%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SCV++ G+ +MFDCG+H A+ P F +S + D N +D +++TH
Sbjct: 30 LGAGQEVGRSCVILKFRGRTVMFDCGIHPAHTGMTALPFFDHLS-TADLTN-VDLLLVTH 87
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GA+P+ + G YMT+PTR + ++ +DY +V E + + I +
Sbjct: 88 FHLDHSGAVPYLIGRTDFKGRTYMTHPTRPICRLLWQDYARVSKITAAEDQVYGRTDIDK 147
Query: 128 CMKKVIAVDLKQTVQVDK---DLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
CM+++ QTV + + AY AGHVLGAAMF ++ ++YTGD++
Sbjct: 148 CMQRIDTCTFHQTVTISTPAGPISFTAYRAGHVLGAAMFVVEIDGVRLLYTGDFS 202
>gi|194743214|ref|XP_001954095.1| GF18101 [Drosophila ananassae]
gi|190627132|gb|EDV42656.1| GF18101 [Drosophila ananassae]
Length = 684
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + ID + I+H
Sbjct: 23 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEA-----DEIDLLFISH 77
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + G +MT+ T+A+ ML DY K+ + E +T +
Sbjct: 78 FHLDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDYIKI-SNISTEQMLYTDADLEA 136
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 137 SMEKIETINFHEERDV-MGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLM 195
Query: 188 AARIDRLQLDLLITE 202
AA + ++ D+LITE
Sbjct: 196 AAEVPPMKPDVLITE 210
>gi|449283675|gb|EMC90280.1| Cleavage and polyadenylation specificity factor subunit 3, partial
[Columba livia]
Length = 667
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 112/194 (57%), Gaps = 7/194 (3%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
GAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+HF
Sbjct: 1 GAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISHF 55
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP+F + + G +MT+ T+A+ +L D KV + + +T + E
Sbjct: 56 HLDHCGALPWFLQKTSFKGRTFMTHATKAIYKWLLSDCVKV-SNISADDMLYTETDLEES 114
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL A
Sbjct: 115 MDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMA 173
Query: 189 ARIDRLQLDLLITE 202
A I ++ D+LI E
Sbjct: 174 AEIPNIKPDILIIE 187
>gi|154336691|ref|XP_001564581.1| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|134061616|emb|CAM38647.1| putative cleavage and polyadenylation specificity factor
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 756
Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 113/200 (56%), Gaps = 9/200 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ L +G+G EVG+SCVVV G+ +M DCG H A + P F I CD ID
Sbjct: 26 VEVLPIGSGGEVGRSCVVVHYKGRGVMLDCGNHPAKSGLDSLPFFDSIK--CD---EIDV 80
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++ITHFHLDH GALP+F + G ++MT T+A +++ D+ ++ G + TS
Sbjct: 81 VLITHFHLDHCGALPYFCNQTSFKGRVFMTSATKAFYKMVMNDFLRI---GAGASDLVTS 137
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + + ++ ++ + V V+ + + + AGHVLGAAMF + +YTGD++ P
Sbjct: 138 EWLQSTIDRIETIEYHEEVTVN-GISFQPFNAGHVLGAAMFMVDIAGMRALYTGDFSRVP 196
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A + D+LI E
Sbjct: 197 DRHLLGAEVPPYSPDILIAE 216
>gi|357618299|gb|EHJ71335.1| hypothetical protein KGM_14386 [Danaus plexippus]
Length = 324
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + +D ++I+H
Sbjct: 25 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPFVDLIEA-----DEVDLLLISH 79
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + G ++MT+ T+A+ ++ DY KV + E +T +
Sbjct: 80 FHLDHSGALPWFLTKTSFKGRVFMTHATKAIYRWLVSDYIKV-SNISTEQMLYTESDLEG 138
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M ++ ++ + V + ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 139 SMDRIETINFHEEKDV-RGVRFWAYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLM 197
Query: 188 AARIDRLQLDLLITE 202
AA I + D+LIT+
Sbjct: 198 AAEIPTVHPDVLITK 212
>gi|195995883|ref|XP_002107810.1| hypothetical protein TRIADDRAFT_19764 [Trichoplax adhaerens]
gi|190588586|gb|EDV28608.1| hypothetical protein TRIADDRAFT_19764 [Trichoplax adhaerens]
Length = 636
Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC ++ K IM DCG+H + P I++ + ID ++I+H
Sbjct: 28 LGAGQEVGRSCHIIQYKNKTIMLDCGIHPGRHGVEALPYTDIIAE-----DQIDLLLISH 82
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F E + G ++MT+ T+A+ +L DY KV + + +T + +
Sbjct: 83 FHLDHCGALPWFLERTSFKGRVFMTHATKAIYRWLLADYVKV-SNISTDQMLYTEKDLEK 141
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ + Q +V+ ++ Y AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 142 SMTKIETIHFHQEKEVN-GIKFWCYNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLM 200
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 201 AAEIPSVKPDVLIIE 215
>gi|156379813|ref|XP_001631650.1| predicted protein [Nematostella vectensis]
gi|156218694|gb|EDO39587.1| predicted protein [Nematostella vectensis]
Length = 688
Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 110/195 (56%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG+GQEVG+SC ++ GK++M DCG+H P I + ID ++++H
Sbjct: 26 LGSGQEVGRSCHILEFKGKKVMLDCGIHPGMTGVESLPFLDEIDTA-----EIDLLLVSH 80
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH G+LP+ E + G ++MT+ T+A+ +L DY KV + E FT + +
Sbjct: 81 FHLDHCGSLPWLLEKTTFKGRVFMTHATKAIYRWLLSDYVKV-SNIAAEDMLFTESDLEK 139
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ + Q +V ++ Y+AGHVLGA MF ++ ++YTGD++ DRHL
Sbjct: 140 SMDKIETLHFHQEKEVG-GIKFWCYHAGHVLGACMFMLEIAGVKILYTGDFSRQEDRHLM 198
Query: 188 AARIDRLQLDLLITE 202
AA I + D+LI E
Sbjct: 199 AAEIPSISPDVLIIE 213
>gi|449546825|gb|EMD37794.1| hypothetical protein CERSUDRAFT_154677 [Ceriporiopsis subvermispora
B]
Length = 820
Score = 137 bits (344), Expect = 4e-30, Method: Composition-based stats.
Identities = 74/199 (37%), Positives = 109/199 (54%), Gaps = 10/199 (5%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC V+ GK I+ D G+H AYN P + S +D ++IT
Sbjct: 11 LLGAGQEVGRSCCVIQYRGKTIVCDAGVHPAYNGIASLPFIDELDWS-----TVDVLLIT 65
Query: 67 HFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
HFHLDH AL + TE + G +YMT+PT+AL M++D+ ++ + F+
Sbjct: 66 HFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKALHKFMMQDFVRMSSSTSDAL--FSPL 123
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
++ M +I V Q + + Y+AGHVLGA MF + ++YTGDY+ D
Sbjct: 124 DLSMSMSAIIPVSAHQVITPCPGVSFTPYHAGHVLGACMFLIDIAGLKILYTGDYSREED 183
Query: 184 RHLGAARIDRLQLDLLITE 202
RHL A + ++ D+LI E
Sbjct: 184 RHLVKAEVPPIRPDVLIVE 202
>gi|367016955|ref|XP_003682976.1| hypothetical protein TDEL_0G03980 [Torulaspora delbrueckii]
gi|359750639|emb|CCE93765.1| hypothetical protein TDEL_0G03980 [Torulaspora delbrueckii]
Length = 775
Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 117/205 (57%), Gaps = 10/205 (4%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
++ LG G EVG+SC ++ GK IM D G+H A+ + P + S ID
Sbjct: 8 SLKFFALGGGNEVGRSCHILQFKGKTIMLDAGVHPAHQGYSSLPFYDEFDLS-----KID 62
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVL---VDRRGEVE 118
++I+HFH+DH +LP+ + + G ++MT+PT+A+ +L D+ +V V G+ +
Sbjct: 63 VLLISHFHVDHAASLPYVMQKTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGVSSGGKDD 122
Query: 119 Q-FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
+T + +AE ++ +D TV V+ ++ AY+AGHVLGAAMF ++ +++TGD
Sbjct: 123 NLYTDEDLAESFDRIETIDFHSTVDVNG-IKFTAYHAGHVLGAAMFQIEIAGVRILFTGD 181
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
Y+ DRHL +A + L D+ I E
Sbjct: 182 YSRELDRHLNSAEVPTLPSDVHIVE 206
>gi|390365684|ref|XP_003730872.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Strongylocentrotus purpuratus]
Length = 216
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/194 (37%), Positives = 111/194 (57%), Gaps = 7/194 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H P F I ID ++++H
Sbjct: 24 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGREGMDSLPYFDLIDP-----EEIDLLLVSH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH G LP+F + + G ++MT+ ++A+ L DY KV + E +T +
Sbjct: 79 FHLDHCGGLPYFLKNTQFRGRVFMTHASKAIYRWNLSDYVKV-SNLSAERMLYTDADLQA 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M ++ V+ Q V ++ ++ Y+AGHVLGA MF ++ ++YTGD++ DRHL
Sbjct: 138 SMDRIETVNFHQEVDIN-GIRFSCYHAGHVLGACMFLIEIAGVKILYTGDFSRQEDRHLM 196
Query: 188 AARIDRLQLDLLIT 201
A I ++ D+LIT
Sbjct: 197 QAEIPNVKPDILIT 210
>gi|326426580|gb|EGD72150.1| cleavage and polyadenylation specificity factor subunit 3
[Salpingoeca sp. ATCC 50818]
Length = 790
Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 110/195 (56%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC ++ G IM DCG+H P S+I N ID ++ITH
Sbjct: 56 LGAGQEVGRSCHILKFKGFTIMLDCGIHPGLKGKASLPFVSQIEL-----NKIDLVLITH 110
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+ E ++G ++MT T+A+ +LEDY +V + E ++ + +
Sbjct: 111 FHLDHCGALPWLLERSTFSGRVFMTPATKAIYRWILEDYVRV-SNISNFAEMYSLEDVEN 169
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
+ K+ + Q +D ++ Y AGHVLGA MF ++ +VYTGD++ DRHL
Sbjct: 170 SLAKIETISYHQETNMD-GVRFTPYCAGHVLGACMFDIEIAGVRLVYTGDFSREEDRHLM 228
Query: 188 AARIDRLQLDLLITE 202
AA + D+LITE
Sbjct: 229 AAEVPPNSPDILITE 243
>gi|342180524|emb|CCC90000.1| putative cleavage and polyadenylation specificity factor subunit
[Trypanosoma congolense IL3000]
Length = 766
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 114/200 (57%), Gaps = 9/200 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ L +G+G EVG+SC+VV G+ +M DCG H A + P F I C+ ID
Sbjct: 38 VEILPIGSGGEVGRSCIVVRYKGRSVMLDCGNHPAKSGLDSLPFFDSIR--CE---EIDV 92
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++ITHFHLDH GALP+F E + G I+MT T+A +++ D+ +V V +
Sbjct: 93 VLITHFHLDHCGALPYFCEQTAFKGRIFMTSATKAFYKMVMNDFLRVGASAEDIV---NN 149
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + ++K+ V+ + V V+ + + + AGHVLGAA+F + ++YTGD++ P
Sbjct: 150 EWLQSTIEKIETVEYHEEVTVN-GIHFQPFNAGHVLGAALFMVDIAGMKVLYTGDFSRVP 208
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A + D+LI E
Sbjct: 209 DRHLLGAEVPPYSPDILIAE 228
>gi|302309512|ref|NP_986945.2| AGR279Cp [Ashbya gossypii ATCC 10895]
gi|442570103|sp|Q74ZC0.2|YSH1_ASHGO RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|299788393|gb|AAS54769.2| AGR279Cp [Ashbya gossypii ATCC 10895]
Length = 771
Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats.
Identities = 72/201 (35%), Positives = 113/201 (56%), Gaps = 12/201 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ GK +M D G+H A+ P + S ++ ++I+H
Sbjct: 16 LGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFDLS-----QVEVLLISH 70
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLV---DRRGEVEQ---FT 121
FHLDH +LP+ + + G ++MT+PT+A+ +L D+ KV D G V +T
Sbjct: 71 FHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNDNAGGVSDENLYT 130
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+ +AE ++ VD T+ V+ ++ AY+AGHVLGAAMF ++ +++TGDY+
Sbjct: 131 DEDLAESFDRIETVDYHSTIDVN-GIKFTAYHAGHVLGAAMFQVEIAGLRILFTGDYSRE 189
Query: 182 PDRHLGAARIDRLQLDLLITE 202
DRHL +A I L D+LI E
Sbjct: 190 LDRHLNSAEIPTLPSDILIVE 210
>gi|268552491|ref|XP_002634228.1| Hypothetical protein CBG01798 [Caenorhabditis briggsae]
Length = 722
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/206 (36%), Positives = 119/206 (57%), Gaps = 15/206 (7%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYN--DHRQYPDFSRISKSCDFNNA 59
A+ LG+GQEVG+SC ++ GKR+M DCG+H + D + DF I
Sbjct: 10 ALSFTPLGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIEN------- 62
Query: 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
ID ++ITHFHLDH GALP+ + + G +MT+ T+A+ ++L DY V + + G ++
Sbjct: 63 IDLLLITHFHLDHCGALPWLLQKTAFRGKCFMTHATKAIYRMLLGDY--VRISKYGGADR 120
Query: 120 ---FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
+T D + + M K+ +D ++ +V+ ++ Y AGHVLGA F ++ ++YTG
Sbjct: 121 NQLYTEDDLEKSMAKIETIDFREQKEVN-GIRFWPYVAGHVLGACQFMIEIAGVRVLYTG 179
Query: 177 DYNMTPDRHLGAARIDRLQLDLLITE 202
D++ DRHL AA I + +LITE
Sbjct: 180 DFSCLEDRHLCAAEIPPVSPQVLITE 205
>gi|384499309|gb|EIE89800.1| hypothetical protein RO3G_14511 [Rhizopus delemar RA 99-880]
Length = 654
Score = 136 bits (342), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/196 (37%), Positives = 116/196 (59%), Gaps = 13/196 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG+G EVG+S +++ GK I+ D G+H AYN P F + + +ID +++TH
Sbjct: 12 LGSGNEVGRSSILMEYKGKTILLDAGIHPAYNGLASLPFFDEMDPA-----SIDVLLVTH 66
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-FTSDHIA 126
FH+DH ++P+ G ++MT+PT+A+ +L DY +V GE +Q +T + +
Sbjct: 67 FHVDHAASVPYLMG----KGRVFMTHPTKAIFKWLLSDYLRV--SHIGEEDQLYTEEDLL 120
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
++ A+D Q V+V+ ++ AY AGHVLGAAMF ++ ++YTGDY+ DRHL
Sbjct: 121 NSFHRIEAIDYHQQVEVE-GIKFTAYNAGHVLGAAMFLIEIAGVKVLYTGDYSREEDRHL 179
Query: 187 GAARIDRLQLDLLITE 202
AA +D+LITE
Sbjct: 180 MAAEKPEGSVDVLITE 195
>gi|374110195|gb|AEY99100.1| FAGR279Cp [Ashbya gossypii FDAG1]
Length = 771
Score = 136 bits (342), Expect = 5e-30, Method: Composition-based stats.
Identities = 72/201 (35%), Positives = 113/201 (56%), Gaps = 12/201 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ GK +M D G+H A+ P + S ++ ++I+H
Sbjct: 16 LGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFDLS-----QVEVLLISH 70
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLV---DRRGEVEQ---FT 121
FHLDH +LP+ + + G ++MT+PT+A+ +L D+ KV D G V +T
Sbjct: 71 FHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNDSAGGVSDENLYT 130
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+ +AE ++ VD T+ V+ ++ AY+AGHVLGAAMF ++ +++TGDY+
Sbjct: 131 DEDLAESFDRIETVDYHSTIDVN-GIKFTAYHAGHVLGAAMFQVEIAGLRILFTGDYSRE 189
Query: 182 PDRHLGAARIDRLQLDLLITE 202
DRHL +A I L D+LI E
Sbjct: 190 LDRHLNSAEIPTLPSDILIVE 210
>gi|427779921|gb|JAA55412.1| Putative cleavage and polyadenylation specificity factor cpsf
subunit [Rhipicephalus pulchellus]
Length = 737
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GKRIM DCG+H + P I + ID ++++H
Sbjct: 73 LGAGQEVGRSCIMLEFKGKRIMLDCGIHPGMSGLDALPYVDLIEA-----DEIDLLLVSH 127
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + E ++ +
Sbjct: 128 FHLDHCGALPWFLQKTTFKGRCFMTHATKAIYRWLLADYIKV-SNIGTEQMLYSEADLES 186
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V+ ++ Y AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 187 SMEKIETINFHEEKDVN-GIRFWCYNAGHVLGAAMFMIEIAGVKVLYTGDFSRQEDRHLM 245
Query: 188 AARIDRLQLDLLITE 202
AA I + D+LI E
Sbjct: 246 AAEIPNIHPDVLIIE 260
>gi|195395198|ref|XP_002056223.1| GJ10819 [Drosophila virilis]
gi|194142932|gb|EDW59335.1| GJ10819 [Drosophila virilis]
Length = 686
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 112/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + ID + I+H
Sbjct: 25 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEA-----DEIDLLFISH 79
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + G +MT+ T+A+ ML DY K+ + E +T +
Sbjct: 80 FHLDHCGALPWFLMKTSFRGRCFMTHATKAIYRWMLSDYIKI-SNISTEQMLYTEADLEA 138
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 139 SMEKIETINFHEERDV-MGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLM 197
Query: 188 AARIDRLQLDLLITE 202
AA + + D+LITE
Sbjct: 198 AAEVPPKKPDVLITE 212
>gi|195108751|ref|XP_001998956.1| GI24246 [Drosophila mojavensis]
gi|193915550|gb|EDW14417.1| GI24246 [Drosophila mojavensis]
Length = 686
Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 76/195 (38%), Positives = 112/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + ID + I+H
Sbjct: 25 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEA-----DEIDLLFISH 79
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + G +MT+ T+A+ ML DY K+ + E +T +
Sbjct: 80 FHLDHCGALPWFLMKTSFRGRCFMTHATKAIYRWMLSDYIKI-SNISTEQMLYTEADLEA 138
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 139 SMEKIETINFHEERDV-MGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLM 197
Query: 188 AARIDRLQLDLLITE 202
AA + + D+LITE
Sbjct: 198 AAEVPPKKPDVLITE 212
>gi|238882385|gb|EEQ46023.1| hypothetical protein CAWG_04366 [Candida albicans WO-1]
Length = 783
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 68/204 (33%), Positives = 118/204 (57%), Gaps = 15/204 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM D GMH A + H +P F S +D ++I+H
Sbjct: 18 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFDEYDIS-----KVDILLISH 72
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV--LVDRRGE-------VE 118
FH+DH +LP+ + + G ++MT+ T+A+ +++D+ +V + + R E
Sbjct: 73 FHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSEDGGGGEGSN 132
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDY 178
+T D I + ++ +D T+++D ++ AY+AGHVLGA M++ ++G +++TGDY
Sbjct: 133 LYTDDDIMKSFDRIETIDYHSTMEID-GIRFTAYHAGHVLGACMYFIEIGGLKVLFTGDY 191
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
+ +RHL AA + L+ D+LI+E
Sbjct: 192 SREENRHLHAAEVPPLKPDILISE 215
>gi|68489322|ref|XP_711502.1| hypothetical protein CaO19.12941 [Candida albicans SC5314]
gi|68489371|ref|XP_711478.1| hypothetical protein CaO19.5486 [Candida albicans SC5314]
gi|74584420|sp|Q59P50.1|YSH1_CANAL RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|46432783|gb|EAK92250.1| hypothetical protein CaO19.5486 [Candida albicans SC5314]
gi|46432809|gb|EAK92275.1| hypothetical protein CaO19.12941 [Candida albicans SC5314]
Length = 870
Score = 136 bits (342), Expect = 6e-30, Method: Composition-based stats.
Identities = 68/204 (33%), Positives = 118/204 (57%), Gaps = 15/204 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM D GMH A + H +P F S +D ++I+H
Sbjct: 105 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFDEYDIS-----KVDILLISH 159
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV--LVDRRGE-------VE 118
FH+DH +LP+ + + G ++MT+ T+A+ +++D+ +V + + R E
Sbjct: 160 FHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSEDGGGGEGSN 219
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDY 178
+T D I + ++ +D T+++D ++ AY+AGHVLGA M++ ++G +++TGDY
Sbjct: 220 LYTDDDIMKSFDRIETIDYHSTMEID-GIRFTAYHAGHVLGACMYFIEIGGLKVLFTGDY 278
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
+ +RHL AA + L+ D+LI+E
Sbjct: 279 SREENRHLHAAEVPPLKPDILISE 302
>gi|156840674|ref|XP_001643716.1| hypothetical protein Kpol_1009p4 [Vanderwaltozyma polyspora DSM
70294]
gi|156114339|gb|EDO15858.1| hypothetical protein Kpol_1009p4 [Vanderwaltozyma polyspora DSM
70294]
Length = 778
Score = 135 bits (341), Expect = 7e-30, Method: Composition-based stats.
Identities = 71/201 (35%), Positives = 113/201 (56%), Gaps = 10/201 (4%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
L LG EVG+SC V+ GK +M D G+H AY P + S ID ++I
Sbjct: 12 LSLGGSNEVGRSCHVLQFKGKTVMLDTGIHPAYQGLASLPFYDEFDLS-----KIDVLLI 66
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ----FT 121
+HFHLDH +LP+ + + G ++MT+PT+A+ +L D+ +V E+ +T
Sbjct: 67 SHFHLDHAASLPYVMKRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGTTSSEKDENLYT 126
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+ +A+ K+ +D T+ V+ ++ A++AGHVLGAAMF ++ +++TGDY+
Sbjct: 127 DEDLADSFDKIETIDYHSTMDVN-GIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSRE 185
Query: 182 PDRHLGAARIDRLQLDLLITE 202
DRHL +A + L D+LI E
Sbjct: 186 MDRHLNSAEVPPLPSDVLIVE 206
>gi|300121617|emb|CBK22135.2| unnamed protein product [Blastocystis hominis]
Length = 545
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 121/207 (58%), Gaps = 6/207 (2%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
M I VLG GQ +GKSC ++++ + ++ DCG + + + PDFS++ KS N+ I
Sbjct: 1 MQISLTVLGGGQSIGKSCFLLSVGDQHVLLDCGSFVGKDTKKALPDFSKLPKSMTVND-I 59
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
++I+HFH+DHIG L + TE Y G IY + PTRA+ P++L + R +L ++
Sbjct: 60 TAVLISHFHMDHIGGLLYLTEQLKYKGDIYASSPTRAVLPLLLRNNRVLLTNQAQVQSTV 119
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN- 179
T + A+ K + V + +++Q++ +L+I A+ AGHVLGA M+ + +++YTGD++
Sbjct: 120 TMETFAKLTKHIREVTVNESIQLNPNLRITAHIAGHVLGAVMWEIEAYGRSILYTGDFSD 179
Query: 180 ----MTPDRHLGAARIDRLQLDLLITE 202
P L A + LD+LI E
Sbjct: 180 EPGGFIPSYQLPARFLRPGNLDMLIME 206
>gi|308492421|ref|XP_003108401.1| CRE-CPSF-3 protein [Caenorhabditis remanei]
gi|308249249|gb|EFO93201.1| CRE-CPSF-3 protein [Caenorhabditis remanei]
Length = 712
Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 117/200 (58%), Gaps = 15/200 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYN--DHRQYPDFSRISKSCDFNNAIDCIVI 65
LG+GQEVG+SC ++ GKR+M DCG+H + D + DF I ID ++I
Sbjct: 16 LGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIEN-------IDLLLI 68
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ---FTS 122
THFHLDH GALP+ + + G +MT+ T+A+ ++L DY V + + G ++ +T
Sbjct: 69 THFHLDHCGALPWLLQKTAFRGKCFMTHATKAIYRMLLGDY--VRISKYGGADRNQLYTE 126
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
D + + M K+ +D ++ +V+ ++ Y AGHVLGA F ++ ++YTGD++
Sbjct: 127 DDLEKSMAKIETIDFREQKEVN-GIRFWPYVAGHVLGACQFMIEIAGVRVLYTGDFSCLE 185
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL AA I + +LITE
Sbjct: 186 DRHLCAAEIPPITPQVLITE 205
>gi|302832928|ref|XP_002948028.1| hypothetical protein VOLCADRAFT_79885 [Volvox carteri f.
nagariensis]
gi|300266830|gb|EFJ51016.1| hypothetical protein VOLCADRAFT_79885 [Volvox carteri f.
nagariensis]
Length = 728
Score = 135 bits (340), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 107/195 (54%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SC+++ K +MFDCG+H A+ P I + +D +ITH
Sbjct: 29 LGAGSEVGRSCIILKYQDKTVMFDCGIHPAFKGMDSLPLLDDIDIAT-----VDVALITH 83
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH A+P+ + G I+MT+PT+A+ +L D K E F + +
Sbjct: 84 FHLDHCAAVPYLLRKTRFKGRIFMTHPTKAIYYSLLRDLAKG-AKHSSEEALFNEEDLDA 142
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+++ VD QT++V +QI Y AGHVLGAAMF +V +YTGDY+ PDRHL
Sbjct: 143 SMEQIEVVDFYQTIEV-SGMQITPYRAGHVLGAAMFMVEVAGLRCLYTGDYSRLPDRHLP 201
Query: 188 AARIDRLQLDLLITE 202
A + ++I E
Sbjct: 202 GADTPPVTPHIVIVE 216
>gi|254565077|ref|XP_002489649.1| Putative endoribonuclease [Komagataella pastoris GS115]
gi|238029445|emb|CAY67368.1| Putative endoribonuclease [Komagataella pastoris GS115]
Length = 784
Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats.
Identities = 62/195 (31%), Positives = 110/195 (56%), Gaps = 6/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+S ++ GK +M D G+H A+ P + +D ++I+H
Sbjct: 21 LGGGNEVGRSSHIIQFKGKTVMLDAGVHPAFQGMASLPFYDEFDLG-----TVDVLLISH 75
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH +LP+ + + G ++MT+PT+A+ +L D+ +V + ++ + +
Sbjct: 76 FHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLNDFVRVTAIDDDSNQLYSDKDLKD 135
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
++ +D T+++D ++ AY AGHVLGAAMF+ ++ +++TGD++ DRHL
Sbjct: 136 SFDRIETIDFHSTIEID-GIRFTAYQAGHVLGAAMFFIEIAGIKVLFTGDFSREEDRHLS 194
Query: 188 AARIDRLQLDLLITE 202
A + ++ D+LITE
Sbjct: 195 VAEVPPVRPDVLITE 209
>gi|32566029|ref|NP_502553.2| Protein CPSF-3 [Caenorhabditis elegans]
gi|26985920|emb|CAC44310.2| Protein CPSF-3 [Caenorhabditis elegans]
Length = 707
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 117/200 (58%), Gaps = 15/200 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYN--DHRQYPDFSRISKSCDFNNAIDCIVI 65
LG+GQEVG+SC ++ GKR+M DCG+H + D + DF I ID ++I
Sbjct: 16 LGSGQEVGRSCHLLEYKGKRVMLDCGVHPGLHGVDALPFVDFVEIEN-------IDLLLI 68
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ---FTS 122
THFHLDH GALP+ + + G +MT+ T+A+ ++L DY V + + G ++ +T
Sbjct: 69 THFHLDHCGALPWLLQKTAFQGKCFMTHATKAIYRMLLGDY--VRISKYGGPDRNQLYTE 126
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
D + + M K+ +D ++ +V+ ++ Y AGHVLGA F ++ ++YTGD++
Sbjct: 127 DDLEKSMAKIETIDFREQKEVN-GIRFWPYVAGHVLGACQFMIEIAGVRVLYTGDFSCLE 185
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL AA I + +LITE
Sbjct: 186 DRHLCAAEIPPITPQVLITE 205
>gi|449016323|dbj|BAM79725.1| cleavage and polyadenylation specifity factor protein
[Cyanidioschyzon merolae strain 10D]
Length = 749
Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/205 (39%), Positives = 117/205 (57%), Gaps = 12/205 (5%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
+ + LGAG EVG+SC+V+ K I+FDCG+H AY+ P F I S ID
Sbjct: 9 TLSIIPLGAGSEVGRSCIVLKFKKKTILFDCGVHPAYSGLAALPFFDEIDPS-----EID 63
Query: 62 CIVITHFHLDHIGALPFFTEICGYN--GPIYMTYPTRALAPIMLEDYRKV-LVDRRGEVE 118
I+ITHFHLDH LP+ N I MT+PT+A+ ++ D+ +V D G +
Sbjct: 64 VILITHFHLDHCAGLPYLVTQTNLNPRARILMTHPTKAVYRSLIGDFVRVGSSDYAGII- 122
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDY 178
+T + + M ++ +D Q + V ++I AY AGHVLGAAMF +V +++YTGD+
Sbjct: 123 -YTESDLNQTMARIECIDYHQHIDV-SGVRISAYNAGHVLGAAMFLVEVAGVSVLYTGDF 180
Query: 179 NMTPDRHLGAARIDR-LQLDLLITE 202
+ DRHL A I R + +D+LI E
Sbjct: 181 SRQEDRHLMEAEIPRGIHIDVLICE 205
>gi|50287519|ref|XP_446189.1| hypothetical protein [Candida glabrata CBS 138]
gi|74637743|sp|Q6FUA5.1|YSH1_CANGA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|49525496|emb|CAG59113.1| unnamed protein product [Candida glabrata]
Length = 771
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 69/201 (34%), Positives = 116/201 (57%), Gaps = 13/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK IM D G+H AY P + DF+ + +D ++I+
Sbjct: 15 LGGGNEVGRSCHIIQFKGKTIMLDAGIHPAYQGMASLPFYD------DFDLSIVDVLLIS 68
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV--LVDRRGEVEQ---FT 121
HFHLDH +LP+ + + G ++MT+PT+A+ +L D+ +V + + E ++
Sbjct: 69 HFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGSQSSNAEDDNLYS 128
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
++ + E K+ +D + V+ ++ A++AGHVLGAAMF ++ +++TGDY+
Sbjct: 129 NEDLIESFDKIETIDYHSMIDVN-GIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSRE 187
Query: 182 PDRHLGAARIDRLQLDLLITE 202
DRHL +A + L D+LI E
Sbjct: 188 IDRHLNSAEVPPLPSDILIVE 208
>gi|401404496|ref|XP_003881737.1| hypothetical protein NCLIV_014990 [Neospora caninum Liverpool]
gi|325116150|emb|CBZ51704.1| hypothetical protein NCLIV_014990 [Neospora caninum Liverpool]
Length = 1033
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 74/217 (34%), Positives = 114/217 (52%), Gaps = 28/217 (12%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV+V G +MFDCG+H AY+ P F + + ++D +ITH
Sbjct: 111 LGAGCEVGRSCVIVRYKGVTVMFDCGVHPAYSGLGALPIFDAVDMT-----SVDVCLITH 165
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV------------LVDRRG 115
FHLDH GALP+ + G ++MT PTR ++ ++ DY ++ +R
Sbjct: 166 FHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFSQAPEQANAAASQRA 225
Query: 116 EVEQ----------FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYA 165
Q + D + + ++ +D Q V+V ++I + AGHVLGA MF
Sbjct: 226 SSGQGDKSGAGNYLYDEDDVDKTVQMAECLDFHQQVEVG-GVKISCFGAGHVLGACMFLI 284
Query: 166 KVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
++G M+YTGD++ DRH+ A + + + LLI E
Sbjct: 285 EIGGVRMLYTGDFSREKDRHVPIAEVPPVDVQLLICE 321
>gi|237839761|ref|XP_002369178.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii ME49]
gi|211966842|gb|EEB02038.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii ME49]
Length = 1100
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 71/217 (32%), Positives = 113/217 (52%), Gaps = 28/217 (12%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV+ G +MFDCG+H AY+ P F + + ++D ++TH
Sbjct: 115 LGAGCEVGRSCVIARYKGLTVMFDCGVHPAYSGLGALPIFDAVDMT-----SVDVCLVTH 169
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-------- 119
FHLDH GALP+ + G ++MT PTR ++ ++ DY ++ +G +
Sbjct: 170 FHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFSQGSRDNQGAAAAQA 229
Query: 120 --------------FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYA 165
+ D + ++ V +D Q V+V +++ + AGHVLGA MF
Sbjct: 230 AAGSQAEKAGGAFLYDEDDVDATVRMVECLDFHQQVEVG-GIKVSCFGAGHVLGACMFLI 288
Query: 166 KVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
++G M+YTGD++ DRH+ A + + + LLI E
Sbjct: 289 EIGGVRMLYTGDFSRESDRHVPIAEVPPVDVQLLICE 325
>gi|154422115|ref|XP_001584070.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
gi|121918315|gb|EAY23084.1| RNA-metabolising metallo-beta-lactamase family protein [Trichomonas
vaginalis G3]
Length = 588
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 110/197 (55%), Gaps = 10/197 (5%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
+ GAG EVG+S ++V I K+++ DCG++ D + R+ D +D ++I
Sbjct: 16 ICFGAGGEVGRSSILVEIGSKKVLLDCGVNFTATDEKD-----RLPAYQDPFPKVDLVLI 70
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
+H H DH+ A+P+ TE+ P+YMT ++ + PIML+D+ KV E + ++ +
Sbjct: 71 SHIHTDHLAAVPYLTEVLKCQAPVYMTRASQMMMPIMLDDFLKVT-----ENPPYKAEDL 125
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
C K+ V+ + + ++A+ AGH+LGAA F+ +V + +YTGD++ D H
Sbjct: 126 TNCKPKIKVVEFYSRFEAAPGIFVQAFPAGHILGAACFFVQVRGLSFIYTGDFSAIADHH 185
Query: 186 LGAARIDRLQLDLLITE 202
L + RL DLLITE
Sbjct: 186 LSGHAVPRLFPDLLITE 202
>gi|71005902|ref|XP_757617.1| hypothetical protein UM01470.1 [Ustilago maydis 521]
gi|74703664|sp|Q4PEJ3.1|YSH1_USTMA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|46097110|gb|EAK82343.1| hypothetical protein UM01470.1 [Ustilago maydis 521]
Length = 880
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 74/200 (37%), Positives = 113/200 (56%), Gaps = 11/200 (5%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC V+ GK I+ D G+H A+ P + S +D I+IT
Sbjct: 28 MLGAGQEVGRSCCVLKYRGKTIVCDTGVHPAFTGIAALPFIDELDWS-----TVDAILIT 82
Query: 67 HFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-FTS 122
HFHLDH AL + E + +G +YMT+PT+A+ ++ D+ V + G + F
Sbjct: 83 HFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDF--VRISNAGNDDNLFDE 140
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + +++ AVD Q V + L+ +Y+AGHVLGA MF ++ ++YTGD++
Sbjct: 141 NEMLASWRQIEAVDFHQDVSIAGGLRFTSYHAGHVLGACMFLIEIAGLRILYTGDFSREE 200
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A I ++ D+LI E
Sbjct: 201 DRHLVQAEIPPVKPDVLICE 220
>gi|409044817|gb|EKM54298.1| hypothetical protein PHACADRAFT_146128 [Phanerochaete carnosa
HHB-10118-sp]
Length = 869
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 74/203 (36%), Positives = 110/203 (54%), Gaps = 10/203 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ +LGAGQEVG+SC V+ G+ I+ D G+H AY+ P + S +D
Sbjct: 8 LNITLLGAGQEVGRSCCVLQYRGRTIVCDTGVHPAYSGIASLPFIDELDWS-----TVDV 62
Query: 63 IVITHFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
I+ITHFHLDH AL + TE + G IYMT+PT+AL M++D+ V +
Sbjct: 63 ILITHFHLDHAAALTYITEKTNFRDGKGKIYMTHPTKALHKFMMQDF--VRMGSSSSDAL 120
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
F+ ++ + +I V Q + + Y+AGHVLGA MF + ++YTGDY+
Sbjct: 121 FSPMELSVSLASIIPVSAHQVISPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTGDYS 180
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
DRHL A + ++ D+LI E
Sbjct: 181 REEDRHLVKAEVPPIRPDVLIVE 203
>gi|195037533|ref|XP_001990215.1| GH19212 [Drosophila grimshawi]
gi|193894411|gb|EDV93277.1| GH19212 [Drosophila grimshawi]
Length = 686
Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/195 (38%), Positives = 112/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + ID + I+H
Sbjct: 25 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEA-----DEIDLLFISH 79
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + G +MT+ T+A+ ML DY K+ + + +T +
Sbjct: 80 FHLDHCGALPWFLMKTSFRGRCFMTHATKAIYRWMLSDYIKI-SNISTDQMLYTEADLEA 138
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 139 SMEKIETINFHEERDV-MGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLM 197
Query: 188 AARIDRLQLDLLITE 202
AA + + D+LITE
Sbjct: 198 AAEVPPKKPDVLITE 212
>gi|360043111|emb|CCD78523.1| cleavage and polyadenylation specificity factor-related
[Schistosoma mansoni]
Length = 670
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 112/197 (56%), Gaps = 8/197 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++T GK+I+ DCG+H + P I D I+I+H
Sbjct: 18 LGAGQEVGRSCILLTFKGKKIILDCGIHPGLRNRESLPFIDAIPDI----QTTDLILISH 73
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH G LP G YMT+ T+A+ +L D+ +V + G +Q ++ I
Sbjct: 74 FHLDHCGGLPHLLLKTGAKSKCYMTHATKAIYRYLLADFVRV-SNSGGLPDQLLYSDRDI 132
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
+ + +D Q ++V+ ++ AY+AGHVLGAAMF ++ ++YTGD++ DRH
Sbjct: 133 VASLDHIDTIDFHQELEVN-GIKFSAYHAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRH 191
Query: 186 LGAARIDRLQLDLLITE 202
L A I ++ D+LITE
Sbjct: 192 LMCAEIPPIRPDVLITE 208
>gi|256086716|ref|XP_002579538.1| cleavage and polyadenylation specificity factor-related
[Schistosoma mansoni]
Length = 670
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 112/197 (56%), Gaps = 8/197 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++T GK+I+ DCG+H + P I D I+I+H
Sbjct: 18 LGAGQEVGRSCILLTFKGKKIILDCGIHPGLRNRESLPFIDAIPDI----QTTDLILISH 73
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH G LP G YMT+ T+A+ +L D+ +V + G +Q ++ I
Sbjct: 74 FHLDHCGGLPHLLLKTGAKSKCYMTHATKAIYRYLLADFVRV-SNSGGLPDQLLYSDRDI 132
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
+ + +D Q ++V+ ++ AY+AGHVLGAAMF ++ ++YTGD++ DRH
Sbjct: 133 VASLDHIDTIDFHQELEVN-GIKFSAYHAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRH 191
Query: 186 LGAARIDRLQLDLLITE 202
L A I ++ D+LITE
Sbjct: 192 LMCAEIPPIRPDVLITE 208
>gi|354543719|emb|CCE40441.1| hypothetical protein CPAR2_104770 [Candida parapsilosis]
Length = 776
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 68/210 (32%), Positives = 116/210 (55%), Gaps = 23/210 (10%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM D GMH A + H +P F S +D ++++H
Sbjct: 19 LGGCNEVGRSCHIIEYKNKVIMLDAGMHPALSGHASFPYFDEYDLS-----KVDILLVSH 73
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLV---------------D 112
FH+DH +LP+ + + G ++MT+ T+A+ +++D+ +V D
Sbjct: 74 FHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRTEGGGSTSSND 133
Query: 113 RRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAM 172
G + +T D I + ++ +D T++VD ++ AYYAGHVLGA M+ ++G +
Sbjct: 134 EGGNI--YTDDDIFKSFDRIETIDFHSTMEVD-GIRFTAYYAGHVLGACMYLIEIGGLKI 190
Query: 173 VYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
++TGDY+ +RHL +A + ++ D+LITE
Sbjct: 191 LFTGDYSREENRHLPSAEVPPVKPDVLITE 220
>gi|221504752|gb|EEE30417.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii VEG]
Length = 1100
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 71/217 (32%), Positives = 113/217 (52%), Gaps = 28/217 (12%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV+ G +MFDCG+H AY+ P F + + ++D ++TH
Sbjct: 115 LGAGCEVGRSCVIARYKGLTVMFDCGVHPAYSGLGALPIFDAVDMT-----SVDVCLVTH 169
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-------- 119
FHLDH GALP+ + G ++MT PTR ++ ++ DY ++ +G +
Sbjct: 170 FHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFSQGSRDNQGAAAAQA 229
Query: 120 --------------FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYA 165
+ D + ++ V +D Q V+V +++ + AGHVLGA MF
Sbjct: 230 AAGSQAEKAGGAFLYDEDDVDATVRMVECLDFHQQVEVG-GIKVSCFGAGHVLGACMFLI 288
Query: 166 KVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
++G M+YTGD++ DRH+ A + + + LLI E
Sbjct: 289 EIGGVRMLYTGDFSRERDRHVPIAEVPPVDVQLLICE 325
>gi|221484558|gb|EEE22852.1| cleavage and polyadenylation specificity factor, putative
[Toxoplasma gondii GT1]
Length = 1100
Score = 134 bits (336), Expect = 3e-29, Method: Composition-based stats.
Identities = 71/217 (32%), Positives = 113/217 (52%), Gaps = 28/217 (12%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV+ G +MFDCG+H AY+ P F + + ++D ++TH
Sbjct: 115 LGAGCEVGRSCVIARYKGLTVMFDCGVHPAYSGLGALPIFDAVDMT-----SVDVCLVTH 169
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-------- 119
FHLDH GALP+ + G ++MT PTR ++ ++ DY ++ +G +
Sbjct: 170 FHLDHCGALPYLVTKTAFRGRVFMTEPTRVISKLVWLDYARMSAFSQGSRDNQGAAAAQA 229
Query: 120 --------------FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYA 165
+ D + ++ V +D Q V+V +++ + AGHVLGA MF
Sbjct: 230 AAGSQAEKAGGAFLYDEDDVDATVRMVECLDFHQQVEVG-GIKVSCFGAGHVLGACMFLI 288
Query: 166 KVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
++G M+YTGD++ DRH+ A + + + LLI E
Sbjct: 289 EIGGVRMLYTGDFSRERDRHVPIAEVPPVDVQLLICE 325
>gi|255718827|ref|XP_002555694.1| KLTH0G15202p [Lachancea thermotolerans]
gi|238937078|emb|CAR25257.1| KLTH0G15202p [Lachancea thermotolerans CBS 6340]
Length = 755
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 68/202 (33%), Positives = 113/202 (55%), Gaps = 15/202 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D G+H A+ P + S +D ++I+H
Sbjct: 18 LGGGNEVGRSCHILQYKGKTVMLDAGVHPAHQGLASLPFYDEFDLS-----TVDVLLISH 72
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV-------LVDRRGEVEQF 120
FHLDH +LP+ + + G ++MT+PT+A+ +L D+ KV D+ + +
Sbjct: 73 FHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLSDFVKVTSIGSTSFSDKDENL--Y 130
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T + +AE ++ +D T+ V+ ++ A++AGHVLGAAMF ++ +++TGDY+
Sbjct: 131 TDEDLAESFDRIETIDFHSTIDVN-GIKFVAFHAGHVLGAAMFQVEIAGLKILFTGDYSR 189
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL +A + D+LI E
Sbjct: 190 ETDRHLNSAEVPPSSSDVLIVE 211
>gi|150865856|ref|XP_001385241.2| hypothetical protein PICST_89936 [Scheffersomyces stipitis CBS
6054]
gi|149387112|gb|ABN67212.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 793
Score = 133 bits (334), Expect = 4e-29, Method: Composition-based stats.
Identities = 68/204 (33%), Positives = 113/204 (55%), Gaps = 15/204 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM D G+H A H +P + S +D ++I+H
Sbjct: 19 LGGCNEVGRSCHIIEYKNKVIMLDAGVHPALTGHSSFPFYDEYDLS-----KVDILLISH 73
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVL---VDRRGE------VE 118
FHLDH +LP+ + + G ++MT+ T+A+ +L+D+ +V R E
Sbjct: 74 FHLDHAASLPYVMQHTTFKGRVFMTHATKAIYRWLLQDFVRVTSIGAGSRAEGSDETSTN 133
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDY 178
+T D I ++ +D T+++D ++ AY+AGHVLGA M++ ++G +++TGDY
Sbjct: 134 LYTDDDIISSFDRIETIDYHSTMEID-GIRFTAYHAGHVLGACMYFVEIGGLKVLFTGDY 192
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
+ +RHL AA + + D+LITE
Sbjct: 193 SREENRHLHAAEVPPTRPDILITE 216
>gi|241951638|ref|XP_002418541.1| cleavage and polyadenylation factor specificity complex subunit,
putative; endonuclease, putative [Candida dubliniensis
CD36]
gi|223641880|emb|CAX43843.1| cleavage and polyadenylation factor specificity complex subunit,
putative [Candida dubliniensis CD36]
Length = 787
Score = 133 bits (334), Expect = 5e-29, Method: Composition-based stats.
Identities = 66/205 (32%), Positives = 113/205 (55%), Gaps = 16/205 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM D GMH A + H +P F S +D ++I+H
Sbjct: 18 LGGCNEVGRSCHIIEYKNKVIMLDAGMHPALSGHASFPYFDEYDIS-----KVDILLISH 72
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV----------LVDRRGEV 117
FH+DH +LP+ + + G ++MT+ T+A+ +++D+ +V
Sbjct: 73 FHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSGDGSGGGEGS 132
Query: 118 EQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
+T D I + ++ +D T+++D ++ AY+AGHVLGA M++ ++G +++TGD
Sbjct: 133 NLYTDDDIMKSFDRIETIDYHSTMEID-GIRFTAYHAGHVLGACMYFVEIGGLKVLFTGD 191
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
Y+ +RHL AA + L+ D+LI E
Sbjct: 192 YSREENRHLHAAEVPPLKPDILICE 216
>gi|391348443|ref|XP_003748457.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Metaseiulus occidentalis]
Length = 673
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 114/196 (58%), Gaps = 7/196 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+I+ D G+H N P +I + ID ++++H
Sbjct: 13 LGAGQEVGRSCMIIEFKGKKILLDMGIHPGMNGVDALPFVDQIDA-----DEIDLLLVSH 67
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVL-VDRRGEVEQFTSDHIA 126
FHLDH GALP+F + + G +MT+ T+A+ +L D KV + +T +
Sbjct: 68 FHLDHCGALPWFLQKTTFKGRCFMTHATKAIYRWLLADCIKVSNIGSTSSNNLYTEADLE 127
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
M K+ ++ + +++ ++ Y+AGHVLGAAMF+ ++ ++YTGD++ DRHL
Sbjct: 128 ASMDKIEVINFHEEKEIN-GIRFWCYHAGHVLGAAMFFIEIAGVKILYTGDFSRQEDRHL 186
Query: 187 GAARIDRLQLDLLITE 202
+A I ++ D+LI E
Sbjct: 187 MSAEIPSVKPDVLIIE 202
>gi|448517227|ref|XP_003867743.1| endoribonuclease [Candida orthopsilosis Co 90-125]
gi|380352082|emb|CCG22306.1| endoribonuclease [Candida orthopsilosis]
Length = 769
Score = 132 bits (333), Expect = 6e-29, Method: Composition-based stats.
Identities = 68/205 (33%), Positives = 117/205 (57%), Gaps = 16/205 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM D GMH A + H +P F S +D ++++H
Sbjct: 19 LGGCNEVGRSCHIIEYKNKVIMLDAGMHPALSGHASFPYFDEYDLS-----KVDILLVSH 73
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV--LVDRRGEVEQ------ 119
FH+DH +LP+ + + G ++MT+ T+A+ +++D+ +V + + R E
Sbjct: 74 FHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRTEGGGGNDEGG 133
Query: 120 --FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
+T D I + ++ +D T++VD ++ AYYAGHVLGA M+ ++G +++TGD
Sbjct: 134 NLYTDDDIFKSFDRIETIDFHSTMEVD-GIRFTAYYAGHVLGACMYLIEIGGLKVLFTGD 192
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
Y+ +RHL +A + ++ D+LITE
Sbjct: 193 YSREENRHLPSAEVPPVKPDVLITE 217
>gi|195452860|ref|XP_002073532.1| GK13096 [Drosophila willistoni]
gi|194169617|gb|EDW84518.1| GK13096 [Drosophila willistoni]
Length = 684
Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 112/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ GK+IM DCG+H + P I + ID + I+H
Sbjct: 23 LGAGQEVGRSCIMLEFKGKKIMLDCGIHPGLSGMDALPYVDLIEA-----DEIDLLFISH 77
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FH+DH GALP+F + G +MT+ T+A+ ML D+ K+ + + +T +
Sbjct: 78 FHIDHCGALPWFLMKTSFKGRCFMTHATKAIYRWMLSDFIKI-SNISTDQMLYTEADLEA 136
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+K+ ++ + V ++ AY AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 137 SMEKIETINFHEERDV-MGVRFCAYNAGHVLGAAMFMIEIAGIKILYTGDFSRQEDRHLM 195
Query: 188 AARIDRLQLDLLITE 202
AA + + D+LITE
Sbjct: 196 AAEVPPTKPDVLITE 210
>gi|388852694|emb|CCF53612.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Ustilago hordei]
Length = 888
Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 113/199 (56%), Gaps = 9/199 (4%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC V+ GK I+ D G+H A+ P + S +D I+IT
Sbjct: 28 MLGAGQEVGRSCCVLKYKGKTIVCDTGVHPAFTGIAALPFIDELDWST-----VDAILIT 82
Query: 67 HFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
HFHLDH AL + E + +G +YMT+PT+A+ ++ D+ ++ + E F +
Sbjct: 83 HFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDFVRI-SNAGNEDHLFDEN 141
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
+ +++ AVD Q V + L+ AY+AGHVLGA MF ++ ++YTGD++ D
Sbjct: 142 EMLASWRQIEAVDFHQDVSIAGGLRFTAYHAGHVLGACMFLIEIAGLRILYTGDFSREED 201
Query: 184 RHLGAARIDRLQLDLLITE 202
RHL A I ++ D+LI E
Sbjct: 202 RHLVQAEIPPVKPDVLICE 220
>gi|392297785|gb|EIW08884.1| Ysh1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 772
Score = 132 bits (333), Expect = 7e-29, Method: Composition-based stats.
Identities = 66/195 (33%), Positives = 107/195 (54%), Gaps = 6/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ GK +M D G+H AY P + S +D ++I+H
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLS-----KVDILLISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH +LP+ + + G ++MT+PT+A+ +L D+ F+ + + +
Sbjct: 69 FHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVXXXXXXXXXXGLFSDEDLVD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
K+ VD TV V+ ++ A++AGHVLGAAMF ++ +++TGDY+ DRHL
Sbjct: 129 SFDKIETVDYHSTVDVN-GIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLN 187
Query: 188 AARIDRLQLDLLITE 202
+A + L ++LI E
Sbjct: 188 SAEVPPLSSNVLIVE 202
>gi|401837471|gb|EJT41396.1| YSH1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 779
Score = 132 bits (331), Expect = 1e-28, Method: Composition-based stats.
Identities = 70/205 (34%), Positives = 113/205 (55%), Gaps = 15/205 (7%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG EVG+SC ++ GK +M D G+H AY P + DF+ + ID ++
Sbjct: 12 LSLGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYD------DFDLSKIDILL 65
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ----- 119
I+HFHLDH +LP+ + + G ++MT+PT+A+ +L D+ +V
Sbjct: 66 ISHFHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGGKDE 125
Query: 120 --FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
F+ + + + K+ VD TV V+ ++ A++AGHVLGAAMF ++ +++TGD
Sbjct: 126 SLFSDEDLVDSFDKIETVDYHSTVDVN-GIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGD 184
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
Y+ DRHL +A + L ++LI E
Sbjct: 185 YSREVDRHLNSAEVPPLSSNVLIVE 209
>gi|393217572|gb|EJD03061.1| Metallo-hydrolase/oxidoreductase [Fomitiporia mediterranea MF3/22]
Length = 826
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 69/199 (34%), Positives = 108/199 (54%), Gaps = 10/199 (5%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC V+ GK ++ D G H A+N P + S +D I++T
Sbjct: 11 MLGAGQEVGRSCCVIQYRGKTVVCDAGTHPAHNGMSALPFIDDLDWS-----TVDAILVT 65
Query: 67 HFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
HFH+DH +L + E + G +YMT+PT+ + +++D+ ++ + FTS
Sbjct: 66 HFHIDHAASLTYIMEKTNFRDGKGKVYMTHPTKGVYRFLMQDFMRISSTSTDGL--FTSV 123
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
++ + ++ V Q + V L Y+AGHVLGA MF + ++YTGDY+ D
Sbjct: 124 ELSMSLASIMTVSAHQLITVSPGLSFTPYHAGHVLGACMFLIDIAGLRILYTGDYSREED 183
Query: 184 RHLGAARIDRLQLDLLITE 202
RHL A I ++ D+LI E
Sbjct: 184 RHLVKAEIPPVRPDVLIVE 202
>gi|344302811|gb|EGW33085.1| hypothetical protein SPAPADRAFT_66091 [Spathaspora passalidarum
NRRL Y-27907]
Length = 762
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 66/203 (32%), Positives = 116/203 (57%), Gaps = 14/203 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM D G+H A H +P + S +D ++I+H
Sbjct: 17 LGGCNEVGRSCHIIEYKNKVIMLDAGIHPALTGHSSFPFYDEYDLS-----KVDILLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-------- 119
FHLDH +LP+ + + G ++MT T+A+ +L+D+ +V ++E
Sbjct: 72 FHLDHAASLPYVMQQTTFKGRVFMTQATKAIYRWLLQDFVRVTSIGTTKMEGGEGQSSNL 131
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+T+D I + ++ +D T++++ ++ AY+AGHVLGA M++ ++G +++TGDY+
Sbjct: 132 YTADDIMKSFDRIETIDYHSTMEIE-GIKFTAYHAGHVLGACMYFIEIGGLKVLFTGDYS 190
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
+RHL AA I ++ D+LI+E
Sbjct: 191 REENRHLHAAEIPPVKPDILISE 213
>gi|71027889|ref|XP_763588.1| cleavage and polyadenylation specificity factor protein [Theileria
parva strain Muguga]
gi|68350541|gb|EAN31305.1| cleavage and polyadenylation specificity factor protein, putative
[Theileria parva]
Length = 708
Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats.
Identities = 73/212 (34%), Positives = 114/212 (53%), Gaps = 22/212 (10%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
VLGAG EVG+SCV V +MFDCG+H A + P F + S + ++T
Sbjct: 9 VLGAGCEVGRSCVYVERENSCLMFDCGLHPALSGVGALPVFEAVDIS-----KVQVCLVT 63
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDY---------RKVLVDRRGEV 117
HFHLDH GA+P+ +NG I MT T+++ ++ DY + + D +
Sbjct: 64 HFHLDHCGAVPYLLSKTKFNGRILMTPATKSICHLLWTDYARMEQLLTVKTIFNDDDESM 123
Query: 118 EQ-------FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS 170
++ ++ + + + ++ +D Q + V+ D++I Y AGHVLGA MF ++G
Sbjct: 124 DELVCGSGLYSFEDVEHALDRIETIDFHQEITVN-DMKISCYRAGHVLGACMFLIEIGGV 182
Query: 171 AMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
++YTGDY+M DRHL +A I + LLI+E
Sbjct: 183 RILYTGDYSMEKDRHLPSAEIPLTNVHLLISE 214
>gi|324506922|gb|ADY42942.1| Cleavage and polyadenylation specificity factor subunit 3 [Ascaris
suum]
Length = 706
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 118/199 (59%), Gaps = 12/199 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMH--MAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
LG+GQEVG+SC +T GK+I+ DCG+H M+ D + DF C+ +D +++
Sbjct: 27 LGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFV----DCE---ELDLLLV 79
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSD 123
THFHLDH GA+P+ E + G +MT+ T+A+ +++ DY KV G + +T +
Sbjct: 80 THFHLDHCGAVPWLLEKTAFRGRCFMTHATKAIYRMLIGDYLKVSKYGGGSDNRLLYTEE 139
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
+ + M+K+ +D + +V+ ++ Y AGHVLGA MF ++ ++YTGD++ D
Sbjct: 140 DLEKSMEKIEVIDFHEQKEVN-GIKFWCYVAGHVLGACMFMIEIAGVRVLYTGDFSRLED 198
Query: 184 RHLGAARIDRLQLDLLITE 202
RHL AA + + D+LI E
Sbjct: 199 RHLCAAELPTVSPDVLICE 217
>gi|343428147|emb|CBQ71677.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Sporisorium reilianum SRZ2]
Length = 878
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 75/200 (37%), Positives = 113/200 (56%), Gaps = 11/200 (5%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC V+ GK I+ D G+H A+ P + S +D I+IT
Sbjct: 28 MLGAGQEVGRSCCVLKYKGKTIVCDTGVHPAFTGIAALPFIDELDWST-----VDAILIT 82
Query: 67 HFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-FTS 122
HFHLDH AL + E + +G +YMT+PT+A+ ++ D+ V + G + F
Sbjct: 83 HFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDF--VRISNAGNDDNLFDE 140
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + +++ AVD Q V + L+ AY+AGHVLGA MF ++ ++YTGD++
Sbjct: 141 NEMFASWRQIEAVDFHQDVSIAGGLRFTAYHAGHVLGACMFLIEIAGLRILYTGDFSREE 200
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A I ++ D+LI E
Sbjct: 201 DRHLVQAEIPPVKPDVLICE 220
>gi|345563625|gb|EGX46611.1| hypothetical protein AOL_s00097g515 [Arthrobotrys oligospora ATCC
24927]
Length = 791
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 116/199 (58%), Gaps = 12/199 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC +V GK +M D G+H AY+ P + DF+ + +D ++I+
Sbjct: 26 LGGGSEVGRSCHIVQYKGKTVMLDAGVHPAYDGISSLPFYD------DFDLSTVDILLIS 79
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS--DH 124
HFHLDH G+LP+ + G ++MT+PT+A+ ++ D +V + Q S DH
Sbjct: 80 HFHLDHAGSLPYVLTKTNFRGRVFMTHPTKAIYKWLMSDSVRVSNTTSEQTTQLFSETDH 139
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
++ ++ A+D QT+ + I Y AGHVLGAAMF ++ +++TGDY+ DR
Sbjct: 140 LS-SFSQISAIDYYQTLH-HSSIAITPYPAGHVLGAAMFLIEIAGLKILFTGDYSREDDR 197
Query: 185 HLGAARIDR-LQLDLLITE 202
HL +A + + ++ D+LITE
Sbjct: 198 HLVSASLPKHIKPDILITE 216
>gi|412990885|emb|CCO18257.1| predicted protein [Bathycoccus prasinos]
Length = 825
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 116/215 (53%), Gaps = 21/215 (9%)
Query: 3 IDCLVLGAGQEVGKSCVVVTI--NGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
++ + LGAG EVG+SC+V + K +MFDCG+H ++ P F I S AI
Sbjct: 48 LELIPLGAGSEVGRSCIVASFFEGKKNVMFDCGIHPGFSGLSSLPYFDEIDVS-----AI 102
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEV--- 117
D +++THFHLDH A+PF + G ++MT+ T+A+ +++ D+ ++ ++ +
Sbjct: 103 DVLLVTHFHLDHCAAVPFLVNRTNFKGRVFMTHATKAIFHMLMSDFVRLSARQQPKAKGS 162
Query: 118 ----------EQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKV 167
+ + + + M K+ +D Q + +D +++ Y AGHVLGA F V
Sbjct: 163 EEKEEEEDESQLWDAKDLKAAMDKIEVIDFHQEINID-GIKVTPYRAGHVLGACQFEVNV 221
Query: 168 GDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
G ++YTGDY+ DRHL AA I + ++I E
Sbjct: 222 GGCRVLYTGDYSRVADRHLPAADIPKKTPHVVIVE 256
>gi|401624491|gb|EJS42547.1| ysh1p [Saccharomyces arboricola H-6]
Length = 779
Score = 130 bits (328), Expect = 2e-28, Method: Composition-based stats.
Identities = 69/202 (34%), Positives = 110/202 (54%), Gaps = 13/202 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC V+ GK +M D G+H AY P + S ID ++I+H
Sbjct: 14 LGGSNEVGRSCHVLQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLS-----KIDILLISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV-------LVDRRGEVEQF 120
FHLDH +LP+ + + G ++MT+PT+A+ +L D+ +V + F
Sbjct: 69 FHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGGKDESLF 128
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+ + + + K+ VD TV V+ ++ A++AGHVLGAAMF ++ +++TGDY+
Sbjct: 129 SDEDLVDSFDKIETVDYHSTVDVN-GIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSR 187
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL +A + L ++LI E
Sbjct: 188 EVDRHLNSAEVPPLSSNVLIVE 209
>gi|170093225|ref|XP_001877834.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164647693|gb|EDR11937.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 772
Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 73/203 (35%), Positives = 110/203 (54%), Gaps = 10/203 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
+ +LGAGQEVG+SC V+ G+ I+ D G+H AYN P + S +D
Sbjct: 7 LSVTMLGAGQEVGRSCCVLQYRGRTIVCDTGVHPAYNGIASLPFIDELDWST-----VDA 61
Query: 63 IVITHFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
I+ITHFHLDH AL + TE + G +YMT+PT+A+ M++DY ++ +
Sbjct: 62 ILITHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKAVHKFMMQDYVRMGSSTSDAL-- 119
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
F+ + + +I V Q + + + Y+AGHVLGA MF + ++YTGDY+
Sbjct: 120 FSPLDMTMSLASIIPVSAHQLITICPGVSFTPYHAGHVLGACMFLIDIAGLKILYTGDYS 179
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
DRHL A + ++ D+LI E
Sbjct: 180 REEDRHLVKAELPPVRPDVLIVE 202
>gi|149245028|ref|XP_001527048.1| hypothetical protein LELG_01877 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449442|gb|EDK43698.1| hypothetical protein LELG_01877 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 812
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 68/214 (31%), Positives = 117/214 (54%), Gaps = 25/214 (11%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM D GMH A + H +P F S +D ++I+H
Sbjct: 18 LGGCNEVGRSCHIIEYKNKVIMLDAGMHPALSGHASFPFFDEYDLS-----KVDILLISH 72
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV--LVDRRGEV-------- 117
FH+DH +LP+ + + G ++MT+ T+A+ +++D+ +V + + R E
Sbjct: 73 FHVDHSASLPYVMQQSNFKGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSEGGGTSATGA 132
Query: 118 ---------EQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVG 168
+T D I + ++ +D T+++D ++ AY+AGHVLGA M++ ++G
Sbjct: 133 SGSLNEEGGNLYTDDDIFKSFDRIETIDYHSTMEID-GIKFTAYHAGHVLGACMYFIEIG 191
Query: 169 DSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
+++TGDY+ +RHL AA + + D+LITE
Sbjct: 192 GLKVLFTGDYSREENRHLQAAEVPPTRPDILITE 225
>gi|50304897|ref|XP_452404.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74636942|sp|Q6CUI5.1|YSH1_KLULA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|49641537|emb|CAH01255.1| KLLA0C04598p [Kluyveromyces lactis]
Length = 764
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 67/201 (33%), Positives = 114/201 (56%), Gaps = 12/201 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ GK +M D G+H A+ P + S ID ++I+H
Sbjct: 19 LGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLS-----TIDLLLISH 73
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV--LVDRRGEVEQ----FT 121
FHLDH +LP+ + + G ++MT+PT+A+ +L D+ KV + D G+ ++
Sbjct: 74 FHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNLYS 133
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+ +AE ++ +D T++V+ ++ A++AGHVLGAAMF ++ +++TGDY+
Sbjct: 134 DEDLAESFDRIETIDYHSTMEVN-GIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSRE 192
Query: 182 PDRHLGAARIDRLQLDLLITE 202
DRHL +A + D++I E
Sbjct: 193 VDRHLNSAEVPPQSSDVIIVE 213
>gi|349579985|dbj|GAA25146.1| K7_Ysh1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 779
Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats.
Identities = 68/202 (33%), Positives = 112/202 (55%), Gaps = 13/202 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ GK +M D G+H AY P + S +D ++I+H
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLS-----KVDILLISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV-----LVDRRGEVEQ--F 120
FHLDH +LP+ + + G ++MT+PT+A+ +L D+ +V G ++ F
Sbjct: 69 FHLDHAASLPYVMQRTNFQGKVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLF 128
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+ + + + K+ VD TV V+ ++ A++AGHVLGAAMF ++ +++TGDY+
Sbjct: 129 SDEDLVDSFDKIETVDYHSTVDVN-GIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSR 187
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL +A + L ++LI E
Sbjct: 188 EVDRHLNSAEVPPLSSNVLIVE 209
>gi|76156582|gb|AAX27764.2| SJCHGC03746 protein [Schistosoma japonicum]
Length = 251
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 113/197 (57%), Gaps = 8/197 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++T GK+I+ DCG+H + P I + D ++I+H
Sbjct: 19 LGAGQEVGRSCILLTFKGKKIILDCGIHPGLRNRESLPFIDAIPDI----QSTDLVLISH 74
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FHLDH G LP G YMT+ T+A+ +L D+ +V + G +Q ++ I
Sbjct: 75 FHLDHCGGLPHLLLKTGAKLKCYMTHATKAIYRYLLADFVRV-SNSGGLPDQALYSDRDI 133
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
+ + +D Q ++V+ ++ A++AGHVLGAAMF ++ ++YTGD++ DRH
Sbjct: 134 VASLDHIETIDFHQELEVNG-IKFSAFHAGHVLGAAMFLIEIAGVKILYTGDFSRQEDRH 192
Query: 186 LGAARIDRLQLDLLITE 202
L A + ++ D+LITE
Sbjct: 193 LMCAEVPPIRPDVLITE 209
>gi|443899092|dbj|GAC76423.1| mRNA cleavage and polyadenylation factor II complex, BRR5
[Pseudozyma antarctica T-34]
Length = 884
Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/200 (37%), Positives = 113/200 (56%), Gaps = 11/200 (5%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC V+ GK I+ D G+H A+ P + S +D I+IT
Sbjct: 28 MLGAGQEVGRSCCVLKYKGKTIVCDTGVHPAFTGIAALPFIDELDWST-----VDAILIT 82
Query: 67 HFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-FTS 122
HFHLDH AL + E + +G +YMT+PT+A+ ++ D+ V + G + F
Sbjct: 83 HFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDF--VRISNAGNDDNLFDE 140
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + +++ AVD Q V + L+ +Y+AGHVLGA MF ++ ++YTGD++
Sbjct: 141 NEMLASWRQIEAVDFHQDVSIAGGLRFTSYHAGHVLGACMFLIEIAGLRILYTGDFSREE 200
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A I ++ D+LI E
Sbjct: 201 DRHLVQAEIPPVRPDVLICE 220
>gi|6323307|ref|NP_013379.1| Ysh1p [Saccharomyces cerevisiae S288c]
gi|74644951|sp|Q06224.1|YSH1_YEAST RecName: Full=Endoribonuclease YSH1; AltName: Full=Yeast 73 kDa
homolog 1; AltName: Full=mRNA 3'-end-processing protein
YSH1
gi|577190|gb|AAB67367.1| Ysh1p: subunit of polyadenylation factor I (PF I) [Saccharomyces
cerevisiae]
gi|151940984|gb|EDN59365.1| cleavage factor II (CF II) component [Saccharomyces cerevisiae
YJM789]
gi|190405336|gb|EDV08603.1| hypothetical protein SCRG_04228 [Saccharomyces cerevisiae RM11-1a]
gi|256269831|gb|EEU05091.1| Ysh1p [Saccharomyces cerevisiae JAY291]
gi|285813694|tpg|DAA09590.1| TPA: Ysh1p [Saccharomyces cerevisiae S288c]
gi|323332373|gb|EGA73782.1| Ysh1p [Saccharomyces cerevisiae AWRI796]
Length = 779
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 68/202 (33%), Positives = 112/202 (55%), Gaps = 13/202 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ GK +M D G+H AY P + S +D ++I+H
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLS-----KVDILLISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV-----LVDRRGEVEQ--F 120
FHLDH +LP+ + + G ++MT+PT+A+ +L D+ +V G ++ F
Sbjct: 69 FHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLF 128
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+ + + + K+ VD TV V+ ++ A++AGHVLGAAMF ++ +++TGDY+
Sbjct: 129 SDEDLVDSFDKIETVDYHSTVDVN-GIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSR 187
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL +A + L ++LI E
Sbjct: 188 EVDRHLNSAEVPPLSSNVLIVE 209
>gi|259148260|emb|CAY81507.1| Ysh1p [Saccharomyces cerevisiae EC1118]
Length = 779
Score = 130 bits (326), Expect = 4e-28, Method: Composition-based stats.
Identities = 68/202 (33%), Positives = 112/202 (55%), Gaps = 13/202 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ GK +M D G+H AY P + S +D ++I+H
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLS-----KVDILLISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV-----LVDRRGEVEQ--F 120
FHLDH +LP+ + + G ++MT+PT+A+ +L D+ +V G ++ F
Sbjct: 69 FHLDHAASLPYVMQRTNFEGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLF 128
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+ + + + K+ VD TV V+ ++ A++AGHVLGAAMF ++ +++TGDY+
Sbjct: 129 SDEDLVDSFDKIETVDYHSTVDVN-GIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSR 187
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL +A + L ++LI E
Sbjct: 188 EVDRHLNSAEVPPLSSNVLIVE 209
>gi|336371935|gb|EGO00275.1| hypothetical protein SERLA73DRAFT_73000 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384684|gb|EGO25832.1| hypothetical protein SERLADRAFT_437559 [Serpula lacrymans var.
lacrymans S7.9]
Length = 748
Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 109/203 (53%), Gaps = 10/203 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
+ +LGAGQEVG+SC V+ GK I+ D G+H AY+ P + S +D
Sbjct: 7 LSVTLLGAGQEVGRSCCVLQYRGKTIVCDAGVHPAYSGMASLPFVDELDWST-----VDA 61
Query: 63 IVITHFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
I+ITHFHLDH AL + E + G +YMT+PT+A+ M++DY ++ +
Sbjct: 62 ILITHFHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKAVHKFMMQDYVRMSTSSTDAL-- 119
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
F+ + + +I V Q + + Y+AGHVLGA MF + ++YTGDY+
Sbjct: 120 FSPLEMTMSLSSIIPVSAHQLISPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTGDYS 179
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
DRHL +A + ++ D+LI E
Sbjct: 180 REEDRHLVSAEVPPVRPDVLIVE 202
>gi|392575747|gb|EIW68879.1| hypothetical protein TREMEDRAFT_44189 [Tremella mesenterica DSM
1558]
Length = 738
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 114/207 (55%), Gaps = 13/207 (6%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
++ +LGAGQEVG+SC V+ GK+I+ D G+H A+ P + S +D
Sbjct: 24 SLKITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAHPGMGSLPFIDEVDWST-----VD 78
Query: 62 CIVITHFHLDHIGALPFFTEICGYN---GPIYMTYPTRALAPIMLEDYRKVL---VDRRG 115
I+ITHFH+DH ALP+ E + G +YMT+ T+A+ + + D ++ D G
Sbjct: 79 AILITHFHVDHAAALPYIMERTNFKDGAGKVYMTHATKAIYGLTMMDAVRISDQNADNAG 138
Query: 116 EVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYT 175
+ +T + + IAVD Q + V L+ Y+AGHVLGA+MF ++ ++YT
Sbjct: 139 RL--YTEADVQSSWQNTIAVDYHQDIVVSGGLRFTPYHAGHVLGASMFMIEIAGLKILYT 196
Query: 176 GDYNMTPDRHLGAARIDRLQLDLLITE 202
GDY+ DRHL A + ++ D++I E
Sbjct: 197 GDYSREEDRHLVIAEVPPVKPDVMICE 223
>gi|392569726|gb|EIW62899.1| mRNA 3'-end-processing protein YSH1 [Trametes versicolor FP-101664
SS1]
Length = 805
Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats.
Identities = 72/199 (36%), Positives = 105/199 (52%), Gaps = 10/199 (5%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC V+ G+ I+ D G+H AY+ P + S +D ++IT
Sbjct: 11 LLGAGQEVGRSCCVLQYRGRTIVCDAGVHPAYSGIASLPFIDELDWS-----TVDVLLIT 65
Query: 67 HFHLDHIGALPFFTEICGYN---GPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
HFHLDH AL + E + G +YMT+PT+AL M++D+ V + FT
Sbjct: 66 HFHLDHAAALTYIMEKTNFKNGKGKVYMTHPTKALHKFMMQDF--VRMSSSSTDTLFTPL 123
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
++ + + V Q + + Y+AGHVLGA MF + ++YTGDY+ D
Sbjct: 124 EMSMSLASITTVSAHQVINPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTGDYSREED 183
Query: 184 RHLGAARIDRLQLDLLITE 202
RHL A I + D+LI E
Sbjct: 184 RHLVKAEIPPVHPDVLIVE 202
>gi|171689890|ref|XP_001909884.1| hypothetical protein [Podospora anserina S mat+]
gi|170944907|emb|CAP71018.1| unnamed protein product [Podospora anserina S mat+]
Length = 835
Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats.
Identities = 70/202 (34%), Positives = 113/202 (55%), Gaps = 13/202 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P F DF+ + +D ++
Sbjct: 29 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFD------DFDLSTVDVLL 82
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT--- 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q
Sbjct: 83 ISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQLVYTE 142
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH+ ++ A+D T +++ Y AGHVLGAAMF ++ + +TGDY+
Sbjct: 143 QDHL-NTFPQIEAIDY-HTTHTISGIRVTPYPAGHVLGAAMFLIEIAGLNIFFTGDYSRE 200
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A++ R +++D+LITE
Sbjct: 201 QDRHLVSAQVPRGVKIDVLITE 222
>gi|403419016|emb|CCM05716.1| predicted protein [Fibroporia radiculosa]
Length = 828
Score = 129 bits (324), Expect = 8e-28, Method: Composition-based stats.
Identities = 72/203 (35%), Positives = 108/203 (53%), Gaps = 10/203 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I +LGAGQEVG+SC V+ GK I+ D G+H AY+ P + S +D
Sbjct: 7 IKITLLGAGQEVGRSCCVIQYRGKTIVCDAGVHPAYSGIASLPFVDELDWS-----TVDV 61
Query: 63 IVITHFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
++ITHFHLDH AL + TE + G +YMT+PT+AL M++D+ ++ +
Sbjct: 62 LLITHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKALHKFMMQDFMRMSSSTSDAL-- 119
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
F+ ++ + +I V Q + + Y+AGHVLGA MF + ++YTGDY+
Sbjct: 120 FSPLDLSMSLSSIIPVSAHQVITPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTGDYS 179
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
D HL A + + D+LI E
Sbjct: 180 REEDCHLVKAEVPPFRPDVLIIE 202
>gi|426197081|gb|EKV47008.1| hypothetical protein AGABI2DRAFT_203789 [Agaricus bisporus var.
bisporus H97]
Length = 794
Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 112/211 (53%), Gaps = 16/211 (7%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
+ +LGAGQEVG+SC V+ GK ++ D G+H AYN P + S ++D
Sbjct: 7 LSVTMLGAGQEVGRSCCVLQYRGKTLVCDTGVHPAYNGMASLPFIDDLDWS-----SVDA 61
Query: 63 IVITHFHLDHIGALPFFTEICGYN---GPIYMTYPTRALAPIMLEDY---RKVLV----- 111
I+ITHFHLDH AL + TE + G +YMT+PT+AL M++D+ R+ L
Sbjct: 62 ILITHFHLDHAAALTYITEKTNFKDGKGKVYMTHPTKALHKFMMQDFVRTRRALSVKCPH 121
Query: 112 DRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA 171
F+ + + +IAV Q + V + Y+AGHVLGA MF +
Sbjct: 122 SSASSDALFSPLDMQMSLASIIAVSAHQLITVCPGVSFIPYHAGHVLGACMFLIDIAGLK 181
Query: 172 MVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
++YTGDY+ DRHL A + ++ D+L+ E
Sbjct: 182 ILYTGDYSREEDRHLIKAELPPIRPDVLVVE 212
>gi|299752177|ref|XP_001830756.2| mRNA 3'-end-processing protein YSH1 [Coprinopsis cinerea
okayama7#130]
gi|298409712|gb|EAU91125.2| mRNA 3'-end-processing protein YSH1 [Coprinopsis cinerea
okayama7#130]
Length = 846
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 111/204 (54%), Gaps = 10/204 (4%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
++ +LGAGQEVG+SC V+ GK ++ D G+H AY+ P + S +D
Sbjct: 6 SLKVTMLGAGQEVGRSCCVLQYRGKTVVCDTGVHPAYSGMASLPFIDDLDWST-----VD 60
Query: 62 CIVITHFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVE 118
I++THFHLDH AL + TE + G +YMT+PT+A+ M++D+ ++ +
Sbjct: 61 AILVTHFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKAVHKFMMQDFARMSSSTSDAL- 119
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDY 178
F+ + + +I V Q + V + Y+AGHVLGA MF + ++YTGDY
Sbjct: 120 -FSPLDMQMSLASIIPVSAHQLINVCPGVSFTPYHAGHVLGACMFLIDIAGLKILYTGDY 178
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
+ DRHL A + ++ D+LI E
Sbjct: 179 SREEDRHLVKAELPPIRPDVLIVE 202
>gi|20094663|ref|NP_614510.1| metal-dependent RNase [Methanopyrus kandleri AV19]
gi|19887824|gb|AAM02440.1| Predicted metal-dependent RNase, consists of a
metallo-beta-lactamase domain and an RNA-binding KH
domain [Methanopyrus kandleri AV19]
Length = 652
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 73/199 (36%), Positives = 110/199 (55%), Gaps = 8/199 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG QEVG+S + + R++ DCG+++A N YP F+ D +D IVITH
Sbjct: 199 LGGFQEVGRSSLFLHTEESRVLLDCGVNVAANGTDAYPHFNVPEFRMD---DLDAIVITH 255
Query: 68 FHLDHIGALPFFT--EICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
HLDH G LP+F ++ P+Y T PTR L ++L DY KVL ++RG+ +T +
Sbjct: 256 AHLDHCGFLPYFYRHKVIESRVPVYCTPPTRDLMYLLLTDYIKVL-EKRGQEPPYTEKDV 314
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
+ +K+ I +D ++ + D+ I Y AGH+LG+A + + D VYTGD N TP
Sbjct: 315 KKVIKRTITIDYREPTDITPDMSITFYNAGHILGSASVHVFLQDKGHNFVYTGDINPTPS 374
Query: 184 RHLGAARIDRLQLDLLITE 202
R L A ++D ++ E
Sbjct: 375 RLLEGADNRFKRVDSMVVE 393
>gi|85001073|ref|XP_955255.1| cleavage and polyadenylation specificty factor, subunit [Theileria
annulata strain Ankara]
gi|65303401|emb|CAI75779.1| cleavage and polyadenylation specificty factor, subunit, putative
[Theileria annulata]
Length = 1282
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 72/211 (34%), Positives = 114/211 (54%), Gaps = 21/211 (9%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
VLGAG EVG+SCV V + +MFDCG+H A + P F + S ++ ++T
Sbjct: 9 VLGAGCEVGRSCVYVERDNSCLMFDCGLHPALSGVGALPVFEAVDIS-----KVEVCLVT 63
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDY---------RKVLVDRRGEV 117
HFHLDH GA+P+ +NG I MT T+++ ++ DY + + D G
Sbjct: 64 HFHLDHCGAVPYLLSKTKFNGRILMTPATKSICHLLWTDYARMEQLLTVKTIFDDDDGMD 123
Query: 118 EQ------FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA 171
E ++ + + + ++ +D Q + V+ D++I Y AGHVLGA MF ++
Sbjct: 124 ELVCGSGLYSFEDVEYALDRIETIDFHQEITVN-DIKISCYRAGHVLGACMFLVEIDGVR 182
Query: 172 MVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
++YTGDY++ D+HL +A I + LLI+E
Sbjct: 183 ILYTGDYSVEKDKHLPSAEIPSTNVHLLISE 213
>gi|254582142|ref|XP_002497056.1| ZYRO0D14410p [Zygosaccharomyces rouxii]
gi|238939948|emb|CAR28123.1| ZYRO0D14410p [Zygosaccharomyces rouxii]
Length = 772
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 68/199 (34%), Positives = 110/199 (55%), Gaps = 10/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+S ++ K +M D G+H AY + P + S +D ++I+H
Sbjct: 15 LGGSNEVGRSSHMLQYKNKTVMLDAGVHPAYQGYASLPYYDEFDLS-----KVDILLISH 69
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLV---DRRGEVEQ-FTSD 123
FH+DH +LP+ + + G ++MT+PT+A+ +L D+ +V G+ E +T +
Sbjct: 70 FHVDHAASLPYVMQKTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGNSATGKDENLYTDE 129
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
+AE ++ +D TV V ++ AY+AGHVLGAAMF ++ +++TGDY+ D
Sbjct: 130 DLAESFDRIETIDYHSTVDVG-GIKFTAYHAGHVLGAAMFQIEIAGLRVLFTGDYSRELD 188
Query: 184 RHLGAARIDRLQLDLLITE 202
RHL +A I D+LI E
Sbjct: 189 RHLNSAEIPPFPSDVLIVE 207
>gi|367034742|ref|XP_003666653.1| hypothetical protein MYCTH_2311535 [Myceliophthora thermophila ATCC
42464]
gi|347013926|gb|AEO61408.1| hypothetical protein MYCTH_2311535 [Myceliophthora thermophila ATCC
42464]
Length = 879
Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/202 (34%), Positives = 112/202 (55%), Gaps = 13/202 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P F DF+ + +D ++
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFD------DFDLSTVDVLL 81
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT--- 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q
Sbjct: 82 ISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQLVYTE 141
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH+ + A+D T ++I Y AGHVLGAAMF ++ +++TGDY+
Sbjct: 142 QDHL-NTFPMIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNILFTGDYSRE 199
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 200 QDRHLVSAEVPKGVKIDVLITE 221
>gi|395332776|gb|EJF65154.1| Metallo-hydrolase/oxidoreductase [Dichomitus squalens LYAD-421 SS1]
Length = 809
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 107/199 (53%), Gaps = 10/199 (5%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC V+ G+ I+ D G+H AY+ P + S +D ++IT
Sbjct: 11 LLGAGQEVGRSCCVIQYRGRTIVCDAGVHPAYSGIASLPFIDDLDWST-----VDVLLIT 65
Query: 67 HFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
HFHLDH AL + E + G +YMT+PT+AL M++D+ ++ + FT
Sbjct: 66 HFHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKALHKFMMQDFVRMSTSSADTL--FTPL 123
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
++ + +I V Q + + Y+AGHVLGA MF + ++YTGDY+ D
Sbjct: 124 EMSMSLASIIPVSAHQVITPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTGDYSREED 183
Query: 184 RHLGAARIDRLQLDLLITE 202
RHL A I + D+LI E
Sbjct: 184 RHLVKAEIPPIHPDVLIVE 202
>gi|341038970|gb|EGS23962.1| hypothetical protein CTHT_0006720 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 894
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 70/202 (34%), Positives = 114/202 (56%), Gaps = 13/202 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P F DF+ + +D ++
Sbjct: 27 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFD------DFDLSQVDVLL 80
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT--- 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q
Sbjct: 81 ISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQLVYTE 140
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH+ + A+D T + ++I Y AGHVLGAAMF ++ +++TGDY+
Sbjct: 141 QDHL-NTFPMIEAIDYYTTHTISS-IRITPYPAGHVLGAAMFLIEIAGLNILFTGDYSRE 198
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A++ + +++D+LITE
Sbjct: 199 QDRHLVSAQVPKGVKIDVLITE 220
>gi|452825586|gb|EME32582.1| RNA-metabolising metallo-beta-lactamase family protein [Galdieria
sulphuraria]
Length = 370
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 101/182 (55%), Gaps = 12/182 (6%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
M DCG+H +Y D R+YP+F + + ITH H DH+GALP TE GY+GP
Sbjct: 1 MLDCGLHPSYQDDRRYPNFGLAFSY----GPLKAVFITHCHADHVGALPILTERWGYDGP 56
Query: 89 IYMTYPTRALAPIMLEDY------RKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQ 142
IYM+ PTR L+ +LE+ D +T + C+ KV ++ Q++
Sbjct: 57 IYMSEPTRKLSYYILEECVGSWGGDDEWTDSSRSEWSYTQREVESCLTKVTIMEPGQSIS 116
Query: 143 VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQL--DLLI 200
V +++Q+ ++ AGHVLGA MF V + ++YTGD+ P HL AR+D + D+++
Sbjct: 117 VGENVQVHSWMAGHVLGAYMFSIVVDNHRILYTGDFTSCPTFHLPPARVDDIPYPPDVIL 176
Query: 201 TE 202
+E
Sbjct: 177 SE 178
>gi|409080187|gb|EKM80547.1| hypothetical protein AGABI1DRAFT_70926 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 841
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/214 (35%), Positives = 113/214 (52%), Gaps = 22/214 (10%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
+ +LGAGQEVG+SC V+ GK ++ D G+H A+N P + S ++D
Sbjct: 7 LSVTMLGAGQEVGRSCCVLQYRGKTLVCDTGVHPAHNGMASLPFIDDLDWS-----SVDA 61
Query: 63 IVITHFHLDHIGALPFFTEICGYN---GPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
I+ITHFHLDH AL + TE + G +YMT+PT+AL M++D+ + RR +
Sbjct: 62 ILITHFHLDHAAALTYITEKTNFKDGKGKVYMTHPTKALHKFMMQDFVRT---RRANFVK 118
Query: 120 -----------FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVG 168
F+ + + +IAV Q + V + Y+AGHVLGA MF +
Sbjct: 119 CPHSSASSDALFSPLDMQMSLASIIAVSAHQLITVCPGVSFIPYHAGHVLGACMFLIDIA 178
Query: 169 DSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
++YTGDY+ DRHL A + ++ D+L+ E
Sbjct: 179 GLKILYTGDYSREEDRHLIKAELPPIRPDVLVVE 212
>gi|392593709|gb|EIW83034.1| Metallo-hydrolase oxidoreductase [Coniophora puteana RWD-64-598
SS2]
Length = 770
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/199 (36%), Positives = 107/199 (53%), Gaps = 10/199 (5%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC V+ G I+ D G+H AY+ P + S +D +++T
Sbjct: 11 LLGAGQEVGRSCCVLQYRGITIVCDAGIHPAYSGMASLPFVDELDWST-----VDALLVT 65
Query: 67 HFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
HFHLDH AL + E + G +YMT+PT+AL M++DY V + FT
Sbjct: 66 HFHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKALHKFMMQDY--VRMSSSSSDALFTPL 123
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
++ + +IA+ Q + + Y+AGHVLGA MF + ++YTGDY+ D
Sbjct: 124 DMSMSLSSIIAISAHQLITPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTGDYSREED 183
Query: 184 RHLGAARIDRLQLDLLITE 202
RHL A + ++ D+LI E
Sbjct: 184 RHLVKAEVPPVRPDVLIVE 202
>gi|294658126|ref|XP_460457.2| DEHA2F02134p [Debaryomyces hansenii CBS767]
gi|218511903|sp|Q6BMW3.2|YSH1_DEBHA RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|202952895|emb|CAG88764.2| DEHA2F02134p [Debaryomyces hansenii CBS767]
Length = 815
Score = 127 bits (320), Expect = 2e-27, Method: Composition-based stats.
Identities = 67/210 (31%), Positives = 111/210 (52%), Gaps = 21/210 (10%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM D G+H P + S +D ++++H
Sbjct: 19 LGGCNEVGRSCHIIEYKNKVIMLDAGVHPGLQGLSSLPFYDEYDLS-----KVDILLVSH 73
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLV-----DRR-------- 114
FHLDH +LP+ + +NG ++MT+ T+A+ +L D+ KV D R
Sbjct: 74 FHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVKVTSIGGGSDARLNNSDPNA 133
Query: 115 --GEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAM 172
G +T D + ++ +D T+++D ++ AY+AGHVLGA M++ ++G +
Sbjct: 134 NTGSSNLYTDDDLMRSFDRIETIDYHSTIELD-GIRFTAYHAGHVLGACMYFIEIGGLKV 192
Query: 173 VYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
++TGDY+ DRHL A + ++ D+LITE
Sbjct: 193 LFTGDYSSEEDRHLQVAEVPPIKPDILITE 222
>gi|393245131|gb|EJD52642.1| Metallo-hydrolase/oxidoreductase [Auricularia delicata TFB-10046
SS5]
Length = 751
Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 70/203 (34%), Positives = 110/203 (54%), Gaps = 10/203 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
+ +LGAGQEVG+SC V+ G ++ D G+H AY+ P + S +D
Sbjct: 7 LSITLLGAGQEVGRSCCVLKYRGLTVVCDAGVHPAYSGMASLPFVDELDWST-----VDA 61
Query: 63 IVITHFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
++ITHFHLDH +L + E + NG +YMT+PT+A+ M++D+ ++ +
Sbjct: 62 LLITHFHLDHAASLTYIMEKTNFRDGNGKVYMTHPTKAVYKFMMQDFVRMSAASTDAL-- 119
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
FT ++ + +I + Q + L Y+AGHVLGA MF+ + ++YTGDY+
Sbjct: 120 FTPLDLSMSLASIIPISAHQVISPCPGLTFTPYHAGHVLGACMFHIDIAGVKVLYTGDYS 179
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
DRHL A I ++ D+LI E
Sbjct: 180 REEDRHLVKAEIPPVRPDVLIVE 202
>gi|322710530|gb|EFZ02104.1| cleavage and polyadenylation specifity factor [Metarhizium
anisopliae ARSEF 23]
Length = 831
Score = 126 bits (317), Expect = 4e-27, Method: Composition-based stats.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 11/201 (5%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P + DF+ + +D ++
Sbjct: 30 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYD------DFDLSTVDVLL 83
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTS 122
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q +T
Sbjct: 84 ISHFHVDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNSTTQPVYTE 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
++ A+D T ++I Y AGHVLGAAMF ++ + +TGDY+
Sbjct: 144 QDHLNTFSQIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQ 202
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 203 DRHLVSAEVPKDVKIDVLITE 223
>gi|320593246|gb|EFX05655.1| cleavage and polyadenylation specificity factor subunit [Grosmannia
clavigera kw1407]
Length = 857
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 116/202 (57%), Gaps = 13/202 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P F DF+ + +D ++
Sbjct: 27 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLASLPFFD------DFDLSTVDVLL 80
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ---FT 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q
Sbjct: 81 ISHFHVDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTE 140
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH++ +++ A+D T V ++I Y AGHVLGAAMF ++ +++TGDY+
Sbjct: 141 QDHLS-TFRQIEAIDYHTTHTVS-SIRITPYPAGHVLGAAMFLIEIAGLKIMFTGDYSRE 198
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 199 LDRHLVSATVPKGVKVDVLITE 220
>gi|312080023|ref|XP_003142424.1| cpsf3-prov protein [Loa loa]
Length = 715
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 116/201 (57%), Gaps = 16/201 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMH--MAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
LG+GQEVG+SC +T GK+I+ DCG+H M+ D + DF C+ +D +++
Sbjct: 18 LGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFV----DCE---ELDLLLV 70
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ----FT 121
THFHLDH GALP+ E + G +MT+ T+A+ + + DY K V + G +
Sbjct: 71 THFHLDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSIGDYLK--VSKYGGSSDNRMLYN 128
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+ + + M+K+ +D + +V+ ++ + AGHVLGA MF ++ ++YTGD++
Sbjct: 129 EEDLEKSMEKIEVIDFHEQKEVNG-IKFWCHVAGHVLGACMFMIEIAGVRILYTGDFSRL 187
Query: 182 PDRHLGAARIDRLQLDLLITE 202
DRHL AA + + D+LI E
Sbjct: 188 EDRHLCAAELPTVSPDVLICE 208
>gi|393912283|gb|EJD76667.1| hypothetical protein LOAG_16429 [Loa loa]
Length = 247
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 115/201 (57%), Gaps = 16/201 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMH--MAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
LG+GQEVG+SC +T GK+I+ DCG+H M+ D + DF + +D +++
Sbjct: 18 LGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFVDCEE-------LDLLLV 70
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ----FT 121
THFHLDH GALP+ E + G +MT+ T+A+ + + DY K V + G +
Sbjct: 71 THFHLDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSIGDYLK--VSKYGGSSDNRMLYN 128
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+ + + M+K+ +D + +V+ ++ + AGHVLGA MF ++ ++YTGD++
Sbjct: 129 EEDLEKSMEKIEVIDFHEQKEVNG-IKFWCHVAGHVLGACMFMIEIAGVRILYTGDFSRL 187
Query: 182 PDRHLGAARIDRLQLDLLITE 202
DRHL AA + + D+LI E
Sbjct: 188 EDRHLCAAELPTVSPDVLICE 208
>gi|170587204|ref|XP_001898368.1| cpsf3-prov protein [Brugia malayi]
gi|158594194|gb|EDP32780.1| cpsf3-prov protein, putative [Brugia malayi]
Length = 700
Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 116/201 (57%), Gaps = 16/201 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMH--MAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
LG+GQEVG+SC +T GK+I+ DCG+H M+ D + DF C+ +D +++
Sbjct: 18 LGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFV----DCE---ELDLLLV 70
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ----FT 121
THFHLDH GALP+ E + G +MT+ T+A+ + + DY K V + G +
Sbjct: 71 THFHLDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSIGDYLK--VSKYGGSSDNRMLYN 128
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+ + + M+K+ +D + +V+ ++ + AGHVLGA MF ++ ++YTGD++
Sbjct: 129 EEDLEKSMEKIEVIDFHEQKEVN-GIKFWCHVAGHVLGACMFMIEIAGVRILYTGDFSRL 187
Query: 182 PDRHLGAARIDRLQLDLLITE 202
DRHL AA + + D+LI E
Sbjct: 188 EDRHLCAAELPTVSPDVLICE 208
>gi|302927041|ref|XP_003054415.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735356|gb|EEU48702.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 827
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 114/202 (56%), Gaps = 13/202 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P + DF+ + +D ++
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYD------DFDLSTVDVLL 81
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ---FT 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q
Sbjct: 82 ISHFHIDHAASLPYVLARTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPIYTE 141
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH++ ++ A+D T ++I Y AGHVLGAAMF ++G + +TGDY+
Sbjct: 142 QDHLS-TFPQIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIGGLNIFFTGDYSRE 199
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 200 QDRHLVSAEVPKGVKIDVLITE 221
>gi|296418744|ref|XP_002838985.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634979|emb|CAZ83176.1| unnamed protein product [Tuber melanosporum]
Length = 783
Score = 126 bits (316), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 111/198 (56%), Gaps = 8/198 (4%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
L LG G EVG+SC ++ GK +M D G+H AY P + + S +D ++I
Sbjct: 25 LCLGGGNEVGRSCHILKYKGKTVMLDAGVHPAYEGLAGLPFYDQFDLST-----VDVLLI 79
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT-SDH 124
+HFHLDH +LP+ + G ++MT+PT+A+ +++D +V +T SDH
Sbjct: 80 SHFHLDHAASLPYVMTKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNVHNSPDNLYTESDH 139
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
++ ++ A+D T+ + I Y+AGHVLG AMF+ ++ +++TGDY+ DR
Sbjct: 140 LS-SYSRIEAIDYHTTL-THAGISITPYHAGHVLGGAMFFIEIAGLKILFTGDYSREDDR 197
Query: 185 HLGAARIDRLQLDLLITE 202
HL +A + + DLLI E
Sbjct: 198 HLVSAEVPHQKPDLLICE 215
>gi|402084516|gb|EJT79534.1| endoribonuclease YSH1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 868
Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 111/199 (55%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D G H AY+ P F DF+ + +D ++I+
Sbjct: 30 LGGGNEVGRSCHIIQYRGKTVMLDAGQHPAYDGLAALPFFD------DFDLSTVDVLLIS 83
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDH 124
HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q +T
Sbjct: 84 HFHIDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLMQDSVRVGNTSSNPTSQPVYTEQD 143
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
++ A+D T + ++I Y AGHVLGAAMF ++ + +TGDY+ DR
Sbjct: 144 HLNTFPQIEAIDYYTTHTISS-IRITPYPAGHVLGAAMFLIEIAGLNVFFTGDYSREQDR 202
Query: 185 HLGAARIDR-LQLDLLITE 202
HL +A + R +Q+D+LITE
Sbjct: 203 HLVSAEVPRGVQIDVLITE 221
>gi|440638117|gb|ELR08036.1| hypothetical protein GMDG_02874 [Geomyces destructans 20631-21]
Length = 831
Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats.
Identities = 70/203 (34%), Positives = 115/203 (56%), Gaps = 14/203 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D GMH A++ P + DF+ + +D ++
Sbjct: 27 LCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAFDGLSALPFYD------DFDLSTVDVLL 80
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT--- 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V + + T
Sbjct: 81 ISHFHIDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVSSNSSSTEQSSTPYT 140
Query: 122 -SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+DH A + A+D T ++I AGHVLGAAMF + +++TGDY++
Sbjct: 141 EADH-ASTFPMIEAIDY-HTTHTISSIRITPLPAGHVLGAAMFLISISGLTILFTGDYSI 198
Query: 181 TPDRHLGAARID-RLQLDLLITE 202
PDRHL +A + +++D+LITE
Sbjct: 199 EPDRHLISASVPANVKVDVLITE 221
>gi|406866779|gb|EKD19818.1| metallo-beta-lactamase superfamily protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 823
Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 114/202 (56%), Gaps = 13/202 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H Y P + DF+ + +D ++
Sbjct: 29 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHAGYEGLASLPFYD------DFDLSTVDVLL 82
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---LVDRRGEVEQFT 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V D +G+
Sbjct: 83 ISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSIRVGGASSDSKGQPVYTE 142
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+DH++ + A+D T ++I Y AGHVLGAAMF ++ + +TGDY+
Sbjct: 143 ADHLS-TFPMIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSRE 200
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 201 DDRHLVSAEVPKGVKIDVLITE 222
>gi|310796189|gb|EFQ31650.1| metallo-beta-lactamase superfamily protein [Glomerella graminicola
M1.001]
Length = 855
Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 113/202 (55%), Gaps = 13/202 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P F DF+ + +D ++
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFD------DFDLSTVDVLL 81
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ---FT 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q
Sbjct: 82 ISHFHVDHAASLPYVLSKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTE 141
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+DH+ ++ A+D T ++I Y AGHVLGAAMF ++ + +TGDY+
Sbjct: 142 ADHL-NTFPQIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSRE 199
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 200 QDRHLVSAEVPKGVKIDVLITE 221
>gi|429862463|gb|ELA37111.1| cleavage and polyadenylation specifity 73 kda [Colletotrichum
gloeosporioides Nara gc5]
Length = 831
Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 113/202 (55%), Gaps = 13/202 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P F DF+ + +D ++
Sbjct: 24 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFD------DFDLSTVDVLL 77
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ---FT 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q
Sbjct: 78 ISHFHVDHAASLPYVLSKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTE 137
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+DH+ ++ A+D T ++I Y AGHVLGAAMF ++ + +TGDY+
Sbjct: 138 ADHL-NTFPQIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSRE 195
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 196 QDRHLVSAEVPKGVKIDVLITE 217
>gi|380494427|emb|CCF33158.1| endoribonuclease YSH1 [Colletotrichum higginsianum]
Length = 846
Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 113/202 (55%), Gaps = 13/202 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P F DF+ + +D ++
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAGLPFFD------DFDLSTVDVLL 81
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ---FT 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q
Sbjct: 82 ISHFHVDHAASLPYVLSKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTE 141
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+DH+ ++ A+D T ++I Y AGHVLGAAMF ++ + +TGDY+
Sbjct: 142 ADHL-NTFPQIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSRE 199
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 200 QDRHLVSAEVPKGVKIDVLITE 221
>gi|389634325|ref|XP_003714815.1| endoribonuclease YSH1 [Magnaporthe oryzae 70-15]
gi|351647148|gb|EHA55008.1| endoribonuclease YSH1 [Magnaporthe oryzae 70-15]
gi|440467574|gb|ELQ36790.1| endoribonuclease YSH1 [Magnaporthe oryzae Y34]
gi|440483131|gb|ELQ63565.1| endoribonuclease YSH1 [Magnaporthe oryzae P131]
Length = 829
Score = 125 bits (314), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 111/199 (55%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D G H AY+ P F DF+ + +D ++I+
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFD------DFDLSTVDVLLIS 83
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDH 124
HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q +T
Sbjct: 84 HFHVDHAASLPYVLSKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTSQPVYTEQD 143
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
++ A+D T + ++I Y AGHVLGAAMF ++ + +TGDY+ DR
Sbjct: 144 HLNTFPQIEAIDYYTTHTISS-IRITPYPAGHVLGAAMFLIEIAGMNIFFTGDYSREQDR 202
Query: 185 HLGAARIDR-LQLDLLITE 202
HL +A + R +++D+LITE
Sbjct: 203 HLVSAEVPRGVKIDVLITE 221
>gi|302679538|ref|XP_003029451.1| hypothetical protein SCHCODRAFT_59058 [Schizophyllum commune H4-8]
gi|300103141|gb|EFI94548.1| hypothetical protein SCHCODRAFT_59058 [Schizophyllum commune H4-8]
Length = 786
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 106/199 (53%), Gaps = 10/199 (5%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC V+ G+ I+ D G+H A+ P + S +D I+IT
Sbjct: 11 MLGAGQEVGRSCCVLQYRGRTIVCDTGIHPAHTGMASLPFIDDLDWST-----VDAILIT 65
Query: 67 HFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
HFHLDH +L + TE + G IYMT+PT+AL M++D+ V F+
Sbjct: 66 HFHLDHAASLTYITEKTNFRDGKGKIYMTHPTKALHKFMMQDF--VRTGSSSSDALFSPL 123
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
I+ + +I V Q + + Y+AGHVLGA MF + ++YTGDY+ D
Sbjct: 124 DISMSLASIIPVSAHQLITPCPGVSFTPYHAGHVLGACMFLIDMAGLRILYTGDYSREED 183
Query: 184 RHLGAARIDRLQLDLLITE 202
RHL A + ++ D+LI E
Sbjct: 184 RHLVKAELPPIRPDVLIVE 202
>gi|390602470|gb|EIN11863.1| Metallo-hydrolase/oxidoreductase, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 721
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 111/205 (54%), Gaps = 12/205 (5%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
+++ CL GAGQEVG+SC V+ GK ++ D G+H AY P + S +
Sbjct: 7 LSVTCL--GAGQEVGRSCCVLQYRGKTVVCDAGVHPAYTGMASLPFIDELDWST-----V 59
Query: 61 DCIVITHFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEV 117
D ++ITHFHLDH +L + E + +G +YMT+PT+A+ M++D+ ++ +
Sbjct: 60 DVLLITHFHLDHAASLTYIMEKTNFRDGHGKVYMTHPTKAVYKFMMQDFVRMSSSSSDAL 119
Query: 118 EQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
F+ ++ + +I V Q + + Y+AGHVLGA MF + ++YTGD
Sbjct: 120 --FSPLDLSMSLSSIIPVSAHQLITPFPGISFTPYHAGHVLGACMFLIDIAGLKILYTGD 177
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
Y+ DRHL A + ++ D+LI E
Sbjct: 178 YSREEDRHLVKAELPPIRPDVLIAE 202
>gi|321264788|ref|XP_003197111.1| cleavage and polyadenylation specificity factor [Cryptococcus
gattii WM276]
gi|317463589|gb|ADV25324.1| Cleavage and polyadenylation specificity factor, putative
[Cryptococcus gattii WM276]
Length = 778
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 11/206 (5%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
++ +LGAGQEVG+SC V+ GK+I+ D G+H A P + S +D
Sbjct: 28 SLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIGALPFIDELDWST-----VD 82
Query: 62 CIVITHFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVE 118
++ITHFH+DH ALP+ E + NG +YMT+ T+A+ + + D + L D+ +
Sbjct: 83 ALLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVR-LNDQNPDTS 141
Query: 119 QFTSDH--IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
D + + IAVD Q + + L+ Y+AGHVLGA+MF ++ ++YTG
Sbjct: 142 GRLYDEADVQSSWQSTIAVDYHQDIVIAGGLRFTPYHAGHVLGASMFLIEIAGLKILYTG 201
Query: 177 DYNMTPDRHLGAARIDRLQLDLLITE 202
DY+ DRHL A I ++ D++I E
Sbjct: 202 DYSREEDRHLVMAEIPPVKPDVMICE 227
>gi|367054168|ref|XP_003657462.1| hypothetical protein THITE_2123200 [Thielavia terrestris NRRL 8126]
gi|347004728|gb|AEO71126.1| hypothetical protein THITE_2123200 [Thielavia terrestris NRRL 8126]
Length = 859
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 112/202 (55%), Gaps = 13/202 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P F DF+ + +D ++
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFD------DFDLSTVDVLL 81
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT--- 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q
Sbjct: 82 ISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQLVYTE 141
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH+ + A+D T ++I Y AGHVLGAAMF ++ +++TGDY+
Sbjct: 142 QDHL-NTFPMIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNILFTGDYSRE 199
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 200 QDRHLVSAEVPKGVKIDVLITE 221
>gi|58270576|ref|XP_572444.1| hypothetical protein CNH02710 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134118056|ref|XP_772409.1| hypothetical protein CNBL2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819805|sp|P0CM89.1|YSH1_CRYNB RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|338819806|sp|P0CM88.1|YSH1_CRYNJ RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
gi|50255022|gb|EAL17762.1| hypothetical protein CNBL2750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228702|gb|AAW45137.1| hypothetical protein CNH02710 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 773
Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 11/206 (5%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
++ +LGAGQEVG+SC V+ GK+I+ D G+H A P + S +D
Sbjct: 28 SLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIGALPFIDELDWST-----VD 82
Query: 62 CIVITHFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVE 118
++ITHFH+DH ALP+ E + NG +YMT+ T+A+ + + D + L D+ +
Sbjct: 83 AMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVR-LNDQNPDTS 141
Query: 119 QFTSDH--IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
D + + IAVD Q + + L+ Y+AGHVLGA+MF ++ ++YTG
Sbjct: 142 GRLYDEADVQSSWQSTIAVDYHQDIVIAGGLRFTPYHAGHVLGASMFLIEIAGLKILYTG 201
Query: 177 DYNMTPDRHLGAARIDRLQLDLLITE 202
DY+ DRHL A I ++ D++I E
Sbjct: 202 DYSREEDRHLVMAEIPPVKPDVMICE 227
>gi|296109857|ref|YP_003616806.1| KH-domain/beta-lactamase-domain protein [methanocaldococcus
infernus ME]
gi|295434671|gb|ADG13842.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus
infernus ME]
Length = 631
Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats.
Identities = 69/197 (35%), Positives = 110/197 (55%), Gaps = 8/197 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC+++ +++ DCG+++AY + + YP F S + +D ++ITH
Sbjct: 182 LGGAREVGRSCLLLQTPDTKVLLDCGVNIAY-EEKMYPQFDAPEFSIE---DLDAVIITH 237
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G LP GY+GP+Y T PTR L ++ +DY + ++ G+ F+S I E
Sbjct: 238 AHLDHCGFLPGLFRY-GYDGPVYCTRPTRDLMTLLQKDYLDI-AEKEGKPVPFSSKEIKE 295
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
C+K VI +D T + +++ + AGHVLG+A+ + G+ + YTGD R
Sbjct: 296 CVKHVIPLDYGVTTDISPSIKLTLHNAGHVLGSAIAHLHFGEGLYNLAYTGDLKFDTSRL 355
Query: 186 LGAARIDRLQLDLLITE 202
L A +L+ LI E
Sbjct: 356 LEPAVCQFPRLEALIIE 372
>gi|116200035|ref|XP_001225829.1| hypothetical protein CHGG_08173 [Chaetomium globosum CBS 148.51]
gi|88179452|gb|EAQ86920.1| hypothetical protein CHGG_08173 [Chaetomium globosum CBS 148.51]
Length = 854
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 112/202 (55%), Gaps = 13/202 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P F DF+ + +D ++
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFD------DFDLSTVDVLL 81
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT--- 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q
Sbjct: 82 ISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQLVYTE 141
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH+ + A+D T ++I Y AGHVLGAAMF ++ +++TGDY+
Sbjct: 142 QDHL-NTFPMIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNILFTGDYSRE 199
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 200 QDRHLVSAEVPKGVRVDVLITE 221
>gi|405124298|gb|AFR99060.1| endoribonuclease YSH1 [Cryptococcus neoformans var. grubii H99]
Length = 770
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 11/206 (5%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
++ +LGAGQEVG+SC V+ GK+I+ D G+H A P + S +D
Sbjct: 28 SLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIGALPFIDELDWST-----VD 82
Query: 62 CIVITHFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVE 118
++ITHFH+DH ALP+ E + NG +YMT+ T+A+ + + D + L D+ +
Sbjct: 83 AMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVR-LNDQNPDTS 141
Query: 119 QFTSDH--IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
D + + IAVD Q + + L+ Y+AGHVLGA+MF ++ ++YTG
Sbjct: 142 GRLYDEADVQSSWQSTIAVDYHQDIVIAGGLRFTPYHAGHVLGASMFLIEIAGLMILYTG 201
Query: 177 DYNMTPDRHLGAARIDRLQLDLLITE 202
DY+ DRHL A I ++ D++I E
Sbjct: 202 DYSREEDRHLVMAEIPPVKPDVMICE 227
>gi|297739593|emb|CBI29775.3| unnamed protein product [Vitis vinifera]
Length = 184
Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 95/163 (58%), Gaps = 11/163 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK I+ DCG+H AY+ P+F+ I S ID +++TH
Sbjct: 29 LGAGNEVGRSCVYMSYKGKTILIDCGIHRAYSGMAALPNFNEIDPS-----TIDVLLVTH 83
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH--I 125
FHLDH +LP+F E +NG ++MT+ +A+ ++L DY KV + VE D I
Sbjct: 84 FHLDHAASLPYFLEKTTFNGQVFMTHAMKAIYKLLLSDYVKVSI---VSVEDMLYDEQDI 140
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVG 168
M K+ +D QT++V+ +Q Y GHVL AAMF +
Sbjct: 141 LRSMDKIEVIDFHQTLEVNG-IQFWCYTTGHVLSAAMFMVDIA 182
>gi|226295077|gb|EEH50497.1| endoribonuclease ysh1 [Paracoccidioides brasiliensis Pb18]
Length = 888
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 68/202 (33%), Positives = 115/202 (56%), Gaps = 16/202 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D GMH A P F DF+ +++D ++I+
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFD------DFDLSSVDILLIS 83
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVL-----VDRRGEVEQFT 121
HFHLDH LP+ + G ++MT+ T+A+ +++D +V D+R + +T
Sbjct: 84 HFHLDHSAGLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTTL--YT 141
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+ + ++ A+D T ++ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 142 EEEHLSTLPQIEAIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSRE 200
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 201 EDRHLISAEVPKGIKIDVLITE 222
>gi|225677757|gb|EEH16041.1| endoribonuclease ysh1 [Paracoccidioides brasiliensis Pb03]
Length = 888
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 68/202 (33%), Positives = 115/202 (56%), Gaps = 16/202 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D GMH A P F DF+ +++D ++I+
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFD------DFDLSSVDILLIS 83
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVL-----VDRRGEVEQFT 121
HFHLDH LP+ + G ++MT+ T+A+ +++D +V D+R + +T
Sbjct: 84 HFHLDHSAGLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTTL--YT 141
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+ + ++ A+D T ++ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 142 EEEHLSTLPQIEAIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSRE 200
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 201 EDRHLISAEVPKGIKIDVLITE 222
>gi|156064885|ref|XP_001598364.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154691312|gb|EDN91050.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 820
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 68/200 (34%), Positives = 113/200 (56%), Gaps = 13/200 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D GMH Y+ P + DF+ + +D ++I+
Sbjct: 29 LGGGNEVGRSCHIIQYKGKTVMLDAGMHAGYDGLAALPFYD------DFDLSTVDLLLIS 82
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV--LVDRRGEVEQFT-SD 123
HFH+DH +LP+ + G ++MT+PT+A+ ++ D +V G +T +D
Sbjct: 83 HFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIIDSVRVGGASSNGGSHSVYTEAD 142
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
H+ ++ A+D T +++ Y AGHVLGAAMF ++ + +TGDY+ D
Sbjct: 143 HLTT-FAQIEAIDY-HTTHTISSIRVTPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREDD 200
Query: 184 RHLGAARIDR-LQLDLLITE 202
RHL +A + + +++D+LITE
Sbjct: 201 RHLVSAEVPKGVKIDVLITE 220
>gi|333910182|ref|YP_004483915.1| KH-domain/beta-lactamase-domain-containing protein [Methanotorris
igneus Kol 5]
gi|333750771|gb|AEF95850.1| KH-domain/beta-lactamase-domain protein [Methanotorris igneus Kol
5]
Length = 635
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++C+ + R++ DCG+++A R YP F S + ID +VITH
Sbjct: 185 LGGAREVGRTCLYLQTPDSRVLIDCGINIAVEGDRAYPHFDAPEFSIE---EIDAVVITH 241
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P GY+GP+Y T PTR L ++ +DY + ++ G+ +T+ I
Sbjct: 242 AHLDHCGFVPGLFRY-GYDGPVYCTRPTRDLMTLLFKDYLDI-AEKEGKDVPYTAKDIKT 299
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
C+K I +D T + +++ + AGH+LG+A+ + +GD + YTGD R
Sbjct: 300 CVKHTIPIDYGVTTDITPTIKLTLHNAGHILGSAIAHCHIGDGQYNIAYTGDIKFEASRL 359
Query: 186 LGAARIDRLQLDLLITE 202
L A +L+ LI E
Sbjct: 360 LEPAVCQFPRLETLIIE 376
>gi|326482980|gb|EGE06990.1| endoribonuclease ysh1 [Trichophyton equinum CBS 127.97]
Length = 818
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 69/202 (34%), Positives = 117/202 (57%), Gaps = 16/202 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D GMH A + P F DF+ + +D ++I+
Sbjct: 29 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFD------DFDLSTVDILLIS 82
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS---- 122
HFHLDH G+LP+ + G ++MT+ T+A+ +++D +V + +Q TS
Sbjct: 83 HFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-SNTSSSSDQRTSLYNE 141
Query: 123 -DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH++ + + +D T ++ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 142 HDHLS-TLPIIETIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSRE 199
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D++ITE
Sbjct: 200 EDRHLISAEVPKGVKIDVMITE 221
>gi|315043764|ref|XP_003171258.1| endoribonuclease ysh1 [Arthroderma gypseum CBS 118893]
gi|311345047|gb|EFR04250.1| endoribonuclease ysh1 [Arthroderma gypseum CBS 118893]
Length = 853
Score = 124 bits (310), Expect = 3e-26, Method: Composition-based stats.
Identities = 69/202 (34%), Positives = 117/202 (57%), Gaps = 16/202 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D GMH A + P F DF+ + +D ++I+
Sbjct: 29 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFD------DFDLSTVDILLIS 82
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS---- 122
HFHLDH G+LP+ + G ++MT+ T+A+ +++D +V + +Q TS
Sbjct: 83 HFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-SNTSSSSDQRTSLYNE 141
Query: 123 -DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH++ + + +D T ++ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 142 HDHLS-TLPIIETIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSRE 199
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D++ITE
Sbjct: 200 EDRHLISAEVPKSVKIDVMITE 221
>gi|400600571|gb|EJP68245.1| metallo-beta-lactamase superfamily protein [Beauveria bassiana
ARSEF 2860]
Length = 866
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 112/201 (55%), Gaps = 11/201 (5%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P + DF+ + +D ++
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYD------DFDLSTVDVLL 81
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTS 122
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V + Q +T
Sbjct: 82 ISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSANQTTQPLYTE 141
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
++ A+D T ++I Y AGHVLGAAMF ++ + +TGDY+
Sbjct: 142 QDHLNTFPQIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQ 200
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 201 DRHLVSAEVPKGVKIDVLITE 221
>gi|322699261|gb|EFY91024.1| cleavage and polyadenylation specifity factor [Metarhizium acridum
CQMa 102]
Length = 829
Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 11/201 (5%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P + DF+ + +D ++
Sbjct: 30 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYD------DFDLSTVDVLL 83
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTS 122
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q +T
Sbjct: 84 ISHFHVDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNSTTQPVYTE 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
++ A+D T ++I Y AGHVLGAAMF ++ + +TGDY+
Sbjct: 144 QDHLNTFSQIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQ 202
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 203 DRHLVSAEVPKDVKIDVLITE 223
>gi|346972312|gb|EGY15764.1| endoribonuclease YSH1 [Verticillium dahliae VdLs.17]
Length = 837
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 113/202 (55%), Gaps = 13/202 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P F DF+ + +D ++
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFD------DFDLSTVDVLL 81
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ---FT 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q
Sbjct: 82 ISHFHVDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPSTQPVYTE 141
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+DH+ ++ A+D T ++I Y AGHVLGAAMF ++ + +TGDY+
Sbjct: 142 ADHM-NTFPQIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSRE 199
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 200 QDRHLVSAEVPKGVKIDVLITE 221
>gi|190346159|gb|EDK38177.2| hypothetical protein PGUG_02275 [Meyerozyma guilliermondii ATCC
6260]
Length = 770
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 111/208 (53%), Gaps = 19/208 (9%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM D G+H Y P + S +D ++I+H
Sbjct: 13 LGGCNEVGRSCHIIEYKNKVIMLDAGVHPGYAGLSSLPFYDEYDLS-----KVDILLISH 67
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLV-----DRR-------- 114
FHLDH +LP+ + +NG ++MT+ T+A+ +L D+ +V D R
Sbjct: 68 FHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVRVTSIGGGGDSRLNSGNETA 127
Query: 115 GEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVY 174
+T D + ++ +D T++V+ ++ AY+AGHVLGA M++ ++G +++
Sbjct: 128 TSSNLYTDDDLIRSFDRIETIDYHSTIEVE-GIRFTAYHAGHVLGACMYFVEIGGLKVLF 186
Query: 175 TGDYNMTPDRHLGAARIDRLQLDLLITE 202
TGDY+ DRHL A + ++ D+LITE
Sbjct: 187 TGDYSREEDRHLQVAEVPPMRPDILITE 214
>gi|146421308|ref|XP_001486604.1| hypothetical protein PGUG_02275 [Meyerozyma guilliermondii ATCC
6260]
Length = 770
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 111/208 (53%), Gaps = 19/208 (9%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM D G+H Y P + S +D ++I+H
Sbjct: 13 LGGCNEVGRSCHIIEYKNKVIMLDAGVHPGYAGLSSLPFYDEYDLS-----KVDILLISH 67
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLV-----DRR-------- 114
FHLDH +LP+ + +NG ++MT+ T+A+ +L D+ +V D R
Sbjct: 68 FHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVRVTSIGGGGDSRLNSGNETA 127
Query: 115 GEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVY 174
+T D + ++ +D T++V+ ++ AY+AGHVLGA M++ ++G +++
Sbjct: 128 TSSNLYTDDDLIRSFDRIETIDYHSTIEVE-GIRFTAYHAGHVLGACMYFVEIGGLKVLF 186
Query: 175 TGDYNMTPDRHLGAARIDRLQLDLLITE 202
TGDY+ DRHL A + ++ D+LITE
Sbjct: 187 TGDYSREEDRHLQVAEVPPMRPDILITE 214
>gi|320163324|gb|EFW40223.1| CPSF3 protein [Capsaspora owczarzaki ATCC 30864]
Length = 802
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 104/195 (53%), Gaps = 11/195 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC V+ GK IMFDCG+H AY+ P F D +ID +++TH
Sbjct: 47 LGAGQEVGRSCFVLQFKGKTIMFDCGLHPAYSGQAALPFFDSFDPGLD---SIDVLLVTH 103
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
+P+ + G ++MT+PT+A+ M+ D+ +V E+ F I
Sbjct: 104 ------AGVPYIMTKTNFKGRVFMTHPTKAIYKWMVADFIRVSNVSADEM-LFNERDIDN 156
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M ++ +D Q +V+ ++ Y AGHVLGA MF ++ ++YTGDY+ DRHL
Sbjct: 157 TMARIETIDYHQEKEVNG-IKFWCYNAGHVLGACMFMVEIAGVKLLYTGDYSRHEDRHLM 215
Query: 188 AARIDRLQLDLLITE 202
A I + D+L E
Sbjct: 216 PAEIPTIAPDVLCVE 230
>gi|408390480|gb|EKJ69876.1| hypothetical protein FPSE_09963 [Fusarium pseudograminearum CS3096]
Length = 833
Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 11/201 (5%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P + DF+ + +D ++
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYD------DFDLSTVDVLL 81
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTS 122
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q +T
Sbjct: 82 ISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQPVYTE 141
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
++ A+D T ++I Y AGHVLGAAMF ++ + +TGDY+
Sbjct: 142 QDHLNTFPQIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQ 200
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 201 DRHLVSAEVPKGVKIDVLITE 221
>gi|442570104|sp|Q4IPN9.2|YSH1_GIBZE RecName: Full=Endoribonuclease YSH1; AltName: Full=mRNA
3'-end-processing protein YSH1
Length = 833
Score = 123 bits (308), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 11/201 (5%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P + DF+ + +D ++
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYD------DFDLSTVDVLL 81
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTS 122
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q +T
Sbjct: 82 ISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQPVYTE 141
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
++ A+D T ++I Y AGHVLGAAMF ++ + +TGDY+
Sbjct: 142 QDHLNTFPQIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQ 200
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 201 DRHLVSAEVPKGVKIDVLITE 221
>gi|403222958|dbj|BAM41089.1| cleavage and polyadenylation specificty factor subunit [Theileria
orientalis strain Shintoku]
Length = 700
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 69/222 (31%), Positives = 115/222 (51%), Gaps = 32/222 (14%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
VLGAG EVG+SCV +MFDCG+H A + P F + + ++ ++T
Sbjct: 17 VLGAGCEVGRSCVYAERGNSCVMFDCGLHPALSGVGALPVFEAVDIT-----KVEVCLVT 71
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV--------------LVD 112
HFHLDH GA+P+ + G I+MT T+A+ ++ DY ++ ++
Sbjct: 72 HFHLDHCGAIPYLLSKTKFRGRIFMTSATKAICHLLWTDYARMEQLHSVKKIFDQPDALN 131
Query: 113 RRGEVEQ------------FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGA 160
G+ E +T D + + K+ +D + + V+ ++++ Y AGHVLGA
Sbjct: 132 DEGQNEDTEMDELVCGSGLYTFDDVEFALDKIETIDFHEELTVN-NIKVSCYRAGHVLGA 190
Query: 161 AMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
MF ++ ++YTGDY++ D+HL +A I + + LLI+E
Sbjct: 191 CMFLVEIDGVRILYTGDYSVEKDKHLPSAEIPLINVHLLISE 232
>gi|327356883|gb|EGE85740.1| endoribonuclease ysh1 [Ajellomyces dermatitidis ATCC 18188]
Length = 887
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 69/202 (34%), Positives = 116/202 (57%), Gaps = 16/202 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D GMH A P F DF+ + +D ++I+
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFD------DFDLSTVDILLIS 83
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS---- 122
HFHLDH +LP+ + G ++MT+ T+A+ +++D +V + +Q T+
Sbjct: 84 HFHLDHSASLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-SNTSSSSDQRTTLYTE 142
Query: 123 -DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH++ + ++ A+D T ++ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 143 QDHLS-TLSQIEAIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSRE 200
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + +++D+LITE
Sbjct: 201 EDRHLISAEAPKGIKIDVLITE 222
>gi|239612611|gb|EEQ89598.1| endoribonuclease ysh1 [Ajellomyces dermatitidis ER-3]
Length = 904
Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats.
Identities = 69/202 (34%), Positives = 116/202 (57%), Gaps = 16/202 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D GMH A P F DF+ + +D ++I+
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFD------DFDLSTVDILLIS 83
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS---- 122
HFHLDH +LP+ + G ++MT+ T+A+ +++D +V + +Q T+
Sbjct: 84 HFHLDHSASLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-SNTSSSSDQRTTLYTE 142
Query: 123 -DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH++ + ++ A+D T ++ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 143 QDHLS-TLSQIEAIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSRE 200
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + +++D+LITE
Sbjct: 201 EDRHLISAEAPKGIKIDVLITE 222
>gi|325090760|gb|EGC44070.1| endoribonuclease ysh1 [Ajellomyces capsulatus H88]
Length = 893
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 69/202 (34%), Positives = 117/202 (57%), Gaps = 16/202 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D GMH A + P F DF+ + +D ++I+
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFD------DFDLSTVDILLIS 83
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS---- 122
HFHLDH +LP+ + G ++MT+ T+A+ +++D +V + +Q T+
Sbjct: 84 HFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRV-SNTSSSSDQRTTLYTE 142
Query: 123 -DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH++ + + A+D T ++ +++I + AGHVLGAAMF + +++TGDY+
Sbjct: 143 QDHLS-TLSHIEAIDFNTTHTIN-NIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSRE 200
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + +++D+LITE
Sbjct: 201 EDRHLISAEAPKGVKVDVLITE 222
>gi|296803464|ref|XP_002842585.1| endoribonuclease ysh1 [Arthroderma otae CBS 113480]
gi|238838904|gb|EEQ28566.1| endoribonuclease ysh1 [Arthroderma otae CBS 113480]
Length = 854
Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 117/202 (57%), Gaps = 16/202 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D GMH A + P F DF+ + +D ++I+
Sbjct: 29 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFD------DFDLSTVDILLIS 82
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS---- 122
HFHLDH G+LP+ + G ++MT+ T+A+ +++D +V + +Q TS
Sbjct: 83 HFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-SNTSSSSDQRTSLYTE 141
Query: 123 -DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH++ + + +D T ++ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 142 HDHLS-TLPIIETIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSRE 199
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D++ITE
Sbjct: 200 EDRHLISAEVPKGVKIDVMITE 221
>gi|225561321|gb|EEH09601.1| endoribonuclease ysh1 [Ajellomyces capsulatus G186AR]
Length = 903
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 69/202 (34%), Positives = 117/202 (57%), Gaps = 16/202 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D GMH A + P F DF+ + +D ++I+
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFD------DFDLSTVDILLIS 83
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS---- 122
HFHLDH +LP+ + G ++MT+ T+A+ +++D +V + +Q T+
Sbjct: 84 HFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRV-SNTSSSSDQRTTLYTE 142
Query: 123 -DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH++ + + A+D T ++ +++I + AGHVLGAAMF + +++TGDY+
Sbjct: 143 QDHLS-TLSHIEAIDFNTTHTIN-NIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSRE 200
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + +++D+LITE
Sbjct: 201 EDRHLISAEAPKGVKVDVLITE 222
>gi|154282371|ref|XP_001541981.1| hypothetical protein HCAG_02152 [Ajellomyces capsulatus NAm1]
gi|150410161|gb|EDN05549.1| hypothetical protein HCAG_02152 [Ajellomyces capsulatus NAm1]
Length = 925
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 69/202 (34%), Positives = 117/202 (57%), Gaps = 16/202 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D GMH A + P F DF+ + +D ++I+
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFD------DFDLSTVDILLIS 83
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS---- 122
HFHLDH +LP+ + G ++MT+ T+A+ +++D +V + +Q T+
Sbjct: 84 HFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRV-SNTSSSSDQRTTLYTE 142
Query: 123 -DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH++ + + A+D T ++ +++I + AGHVLGAAMF + +++TGDY+
Sbjct: 143 QDHLS-TLSHIEAIDFNTTHTIN-NIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSRE 200
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + +++D+LITE
Sbjct: 201 EDRHLISAEAPKGVKVDVLITE 222
>gi|336468884|gb|EGO57047.1| hypothetical protein NEUTE1DRAFT_84705 [Neurospora tetrasperma FGSC
2508]
gi|350288819|gb|EGZ70044.1| Endoribonuclease ysh-1 [Neurospora tetrasperma FGSC 2509]
Length = 853
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 68/202 (33%), Positives = 115/202 (56%), Gaps = 13/202 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P F DF+ + +D ++
Sbjct: 27 LNLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFD------DFDLSTVDVLL 80
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---LVDRRGEVEQFT 121
I+HFH+DH +LP+ + G ++MT+ T+A+ +++D +V + + +
Sbjct: 81 ISHFHIDHAASLPYVLAKTNFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPQSSLVYTE 140
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH+ + + A+D T + ++I Y AGHVLGAAMF ++ + +TGDY+
Sbjct: 141 EDHL-KTFPMIEAIDYNTTHTISS-IRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSRE 198
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A++ + +++D+LITE
Sbjct: 199 EDRHLISAKVPKGVKIDVLITE 220
>gi|85079519|ref|XP_956368.1| hypothetical protein NCU03479 [Neurospora crassa OR74A]
gi|74630409|sp|Q8WZS6.1|YSH1_NEUCR RecName: Full=Endoribonuclease ysh-1; AltName: Full=mRNA
3'-end-processing protein ysh-1
gi|18376069|emb|CAD21097.1| related to BRR5 (component of pre-mRNA polyadenylation factor PF I)
[Neurospora crassa]
gi|28917429|gb|EAA27132.1| hypothetical protein NCU03479 [Neurospora crassa OR74A]
Length = 850
Score = 122 bits (307), Expect = 6e-26, Method: Composition-based stats.
Identities = 68/202 (33%), Positives = 115/202 (56%), Gaps = 13/202 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P F DF+ + +D ++
Sbjct: 27 LNLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFD------DFDLSTVDVLL 80
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---LVDRRGEVEQFT 121
I+HFH+DH +LP+ + G ++MT+ T+A+ +++D +V + + +
Sbjct: 81 ISHFHIDHAASLPYVLAKTNFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPQSSLVYTE 140
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH+ + + A+D T + ++I Y AGHVLGAAMF ++ + +TGDY+
Sbjct: 141 EDHL-KTFPMIEAIDYNTTHTISS-IRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSRE 198
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A++ + +++D+LITE
Sbjct: 199 EDRHLISAKVPKGVKIDVLITE 220
>gi|326475916|gb|EGD99925.1| endoribonuclease ysh1 [Trichophyton tonsurans CBS 112818]
Length = 855
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 117/202 (57%), Gaps = 16/202 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D GMH A + P F DF+ + +D ++I+
Sbjct: 29 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFD------DFDLSTVDILLIS 82
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS---- 122
HFHLDH G+LP+ + G ++MT+ T+A+ +++D +V + +Q TS
Sbjct: 83 HFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-SNTSSSSDQRTSLYNE 141
Query: 123 -DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH++ + + +D T ++ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 142 HDHLS-TLPIIETIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSRE 199
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D++ITE
Sbjct: 200 EDRHLISAEVPKGVKIDVMITE 221
>gi|327293421|ref|XP_003231407.1| endoribonuclease ysh1 [Trichophyton rubrum CBS 118892]
gi|326466523|gb|EGD91976.1| endoribonuclease ysh1 [Trichophyton rubrum CBS 118892]
Length = 855
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 69/202 (34%), Positives = 117/202 (57%), Gaps = 16/202 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D GMH A + P F DF+ + +D ++I+
Sbjct: 29 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFD------DFDLSTVDILLIS 82
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS---- 122
HFHLDH G+LP+ + G ++MT+ T+A+ +++D +V + +Q TS
Sbjct: 83 HFHLDHSGSLPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-SNTSSSSDQRTSLYNE 141
Query: 123 -DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH++ + + +D T ++ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 142 HDHLS-TLPIIETIDFNTTHAIN-SIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSRE 199
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D++ITE
Sbjct: 200 EDRHLISAEVPKGVKIDVMITE 221
>gi|407919362|gb|EKG12612.1| Beta-lactamase-like protein [Macrophomina phaseolina MS6]
Length = 842
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 115/200 (57%), Gaps = 12/200 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+S ++ GK +M D GMH AY+ P + S +D ++I+H
Sbjct: 29 LGGGNEVGRSSHIIQYKGKTVMLDAGMHPAYDGLAALPFYDEFDLST-----VDVLLISH 83
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---LVDRRGEVEQFT-SD 123
FH+DH +LP+ + G ++MT+PT+A+ +++D +V ++ +T +D
Sbjct: 84 FHIDHAASLPYVLSKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNISSSSESRIQLYTEAD 143
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
H++ ++ A+D T + ++I Y AGHVLGAAMF ++ +++TGDY+ D
Sbjct: 144 HLS-TFPQIEAIDYYTTHTI-SSIRITPYPAGHVLGAAMFLIEIAGLKILFTGDYSREED 201
Query: 184 RHLGAARIDR-LQLDLLITE 202
RHL +A + + +++D+LITE
Sbjct: 202 RHLISAEVPKNVKVDVLITE 221
>gi|402594378|gb|EJW88304.1| cleavage and polyadenylation specificity factor subunit 3
[Wuchereria bancrofti]
Length = 694
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 74/197 (37%), Positives = 114/197 (57%), Gaps = 14/197 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMH--MAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
LG+GQEVG+SC +T GK+I+ DCG+H M+ D + DF C+ +D +++
Sbjct: 18 LGSGQEVGRSCHYLTFKGKKILLDCGIHPGMSGVDALPFVDFV----DCE---ELDLLLV 70
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
THFHLDH GALP+ E + G +MT+ T+A+ + + DY K V + G +
Sbjct: 71 THFHLDHCGALPWLLEKTAFRGRCFMTHATKAIYRMSIGDYLK--VSKYGGSSDNRMLYN 128
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
E ++KVI D + +V+ ++ + AGHVLGA MF ++ ++YTGD++ DRH
Sbjct: 129 EEDLEKVI--DFHEQKEVN-GIKFWCHVAGHVLGACMFMIEIAGVRILYTGDFSRLEDRH 185
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+LI E
Sbjct: 186 LCAAELPTVSPDVLICE 202
>gi|396488788|ref|XP_003842943.1| similar to cleavage and polyadenylation specifity factor
[Leptosphaeria maculans JN3]
gi|312219521|emb|CBX99464.1| similar to cleavage and polyadenylation specifity factor
[Leptosphaeria maculans JN3]
Length = 861
Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 111/201 (55%), Gaps = 10/201 (4%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
L LG G EVG+SC ++ GK +M D GMH AY P + S +D ++I
Sbjct: 27 LCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAYEGLSAMPFYDEFDLST-----VDVLLI 81
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---LVDRRGEVEQFTS 122
+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V + +++ +T
Sbjct: 82 SHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSETKIQMYTE 141
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ ++D T V ++I Y AGHVLGAAMF ++ +++TGDY+
Sbjct: 142 QDHLNTYPMIESIDFYTTHTV-SGVRITPYPAGHVLGAAMFLMEIAGLKILFTGDYSRED 200
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL +A + +++D+LITE
Sbjct: 201 DRHLVSASVPAGVKVDVLITE 221
>gi|320032162|gb|EFW14117.1| cleavage and polyadenylation specificity factor [Coccidioides
posadasii str. Silveira]
Length = 881
Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats.
Identities = 67/201 (33%), Positives = 113/201 (56%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A + P F S +D ++++H
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDEFDLS-----TVDVLLVSH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS----- 122
FHLDH ALP+ + G ++MT+ T+A+ +++D +V + +Q T+
Sbjct: 85 FHLDHSAALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-SNTSSSSDQRTTLYTEQ 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + A+D T ++ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 144 DHLS-TLPLIEAIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREE 201
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LI E
Sbjct: 202 DRHLVSAEVPKGIKIDVLIAE 222
>gi|303323846|ref|XP_003071912.1| metallo-beta-lactamase superfamily protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240111619|gb|EER29767.1| metallo-beta-lactamase superfamily protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 881
Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats.
Identities = 67/201 (33%), Positives = 113/201 (56%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A + P F S +D ++++H
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDEFDLS-----TVDVLLVSH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS----- 122
FHLDH ALP+ + G ++MT+ T+A+ +++D +V + +Q T+
Sbjct: 85 FHLDHSAALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-SNTSSSSDQRTTLYTEQ 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + A+D T ++ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 144 DHLS-TLPLIEAIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREE 201
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LI E
Sbjct: 202 DRHLVSAEVPKGIKIDVLIAE 222
>gi|119185911|ref|XP_001243562.1| hypothetical protein CIMG_03003 [Coccidioides immitis RS]
gi|392870265|gb|EJB11994.1| endoribonuclease ysh1 [Coccidioides immitis RS]
Length = 881
Score = 122 bits (306), Expect = 9e-26, Method: Composition-based stats.
Identities = 67/201 (33%), Positives = 113/201 (56%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A + P F S +D ++++H
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFDEFDLS-----TVDVLLVSH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS----- 122
FHLDH ALP+ + G ++MT+ T+A+ +++D +V + +Q T+
Sbjct: 85 FHLDHSAALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-SNTSSSSDQRTTLYTEQ 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + A+D T ++ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 144 DHLS-TLPLIEAIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREE 201
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LI E
Sbjct: 202 DRHLVSAEVPKGIKIDVLIAE 222
>gi|258578481|ref|XP_002543422.1| predicted protein [Uncinocarpus reesii 1704]
gi|237903688|gb|EEP78089.1| predicted protein [Uncinocarpus reesii 1704]
Length = 875
Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats.
Identities = 68/201 (33%), Positives = 112/201 (55%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A P F S +D ++++H
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDEFDLS-----TVDVLLVSH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS----- 122
FHLDH ALP+ + G I+MT+ T+A+ +++D +V + +Q T+
Sbjct: 85 FHLDHSAALPYVLSKTNFKGRIFMTHATKAIYKWLIQDNVRV-SNTSSSSDQRTTLYTEQ 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + A+D T ++ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 144 DHLS-TLPLIEAIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREE 201
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LI E
Sbjct: 202 DRHLISAEVPKGIKIDVLIAE 222
>gi|328853485|gb|EGG02623.1| hypothetical protein MELLADRAFT_38438 [Melampsora larici-populina
98AG31]
Length = 672
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 112/202 (55%), Gaps = 14/202 (6%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC V+ ++ D G+H AY P I S +D I+IT
Sbjct: 1 MLGAGQEVGRSCCVIEYKSVTVVCDTGVHPAYTGMAALPFIDEIDWST-----VDAILIT 55
Query: 67 HFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDY-RKVLVDRRGEVEQFTS 122
HFHLDH +L + E + NG ++MT+PT+A+ +++D+ R + GE+ F
Sbjct: 56 HFHLDHAASLTYIMENTNFKEGNGKVFMTHPTKAVYRFLMQDFVRMSTIGTDGEL--FNE 113
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + + + A+D Q + + L+ +Y AGHVLGAAMF ++ ++YTGDY+
Sbjct: 114 EQMTLSYESINAIDYHQEISLG-SLRFTSYPAGHVLGAAMFLIEIAGIRVLYTGDYSTEE 172
Query: 183 DRHLGAARIDRL--QLDLLITE 202
DRHL A++ + D++I E
Sbjct: 173 DRHLIPAKVPNWNEKPDVMICE 194
>gi|240274420|gb|EER37936.1| endoribonuclease ysh-1 [Ajellomyces capsulatus H143]
Length = 240
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 115/201 (57%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D GMH A + P F DF+ + +D ++I+
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKDGFAALPFFD------DFDLSTVDILLIS 83
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT----S 122
HFHLDH +LP+ + G ++MT+ T+A+ +++D +V ++ T
Sbjct: 84 HFHLDHSASLPYVLSKTNFRGRVFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTTLYTEQ 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + A+D T ++ +++I + AGHVLGAAMF + +++TGDY+
Sbjct: 144 DHLS-TLSHIEAIDFNTTHTIN-NIRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREE 201
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL +A + +++D+LITE
Sbjct: 202 DRHLISAEAPKGVKVDVLITE 222
>gi|336259697|ref|XP_003344648.1| hypothetical protein SMAC_07216 [Sordaria macrospora k-hell]
gi|380088385|emb|CCC13649.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 857
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 68/202 (33%), Positives = 111/202 (54%), Gaps = 13/202 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P F DF+ + +D ++
Sbjct: 27 LNLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFD------DFDLSTVDVLL 80
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT--- 121
I+HFH+DH +LP+ + G ++MT+ T+A+ +++D +V
Sbjct: 81 ISHFHIDHAASLPYVLAKTNFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPTSSLVYTE 140
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH+ + + A+D T + ++I Y AGHVLGAAMF ++ + +TGDY+
Sbjct: 141 EDHL-KTFPMIEAIDYNTTHTISS-IRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSRE 198
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 199 EDRHLISAEVPKGVKIDVLITE 220
>gi|256810348|ref|YP_003127717.1| KH-domain/beta-lactamase-domain-containing protein
[Methanocaldococcus fervens AG86]
gi|256793548|gb|ACV24217.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus fervens
AG86]
Length = 634
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 8/197 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC+ V R++ DCG+++A+ D + +P F S + +D +++TH
Sbjct: 185 LGGAREVGRSCLYVQTPDTRVLIDCGINVAFED-KAFPHFDAPEFSIE---DLDAVIVTH 240
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P GY+GP+Y T PTR L ++ +DY ++ + G+ +TS I
Sbjct: 241 AHLDHCGFVPGLFRY-GYDGPVYCTRPTRDLMTLLQKDYLEI-AKKEGKEVPYTSKDIKT 298
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
C+K I +D T + +++ + AGHVLG+A+ + +GD + YTGD R
Sbjct: 299 CVKHTIPIDYGVTTDISPTIKLTLHNAGHVLGSAIAHLHIGDGLYNLAYTGDIKFETSRL 358
Query: 186 LGAARIDRLQLDLLITE 202
L A +L+ LI E
Sbjct: 359 LEPAVCQFPRLETLIIE 375
>gi|410032124|ref|XP_003307804.2| PREDICTED: integrator complex subunit 11-like [Pan troglodytes]
Length = 313
Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/81 (64%), Positives = 68/81 (83%)
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+ ++HFHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS
Sbjct: 11 LALSHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 70
Query: 123 DHIAECMKKVIAVDLKQTVQV 143
I +CMKKV+AV L QTVQV
Sbjct: 71 QMIKDCMKKVVAVHLHQTVQV 91
>gi|406601461|emb|CCH46911.1| hypothetical protein BN7_6516 [Wickerhamomyces ciferrii]
Length = 679
Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats.
Identities = 58/175 (33%), Positives = 102/175 (58%), Gaps = 7/175 (4%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
M D G+H AY+ P + S +D ++I+HFHLDH +LP+ + + G
Sbjct: 1 MLDAGVHPAYSGIAALPFYDEFDLS-----TVDILLISHFHLDHAASLPYVMQHTNFKGR 55
Query: 89 IYMTYPTRALAPIMLEDYRKVL-VDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDL 147
++MT+PT+A+ +L D+ KV + +T + ++E ++ +D T++VD +
Sbjct: 56 VFMTHPTKAIYRWLLSDFVKVTSIGSSSSSALYTDEDLSESFDRIETIDYHSTIEVD-GI 114
Query: 148 QIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
+ AY+AGHVLGAAMF+ ++G +++TGDY+ +RHL A + + D+++TE
Sbjct: 115 RFTAYHAGHVLGAAMFFIEIGGLKLLFTGDYSREENRHLNPAEVPPTKPDVMVTE 169
>gi|154322621|ref|XP_001560625.1| hypothetical protein BC1G_00653 [Botryotinia fuckeliana B05.10]
gi|347837188|emb|CCD51760.1| similar to cleavage and polyadenylation specifity factor
[Botryotinia fuckeliana]
Length = 828
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 112/200 (56%), Gaps = 13/200 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D GMH Y+ P + DF+ + +D ++I+
Sbjct: 29 LGGGNEVGRSCHIIQYKGKTVMLDAGMHAGYDGLAALPFYD------DFDLSTVDLLLIS 82
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ---FTSD 123
HFH+DH +LP+ + G ++MT+PT+A+ ++ D +V G Q +D
Sbjct: 83 HFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIIDSVRVGGASSGGGSQPVYTEAD 142
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
H+ ++ A+D T +++ Y AGHVLGAAMF ++ + +TGDY+ D
Sbjct: 143 HLT-TFAQIEAIDY-HTTHTISSIRVTPYPAGHVLGAAMFLIEIAGLKIFFTGDYSREDD 200
Query: 184 RHLGAARIDR-LQLDLLITE 202
RHL +A + + +++D+LITE
Sbjct: 201 RHLVSAEVPKGVKIDVLITE 220
>gi|119576648|gb|EAW56244.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_j
[Homo sapiens]
Length = 476
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 67/78 (85%)
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
I +CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDR
Sbjct: 2 IKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDR 61
Query: 185 HLGAARIDRLQLDLLITE 202
HLGAA ID+ + +LLITE
Sbjct: 62 HLGAAWIDKCRPNLLITE 79
>gi|452002411|gb|EMD94869.1| hypothetical protein COCHEDRAFT_1222148 [Cochliobolus
heterostrophus C5]
Length = 872
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 118/203 (58%), Gaps = 14/203 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D GMH A+ P + DF+ + +D ++
Sbjct: 27 LCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHEGLSAMPFYD------DFDLSTVDVLL 80
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---LVDRRGEVEQFT 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V + +++ +T
Sbjct: 81 ISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSETKIQMYT 140
Query: 122 -SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+DH+ + ++D T V ++I Y AGHVLGAAMF ++ +++TGDY+
Sbjct: 141 EADHL-NTYPMIESIDFYTTHTV-SGVRITPYPAGHVLGAAMFLMEIAGLKILFTGDYSR 198
Query: 181 TPDRHLGAARIDR-LQLDLLITE 202
DRHL +A + +++D+LITE
Sbjct: 199 EDDRHLVSASVPPGVKIDVLITE 221
>gi|451852830|gb|EMD66124.1| hypothetical protein COCSADRAFT_34708 [Cochliobolus sativus ND90Pr]
Length = 872
Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 118/203 (58%), Gaps = 14/203 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D GMH A+ P + DF+ + +D ++
Sbjct: 27 LCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHEGLSAMPFYD------DFDLSTVDVLL 80
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---LVDRRGEVEQFT 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V + +++ +T
Sbjct: 81 ISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSETKIQMYT 140
Query: 122 -SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+DH+ + ++D T V ++I Y AGHVLGAAMF ++ +++TGDY+
Sbjct: 141 EADHL-NTYPMIESIDFYTTHTV-SGVRITPYPAGHVLGAAMFLMEIAGLKILFTGDYSR 198
Query: 181 TPDRHLGAARIDR-LQLDLLITE 202
DRHL +A + +++D+LITE
Sbjct: 199 EDDRHLVSASVPPGVKIDVLITE 221
>gi|304317834|ref|YP_003852979.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302779336|gb|ADL69895.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 820
Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats.
Identities = 67/196 (34%), Positives = 105/196 (53%), Gaps = 9/196 (4%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G EVG SC +V I+GK I+ DCG+ M+ + PDF I + N +D IVI+H
Sbjct: 7 GGASEVGASCYLVNIDGKNILLDCGIRMS-SSKDNLPDFQHIQE----NGGVDVIVISHA 61
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
H+DHIGALP + I + IYMT+ + L ++L D K++ +R E+ + H+ E
Sbjct: 62 HMDHIGALPIISRIYP-DAKIYMTHAAKDLTRVLLYDSLKIM-EREAEIPAYAEIHVKEM 119
Query: 129 MKKVIAVDLKQTVQ--VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ ++I T +D DL++ Y AGH+ GAA Y + + Y+GD++ +
Sbjct: 120 LNRIICHTPGHTFSPFLDADLKVTFYSAGHIAGAASIYIVGNEGSFFYSGDFSRFRQNTI 179
Query: 187 GAARIDRLQLDLLITE 202
A I +L+ D+ E
Sbjct: 180 EGASIPKLRPDVAFFE 195
>gi|330923041|ref|XP_003300074.1| hypothetical protein PTT_11224 [Pyrenophora teres f. teres 0-1]
gi|311325959|gb|EFQ91831.1| hypothetical protein PTT_11224 [Pyrenophora teres f. teres 0-1]
Length = 705
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 118/203 (58%), Gaps = 14/203 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D GMH A+ P + DF+ + +D ++
Sbjct: 27 LCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHEGLSAMPFYD------DFDLSTVDVLL 80
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---LVDRRGEVEQFT 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V + +++ +T
Sbjct: 81 ISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSETKIQMYT 140
Query: 122 -SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+DH+ + ++D T V ++I Y AGHVLGAAMF ++ +++TGDY+
Sbjct: 141 EADHL-NTYPMIESIDFYTTHTVS-GVRITPYPAGHVLGAAMFLMEIAGLKILFTGDYSR 198
Query: 181 TPDRHLGAARIDR-LQLDLLITE 202
DRHL +A + +++D+LITE
Sbjct: 199 EDDRHLVSASVPAGVKVDVLITE 221
>gi|189208340|ref|XP_001940503.1| endoribonuclease YSH1 [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187976596|gb|EDU43222.1| endoribonuclease YSH1 [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 871
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 118/203 (58%), Gaps = 14/203 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D GMH A+ P + DF+ + +D ++
Sbjct: 27 LCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAHEGLSAMPFYD------DFDLSTVDVLL 80
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---LVDRRGEVEQFT 121
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V + +++ +T
Sbjct: 81 ISHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSNSETKIQMYT 140
Query: 122 -SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+DH+ + ++D T V ++I Y AGHVLGAAMF ++ +++TGDY+
Sbjct: 141 EADHL-NTYPMIESIDFYTTHTV-AGVRITPYPAGHVLGAAMFLMEIAGLKILFTGDYSR 198
Query: 181 TPDRHLGAARIDR-LQLDLLITE 202
DRHL +A + +++D+LITE
Sbjct: 199 EDDRHLVSASVPAGVKVDVLITE 221
>gi|121700651|ref|XP_001268590.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus clavatus NRRL 1]
gi|119396733|gb|EAW07164.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus clavatus NRRL 1]
Length = 878
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 66/200 (33%), Positives = 110/200 (55%), Gaps = 12/200 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A P F S +D ++I+H
Sbjct: 29 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLS-----TVDILLISH 83
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT----SD 123
FH+DH ALP+ + G ++MT+ T+A+ +++D +V ++ T +D
Sbjct: 84 FHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSNTASSSDQRTTLYTEND 143
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
H++ + + +D T ++ ++I + AGHVLGAAMF + +++TGDY+ D
Sbjct: 144 HLS-TLPLIETIDFNTTHTINS-IRITPFPAGHVLGAAMFLVSIAGLNILFTGDYSREED 201
Query: 184 RHLGAARIDR-LQLDLLITE 202
RHL A + + +++D+LITE
Sbjct: 202 RHLIPAEVPKGIKIDVLITE 221
>gi|115397403|ref|XP_001214293.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192484|gb|EAU34184.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 870
Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats.
Identities = 68/201 (33%), Positives = 110/201 (54%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A P F S +D ++I+H
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLS-----TVDVLLISH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS----- 122
FH+DH ALP+ + G ++MT+ T+A+ +++D +V + +Q T+
Sbjct: 85 FHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-SNTASSSDQRTTLYTEH 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + +D T V+ + I + AGHVLGAAMF + +++TGDY+
Sbjct: 144 DHLS-TLPLIETIDFNTTHTVNS-IHITPFPAGHVLGAAMFLVSIAGLNILFTGDYSREE 201
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL A + + +++D+LITE
Sbjct: 202 DRHLIPAEVPKGVKIDVLITE 222
>gi|67517547|ref|XP_658594.1| hypothetical protein AN0990.2 [Aspergillus nidulans FGSC A4]
gi|74598547|sp|Q5BEP0.1|YSH1_EMENI RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|40746402|gb|EAA65558.1| hypothetical protein AN0990.2 [Aspergillus nidulans FGSC A4]
gi|259488717|tpe|CBF88384.1| TPA: Endoribonuclease ysh1 (EC 3.1.27.-)(mRNA 3'-end-processing
protein ysh1) [Source:UniProtKB/Swiss-Prot;Acc:Q5BEP0]
[Aspergillus nidulans FGSC A4]
Length = 884
Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 111/201 (55%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A P F S +D ++I+H
Sbjct: 29 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLST-----VDILLISH 83
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS----- 122
FH+DH ALP+ + G ++MT+ T+A+ +++D +V + +Q T+
Sbjct: 84 FHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-NNTASSSDQRTTLYTEH 142
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + +D T ++ ++I Y AGHVLGAAMF + +++TGDY+
Sbjct: 143 DHLS-TLPLIETIDFNTTHTINS-IRITPYPAGHVLGAAMFLISIAGLNILFTGDYSREE 200
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL A + R +++D+LITE
Sbjct: 201 DRHLIPATVPRGVKIDVLITE 221
>gi|221482308|gb|EEE20663.1| RNA-metabolising metallo-beta-lactamase domain-containing protein,
putative [Toxoplasma gondii GT1]
Length = 1090
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 53/116 (45%), Positives = 77/116 (66%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
VLGAGQ+VG+S V V + + ++FDCG H+ D R++P F +++ +A+D V++
Sbjct: 79 VLGAGQDVGRSAVYVRLGRRCVLFDCGCHLGMKDARRFPLFDKLAPRGILTHAVDACVVS 138
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
HFHLDH GALP TE Y GP+ MT+PT+AL+P++L D +V DR V Q T+
Sbjct: 139 HFHLDHCGALPTLTEFLQYRGPVLMTFPTKALSPLLLLDCARVGRDRAQRVPQRTA 194
Score = 75.9 bits (185), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/56 (58%), Positives = 45/56 (80%)
Query: 147 LQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
LQ+ +YAGHVLGAAMF K+G +++VYTGD+N PDRHLG+A + L+ D+LI+E
Sbjct: 301 LQLTPFYAGHVLGAAMFELKLGKASVVYTGDFNTIPDRHLGSAALPCLRPDVLISE 356
>gi|70996586|ref|XP_753048.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus Af293]
gi|74672067|sp|Q4WRC2.1|YSH1_ASPFU RecName: Full=Endoribonuclease ysh1; AltName: Full=mRNA
3'-end-processing protein ysh1
gi|66850683|gb|EAL91010.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus Af293]
gi|159131784|gb|EDP56897.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Aspergillus fumigatus A1163]
Length = 872
Score = 120 bits (301), Expect = 4e-25, Method: Composition-based stats.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A P F S +D ++I+H
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLS-----TVDILLISH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS----- 122
FH+DH ALP+ + G ++MT+ T+A+ +++D +V + +Q T+
Sbjct: 85 FHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-SNTASSSDQRTTLYTEH 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + +D T V+ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 144 DHLS-TLPLIETIDFNTTHTVNS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREE 201
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL A + + +++D+LITE
Sbjct: 202 DRHLIPAEVPKGIKIDVLITE 222
>gi|119494361|ref|XP_001264076.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Neosartorya fischeri NRRL 181]
gi|119412238|gb|EAW22179.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Neosartorya fischeri NRRL 181]
Length = 878
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 67/201 (33%), Positives = 111/201 (55%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A P F S +D ++I+H
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLS-----TVDILLISH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS----- 122
FH+DH ALP+ + G ++MT+ T+A+ +++D +V + +Q T+
Sbjct: 85 FHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-SNTASSSDQRTTLYTEH 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + +D T ++ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 144 DHLS-TLPLIETIDFNTTHTINS-IRITPFPAGHVLGAAMFLVSIAGLNILFTGDYSREE 201
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL A + + +++D+LITE
Sbjct: 202 DRHLIPAEVPKGIKIDVLITE 222
>gi|304315326|ref|YP_003850473.1| metal-dependent RNase [Methanothermobacter marburgensis str.
Marburg]
gi|302588785|gb|ADL59160.1| predicted metal-dependent RNase [Methanothermobacter marburgensis
str. Marburg]
Length = 636
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 66/193 (34%), Positives = 107/193 (55%), Gaps = 10/193 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQ-YPDFSRISKSCDFNNAIDCIVIT 66
+G +EVG+SC+ + R++ DCG+++A D R YP + + D ++D ++IT
Sbjct: 185 MGGFREVGRSCLYLQTPNSRVLLDCGVNVAGGDDRNSYPYLNVPEFTLD---SLDAVIIT 241
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH G LP+ GY+GP+Y T PTR L ++ D+ + R E F H+
Sbjct: 242 HAHLDHSGFLPYLYHY-GYDGPVYCTAPTRDLMTLLQLDHIDI-AHREDEPLPFNVKHVK 299
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
+ +K I +D + + D+++ + AGH+LG+AM + +GD MVYTGD+ R
Sbjct: 300 KSVKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAMAHLHIGDGQHNMVYTGDFKYEQSR 359
Query: 185 HL--GAARIDRLQ 195
L A+R R++
Sbjct: 360 LLEPAASRFPRIE 372
>gi|41614872|ref|NP_963370.1| hypothetical protein NEQ076 [Nanoarchaeum equitans Kin4-M]
gi|40068596|gb|AAR38931.1| NEQ076 [Nanoarchaeum equitans Kin4-M]
Length = 635
Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats.
Identities = 67/200 (33%), Positives = 115/200 (57%), Gaps = 12/200 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAY--NDHRQYPDFSRISKSCDFN-NAIDCIV 64
LG +VG+S +++ RI+ D G+ ++ N+ YP I + +F+ +D +V
Sbjct: 194 LGGASQVGRSALLLQTKESRILLDFGVDLSLPPNNKNAYP----IVELPEFDVKELDAVV 249
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
ITH HLDH+G +PF ++ GY GP+Y+T PT +A + L DY ++ V+ F+ D
Sbjct: 250 ITHAHLDHVGFVPFLYKM-GYKGPVYLTPPTLDIATLSLLDYLRIA--NENNVKLFSGDD 306
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKV--GDSAMVYTGDYNMTP 182
I +K I ++ QT + D+++ Y AGH+LG+A+ + + G S ++YTGDY + P
Sbjct: 307 IRNFVKHSITIEYGQTTDIASDVKLTFYNAGHILGSALAHLNIANGYSNVLYTGDYKVKP 366
Query: 183 DRHLGAARIDRLQLDLLITE 202
A+I + ++++ ITE
Sbjct: 367 TFLFDGAQIPQAKVNIAITE 386
>gi|358365452|dbj|GAA82074.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus kawachii IFO 4308]
Length = 882
Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats.
Identities = 66/200 (33%), Positives = 109/200 (54%), Gaps = 12/200 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A P F S +D ++I+H
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLS-----TVDILLISH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT----SD 123
FH+DH ALP+ + G ++MT+ T+A+ +++D +V ++ T D
Sbjct: 85 FHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSSTASSSDQRTTLYTEQD 144
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
H++ + + +D T ++ ++I + AGHVLGAAMF + +++TGDY+ D
Sbjct: 145 HLS-TLPLIETIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREED 202
Query: 184 RHLGAARIDR-LQLDLLITE 202
RHL A + + +++D+LITE
Sbjct: 203 RHLIPAEVPKGVKIDVLITE 222
>gi|145230249|ref|XP_001389433.1| endoribonuclease ysh1 [Aspergillus niger CBS 513.88]
gi|134055550|emb|CAK37196.1| unnamed protein product [Aspergillus niger]
Length = 874
Score = 120 bits (300), Expect = 5e-25, Method: Composition-based stats.
Identities = 66/200 (33%), Positives = 109/200 (54%), Gaps = 12/200 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A P F S +D ++I+H
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLS-----TVDILLISH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT----SD 123
FH+DH ALP+ + G ++MT+ T+A+ +++D +V ++ T D
Sbjct: 85 FHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRVSSTASSSDQRTTLYTEQD 144
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
H++ + + +D T ++ ++I + AGHVLGAAMF + +++TGDY+ D
Sbjct: 145 HLS-TLPLIETIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREED 202
Query: 184 RHLGAARIDR-LQLDLLITE 202
RHL A + + +++D+LITE
Sbjct: 203 RHLIPAEVPKGVKIDVLITE 222
>gi|389740019|gb|EIM81211.1| mRNA 3'-end-processing protein YSH1 [Stereum hirsutum FP-91666 SS1]
Length = 841
Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 69/203 (33%), Positives = 107/203 (52%), Gaps = 10/203 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
+ +LGAGQEVG+SC V+ + K I+ D G+H A++ P + S +D
Sbjct: 7 LSITMLGAGQEVGRSCCVLQYHDKTIVLDAGVHPAHSGMASLPFVDELDWST-----VDA 61
Query: 63 IVITHFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
I+ITHFHLDH AL + E + G +YMT+PT+AL M++D+ V +
Sbjct: 62 ILITHFHLDHAAALTYIMEKTNFRDGKGKVYMTHPTKALHKFMMQDF--VRMSNSSTDAL 119
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ ++ + +I V Q + + Y+AGHVLGA M+ + ++YTGDY+
Sbjct: 120 ISPLDLSMSISSIIPVSAHQLITPCPGVTFTPYHAGHVLGACMYLIDMAGIKILYTGDYS 179
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
DRHL A + ++ D+LI E
Sbjct: 180 REEDRHLVKAEVPPVRPDVLIVE 202
>gi|169767044|ref|XP_001817993.1| endoribonuclease ysh1 [Aspergillus oryzae RIB40]
gi|83765848|dbj|BAE55991.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872741|gb|EIT81836.1| mRNA cleavage and polyadenylation factor II complex, BRR5
[Aspergillus oryzae 3.042]
Length = 870
Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 67/201 (33%), Positives = 111/201 (55%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A P F S +D ++I+H
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLS-----TVDILLISH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS----- 122
FH+DH ALP+ + G ++MT+ T+A+ +++D +V + +Q T+
Sbjct: 85 FHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-SNTASSSDQRTTLYTEH 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + +D T ++ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 144 DHLS-TLPLIETIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREE 201
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL A + + +++D+LITE
Sbjct: 202 DRHLIPAEVPKGIKIDVLITE 222
>gi|365990355|ref|XP_003672007.1| hypothetical protein NDAI_0I01950 [Naumovozyma dairenensis CBS 421]
gi|343770781|emb|CCD26764.1| hypothetical protein NDAI_0I01950 [Naumovozyma dairenensis CBS 421]
Length = 757
Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 63/182 (34%), Positives = 105/182 (57%), Gaps = 17/182 (9%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVITHFHLDHIGALPFFTEICGYNG 87
M D G+H AY P + DF+ + +D ++I+HFHLDH +LP+ + +NG
Sbjct: 1 MLDAGIHPAYQGMASLPFYD------DFDLSTVDVLLISHFHLDHAASLPYVMQKTNFNG 54
Query: 88 PIYMTYPTRALAPIMLEDYRKVL-------VDRRGEVEQFTSDHIAECMKKVIAVDLKQT 140
++MT+PT+A+ +L D+ +V +DR E +T++ + E K+ VD T
Sbjct: 55 RVFMTHPTKAIYRWLLRDFVRVTSIGVNSPLDR--EENLYTNEDLVESFDKIETVDYHST 112
Query: 141 VQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLI 200
+ V+ ++ A++AGHVLGAAMF ++ +++TGDY+ DRHL +A + L ++LI
Sbjct: 113 IDVN-GIKFTAFHAGHVLGAAMFQIEIAGMRVLFTGDYSREKDRHLNSAEVPPLSSNILI 171
Query: 201 TE 202
E
Sbjct: 172 VE 173
>gi|238483863|ref|XP_002373170.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus flavus NRRL3357]
gi|220701220|gb|EED57558.1| cleavage and polyadenylation specifity factor, 73 kDa subunit
[Aspergillus flavus NRRL3357]
Length = 870
Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 67/201 (33%), Positives = 111/201 (55%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A P F S +D ++I+H
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLS-----TVDILLISH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS----- 122
FH+DH ALP+ + G ++MT+ T+A+ +++D +V + +Q T+
Sbjct: 85 FHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-SNTASSSDQRTTLYTEH 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + +D T ++ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 144 DHLS-TLPLIETIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREE 201
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL A + + +++D+LITE
Sbjct: 202 DRHLIPAEVPKGIKIDVLITE 222
>gi|448118544|ref|XP_004203525.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|448120951|ref|XP_004204108.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|359384393|emb|CCE79097.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
gi|359384976|emb|CCE78511.1| Piso0_001136 [Millerozyma farinosa CBS 7064]
Length = 809
Score = 119 bits (299), Expect = 5e-25, Method: Composition-based stats.
Identities = 66/210 (31%), Positives = 109/210 (51%), Gaps = 21/210 (10%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC V+ + IM D G+H P + S +D ++I+H
Sbjct: 19 LGGCNEVGRSCHVIEYKNRVIMLDAGVHPGLQGLNSLPFYDEYDLS-----KVDILLISH 73
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLV-----DRRGEVEQ--- 119
FHLDH +LP+ + + G ++MT+ T+A+ +L D+ KV D R +
Sbjct: 74 FHLDHAASLPYVMQHTNFKGRVFMTHATKAIYRWLLSDFVKVTSIGGGGDPRMNNDDSSL 133
Query: 120 -------FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAM 172
+T D + ++ +D T++VD ++ AY+AGHVLGA M+ ++G +
Sbjct: 134 NTSSGNLYTDDDLMRSFDRIETIDYHSTIEVD-GIRFTAYHAGHVLGACMYLIEIGGLKV 192
Query: 173 VYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
++TGD++ DRHL A I ++ D+LI+E
Sbjct: 193 LFTGDFSCEEDRHLQVAEIPPVKPDILISE 222
>gi|118392416|ref|XP_001028800.1| putative FEG protein [Tetrahymena thermophila]
gi|89282491|gb|EAR81137.1| putative FEG protein [Tetrahymena thermophila SB210]
Length = 178
Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/140 (44%), Positives = 86/140 (61%), Gaps = 21/140 (15%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCD------F 56
I+ LGAGQ+VG+S CG+HM ND +YPDF +I + + +
Sbjct: 10 IEVYPLGAGQDVGRSY-------------CGLHMGVNDLTRYPDFEKIKQIWNIPEKRKW 56
Query: 57 NNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGE 116
+ ID ++I+HFHLDHIGALP+FTEI Y+GPIYMT PT+AL P M ED+RKV+ + +
Sbjct: 57 DQIIDLVLISHFHLDHIGALPYFTEIYNYDGPIYMTSPTKALLPYMCEDFRKVITE--SQ 114
Query: 117 VEQFTSDHIAECMKKVIAVD 136
++FT D I + + I D
Sbjct: 115 KKEFTDDSIPQTPAQKIIND 134
>gi|342319748|gb|EGU11695.1| Endoribonuclease YSH1 [Rhodotorula glutinis ATCC 204091]
Length = 857
Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats.
Identities = 69/208 (33%), Positives = 112/208 (53%), Gaps = 19/208 (9%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC V+ G+ I+ D G+H A++ P + S +D I+IT
Sbjct: 34 LLGAGQEVGRSCCVIRYKGRTIVCDAGVHPAFSGMAALPFLDELDWS-----TVDAILIT 88
Query: 67 HFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-FTS 122
HFHLDH L + E + NG +YM++PT+A+ ++ D+ V V G + FT
Sbjct: 89 HFHLDHAACLTYVMEKTNFKEGNGVVYMSHPTKAVYRYLMSDF--VRVSTAGSDDNLFTE 146
Query: 123 DHIAECMKKVIAVDLKQTVQV------DKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
+ ++ + D +Q + + ++ ++ AGHVLGA MF +V + ++YTG
Sbjct: 147 SEMLASFDQIQSFDFEQEILLPPSSTSSASVRFTSFAAGHVLGACMFLIEVAGARVLYTG 206
Query: 177 DYNMTPDRHLGAARIDRLQL--DLLITE 202
DY+ DRHL A++ + D++I E
Sbjct: 207 DYSTEEDRHLVPAKVPNWERPPDVMICE 234
>gi|333897915|ref|YP_004471789.1| beta-lactamase [Thermoanaerobacterium xylanolyticum LX-11]
gi|333113180|gb|AEF18117.1| beta-lactamase domain protein [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 820
Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats.
Identities = 67/196 (34%), Positives = 105/196 (53%), Gaps = 9/196 (4%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G EVG SC +V I+GK I+ DCG+ MA + PDF I + N +D I+I+H
Sbjct: 7 GGASEVGASCYLVNIDGKNILLDCGIRMA-SGKDNLPDFQLIQE----NGGVDVILISHA 61
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
H+DHIGALP + I + IYMT+ + L ++L D K++ +R E+ + H+ E
Sbjct: 62 HMDHIGALPILSRIYP-DAKIYMTHAAKDLTRVLLYDSLKIM-EREAEIPAYAEIHVKEM 119
Query: 129 MKKVIAVDLKQTVQ--VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ ++I T +D DL++ Y AGH+ GAA Y + + Y+GD++ +
Sbjct: 120 LNRIICHTPGHTFSPFLDSDLKVTFYSAGHIAGAASTYIVGNEGSFFYSGDFSRFRQNTI 179
Query: 187 GAARIDRLQLDLLITE 202
A I +L+ D+ E
Sbjct: 180 EGASIPKLRPDVAFFE 195
>gi|260942735|ref|XP_002615666.1| hypothetical protein CLUG_04548 [Clavispora lusitaniae ATCC 42720]
gi|238850956|gb|EEQ40420.1| hypothetical protein CLUG_04548 [Clavispora lusitaniae ATCC 42720]
Length = 797
Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats.
Identities = 64/212 (30%), Positives = 113/212 (53%), Gaps = 24/212 (11%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG EVG+SC ++ K IM D G+H + P F D++ + +D ++I+
Sbjct: 19 LGGCNEVGRSCHIIEYKNKVIMLDSGVHPGLSGMNSLPFFD------DYDLSKVDILLIS 72
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVL-VDRRGE--------- 116
HFHLDH +LP+ + + G ++MT+ T+A+ +L D+ +V + G+
Sbjct: 73 HFHLDHAASLPYVMQQTSFRGRVFMTHATKAIYRWLLSDFVRVTSLSGSGDEGRSMNGSQ 132
Query: 117 ------VEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS 170
+T + + K+ +D T++++ ++ AY+AGHVLGA M++ ++G
Sbjct: 133 NSGTTSANLYTDEDLMSSFDKIETIDYHSTMEIE-GIRFTAYHAGHVLGACMYFVEIGGL 191
Query: 171 AMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
+++TGDY+ DRHL A + + D+LITE
Sbjct: 192 KVLFTGDYSREEDRHLKVAEVPPTRPDILITE 223
>gi|34783058|gb|AAH00675.2| CPSF3L protein, partial [Homo sapiens]
Length = 473
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/76 (73%), Positives = 66/76 (86%)
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHL
Sbjct: 1 DCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHL 60
Query: 187 GAARIDRLQLDLLITE 202
GAA ID+ + +LLITE
Sbjct: 61 GAAWIDKCRPNLLITE 76
>gi|313244184|emb|CBY15021.1| unnamed protein product [Oikopleura dioica]
Length = 690
Score = 119 bits (298), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 110/200 (55%), Gaps = 15/200 (7%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP--DFSRISKSCDFNNAIDCIV 64
+LGAGQEVG+SC ++ ++ D G+H N P D++ K ID ++
Sbjct: 14 MLGAGQEVGRSCHLIEFKVLELIEDMGIHPGINGLNGLPFMDYTDPDK-------IDILL 66
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTS 122
I+HFHLDH G LP+F + G ++MTY T+A+ +L DY KV VE+ FT
Sbjct: 67 ISHFHLDHCGGLPWFLTKTQFKGRVFMTYATKAIYRWLLSDYIKV---SNVGVEELLFTE 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ E + ++ V ++ ++ AY+AGHVLGAA F ++ +++TGD++
Sbjct: 124 KDLEETLDRIETVKFHAEKHIN-GIKFCAYHAGHVLGAAQFMVEIAGVKVLFTGDFSREE 182
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL AA + + D+LI E
Sbjct: 183 DRHLMAAEVPPQKPDILIME 202
>gi|313216448|emb|CBY37756.1| unnamed protein product [Oikopleura dioica]
Length = 690
Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 71/200 (35%), Positives = 110/200 (55%), Gaps = 15/200 (7%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP--DFSRISKSCDFNNAIDCIV 64
+LGAGQEVG+SC ++ ++ D G+H N P D++ K ID ++
Sbjct: 14 MLGAGQEVGRSCHLIEFKVLELIQDMGIHPGINGLNGLPFMDYTDPDK-------IDILL 66
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTS 122
I+HFHLDH G LP+F + G ++MTY T+A+ +L DY KV VE+ FT
Sbjct: 67 ISHFHLDHCGGLPWFLTKTQFKGRVFMTYATKAIYRWLLSDYIKV---SNVGVEELLFTE 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ E + ++ V ++ ++ AY+AGHVLGAA F ++ +++TGD++
Sbjct: 124 KDLEETLDRIETVKFHAEKHIN-GIKFCAYHAGHVLGAAQFMVEIAGVKVLFTGDFSREE 182
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL AA + + D+LI E
Sbjct: 183 DRHLMAAEVPPQKPDILIME 202
>gi|378730429|gb|EHY56888.1| endoribonuclease ysh1 [Exophiala dermatitidis NIH/UT8656]
Length = 868
Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 111/205 (54%), Gaps = 19/205 (9%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG QEVG+SC ++ GK +M D GMH P F DF+ + +D ++I+
Sbjct: 30 LGGCQEVGRSCHILQYKGKTVMLDAGMHTGREGMSAMPYFD------DFDLSTVDILLIS 83
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS---- 122
HFHLDH ALP+ + G ++MT+PT+A+ +++D +V + +Q TS
Sbjct: 84 HFHLDHAAALPYVLAKTDFKGRVFMTHPTKAIYKWLIQDSVRV-SNTSSTSDQRTSLYTE 142
Query: 123 -DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DHI+ + ++ +D T V ++I Y AGHVLGAAMF + + +T DY+
Sbjct: 143 ADHIS-TLPQIETIDFYTTHTVS-GVRITPYPAGHVLGAAMFLINIAGLNIWFTADYSRE 200
Query: 182 PDRHLGAARIDRL----QLDLLITE 202
DRHL AA + ++DLLITE
Sbjct: 201 QDRHLVAAEVPNKSTVGKIDLLITE 225
>gi|312136618|ref|YP_004003955.1| kh-domain/beta-lactamase-domain-containing protein [Methanothermus
fervidus DSM 2088]
gi|311224337|gb|ADP77193.1| KH-domain/beta-lactamase-domain protein [Methanothermus fervidus
DSM 2088]
Length = 650
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 62/197 (31%), Positives = 109/197 (55%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC+ + +I+ DCG+++A ND + + I + + I+ +VI+H
Sbjct: 200 LGGFREVGRSCLYLQTPNSKILLDCGVNVAANDEKNAYPYLNIPEF--ILDEIEAVVISH 257
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P+ GY GP+Y + PTR L ++ D+ + +R G F + + +
Sbjct: 258 AHLDHSGFVPYLYHY-GYRGPVYCSAPTRDLMALLQLDHIDI-AEREGRELPFNAKDVNK 315
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
C+K I ++ + + D+++ + AGH+LG+A+ + +GD +VYTGD+ R
Sbjct: 316 CLKHTITLEYGEVTDITPDIRLTLHNAGHILGSAILHLHIGDGQHNLVYTGDFKYEKTRL 375
Query: 186 LGAARIDRLQLDLLITE 202
L A D +L+ L+ E
Sbjct: 376 LEPAVTDFPRLETLVME 392
>gi|358396914|gb|EHK46289.1| hypothetical protein TRIATDRAFT_132454 [Trichoderma atroviride IMI
206040]
Length = 881
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 112/212 (52%), Gaps = 23/212 (10%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIM-----------FDCGMHMAYNDHRQYPDFSRISKSC 54
L LG G EVG+SC ++ GK +M D G H AY+ P +
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMVRKSRDALEAALDAGQHPAYDGLAALPFYD------ 81
Query: 55 DFN-NAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDR 113
DF+ + +D ++I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V
Sbjct: 82 DFDLSTVDVLLISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVANTA 141
Query: 114 RGEVEQF--TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA 171
Q DH+ ++ A+D T ++I Y AGHVLGAAMF ++
Sbjct: 142 SNSATQLYTEQDHL-NTFPQIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIAGLN 199
Query: 172 MVYTGDYNMTPDRHLGAARIDR-LQLDLLITE 202
+ +TGDY+ DRHL +A + + L++D+LITE
Sbjct: 200 IFFTGDYSREQDRHLVSAEVPKGLKIDVLITE 231
>gi|390933363|ref|YP_006390868.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389568864|gb|AFK85269.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 820
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 66/196 (33%), Positives = 103/196 (52%), Gaps = 9/196 (4%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G EVG SC + I+GK I+ DCG+ M+ N PDF I + N +D I+I+H
Sbjct: 7 GGASEVGASCYLANIDGKNILLDCGIRMSSNKD-NLPDFQLIQE----NGGVDVILISHA 61
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
H+DHIGALP + I + IYMT+ + L ++L D K++ +R E+ + H+ E
Sbjct: 62 HMDHIGALPIISRIYP-DAKIYMTHAAKDLTRVLLYDSLKIM-EREAEIPAYAEIHVKEM 119
Query: 129 MKKVIAVDLKQTVQ--VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ ++I T +D DL++ Y AGH+ GAA Y + Y+GD++ +
Sbjct: 120 LNRIICHTPGHTFSPFLDADLKVTFYSAGHIAGAASIYIVGNGGSFFYSGDFSRFRQNTI 179
Query: 187 GAARIDRLQLDLLITE 202
A I +L+ D+ E
Sbjct: 180 EGASIPKLRPDVAFFE 195
>gi|15669421|ref|NP_248231.1| putative mRNA 3'-end processing factor 2 [Methanocaldococcus
jannaschii DSM 2661]
gi|2496166|sp|Q58633.1|Y1236_METJA RecName: Full=Uncharacterized protein MJ1236
gi|1591868|gb|AAB99240.1| putative mRNA 3'-end processing factor 2 [Methanocaldococcus
jannaschii DSM 2661]
Length = 634
Score = 118 bits (295), Expect = 2e-24, Method: Composition-based stats.
Identities = 66/197 (33%), Positives = 107/197 (54%), Gaps = 8/197 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC+ V R++ DCG+++A D + +P F S + +D +++TH
Sbjct: 185 LGGAREVGRSCLYVQTPDTRVLIDCGINVACED-KAFPHFDAPEFSIE---DLDAVIVTH 240
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P GY+GP+Y T PTR L ++ +DY ++ + G+ +TS I
Sbjct: 241 AHLDHCGFIPGLFRY-GYDGPVYCTRPTRDLMTLLQKDYLEI-AKKEGKEVPYTSKDIKT 298
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
C+K I +D T + +++ + AGHVLG+A+ + +G+ + YTGD R
Sbjct: 299 CVKHTIPIDYGVTTDISPTIKLTLHNAGHVLGSAIAHLHIGEGLYNLAYTGDIKFETSRL 358
Query: 186 LGAARIDRLQLDLLITE 202
L A +L+ LI E
Sbjct: 359 LEPAVCQFPRLETLIIE 375
>gi|150400487|ref|YP_001324253.1| beta-lactamase domain-containing protein [Methanococcus aeolicus
Nankai-3]
gi|150013190|gb|ABR55641.1| beta-lactamase domain protein [Methanococcus aeolicus Nankai-3]
Length = 635
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 110/197 (55%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++C + RI+ DCG+++A + R +P F + + ID +V+TH
Sbjct: 185 LGGAREVGRTCNYLQTPESRILIDCGINVAMDGDRAFPHFDAPEFAVE---EIDAVVVTH 241
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P GY+GPIY + PTR L ++ +DY + ++ G+V ++S I +
Sbjct: 242 AHLDHCGFVPGLFRY-GYDGPIYCSKPTRDLMTLLQKDYIDI-AEKEGKVVPYSSKDIKK 299
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
C+K +I +D T V +++ + AGH+LG+A+ + +GD + YTGD R
Sbjct: 300 CVKHIIPIDYGVTTDVAPAIKLTMHNAGHILGSAIAHCHIGDGLYNIAYTGDIKFEASRL 359
Query: 186 LGAARIDRLQLDLLITE 202
L A + +L+ LI E
Sbjct: 360 LEPAVCNFPRLETLIIE 376
>gi|289192183|ref|YP_003458124.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus sp.
FS406-22]
gi|288938633|gb|ADC69388.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus sp.
FS406-22]
Length = 634
Score = 117 bits (294), Expect = 2e-24, Method: Composition-based stats.
Identities = 66/197 (33%), Positives = 107/197 (54%), Gaps = 8/197 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC+ V R++ DCG+++A D + +P F S + +D +++TH
Sbjct: 185 LGGAREVGRSCLYVQTPDTRVLIDCGINVACED-KAFPHFDAPEFSIE---DLDAVIVTH 240
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P GY+GP+Y T PTR L ++ +DY ++ + G+ +TS I
Sbjct: 241 AHLDHCGFVPGLFRY-GYDGPVYCTRPTRDLMTLLQKDYLEI-AKKEGKEVPYTSKDIKT 298
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
C+K I +D T + +++ + AGHVLG+A+ + +G+ + YTGD R
Sbjct: 299 CVKHTIPIDYGVTTDISPTIKLTLHNAGHVLGSAIAHLHIGEGLYNLAYTGDIKFETSRL 358
Query: 186 LGAARIDRLQLDLLITE 202
L A +L+ LI E
Sbjct: 359 LEPAVCQFPRLETLIIE 375
>gi|169598186|ref|XP_001792516.1| hypothetical protein SNOG_01891 [Phaeosphaeria nodorum SN15]
gi|111068983|gb|EAT90103.1| hypothetical protein SNOG_01891 [Phaeosphaeria nodorum SN15]
Length = 833
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 105/190 (55%), Gaps = 11/190 (5%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
L LG G EVG+SC ++ GK +M D GMH AY P + S +D ++I
Sbjct: 27 LCLGGGNEVGRSCHIIQYKGKTVMLDAGMHPAYEGLSAMPFYDEFDLST-----VDVLLI 81
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---LVDRRGEVEQFT- 121
+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V +++ +T
Sbjct: 82 SHFHVDHAASLPYVLAKTNFKGRVFMTHPTKAIYKWLIQDSVRVGNMSSSSETKIQMYTE 141
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+DH+ + A+D T V ++I Y AGHVLGAAMF ++ +++TGDY+
Sbjct: 142 ADHL-NTFPMIEAIDFYTTHTVS-GVRITPYPAGHVLGAAMFLMEIAGLKILFTGDYSRE 199
Query: 182 PDRHLGAARI 191
DRHL +A +
Sbjct: 200 DDRHLVSASV 209
>gi|156083689|ref|XP_001609328.1| cleavage and polyadenylation specifity factor [Babesia bovis T2Bo]
gi|154796579|gb|EDO05760.1| cleavage and polyadenylation specifity factor [Babesia bovis]
Length = 709
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 110/224 (49%), Gaps = 34/224 (15%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
VLGAG EVG+SCV +MFDCG+H A + P F I S +D +IT
Sbjct: 22 VLGAGCEVGRSCVFAERGKHNVMFDCGLHPALSGVGALPVFEAIDLS-----KVDLCLIT 76
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYR--------KVLVDR----- 113
HFHLDH GA+P+ + G I+MTY T+A+ ++ DY K + DR
Sbjct: 77 HFHLDHCGAVPYLLSKTSFKGRIFMTYATKAICHLLWTDYARMEQLQTVKSIFDRTAPRD 136
Query: 114 --------RGEVEQ-------FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVL 158
G +++ ++ D + + K+ +D + V ++ Y AGHVL
Sbjct: 137 LQDGSDSKEGLMDELICGSGLYSFDDVEYALSKIETIDFHEEKDV-GGIKFSCYRAGHVL 195
Query: 159 GAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
GA+MF ++ ++YTGDY+ DRH+ A I + LLI E
Sbjct: 196 GASMFLVEMDGVRILYTGDYSTEVDRHVPCAEIPPINAHLLICE 239
>gi|374636367|ref|ZP_09707940.1| KH-domain/beta-lactamase-domain protein [Methanotorris formicicus
Mc-S-70]
gi|373559249|gb|EHP85554.1| KH-domain/beta-lactamase-domain protein [Methanotorris formicicus
Mc-S-70]
Length = 635
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 105/197 (53%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++C+ + RI+ DCG+++A R YP F S + ID +VITH
Sbjct: 185 LGGAREVGRTCLYLQTPDSRILIDCGINIAVEGDRAYPHFDAPEFSIE---GIDAVVITH 241
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P GY+GP+Y T PTR L ++ +DY + ++ G+ + S I
Sbjct: 242 AHLDHCGFVPGLFRY-GYDGPVYCTRPTRDLMTLLFKDYLDI-AEKEGKDVPYASKDIKT 299
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
C+K + +D T + +++ + AGH+LG+A+ + +GD + YTGD R
Sbjct: 300 CVKHTMPIDYGVTTDITPTIKLTLHNAGHILGSAIAHCHIGDGQYNIAYTGDIKFEASRL 359
Query: 186 LGAARIDRLQLDLLITE 202
L A +L+ LI E
Sbjct: 360 LEPAVCQFPRLETLIIE 376
>gi|402217247|gb|EJT97328.1| Metallo-hydrolase/oxidoreductase [Dacryopinax sp. DJM-731 SS1]
Length = 780
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 107/205 (52%), Gaps = 10/205 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
+ +LGAGQEVG+SC V+ G ++ D G+H A++ P + S +D
Sbjct: 10 LSITLLGAGQEVGRSCCVIQHAGITVVCDAGVHPAFHGMAALPFIDDLDWST-----VDA 64
Query: 63 IVITHFHLDHIGALPFFTEICGYN---GPIYMTYPTRALAPIMLEDY-RKVLVDRRGEVE 118
++ITHFHLDH +L + E + G +YMT+PT+A+ +M++DY R
Sbjct: 65 LLITHFHLDHAASLTYIMEKTNFKDGKGKVYMTHPTKAVYRLMMQDYVRMSAAQSTSAPP 124
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDY 178
FT ++ + + AV T V L Y AGHVLGA+MF ++ D ++YTGDY
Sbjct: 125 LFTPLDLSITLPLINAVSFATTTTVIPGLSFTPYPAGHVLGASMFLIQLADLRILYTGDY 184
Query: 179 NMTPDRHLGAARIDR-LQLDLLITE 202
+ RHL A + +D+LI E
Sbjct: 185 SREESRHLVRAEVPPGAGIDVLIIE 209
>gi|212533753|ref|XP_002147033.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces marneffei ATCC 18224]
gi|210072397|gb|EEA26486.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces marneffei ATCC 18224]
Length = 866
Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 109/201 (54%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A P F S +D ++++H
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDEFDLST-----VDILLLSH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS----- 122
FH+DH ALP+ + G + T+ T+A+ +++D +V + +Q TS
Sbjct: 85 FHVDHSSALPYVLSKTNFKGRVLTTHATKAIYKWLIQDNVRV-SNTSSSSDQRTSLYTEH 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + +D T ++ +++ Y AGHVLGAAMF + +++TGDY+
Sbjct: 144 DHLS-TLPLIETIDFYTTHTINS-IRVTPYPAGHVLGAAMFLVSIAGLNILFTGDYSREE 201
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL A + R +++D+LITE
Sbjct: 202 DRHLIPAEVPRGIKIDVLITE 222
>gi|261402298|ref|YP_003246522.1| KH-domain/beta-lactamase-domain-containing protein
[Methanocaldococcus vulcanius M7]
gi|261369291|gb|ACX72040.1| KH-domain/beta-lactamase-domain protein [Methanocaldococcus
vulcanius M7]
Length = 634
Score = 117 bits (292), Expect = 4e-24, Method: Composition-based stats.
Identities = 66/197 (33%), Positives = 107/197 (54%), Gaps = 8/197 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC+ V R++ DCG+++A D + +P F S + +D ++ITH
Sbjct: 185 LGGAREVGRSCLYVQTPDTRVLIDCGINVACED-KAFPHFDAPEFSIE---DLDAVIITH 240
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P GY+GP+Y T PTR L ++ +DY ++ + G+ ++S I
Sbjct: 241 AHLDHCGFVPGLFRY-GYDGPVYCTRPTRDLMTLLQKDYLEI-AKKEGKEVPYSSKDIKT 298
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
C+K I +D T + +++ + AGHVLG+A+ + +G+ + YTGD R
Sbjct: 299 CVKHTIPIDYGVTTDISPTIKLTLHNAGHVLGSAIAHLHIGEGLYNLAYTGDIKFETSRL 358
Query: 186 LGAARIDRLQLDLLITE 202
L A +L+ LI E
Sbjct: 359 LEPAVCQFPRLETLIIE 375
>gi|403158620|ref|XP_003319317.2| hypothetical protein PGTG_01491 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166386|gb|EFP74898.2| hypothetical protein PGTG_01491 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 778
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 112/201 (55%), Gaps = 12/201 (5%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC V+ ++ D G+H A++ P I S ++D I+IT
Sbjct: 36 MLGAGQEVGRSCCVIEYKSTTVVCDTGIHPAFSGMAALPFIDEIDWS-----SVDAILIT 90
Query: 67 HFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
HFHLDH +L + E + +G ++MT+PT+A+ +++D+ + + + E F +
Sbjct: 91 HFHLDHAASLTYIMENTNFKEGHGKVFMTHPTKAVYRFLMQDFVR-MSTIGTDSELFNEE 149
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
+ + A+D Q + + L+ +Y AGHVLGAAMF ++ ++YTGDY+ D
Sbjct: 150 QMIASYDSINAIDYHQEISLGC-LRFTSYPAGHVLGAAMFLIEISGIRVLYTGDYSTEED 208
Query: 184 RHLGAARIDRL--QLDLLITE 202
RHL AR+ + D++I E
Sbjct: 209 RHLIPARVPNWNEKPDVMICE 229
>gi|449296201|gb|EMC92221.1| hypothetical protein BAUCODRAFT_569527 [Baudoinia compniacensis
UAMH 10762]
Length = 834
Score = 116 bits (291), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/206 (33%), Positives = 107/206 (51%), Gaps = 15/206 (7%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
+ LG G EVG+SC ++ GK +M D G+H AY+ P + S +D ++I
Sbjct: 29 VALGGGSEVGRSCHIIQYKGKTVMLDAGIHPAYDGLAALPFYDEFDLST-----VDVLLI 83
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV-------LVDRRGEVE 118
THFH+DH+ +LP+ + G +YMT+PT+A+ ++ D +V G V
Sbjct: 84 THFHMDHVASLPYVLAKTPFAGRVYMTHPTKAIYKHLMTDSVRVQNTHTSATSGTDGYVA 143
Query: 119 Q-FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
Q F I M ++ + T + ++ Y AGHVLGA M+ ++ +++TGD
Sbjct: 144 QLFNEQDILTTMPQIQTISFN-TTHIHNGIKFTPYPAGHVLGACMYLIEIAGLNILFTGD 202
Query: 178 YNMTPDRHLGAARIDR-LQLDLLITE 202
Y+ +RHL A I R + +D LITE
Sbjct: 203 YSREDNRHLMPASIPRHVNVDCLITE 228
>gi|327311459|ref|YP_004338356.1| beta-lactamase domain-containing protein [Thermoproteus uzoniensis
768-20]
gi|326947938|gb|AEA13044.1| beta-lactamase domain protein [Thermoproteus uzoniensis 768-20]
Length = 635
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 62/197 (31%), Positives = 112/197 (56%), Gaps = 10/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA EVG+S ++V +++ DCG+ + QY + + + D + ++D +V++H
Sbjct: 180 LGASMEVGRSAILVDTTESKVLLDCGLKPS-----QYEEEFPLLEQVDLD-SLDAVVLSH 233
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
H+DH+G LP+ + GY GP+YMT PT+ L I+L DY + L +R G++ +T I
Sbjct: 234 AHMDHVGCLPYLYKY-GYRGPVYMTDPTKYLTYILLTDYVE-LKEREGQIPPYTKSDIET 291
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
M +I +D ++ + D+++ Y AGH +G+A+ + +G+ ++YTGD+
Sbjct: 292 LMYHIITLDYEEVTDIAPDIKLTLYDAGHEIGSALVHLHIGNGRYNILYTGDFKFGRTNL 351
Query: 186 LGAARIDRLQLDLLITE 202
L A ++++LI E
Sbjct: 352 LNKAVNKFKRVEMLIME 368
>gi|288931295|ref|YP_003435355.1| KH-domain/beta-lactamase-domain protein [Ferroglobus placidus DSM
10642]
gi|288893543|gb|ADC65080.1| KH-domain/beta-lactamase-domain protein [Ferroglobus placidus DSM
10642]
Length = 634
Score = 116 bits (291), Expect = 4e-24, Method: Composition-based stats.
Identities = 65/200 (32%), Positives = 109/200 (54%), Gaps = 14/200 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQY---PDFSRISKSCDFNNAIDCIV 64
LG +EVG+SC ++ +IM DCG++++ + Y P+ + + ++ID +V
Sbjct: 185 LGGSREVGRSCYLLQTPESKIMIDCGVNVSNLNQTPYLYVPEVTPL-------DSIDAVV 237
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
+TH HLDH G +P + GY GPIY+T PTR L ++ D+ V V + G V + S H
Sbjct: 238 VTHAHLDHCGLIPILYKY-GYKGPIYLTQPTRDLMVLLQLDFIDVAV-KEGGVTPYESQH 295
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTP 182
I E +K I +D + D+++ Y AGH+LG+A+ + +G+ + +TGD+
Sbjct: 296 IREALKHTITLDYGVVTDIAPDVRLTFYNAGHILGSAIAHFHIGEGLYNVAFTGDFKFER 355
Query: 183 DRHLGAARIDRLQLDLLITE 202
R A + +L+ L+ E
Sbjct: 356 TRLFDKAETNFPRLEALVME 375
>gi|242778797|ref|XP_002479311.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces stipitatus ATCC 10500]
gi|218722930|gb|EED22348.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Talaromyces stipitatus ATCC 10500]
Length = 861
Score = 116 bits (291), Expect = 5e-24, Method: Composition-based stats.
Identities = 66/201 (32%), Positives = 109/201 (54%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A P F S +D ++++H
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFDEFDLS-----TVDILLLSH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS----- 122
FH+DH ALP+ + G + T+ T+A+ +++D +V + +Q T+
Sbjct: 85 FHVDHSSALPYVLSKTNFKGRVLTTHATKAIYKWLIQDNVRV-SNTSSSSDQRTTLYTEH 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + +D T ++ +++ Y AGHVLGAAMF + +++TGDY+
Sbjct: 144 DHLST-LPLIETIDFYTTHTINS-IRVTPYPAGHVLGAAMFLVSIAGLNILFTGDYSREE 201
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL A + R +++D+LITE
Sbjct: 202 DRHLIPAEVPRGIKIDVLITE 222
>gi|346323812|gb|EGX93410.1| cleavage and polyadenylation specifity factor, 73 kDa subunit,
putative [Cordyceps militaris CM01]
Length = 879
Score = 116 bits (290), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 112/210 (53%), Gaps = 20/210 (9%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P + DF+ + +D ++
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYD------DFDLSTVDVLL 81
Query: 65 IT---------HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRG 115
I+ HFH+DH +LP+ + G ++MT+PT+A+ +++D +V
Sbjct: 82 ISQSELRYPMRHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSAN 141
Query: 116 EVEQ--FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMV 173
+ Q +T ++ A+D T ++I Y AGHVLGAAMF ++ +
Sbjct: 142 QTTQPLYTEQDHLNTFPQIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIF 200
Query: 174 YTGDYNMTPDRHLGAARIDR-LQLDLLITE 202
+TGDY+ DRHL +A + + +++D+LITE
Sbjct: 201 FTGDYSREQDRHLVSAEVPKGVKIDVLITE 230
>gi|150400309|ref|YP_001324076.1| beta-lactamase domain-containing protein [Methanococcus vannielii
SB]
gi|150013012|gb|ABR55464.1| beta-lactamase domain protein [Methanococcus vannielii SB]
Length = 635
Score = 115 bits (289), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++C+ RI+ DCG+++A +D + +P F S D ID +V+TH
Sbjct: 185 LGGSREVGRTCIYHQTPESRILVDCGINIAVDDEKAFPHFDAPEFSID---EIDAVVVTH 241
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P GY+GP+Y T PTR L ++ +DY ++ ++ G+ ++S I
Sbjct: 242 AHLDHCGFIPGLFRY-GYDGPVYCTKPTRDLMTLLQKDYVEI-SEKEGKNVPYSSKDIKN 299
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
+K I +D T + +++ + AGH+LG+A+ + VGD + YTGD R
Sbjct: 300 AIKHTIPLDYGVTTDIAPAIKLTLHNAGHILGSAISHCHVGDGLYNVAYTGDIKFEASRL 359
Query: 186 LGAARIDRLQLDLLITE 202
L A +L+ LI E
Sbjct: 360 LEPATCQFPRLETLIIE 376
>gi|433656047|ref|YP_007299755.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacterium thermosaccharolyticum
M0795]
gi|433294236|gb|AGB20058.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermoanaerobacterium thermosaccharolyticum
M0795]
Length = 820
Score = 115 bits (289), Expect = 8e-24, Method: Composition-based stats.
Identities = 65/196 (33%), Positives = 105/196 (53%), Gaps = 9/196 (4%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G EVG SC +V I+GK I+ DCG+ M+ + PDF I + N +D IVI+H
Sbjct: 7 GGASEVGASCYLVNIDGKNILLDCGIRMS-SSKDNLPDFQLIQE----NGGVDVIVISHA 61
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
H+DHIGALP + I + IYMT+ + L ++L D K++ ++ E+ + H+ E
Sbjct: 62 HMDHIGALPIISRIYP-DAKIYMTHAAKDLTRVLLYDSLKIM-EKEAEIPVYAEIHVREM 119
Query: 129 MKKVIAVDLKQTVQ--VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ ++I T + DL++ Y AGH+ GAA Y + ++ Y+GD++ +
Sbjct: 120 LNRIICYTPGHTFAPFMGTDLKVTLYSAGHIAGAASIYIVGNEGSIFYSGDFSRFRQNTI 179
Query: 187 GAARIDRLQLDLLITE 202
A I +L+ D+ E
Sbjct: 180 EGASIPKLRPDVAFFE 195
>gi|45358257|ref|NP_987814.1| beta-lactamase-like protein [Methanococcus maripaludis S2]
gi|44921014|emb|CAF30250.1| Beta-lactamase-like:KH domain [Methanococcus maripaludis S2]
Length = 635
Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++C+ RI+ DCG+++A D + +P F S + ID +V+TH
Sbjct: 185 LGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIE---EIDAVVVTH 241
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P GY+GP+Y T PTR L ++ +DY + ++ G+ ++S I
Sbjct: 242 AHLDHCGFIPGLFRY-GYDGPVYCTKPTRDLMTLLQKDYVDI-TEKEGKNVPYSSKDIKN 299
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
C+K I +D T + +++ + AGH+LG+A+ + VGD + YTGD R
Sbjct: 300 CIKHTIPLDYGVTTDIAPAIKLTMHNAGHILGSAIAHCHVGDGLYNVAYTGDIKFEASRL 359
Query: 186 LGAARIDRLQLDLLITE 202
L A +L+ LI E
Sbjct: 360 LEPAVCQFPRLETLIIE 376
>gi|336121952|ref|YP_004576727.1| KH-domain/beta-lactamase-domain-containing protein
[Methanothermococcus okinawensis IH1]
gi|334856473|gb|AEH06949.1| KH-domain/beta-lactamase-domain protein [Methanothermococcus
okinawensis IH1]
Length = 635
Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 111/205 (54%), Gaps = 11/205 (5%)
Query: 4 DCLV----LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA 59
DC + LG +EVG++C + RI+ DCG+++A + + +P F S +
Sbjct: 177 DCWIRMSFLGGAREVGRTCNYLQTPESRILIDCGINVAIDGDKAFPHFDAPEFSIE---E 233
Query: 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
ID +VITH HLDH G +P GY+GP+Y + PTR L ++ +DY + ++ G+V
Sbjct: 234 IDAVVITHAHLDHCGFVPGLFRY-GYDGPVYCSKPTRDLMTLLQKDYLDI-AEKEGKVMP 291
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGD 177
++S I +C+K I +D T + +++ + AGH+LG+A+ + +GD + YTGD
Sbjct: 292 YSSKDIKKCVKHTIPIDYGVTTDIAPAIKLTMHNAGHILGSAIAHCHIGDGLYNVAYTGD 351
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
R L A +L+ +I E
Sbjct: 352 IKFEASRLLEPAVCQFPRLETIIIE 376
>gi|340623726|ref|YP_004742179.1| beta-lactamase-like protein [Methanococcus maripaludis X1]
gi|339903994|gb|AEK19436.1| beta-lactamase-like protein [Methanococcus maripaludis X1]
Length = 635
Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++C+ RI+ DCG+++A D + +P F S + ID +V+TH
Sbjct: 185 LGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIE---EIDAVVVTH 241
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P GY+GP+Y T PTR L ++ +DY + ++ G+ ++S I
Sbjct: 242 AHLDHCGFIPGLFRY-GYDGPVYCTKPTRDLMTLLQKDYVDI-TEKEGKNVPYSSKDIKN 299
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
C+K I +D T + +++ + AGH+LG+A+ + VGD + YTGD R
Sbjct: 300 CIKHTIPLDYGVTTDIAPAIKLTMHNAGHILGSAIAHCHVGDGLYNVAYTGDIKFEASRL 359
Query: 186 LGAARIDRLQLDLLITE 202
L A +L+ LI E
Sbjct: 360 LEPAVCQFPRLETLIIE 376
>gi|150403634|ref|YP_001330928.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C7]
gi|150034664|gb|ABR66777.1| beta-lactamase domain protein [Methanococcus maripaludis C7]
Length = 635
Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++C+ RI+ DCG+++A D + +P F S + ID +V+TH
Sbjct: 185 LGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIE---EIDAVVVTH 241
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P GY+GP+Y T PTR L ++ +DY + ++ G+ ++S I
Sbjct: 242 AHLDHCGFIPGLFRY-GYDGPVYCTKPTRDLMTLLQKDYVDI-TEKEGKNVPYSSKDIKN 299
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
C+K I +D T + +++ + AGH+LG+A+ + VGD + YTGD R
Sbjct: 300 CIKHTIPLDYGVTTDIAPAIKLTLHNAGHILGSAIAHCHVGDGLYNVAYTGDIKFEASRL 359
Query: 186 LGAARIDRLQLDLLITE 202
L A +L+ LI E
Sbjct: 360 LEPAVCQFPRLETLIIE 376
>gi|159904583|ref|YP_001548245.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C6]
gi|159886076|gb|ABX01013.1| beta-lactamase domain protein [Methanococcus maripaludis C6]
Length = 635
Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 106/197 (53%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++C+ RI+ DCG+++A D + +P F S + ID +V+TH
Sbjct: 185 LGGSREVGRTCLYHQTPESRILVDCGINIAVEDEKAFPHFDAPEFSIE---EIDAVVVTH 241
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P GY+GP+Y T PTR L ++ +DY + ++ G+ ++S I
Sbjct: 242 AHLDHCGFIPGLFRY-GYDGPVYCTKPTRDLMTLLQKDYVDI-TEKEGKNVPYSSKDIKN 299
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
C+K I +D T + +++ + AGH+LG+A+ + VGD + YTGD R
Sbjct: 300 CIKHTIPLDYGVTTDIAPAIKLTLHNAGHILGSAIAHCHVGDGLYNVAYTGDIKFEASRL 359
Query: 186 LGAARIDRLQLDLLITE 202
L A +L+ LI E
Sbjct: 360 LEPAVCQFPRLETLIIE 376
>gi|167384528|ref|XP_001736991.1| cleavage and polyadenylation specificity factor [Entamoeba dispar
SAW760]
gi|165900409|gb|EDR26730.1| cleavage and polyadenylation specificity factor, putative
[Entamoeba dispar SAW760]
Length = 453
Score = 115 bits (288), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 108/200 (54%), Gaps = 22/200 (11%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPD----FSRISKSCDFNNAIDC 62
V G G+ VG SCVVV I+FDCG YN R PD FSR++ ++ I
Sbjct: 5 VFGGGKSVGSSCVVVEGKEDAILFDCG----YNPVR--PDVGIDFSRMNA---ISSKIRA 55
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
I ITHFH+DH+G LP+ T+ + PIY++ PT+AL ++++D F
Sbjct: 56 ICITHFHVDHVGMLPWLTKF--MDVPIYLSEPTQALLSLIIKDIH-------SGNNLFCQ 106
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+C+ + +D T ++ ++L IR YAGH LGA M+ + +VY+GD++++P
Sbjct: 107 ADFDKCISQCKPIDPTMTKRITQNLSIRCIYAGHALGAVMYEILLDGKRIVYSGDFDVSP 166
Query: 183 DRHLGAARIDRLQLDLLITE 202
L A+I +D LITE
Sbjct: 167 SFLLKGAQITSHAIDYLITE 186
>gi|170291024|ref|YP_001737840.1| beta-lactamase domain-containing protein [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175104|gb|ACB08157.1| beta-lactamase domain protein [Candidatus Korarchaeum cryptofilum
OPF8]
Length = 624
Score = 115 bits (288), Expect = 9e-24, Method: Composition-based stats.
Identities = 67/198 (33%), Positives = 109/198 (55%), Gaps = 13/198 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA +EVG+S V++T + ++ DCG+ ++ +P I + +D ++ITH
Sbjct: 180 LGAAREVGRSSVLITTDESNVLLDCGISLS--SRSAFPRLDLIDI-----DELDAVIITH 232
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH GALP + GY GP+Y+T PTR L ++L DY L R G + F+ +
Sbjct: 233 AHLDHSGALPLLFKY-GYRGPVYLTRPTRDLMMLLLYDYIN-LSQRVGSIPFFSWRDVVN 290
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA---MVYTGDYNMTPDR 184
M I +D +TV + D+++ Y AGH+LG+A+ + + +SA ++YTGD+ +
Sbjct: 291 MMNHTITLDYTETVDISPDIKLTFYNAGHILGSALAHLNI-ESARHNVLYTGDFRFRDTK 349
Query: 185 HLGAARIDRLQLDLLITE 202
L A +++ LI E
Sbjct: 350 LLDKAVRKFPRVETLIME 367
>gi|340386286|ref|XP_003391639.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like, partial [Amphimedon queenslandica]
Length = 181
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/160 (39%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ K+IM DCG+H + P I ++ ID ++ITH
Sbjct: 25 LGAGQEVGRSCIMLEFKNKKIMLDCGIHPGLSGMDALPYTDMIE-----SDEIDLLLITH 79
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F E + G ++MT T+A+ +L DY KV + + +T + +
Sbjct: 80 FHLDHCGALPWFLEKTTFKGRVFMTPATKAIYRWLLSDYIKV-SNISSDHMLYTEKDLEK 138
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKV 167
M K+ ++ Q V V ++ AY AGHVLGAAMF ++
Sbjct: 139 SMDKIEIINFHQEVDV-SGIKFTAYNAGHVLGAAMFMIEI 177
>gi|390354408|ref|XP_796109.3| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Strongylocentrotus purpuratus]
Length = 457
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 100/183 (54%), Gaps = 7/183 (3%)
Query: 20 VVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFF 79
++ GK+IM DCG+H P F I ID ++++HFHLDH G LP+F
Sbjct: 1 MLEFKGKKIMLDCGIHPGREGMDSLPYFDLIDPE-----EIDLLLVSHFHLDHCGGLPYF 55
Query: 80 TEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQ 139
+ + G ++MT+ ++A+ L DY KV + E +T + M ++ V+ Q
Sbjct: 56 LKNTQFRGRVFMTHASKAIYRWNLSDYVKV-SNLSAERMLYTDADLQASMDRIETVNFHQ 114
Query: 140 TVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLL 199
V ++ ++ Y+AGHVLGA MF ++ ++YTGD++ DRHL A I ++ D+L
Sbjct: 115 EVDING-IRFSCYHAGHVLGACMFLIEIAGVKILYTGDFSRQEDRHLMQAEIPNVKPDIL 173
Query: 200 ITE 202
ITE
Sbjct: 174 ITE 176
>gi|452985743|gb|EME85499.1| hypothetical protein MYCFIDRAFT_130659 [Pseudocercospora fijiensis
CIRAD86]
Length = 844
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 68/208 (32%), Positives = 103/208 (49%), Gaps = 17/208 (8%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
L LG G EVG+SC ++ GK +M D G+H +Y P + S +D ++I
Sbjct: 29 LALGGGNEVGRSCHIIQYKGKTVMLDAGIHPSYEGLGALPFYDEFDLS-----TVDLLLI 83
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRR---------GE 116
THFH DH +LP+ + G +YMT+PT+A+ +D +V G
Sbjct: 84 THFHQDHSASLPYVLSKTNFAGRVYMTHPTKAIYKWTTQDAVRVHNTHTPASSSSGTDGY 143
Query: 117 VEQ-FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYT 175
V Q +T I M + + T ++ Y AGHVLGA M+ ++ +++T
Sbjct: 144 VSQLYTEQDILSTMPMIQTISF-HTTHSHNGIRFTPYPAGHVLGACMYLIEIAGLNILFT 202
Query: 176 GDYNMTPDRHLGAARIDR-LQLDLLITE 202
GDY+ DRHL A + R +++D LITE
Sbjct: 203 GDYSRETDRHLIPATVPRNVKVDCLITE 230
>gi|344232758|gb|EGV64631.1| Metallo-hydrolase/oxidoreductase [Candida tenuis ATCC 10573]
Length = 782
Score = 115 bits (288), Expect = 1e-23, Method: Composition-based stats.
Identities = 60/205 (29%), Positives = 107/205 (52%), Gaps = 16/205 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM D G+H + P + S +D ++++H
Sbjct: 15 LGGCNEVGRSCHIIEYKNKVIMLDAGVHPGLSGLNSLPFYDEYDLS-----KVDLLLVSH 69
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRG----------EV 117
FHLDH +LP+ + + G ++MT+ T+A+ +L D+ +V
Sbjct: 70 FHLDHAASLPYVMQHTNFRGRVFMTHATKAIYRWLLTDFVRVTSLSSNTSNDPNSGGTSA 129
Query: 118 EQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
+T + + + ++ VD T+++D ++ AY+AGHVLGA ++ ++G ++TGD
Sbjct: 130 NLYTDEDLMKSFDRIETVDFHSTMELD-GIRFTAYHAGHVLGACLYLIEIGGLKALFTGD 188
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
Y+ +RHL A + ++ D+LITE
Sbjct: 189 YSREENRHLPVAEVPSVKPDILITE 213
>gi|327401049|ref|YP_004341888.1| KH-domain/beta-lactamase-domain-containing protein [Archaeoglobus
veneficus SNP6]
gi|327316557|gb|AEA47173.1| KH-domain/beta-lactamase-domain protein [Archaeoglobus veneficus
SNP6]
Length = 634
Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats.
Identities = 66/200 (33%), Positives = 107/200 (53%), Gaps = 14/200 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQY---PDFSRISKSCDFNNAIDCIV 64
LG +EVG+SC ++ +I+ DCG++++ H Y P+ + ++ID +V
Sbjct: 185 LGGSREVGRSCYLLQTPESKILIDCGVNVSNIQHSPYLYVPEVQPL-------DSIDAVV 237
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
ITH HLDH G +P + GY GPIYMT PTR L ++ D+ +V R G + S +
Sbjct: 238 ITHAHLDHCGLVPILYKY-GYKGPIYMTPPTRDLMVLLQLDFIEVAA-REGTPTPYESSY 295
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTP 182
I E +K I +D + D+++ Y AGH+LG+A+ + +G+ + +TGD+
Sbjct: 296 IREALKHTIPLDYGVVTDISPDVRLTFYNAGHILGSAIAHFHIGEGLYNIAFTGDFKFER 355
Query: 183 DRHLGAARIDRLQLDLLITE 202
R A + +L+ LI E
Sbjct: 356 TRLFDRAETNFPRLEALIME 375
>gi|255957115|ref|XP_002569310.1| Pc21g23430 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591021|emb|CAP97240.1| Pc21g23430 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 862
Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 107/201 (53%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A P F S +D ++I+H
Sbjct: 30 LGGGNEVGRSCHILEYKGKTVMLDAGMHPAKEGFSALPFFDEFDLST-----VDVLLISH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS----- 122
FH+DH ALP+ + G ++MT TRA+ +++D +V + +Q T+
Sbjct: 85 FHVDHSSALPYVLSKTNFKGRVFMTPATRAIYKWLIQDNVRV-SNTSSSSDQRTTLYTER 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + +D T ++ ++I Y AGHVLGAAMF + ++TGDY+
Sbjct: 144 DHLS-TLPMIETIDFYTTHTIN-GIRITPYPAGHVLGAAMFKIDIAGLVTLFTGDYSREE 201
Query: 183 DRHL-GAARIDRLQLDLLITE 202
DRHL AA ++D+LITE
Sbjct: 202 DRHLIPAAVPSGTKIDVLITE 222
>gi|425780830|gb|EKV18826.1| Endoribonuclease ysh1 [Penicillium digitatum PHI26]
gi|425783067|gb|EKV20936.1| Endoribonuclease ysh1 [Penicillium digitatum Pd1]
Length = 862
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 107/201 (53%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A P F S +D ++I+H
Sbjct: 30 LGGGNEVGRSCHILEYKGKTVMLDAGMHPAKEGFSALPFFDEFDLST-----VDVLLISH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS----- 122
FH+DH ALP+ + G ++MT TRA+ +++D +V + +Q T+
Sbjct: 85 FHVDHSSALPYVLSKTNFKGRVFMTPATRAIYKWLIQDNVRV-SNTSSSSDQRTTLYTER 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + +D T ++ ++I Y AGHVLGAAMF + ++TGDY+
Sbjct: 144 DHLS-TLPLIETIDFYTTHTIN-GIRITPYPAGHVLGAAMFKIDIAGLVTLFTGDYSREE 201
Query: 183 DRHL-GAARIDRLQLDLLITE 202
DRHL AA ++D+LITE
Sbjct: 202 DRHLIPAAVPSGTKIDVLITE 222
>gi|134045919|ref|YP_001097405.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C5]
gi|132663544|gb|ABO35190.1| beta-lactamase domain protein [Methanococcus maripaludis C5]
Length = 635
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 107/197 (54%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++C+ RI+ DCG+++A +D + +P F S + ID +V+TH
Sbjct: 185 LGGSREVGRTCLYHQTPESRILVDCGINIAVDDEKAFPHFDAPEFSIE---EIDAVVVTH 241
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P GY+GP+Y T PTR L ++ +DY + ++ G+ ++S I
Sbjct: 242 AHLDHCGFIPGLFRY-GYDGPVYCTKPTRDLMTLLQKDYVDI-TEKEGKNVPYSSKDIKN 299
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
C+K I +D T + +++ + AGH+LG+A+ + VG+ + YTGD R
Sbjct: 300 CIKHTIPLDYGVTTDIAPAIKLTLHNAGHILGSAIAHCHVGEGLYNVAYTGDIKFEASRL 359
Query: 186 LGAARIDRLQLDLLITE 202
L A +L+ LI E
Sbjct: 360 LEPAVCQFPRLETLIIE 376
>gi|18312205|ref|NP_558872.1| mRNA 3'-end processing factor [Pyrobaculum aerophilum str. IM2]
gi|18159643|gb|AAL63054.1| mRNA 3'-end processing factor, conjectural [Pyrobaculum aerophilum
str. IM2]
Length = 634
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 111/202 (54%), Gaps = 10/202 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGA EVG+S ++V+ ++ DCG+ A ND ++P I D + +D
Sbjct: 174 ITVTFLGAAMEVGRSAILVSTTESNVLLDCGLKPAQNDE-EFPLLDLI----DIDR-LDA 227
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+V+TH H+DH+G LPF + GY GP+YMT PT+ A I+L DY + L +R G ++
Sbjct: 228 VVLTHAHMDHVGCLPFLFK-YGYKGPVYMTDPTKYQAFILLSDYVE-LKEREGLQPSYSK 285
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNM 180
I + I +D ++ + D+++ Y AGH +G+AM + +G+ ++YTGD+
Sbjct: 286 ADIETVIYHTITLDYEEVTDIAPDIKLTFYDAGHEIGSAMAHLHIGNGRYNILYTGDFKY 345
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
R L A ++++LI E
Sbjct: 346 GKTRLLNRAANKFKRVEMLIME 367
>gi|15679214|ref|NP_276331.1| cleavage and polyadenylation specificity factor
[Methanothermobacter thermautotrophicus str. Delta H]
gi|333944120|pdb|2YCB|A Chain A, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
gi|333944121|pdb|2YCB|B Chain B, Structure Of The Archaeal Beta-Casp Protein With
N-Terminal Kh Domains From Methanothermobacter
Thermautotrophicus
gi|2622312|gb|AAB85692.1| cleavage and polyadenylation specificity factor
[Methanothermobacter thermautotrophicus str. Delta H]
Length = 636
Score = 114 bits (285), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 109/198 (55%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQ-YPDFSRISKSCDFNNAIDCIVIT 66
+G +EVG+SC+ + R++ DCG+++A D + YP + + D ++D ++IT
Sbjct: 185 MGGFREVGRSCLYLQTPNSRVLLDCGVNVAGGDDKNSYPYLNVPEFTLD---SLDAVIIT 241
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH G LP+ GY+GP+Y T PTR L ++ D+ + R E F H+
Sbjct: 242 HAHLDHSGFLPYLYH-YGYDGPVYCTAPTRDLMTLLQLDHIDI-AHREDEPLPFNVKHVK 299
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
+ +K I +D + + D+++ + AGH+LG+AM + +GD MVYTGD+ R
Sbjct: 300 KSVKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAMAHLHIGDGQHNMVYTGDFKYEQSR 359
Query: 185 HLGAARIDRLQLDLLITE 202
L AA +++ L+ E
Sbjct: 360 LLEAAANRFPRIETLVME 377
>gi|67475897|ref|XP_653580.1| metallo-beta-lactamase family protein [Entamoeba histolytica
HM-1:IMSS]
gi|56470550|gb|EAL48194.1| metallo-beta-lactamase family protein [Entamoeba histolytica
HM-1:IMSS]
gi|449710060|gb|EMD49202.1| cleavage and polyadenylation specificity factor, putative
[Entamoeba histolytica KU27]
Length = 452
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/200 (36%), Positives = 106/200 (53%), Gaps = 22/200 (11%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPD----FSRISKSCDFNNAIDC 62
V G G+ VG SCVVV I+FDCG YN R PD FSR++ ++ I
Sbjct: 5 VFGGGKSVGSSCVVVEGKEDAILFDCG----YNPVR--PDVGIDFSRMNA---ISSKIRA 55
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
I ITHFH+DH+G LP+ T+ + PIY++ PT+AL +++ D F
Sbjct: 56 ICITHFHVDHVGMLPWLTKF--MDVPIYLSEPTQALLSLIINDIH-------SGNNLFCQ 106
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+C+ + +D T +V ++L IR YAGH LGA M+ + +VY+GD++++P
Sbjct: 107 ADFDKCILQCKPIDPTMTKRVTQNLSIRCIYAGHALGAVMYEILLDGKRIVYSGDFDVSP 166
Query: 183 DRHLGAARIDRLQLDLLITE 202
L A I +D LITE
Sbjct: 167 SFLLRGAEITSHAIDYLITE 186
>gi|297545551|ref|YP_003677853.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
gi|296843326|gb|ADH61842.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 829
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 63/196 (32%), Positives = 106/196 (54%), Gaps = 9/196 (4%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G EVG SC ++ ++GK I+ DCG+ M+ + PDF I + + +D I+++H
Sbjct: 7 GGANEVGASCYLINLDGKNILLDCGIRMS-STKDNLPDFRLIQE----HGGVDAIIVSHA 61
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP + + IYMT+ T+ L ++L D K++ +R E+ + +H+ +
Sbjct: 62 HLDHTGALPIISRMYP-QAKIYMTHATKDLTRVLLYDSLKIM-ERESEIPIYAENHVKDM 119
Query: 129 MKKVIAVDLKQTVQVDKDLQIRA--YYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ +V+ T D QI+ Y AGH+LGAA Y + ++ Y+GD++ +
Sbjct: 120 LDRVLCYTPGYTFTPFPDSQIKVTLYPAGHILGAASVYITSAEGSIFYSGDFSGFRQNTI 179
Query: 187 GAARIDRLQLDLLITE 202
A I +L+ D+ I E
Sbjct: 180 EGAFIPKLRPDVAIFE 195
>gi|353239750|emb|CCA71648.1| related to YSH1-component of pre-mRNA polyadenylation factor PF I
[Piriformospora indica DSM 11827]
Length = 756
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/203 (33%), Positives = 104/203 (51%), Gaps = 10/203 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
+ VLGAGQEVG+SC V+ GK ++ D G+H A+ P + S +D
Sbjct: 6 LSVTVLGAGQEVGRSCCVLRYRGKTVVCDAGVHPAHYGIASLPFIDELDWST-----VDV 60
Query: 63 IVITHFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
I+ITHFHLDH L + E + G +YMT T+A+ +++D+ ++ +
Sbjct: 61 ILITHFHLDHAAGLTYIMEKTNFREGKGKVYMTLATKAVYKFIMQDFLRMSSSSTEPL-- 118
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
F+ + +I V Q + + Y+AGHVLGA MF + ++YTGDY+
Sbjct: 119 FSPLDFSMSFSSIITVAAHQVIVPCPGISFTPYHAGHVLGACMFLIDIAGLKVLYTGDYS 178
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
DRHL A++ ++ D+LI E
Sbjct: 179 REEDRHLVQAQVPSIRPDVLICE 201
>gi|352683091|ref|YP_004893615.1| mRNA 3'-end processing factor [Thermoproteus tenax Kra 1]
gi|350275890|emb|CCC82537.1| mRNA 3'-end processing factor [Thermoproteus tenax Kra 1]
Length = 635
Score = 114 bits (284), Expect = 3e-23, Method: Composition-based stats.
Identities = 65/203 (32%), Positives = 110/203 (54%), Gaps = 10/203 (4%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
AI LGA EVG+S ++V +I+ DCG+ + QY + + + D + +D
Sbjct: 174 AITISFLGASMEVGRSAILVDTTESKILLDCGLKPS-----QYEEEFPLLEQVDLDE-LD 227
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
+V++H H+DH+G LP+ + GY GP+YMT PT+ L I+L DY + L +R G +T
Sbjct: 228 AVVLSHAHMDHVGCLPYLYKY-GYKGPVYMTDPTKYLTYILLTDYVE-LKEREGLTPPYT 285
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYN 179
I M I +D ++ + D+++ Y AGH +G+A+ + +G+ ++YTGD+
Sbjct: 286 KSDIEALMYHTITLDYEEVTDIAPDVKLTFYDAGHEIGSALIHLHIGNGRYNILYTGDFK 345
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
L A ++++LI E
Sbjct: 346 FGRTNLLNRAVNKFKRVEMLIME 368
>gi|407039671|gb|EKE39761.1| metallo-beta-lactamase family protein [Entamoeba nuttalli P19]
Length = 452
Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 72/200 (36%), Positives = 106/200 (53%), Gaps = 22/200 (11%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPD----FSRISKSCDFNNAIDC 62
V G G+ VG SCVVV I+FDCG YN R PD FSR++ ++ +
Sbjct: 5 VFGGGKSVGSSCVVVEGKEDAILFDCG----YNPVR--PDVGIDFSRMNA---ISSKVRA 55
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
I ITHFH+DH+G LP+ T+ + PIY++ PT+AL +++ D F
Sbjct: 56 ICITHFHVDHVGMLPWLTKF--MDVPIYLSEPTQALLSLIINDIH-------SGNNLFCQ 106
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+C+ + +D T +V ++L IR YAGH LGA M+ + +VY+GD++++P
Sbjct: 107 ADFDKCILQCKPIDPTMTKRVTQNLSIRCIYAGHALGAVMYEVLLDGKRIVYSGDFDVSP 166
Query: 183 DRHLGAARIDRLQLDLLITE 202
L A I +D LITE
Sbjct: 167 SFLLRGAEITSHAIDYLITE 186
>gi|242220452|ref|XP_002475992.1| predicted protein [Postia placenta Mad-698-R]
gi|220724781|gb|EED78801.1| predicted protein [Postia placenta Mad-698-R]
Length = 825
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 68/199 (34%), Positives = 101/199 (50%), Gaps = 19/199 (9%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQE GK I+ D G+H AY+ P + S +D ++IT
Sbjct: 11 LLGAGQEY---------RGKTIVCDAGVHPAYSGIASLPFVDELDWS-----TVDVLLIT 56
Query: 67 HFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
HFHLDH AL + TE + G +YMT+PT+AL M++D+ ++ + F+
Sbjct: 57 HFHLDHAAALTYITEKTNFRDGKGKVYMTHPTKALHKFMMQDFVRMSSSTSDAL--FSPL 114
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
I + +I V Q + + Y+AGHVLGA MF + ++YTGDY+ D
Sbjct: 115 DIQMSLSSIIPVSAHQVITPCPGVTFTPYHAGHVLGACMFLIDIAGLKILYTGDYSREED 174
Query: 184 RHLGAARIDRLQLDLLITE 202
RHL A + ++ D+LI E
Sbjct: 175 RHLVKAEVPPIRPDVLIIE 193
>gi|410672076|ref|YP_006924447.1| beta-lactamase-like protein [Methanolobus psychrophilus R15]
gi|409171204|gb|AFV25079.1| beta-lactamase-like protein [Methanolobus psychrophilus R15]
Length = 636
Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats.
Identities = 61/184 (33%), Positives = 105/184 (57%), Gaps = 7/184 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC +++ RIM DCG+++A +D+ + + ++ N ID +V+TH
Sbjct: 186 LGGAKEVGRSCFIISTPESRIMVDCGVNVASDDNMT--PYLYVPEAFPINQ-IDAVVLTH 242
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P + G+ GP+Y T PTR L ++ DY V + G+ ++S + E
Sbjct: 243 AHLDHQGLVPLLYKY-GFEGPVYCTPPTRDLMALLQLDYIDVAA-KEGKRPPYSSADVRE 300
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I +D ++ + D+++ + AGH+LG+A+ + +GD +V+TGD+ R
Sbjct: 301 VLKHTIVLDYEEVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLHNVVFTGDFKYEKTRL 360
Query: 186 LGAA 189
AA
Sbjct: 361 FDAA 364
>gi|340501262|gb|EGR28065.1| hypothetical protein IMG5_183890 [Ichthyophthirius multifiliis]
Length = 685
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 59/162 (36%), Positives = 89/162 (54%), Gaps = 9/162 (5%)
Query: 30 FDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPI 89
FDCG+HM + Q P F ++ + ID I ITHFHLDH ALP+ T + G +
Sbjct: 296 FDCGLHMGKQGYEQLPLFDKVK-----TDKIDIIFITHFHLDHCAALPYITSKTNFKGKV 350
Query: 90 YMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQI 149
Y T PTRA+ +L+D + D+ + + D I +K + +D Q ++ D +++
Sbjct: 351 YATSPTRAIYKHVLKDSTR---DKSDNITLYKVDDIERSLKFIEVIDFHQEMEHD-NIKF 406
Query: 150 RAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARI 191
+ Y AGHVLGAAMF ++ ++YTGDY+ D + A I
Sbjct: 407 KCYPAGHVLGAAMFLVEIEGVRVLYTGDYSTEKDILIQPAEI 448
>gi|171184545|ref|YP_001793464.1| beta-lactamase domain-containing protein [Pyrobaculum neutrophilum
V24Sta]
gi|170933757|gb|ACB39018.1| beta-lactamase domain protein [Pyrobaculum neutrophilum V24Sta]
Length = 634
Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats.
Identities = 67/203 (33%), Positives = 110/203 (54%), Gaps = 10/203 (4%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
AI LGA EVG+S ++V+ ++ DCG+ D DF + + D + +D
Sbjct: 173 AITVTFLGAAMEVGRSAILVSTTESNVLLDCGLKPGQYDE----DFPMLD-AVDIDR-LD 226
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
+V+TH H+DH+G LPF + GY GP+YMT PT+ A I+L DY + L +R G F+
Sbjct: 227 AVVLTHAHMDHVGCLPFLYKY-GYRGPVYMTDPTKYQAFILLMDYIE-LKEREGLEPAFS 284
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYN 179
+ + I +D ++ + D+++ Y AGH +G+AM + +G+ ++YTGD+
Sbjct: 285 KADVESVIYHTITLDYEEVTDIAPDVKLTFYDAGHEIGSAMAHLHIGNGRYNILYTGDFK 344
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
R L A ++++LI E
Sbjct: 345 YGKTRLLNRAVSKFKRVEMLIME 367
>gi|289579410|ref|YP_003478037.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
italicus Ab9]
gi|289529123|gb|ADD03475.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
italicus Ab9]
Length = 829
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 106/196 (54%), Gaps = 9/196 (4%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G EVG SC ++ ++GK I+ DCG+ M+ + PDF I + + +D ++++H
Sbjct: 7 GGANEVGASCYLINLDGKNILLDCGIRMS-STKDNLPDFRLIQE----HGGVDAVIVSHA 61
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP + + IYMT+ T+ L ++L D K++ +R E+ + +H+ +
Sbjct: 62 HLDHTGALPIISRMYP-QAKIYMTHATKDLTRVLLYDSLKIM-ERESEIPIYAENHVKDM 119
Query: 129 MKKVIAVDLKQTVQVDKDLQIRA--YYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ +V+ T D QI+ Y AGH+LGAA Y + ++ Y+GD++ +
Sbjct: 120 LDRVLCYTPGYTFTPFPDSQIKVTLYPAGHILGAASVYITSAEGSIFYSGDFSGFRQNTI 179
Query: 187 GAARIDRLQLDLLITE 202
A I +L+ D+ I E
Sbjct: 180 EGAFIPKLRPDVAIFE 195
>gi|297619164|ref|YP_003707269.1| KH-domain/beta-lactamase-domain-containing protein [Methanococcus
voltae A3]
gi|297378141|gb|ADI36296.1| KH-domain/beta-lactamase-domain protein [Methanococcus voltae A3]
Length = 635
Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 108/205 (52%), Gaps = 11/205 (5%)
Query: 4 DCLV----LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA 59
DC + LG +EVG++C+ RIM DCG+++ +D + +P F S +
Sbjct: 177 DCWIRTSFLGGSREVGRTCLYHQTPESRIMIDCGINVGMDDEKAFPHFDAPEFSIE---E 233
Query: 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
ID +V+TH HLDH G +P GY+GP+Y T PTR L ++ +DY + ++ G+
Sbjct: 234 IDAVVVTHAHLDHCGFIPGLFRY-GYDGPVYCTKPTRDLMTLLQKDYIDI-AEKEGKPVP 291
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGD 177
+TS + +K I +D T + +++ + AGH+LG+A+ + +GD + YTGD
Sbjct: 292 YTSRDVKNAIKHTIPLDYGVTTDIAPAVKLTLHNAGHILGSAIAHCHIGDGLYNVAYTGD 351
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
R L A +L+ LI E
Sbjct: 352 IKFEASRLLEPAVCQFPRLETLIME 376
>gi|358060736|dbj|GAA93507.1| hypothetical protein E5Q_00148 [Mixia osmundae IAM 14324]
Length = 1378
Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats.
Identities = 58/201 (28%), Positives = 109/201 (54%), Gaps = 17/201 (8%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ ++LGAGQEVG+SC V+ G ++ D G+H AY+ P + + +D
Sbjct: 37 MEVIMLGAGQEVGRSCCVIKYKGVTLVCDAGVHPAYSGMPALPFIDELDW-----DTVDA 91
Query: 63 IVITHFHLDHIGALPFFTEICGYN---GPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
I++THFHLDH LP+ E + G +YMT+ T+ + ++++D+ ++ + + Q
Sbjct: 92 ILVTHFHLDHAAGLPYIMEKTNFKDGGGRVYMTHATKDVYELLMQDFVRISIIEGTDTSQ 151
Query: 120 --FTSDHIAECMKKVIAVDLKQTVQV-------DKDLQIRAYYAGHVLGAAMFYAKVGDS 170
++++ ++ + + + V + ++ +Y AGHVLGA+MF ++G +
Sbjct: 152 RIMDAENLEASLETIQGIRFYEEVTIPISSKRSTTSVRFTSYPAGHVLGASMFLIEIGGA 211
Query: 171 AMVYTGDYNMTPDRHLGAARI 191
++YTGDY+ D HL A +
Sbjct: 212 RVLYTGDYSTEADMHLIPASV 232
>gi|358378169|gb|EHK15851.1| hypothetical protein TRIVIDRAFT_65314 [Trichoderma virens Gv29-8]
Length = 873
Score = 112 bits (281), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 111/216 (51%), Gaps = 27/216 (12%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P + DF+ + +D ++
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYD------DFDLSTVDVLL 81
Query: 65 ITH---------------FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV 109
I+ FH+DH +LP+ + G ++MT+PT+A+ +++D +V
Sbjct: 82 ISQTLHDASSLLLTRGDSFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRV 141
Query: 110 LVDRRGEVEQF--TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKV 167
Q DH+ ++ A+D T ++I Y AGHVLGAAMF ++
Sbjct: 142 GNTASNSATQLYTEQDHL-NTFPQIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEI 199
Query: 168 GDSAMVYTGDYNMTPDRHLGAARIDR-LQLDLLITE 202
+ +TGDY+ DRHL +A + + L++D+LITE
Sbjct: 200 AGLNIFFTGDYSREQDRHLVSAEVPKGLKIDVLITE 235
>gi|213409816|ref|XP_002175678.1| endoribonuclease ysh1 [Schizosaccharomyces japonicus yFS275]
gi|212003725|gb|EEB09385.1| endoribonuclease ysh1 [Schizosaccharomyces japonicus yFS275]
Length = 771
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 59/174 (33%), Positives = 99/174 (56%), Gaps = 9/174 (5%)
Query: 30 FDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPI 89
D G+H AY+ P F S +D ++ITHFHLDH ALP+ + + G +
Sbjct: 17 LDAGIHPAYSGFAALPFFDEFDLS-----TVDILLITHFHLDHAAALPYVMQKTNFRGRV 71
Query: 90 YMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-FTSDHIAECMKKVIAVDLKQTVQVDKDLQ 148
+MT+PT+A+ +L DY V V G +Q + +A +++ AVD T++V+ ++
Sbjct: 72 FMTHPTKAVCKWLLSDY--VRVSNVGVEDQLYDEKDLAAAFERMEAVDYHSTIEVE-GVK 128
Query: 149 IRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
++AGHVLGA M++ ++ ++YTGD++ DRHL A + + ++LI+E
Sbjct: 129 FTPFHAGHVLGACMYFIEIAGVKLLYTGDFSREEDRHLNIAEVPPQKPNILISE 182
>gi|452845681|gb|EME47614.1| hypothetical protein DOTSEDRAFT_146416 [Dothistroma septosporum
NZE10]
Length = 839
Score = 112 bits (281), Expect = 6e-23, Method: Composition-based stats.
Identities = 67/208 (32%), Positives = 104/208 (50%), Gaps = 17/208 (8%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
L LG G EVG+SC +V GK +M D G+H +Y P + S +D ++I
Sbjct: 30 LALGGGNEVGRSCHIVQYKGKTVMLDAGIHPSYEGLGALPFYDEFDLS-----TVDLLLI 84
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---------LVDRRGE 116
THFH DH +LP+ ++G ++MT+PT+A+ +D +V G
Sbjct: 85 THFHQDHSASLPYVLAKTDFHGKVFMTHPTKAIYKWTTQDAVRVHNTHTPASSTSGTDGY 144
Query: 117 VEQ-FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYT 175
V Q +T I + + + T ++ Y AGHVLGA M++ ++ +++T
Sbjct: 145 VSQLYTEQDILSTLPMIQTISF-NTTHSHNGIRFTPYPAGHVLGACMYHIEIAGLNILFT 203
Query: 176 GDYNMTPDRHLGAARI-DRLQLDLLITE 202
GDY+ DRHL A I +++D LITE
Sbjct: 204 GDYSREIDRHLIPATIPPNVKIDCLITE 231
>gi|344257704|gb|EGW13808.1| Cleavage and polyadenylation specificity factor subunit 3
[Cricetulus griseus]
Length = 647
Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 96/174 (55%), Gaps = 7/174 (4%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
M DCG+H P I + ID ++I+HFHLDH GALP+F + + G
Sbjct: 1 MLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISHFHLDHCGALPWFLQKTSFKGR 55
Query: 89 IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQ 148
+MT+ T+A+ +L DY KV + + +T + E M K+ ++ + +V ++
Sbjct: 56 TFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEESMDKIETINFHEVKEV-AGIK 113
Query: 149 IRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
Y+AGHVLGAAMF ++ ++YTGD++ DRHL AA I ++ D+LI E
Sbjct: 114 FWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIE 167
>gi|119621395|gb|EAX00990.1| cleavage and polyadenylation specific factor 3, 73kDa, isoform
CRA_b [Homo sapiens]
Length = 647
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 96/174 (55%), Gaps = 7/174 (4%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
M DCG+H P I + ID ++I+HFHLDH GALP+F + + G
Sbjct: 1 MLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISHFHLDHCGALPWFLQKTSFKGR 55
Query: 89 IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQ 148
+MT+ T+A+ +L DY KV + + +T + E M K+ ++ + +V ++
Sbjct: 56 TFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEESMDKIETINFHEVKEV-AGIK 113
Query: 149 IRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
Y+AGHVLGAAMF ++ ++YTGD++ DRHL AA I ++ D+LI E
Sbjct: 114 FWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIE 167
>gi|197102904|ref|NP_001127045.1| cleavage and polyadenylation specificity factor subunit 3 [Pongo
abelii]
gi|55733623|emb|CAH93488.1| hypothetical protein [Pongo abelii]
Length = 647
Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 96/174 (55%), Gaps = 7/174 (4%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
M DCG+H P I + ID ++I+HFHLDH GALP+F + + G
Sbjct: 1 MLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISHFHLDHCGALPWFLQKTSFKGR 55
Query: 89 IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQ 148
+MT+ T+A+ +L DY KV + + +T + E M K+ ++ + +V ++
Sbjct: 56 TFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEESMDKIETINFHEVKEV-AGIK 113
Query: 149 IRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
Y+AGHVLGAAMF ++ ++YTGD++ DRHL AA I ++ D+LI E
Sbjct: 114 FWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIE 167
>gi|440783043|ref|ZP_20960854.1| metal-dependent RNase [Clostridium pasteurianum DSM 525]
gi|440219618|gb|ELP58829.1| metal-dependent RNase [Clostridium pasteurianum DSM 525]
Length = 828
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 54/195 (27%), Positives = 108/195 (55%), Gaps = 6/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG SC++++++ K I+ DCG+ + + PDF I +D I+I+H
Sbjct: 6 LGGANEVGGSCILISVSNKNILLDCGIRQS-SSKDPLPDFKTIQD----KGGLDAIIISH 60
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
H+DHIG+LP ++ + IY T T+ L ++L D K++ +R E+ + +
Sbjct: 61 AHMDHIGSLPIISKEYPF-AKIYTTIMTKDLMKVLLYDSLKIMNNRELEIPLYAEADVEN 119
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M +++A++ + +++ K +++ + AGH+ GAA Y + + Y+GD+++ + +
Sbjct: 120 MMNRIVAINYMREIEILKGIKLTFHIAGHIAGAACSYIISNEGTIFYSGDFSIFSQKTID 179
Query: 188 AARIDRLQLDLLITE 202
++ +L+ D+ I E
Sbjct: 180 GLKVPKLRPDVAIFE 194
>gi|385806123|ref|YP_005842521.1| beta-lactamase [Fervidicoccus fontis Kam940]
gi|383795986|gb|AFH43069.1| beta-lactamase domain protein [Fervidicoccus fontis Kam940]
Length = 619
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 66/207 (31%), Positives = 109/207 (52%), Gaps = 14/207 (6%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNN--- 58
+I + LG QEVG+S ++V N +I+ D G++ + F I+ D +
Sbjct: 158 SIRIIALGGFQEVGRSAILVETNESKILLDAGVNPGSSS------FPSIAPRFDVDEFKI 211
Query: 59 -AIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEV 117
+D IVITH HLDH+G LPF + GYNGP+YMT TR + + D+ ++ + G++
Sbjct: 212 EELDAIVITHAHLDHVGMLPFLFKY-GYNGPVYMTKATRDIMVLSQLDFLDIMT-KEGKI 269
Query: 118 EQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYT 175
+T + + + I V+ + D+++ Y AGH+LG+AM + +G+ +VYT
Sbjct: 270 PPYTQKEVKKAVLHTIPVEYGDVTDIAPDIRLTLYDAGHILGSAMAHLHIGNGLHNIVYT 329
Query: 176 GDYNMTPDRHLGAARIDRLQLDLLITE 202
GD+ + L A +L+ LI E
Sbjct: 330 GDFKYAHTKLLNKATDKFPRLETLIME 356
>gi|222445335|ref|ZP_03607850.1| hypothetical protein METSMIALI_00963 [Methanobrevibacter smithii
DSM 2375]
gi|261350104|ref|ZP_05975521.1| putative mRNA 3-end processing factor [Methanobrevibacter smithii
DSM 2374]
gi|222434900|gb|EEE42065.1| arCOG00543 universal archaeal KH-domain/beta-lactamase-domain
protein [Methanobrevibacter smithii DSM 2375]
gi|288860890|gb|EFC93188.1| putative mRNA 3-end processing factor [Methanobrevibacter smithii
DSM 2374]
Length = 636
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 62/203 (30%), Positives = 107/203 (52%), Gaps = 18/203 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQ------YPDFSRISKSCDFNNAID 61
+G +EVG+S +++ R++ DCG+++A +D++ P+FS +D
Sbjct: 185 MGGFKEVGRSSMLLQTPNSRVLLDCGVNVAASDNKNAFPYLNVPEFSI--------EELD 236
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
++I+H HLDH G +P+ GY GPIY T PTR L ++ D+ + R G F
Sbjct: 237 AVIISHAHLDHCGFVPYLYHY-GYEGPIYCTTPTRDLTTLLQLDHLDI-AHREGNPLPFN 294
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYN 179
H+ + +K I +D + + D+++ + AGH+LG+A+ + +GD A +VYTGD+
Sbjct: 295 VKHVQKAIKHTITLDYGEVTDISPDIRLTLHNAGHILGSAISHMHIGDGAHNLVYTGDFK 354
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
R L A + + +I E
Sbjct: 355 YERSRLLEPATFRFPRAETVIME 377
>gi|330835859|ref|YP_004410587.1| beta-lactamase domain-containing protein [Metallosphaera cuprina
Ar-4]
gi|329567998|gb|AEB96103.1| beta-lactamase domain-containing protein [Metallosphaera cuprina
Ar-4]
Length = 638
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 67/200 (33%), Positives = 108/200 (54%), Gaps = 12/200 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYN-DHRQYP--DFSRISKSCDFNNAIDCIV 64
LGA QEVG+S V+V RI+ D G++ + N R +P D ++ +D +V
Sbjct: 184 LGAFQEVGRSAVLVETPESRILMDVGVNPSVNFGERMFPKLDIDQLRLE-----DLDAVV 238
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
+TH HLDH G +PF + GY GP+Y T PTR + +M D V D+ G +++
Sbjct: 239 LTHAHLDHSGMIPFLFKY-GYEGPVYTTQPTRDIMALMQLDMLDV-ADKEGRPLPYSAKE 296
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTP 182
+ + + I +D ++ + D+++ Y AGH++G+AM + +GD +VYTGD+
Sbjct: 297 VRKELLHTITLDYEEVTDIAPDIRLTFYNAGHIIGSAMAHLHIGDGVHNLVYTGDFKYAR 356
Query: 183 DRHLGAARIDRLQLDLLITE 202
R L A + ++D LI E
Sbjct: 357 TRLLDRAVSEFPRVDTLIME 376
>gi|148643098|ref|YP_001273611.1| metal-dependent RNase [Methanobrevibacter smithii ATCC 35061]
gi|148552115|gb|ABQ87243.1| predicted metal-dependent RNase [Methanobrevibacter smithii ATCC
35061]
Length = 636
Score = 112 bits (279), Expect = 1e-22, Method: Composition-based stats.
Identities = 62/203 (30%), Positives = 107/203 (52%), Gaps = 18/203 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQ------YPDFSRISKSCDFNNAID 61
+G +EVG+S +++ R++ DCG+++A +D++ P+FS +D
Sbjct: 185 MGGFKEVGRSSMLLQTPNSRVLLDCGVNVAASDNKNAFPYLNVPEFSI--------EELD 236
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
++I+H HLDH G +P+ GY GPIY T PTR L ++ D+ + R G F
Sbjct: 237 AVIISHAHLDHCGFVPYLYHY-GYEGPIYCTTPTRDLTTLLQLDHLDI-AHREGNPLPFN 294
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYN 179
H+ + +K I +D + + D+++ + AGH+LG+A+ + +GD A +VYTGD+
Sbjct: 295 VKHVQKAIKHTITLDYGEVTDISPDIRLTLHNAGHILGSAISHMHIGDGAHNLVYTGDFK 354
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
R L A + + +I E
Sbjct: 355 YERSRLLEPATFRFPRAETVIME 377
>gi|119872614|ref|YP_930621.1| beta-lactamase domain-containing protein [Pyrobaculum islandicum
DSM 4184]
gi|119674022|gb|ABL88278.1| beta-lactamase domain protein [Pyrobaculum islandicum DSM 4184]
Length = 640
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 66/203 (32%), Positives = 109/203 (53%), Gaps = 10/203 (4%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
AI LGA EVG+S ++V+ I+ DCG+ QY + + + D + +D
Sbjct: 179 AITVTFLGAAMEVGRSAILVSTTESNILLDCGLKPG-----QYDEDFPLLDAVDIDR-LD 232
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
+V+TH H+DH+G LPF + GY GP+YMT PT+ I+L DY + L +R G F+
Sbjct: 233 AVVLTHAHMDHVGCLPFLYKY-GYRGPVYMTDPTKYQTFILLMDYIE-LKEREGLEPAFS 290
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYN 179
+ + I +D ++ + D+++ Y AGH +G+AM + +G+ ++YTGD+
Sbjct: 291 RADVESVIYHTITLDYEEVTDIAPDVKLTFYDAGHEIGSAMAHLHIGNGRYNILYTGDFK 350
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
R L A ++++LI E
Sbjct: 351 YGKTRLLNRAVSKFKRVEMLIME 373
>gi|428671767|gb|EKX72682.1| cleavage and polyadenylation specificity factor protein, putative
[Babesia equi]
Length = 732
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 109/225 (48%), Gaps = 35/225 (15%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
VLGAG EVG+SCV +MFDCG+H A + P F ++ D C+V T
Sbjct: 18 VLGAGCEVGRSCVFAERGNDCVMFDCGLHPALSGVGALPVF----EAVDITKVKVCLV-T 72
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDY---------RKVL-----VD 112
HFHLDH GA+P+ G+ G I MT T+A+ ++ DY +K+ ++
Sbjct: 73 HFHLDHCGAIPYLLSKTGFKGKILMTCATKAICHLLWTDYARMEQLCSVKKIFDHTDKLN 132
Query: 113 RRGEVEQFTSDHIAE---------------CMKKVIAVDLKQTVQVDKDLQIRAYYAGHV 157
G + D + E + + +D + D ++I Y AGHV
Sbjct: 133 PDGTSNEEDEDVVDELVCGSGLYSFEDVEYALNHIETIDFHEERSFD-GIKISCYRAGHV 191
Query: 158 LGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
LGA MF ++ ++YTGDY+ DRHL +A I + + LLI+E
Sbjct: 192 LGACMFLVEMDGVRILYTGDYSTEYDRHLPSAEIPNINVHLLISE 236
>gi|146305000|ref|YP_001192316.1| beta-lactamase domain-containing protein [Metallosphaera sedula DSM
5348]
gi|145703250|gb|ABP96392.1| beta-lactamase domain protein [Metallosphaera sedula DSM 5348]
Length = 642
Score = 111 bits (278), Expect = 1e-22, Method: Composition-based stats.
Identities = 66/200 (33%), Positives = 109/200 (54%), Gaps = 12/200 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYN-DHRQYP--DFSRISKSCDFNNAIDCIV 64
LGA QEVG+S V+V R++ D G++ + N R +P D ++ +D +V
Sbjct: 184 LGAFQEVGRSAVLVETPESRVLMDVGVNPSVNFGERMFPKLDIDQLRLE-----DLDAVV 238
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
+TH HLDH G +PF + GY+GP+Y T PTR + +M D V D+ G +++
Sbjct: 239 LTHAHLDHSGMIPFLFKY-GYDGPVYTTQPTRDIMALMQLDLLDV-ADKEGRPLPYSAKE 296
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTP 182
+ + + I +D ++ + D+++ Y AGH++G+AM + +GD +VYTGD+
Sbjct: 297 VRKELLHTITLDYEEVTDIAPDIRLTFYNAGHIIGSAMAHLHIGDGVHNLVYTGDFKYAR 356
Query: 183 DRHLGAARIDRLQLDLLITE 202
R L A + ++D LI E
Sbjct: 357 TRLLDRAVSEFPRVDTLIME 376
>gi|153955532|ref|YP_001396297.1| hypothetical protein CKL_2915 [Clostridium kluyveri DSM 555]
gi|219855928|ref|YP_002473050.1| hypothetical protein CKR_2585 [Clostridium kluyveri NBRC 12016]
gi|146348390|gb|EDK34926.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
gi|219569652|dbj|BAH07636.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 832
Score = 111 bits (278), Expect = 2e-22, Method: Composition-based stats.
Identities = 57/195 (29%), Positives = 104/195 (53%), Gaps = 6/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG SC++V I + I+ DCG+ + + PDF I + ID I+I+H
Sbjct: 10 LGGAREVGGSCILVKIYNRNILMDCGIRQS-SSKDALPDFKSIQE----QGGIDAIIISH 64
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
H+DHIG+LP ++ IY T T+ L ++L D K++ +R GE+ + +
Sbjct: 65 SHMDHIGSLPIISKEYPL-ARIYATKMTKDLMRVLLYDSLKIMNNREGEIPLYAESDVKN 123
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
+ + ++ + +D+++ Y AGH+ GAA Y + ++ Y+GD+++ + +
Sbjct: 124 MLNSIFPINYMVEFPIFQDVKLTFYMAGHIAGAACVYVTTPEGSLFYSGDFSVFSQKTVE 183
Query: 188 AARIDRLQLDLLITE 202
++ RL+ D+ I E
Sbjct: 184 GLKVPRLRPDVAIFE 198
>gi|11498093|ref|NP_069318.1| mRNA 3'-end processing factor [Archaeoglobus fulgidus DSM 4304]
gi|2650146|gb|AAB90756.1| mRNA 3'-end processing factor, putative [Archaeoglobus fulgidus DSM
4304]
Length = 632
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 64/200 (32%), Positives = 107/200 (53%), Gaps = 14/200 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQY---PDFSRISKSCDFNNAIDCIV 64
LG +EVG+SC ++ RI+ DCG++++ Y P+ + +A+D +V
Sbjct: 183 LGGSREVGRSCYLLQTPESRILIDCGVNVSNLSSTPYLYVPEVQPL-------DALDAVV 235
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
ITH HLDH G +P + GY GPIY+T PTR L ++ D+ +V R G ++S+
Sbjct: 236 ITHAHLDHCGLVPLLYKF-GYRGPIYLTPPTRDLMVLLQLDFLEV-AGREGTNPPYSSNL 293
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTP 182
I E +K I +D + D+++ Y AGH+LG+A+ + +G+ + +TGD+
Sbjct: 294 IREALKHTITLDYGVVTDISPDVRLTFYNAGHILGSAIAHFHIGEGHYNIAFTGDFKFEK 353
Query: 183 DRHLGAARIDRLQLDLLITE 202
R A + +L+ L+ E
Sbjct: 354 TRLFDRAATNFPRLEALVME 373
>gi|332799023|ref|YP_004460522.1| beta-lactamase domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|332696758|gb|AEE91215.1| beta-lactamase domain protein [Tepidanaerobacter acetatoxydans Re1]
Length = 831
Score = 110 bits (276), Expect = 3e-22, Method: Composition-based stats.
Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 9/196 (4%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G QEVG SC +VTI+GK I+ DCG+ + + PDF I + N ID I+I+H
Sbjct: 7 GGAQEVGASCYLVTIDGKNILLDCGIRLT-SSKDTLPDFRLIQE----NGGIDAIIISHA 61
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
H DH GALP + N IYMT+ ++ L ++L D K++ +R E+ + +H+ E
Sbjct: 62 HTDHTGALPAISRQFP-NALIYMTHMSKDLTRVLLYDSLKIM-EREPEIPIYAENHVQEM 119
Query: 129 MKKVIAVDLKQTVQVDKDLQIRA--YYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ + + + ++ D I A Y AGH+ GAA Y + ++ Y+GD + +
Sbjct: 120 LGRTVCFSPNFSFKLFSDSNITATFYSAGHIAGAASIYMVGSEGSLFYSGDISGFRQNTI 179
Query: 187 GAARIDRLQLDLLITE 202
A + +L+ D+ I E
Sbjct: 180 EGATVPKLRPDVAIFE 195
>gi|84489102|ref|YP_447334.1| exonuclease [Methanosphaera stadtmanae DSM 3091]
gi|84372421|gb|ABC56691.1| predicted exonuclease [Methanosphaera stadtmanae DSM 3091]
Length = 635
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 59/198 (29%), Positives = 106/198 (53%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG +EVG+SC+ + +++ DCG+++A D + F + +FN +D ++IT
Sbjct: 184 LGGFREVGRSCLFLQTPNSKVILDCGVNVAGIDEKTAYPFLNVP---EFNLQDLDAVIIT 240
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH G +P+ GY+GP Y T PTR + ++ +D+ + R + F +
Sbjct: 241 HAHLDHTGFVPYLYHY-GYDGPTYCTTPTRDMMTLLQQDHLDI-SHREDKPLPFNIKDVK 298
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
E + K I +D Q + D+++ + AGH++G+AM + +GD +YTGD+ R
Sbjct: 299 ETINKTITLDYGQVTDISPDIRLTLHDAGHIVGSAMAHLNIGDGKHNFLYTGDFKNEQSR 358
Query: 185 HLGAARIDRLQLDLLITE 202
LG + +++ ++ E
Sbjct: 359 LLGTPKQHFARIESMVME 376
>gi|300856380|ref|YP_003781364.1| metal-dependent RNase [Clostridium ljungdahlii DSM 13528]
gi|300436495|gb|ADK16262.1| putative metal-dependent RNase [Clostridium ljungdahlii DSM 13528]
Length = 825
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 57/196 (29%), Positives = 106/196 (54%), Gaps = 8/196 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG SC+++ I K I+ DCG+ + + PDF KS +D I+++H
Sbjct: 6 LGGAREVGGSCILLNIYNKNILLDCGIRQS-SSKDTLPDF----KSIQDQGGVDVIIVSH 60
Query: 68 FHLDHIGALPFFTEICGYNGP-IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H+DHIG+LP ++ Y G IY T T+ L ++L D K++ +R GE+ + +
Sbjct: 61 AHMDHIGSLPIISK--EYPGARIYTTRMTKDLMKVLLYDSLKIMKNREGEIPLYAEGDVI 118
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ +V ++ + +++++ Y AGH+ GAA Y + ++ Y+GD+++ + +
Sbjct: 119 SMLNRVFPINYMVEFSIFENIKLTFYTAGHIAGAACIYITTPEGSLFYSGDFSIFSQKTV 178
Query: 187 GAARIDRLQLDLLITE 202
++ +L+ D I E
Sbjct: 179 EGLKVPKLRPDAAIFE 194
>gi|398406895|ref|XP_003854913.1| hypothetical protein MYCGRDRAFT_55193, partial [Zymoseptoria
tritici IPO323]
gi|339474797|gb|EGP89889.1| hypothetical protein MYCGRDRAFT_55193 [Zymoseptoria tritici IPO323]
Length = 855
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 17/208 (8%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
L LG G EVG+SC ++ GK +M D G+H +Y P + S +D ++I
Sbjct: 29 LALGGGNEVGRSCHIIQYKGKTVMLDAGIHPSYEGLGALPFYDEFDLST-----VDLLLI 83
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---------LVDRRGE 116
THFH DH +LP+ + G +YMT+PT+A+ +D +V G
Sbjct: 84 THFHQDHSASLPYVLAKTNFAGRVYMTHPTKAIYKWTTQDAVRVHNTHTPASSTSGTDGY 143
Query: 117 VEQ-FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYT 175
V Q +T I + + + T ++ Y AGHVLGA M+ ++ +++T
Sbjct: 144 VSQLYTEQDILSTLPMIQTISF-HTTHSHNGIRFTPYPAGHVLGACMYLIEIAGLNILFT 202
Query: 176 GDYNMTPDRHLGAARIDR-LQLDLLITE 202
GDY+ DRHL A + R +++D LITE
Sbjct: 203 GDYSRETDRHLIPAAVPRNVKIDCLITE 230
>gi|345018855|ref|YP_004821208.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
wiegelii Rt8.B1]
gi|344034198|gb|AEM79924.1| RNA-metabolising metallo-beta-lactamase [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 829
Score = 110 bits (275), Expect = 3e-22, Method: Composition-based stats.
Identities = 62/196 (31%), Positives = 104/196 (53%), Gaps = 9/196 (4%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G EVG SC ++ + GK I+ DCG+ M+ + PDF I + + +D I+++H
Sbjct: 7 GGANEVGASCYLINLEGKNILLDCGIRMS-STKDNLPDFRLIQE----HGGVDAIIVSHA 61
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALP + + IYMT+ T+ L ++L D K++ +R E+ + +H+ +
Sbjct: 62 HLDHTGALPIISRMYP-QAKIYMTHATKDLTRVLLYDSLKIM-ERESEIPIYAENHVKDM 119
Query: 129 MKKVIAVDLKQTVQVDKDLQIRA--YYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ + + T D QI+ Y AGH+LGAA Y + ++ Y+GD++ +
Sbjct: 120 LDRALCYTPGYTFTPFPDSQIKVTLYPAGHILGAASVYITSEEGSVFYSGDFSGFRQNTI 179
Query: 187 GAARIDRLQLDLLITE 202
A I +L+ D+ I E
Sbjct: 180 EGAFIPKLRPDVAIFE 195
>gi|342879865|gb|EGU81098.1| hypothetical protein FOXB_08372 [Fusarium oxysporum Fo5176]
Length = 858
Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 108/221 (48%), Gaps = 25/221 (11%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP-----DFSRISKSCDFNNAI 60
L LG G EVG+SC ++ GK +M D G H AY+ P D S + A
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISQTAS 87
Query: 61 DCIVITH----------------FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLE 104
C+V++ FH+DH +LP+ + G ++MT+PT+A+ +++
Sbjct: 88 YCVVLSRPVSCSRDDDIHDFAFFFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQ 147
Query: 105 DYRKVLVDRRGEVEQ--FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM 162
D +V Q +T ++ A+D T ++I Y AGHVLGAAM
Sbjct: 148 DSVRVGNTSSNPTTQPVYTEQDHLNTFPQIEAIDY-HTTHTISSIRITPYPAGHVLGAAM 206
Query: 163 FYAKVGDSAMVYTGDYNMTPDRHLGAARIDR-LQLDLLITE 202
F ++ + +TGDY+ DRHL +A + + +++D+LITE
Sbjct: 207 FLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLITE 247
>gi|281351872|gb|EFB27456.1| hypothetical protein PANDA_012399 [Ailuropoda melanoleuca]
Length = 648
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 7/173 (4%)
Query: 30 FDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPI 89
DCG+H P I + ID ++I+HFHLDH GALP+F + + G
Sbjct: 3 LDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISHFHLDHCGALPWFLQKTSFKGRT 57
Query: 90 YMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQI 149
+MT+ T+A+ +L DY KV + + +T + E M K+ ++ + +V ++
Sbjct: 58 FMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEESMDKIETINFHEVKEV-AGIKF 115
Query: 150 RAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
Y+AGHVLGAAMF ++ ++YTGD++ DRHL AA I ++ D+LI E
Sbjct: 116 WCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIE 168
>gi|453087099|gb|EMF15140.1| Metallo-hydrolase/oxidoreductase [Mycosphaerella populorum SO2202]
Length = 845
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 17/208 (8%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
L LG G EVG+SC ++ GK IM D G+H +Y P + S +D ++I
Sbjct: 29 LALGGGNEVGRSCHIIQYKGKTIMLDAGIHPSYEGLGALPFYDEFDLST-----VDLLLI 83
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---------LVDRRGE 116
THFH DH +LP+ + G ++MT+PT+A+ +D +V G
Sbjct: 84 THFHQDHSASLPYVLSKTNFAGKVFMTHPTKAIYKWTTQDAVRVHNTHAPASSTSGTDGY 143
Query: 117 VEQ-FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYT 175
V Q +T I + + + T ++ Y AGHVLGA M+ ++ +++T
Sbjct: 144 VSQLYTEQDILSTLPMIQTISF-HTTHSHNGIRFTPYPAGHVLGACMYLIEIAGLNVLFT 202
Query: 176 GDYNMTPDRHLGAARIDR-LQLDLLITE 202
GDY+ DRHL A + R +++D LITE
Sbjct: 203 GDYSRENDRHLIPAAVPRNVKVDCLITE 230
>gi|328350068|emb|CCA36468.1| hypothetical protein PP7435_Chr1-0308 [Komagataella pastoris CBS
7435]
Length = 741
Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 88/143 (61%), Gaps = 1/143 (0%)
Query: 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
+D ++I+HFHLDH +LP+ + + G ++MT+PT+A+ +L D+ +V +
Sbjct: 15 VDVLLISHFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLNDFVRVTAIDDDSNQL 74
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
++ + + ++ +D T+++D ++ AY AGHVLGAAMF+ ++ +++TGD++
Sbjct: 75 YSDKDLKDSFDRIETIDFHSTIEID-GIRFTAYQAGHVLGAAMFFIEIAGIKVLFTGDFS 133
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
DRHL A + ++ D+LITE
Sbjct: 134 REEDRHLSVAEVPPVRPDVLITE 156
>gi|327261273|ref|XP_003215455.1| PREDICTED: cleavage and polyadenylation specificity factor subunit
3-like [Anolis carolinensis]
Length = 651
Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/173 (35%), Positives = 95/173 (54%), Gaps = 7/173 (4%)
Query: 30 FDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPI 89
DCG+H P I + ID ++I+HFHLDH GALP+F + + G
Sbjct: 5 LDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISHFHLDHCGALPWFLQKTSFKGRT 59
Query: 90 YMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQI 149
+MT+ T+A+ +L DY KV + + +T + E M K+ ++ + +V ++
Sbjct: 60 FMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEESMDKIETINFHEVKEV-AGIKF 117
Query: 150 RAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
Y+AGHVLGAAMF ++ ++YTGD++ DRHL AA I ++ D+LI E
Sbjct: 118 WCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLMAAEIPNIKPDILIIE 170
>gi|323336337|gb|EGA77605.1| Ysh1p [Saccharomyces cerevisiae Vin13]
Length = 745
Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 59/181 (32%), Positives = 99/181 (54%), Gaps = 13/181 (7%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
M D G+H AY P + S +D ++I+HFHLDH +LP+ + + G
Sbjct: 1 MLDAGIHPAYQGLASLPFYDEFDLS-----KVDILLISHFHLDHAASLPYVMQRTNFQGR 55
Query: 89 IYMTYPTRALAPIMLEDYRKV-----LVDRRGEVEQ--FTSDHIAECMKKVIAVDLKQTV 141
++MT+PT+A+ +L D+ +V G ++ F+ + + + K+ VD TV
Sbjct: 56 VFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETVDYHSTV 115
Query: 142 QVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLIT 201
V+ ++ A++AGHVLGAAMF ++ +++TGDY+ DRHL +A + L ++LI
Sbjct: 116 DVN-GIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIV 174
Query: 202 E 202
E
Sbjct: 175 E 175
>gi|323307973|gb|EGA61229.1| Ysh1p [Saccharomyces cerevisiae FostersO]
Length = 727
Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats.
Identities = 59/181 (32%), Positives = 99/181 (54%), Gaps = 13/181 (7%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
M D G+H AY P + S +D ++I+HFHLDH +LP+ + + G
Sbjct: 1 MLDAGIHPAYQGLASLPFYDEFDLS-----KVDILLISHFHLDHAASLPYVMQRTNFQGR 55
Query: 89 IYMTYPTRALAPIMLEDYRKV-----LVDRRGEVEQ--FTSDHIAECMKKVIAVDLKQTV 141
++MT+PT+A+ +L D+ +V G ++ F+ + + + K+ VD TV
Sbjct: 56 VFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETVDYHSTV 115
Query: 142 QVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLIT 201
V+ ++ A++AGHVLGAAMF ++ +++TGDY+ DRHL +A + L ++LI
Sbjct: 116 DVN-GIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIV 174
Query: 202 E 202
E
Sbjct: 175 E 175
>gi|323303815|gb|EGA57598.1| Ysh1p [Saccharomyces cerevisiae FostersB]
Length = 727
Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats.
Identities = 59/181 (32%), Positives = 99/181 (54%), Gaps = 13/181 (7%)
Query: 29 MFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
M D G+H AY P + S +D ++I+HFHLDH +LP+ + + G
Sbjct: 1 MLDAGIHPAYQGLASLPFYDEFDLS-----KVDILLISHFHLDHAASLPYVMQRTNFQGR 55
Query: 89 IYMTYPTRALAPIMLEDYRKV-----LVDRRGEVEQ--FTSDHIAECMKKVIAVDLKQTV 141
++MT+PT+A+ +L D+ +V G ++ F+ + + + K+ VD TV
Sbjct: 56 VFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLFSDEDLVDSFDKIETVDYHSTV 115
Query: 142 QVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLIT 201
V+ ++ A++AGHVLGAAMF ++ +++TGDY+ DRHL +A + L ++LI
Sbjct: 116 DVN-GIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSREVDRHLNSAEVPPLSSNVLIV 174
Query: 202 E 202
E
Sbjct: 175 E 175
>gi|389860541|ref|YP_006362780.1| beta-lactamase [Thermogladius cellulolyticus 1633]
gi|388525444|gb|AFK50642.1| beta-lactamase domain protein [Thermogladius cellulolyticus 1633]
Length = 653
Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats.
Identities = 63/199 (31%), Positives = 107/199 (53%), Gaps = 9/199 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMA--YNDHRQYPDFSRISKSCDFNNAIDCIVI 65
LG EVG+S ++V R++ D G+++ ++ + YP+ + D +D +++
Sbjct: 193 LGGFMEVGRSAILVETKESRVLLDLGINVGAIHDPLKAYPEIDLDAIRVD---ELDAVIV 249
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH+G +P + GY GP YMT PTR L+ IM++D +V R G F +
Sbjct: 250 THSHLDHVGVVPLLYKY-GYRGPTYMTKPTRELSAIMIQDLIQV-ARREGRDIPFGEKDL 307
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
+ + I V+ + V D+++ Y AGH+LG+A+ + +G +VYTGD+ +
Sbjct: 308 STMILHTIPVEYDEVTDVAPDIKLTMYNAGHILGSAIVHLHIGMGLHNIVYTGDFKYSST 367
Query: 184 RHLGAARIDRLQLDLLITE 202
R L A + +++ LI E
Sbjct: 368 RLLDKAVSEFPRVETLIIE 386
>gi|440298403|gb|ELP91039.1| Cleavage and polyadenylation specificity factor subunit, putative
[Entamoeba invadens IP1]
Length = 788
Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats.
Identities = 60/195 (30%), Positives = 108/195 (55%), Gaps = 9/195 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG+EVG+SC V+ G IM DCG+H A + D + + D + +I+ + +TH
Sbjct: 26 LGAGREVGRSCFVLKYMGHNIMLDCGVHPA---KKHGEDALPLFEYGDVD-SIELLCVTH 81
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FH+DH ALP+ Y G I MT PT+ + + +++ ++ ++ E
Sbjct: 82 FHVDHCAALPYLVLERNYKGKILMTPPTKEIFGELFKEFHQM----SSTIQPPKPVSPKE 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
++++ + + +Q ++I + AGH+LGAAMF ++ ++YTGD++ DRH+
Sbjct: 138 VLERIDTIKFHE-MQEFNGMKIWCFNAGHILGAAMFCLEINGVKILYTGDFSGESDRHMH 196
Query: 188 AARIDRLQLDLLITE 202
+A + ++D++I E
Sbjct: 197 SAEVPPFEIDVMICE 211
>gi|91772428|ref|YP_565120.1| beta-lactamase-like protein [Methanococcoides burtonii DSM 6242]
gi|91711443|gb|ABE51370.1| RNA-metabolizing metallo-beta-lactamase protein [Methanococcoides
burtonii DSM 6242]
Length = 636
Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 110/201 (54%), Gaps = 15/201 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQ----YPDFSRISKSCDFNNAIDCI 63
LG +EVG+SC +++ +IM DCG+++ +D+ P+ + N ID +
Sbjct: 186 LGGCKEVGRSCFLLSTPESKIMIDCGVNVGSDDNMTPYLYLPEVQPL-------NQIDAV 238
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
VITH HLDH G +P + GY GPIY T PTR + ++ D+ V + G+ + S
Sbjct: 239 VITHAHLDHQGLVPLLYKY-GYEGPIYCTSPTRDIMTLLQLDFIDVAA-KEGKKPPYEST 296
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMT 181
++ + +K IA+D ++ + D+++ + AGH++G+A+ + +GD +V TGDY
Sbjct: 297 NVRDALKHTIALDYEEVTDIAPDVKLTFHNAGHIIGSAISHFHIGDGLHNVVVTGDYKYG 356
Query: 182 PDRHLGAARIDRLQLDLLITE 202
P R A +++ +ITE
Sbjct: 357 PTRLFDPAVNKFPRVETVITE 377
>gi|374633103|ref|ZP_09705470.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Metallosphaera yellowstonensis MK1]
gi|373524587|gb|EHP69464.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Metallosphaera yellowstonensis MK1]
Length = 639
Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats.
Identities = 64/200 (32%), Positives = 108/200 (54%), Gaps = 12/200 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND-HRQYP--DFSRISKSCDFNNAIDCIV 64
LGA QEVG+S V+V R++ D G++ + N R +P D ++ +D +V
Sbjct: 184 LGAFQEVGRSAVLVETPESRVLLDVGVNPSVNSGERMFPKLDIDQLRLE-----DLDAVV 238
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
+TH HLDH G +PF + GY GP+Y T PTR + +M D + ++ G +++
Sbjct: 239 LTHAHLDHSGMIPFLFKY-GYEGPVYATQPTRDIMALMQLDMLDI-SEKEGRPLPYSAKE 296
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTP 182
+ + + I +D ++ + D+++ Y AGH++G+AM + +GD +VYTGD+
Sbjct: 297 VRKELLHTITLDYEEVTDIAPDIRLTFYNAGHIIGSAMAHLHIGDGTHNLVYTGDFKYAR 356
Query: 183 DRHLGAARIDRLQLDLLITE 202
R L A + ++D LI E
Sbjct: 357 TRLLDRAVAEFPRVDTLIME 376
>gi|347522769|ref|YP_004780339.1| KH-domain/beta-lactamase-domain containing protein [Pyrolobus
fumarii 1A]
gi|343459651|gb|AEM38087.1| KH-domain/beta-lactamase-domain protein [Pyrolobus fumarii 1A]
Length = 649
Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats.
Identities = 65/201 (32%), Positives = 106/201 (52%), Gaps = 11/201 (5%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP--DFSRISKSCDFNNAIDCI 63
+ LG EVG+S ++V + R++ D G++ + YP D I +D +
Sbjct: 185 VALGGFMEVGRSAILVETSESRVLLDLGVNPGGTGYDMYPRLDIDEIRPE-----ELDAV 239
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
+ITH HLDH+G +PF + G+ GP+Y+T PTR L + L D+ V V + G F+
Sbjct: 240 IITHAHLDHMGLVPFLFKY-GFKGPVYVTKPTRDLMVLSLFDFLDV-VTKEGRKPPFSQH 297
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMT 181
I + + IA+D ++ V D+++ Y AGH+LG+A+ + +G+ +VYTGD
Sbjct: 298 DIRKMILHTIALDYEEVTDVTPDIKLTFYNAGHILGSAIAHLHIGEGLHNIVYTGDMKYA 357
Query: 182 PDRHLGAARIDRLQLDLLITE 202
R L A +++ LI E
Sbjct: 358 NTRLLTKAHTKFPRVETLIIE 378
>gi|145590331|ref|YP_001152333.1| beta-lactamase domain-containing protein [Pyrobaculum arsenaticum
DSM 13514]
gi|145282099|gb|ABP49681.1| beta-lactamase domain protein [Pyrobaculum arsenaticum DSM 13514]
Length = 635
Score = 109 bits (272), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 109/202 (53%), Gaps = 10/202 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGA EVG+S ++V+ ++ DCG+ + D DF + D + +D
Sbjct: 175 ITVTFLGAAMEVGRSAILVSTTESNVLLDCGLKPSQYDE----DFPMLD-LVDIDR-LDA 228
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+V+TH H+DH+G LPF + GY GP+YMT PT+ A I+L DY + L +R G F+
Sbjct: 229 VVLTHAHMDHVGCLPFLFK-YGYKGPVYMTDPTKYQAFILLTDYVE-LKEREGLQPSFSK 286
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNM 180
+ + I +D ++ + D+++ Y AGH +G+AM + +G+ ++YTGD+
Sbjct: 287 ADVEAVIYHTITLDYEEVTDIAPDIKLTFYDAGHEIGSAMAHLHIGNGRYNILYTGDFKY 346
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
R L A ++++LI E
Sbjct: 347 GKTRLLNRAVSKFKRVEMLIME 368
>gi|407041778|gb|EKE40943.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba nuttalli P19]
Length = 751
Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats.
Identities = 59/196 (30%), Positives = 107/196 (54%), Gaps = 11/196 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAY-NDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LGAG+EVG+SC ++ G IM DCG+H A + P F ++I+ + +T
Sbjct: 26 LGAGREVGRSCFILKYMGHNIMLDCGVHPAKPHGEAALPLFEHADI-----DSIELLCVT 80
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H+H+DH +LP+ + G + MT PT+ + + +++ ++ ++ S +
Sbjct: 81 HYHVDHCASLPYLILERQFKGKVLMTPPTKEIFGELFKEFHQM----SSTIQPPKSVNPK 136
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
E M ++ + + +Q ++I + AGH+LGAAMF ++ ++YTGD++ DRHL
Sbjct: 137 EVMDRIDTIKFHE-LQEYNGMKIWCFNAGHILGAAMFCIEINGVKILYTGDFSGETDRHL 195
Query: 187 GAARIDRLQLDLLITE 202
AA + Q+D+++ E
Sbjct: 196 QAAEVPPFQIDVMMCE 211
>gi|167395302|ref|XP_001733549.1| Cleavage and polyadenylation specificity factor subunit [Entamoeba
dispar SAW760]
gi|165894214|gb|EDR22276.1| Cleavage and polyadenylation specificity factor subunit, putative
[Entamoeba dispar SAW760]
Length = 736
Score = 109 bits (272), Expect = 8e-22, Method: Composition-based stats.
Identities = 59/196 (30%), Positives = 107/196 (54%), Gaps = 11/196 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAY-NDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LGAG+EVG+SC ++ G IM DCG+H A + P F ++I+ + +T
Sbjct: 26 LGAGREVGRSCFILKYMGHNIMLDCGVHPAKPHGEAALPLFEHADI-----DSIELLCVT 80
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H+H+DH +LP+ + G + MT PT+ + + +++ ++ ++ S +
Sbjct: 81 HYHVDHCASLPYLILERQFKGKVLMTPPTKEIFGELFKEFHQM----SSTIQPPKSVNPK 136
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
E M ++ + + +Q ++I + AGH+LGAAMF ++ ++YTGD++ DRHL
Sbjct: 137 EVMDRIDTIKFHE-LQEYNGMKIWCFNAGHILGAAMFCIEINGVKILYTGDFSGETDRHL 195
Query: 187 GAARIDRLQLDLLITE 202
AA + Q+D+++ E
Sbjct: 196 QAAEVPPFQIDVMMCE 211
>gi|379005388|ref|YP_005261060.1| universal KH-domain/beta-lactamase-domain protein [Pyrobaculum
oguniense TE7]
gi|375160841|gb|AFA40453.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Pyrobaculum oguniense TE7]
Length = 635
Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/202 (32%), Positives = 109/202 (53%), Gaps = 10/202 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGA EVG+S ++V+ ++ DCG+ + D DF + D + +D
Sbjct: 175 ITVAFLGAAMEVGRSAILVSTTESNVLLDCGLKPSQYDE----DFPMLD-LVDIDR-LDA 228
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+V+TH H+DH+G LPF + GY GP+YMT PT+ A I+L DY + L +R G F+
Sbjct: 229 VVLTHAHMDHVGCLPFLFK-YGYKGPVYMTDPTKYQAFILLTDYVE-LKEREGLQPSFSK 286
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNM 180
+ + I +D ++ + D+++ Y AGH +G+AM + +G+ ++YTGD+
Sbjct: 287 ADVEAVIYHTITLDYEEVTDIAPDIKLTFYDAGHEIGSAMAHLHIGNGRYNILYTGDFKY 346
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
R L A ++++LI E
Sbjct: 347 GKTRLLNRAVSKFKRVEMLIME 368
>gi|150401471|ref|YP_001325237.1| beta-lactamase domain-containing protein [Methanococcus aeolicus
Nankai-3]
gi|150014174|gb|ABR56625.1| beta-lactamase domain protein [Methanococcus aeolicus Nankai-3]
Length = 426
Score = 108 bits (271), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 102/194 (52%), Gaps = 22/194 (11%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G ++G SCV + +I+ DCGM+ + N +I+ N ID +V++H
Sbjct: 8 GGCHQIGMSCVEIDTKKSKILVDCGMNPSDNS------LPKINP-----NDIDAVVVSHS 56
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GA+P+F + PIY T P+ L I+ +D K+ + + ++I +
Sbjct: 57 HLDHCGAVPYFN----FKNPIYSTIPSVDLMYILWKDISKL-------SKTYPEENIQKA 105
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M + AV+ ++ ++ D+ +R Y AGH+LG++ Y +G ++YTGD N R L +
Sbjct: 106 MNNIKAVNYREPKKITSDITMRLYDAGHILGSSSVYLDIGGKKLLYTGDINEIETRTLKS 165
Query: 189 ARIDRLQLDLLITE 202
A D ++D LI E
Sbjct: 166 ADTDIDEIDTLIIE 179
>gi|451818434|ref|YP_007454635.1| RNA-metabolising metallo-beta-lactamase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451784413|gb|AGF55381.1| RNA-metabolising metallo-beta-lactamase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 851
Score = 108 bits (271), Expect = 9e-22, Method: Composition-based stats.
Identities = 60/197 (30%), Positives = 105/197 (53%), Gaps = 10/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG EVG S +++ IN K I+FD G+ A D P+F I +D I+I+
Sbjct: 9 LGGALEVGGSSILIKINNKNILFDAGIRQNASKD--SMPNFRDIQTY----GGLDAIIIS 62
Query: 67 HFHLDHIGALPFFTEICGY-NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
H HLDHIG LP ++ Y N IYM T+ L ++L D K++ +R E+ + +
Sbjct: 63 HAHLDHIGCLPIISK--EYPNAKIYMNNMTKDLVKVLLYDSLKIMSNREAEIPLYAEVDV 120
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
+ ++ ++ + + +D+ + Y AGH+ GA+ Y + + A+ Y+GD+++ R
Sbjct: 121 ENTLNRIFTINYEVKFPIFEDMHVTFYNAGHIAGASCVYLQSPEGAVFYSGDFSVFSQRT 180
Query: 186 LGAARIDRLQLDLLITE 202
+ A++ +L+ D+ I E
Sbjct: 181 VEGAKLPKLRPDVAIVE 197
>gi|438002123|ref|YP_007271866.1| Metallo-beta-lactamase family protein, RNA-specific
[Tepidanaerobacter acetatoxydans Re1]
gi|432178917|emb|CCP25890.1| Metallo-beta-lactamase family protein, RNA-specific
[Tepidanaerobacter acetatoxydans Re1]
Length = 469
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 104/196 (53%), Gaps = 9/196 (4%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G QEVG SC +VTI+GK I+ DCG+ + + PDF I + N ID I+I+H
Sbjct: 7 GGAQEVGASCYLVTIDGKNILLDCGIRLT-SSKDTLPDFRLIQE----NGGIDAIIISHA 61
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
H DH GALP + N IYMT+ ++ L ++L D K++ +R E+ + +H+ E
Sbjct: 62 HTDHTGALPAISRQFP-NALIYMTHMSKDLTRVLLYDSLKIM-EREPEIPIYAENHVQEM 119
Query: 129 MKKVIAVDLKQTVQVDKDLQIRA--YYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ + + + ++ D I A Y AGH+ GAA Y + ++ Y+GD + +
Sbjct: 120 LGRTVCFSPNFSFKLFSDSNITATFYSAGHIAGAASIYMVGSEGSLFYSGDISGFRQNTI 179
Query: 187 GAARIDRLQLDLLITE 202
A + +L+ D+ I E
Sbjct: 180 EGATVPKLRPDVAIFE 195
>gi|48477759|ref|YP_023465.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Picrophilus torridus DSM 9790]
gi|48430407|gb|AAT43272.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Picrophilus torridus DSM 9790]
Length = 638
Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 62/179 (34%), Positives = 101/179 (56%), Gaps = 7/179 (3%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGM-HMAYNDH-RQYPDFSRISKSCDFNNAI 60
I LG +EVG+S +++ N +I+ DCGM ++ DH + + + + F+ ++
Sbjct: 179 IRITALGGHREVGRSATLISTNNSKILVDCGMINVNDPDHPWEEAPYLYVPEIQPFS-SL 237
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D +++TH HLDH G +P + GY+GP+Y T PTR LA ++ DY KV G +
Sbjct: 238 DAVILTHAHLDHSGLVPLLYK-YGYDGPLYTTAPTRDLAALLQNDYIKV-AHSEGHKISY 295
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGD 177
S HI E +K IA+ +T + D+++ Y AGH+LG+A + +GD +V +GD
Sbjct: 296 ESKHIREMLKHTIALKYNETTDITPDVRLTLYNAGHILGSASVHLHIGDGLYNIVLSGD 354
>gi|320101459|ref|YP_004177051.1| KH-domain/beta-lactamase-domain-containing protein [Desulfurococcus
mucosus DSM 2162]
gi|319753811|gb|ADV65569.1| KH-domain/beta-lactamase-domain protein [Desulfurococcus mucosus
DSM 2162]
Length = 647
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 66/199 (33%), Positives = 104/199 (52%), Gaps = 9/199 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDH--RQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG+S ++V +++ D G++ D + YP S D +D +++
Sbjct: 193 LGGFREVGRSSILVETRESKVLLDLGINTGAIDDPGKAYPLLEVDSLRLD---ELDGVIV 249
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH+G +P + GY GP+Y+T PTR L +ML+D V R G F+ I
Sbjct: 250 THAHLDHVGLVPVLYKY-GYRGPVYVTKPTRELMIVMLKDLVDV-TRRSGRYIPFSEKDI 307
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
+ + I VD + V D+++ Y AGH+LG+A+ + VG +VYTGD+ +
Sbjct: 308 STMLLHTITVDYDEVTDVAPDIKLTMYNAGHILGSAIVHLHVGMGLHNIVYTGDFKYSDS 367
Query: 184 RHLGAARIDRLQLDLLITE 202
R L A +++ LI E
Sbjct: 368 RLLNKANTVFPRVETLIME 386
>gi|390939088|ref|YP_006402826.1| KH-domain/beta-lactamase-domain-containing protein [Desulfurococcus
fermentans DSM 16532]
gi|390192195|gb|AFL67251.1| KH-domain/beta-lactamase-domain protein [Desulfurococcus fermentans
DSM 16532]
Length = 647
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 67/203 (33%), Positives = 107/203 (52%), Gaps = 17/203 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYP----DFSRISKSCDFNNAID 61
LG +EVG+S ++V +I+ D G++ D ++ YP D R+ + +D
Sbjct: 193 LGGFREVGRSAILVETRESKILLDLGLNTGTIDDPNKAYPFLEIDSLRLEE-------LD 245
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
+V+TH HLDH+G +P + GY GP+Y+T PTR L +ML+D V R G F+
Sbjct: 246 GVVVTHAHLDHVGLVPILYKY-GYRGPVYVTKPTRELMIVMLKDLIDV-TRRSGRYIPFS 303
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYN 179
I+ + I VD + V D+++ Y AGH+LG+A+ + +G +VYTGD+
Sbjct: 304 ERDISTMLLHTITVDYDEVTDVAPDIKLTMYNAGHILGSAIVHLHIGMGLHNIVYTGDFK 363
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
+ R L A +++ LI E
Sbjct: 364 YSETRLLNKANTVFPRVETLIME 386
>gi|218884598|ref|YP_002428980.1| mRNA 3'-end polyadenylation factor [Desulfurococcus kamchatkensis
1221n]
gi|218766214|gb|ACL11613.1| mRNA 3'-end polyadenylation factor [Desulfurococcus kamchatkensis
1221n]
Length = 647
Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats.
Identities = 67/203 (33%), Positives = 107/203 (52%), Gaps = 17/203 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYP----DFSRISKSCDFNNAID 61
LG +EVG+S ++V +I+ D G++ D ++ YP D R+ + +D
Sbjct: 193 LGGFREVGRSAILVETRESKILLDLGLNTGTIDDPNKAYPFLEIDSLRLEE-------LD 245
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
+V+TH HLDH+G +P + GY GP+Y+T PTR L +ML+D V R G F+
Sbjct: 246 GVVVTHAHLDHVGLVPILYKY-GYRGPVYVTKPTRELMIVMLKDLIDV-TRRSGRYIPFS 303
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYN 179
I+ + I VD + V D+++ Y AGH+LG+A+ + +G +VYTGD+
Sbjct: 304 ERDISTMLLHTITVDYDEVTDVAPDIKLTMYNAGHILGSAIVHLHIGMGLHNIVYTGDFK 363
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
+ R L A +++ LI E
Sbjct: 364 YSETRLLNKANTVFPRVETLIME 386
>gi|297527491|ref|YP_003669515.1| KH-domain/beta-lactamase-domain-containing protein [Staphylothermus
hellenicus DSM 12710]
gi|297256407|gb|ADI32616.1| KH-domain/beta-lactamase-domain protein [Staphylothermus hellenicus
DSM 12710]
Length = 647
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 66/203 (32%), Positives = 108/203 (53%), Gaps = 17/203 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMA----YNDHRQYP--DFSRISKSCDFNNAID 61
LG EVG+S ++V R++ D G+++ YN R YP D +++ S +D
Sbjct: 187 LGGFMEVGRSAILVETRESRVLLDLGINVGAGTDYN--RAYPFIDIDQLNLS-----ELD 239
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
+++TH HLDHIG +P + GY GP+Y+T PTR L IM++D +V R G+ ++
Sbjct: 240 AVIVTHAHLDHIGLVPLLYKY-GYRGPLYVTKPTRELMVIMIKDLIEV-TQREGKYLPYS 297
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYN 179
+ + I ++ V D+++ Y AGH+LG+A+ + +G +VYTGD+
Sbjct: 298 EKDLMTAILHTIPLEYGDVTDVAPDIKVTMYNAGHILGSAIVHLHIGMGLHNIVYTGDFK 357
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
P R L A +++ LI E
Sbjct: 358 YAPTRLLNRAEDKFPRVETLIME 380
>gi|156936804|ref|YP_001434600.1| beta-lactamase domain-containing protein [Ignicoccus hospitalis
KIN4/I]
gi|156565788|gb|ABU81193.1| beta-lactamase domain protein [Ignicoccus hospitalis KIN4/I]
Length = 652
Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats.
Identities = 60/198 (30%), Positives = 110/198 (55%), Gaps = 10/198 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LGA +EVG+S +++ +++ D G ++ +Y+ + +P + + +D +++T
Sbjct: 187 LGAFKEVGRSAILLETKESKVLLDFGANVGSYDPQKHFPKVEEVPI-----DELDAVIVT 241
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH G +P+ + GY GP+Y+T PTR L ++ +DY +V + G+ +T I
Sbjct: 242 HAHLDHCGLVPWLYKY-GYRGPVYVTQPTRDLMYLVQKDYIEV-ARKEGKPVPYTESDIN 299
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
+ + IA++ + V D+++ Y AGH+LG+AM + VG+ +VYTGD+ R
Sbjct: 300 SMLLRTIALNYGEVTDVAPDIKLTFYNAGHILGSAMAHLHVGEGLFNLVYTGDFKYGYTR 359
Query: 185 HLGAARIDRLQLDLLITE 202
L A +++ +I E
Sbjct: 360 LLDKANTQFPRVEAVIME 377
>gi|126465835|ref|YP_001040944.1| beta-lactamase domain-containing protein [Staphylothermus marinus
F1]
gi|126014658|gb|ABN70036.1| beta-lactamase domain protein [Staphylothermus marinus F1]
Length = 652
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 66/201 (32%), Positives = 109/201 (54%), Gaps = 13/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDH-RQYP--DFSRISKSCDFNNAIDCI 63
LG EVG+S ++V R++ D G+++ A D+ R YP D +++ S +D +
Sbjct: 192 LGGFMEVGRSAILVETRESRVLLDLGINVGAGTDYDRAYPFIDIDQLNLS-----ELDAV 246
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
++TH HLDHIG +P + GY GP+Y+T PTR L IM++D +V R G+ ++
Sbjct: 247 IVTHAHLDHIGLVPLLYKY-GYRGPLYVTKPTRELMVIMIKDLIEV-TQREGKYLPYSEK 304
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMT 181
+ + I ++ V D+++ Y AGH+LG+A+ + +G +VYTGD+
Sbjct: 305 DLMTTILHTIPLEYGDVTDVAPDIKVTMYNAGHILGSAIVHLHIGMGLHNIVYTGDFKYA 364
Query: 182 PDRHLGAARIDRLQLDLLITE 202
P R L A +++ LI E
Sbjct: 365 PTRLLNRAEDKFPRVETLIME 385
>gi|46107872|ref|XP_380995.1| hypothetical protein FG00819.1 [Gibberella zeae PH-1]
Length = 864
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 109/226 (48%), Gaps = 30/226 (13%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP----------DFSRISKSCD 55
L LG G EVG+SC ++ GK +M D G H AY+ P D IS
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYDDFDLSTVDVLLISHPVQ 87
Query: 56 FNNAIDC---------------IVITH-FHLDHIGALPFFTEICGYNGPIYMTYPTRALA 99
A+ C ++I H FH+DH +LP+ + G ++MT+PT+A+
Sbjct: 88 DTTALYCHGQYCACVMSISMIMLLIGHSFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIY 147
Query: 100 PIMLEDYRKVLVDRRGEVEQ--FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHV 157
+++D +V Q +T ++ A+D T ++I Y AGHV
Sbjct: 148 KWLIQDSVRVGNTSSNPTTQPVYTEQDHLNTFPQIEAIDY-HTTHTISSIRITPYPAGHV 206
Query: 158 LGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDR-LQLDLLITE 202
LGAAMF ++ + +TGDY+ DRHL +A + + +++D+LITE
Sbjct: 207 LGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGVKIDVLITE 252
>gi|298674377|ref|YP_003726127.1| KH-domain/beta-lactamase-domain-containing protein [Methanohalobium
evestigatum Z-7303]
gi|298287365|gb|ADI73331.1| KH-domain/beta-lactamase-domain protein [Methanohalobium
evestigatum Z-7303]
Length = 638
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 110/197 (55%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC +++ R+M DCG+++ +D P + + ++ + +D +++TH
Sbjct: 186 LGGCKEVGRSCFILSTPESRVMIDCGVNIG-SDENMTP-YLYVPEAYPLSQ-LDAVILTH 242
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P + GY GP+Y T PTR L+ ++ DY V + G + + S + E
Sbjct: 243 AHLDHSGFIPLLYK-YGYQGPVYCTLPTRDLSALLQLDYIDV-AGKEGRIVPYESSQVRE 300
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
+K I +D ++ + D+++ + +GH+LG+A+ + +GD +V+TGDY R
Sbjct: 301 ALKHTITLDFEEVTDIAPDIKLTFHNSGHILGSAIAHFHIGDGLHNVVFTGDYKYGSTRL 360
Query: 186 LGAARIDRLQLDLLITE 202
A +++ ++TE
Sbjct: 361 FDPAVNKFPRVETVVTE 377
>gi|254168266|ref|ZP_04875112.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|254168398|ref|ZP_04875243.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|289595800|ref|YP_003482496.1| KH-domain/beta-lactamase-domain protein [Aciduliprofundum boonei
T469]
gi|197622679|gb|EDY35249.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|197622775|gb|EDY35344.1| RNA-metabolising metallo-beta-lactamase family [Aciduliprofundum
boonei T469]
gi|289533587|gb|ADD07934.1| KH-domain/beta-lactamase-domain protein [Aciduliprofundum boonei
T469]
Length = 647
Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats.
Identities = 60/181 (33%), Positives = 99/181 (54%), Gaps = 13/181 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND---------HRQYPDFSRISKSCDFNN 58
LG +EVG+S ++ R++ DCG+++A +D + P+ S
Sbjct: 185 LGGYREVGRSATLIMTRTSRVLVDCGLNVAVSDKADPWSGAPYLYVPEVWDASDPEKPFK 244
Query: 59 AIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVE 118
ID +V+TH HLDH+G +P + Y+GP+YMT PTR LA ++L DY KV G+
Sbjct: 245 HIDAVVVTHAHLDHVGLVPLLFKY-NYDGPVYMTAPTRDLAAMLLIDYVKV-AQSEGKKV 302
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTG 176
+ S HI E +K I + +T + D+++ + AGH+LG+++ + +G+ +V TG
Sbjct: 303 PYESKHIKEMIKHTITLKYGETTDIAPDIRLTFHNAGHILGSSVSHFHIGEGLYNIVITG 362
Query: 177 D 177
D
Sbjct: 363 D 363
>gi|355680849|gb|AER96661.1| cleavage and polyadenylation specific factor 3, 73kDa [Mustela
putorius furo]
Length = 600
Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
ID ++I+HFHLDH GALP+F + + G +MT+ T+A+ +L DY KV + +
Sbjct: 13 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDML 71
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+T + E M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++
Sbjct: 72 YTETDLEESMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFS 130
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
DRHL AA I ++ D+LI E
Sbjct: 131 RQEDRHLMAAEIPNIKPDILIIE 153
>gi|67479721|ref|XP_655242.1| cleavage and polyadenylation specificity factor 73 kDa subunit
[Entamoeba histolytica HM-1:IMSS]
gi|56472366|gb|EAL49856.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba histolytica HM-1:IMSS]
gi|449703858|gb|EMD44220.1| cleavage and polyadenylation specificity factor 73 kDa subunit,
putative [Entamoeba histolytica KU27]
Length = 755
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 58/196 (29%), Positives = 107/196 (54%), Gaps = 11/196 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAY-NDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LGAG+EVG+SC ++ G IM DCG+H A + P F ++I+ + +T
Sbjct: 26 LGAGREVGRSCFILKYMGHNIMLDCGVHPAKPHGEAALPLFEHADI-----DSIELLCVT 80
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H+H+DH +LP+ + G + MT PT+ + + +++ ++ ++ S +
Sbjct: 81 HYHVDHCASLPYLILERQFKGKVLMTPPTKEIFGELFKEFHQM----SSTIQPPKSVNPK 136
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
E + ++ + + +Q ++I + AGH+LGAAMF ++ ++YTGD++ DRHL
Sbjct: 137 EVIDRIDTIKFHE-LQEYNGMKIWCFNAGHILGAAMFCIEINGVKILYTGDFSGETDRHL 195
Query: 187 GAARIDRLQLDLLITE 202
AA + Q+D+++ E
Sbjct: 196 QAAEVPPFQIDVMMCE 211
>gi|82596170|ref|XP_726151.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Plasmodium yoelii yoelii 17XNL]
gi|23481438|gb|EAA17716.1| cleavage and polyadenylation specificity factor, 73 kDa subunit
[Plasmodium yoelii yoelii]
Length = 942
Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats.
Identities = 68/255 (26%), Positives = 115/255 (45%), Gaps = 63/255 (24%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP--DFSRISKSCDFNNAI 60
I+ + LG EVG+SCV++ IM DCG+H A+ P D ISK I
Sbjct: 4 INIVCLGGASEVGRSCVIIESEKTSIMLDCGIHPAFMGIGCLPIYDAYDISK-------I 56
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV----------- 109
D +ITHFH+DH GALP+ + G ++MT T+++ ++ DY ++
Sbjct: 57 DVCLITHFHMDHSGALPYLINKTRFKGRVFMTEATKSICYLLWSDYARIEKCMNLMNKNK 116
Query: 110 --------------------------------------LVDRRGEVEQ----FTSDHIAE 127
+VD+ + + D I
Sbjct: 117 SMKSKKELEDNGSDGIDNINNDGYISNDDNDDAYYDNYIVDKNNDENSNNVLYDDDDIEA 176
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M+ + ++ + ++++ +++ AY AGHV+GA MF ++ + ++YTGDY+ DRH+
Sbjct: 177 TMELIETINFHENIELE-NVKFTAYRAGHVIGACMFLVEINNIRLLYTGDYSREIDRHIP 235
Query: 188 AARIDRLQLDLLITE 202
A I + + +LI E
Sbjct: 236 IAEIPNIDVHVLICE 250
>gi|332796323|ref|YP_004457823.1| beta-lactamase domain-containing protein [Acidianus hospitalis W1]
gi|332694058|gb|AEE93525.1| beta-lactamase domain protein [Acidianus hospitalis W1]
Length = 638
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 63/200 (31%), Positives = 108/200 (54%), Gaps = 12/200 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYN-DHRQYP--DFSRISKSCDFNNAIDCIV 64
LGA QE+G+S ++V R++ D G++ + N R +P D ++ +D +V
Sbjct: 183 LGAFQEIGRSAILVETPESRVLLDTGVNPSVNFGERMFPKLDIDQLRLE-----DLDAVV 237
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
ITH HLDH G +P+ + GY GP+Y T PTR + +M D V ++ G +++
Sbjct: 238 ITHAHLDHCGMVPYLFKY-GYEGPVYTTPPTRDVMALMQLDLLDV-AEKDGRPLPYSAKE 295
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTP 182
+ + + I +D ++ + D+++ Y AGH+LG+AM + +G+ +VYTGD+
Sbjct: 296 VRKELLHTITLDYEEVTDIAPDIRLTFYNAGHILGSAMVHLHIGEGTHNIVYTGDFKYAK 355
Query: 183 DRHLGAARIDRLQLDLLITE 202
R L A + ++D LI E
Sbjct: 356 TRLLDRATSEFPKVDTLIME 375
>gi|336477059|ref|YP_004616200.1| KH-domain/beta-lactamase-domain-containing protein [Methanosalsum
zhilinae DSM 4017]
gi|335930440|gb|AEH60981.1| KH-domain/beta-lactamase-domain protein [Methanosalsum zhilinae DSM
4017]
Length = 636
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC V++ R+M DCG+++ +D P + + ++ N +D +VITH
Sbjct: 186 LGGCREVGRSCFVLSTPESRVMVDCGVNVG-SDENMTP-YLYVPEAYPLNQ-LDAVVITH 242
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P + GY GPIY T PTR L ++ DY V R + S I E
Sbjct: 243 AHLDHQGLVPLLYK-YGYEGPIYCTPPTRDLMALLQLDYIDVAA-RDARKIPYESADIRE 300
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
+K I +D ++ + D+++ + AGH+LG+++ + +GD +V TGDY P R
Sbjct: 301 VLKHTITLDYEEVTDIAPDIKLTFHNAGHILGSSISHFHIGDGRHNIVMTGDYKYGPTRL 360
Query: 186 LGAARIDRLQLDLLITE 202
A +++ +ITE
Sbjct: 361 FDPAVNKFPRVETVITE 377
>gi|13541495|ref|NP_111183.1| metal-dependent RNase [Thermoplasma volcanium GSS1]
gi|14324879|dbj|BAB59805.1| cleavage and polyadenylation specificity factor [Thermoplasma
volcanium GSS1]
Length = 639
Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 99/185 (53%), Gaps = 19/185 (10%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQY--------PDFSRISKSC 54
+ LG EVG+S +V+ +++ DCGM D + P+ +S
Sbjct: 180 VRLTALGGHSEVGRSATLVSTKNSKVLIDCGMMNVGPDADPWDAAPYLYVPEVQPLS--- 236
Query: 55 DFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRR 114
+ID +++TH HLDH G LP + GY+GP+YMT PTR LA ++ +DY KV
Sbjct: 237 ----SIDAVILTHAHLDHSGLLPLLFK-YGYDGPVYMTQPTRDLAVLLQDDYIKVARMEG 291
Query: 115 GEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AM 172
G+V + S +I E +K I + +T + +D+++ Y AGH+LG+A + +GD +
Sbjct: 292 GKV-PYESKYIREELKHTITLRYGETTDITRDMRLTFYNAGHILGSASVHLHIGDGLYNV 350
Query: 173 VYTGD 177
V +GD
Sbjct: 351 VLSGD 355
>gi|347523995|ref|YP_004781565.1| RNA-metabolising metallo-beta-lactamase [Pyrolobus fumarii 1A]
gi|343460877|gb|AEM39313.1| RNA-metabolising metallo-beta-lactamase [Pyrolobus fumarii 1A]
Length = 421
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 103/203 (50%), Gaps = 14/203 (6%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
M+++ VLG +EVG++ + + G+ ++ D G++ D P F+R D +
Sbjct: 1 MSVEVEVLGGAREVGRASIALRYKGRVLLLDAGVNF---DEEDKPVFARTVPPRD----V 53
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D IV+TH HLDHIG P + Y PI T PT +A +M ED+ K+ G +
Sbjct: 54 DGIVLTHAHLDHIGTAPAY--YITYQPPIIATKPTFEMARLMWEDFLKL----NGYYSMY 107
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+ M+ + ++V + + Y AGH+ G+AM Y +VG ++YTGD N
Sbjct: 108 EDAEVKRLMEAAVYARYYSPIRVGDEFSVTLYPAGHIPGSAMVYVEVGGRRILYTGDVNT 167
Query: 181 TPDRHLGAARIDRL-QLDLLITE 202
+ + AR+D + +DL+I E
Sbjct: 168 IYTKLMEPARVDGMPPVDLMIME 190
>gi|148702077|gb|EDL34024.1| cleavage and polyadenylation specificity factor 3, isoform CRA_a
[Mus musculus]
Length = 261
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 87/143 (60%), Gaps = 2/143 (1%)
Query: 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
ID ++I+HFHLDH GALP+F + + G +MT+ T+A+ +L DY KV + +
Sbjct: 14 IDLLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDML 72
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+T + E M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++
Sbjct: 73 YTETDLEESMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFS 131
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
DRHL AA I ++ D+LI E
Sbjct: 132 RQEDRHLMAAEIPNIKPDILIIE 154
>gi|68076685|ref|XP_680262.1| cleavage and polyadenylation specifity factor protein, [Plasmodium
berghei strain ANKA]
gi|56501171|emb|CAH99756.1| cleavage and polyadenylation specifity factor protein, putative
[Plasmodium berghei]
Length = 888
Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats.
Identities = 69/256 (26%), Positives = 114/256 (44%), Gaps = 64/256 (25%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP--DFSRISKSCDFNNAI 60
I+ + LG EVG+SCV++ IM DCG+H A+ P D ISK I
Sbjct: 4 INIVCLGGASEVGRSCVIIESEKTSIMLDCGIHPAFMGIGCLPIYDAYDISK-------I 56
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV----------- 109
D +ITHFH+DH GALP+ + G ++MT T+ + ++ DY ++
Sbjct: 57 DVCLITHFHMDHSGALPYLINKTRFKGRVFMTEATKGICYLLWSDYARIEKCMNLMNKNK 116
Query: 110 ---------------------------------------LVDRRGEVEQ----FTSDHIA 126
+VD+ + + D I
Sbjct: 117 SMKSKKELEDNGSDGIDNNINNDGYISNDDNDDAYYDNYIVDKNNDENSNNVLYDDDDID 176
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
M+ + V+ + ++++ +++ AY AGHV+GA MF ++ + ++YTGDY+ DRH+
Sbjct: 177 TTMELIETVNFHENIELE-NVKFTAYRAGHVIGACMFLVEINNIRLLYTGDYSREIDRHI 235
Query: 187 GAARIDRLQLDLLITE 202
A I + + +LI E
Sbjct: 236 PIAEIPNIDVHVLICE 251
>gi|374327735|ref|YP_005085935.1| mRNA 3'-end processing factor [Pyrobaculum sp. 1860]
gi|356643004|gb|AET33683.1| mRNA 3'-end processing factor, conjectural [Pyrobaculum sp. 1860]
Length = 644
Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 107/203 (52%), Gaps = 12/203 (5%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMA-YNDHRQYPDFSRISKSCDFNNAID 61
I LGA EVG+S ++V+ ++ DCG+ Y++ D I K +D
Sbjct: 184 ITVTFLGAAMEVGRSAILVSTTESNVLLDCGLKPGQYDEDFPLLDLVDIDK-------LD 236
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
+V+TH H+DH+G LP + GY GP+YMT PT+ A I+L DY + L +R G F+
Sbjct: 237 AVVLTHAHMDHVGCLPLLFK-YGYRGPVYMTDPTKYQAFILLSDYVE-LKEREGLQPSFS 294
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYN 179
I + I +D ++ + D+++ Y AGH +G+AM + +G+ ++YTGD+
Sbjct: 295 MADIEAVIYHTITLDYEEVTDIAPDIKLTFYDAGHEIGSAMAHLHIGNGRYNILYTGDFK 354
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
R L A ++++LI E
Sbjct: 355 YGKTRLLNRAVNKFKRVEMLIME 377
>gi|340521586|gb|EGR51820.1| predicted protein [Trichoderma reesei QM6a]
Length = 887
Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/238 (28%), Positives = 112/238 (47%), Gaps = 49/238 (20%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P + DF+ + +D ++
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYD------DFDLSTVDVLL 81
Query: 65 ITH-------------------------------------FHLDHIGALPFFTEICGYNG 87
I+H FH+DH +LP+ + G
Sbjct: 82 ISHEGKRACSIYLHSDARHVCAPKQCLFICLSPLLTRGDSFHIDHAASLPYVLAKTNFRG 141
Query: 88 PIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF--TSDHIAECMKKVIAVDLKQTVQVDK 145
++MT+PT+A+ +++D +V Q DH+ ++ A+D T
Sbjct: 142 RVFMTHPTKAIYKWLIQDSVRVGNTASNSATQLYTEQDHL-NTFPQIEAIDY-HTTHTIS 199
Query: 146 DLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDR-LQLDLLITE 202
++I Y AGHVLGAAMF ++ + +TGDY+ DRHL +A + + +++D+LITE
Sbjct: 200 SIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQDRHLVSAEVPKGIKIDVLITE 257
>gi|16082538|ref|NP_394086.1| metal-dependent RNase [Thermoplasma acidophilum DSM 1728]
Length = 639
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 62/180 (34%), Positives = 96/180 (53%), Gaps = 19/180 (10%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQY--------PDFSRISKSCDFNNA 59
LG EVG+S +V+ +++ DCGM D + P+ +S
Sbjct: 185 LGGHSEVGRSATLVSTKNSKVLIDCGMMNVGPDADPWDAAPYLYVPEVQPLS-------T 237
Query: 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
ID +++TH HLDH G LP + GY+GP+YMT PTR LA ++ DY KV G+V
Sbjct: 238 IDAVILTHAHLDHSGLLPLLFKY-GYDGPVYMTPPTRDLAALLQNDYIKVARMEGGKVP- 295
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGD 177
+ S +I E +K I + +T + +D+++ Y AGH+LG+A + +GD +V +GD
Sbjct: 296 YESKYIREELKHTITLRYGETTDITRDMRLTFYNAGHILGSASGHLHIGDGLYNVVLSGD 355
>gi|15920543|ref|NP_376212.1| cleavage and polyadenylation specificity factor large subunit
[Sulfolobus tokodaii str. 7]
gi|342306155|dbj|BAK54244.1| putative ribonuclease J [Sulfolobus tokodaii str. 7]
Length = 637
Score = 106 bits (264), Expect = 7e-21, Method: Composition-based stats.
Identities = 64/201 (31%), Positives = 109/201 (54%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMH--MAYNDHRQYP--DFSRISKSCDFNNAIDCI 63
LG QEVG+S V+V +++ D G++ ++Y + + +P D ++ ID +
Sbjct: 184 LGGFQEVGRSAVLVETPESKVLLDVGLNPSVSYGE-KLFPKLDIDQVRLE-----DIDAV 237
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
VITH HLDH G +P + GYNGP+Y T PTR + +M D V ++ G +T+
Sbjct: 238 VITHAHLDHCGMVPLLFKY-GYNGPVYTTAPTRDIMALMQLDALDV-AEKEGRPLPYTAK 295
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMT 181
+ + + I +D ++ + D+++ Y AGH+LG+AM + +GD +VYTGD+
Sbjct: 296 EVRKELLHTITLDYEEVTDIAPDIKLTFYNAGHILGSAMAHLHIGDGTHNIVYTGDFKYA 355
Query: 182 PDRHLGAARIDRLQLDLLITE 202
+ L A + ++D +I E
Sbjct: 356 RTKLLDKANDEFPRVDTIIME 376
>gi|296242984|ref|YP_003650471.1| KH-domain/beta-lactamase-domain-containing protein [Thermosphaera
aggregans DSM 11486]
gi|296095568|gb|ADG91519.1| KH-domain/beta-lactamase-domain protein [Thermosphaera aggregans
DSM 11486]
Length = 651
Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats.
Identities = 64/197 (32%), Positives = 102/197 (51%), Gaps = 5/197 (2%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+S ++V R++ D G++ D + F I +D +++TH
Sbjct: 193 LGGFREVGRSSILVETRESRLLLDMGINTGVMDD-PFKAFPYIDVDSLKLEELDGVIVTH 251
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH+G +P + GY GP+Y+T PTR L +ML+D +V R G FT +
Sbjct: 252 SHLDHVGLVPILYKY-GYRGPLYVTKPTRELMIVMLKDLIEV-SRRSGRYLPFTEKDLTT 309
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+ I V+ + V D+++ Y AGH+LG+A+ + VG +VYTGD+ R
Sbjct: 310 MILHTITVEYDEVTDVAPDIKLTMYNAGHILGSAIVHLHVGMGLHNIVYTGDFKYASTRL 369
Query: 186 LGAARIDRLQLDLLITE 202
L A + +++ LI E
Sbjct: 370 LDRANTEFPRVETLIME 386
>gi|359414339|ref|ZP_09206804.1| RNA-metabolising metallo-beta-lactamase [Clostridium sp. DL-VIII]
gi|357173223|gb|EHJ01398.1| RNA-metabolising metallo-beta-lactamase [Clostridium sp. DL-VIII]
Length = 863
Score = 105 bits (263), Expect = 8e-21, Method: Composition-based stats.
Identities = 58/196 (29%), Positives = 102/196 (52%), Gaps = 8/196 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG S ++V IN K I+ D G+ + + P+F I +D I+I+H
Sbjct: 21 LGGALEVGGSSILVKINNKNILLDAGIRQSASKD-SVPNFRAIQNY----GGLDAIIISH 75
Query: 68 FHLDHIGALPFFTEICGY-NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
HLDHIG LP ++ Y IYM T+ L ++L D K++ +R E+ + +
Sbjct: 76 AHLDHIGCLPIISK--EYPEAKIYMNNMTKDLVRVLLYDSLKIMNNRDAEIPLYAEGDVV 133
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ ++ ++ + + +D+ I Y AGH+ GA+ Y + + A+ Y+GD+++ R +
Sbjct: 134 STLNRIFTINYEVKFPIFEDIHITFYNAGHIAGASCVYIQSKEGALFYSGDFSVFSQRTV 193
Query: 187 GAARIDRLQLDLLITE 202
++ RL+ D+ I E
Sbjct: 194 EGTKLPRLRPDVAILE 209
>gi|255524630|ref|ZP_05391583.1| beta-lactamase domain protein [Clostridium carboxidivorans P7]
gi|255511654|gb|EET87941.1| beta-lactamase domain protein [Clostridium carboxidivorans P7]
Length = 827
Score = 105 bits (263), Expect = 9e-21, Method: Composition-based stats.
Identities = 56/196 (28%), Positives = 102/196 (52%), Gaps = 8/196 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG SC+++ I K I+ DCG+ + PDF I + ID I+I+H
Sbjct: 6 LGGAHEVGGSCILLKIYNKNILLDCGIRQGASKD-PLPDFRTIQE----QGGIDAIIISH 60
Query: 68 FHLDHIGALPFFTEICGYNGP-IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H+DHIG+LP ++ Y G IY T+ L ++L D K++ +R E+ + +
Sbjct: 61 AHMDHIGSLPIISK--EYPGAKIYANNMTKDLMKVLLYDSLKIMKNREAEIPLYAEVDVE 118
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ ++ ++ + +D++I Y AGH+ GA+ Y + ++ Y+GD+++ + +
Sbjct: 119 NMLNRIFTINYMVEFPIFEDIKITFYTAGHIAGASCVYITTPEGSLFYSGDFSVFSQKTV 178
Query: 187 GAARIDRLQLDLLITE 202
++ +L+ D I E
Sbjct: 179 EGLKVPKLRPDAAIFE 194
>gi|159111399|ref|XP_001705931.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia ATCC 50803]
gi|157434022|gb|EDO78257.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia ATCC 50803]
Length = 757
Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 109/215 (50%), Gaps = 28/215 (13%)
Query: 8 LGAGQEVGKSCVVVTIN----GKRIMFDCGMHMAYNDHRQYPDFSRIS--KSCDFNNAID 61
LGAG EVG+SC +++ IM DCG+H A ++ R Y + D+ + +
Sbjct: 34 LGAGNEVGRSCFILSYQRSGCSGSIMLDCGLHPALSETRDYVAIQALPFFDLEDYVSTLS 93
Query: 62 CIVITHFHLDHIGALPFFTEICG------------YNGPIYMTYPTRALAPIMLEDYRKV 109
I+ITHFH DHI ALP+ Y P+YMT PT L+ +++
Sbjct: 94 LILITHFHNDHIAALPYLLRCLRDRAVKEGKPELHYIPPVYMTAPT-------LKIFKES 146
Query: 110 LVDRRGEVEQFTSDHIAECMKKV-IAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVG 168
+ D + + +T + + K + QT +V+ + A AGHV+GAAMF+ +
Sbjct: 147 VTDVISQTKLYTHEDVEFMAKNTKLLTSFYQTERVN-GISFTAMPAGHVIGAAMFHISID 205
Query: 169 DSAMVYTGDYNMTP-DRHLGAARIDRLQLDLLITE 202
+ +YTGD++ P DRHL A +++LDLLI E
Sbjct: 206 NFHALYTGDFSCEPEDRHLQPATFPQVKLDLLIIE 240
>gi|325958080|ref|YP_004289546.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium sp. AL-21]
gi|325329512|gb|ADZ08574.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
AL-21]
Length = 634
Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats.
Identities = 62/198 (31%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQ-YPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG+S + + + +IM DCG+++A +D + YP + D +D ++I+
Sbjct: 184 LGGFREVGRSSLFLQTSNSKIMLDCGVNVAGSDDKSSYPYLNVPEFVLD---DLDAVIIS 240
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH G LP+ GY GP+Y T PTR L ++ D+ + R F H+
Sbjct: 241 HAHLDHSGFLPYLYHY-GYEGPVYCTTPTRDLMTLLQLDHIDI-AHREDNPLPFNIKHVK 298
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
+ +K I +D + + D+++ + AGH+LG+A+ + +GD VYTGD+ R
Sbjct: 299 KSIKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAITHMHIGDGQHNFVYTGDFKYERSR 358
Query: 185 HLGAARIDRLQLDLLITE 202
L A +++ L+ E
Sbjct: 359 LLEPAVSKFPRIESLVME 376
>gi|255513745|gb|EET90010.1| beta-lactamase domain protein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 655
Score = 105 bits (262), Expect = 1e-20, Method: Composition-based stats.
Identities = 65/210 (30%), Positives = 107/210 (50%), Gaps = 22/210 (10%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGM-------------HMAYNDHRQYPDFSRISKSC 54
LG +EVG+SC+++ +I+ DCG+ + N Y D + IS
Sbjct: 195 LGGFREVGRSCLLLETPNSKIIIDCGISPEPGIKGLDANANQEGNKAFPYIDSANISI-- 252
Query: 55 DFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRR 114
N ID +++TH H+DH+G +P+ + GY GP+Y T PTR LA ++L DY + LV +
Sbjct: 253 ---NEIDAVILTHGHMDHMGFVPYLFKY-GYEGPVYCTPPTRDLAALLLTDYTR-LVQKS 307
Query: 115 GEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--M 172
G + I + + +I D + + +L++ + AGH+LG+A + VG+ +
Sbjct: 308 GGTPLYGEKDIKKMLLHMITRDYGEVTNITDELKLTYHNAGHILGSATVHLHVGEGMYNI 367
Query: 173 VYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
V+TGD R L A + ++D L E
Sbjct: 368 VHTGDMKYGFTRLLDPASVKYPRVDALFIE 397
>gi|385775961|ref|YP_005648529.1| beta-lactamase [Sulfolobus islandicus REY15A]
gi|323474709|gb|ADX85315.1| beta-lactamase domain protein [Sulfolobus islandicus REY15A]
Length = 638
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 5/197 (2%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+S V+V +++ D G++ + N + F R+ +D +VITH
Sbjct: 187 LGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGE-KLFPRLDIDQLKIEELDAVVITH 245
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +PF + GY GP+Y T PTR + +M D V V++ G+ +++ + +
Sbjct: 246 AHLDHCGMVPFLFKY-GYEGPVYTTVPTRDIMALMQLDSLDV-VEKEGKPLPYSAKEVRK 303
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+ I +D + + D+++ Y AGH+LG+AM + +GD +VYTGD+ +
Sbjct: 304 ELLHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGKHNIVYTGDFKYAKTKL 363
Query: 186 LGAARIDRLQLDLLITE 202
L A + ++D LI E
Sbjct: 364 LDKANTEFPRVDTLIME 380
>gi|410721908|ref|ZP_11361230.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
Maddingley MBC34]
gi|410598026|gb|EKQ52618.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
Maddingley MBC34]
Length = 634
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 61/198 (30%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQ-YPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG+S + + + +I+ DCG+++A +D + YP + D +D ++I+
Sbjct: 184 LGGFREVGRSSIFMQTSNSKILLDCGVNVAGSDDKSSYPYLNVPEFVLD---NLDAVIIS 240
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH G LP+ GY GP+Y T PTR L ++ D+ + R F H+
Sbjct: 241 HAHLDHSGFLPYLFHY-GYEGPVYCTTPTRDLMTLLQLDHIDI-AHREDSPLPFNVKHVK 298
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
+ +K I +D + + D+++ + AGH+LG+A+ + +GD VYTGD+ R
Sbjct: 299 KSIKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAITHMHIGDGQHNFVYTGDFKYERSR 358
Query: 185 HLGAARIDRLQLDLLITE 202
L A +++ L+ E
Sbjct: 359 LLEPAVSKFPRIESLVME 376
>gi|385773323|ref|YP_005645889.1| beta-lactamase [Sulfolobus islandicus HVE10/4]
gi|323477437|gb|ADX82675.1| beta-lactamase domain protein [Sulfolobus islandicus HVE10/4]
Length = 638
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 5/197 (2%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+S V+V +++ D G++ + N + F R+ +D +VITH
Sbjct: 187 LGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGE-KLFPRLDIDQLKIEELDAVVITH 245
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +PF + GY GP+Y T PTR + +M D V V++ G+ +++ + +
Sbjct: 246 AHLDHCGMVPFLFKY-GYEGPVYTTVPTRDIMALMQLDSLDV-VEKEGKPLPYSAKEVRK 303
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+ I +D + + D+++ Y AGH+LG+AM + +GD +VYTGD+ +
Sbjct: 304 ELLHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGKHNIVYTGDFKYAKTKL 363
Query: 186 LGAARIDRLQLDLLITE 202
L A + ++D LI E
Sbjct: 364 LDKANTEFPRVDTLIME 380
>gi|308162204|gb|EFO64613.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia P15]
Length = 737
Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 108/215 (50%), Gaps = 28/215 (13%)
Query: 8 LGAGQEVGKSCVVVTIN----GKRIMFDCGMHMAYNDHRQYPDFSRIS--KSCDFNNAID 61
LGAG EVG+SC +++ IM DCG+H A ++ R Y + D+ + +
Sbjct: 12 LGAGNEVGRSCFILSYQRSGCSGSIMLDCGLHPALSETRDYVAIQALPFFDLEDYVSTLS 71
Query: 62 CIVITHFHLDHIGALPFFTEICG------------YNGPIYMTYPTRALAPIMLEDYRKV 109
I+ITHFH DHI ALP+ Y PIYMT PT L+ +++
Sbjct: 72 LILITHFHNDHIAALPYLLRCLRDRAVKEGKPELHYIPPIYMTAPT-------LKIFKES 124
Query: 110 LVDRRGEVEQFTSDHIAECMKKV-IAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVG 168
+ D + + +T + + K + QT +V + A AGHV+GAAMF+ +
Sbjct: 125 VTDVISQTKLYTHEDVDFMAKNTKLLTSFYQTERVS-GISFTAMPAGHVIGAAMFHISID 183
Query: 169 DSAMVYTGDYNMTP-DRHLGAARIDRLQLDLLITE 202
+ +YTGD++ P DRHL A +++LDLLI E
Sbjct: 184 NFHALYTGDFSCEPEDRHLQPATFPQVKLDLLIIE 218
>gi|284161558|ref|YP_003400181.1| RNA-metabolising metallo-beta-lactamase [Archaeoglobus profundus
DSM 5631]
gi|284011555|gb|ADB57508.1| RNA-metabolising metallo-beta-lactamase [Archaeoglobus profundus
DSM 5631]
Length = 631
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/197 (31%), Positives = 105/197 (53%), Gaps = 9/197 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC ++ +I+ +CG++++ N P + I + + +ID +VITH
Sbjct: 183 LGGAREVGRSCYLLQTPNSKILVECGINVSGNQ----PPYLYIPEIQPLD-SIDAVVITH 237
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P + GY GP+Y+T PTR L ++ D+ +V R G + S I
Sbjct: 238 AHLDHCGLVPVLFKY-GYRGPVYLTPPTRDLMVLLQLDFIEV-ASREGTTIPYESHWIRT 295
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I +D + D+++ Y AGH+LG+A+ + +G+ + +TGD+ R
Sbjct: 296 ALKHCITLDYGVVTDIAPDVRLTFYNAGHILGSAIAHFHIGEGLYNIAFTGDFKFERTRL 355
Query: 186 LGAARIDRLQLDLLITE 202
A + +L+ LI E
Sbjct: 356 FDKAETNFPRLEALIME 372
>gi|227827653|ref|YP_002829433.1| beta-lactamase [Sulfolobus islandicus M.14.25]
gi|229584857|ref|YP_002843359.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
M.16.27]
gi|238619821|ref|YP_002914647.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
M.16.4]
gi|227459449|gb|ACP38135.1| beta-lactamase domain protein [Sulfolobus islandicus M.14.25]
gi|228019907|gb|ACP55314.1| beta-lactamase domain protein [Sulfolobus islandicus M.16.27]
gi|238380891|gb|ACR41979.1| beta-lactamase domain protein [Sulfolobus islandicus M.16.4]
Length = 638
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 5/197 (2%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+S V+V +++ D G++ + N + F R+ +D +VITH
Sbjct: 187 LGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGE-KLFPRLDIDQLKIEELDAVVITH 245
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +PF + GY GP+Y T PTR + +M D V V++ G+ +++ + +
Sbjct: 246 AHLDHCGMVPFLFKY-GYEGPVYTTVPTRDIMALMQLDSLDV-VEKEGKPIPYSAKEVRK 303
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+ I +D + + D+++ Y AGH+LG+AM + +GD +VYTGD+ +
Sbjct: 304 ELLHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGKHNIVYTGDFKYAKTKL 363
Query: 186 LGAARIDRLQLDLLITE 202
L A + ++D LI E
Sbjct: 364 LDKANTEFPRVDTLIME 380
>gi|229579166|ref|YP_002837564.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582079|ref|YP_002840478.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
Y.N.15.51]
gi|284997854|ref|YP_003419621.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
L.D.8.5]
gi|228009880|gb|ACP45642.1| beta-lactamase domain protein [Sulfolobus islandicus Y.G.57.14]
gi|228012795|gb|ACP48556.1| beta-lactamase domain protein [Sulfolobus islandicus Y.N.15.51]
gi|284445749|gb|ADB87251.1| beta-lactamase domain protein [Sulfolobus islandicus L.D.8.5]
Length = 638
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 5/197 (2%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+S V+V +++ D G++ + N + F R+ +D +VITH
Sbjct: 187 LGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGE-KLFPRLDIDQLKIEELDAVVITH 245
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +PF + GY GP+Y T PTR + +M D V V++ G+ +++ + +
Sbjct: 246 AHLDHCGMVPFLFKY-GYEGPVYTTVPTRDIMALMQLDSLDV-VEKEGKPIPYSAKEVRK 303
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+ I +D + + D+++ Y AGH+LG+AM + +GD +VYTGD+ +
Sbjct: 304 ELLHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGKHNIVYTGDFKYAKTKL 363
Query: 186 LGAARIDRLQLDLLITE 202
L A + ++D LI E
Sbjct: 364 LDKANTEFPRVDTLIME 380
>gi|227830349|ref|YP_002832129.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
L.S.2.15]
gi|227456797|gb|ACP35484.1| beta-lactamase domain protein [Sulfolobus islandicus L.S.2.15]
Length = 638
Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 5/197 (2%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+S V+V +++ D G++ + N + F R+ +D +VITH
Sbjct: 187 LGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGE-KLFPRLDIDQLKIEELDAVVITH 245
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +PF + GY GP+Y T PTR + +M D V V++ G+ +++ + +
Sbjct: 246 AHLDHCGMVPFLFKY-GYEGPVYTTVPTRDIMALMQLDSLDV-VEKEGKPIPYSAKEVRK 303
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+ I +D + + D+++ Y AGH+LG+AM + +GD +VYTGD+ +
Sbjct: 304 ELLHTITLDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGKHNIVYTGDFKYAKTKL 363
Query: 186 LGAARIDRLQLDLLITE 202
L A + ++D LI E
Sbjct: 364 LDKANTEFPRVDTLIME 380
>gi|10639780|emb|CAC11752.1| conserved hypothetical protein [Thermoplasma acidophilum]
Length = 497
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 97/185 (52%), Gaps = 19/185 (10%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQY--------PDFSRISKSC 54
+ LG EVG+S +V+ +++ DCGM D + P+ +S
Sbjct: 180 VRLTALGGHSEVGRSATLVSTKNSKVLIDCGMMNVGPDADPWDAAPYLYVPEVQPLS--- 236
Query: 55 DFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRR 114
ID +++TH HLDH G LP + GY+GP+YMT PTR LA ++ DY KV
Sbjct: 237 ----TIDAVILTHAHLDHSGLLPLLFK-YGYDGPVYMTPPTRDLAALLQNDYIKVARMEG 291
Query: 115 GEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AM 172
G+V + S +I E +K I + +T + +D+++ Y AGH+LG+A + +GD +
Sbjct: 292 GKV-PYESKYIREELKHTITLRYGETTDITRDMRLTFYNAGHILGSASGHLHIGDGLYNV 350
Query: 173 VYTGD 177
V +GD
Sbjct: 351 VLSGD 355
>gi|333988300|ref|YP_004520907.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium sp. SWAN-1]
gi|333826444|gb|AEG19106.1| KH-domain/beta-lactamase-domain protein [Methanobacterium sp.
SWAN-1]
Length = 634
Score = 104 bits (260), Expect = 2e-20, Method: Composition-based stats.
Identities = 61/193 (31%), Positives = 101/193 (52%), Gaps = 10/193 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMA-YNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG+S + + +I+ DCG+++A +D YP + D +D +VI+
Sbjct: 184 LGGFREVGRSSLFLQTTNSKILLDCGVNVAGTDDKSSYPYLNVPEFVLD---DLDAVVIS 240
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH G LP+ GY GP+Y T PTR L ++ D+ + R + F H+
Sbjct: 241 HAHLDHSGFLPYLYHY-GYEGPVYCTTPTRDLMTLLQLDHIDI-AHREDKPLPFNIKHVK 298
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
+ +K I +D + + D+++ + AGH+LG+A+ + +GD VYTGD+ R
Sbjct: 299 KSIKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAITHMHIGDGQHNFVYTGDFKFERSR 358
Query: 185 HL--GAARIDRLQ 195
L A+ R++
Sbjct: 359 LLEPAVAKFPRIE 371
>gi|70945220|ref|XP_742453.1| cleavage and polyadenylation specifity factor protein, [Plasmodium
chabaudi chabaudi]
gi|56521446|emb|CAH74696.1| cleavage and polyadenylation specifity factor protein, putative
[Plasmodium chabaudi chabaudi]
Length = 564
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/256 (26%), Positives = 115/256 (44%), Gaps = 64/256 (25%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP--DFSRISKSCDFNNAI 60
I+ + LG EVG+SCV++ IM DCG+H A+ P D ISK +
Sbjct: 4 INIVCLGGASEVGRSCVIIESEKTSIMLDCGIHPAFMGIGCLPIYDAYDISK-------V 56
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV----------- 109
D +ITHFH+DH GALP+ + G ++MT T+++ ++ DY ++
Sbjct: 57 DVCLITHFHMDHSGALPYLINKTRFKGRVFMTEATKSICYLLWSDYARIEKCMNLMNKNK 116
Query: 110 ---------------------------------------LVDRRGEVEQ----FTSDHIA 126
+VDR + + D I
Sbjct: 117 SMKSKKELEDNGSDGMENNINNDGYISNDDNDDAYYDNYIVDRDNDENSNNVLYDDDDID 176
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
M+ + V+ + ++++ +++ AY AGHV+GA MF ++ + ++YTGDY+ DRH+
Sbjct: 177 ATMELIETVNFHENIELE-NVKFTAYRAGHVIGACMFLVEINNIRLLYTGDYSREIDRHI 235
Query: 187 GAARIDRLQLDLLITE 202
A I + + +LI E
Sbjct: 236 PIAEIPNIDVHVLICE 251
>gi|159041038|ref|YP_001540290.1| beta-lactamase domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157919873|gb|ABW01300.1| beta-lactamase domain protein [Caldivirga maquilingensis IC-167]
Length = 636
Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 106/197 (53%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA EVG+S +++ + R++ D G+ + + P F I D +N +D +VI+H
Sbjct: 185 LGACFEVGRSALLIETSESRVLLDAGVKPS-GGMDEAPFFDVI----DVDN-LDAVVISH 238
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDHIG LP+ + GY GP+YMT PT+ L I+L DY L RG + +A
Sbjct: 239 AHLDHIGMLPYLYK-YGYKGPVYMTEPTKYLMEILLTDYID-LSSERG-YSYYGLSELAS 295
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
+ + VD + D+++ Y AGH +G+A+ + +G+ +VYTGD+ P R
Sbjct: 296 SLYHSVTVDYGDVTDISPDIKLTLYDAGHEIGSALSHLHIGNGLYNIVYTGDFKYGPSRL 355
Query: 186 LGAARIDRLQLDLLITE 202
L A +++LLI E
Sbjct: 356 LNPAHSIFKRVELLIME 372
>gi|327408312|emb|CCA30123.1| unnamed protein product [Neospora caninum Liverpool]
Length = 1183
Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats.
Identities = 57/151 (37%), Positives = 83/151 (54%), Gaps = 36/151 (23%)
Query: 56 FNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRG 115
F +A+D V+THFHLDH GALP FTE Y+
Sbjct: 359 FTHAVDACVVTHFHLDHCGALPTFTE--------YL------------------------ 386
Query: 116 EVEQFTSDHIAECMKKVIAVDLKQTVQ----VDKDLQIRAYYAGHVLGAAMFYAKVGDSA 171
+V F +A ++ A+ L++ + + LQ+ +YAGHVLGAAMF K+G+++
Sbjct: 387 DVWSFEQSDVAASAERATALRLREAWREGGASEDALQLTPFYAGHVLGAAMFELKIGNTS 446
Query: 172 MVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
+VYTGD+N PDRHLG+A + L+ D+LI+E
Sbjct: 447 VVYTGDFNTIPDRHLGSASLPCLRPDVLISE 477
Score = 52.4 bits (124), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRIS 51
VLGAGQ+VG+S V V + + ++FDCG H+ D R++P F +++
Sbjct: 179 VLGAGQDVGRSAVYVRLGQRCVLFDCGCHLGMKDARKFPLFDKLA 223
>gi|119719226|ref|YP_919721.1| beta-lactamase domain-containing protein [Thermofilum pendens Hrk
5]
gi|119524346|gb|ABL77718.1| beta-lactamase domain protein [Thermofilum pendens Hrk 5]
Length = 639
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 16/176 (9%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHR----QYPDFSRISKSCDFNNAIDCI 63
LGA EVG+S V+V I+ D G+ N P+F ++D +
Sbjct: 185 LGAFHEVGRSAVLVQTPEANILLDAGLKPTGNGDELPLFDLPEFDL--------ESLDAV 236
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
VITH HLDH+GALP + GY GP+YMT PT L+ ++ EDY KV R G+ E ++
Sbjct: 237 VITHAHLDHVGALPVLFKY-GYKGPVYMTEPTLHLSKLLFEDYIKV-AQREGKNELYSMR 294
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGD 177
+ + + + + ++++ Y AGH+LG+AM + +G+ +VYTGD
Sbjct: 295 DVNSLLLNTYTLSYGEVTDIAPEIRLTFYRAGHILGSAMVHLHIGEGLINIVYTGD 350
>gi|448630398|ref|ZP_21673053.1| mRNA 3'-end processing factor-like protein [Haloarcula vallismortis
ATCC 29715]
gi|445756321|gb|EMA07696.1| mRNA 3'-end processing factor-like protein [Haloarcula vallismortis
ATCC 29715]
Length = 638
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 62/197 (31%), Positives = 100/197 (50%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA +EVG+S +++ RI+ DCG N + Y D + N ID +V+TH
Sbjct: 187 LGACREVGRSAFILSTPDTRILIDCGNKPGANGEQPYLDIPEAFGAG--TNGIDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P E GY+GPIY T PTR L ++ DY D G + S+ + E
Sbjct: 245 AHLDHSALVPLLFEY-GYDGPIYCTEPTRDLMGLLTLDYLDTAADD-GRTPPYDSEMVRE 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+++ + VGD + ++GD + R
Sbjct: 303 AIKHTIPLEYGDVTDIAPDIKLTLHNAGHILGSSVCHFHVGDGLYNVAFSGDIHYDDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 363 FDGAVNDFPRVETLVLE 379
>gi|392338884|ref|XP_003753662.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-like [Rattus norvegicus]
gi|392345811|ref|XP_003749372.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-like [Rattus norvegicus]
Length = 1015
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 107/201 (53%), Gaps = 15/201 (7%)
Query: 8 LGAGQEVGKS-CVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNN--AIDCIV 64
LGAG S C+++ G++IM DCG++ P D NN ID ++
Sbjct: 17 LGAGGPTRTSQCIILEFKGRKIMLDCGIYPVLEGMDALP-------YIDPNNLAEIDLLL 69
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
I+HFHLDH AL +F + + G ++MT+ T+A+ +L DY KV ++ +D
Sbjct: 70 ISHFHLDHCEALXWFLQKTSFKGWMFMTHATKAIYRWLLSDYVKVSNISADDMLHTETD- 128
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
+ E M KV ++ + V+ + ++ Y+A HVLGA MF ++ ++YTGD++ R
Sbjct: 129 LEESMNKVKTINFHE-VKAIEVIKFWCYHASHVLGAVMFVIEIAGVKILYTGDFSRQEVR 187
Query: 185 HLGAARIDR---LQLDLLITE 202
HL AA I ++ D+LI E
Sbjct: 188 HLMAAEIPXYLYIKSDILIVE 208
>gi|408382616|ref|ZP_11180159.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium formicicum DSM 3637]
gi|407814692|gb|EKF85316.1| KH-domain/beta-lactamase-domain-containing protein
[Methanobacterium formicicum DSM 3637]
Length = 634
Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats.
Identities = 59/185 (31%), Positives = 98/185 (52%), Gaps = 8/185 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQ-YPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG+S + + + +I+ DCG+++A +D + YP + D +D ++I+
Sbjct: 184 LGGFREVGRSSLFMQTSNSKILMDCGVNVAGSDDKSSYPYLNVPEFVLD---DLDAVIIS 240
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH G LP+ GY GP+Y T PTR L ++ D+ + R F H+
Sbjct: 241 HAHLDHSGFLPYLFHY-GYEGPVYCTTPTRDLMTLLQLDHIDI-AHREDSPLPFNVKHVK 298
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
+ +K I +D + + D+++ + AGH+LG+A+ + +GD VYTGD+ R
Sbjct: 299 KSIKHTITLDYGEVTDIAPDIRLTLHNAGHILGSAITHMHIGDGQHNFVYTGDFKYERSR 358
Query: 185 HLGAA 189
L A
Sbjct: 359 LLEPA 363
>gi|73667742|ref|YP_303757.1| cleavage and polyadenylation specificity factor [Methanosarcina
barkeri str. Fusaro]
gi|72394904|gb|AAZ69177.1| cleavage and polyadenylation specificity factor [Methanosarcina
barkeri str. Fusaro]
Length = 637
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 109/197 (55%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC +++ RI+ DCG+++ +D P + + + N ID +++TH
Sbjct: 186 LGGCKEVGRSCFLLSTPESRILIDCGVNVG-SDENMTP-YLYVPEVFPLNQ-IDAVIVTH 242
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P + GY GP+Y T PTR L ++ DY V + G+ + S +A+
Sbjct: 243 AHLDHQGLVPLLFKF-GYEGPVYCTPPTRDLMVLLQLDYIDVAA-KEGKKIPYESGMVAK 300
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
+K I +D ++ + D+++ + AGH+LG+A+ + +GD +V+TGDY R
Sbjct: 301 TLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYEKTRL 360
Query: 186 LGAARIDRLQLDLLITE 202
A +++ +++E
Sbjct: 361 FDPAVNKFPRVETVVSE 377
>gi|374724464|gb|EHR76544.1| putative metal-dependent RNase [uncultured marine group II
euryarchaeote]
Length = 634
Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG+ +EVG++C VT N RIM D G+++A +D P F+ + +D +V+TH
Sbjct: 183 LGSYREVGRACHFVTTNESRIMIDVGVNIA-SDTDPMPYFT--APEALPLEKLDAVVLTH 239
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G LP + GY GP+Y T PTR L ++ DY KV G+ + + I
Sbjct: 240 SHLDHAGMLPVLFKY-GYRGPVYCTPPTRDLMLLLQTDYLKV-GGAEGKRAPYDMEDIRT 297
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
CMK V+ VD +T + D+++ AGH+LG++ + +G+ +V++GD
Sbjct: 298 CMKHVVDVDWGETTDIAPDVKLTFSNAGHILGSSAVHLHIGEGKHNIVFSGDQKYEKSWL 357
Query: 186 LGAARIDRLQLDLLITE 202
AA +++ L+ E
Sbjct: 358 FDAANTRFPRVETLVIE 374
>gi|308198432|pdb|2XR1|A Chain A, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
gi|308198433|pdb|2XR1|B Chain B, Dimeric Archaeal Cleavage And Polyadenylation Specificity
Factor With N-Terminal Kh Domains (Kh-Cpsf) From
Methanosarcina Mazei
Length = 640
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 109/197 (55%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC +++ RI+ DCG+++ +D P + + + N ID +++TH
Sbjct: 189 LGGCKEVGRSCFLLSTPESRILIDCGVNVG-SDENMTP-YLYVPEVFPLNQ-IDAVIVTH 245
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P + GY GP+Y T PTR L ++ DY V + G+ + S +A+
Sbjct: 246 AHLDHQGLVPLLFKY-GYEGPVYCTPPTRDLMVLLQLDYIDVAA-KEGKKIPYESGMVAK 303
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
+K I +D ++ + D+++ + AGH+LG+A+ + +GD +V+TGDY R
Sbjct: 304 TLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYEKTRL 363
Query: 186 LGAARIDRLQLDLLITE 202
A +++ +I+E
Sbjct: 364 FDPAVNKFPRVETVISE 380
>gi|20092670|ref|NP_618745.1| cleavage and polyadenylation specificity factor [Methanosarcina
acetivorans C2A]
gi|19917954|gb|AAM07225.1| cleavage and polyadenylation specificity factor [Methanosarcina
acetivorans C2A]
Length = 637
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 109/197 (55%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC +++ RI+ DCG+++ +D P + + + N ID +++TH
Sbjct: 186 LGGCKEVGRSCFLLSTPESRILIDCGVNVG-SDENMTP-YLYVPEVFPLNQ-IDAVIVTH 242
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P + GY GP+Y T PTR L ++ DY V + G+ + S +A+
Sbjct: 243 AHLDHQGLVPLLFKY-GYEGPVYCTPPTRDLMVLLQLDYIDVAA-KEGKKIPYESGMVAK 300
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
+K I +D ++ + D+++ + AGH+LG+A+ + +GD +V+TGDY R
Sbjct: 301 TLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYEKTRL 360
Query: 186 LGAARIDRLQLDLLITE 202
A +++ +I+E
Sbjct: 361 FDPAVNKFPRVETVISE 377
>gi|253742053|gb|EES98907.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia intestinalis ATCC 50581]
Length = 757
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/215 (33%), Positives = 107/215 (49%), Gaps = 28/215 (13%)
Query: 8 LGAGQEVGKSCVVVTIN----GKRIMFDCGMHMAYNDHRQYPDFSRIS--KSCDFNNAID 61
LGAG EVG+SC +++ IM DCG+H A ++ R Y + D+ +
Sbjct: 34 LGAGNEVGRSCFILSYQRSGCSGSIMLDCGLHPALSETRDYVAIQALPFFDLEDYVANLS 93
Query: 62 CIVITHFHLDHIGALPFFTEICG------------YNGPIYMTYPTRALAPIMLEDYRKV 109
I+ITHFH DHI ALP+ Y P+YMT PT L+ +++
Sbjct: 94 LILITHFHNDHIAALPYLLRCLRDRAVKEGKPELHYIPPVYMTAPT-------LKIFKES 146
Query: 110 LVDRRGEVEQFTSDHIAECMKKV-IAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVG 168
+ D + + +T + + K + QT +V + A AGHV+GAAMF+ +
Sbjct: 147 VADVISQTKLYTHEDVEFMAKNTRLLTSFYQTERVS-GVSFTAMPAGHVIGAAMFHISID 205
Query: 169 DSAMVYTGDYNMTP-DRHLGAARIDRLQLDLLITE 202
+ +YTGD++ P DRHL A +++LDLLI E
Sbjct: 206 NFHALYTGDFSCEPEDRHLQPATFPQVRLDLLIIE 240
>gi|21226797|ref|NP_632719.1| cleavage and polyadenylation specificity factor 100 kD subunit
[Methanosarcina mazei Go1]
gi|452209278|ref|YP_007489392.1| cleavage and polyadenylation specificity factor [Methanosarcina
mazei Tuc01]
gi|20905093|gb|AAM30391.1| cleavage and polyadenylation specificity factor 100 kD subunit
[Methanosarcina mazei Go1]
gi|452099180|gb|AGF96120.1| cleavage and polyadenylation specificity factor [Methanosarcina
mazei Tuc01]
Length = 637
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 109/197 (55%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC +++ RI+ DCG+++ +D P + + + N ID +++TH
Sbjct: 186 LGGCKEVGRSCFLLSTPESRILIDCGVNVG-SDENMTP-YLYVPEVFPLNQ-IDAVIVTH 242
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P + GY GP+Y T PTR L ++ DY V + G+ + S +A+
Sbjct: 243 AHLDHQGLVPLLFKY-GYEGPVYCTPPTRDLMVLLQLDYIDVAA-KEGKKIPYESGMVAK 300
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
+K I +D ++ + D+++ + AGH+LG+A+ + +GD +V+TGDY R
Sbjct: 301 TLKHTIPLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDYKYEKTRL 360
Query: 186 LGAARIDRLQLDLLITE 202
A +++ +I+E
Sbjct: 361 FDPAVNKFPRVETVISE 377
>gi|242398880|ref|YP_002994304.1| Cleavage and polyadenylation specficity factor subunit like protein
[Thermococcus sibiricus MM 739]
gi|242265273|gb|ACS89955.1| Cleavage and polyadenylation specficity factor subunit like protein
[Thermococcus sibiricus MM 739]
Length = 648
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 66/205 (32%), Positives = 109/205 (53%), Gaps = 16/205 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMA-YND------HRQYPDFSRISKSCDFNNAI 60
LG +EVG+S +++ N ++ D G+++A ND H + P+F+ + K +
Sbjct: 191 LGGFREVGRSALLLQTNESFVLVDFGVNVAELNDPKKGLPHFEAPEFTYVLKE----RLL 246
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ- 119
D I++TH HLDH G LP+ ++GPIY T PTR L ++ +D+ + + + VE
Sbjct: 247 DAIIVTHAHLDHSGLLPYLFRYNLFDGPIYTTPPTRDLMILLQKDF--IEIQQSNGVEPL 304
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGD 177
+ I E +K IA+D + + DL++ + AGHVLG+A+ + VG+ + TGD
Sbjct: 305 YRMKDIKEVVKHTIALDYGEVRDISPDLRLTLHNAGHVLGSAIAHLHVGNGLHNIAVTGD 364
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
+ P R A +L+ LI E
Sbjct: 365 FKFAPTRLFEPANSKFPRLETLIME 389
>gi|124809291|ref|XP_001348538.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
gi|23497434|gb|AAN36977.1| cleavage and polyadenylation specificity factor protein, putative
[Plasmodium falciparum 3D7]
Length = 876
Score = 103 bits (256), Expect = 5e-20, Method: Composition-based stats.
Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 62/254 (24%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP--DFSRISKSCDFNNAI 60
I+ + LG EVG+SCV++ + +M DCG+H A+ P D ISK +
Sbjct: 4 INIVCLGGASEVGRSCVIIECDKTSVMLDCGIHPAFMGIGCLPIYDAYDISK-------V 56
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVL---------- 110
D +ITHFH+DH GALP+ + G I+MT T+++ ++ DY ++
Sbjct: 57 DLCLITHFHMDHSGALPYLINKTRFKGRIFMTEATKSICYLLWNDYARIEKYMNVVNKNK 116
Query: 111 ------------------------------VDRRGEVEQ------------FTSDHIAEC 128
+D G+V + + + I +
Sbjct: 117 LSKNKKGGEDDNGLNNGNMLLSNEYSSDENIDDNGDVYENNDNGDGNSNVLYDENDIDKT 176
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M + ++ Q + +++ AY AGHV+GA MF ++ + +YTGDY+ DRH+
Sbjct: 177 MDLIETLNFHQNFEF-PNVKFTAYRAGHVIGACMFLVEINNIRFLYTGDYSREIDRHIPI 235
Query: 189 ARIDRLQLDLLITE 202
A I + + +LI E
Sbjct: 236 AEIPNIDVHVLICE 249
>gi|330508618|ref|YP_004385046.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta concilii GP6]
gi|328929426|gb|AEB69228.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta concilii GP6]
Length = 635
Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC++++ RI+ DCG+++ +D + + + N ID +V+TH
Sbjct: 186 LGGCREVGRSCMLLSTPESRIIIDCGINVGSDDSAT--PYLYVPEVYPLNQ-IDAVVLTH 242
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P + GY GPIY T PTR L ++ DY ++ R G + S I E
Sbjct: 243 AHLDHAGLVPMLYKY-GYEGPIYCTPPTRDLFVLLQLDYIEI-AGREGNRLPYDSGMIRE 300
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
+K I ++ + D ++ + AGH+LG+++ + +GD + +TGDY R
Sbjct: 301 ALKHTITLNYGDVTDIAPDTKLTMHNAGHILGSSIAHFHIGDGLYNVAFTGDYKFERTRL 360
Query: 186 LGAARIDRLQLDLLITE 202
A + +L+ L+TE
Sbjct: 361 FDPAVCNFPRLETLVTE 377
>gi|257075969|ref|ZP_05570330.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Ferroplasma acidarmanus fer1]
Length = 637
Score = 103 bits (256), Expect = 6e-20, Method: Composition-based stats.
Identities = 57/174 (32%), Positives = 97/174 (55%), Gaps = 7/174 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN--NAIDCIVI 65
LG +EVG+S +++ N +++ DCGM + ND + + + + ++D +V+
Sbjct: 182 LGGHREVGRSATLISTNNSKVLVDCGM-ININDPEHPWEEAPYLYAPEIQPFTSLDAVVL 240
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH G LP + GY GP+Y T PTR LA ++ DY KV ++ + S H+
Sbjct: 241 THAHLDHSGLLPLLFKY-GYTGPVYSTAPTRDLAALLQNDYLKVSHSENHKL-SYESKHV 298
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGD 177
E +K I++ +T + D+++ Y AGH+LG+A + +G+ +V +GD
Sbjct: 299 REELKHTISLKYNETADITPDIRLTFYNAGHILGSAAVHLHIGEGLYNVVLSGD 352
>gi|147919476|ref|YP_686784.1| mRNA cleavage/polyadenylation specificity factor, 100 kD subunit
[Methanocella arvoryzae MRE50]
gi|110622180|emb|CAJ37458.1| mRNA cleavage/polyadenylation specificity factor,100 kD subunit
[Methanocella arvoryzae MRE50]
Length = 636
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/206 (31%), Positives = 112/206 (54%), Gaps = 15/206 (7%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDHRQY---PDFSRISKSCDFNN 58
I LG +EVG+S +++ RI+ DCG++ A ++ Y P+ S +S
Sbjct: 181 IRVTTLGGCKEVGRSSFLLSTPETRILIDCGVNTGAESNGTPYLYVPEVSPLS------- 233
Query: 59 AIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVE 118
+ID +VITH HLDH G +P + GY GPIY T PTR L+ ++ DY +V +R G+
Sbjct: 234 SIDAVVITHAHLDHCGIVPLLFK-YGYEGPIYATPPTRDLSALLQLDYIEV-ANREGKRP 291
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTG 176
+ S I E +K+ I ++ + D+++ Y +GH+LG+A+ + +G+ + +TG
Sbjct: 292 PYDSALIREALKRTITLNYGDVTDIAPDVRLTFYNSGHILGSAIAHFHIGEGLYNVAFTG 351
Query: 177 DYNMTPDRHLGAARIDRLQLDLLITE 202
D+ + AA + +++ +I E
Sbjct: 352 DFKYEKSKLFDAAVNNFPRVETVIME 377
>gi|401882746|gb|EJT46990.1| cleavage and polyadenylation specificity factor [Trichosporon
asahii var. asahii CBS 2479]
gi|406700483|gb|EKD03650.1| cleavage and polyadenylation specificity factor [Trichosporon
asahii var. asahii CBS 8904]
Length = 738
Score = 102 bits (255), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/220 (31%), Positives = 102/220 (46%), Gaps = 29/220 (13%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
++ +LGAGQEVG+SC V+ GK I+ D G+H AY P + S +D
Sbjct: 26 SLSVTMLGAGQEVGRSCCVIQHRGKTIVCDAGLHPAYPGLGGLPFIDELDWST-----VD 80
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
I+ITHFH+DH ALP+ E M + + R+ + D R T
Sbjct: 81 AILITHFHVDHAAALPYIMEKVR-----LMVLCWELTSDELPGRKRQGVHDARDACHLRT 135
Query: 122 SD-------------------HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM 162
D + + IAVD Q + + L+ Y+AGHVLGA+M
Sbjct: 136 DDDGHRPHQNAEAAGRLYNEADVQASWENTIAVDYHQDINISGGLRFTPYHAGHVLGASM 195
Query: 163 FYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
F ++ ++YTGDY+ DRHL A + ++ D++I E
Sbjct: 196 FLIEIAGLKVLYTGDYSREEDRHLVIAEVPPVKPDVMICE 235
>gi|435851175|ref|YP_007312761.1| KH-domain/beta-lactamase-domain protein [Methanomethylovorans
hollandica DSM 15978]
gi|433661805|gb|AGB49231.1| KH-domain/beta-lactamase-domain protein [Methanomethylovorans
hollandica DSM 15978]
Length = 636
Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 99/188 (52%), Gaps = 15/188 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQ----YPDFSRISKSCDFNNAIDCI 63
LG +EVG+SC +++ +M DCG+++ +H P+ S SK +D +
Sbjct: 186 LGGCKEVGRSCFLLSTPESCVMIDCGVNVGSEEHMTPYLYVPEVSPFSK-------LDAV 238
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
VITH HLDH G LP G+ GP+Y T PTR L ++ DY V + G ++S
Sbjct: 239 VITHAHLDHQGLLPLLYRY-GFEGPVYCTPPTRDLMALLQLDYIDV-ASKEGGRPPYSSA 296
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMT 181
+ E +K I +D ++ + D+++ + AGH+LG+A+ + +GD +V+TGD+
Sbjct: 297 DVREVLKHSIVLDYEEVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGDFKYE 356
Query: 182 PDRHLGAA 189
R A
Sbjct: 357 KTRLFDPA 364
>gi|448302487|ref|ZP_21492466.1| mRNA 3'-end processing factor-like protein [Natronorubrum tibetense
GA33]
gi|445581153|gb|ELY35515.1| mRNA 3'-end processing factor-like protein [Natronorubrum tibetense
GA33]
Length = 637
Score = 102 bits (255), Expect = 8e-20, Method: Composition-based stats.
Identities = 64/200 (32%), Positives = 106/200 (53%), Gaps = 14/200 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCG-MHMAYND--HRQYPDFSRISKSCDFNNAIDCIV 64
LG +EVG++ V++ RI+ DCG A D H Q P+ + I+ +D +V
Sbjct: 187 LGCCREVGRASFVLSTPETRILVDCGDKPGAEGDVPHLQVPEANPIAD-------LDAVV 239
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
+TH HLDH LP + GY+GP+YMT PTR L ++ DY V + G + S+
Sbjct: 240 LTHAHLDHSALLPLLFKY-GYDGPVYMTAPTRDLIGLLQLDYLDVAA-KEGRTPPYESEM 297
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTP 182
+ E +K I +D + D+++ + AGH+LG+A+ + +GD +V++GD + +
Sbjct: 298 VREELKHTITLDYGDVTDIAPDIKLTLHNAGHILGSAVAHFHIGDGLHNIVFSGDVHYSD 357
Query: 183 DRHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 358 TRLFNGAVNDFPRVETLVME 377
>gi|15897661|ref|NP_342266.1| mRNA 3'-end processing factor [Sulfolobus solfataricus P2]
gi|6015715|emb|CAB57542.1| mRNA 3'-end polyadenylation factor [Sulfolobus solfataricus P2]
gi|13813930|gb|AAK41056.1| mRNA 3'-end processing factor, putative [Sulfolobus solfataricus
P2]
Length = 639
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 61/201 (30%), Positives = 105/201 (52%), Gaps = 13/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYN--DHRQYP--DFSRISKSCDFNNAIDCI 63
LG EVG+S V+V +++ D G++ + N + +P D ++ +D +
Sbjct: 188 LGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPKLDIDQLKME-----ELDAV 242
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
VITH HLDH G +PF + GY GP+Y T PTR + +M D V ++ G+ +++
Sbjct: 243 VITHAHLDHCGMVPFLFKY-GYEGPVYTTVPTRDIMALMQLDSLDV-AEKEGKPIPYSAK 300
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMT 181
+ + + I +D + + D+++ Y AGH+LG+ M + +GD +VYTGD+
Sbjct: 301 EVRKELLHTITLDYGEVTDIAPDIRLTFYNAGHILGSGMAHLHIGDGKHNIVYTGDFKYA 360
Query: 182 PDRHLGAARIDRLQLDLLITE 202
+ L A + ++D LI E
Sbjct: 361 KTKLLDKANTEFPRVDTLIME 381
>gi|284174985|ref|ZP_06388954.1| mRNA 3'-end processing factor, putative [Sulfolobus solfataricus
98/2]
Length = 638
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 61/201 (30%), Positives = 105/201 (52%), Gaps = 13/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYN--DHRQYP--DFSRISKSCDFNNAIDCI 63
LG EVG+S V+V +++ D G++ + N + +P D ++ +D +
Sbjct: 187 LGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPKLDIDQLKME-----ELDAV 241
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
VITH HLDH G +PF + GY GP+Y T PTR + +M D V ++ G+ +++
Sbjct: 242 VITHAHLDHCGMVPFLFKY-GYEGPVYTTVPTRDIMALMQLDSLDV-AEKEGKPIPYSAK 299
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMT 181
+ + + I +D + + D+++ Y AGH+LG+ M + +GD +VYTGD+
Sbjct: 300 EVRKELLHTITLDYGEVTDIAPDIRLTFYNAGHILGSGMAHLHIGDGKHNIVYTGDFKYA 359
Query: 182 PDRHLGAARIDRLQLDLLITE 202
+ L A + ++D LI E
Sbjct: 360 KTKLLDKANTEFPRVDTLIME 380
>gi|384434275|ref|YP_005643633.1| KH-domain/beta-lactamase-domain-containing protein [Sulfolobus
solfataricus 98/2]
gi|261602429|gb|ACX92032.1| KH-domain/beta-lactamase-domain protein [Sulfolobus solfataricus
98/2]
Length = 635
Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats.
Identities = 61/201 (30%), Positives = 105/201 (52%), Gaps = 13/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYN--DHRQYP--DFSRISKSCDFNNAIDCI 63
LG EVG+S V+V +++ D G++ + N + +P D ++ +D +
Sbjct: 184 LGGFLEVGRSAVLVETPESKVLLDVGLNPSANMFGEKLFPKLDIDQLKME-----ELDAV 238
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
VITH HLDH G +PF + GY GP+Y T PTR + +M D V ++ G+ +++
Sbjct: 239 VITHAHLDHCGMVPFLFKY-GYEGPVYTTVPTRDIMALMQLDSLDV-AEKEGKPIPYSAK 296
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMT 181
+ + + I +D + + D+++ Y AGH+LG+ M + +GD +VYTGD+
Sbjct: 297 EVRKELLHTITLDYGEVTDIAPDIRLTFYNAGHILGSGMAHLHIGDGKHNIVYTGDFKYA 356
Query: 182 PDRHLGAARIDRLQLDLLITE 202
+ L A + ++D LI E
Sbjct: 357 KTKLLDKANTEFPRVDTLIME 377
>gi|18977777|ref|NP_579134.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus DSM 3638]
gi|18893520|gb|AAL81529.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus DSM 3638]
Length = 651
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 63/204 (30%), Positives = 106/204 (51%), Gaps = 14/204 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMA-YND------HRQYPDFSRISKSCDFNNAI 60
LG +EVG+S ++V + ++ D G+++A ND H P+F + K +
Sbjct: 194 LGGFREVGRSALLVQTDESFVLVDFGINVAALNDPYKAFPHFDAPEFQYVLKE----GLL 249
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D IVITH HLDH G LP+ ++GPIY T PTR L ++ +D+ ++ G+ +
Sbjct: 250 DAIVITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFVEIQ-QSNGQEPLY 308
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDY 178
I E +K I +D + + D+++ + AGH+LG+A+ + +G+ + TGD+
Sbjct: 309 KPKDIKEVIKHTITLDYGEVRDISPDVRLTLHNAGHILGSAIVHLHIGNGLHNIAVTGDF 368
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
P R L A +L+ L+ E
Sbjct: 369 KFIPTRLLEPASYRFPRLETLVME 392
>gi|397651897|ref|YP_006492478.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus COM1]
gi|393189488|gb|AFN04186.1| cleavage and polyadenylation specifity factor protein [Pyrococcus
furiosus COM1]
Length = 648
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 63/204 (30%), Positives = 106/204 (51%), Gaps = 14/204 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMA-YND------HRQYPDFSRISKSCDFNNAI 60
LG +EVG+S ++V + ++ D G+++A ND H P+F + K +
Sbjct: 191 LGGFREVGRSALLVQTDESFVLVDFGINVAALNDPYKAFPHFDAPEFQYVLKE----GLL 246
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D IVITH HLDH G LP+ ++GPIY T PTR L ++ +D+ ++ G+ +
Sbjct: 247 DAIVITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFVEIQ-QSNGQEPLY 305
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDY 178
I E +K I +D + + D+++ + AGH+LG+A+ + +G+ + TGD+
Sbjct: 306 KPKDIKEVIKHTITLDYGEVRDISPDVRLTLHNAGHILGSAIVHLHIGNGLHNIAVTGDF 365
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
P R L A +L+ L+ E
Sbjct: 366 KFIPTRLLEPASYRFPRLETLVME 389
>gi|395828536|ref|XP_003787428.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3 [Otolemur garnettii]
Length = 634
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 98/200 (49%), Gaps = 18/200 (9%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISQ 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIM-----LEDYRKVLVDRRGEVEQFTS 122
FHLD F + IY ++ + L + + D +T
Sbjct: 72 FHLDSHNLYSIFLRKSSW---IYHPQTSKTXKNLNSFCWHLSKFSNISADDM----LYTE 124
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ E M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++
Sbjct: 125 TDLEESMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQE 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL AA I ++ D+LI E
Sbjct: 184 DRHLMAAEIPNIKPDILIIE 203
>gi|432328821|ref|YP_007246965.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Aciduliprofundum sp. MAR08-339]
gi|432135530|gb|AGB04799.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Aciduliprofundum sp. MAR08-339]
Length = 647
Score = 102 bits (253), Expect = 1e-19, Method: Composition-based stats.
Identities = 60/181 (33%), Positives = 96/181 (53%), Gaps = 13/181 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHR------QYPDFSRISKSCDFNNA-- 59
LG +EVG+S ++ R++ DCG+ +A + Y + D N
Sbjct: 185 LGGYREVGRSATLLMTRTSRVLVDCGLDVAAVNQEGPWSGAPYLYVPEVWDQSDPENPFK 244
Query: 60 -IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVE 118
ID +V+TH HLDH+G +P + Y+G +YMT PTR LA ++L DY KV G+
Sbjct: 245 HIDAVVVTHAHLDHVGLVPLLFKY-NYDGAVYMTAPTRDLAAMLLIDYVKV-AQSEGKKV 302
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTG 176
+ S HI E +K I + +T + D+++ + AGH+LG+A+ + +G+ +V TG
Sbjct: 303 PYESKHIKEMIKHTITLKYGETTDIAPDIRLTFHNAGHILGSAISHFHIGNGLYNVVITG 362
Query: 177 D 177
D
Sbjct: 363 D 363
>gi|126458658|ref|YP_001054936.1| beta-lactamase domain-containing protein [Pyrobaculum calidifontis
JCM 11548]
gi|126248379|gb|ABO07470.1| beta-lactamase domain protein [Pyrobaculum calidifontis JCM 11548]
Length = 634
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 10/202 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LG EVG+S V+V+ ++ DCG+ +D +D
Sbjct: 174 ITVTFLGGAMEVGRSAVLVSTGESNVLLDCGLKPVQDDEDFPLLDMLDLD------RLDA 227
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+V+TH H+DH+G LP + GY GP+Y T PT+ A I+L DY + L +R G + F+
Sbjct: 228 VVLTHAHMDHVGCLPLLYKY-GYRGPVYATDPTKYQAYILLMDYVE-LKEREGGLPSFSR 285
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNM 180
+ + I +D ++ + D+++ Y AGH +G+AM + +G+ ++YTGD+
Sbjct: 286 ADVEAVIYHTITLDYEEVTDITPDIKLTFYDAGHEIGSAMAHLHIGNGRYNILYTGDFKY 345
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
R L A ++++LI E
Sbjct: 346 GKTRLLNRAVNKFKRVEMLIME 367
>gi|14520957|ref|NP_126432.1| mRNA 3'-end processing factor, [Pyrococcus abyssi GE5]
gi|5458174|emb|CAB49663.1| Cleavage and polyadenylation specficity factor [Pyrococcus abyssi
GE5]
Length = 651
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 14/204 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMA-YND------HRQYPDFSRISKSCDFNNAI 60
LG +EVG+S ++V + ++ D G+++A ND H P+F + K +
Sbjct: 194 LGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKE----GLL 249
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D I+ITH HLDH G LP+ ++GPIY T PTR L ++ +D+ ++ G+ +
Sbjct: 250 DAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ-QSNGQDPLY 308
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDY 178
I E +K I +D + + D+++ + AGH+LG+A+ + +G+ + TGD+
Sbjct: 309 RPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDF 368
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
P R L A +L+ L+ E
Sbjct: 369 KFIPTRLLEPANAKFPRLETLVME 392
>gi|380741511|tpe|CCE70145.1| TPA: mRNA 3'-end processing factor, putative [Pyrococcus abyssi
GE5]
Length = 648
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 14/204 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMA-YND------HRQYPDFSRISKSCDFNNAI 60
LG +EVG+S ++V + ++ D G+++A ND H P+F + K +
Sbjct: 191 LGGFREVGRSALLVQTDESYVLVDFGVNVAALNDPYKAFPHFDAPEFQYVLKE----GLL 246
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D I+ITH HLDH G LP+ ++GPIY T PTR L ++ +D+ ++ G+ +
Sbjct: 247 DAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ-QSNGQDPLY 305
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDY 178
I E +K I +D + + D+++ + AGH+LG+A+ + +G+ + TGD+
Sbjct: 306 RPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDF 365
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
P R L A +L+ L+ E
Sbjct: 366 KFIPTRLLEPANAKFPRLETLVME 389
>gi|337284211|ref|YP_004623685.1| mRNA 3'-end processing factor [Pyrococcus yayanosii CH1]
gi|334900145|gb|AEH24413.1| mRNA 3'-end processing factor, putative [Pyrococcus yayanosii CH1]
Length = 648
Score = 101 bits (252), Expect = 2e-19, Method: Composition-based stats.
Identities = 62/204 (30%), Positives = 106/204 (51%), Gaps = 14/204 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMA-YND------HRQYPDFSRISKSCDFNNAI 60
LG +EVG+S ++V + ++ D G+++A ND H P+F + K +
Sbjct: 191 LGGFREVGRSALLVQTDESYVLVDFGVNVAAMNDPYKAFPHFDAPEFQYVLKE----GLL 246
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D I+ITH HLDH G LP+ ++GPIY T PTR L ++ +D+ ++ G+ +
Sbjct: 247 DAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ-QSNGQEPLY 305
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDY 178
I E +K I +D + + D+++ + AGH+LG+A+ + +G+ + TGD+
Sbjct: 306 RPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAVTGDF 365
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
P R L A +L+ L+ E
Sbjct: 366 KFIPTRLLEPANARFPRLETLVME 389
>gi|424811901|ref|ZP_18237141.1| putative metal-dependent Rnase [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756123|gb|EGQ39706.1| putative metal-dependent Rnase [Candidatus Nanosalinarum sp.
J07AB56]
Length = 619
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 106/199 (53%), Gaps = 9/199 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG ++VG+SCV+V ++ DCG+ + + +P + D A+D +V+
Sbjct: 174 LGGFRQVGRSCVLVQSETSNVLLDCGIDPSAEEGSRNNFPHLD--APELDIP-ALDAVVL 230
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
+H H+DH+G +P+ + GY+GP+Y T PTR L + DY + + + S HI
Sbjct: 231 SHAHMDHMGMIPYLYRM-GYDGPLYCTAPTRDLMIMQTLDYIDISHSEQASA-PYESKHI 288
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPD 183
+ +K+ I + + V D+++ +GH++G+++ + +GD ++YTGDYN
Sbjct: 289 KQAVKRTITPEYGKVTDVAPDIKLTLRNSGHIIGSSIVHMHIGDGLHNLLYTGDYNYDDS 348
Query: 184 RHLGAARIDRLQLDLLITE 202
L A D +++ +ITE
Sbjct: 349 HMLRPASTDFHRVETVITE 367
>gi|294495430|ref|YP_003541923.1| KH-domain/beta-lactamase-domain protein [Methanohalophilus mahii
DSM 5219]
gi|292666429|gb|ADE36278.1| KH-domain/beta-lactamase-domain protein [Methanohalophilus mahii
DSM 5219]
Length = 637
Score = 100 bits (250), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 109/201 (54%), Gaps = 15/201 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND----HRQYPDFSRISKSCDFNNAIDCI 63
LG +EVG+SC +++ +IM DCG+++ +D + P+ + N ID +
Sbjct: 186 LGGCREVGRSCFLLSTPESKIMIDCGVNVGSDDDMTPYLYIPEVQPL-------NQIDAV 238
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
VITH HLDH G +P + GY+GPIY T+PTR L ++ D+ V + G+ + S
Sbjct: 239 VITHAHLDHQGLVPLLYK-YGYDGPIYCTHPTRDLMVLLELDFIDVAA-KDGKRIPYESA 296
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMT 181
+ +K I ++ ++ + D+++ + AGH++G+A+ + +GD +V TGD+
Sbjct: 297 DVRNALKHSIVLEYEEVTDIAPDIKLTFHNAGHIIGSAVSHFHIGDGLHNVVITGDFKYG 356
Query: 182 PDRHLGAARIDRLQLDLLITE 202
P R A +++ +ITE
Sbjct: 357 PTRLFNPAVNKFPRVETVITE 377
>gi|344211192|ref|YP_004795512.1| mRNA 3'-end processing factor-like protein [Haloarcula hispanica
ATCC 33960]
gi|343782547|gb|AEM56524.1| mRNA 3'-end processing factor-like protein [Haloarcula hispanica
ATCC 33960]
Length = 638
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 61/197 (30%), Positives = 99/197 (50%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ RI+ DCG N + Y D + N ID +V+TH
Sbjct: 187 LGCCREVGRAAFILSTPDTRILIDCGNKPGSNGEQPYLDIPEAFGAG--TNGIDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P E GY+GPIY T PTR L ++ DY D G + S+ + E
Sbjct: 245 AHLDHSALVPLLFEY-GYDGPIYCTEPTRDLMGLLTLDYLDTAADD-GRTPPYDSEMVRE 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGHVLG+++ + VGD + ++GD + R
Sbjct: 303 AIKHTIPLEYGDVTDIAPDIKLTLHNAGHVLGSSVCHFHVGDGLYNVAFSGDIHYDDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 363 FDGAVNDFPRVETLVLE 379
>gi|448667443|ref|ZP_21685943.1| mRNA 3'-end processing factor-like protein [Haloarcula amylolytica
JCM 13557]
gi|445770011|gb|EMA21079.1| mRNA 3'-end processing factor-like protein [Haloarcula amylolytica
JCM 13557]
Length = 638
Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats.
Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ RI+ DCG N + Y D + N ID +V+TH
Sbjct: 187 LGCCREVGRAAFILSTPDTRILIDCGNKPGANGEKPYLDIPEAFGAG--TNGIDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P E GY+GPIY T PTR L ++ DY D G + S+ + E
Sbjct: 245 AHLDHSALVPLLFEY-GYDGPIYCTEPTRDLMGLLTLDYLDTAADD-GRTPPYDSEMVRE 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+++ + VGD + ++GD + R
Sbjct: 303 AIKHTIPLEYGDVTDIAPDIKLTLHNAGHILGSSVCHFHVGDGLYNVAFSGDIHYDDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 363 FDGAVNDFPRVETLVLE 379
>gi|14591202|ref|NP_143278.1| mRNA 3'-end processing factor [Pyrococcus horikoshii OT3]
gi|294979445|pdb|3AF5|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii
gi|294979446|pdb|3AF6|A Chain A, The Crystal Structure Of An Archaeal Cpsf Subunit, Ph1404
From Pyrococcus Horikoshii Complexed With Rna-Analog
gi|3257827|dbj|BAA30510.1| 651aa long hypothetical protein [Pyrococcus horikoshii OT3]
Length = 651
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 14/204 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAY-ND------HRQYPDFSRISKSCDFNNAI 60
LG +EVG+S ++V + ++ D G+++A ND H P+F + + +
Sbjct: 194 LGGFREVGRSALLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLRE----GLL 249
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D I+ITH HLDH G LP+ ++GPIY T PTR L ++ +D+ ++ G+ +
Sbjct: 250 DAIIITHAHLDHCGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ-QSNGQDPLY 308
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDY 178
I E +K I +D + + D+++ + AGH+LG+A+ + +G+ + TGD+
Sbjct: 309 RPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDF 368
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
P R L A +L+ L+ E
Sbjct: 369 KFIPTRLLEPANAKFPRLETLVME 392
>gi|70606450|ref|YP_255320.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius DSM 639]
gi|449066664|ref|YP_007433746.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius N8]
gi|449068938|ref|YP_007436019.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius Ron12/I]
gi|68567098|gb|AAY80027.1| hypothetical metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius DSM 639]
gi|449035172|gb|AGE70598.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius N8]
gi|449037446|gb|AGE72871.1| metallo-beta-lactamase superfamily protein [Sulfolobus
acidocaldarius Ron12/I]
Length = 631
Score = 100 bits (249), Expect = 4e-19, Method: Composition-based stats.
Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+S V+V +I+ D G++ + + + F RI ID +VITH
Sbjct: 181 LGGFNEVGRSAVLVETPESKILLDVGLNPSVSYGEKL--FPRIDIDQVKLEDIDAVVITH 238
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P + GY GP+YMT PTR + + D V ++ G +T+ +
Sbjct: 239 AHLDHCGMVPLLFKY-GYEGPVYMTPPTRDIMALAQLDALDV-AEKEGRPIPYTAKEVRR 296
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+ I +D + + D+++ Y AGH+LG+AM + +G+ +VYTGD+ +
Sbjct: 297 ELLHTITLDYGEVTDIAPDVKLTFYNAGHILGSAMAHLHIGEGLHNVVYTGDFKYARTKL 356
Query: 186 LGAARIDRLQLDLLITE 202
L A + +++D +I E
Sbjct: 357 LDKANDEFIRVDTMIME 373
>gi|383320534|ref|YP_005381375.1| metal-dependent RNAase-like protein [Methanocella conradii HZ254]
gi|379321904|gb|AFD00857.1| metal-dependent RNAase-like protein [Methanocella conradii HZ254]
Length = 637
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 104/193 (53%), Gaps = 15/193 (7%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDHRQY---PDFSRISKSCDFNN 58
I LG +EVG+S +++ RI+ DCG++ A ++ Y P+ S +S
Sbjct: 181 IRITTLGGCKEVGRSSFLLSTPETRILIDCGVNTGAESNGTPYLYVPEVSPLS------- 233
Query: 59 AIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVE 118
+ID +V+TH HLDH G +P + GY+GP+YMT PTR L ++ DY +V +R G+
Sbjct: 234 SIDAVVLTHAHLDHSGMIPLLFK-YGYDGPVYMTPPTRDLMALLQLDYIEV-ANREGKRP 291
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTG 176
+ S I E +K I ++ + D+++ Y +GH+LG+A+ + +G+ + ++G
Sbjct: 292 PYDSAMIRETLKHTITLNYGDVTDIAPDIRLTFYNSGHILGSAIAHFHIGEGLYNVAFSG 351
Query: 177 DYNMTPDRHLGAA 189
D+ R A
Sbjct: 352 DFKYEKTRLFDPA 364
>gi|315231930|ref|YP_004072366.1| polyadenylation specificity factor-like protein [Thermococcus
barophilus MP]
gi|315184958|gb|ADT85143.1| polyadenylation specificity factor-like protein [Thermococcus
barophilus MP]
Length = 648
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 62/200 (31%), Positives = 104/200 (52%), Gaps = 6/200 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMA-YNDHRQ-YPDFSRISKSCDFNNAI-DCIV 64
LG +EVG+S ++V N ++ D G+++A ND ++ +P F N + D I+
Sbjct: 191 LGGFREVGRSALLVQTNESFVLVDFGINVAALNDPKKAFPHFDAPEFRYVLNEGLLDAII 250
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
ITH HLDH G LP+ ++GPIY T PTR L ++ +D+ ++ G +
Sbjct: 251 ITHAHLDHSGLLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ-QSNGAEPLYKPKD 309
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTP 182
I E +K I +D + + D+++ + AGH+LG+A+ + +G+ + TGD+ P
Sbjct: 310 IKEVVKHTITLDYGEVRDISPDMRLTLHNAGHILGSAIVHLHIGNGLHNVAVTGDFKFIP 369
Query: 183 DRHLGAARIDRLQLDLLITE 202
R A +L+ LI E
Sbjct: 370 TRLFEPANARFPRLETLIME 389
>gi|395645476|ref|ZP_10433336.1| KH-domain/beta-lactamase-domain protein [Methanofollis liminatans
DSM 4140]
gi|395442216|gb|EJG06973.1| KH-domain/beta-lactamase-domain protein [Methanofollis liminatans
DSM 4140]
Length = 629
Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 14/205 (6%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQY---PDFSRISKSCDFNNA 59
+ LG +EVG++ ++T R++ DCG Y P+ S +S +
Sbjct: 179 VRVTTLGCCREVGRAAFLLTTPESRVLIDCGEKPGSTTSTPYLYVPEISPLS-------S 231
Query: 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
+D +V+TH HLDH +P + GY+GP+Y T PTR LA ++ DY V+ G +
Sbjct: 232 LDAVVLTHAHLDHCALVPLLFK-YGYDGPVYSTPPTRDLAAMLQLDYLDVVKKESGR-QP 289
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGD 177
+TS+ + E +K I ++ + D+++ + AGH+LG+A+ + +GD + +TGD
Sbjct: 290 YTSNEVKEYIKHSITLNYGSVTDIAPDIKLTFHNAGHILGSAIAHFHLGDGLYNIAFTGD 349
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
+N R A +L+ L E
Sbjct: 350 FNYQKTRLFSPAVSTFPRLEALFME 374
>gi|389852761|ref|YP_006354995.1| mRNA 3'-end processing factor [Pyrococcus sp. ST04]
gi|388250067|gb|AFK22920.1| putative mRNA 3'-end processing factor [Pyrococcus sp. ST04]
Length = 651
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 14/204 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMA-YND------HRQYPDFSRISKSCDFNNAI 60
LG +EVG+S ++V + ++ D G+++A ND H P+F + K +
Sbjct: 194 LGGFREVGRSALLVQTDESFVLVDFGVNVAAMNDPYKAFPHFDAPEFQYVLKE----GLL 249
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D I+ITH HLDH G LP+ ++GPIY T PTR L ++ +D+ ++ G+ +
Sbjct: 250 DAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ-QSNGQDPLY 308
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDY 178
I E +K I +D + + D+++ + AGH+LG+A+ + +G+ + TGD+
Sbjct: 309 RPKDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDF 368
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
P + L A +L+ L+ E
Sbjct: 369 KFIPTKLLEPANAKFPRLETLVME 392
>gi|124028414|ref|YP_001013734.1| exonuclease [Hyperthermus butylicus DSM 5456]
gi|123979108|gb|ABM81389.1| predicted exonuclease [Hyperthermus butylicus DSM 5456]
Length = 643
Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats.
Identities = 60/199 (30%), Positives = 108/199 (54%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP--DFSRISKSCDFNNAIDCIVI 65
LG EVG+S +++ + +I+ D G++ + + YP D +++ +D +V+
Sbjct: 184 LGGFMEVGRSAILIETSESKILLDVGINPSGIGYNLYPRLDIDQLNLE-----ELDAVVV 238
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDHIG +P+ + GY GP+Y T PTR L ++L D ++ R G+ +T +
Sbjct: 239 THAHLDHIGLVPYLFKY-GYRGPVYATKPTRDLMVLLLLDLLDIM-QRSGQKPPYTQQEV 296
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
+ + I +D + + D+++ Y AGH+LG+A+ + +G+ +VYTGD+
Sbjct: 297 KKMILHTIPLDYGEVTDIAPDMKLTFYNAGHILGSAIAHIHIGEGLHNIVYTGDFKFGRT 356
Query: 184 RHLGAARIDRLQLDLLITE 202
R L A + +++ LI E
Sbjct: 357 RLLDKAHTEFPRVETLIME 375
>gi|332159620|ref|YP_004424899.1| mRNA 3'-end processing factor [Pyrococcus sp. NA2]
gi|331035083|gb|AEC52895.1| mRNA 3'-end processing factor, putative [Pyrococcus sp. NA2]
Length = 651
Score = 100 bits (248), Expect = 5e-19, Method: Composition-based stats.
Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 14/204 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMA-YND------HRQYPDFSRISKSCDFNNAI 60
LG +EVG+S ++V + ++ D G+++A ND H P+F + + +
Sbjct: 194 LGGFREVGRSALLVQTDESFVLVDFGINVAALNDPYKAFPHFDAPEFQYVLRE----GLL 249
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D I+ITH HLDH G LP+ ++GPIY T PTR L ++ +D+ ++ G+ +
Sbjct: 250 DAIIITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQ-QSNGQDPLY 308
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDY 178
I E +K I +D + + D+++ + AGH+LG+A+ + +G+ + TGD+
Sbjct: 309 RPRDIKEVIKHTITLDYGEVRDISPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDF 368
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
P R L A +L+ L+ E
Sbjct: 369 KFIPTRLLEPANARFPRLETLVME 392
>gi|300176709|emb|CBK24374.2| unnamed protein product [Blastocystis hominis]
Length = 711
Score = 99.8 bits (247), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/180 (32%), Positives = 97/180 (53%), Gaps = 7/180 (3%)
Query: 24 NGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEIC 83
GK I+FDCG+ P I+ ++ +D ++I+HFHLDH GALP
Sbjct: 4 KGKVILFDCGVLPDGVGKGTLPYLDAIN-----DDYVDLVLISHFHLDHCGALPVLPRET 58
Query: 84 GYNGP-IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQ 142
G I+MT PT+ + +L DY + E ++ + +C+K + ++ + +
Sbjct: 59 GQRRTRIFMTPPTKEIMESILRDYLAITATEDEEDSIYSVSQLEKCIKMMETINFHED-R 117
Query: 143 VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
++++ + AGHVLGAAMF ++ ++YTGD++ DRHL AA I L+L+++I E
Sbjct: 118 WHNGIKVKCFQAGHVLGAAMFCVEIDRIRVLYTGDFSREEDRHLPAAEIPPLRLNVVICE 177
>gi|288561234|ref|YP_003424720.1| RNA-metabolising metallo-beta-lactamase [Methanobrevibacter
ruminantium M1]
gi|288543944|gb|ADC47828.1| RNA-metabolising metallo-beta-lactamase [Methanobrevibacter
ruminantium M1]
Length = 636
Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 103/198 (52%), Gaps = 20/198 (10%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQ------YPDFSRISKSCDFNNAID 61
+G +EVG+SC+++ R++ DCG+++A D + P+FS +D
Sbjct: 185 MGGFKEVGRSCMLLQTPNSRVLLDCGVNVAGQDDKTSFPMLGVPEFSI--------QDLD 236
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
+V++H HLDH G +P+ GY GP+Y T TR L ++ DY + R F
Sbjct: 237 AVVLSHAHLDHCGFIPYLYHY-GYEGPVYCTSATRDLMTLLQMDYIDI-AHRDNNPLPFN 294
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYN 179
+ H+ + +K I +D + D+++ + AGH++G+AM + +GD A ++YTGD+
Sbjct: 295 AKHVQKEVKHTITLDYGVVTDISPDIKLTLHNAGHIIGSAMCHFHIGDGAHNLLYTGDFK 354
Query: 180 MTPDRHLGAA--RIDRLQ 195
R L A R R++
Sbjct: 355 YEKSRLLEPATTRFPRVE 372
>gi|448678621|ref|ZP_21689628.1| mRNA 3'-end processing factor-like protein [Haloarcula
argentinensis DSM 12282]
gi|445772608|gb|EMA23653.1| mRNA 3'-end processing factor-like protein [Haloarcula
argentinensis DSM 12282]
Length = 638
Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 59/197 (29%), Positives = 100/197 (50%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG+ +EVG++ +++ RI+ DCG N + Y D + N ID +V+TH
Sbjct: 187 LGSCREVGRAAFILSTPDTRILIDCGNKPGANGEKPYLDIPEAFGAG--TNGIDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P E GY+GPIY T PTR L ++ D+ D G + S+ + E
Sbjct: 245 AHLDHSALVPLLFEY-GYDGPIYCTEPTRDLMGLLTLDHLDTAADD-GRTPPYDSEMVRE 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+++ + VGD + ++GD + R
Sbjct: 303 AIKHTIPLEYGDVTDIAPDIKLTLHNAGHILGSSVCHFHVGDGLYNVAFSGDIHYDDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 363 FDGAVNDFPRVETLVLE 379
>gi|307595786|ref|YP_003902103.1| KH-domain/beta-lactamase-domain-containing protein [Vulcanisaeta
distributa DSM 14429]
gi|307550987|gb|ADN51052.1| KH-domain/beta-lactamase-domain protein [Vulcanisaeta distributa
DSM 14429]
Length = 643
Score = 99.8 bits (247), Expect = 6e-19, Method: Composition-based stats.
Identities = 60/198 (30%), Positives = 103/198 (52%), Gaps = 11/198 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA EVG+S ++V I+ DCG+ + + D + + D + +D +VITH
Sbjct: 190 LGAQMEVGRSAILVRTKESSILLDCGVKPSSSG-----DEAPLLDEVDLDT-LDAVVITH 243
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
H+DHIG +P+ + GY GP+YMT PT+ L ++L DY + + G V ++ +A+
Sbjct: 244 AHMDHIGYVPYLFKY-GYKGPVYMTEPTKYLMEVLLTDYIE-QAESEGRVPPYSRQDLAQ 301
Query: 128 CMKKVIAVDL-KQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
+ I ++ + D ++ + GH +G+A+ + +G+ ++YTGD P R
Sbjct: 302 ALYHTITLNYADHPTDISPDTKLMLFDGGHEVGSAVVHLHIGNGLYNIIYTGDMKYGPTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
L A + +LLI E
Sbjct: 362 LLNPAHNKFKRAELLIME 379
>gi|434385192|ref|YP_007095803.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chamaesiphon minutus PCC 6605]
gi|428016182|gb|AFY92276.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Chamaesiphon minutus PCC 6605]
Length = 885
Score = 99.4 bits (246), Expect = 7e-19, Method: Composition-based stats.
Identities = 73/205 (35%), Positives = 101/205 (49%), Gaps = 24/205 (11%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA + +G SC V I I+ D G +D P F + + + I+ITH
Sbjct: 293 LGAARGIGASCFRVQIGPYEIVMDAGTRPKGSD--PLPAFELLDRP-------NLILITH 343
Query: 68 FHLDHIGALPFF----TEICGYNGPIYMTYPTRALAPIMLEDYRKV-LVDRRGEVEQFTS 122
HLDHIGALP F E+ P+ T+ TR +A +ML D KV +R E F
Sbjct: 344 AHLDHIGALPIFHRDFPEV-----PMICTHGTREIAHVMLTDGLKVQAAQQRQGNEDFGQ 398
Query: 123 DHIAECMKKVIAVDLKQTVQVD----KDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDY 178
A + + + Q V VD L +R +AGH++GAA Y K G+ +++YTGDY
Sbjct: 399 VFTANDLDRTLFTLQTQPVGVDFSPLPGLTVRFIHAGHIVGAACIYMKYGNRSILYTGDY 458
Query: 179 NMTPDRHLGAARI-DRLQLDLLITE 202
N T R ++ D Q D+LITE
Sbjct: 459 NTTSSRTAEGLKLADLPQADILITE 483
>gi|261403765|ref|YP_003247989.1| beta-lactamase [Methanocaldococcus vulcanius M7]
gi|261370758|gb|ACX73507.1| beta-lactamase domain protein [Methanocaldococcus vulcanius M7]
Length = 421
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G Q++G SCV V +I+ DCG+ PD I K D +ID ++I+H
Sbjct: 8 GGCQQIGMSCVEVESQKGKILLDCGLS---------PDTGEIPKVDD--KSIDAVIISHA 56
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GALPF+ IY T+PT A +M +R L ++ F + I
Sbjct: 57 HLDHCGALPFYK-----FKKIYCTHPT---ADLMFITWRDTLNLKKA----FGEEDIQNA 104
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M V ++ + ++ +++ + Y AGH+LG+A Y +V ++YTGD N R L +
Sbjct: 105 MSSVECLNYYEERSINDNIKFKFYNAGHILGSASIYLEVDGKKILYTGDINENVSRTLLS 164
Query: 189 ARIDRLQLDLLITE 202
A D ++D+LI E
Sbjct: 165 ADTDFDEIDVLIVE 178
>gi|440795786|gb|ELR16902.1| putative cleavage and polyadenylation specificity factor, putative
[Acanthamoeba castellanii str. Neff]
Length = 134
Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 4/107 (3%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + +GAG EVG+SC+++ GK IM DCG+H AY P F I D ID
Sbjct: 24 LEIMPIGAGSEVGRSCILLKFKGKHIMLDCGIHPAYTGLAALPYFDMI----DDPATIDL 79
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV 109
++++HFHLDH +LP+F E + G +YMT+PT+A+ ++L D+ KV
Sbjct: 80 LLVSHFHLDHCASLPYFMEKSTFKGRVYMTHPTKAIYKMLLTDFVKV 126
>gi|315426611|dbj|BAJ48239.1| beta-lactamase domain protein [Candidatus Caldiarchaeum
subterraneum]
Length = 635
Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 8/175 (4%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
VLGAG++VG+SC+++ + +M DCG+ A + YP F I + +D +V+
Sbjct: 183 VLGAGRQVGRSCILIQTSESTVMLDCGLSAGATSSLSFYPRFDAIP---NLVEELDAVVL 239
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
+H HLDH+G +P+ + GY GP+Y PT L + + DY V + G + I
Sbjct: 240 SHAHLDHVGLVPYLFKY-GYRGPVYAVEPTLPLMALEVTDYVSV-AGKEGTFAPYGESDI 297
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDY 178
++ + + D+++ Y AGH+LG++ + +G+ +VYTGD+
Sbjct: 298 RLALQHSFPLKYGVVTNITPDIRLIFYNAGHILGSSAVHLHIGEGLHNIVYTGDF 352
>gi|315426553|dbj|BAJ48183.1| beta-lactamase domain protein [Candidatus Caldiarchaeum
subterraneum]
gi|343485301|dbj|BAJ50955.1| beta-lactamase domain protein [Candidatus Caldiarchaeum
subterraneum]
Length = 635
Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 8/175 (4%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
VLGAG++VG+SC+++ + +M DCG+ A + YP F I + +D +V+
Sbjct: 183 VLGAGRQVGRSCILIQTSESTVMLDCGLSAGATSSLSFYPRFDAIP---NLVEELDAVVL 239
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
+H HLDH+G +P+ + GY GP+Y PT L + + DY V + G + I
Sbjct: 240 SHAHLDHVGLVPYLFKY-GYRGPVYAVEPTLPLMALEVTDYVSV-AGKEGTFAPYGESDI 297
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDY 178
++ + + D+++ Y AGH+LG++ + +G+ +VYTGD+
Sbjct: 298 RLALQHSFPLKYGVVTNITPDIRLIFYNAGHILGSSAVHLHIGEGLHNIVYTGDF 352
>gi|315425373|dbj|BAJ47039.1| mRNA 3'-end processing factor [Candidatus Caldiarchaeum
subterraneum]
Length = 638
Score = 99.0 bits (245), Expect = 9e-19, Method: Composition-based stats.
Identities = 53/175 (30%), Positives = 92/175 (52%), Gaps = 8/175 (4%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
VLGAG++VG+SC+++ + +M DCG+ A + YP F I + +D +V+
Sbjct: 186 VLGAGRQVGRSCILIQTSESTVMLDCGLSAGATSSLSFYPRFDAIP---NLVEELDAVVL 242
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
+H HLDH+G +P+ + GY GP+Y PT L + + DY V + G + I
Sbjct: 243 SHAHLDHVGLVPYLFKY-GYRGPVYAVEPTLPLMALEVTDYVSV-AGKEGTFAPYGESDI 300
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDY 178
++ + + D+++ Y AGH+LG++ + +G+ +VYTGD+
Sbjct: 301 RLALQHSFPLKYGVVTNITPDIRLIFYNAGHILGSSAVHLHIGEGLHNIVYTGDF 355
>gi|375082947|ref|ZP_09729988.1| Cleavage and polyadenylation specificity factor subunit like
protein [Thermococcus litoralis DSM 5473]
gi|374742377|gb|EHR78774.1| Cleavage and polyadenylation specificity factor subunit like
protein [Thermococcus litoralis DSM 5473]
Length = 651
Score = 99.0 bits (245), Expect = 1e-18, Method: Composition-based stats.
Identities = 63/204 (30%), Positives = 105/204 (51%), Gaps = 14/204 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMA-YND------HRQYPDFSRISKSCDFNNAI 60
LG +EVG+S +++ N ++ D G+++A ND H P+F+ + K +
Sbjct: 194 LGGFREVGRSALLLQTNESFVLVDFGVNVAALNDPKKGFPHFDAPEFTYVLKE----GLL 249
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D I+ITH HLDH G LP+ ++GPIY T PTR L ++ +D+ ++ G +
Sbjct: 250 DAIIITHAHLDHSGLLPYLFRYNLFDGPIYATPPTRDLMVLLQKDFIEIQ-QSNGIDPLY 308
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDY 178
I E +K I +D + + DL++ + AGH+LG+++ + VG+ + TGD+
Sbjct: 309 RMRDIKEVVKHTITLDYGEVRDISPDLRLTLHNAGHILGSSIVHLHVGNGLHNIAVTGDF 368
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
P R A +L+ LI E
Sbjct: 369 KFIPTRLFEPANAKFPRLETLIME 392
>gi|298247547|ref|ZP_06971352.1| RNA-metabolising metallo-beta-lactamase [Ktedonobacter racemifer
DSM 44963]
gi|297550206|gb|EFH84072.1| RNA-metabolising metallo-beta-lactamase [Ktedonobacter racemifer
DSM 44963]
Length = 776
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 58/204 (28%), Positives = 105/204 (51%), Gaps = 15/204 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND-HRQYPDFSRISKSCDFNNAIDCIVIT 66
LG EVG SC ++ + G++++ D GM A + + PD S + K + ++IT
Sbjct: 6 LGGASEVGASCTLLQVVGRKLLVDGGMRPAAREGQSRLPDLSLLDK-----QPPEALIIT 60
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRR----GEVEQFTS 122
H H+DH GALP + + PIY T TR L ++L D +++ GE + +
Sbjct: 61 HAHIDHTGALPLIASLLPHI-PIYATESTRVLTEVLLRDSVRIMEQEHLRPDGETPLYNA 119
Query: 123 DHIAECMKKVIAVDLKQT---VQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ + + ++ + +Q + D+ ++ AGH+LGAAM + + + + +TGD +
Sbjct: 120 EQVDAFLGRIQVMGFRQPFAPLAGSPDITVQFIPAGHILGAAMLFLETPEGTLFHTGDIS 179
Query: 180 MTPDRHLGAARIDRL-QLDLLITE 202
+T R + I+ L + D++ITE
Sbjct: 180 LTDQRTIKGLDINALPRADVMITE 203
>gi|295657429|ref|XP_002789283.1| endoribonuclease ysh1 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283953|gb|EEH39519.1| endoribonuclease ysh1 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 892
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 57/180 (31%), Positives = 100/180 (55%), Gaps = 16/180 (8%)
Query: 30 FDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVITHFHLDHIGALPFFTEICGYNGP 88
D GMH A P F DF+ +++D ++I+HFHLDH LP+ + G
Sbjct: 56 LDAGMHPAKEGFAALPFFD------DFDLSSVDILLISHFHLDHSAGLPYVLSKTNFKGR 109
Query: 89 IYMTYPTRALAPIMLEDYRKVL-----VDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQV 143
++MT+ T+A+ +++D +V D+R + +T + + ++ A+D T +
Sbjct: 110 VFMTHATKAIYKWLIQDNVRVSNTSSSSDQRTTL--YTEEEHLSTLPQIEAIDFNTTHTI 167
Query: 144 DKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDR-LQLDLLITE 202
+ ++I + AGHVLGAAMF + +++TGDY+ DRHL +A + + +++D+LITE
Sbjct: 168 NS-IRITPFPAGHVLGAAMFVISIAGLNILFTGDYSREEDRHLISAEVPKGIKIDVLITE 226
>gi|116753406|ref|YP_842524.1| beta-lactamase domain-containing protein [Methanosaeta thermophila
PT]
gi|116664857|gb|ABK13884.1| beta-lactamase domain protein [Methanosaeta thermophila PT]
Length = 635
Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 105/201 (52%), Gaps = 15/201 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQ----YPDFSRISKSCDFNNAIDCI 63
LG +EVG+SC++++ +I+ DCG+++ +D P+ +S+ ID +
Sbjct: 186 LGGCREVGRSCMLLSTPESKIIVDCGINVGSDDSATPYLYVPEVYPLSQ-------IDAV 238
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
V+TH HLDH G +P + GY GPIY T PTR L ++ DY +V R G+ + S
Sbjct: 239 VLTHAHLDHSGLVPMLYK-YGYEGPIYCTPPTRDLYVLLQLDYIEV-AGREGKRLPYDSS 296
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMT 181
I E +K I ++ + D ++ + AGH+LG+A+ + +GD + +TGD+
Sbjct: 297 MIREALKHTITLNYGDVTDIAPDTKLTMHNAGHILGSAIAHFHIGDGLYNVAFTGDFKYE 356
Query: 182 PDRHLGAARIDRLQLDLLITE 202
R A +L+ L+ E
Sbjct: 357 KTRLFDPAVNSFPRLETLVIE 377
>gi|305662491|ref|YP_003858779.1| KH-domain/beta-lactamase-domain-containing protein [Ignisphaera
aggregans DSM 17230]
gi|304377060|gb|ADM26899.1| KH-domain/beta-lactamase-domain protein [Ignisphaera aggregans DSM
17230]
Length = 641
Score = 98.6 bits (244), Expect = 1e-18, Method: Composition-based stats.
Identities = 62/199 (31%), Positives = 104/199 (52%), Gaps = 10/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQY-PD-FSRISKSCDFNNAIDCIVI 65
LG QEVG+S ++V R++ D G+ N R P+ F RI + ID +++
Sbjct: 185 LGGAQEVGRSAILVETAESRVLLDFGL----NPGRSLSPNAFPRIDLLNIEPDDIDAVIV 240
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH G +P+ + G+ G +Y T TR L ++L+DY ++ +R G FT +
Sbjct: 241 THAHLDHCGLVPYLFKY-GFRGAVYTTDATRDLMVLLLKDYLEI-SEREGTEPPFTLRDV 298
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPD 183
+ + I + + D+++ Y AGH+LG+A+ + +G+ +VYTGD+
Sbjct: 299 EQMLLHTITLKYDVVTDIAPDIRLTLYNAGHILGSAIAHLHIGNGFHNIVYTGDFKFGRT 358
Query: 184 RHLGAARIDRLQLDLLITE 202
R L A + ++D +I E
Sbjct: 359 RLLDRANYEFPRVDTIIME 377
>gi|383859338|ref|XP_003705152.1| PREDICTED: integrator complex subunit 11-like isoform 2 [Megachile
rotundata]
Length = 494
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/61 (70%), Positives = 54/61 (88%)
Query: 142 QVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLIT 201
+VD +L+I+AYYAGHVLGAAMF+ +VG ++VYTGDYNMTPDRHLGAA ID+ + DLLI+
Sbjct: 42 EVDSELEIKAYYAGHVLGAAMFWIRVGSQSIVYTGDYNMTPDRHLGAAWIDKCRPDLLIS 101
Query: 202 E 202
E
Sbjct: 102 E 102
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDH 41
I LGAGQ+VG+SC++V++ GK IM DCGMHM +ND
Sbjct: 4 IKVTPLGAGQDVGRSCILVSMGGKNIMLDCGMHMGFNDE 42
>gi|448689042|ref|ZP_21694779.1| mRNA 3'-end processing factor-like protein [Haloarcula japonica DSM
6131]
gi|445778912|gb|EMA29854.1| mRNA 3'-end processing factor-like protein [Haloarcula japonica DSM
6131]
Length = 638
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG N + Y D + N ID +V+T
Sbjct: 186 TLGCCREVGRAAFILSTPDTRILIDCGNKPGANGEQPYLDIPEAFGAG--TNGIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P E GY+GPIY T PTR L ++ DY D G + S+ +
Sbjct: 244 HAHLDHSALVPLLFEY-GYDGPIYCTEPTRDLMGLLTLDYLDTAADD-GRTPPYDSEMVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGHVLG+++ + VGD + ++GD + R
Sbjct: 302 EAIKHTIPLEYGDVTDIAPDIKLTLHNAGHVLGSSVCHFHVGDGLYNVAFSGDIHYDDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFDGAVNDFPRVETLVLE 379
>gi|15668334|ref|NP_247130.1| putative mRNA 3'-end processing factor 3 [Methanocaldococcus
jannaschii DSM 2661]
gi|2495836|sp|Q57626.1|Y162_METJA RecName: Full=Uncharacterized protein MJ0162
gi|1590919|gb|AAB98146.1| putative mRNA 3'-end processing factor 3 [Methanocaldococcus
jannaschii DSM 2661]
Length = 421
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G Q++G SCV V R++ DCGM PD I K D A+D ++++H
Sbjct: 8 GGCQQIGMSCVEVETQKGRVLLDCGMS---------PDTGEIPKVDD--KAVDAVIVSHA 56
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GA+PF+ IY T+PT A +M +R D + + + I
Sbjct: 57 HLDHCGAIPFYK-----FKKIYCTHPT---ADLMFITWR----DTLNLTKAYKEEDIQHA 104
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M+ + ++ + Q+ ++++ + Y AGH+LG+A Y +V ++YTGD N R L
Sbjct: 105 MENIECLNYYEERQITENIKFKFYNAGHILGSASIYLEVDGKKILYTGDINEGVSRTLLP 164
Query: 189 ARIDRLQLDLLITE 202
A D ++D+LI E
Sbjct: 165 ADTDIDEIDVLIIE 178
>gi|282165070|ref|YP_003357455.1| hypothetical protein MCP_2400 [Methanocella paludicola SANAE]
gi|282157384|dbj|BAI62472.1| conserved hypothetical protein [Methanocella paludicola SANAE]
Length = 636
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 100/193 (51%), Gaps = 15/193 (7%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDHRQY---PDFSRISKSCDFNN 58
I LG +EVG+S +++ RI+ DCG+ A + Y P+ S +S
Sbjct: 181 IRITTLGGCKEVGRSSFLLSTPETRILIDCGVSTGAEANGTPYLYVPEVSPLSN------ 234
Query: 59 AIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVE 118
ID +V+TH HLDH G +P + GY GP+YMT PTR L ++ DY +V +R G+
Sbjct: 235 -IDAVVLTHAHLDHCGMIPLLYK-YGYEGPVYMTPPTRDLMALLQLDYIEV-ANREGKRP 291
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTG 176
+ S I E +K I ++ + D+++ Y +GH+LG+A+ + VG+ + ++G
Sbjct: 292 PYESAMIRETLKHTITLNYGDVTDIAPDIRLTFYNSGHILGSAIAHFHVGEGLYNVAFSG 351
Query: 177 DYNMTPDRHLGAA 189
D+ R A
Sbjct: 352 DFKYEKTRLFDPA 364
>gi|448307837|ref|ZP_21497725.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
bangense JCM 10635]
gi|445594972|gb|ELY49098.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
bangense JCM 10635]
Length = 636
Score = 98.2 bits (243), Expect = 2e-18, Method: Composition-based stats.
Identities = 61/197 (30%), Positives = 95/197 (48%), Gaps = 8/197 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ V+ R++ DCG Y D ID +V+TH
Sbjct: 186 LGCCREVGRASFVLHTPNTRVLIDCGDKPGAEGEVPYLHAPEAMPLTD----IDAVVLTH 241
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH LP + GYNGPIY T PTR L ++ DY V + G ++S+ + +
Sbjct: 242 AHLDHSALLPLLFKY-GYNGPIYTTEPTRDLMGLLQLDYLSV-ASKEGRSPPYSSEQVRQ 299
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
+ I V+ + D+++ + AGH+LG+A + VGD +V++GD + P R
Sbjct: 300 AIMHTIPVEYGDVTDIAPDIKLTMHNAGHILGSASAHFHVGDGFHNVVFSGDVHYEPTRL 359
Query: 186 LGAARIDRLQLDLLITE 202
A D + + +I E
Sbjct: 360 FNGAVNDFPRAETMIME 376
>gi|319790032|ref|YP_004151665.1| RNA-metabolising metallo-beta-lactamase [Thermovibrio ammonificans
HB-1]
gi|317114534|gb|ADU97024.1| RNA-metabolising metallo-beta-lactamase [Thermovibrio ammonificans
HB-1]
Length = 419
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 9/197 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
+G G E+G SC ++NG I+ D G+ ++ YPDF + +D IV+TH
Sbjct: 8 IGGGNEIGASCYFYSVNGVNIVVDAGIR--FSKENPYPDFDLLKA---LAPKLDAIVVTH 62
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV-LVDRRGEVEQFTSDHIA 126
H+DH GA+ +E+ + PIY T+ T L +M+ED KV + + E +
Sbjct: 63 AHVDHCGAVHLLSELYP-DTPIYATFETAQLLSLMVEDAIKVRYIGGESQEEWREYSLLD 121
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVY-TGDYNMTPDRH 185
+ + ++ + + V KD++I + AGH+LGAA + G+ VY TGD ++ R
Sbjct: 122 KALSRLERREFHDKITV-KDVEIELFPAGHILGAASVVIRYGEGESVYHTGDISLFEQRT 180
Query: 186 LGAARIDRLQLDLLITE 202
+GAA + LL++E
Sbjct: 181 VGAAELPEPNPSLLVSE 197
>gi|256810164|ref|YP_003127533.1| beta-lactamase [Methanocaldococcus fervens AG86]
gi|256793364|gb|ACV24033.1| beta-lactamase domain protein [Methanocaldococcus fervens AG86]
Length = 421
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 96/194 (49%), Gaps = 23/194 (11%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G Q++G SCV V R++ DCGM PD I K D ID ++I+H
Sbjct: 8 GGCQQIGMSCVEVETQKSRVLLDCGMS---------PDTGEIPKVDD--KLIDAVIISHA 56
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GA+PF+ IY T+PT A +M +R D + + + I +
Sbjct: 57 HLDHCGAVPFYK-----FKKIYCTHPT---ADLMFITWR----DTLNLTKAYKEEDIQQA 104
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M+ + ++ + Q+ D++ + Y AGH+LG+A Y + ++YTGD N R L
Sbjct: 105 MESIECLNYYEERQITDDIKFKFYNAGHILGSASIYLEADGKKILYTGDINEGISRTLLP 164
Query: 189 ARIDRLQLDLLITE 202
A D ++D+LI E
Sbjct: 165 ADTDIDEIDVLIIE 178
>gi|302348117|ref|YP_003815755.1| exonuclease [Acidilobus saccharovorans 345-15]
gi|302328529|gb|ADL18724.1| Putative exonuclease [Acidilobus saccharovorans 345-15]
Length = 674
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 57/186 (30%), Positives = 94/186 (50%), Gaps = 7/186 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG+ EVG+SC+++ + +I+ D G + YP F D +D +VI+H
Sbjct: 200 LGSFGEVGRSCILIDTSESKILLDVGFAQSGFGPDAYPMFDAPELRLD---ELDAVVISH 256
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
H+DH+G P + GY GPIYMT TR +A +ML+D+ + + R G+ +T +
Sbjct: 257 AHMDHVGLAPMLYKY-GYRGPIYMTPATRDIATLMLQDFINLYI-REGKEPPYTQKDLIT 314
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+ I V+ + D ++ AGH+LG+A+ + +G ++YTGD R
Sbjct: 315 MLNHTITVNYDVVTDLSPDAKLTFSDAGHILGSALVHIHIGQGLYNILYTGDLKYYSVRD 374
Query: 186 LGAARI 191
A R+
Sbjct: 375 NKALRL 380
>gi|332862132|ref|XP_001152447.2| PREDICTED: LOW QUALITY PROTEIN: integrator complex subunit 11,
partial [Pan troglodytes]
Length = 332
Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/61 (73%), Positives = 53/61 (86%)
Query: 142 QVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLIT 201
QVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLIT
Sbjct: 5 QVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLIT 64
Query: 202 E 202
E
Sbjct: 65 E 65
>gi|350638481|gb|EHA26837.1| hypothetical protein ASPNIDRAFT_35736 [Aspergillus niger ATCC 1015]
Length = 915
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 69/242 (28%), Positives = 112/242 (46%), Gaps = 50/242 (20%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDF-------------------- 47
LG G EVG+SC ++ GK +M D GMH A P F
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLSTVDILLISQYVGQS 89
Query: 48 ------------SRISKSCDFNNAIDCI----------VITHFHLDHIGALPFFTEICGY 85
S +SK F A+D I ++ FH+DH ALP+ +
Sbjct: 90 LFCVPLVTLPTPSPLSKLGLFM-AVDSIPHHISPWFPSMVADFHVDHSSALPYVLSKTNF 148
Query: 86 NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT----SDHIAECMKKVIAVDLKQTV 141
G ++MT+ T+A+ +++D +V ++ T DH++ + + +D T
Sbjct: 149 KGRVFMTHATKAIYKWLIQDNVRVSSTASSSDQRTTLYTEQDHLST-LPLIETIDFNTTH 207
Query: 142 QVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDR-LQLDLLI 200
++ ++I + AGHVLGAAMF + +++TGDY+ DRHL A + + +++D+LI
Sbjct: 208 TINS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREEDRHLIPAEVPKGVKIDVLI 266
Query: 201 TE 202
TE
Sbjct: 267 TE 268
>gi|443926404|gb|ELU45071.1| mRNA 3'-end-processing protein YSH1 [Rhizoctonia solani AG-1 IA]
Length = 409
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 97/196 (49%), Gaps = 26/196 (13%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC V+ GK ++ D G+H A++ P + S +D I++T
Sbjct: 1 MLGAGQEVGRSCCVIKYRGKTVVCDAGVHPAHSGLASLPFVDELDWST-----VDAILVT 55
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
+ + G G +YMT+PT+A+ Y+ ++ G +T ++
Sbjct: 56 QY-----------VSLQG-KGKVYMTHPTKAV-------YKYIITA--GNESLYTPLDVS 94
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ +I + Q + L Y+AGHVLGA MF + ++YTGDY+ DRHL
Sbjct: 95 LSLSHIIPISAHQLISPTPGLSFTPYHAGHVLGACMFLIDIAGLQILYTGDYSREEDRHL 154
Query: 187 GAARIDRLQLDLLITE 202
A + ++ DLLI E
Sbjct: 155 VRAELPPIRPDLLIVE 170
>gi|424814262|ref|ZP_18239440.1| putative metal-dependent Rnase [Candidatus Nanosalina sp. J07AB43]
gi|339757878|gb|EGQ43135.1| putative metal-dependent Rnase [Candidatus Nanosalina sp. J07AB43]
Length = 544
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 107/200 (53%), Gaps = 9/200 (4%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMA--YNDHRQYPDFSRISKSCDFNNAIDCIV 64
LG+ ++VG+SC ++ ++ DCG++ + +P + + D +D ++
Sbjct: 177 TLGSCRQVGRSCFLLQTEESNVLLDCGINPSAESGSPENFPYLN--APELDLQQ-LDAVI 233
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
++H H+DH G +P+ ++ GY+GP+Y T PTR L ++ DY L G + S H
Sbjct: 234 LSHAHMDHCGMIPYLYKM-GYDGPLYCTEPTRDLMIMLALDYIG-LAHGEGGNAPYDSSH 291
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTP 182
I + +K+ I + + + D+++ AGH++G+A+ + VG+ ++YTGDYN
Sbjct: 292 IKKAVKRTITPEFGEVTDITPDMRLTLKNAGHIIGSALCHIHVGEGLHNILYTGDYNYDS 351
Query: 183 DRHLGAARIDRLQLDLLITE 202
L A + +++ +ITE
Sbjct: 352 TEMLRTADTNFQRVETMITE 371
>gi|448414471|ref|ZP_21577540.1| mRNA 3-end processing factor-like protein [Halosarcina pallida JCM
14848]
gi|445682037|gb|ELZ34461.1| mRNA 3-end processing factor-like protein [Halosarcina pallida JCM
14848]
Length = 634
Score = 97.4 bits (241), Expect = 3e-18, Method: Composition-based stats.
Identities = 61/200 (30%), Positives = 102/200 (51%), Gaps = 14/200 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND---HRQYPDFSRISKSCDFNNAIDCIV 64
LG +EVG++ +++ RI+ DCG + Q P+ + I+ A+D +V
Sbjct: 183 LGCCREVGRASFILSTPETRILVDCGDKPGAEGEVPYLQAPEANPIA-------ALDAVV 235
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
+TH HLDH LP + GY+GP+Y+T PTR L ++ DY V + G + S+
Sbjct: 236 LTHAHLDHSALLPLLFKY-GYDGPVYLTQPTRDLMGLLQLDYLDVAA-KEGRTPPYGSEM 293
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTP 182
+ E ++ I VD + D+++ AGHVLG+A+ + +GD +V++GD +
Sbjct: 294 VREELRHTITVDYGDVTDIAPDVKLTFANAGHVLGSAVTHFHIGDGFHNVVFSGDIHYED 353
Query: 183 DRHLGAARIDRLQLDLLITE 202
R A D + + L+ E
Sbjct: 354 TRLFNGASNDFPRAETLVME 373
>gi|386002906|ref|YP_005921205.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta harundinacea
6Ac]
gi|357210962|gb|AET65582.1| RNA-metabolising metallo-beta-lactamase [Methanosaeta harundinacea
6Ac]
Length = 635
Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 104/197 (52%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC++++ +I+ DCG+++ +D + + ++ N ID +V+TH
Sbjct: 186 LGGCREVGRSCMLLSTPESKIIVDCGVNVGSDDSAT--PYLYVPEAYPLNQ-IDAVVLTH 242
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P + GY GPIY T PTR L ++ DY + R G+ + S I E
Sbjct: 243 AHLDHAGLVPMLYKY-GYEGPIYCTPPTRDLFVLLQLDYIDI-AGREGKRMPYESAMIRE 300
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
+K I ++ + D ++ + AGH+LG+++ + VGD + +TGD+ R
Sbjct: 301 ALKHTITLNYGDVTDIAPDTKLTMHNAGHILGSSICHFHVGDGLYNVAFTGDFKFEKTRL 360
Query: 186 LGAARIDRLQLDLLITE 202
A +L+ L+ E
Sbjct: 361 FDPAVHTFPRLETLVME 377
>gi|146296048|ref|YP_001179819.1| beta-lactamase domain-containing protein [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409624|gb|ABP66628.1| beta-lactamase domain protein [Caldicellulosiruptor saccharolyticus
DSM 8903]
Length = 821
Score = 97.1 bits (240), Expect = 3e-18, Method: Composition-based stats.
Identities = 53/203 (26%), Positives = 104/203 (51%), Gaps = 14/203 (6%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LG +EVG SCV++ GK I+ D G+ M + + P+ + + D
Sbjct: 1 MEIVFLGGAKEVGASCVLIKAGGKNILLDSGIRMKED---KLPNLQLLREL----GGADV 53
Query: 63 IVITHFHLDHIGALPFFTEICGYNGP---IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
+I+H HLDHIG+LP P Y PT+ L ++L D K++ + E+
Sbjct: 54 CLISHAHLDHIGSLPLIAR----EYPHIFFYTNQPTKDLIKVLLYDSLKIMDAKEDEIPI 109
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ ++ + + + I T + + +++ + AGH+LGA+M + + + +++YTGD++
Sbjct: 110 YAEKNVEDLLDRTITYGFNYTFEPLEGIKVTFFPAGHILGASMIFIQTQEGSVLYTGDFS 169
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
+ A I +++ D++I E
Sbjct: 170 TDKQLTVDKASIPKIRPDVVICE 192
>gi|389846317|ref|YP_006348556.1| mRNA 3'-end processing factor-like protein [Haloferax mediterranei
ATCC 33500]
gi|448616063|ref|ZP_21664773.1| mRNA 3'-end processing factor-like protein [Haloferax mediterranei
ATCC 33500]
gi|388243623|gb|AFK18569.1| mRNA 3'-end processing factor-like protein [Haloferax mediterranei
ATCC 33500]
gi|445750718|gb|EMA02155.1| mRNA 3'-end processing factor-like protein [Haloferax mediterranei
ATCC 33500]
Length = 640
Score = 97.1 bits (240), Expect = 4e-18, Method: Composition-based stats.
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ +V+ RI+ DCG +D + Q P+ N++D +V+
Sbjct: 187 LGCCREVGRASFIVSTPETRILVDCGDKPGSDDVPYLQVPEALGSGA-----NSLDAVVL 241
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 242 THAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDV-ASKEGRAPPYESEMV 299
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD +
Sbjct: 300 REAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYEDT 359
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 360 RLFNGAVNDFPRVETLVLE 378
>gi|429217522|ref|YP_007175512.1| KH-domain/beta-lactamase-domain-containing protein [Caldisphaera
lagunensis DSM 15908]
gi|429134051|gb|AFZ71063.1| KH-domain/beta-lactamase-domain protein [Caldisphaera lagunensis
DSM 15908]
Length = 667
Score = 96.7 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 57/173 (32%), Positives = 91/173 (52%), Gaps = 9/173 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG+ EVG+S +++ +I+ D G + YP F + +F +D IVI+
Sbjct: 187 LGSFGEVGRSSILLDTGESKILLDAGFAQSGYSVDAYPHFD----APEFRLEDLDAIVIS 242
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H+DH+G LP + GY GP YMT PTR + +ML+D+ + V R G+ FT I
Sbjct: 243 HAHMDHMGLLPILYKY-GYRGPAYMTPPTRDITVLMLKDFMDLFV-REGKEPPFTMKDIN 300
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGD 177
+ + I V+ + D ++ AGH+LG+A+ + +G ++YTGD
Sbjct: 301 TMLTRTITVNYNVVTDLSPDAKLTFSDAGHILGSALTHIHIGQGLFNLLYTGD 353
>gi|325294571|ref|YP_004281085.1| RNA-metabolising metallo-beta-lactamase [Desulfurobacterium
thermolithotrophum DSM 11699]
gi|325065019|gb|ADY73026.1| RNA-metabolising metallo-beta-lactamase [Desulfurobacterium
thermolithotrophum DSM 11699]
Length = 418
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 103/197 (52%), Gaps = 9/197 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
+G G E+G S + + G +I+ D G+ +N YPDF + +D I +TH
Sbjct: 8 IGGGNEIGASSYLYVLGGVKILIDSGIR--FNAKEPYPDFELLKVLAP---ELDAIFVTH 62
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV-LVDRRGEVEQFTSDHIA 126
H+DH G++ + + + PIY T+ T L +M+ED KV + + E E +
Sbjct: 63 AHIDHCGSIHILSSLYP-DTPIYTTHETAQLLSLMVEDAIKVKYIKEKSEDEWKEYKLLD 121
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVY-TGDYNMTPDRH 185
E ++ + T+ + KD++++ AGH+LGAA F DS+ +Y TGD ++ P +
Sbjct: 122 ETFMRLERREFFDTLNI-KDIEVKFLPAGHILGAAAFQINYDDSSSIYHTGDISLQPQKT 180
Query: 186 LGAARIDRLQLDLLITE 202
+ AA + ++LL+TE
Sbjct: 181 VEAAHLPSSSVNLLVTE 197
>gi|448596874|ref|ZP_21654012.1| mRNA 3-end processing factor-like protein [Haloferax alexandrinus
JCM 10717]
gi|445740755|gb|ELZ92260.1| mRNA 3-end processing factor-like protein [Haloferax alexandrinus
JCM 10717]
Length = 640
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ +V+ RI+ DCG +D + Q P+ N++D +V+
Sbjct: 187 LGCCREVGRASFIVSTPETRILVDCGDKPGSDDVPYLQVPEALGSGA-----NSLDAVVL 241
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 242 THAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDV-ASKEGRTPPYESEMV 299
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD +
Sbjct: 300 REAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 359
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 360 RLFNGAVNDFPRVETLVLE 378
>gi|448542567|ref|ZP_21624729.1| mRNA 3-end processing factor-like protein [Haloferax sp. ATCC
BAA-646]
gi|448549964|ref|ZP_21628569.1| mRNA 3-end processing factor-like protein [Haloferax sp. ATCC
BAA-645]
gi|445707046|gb|ELZ58912.1| mRNA 3-end processing factor-like protein [Haloferax sp. ATCC
BAA-646]
gi|445713012|gb|ELZ64793.1| mRNA 3-end processing factor-like protein [Haloferax sp. ATCC
BAA-645]
Length = 640
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ +V+ RI+ DCG +D + Q P+ N++D +V+
Sbjct: 187 LGCCREVGRASFIVSTPETRILVDCGDKPGSDDVPYLQVPEALGSGA-----NSLDAVVL 241
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 242 THAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDV-ASKEGRTPPYESEMV 299
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD +
Sbjct: 300 REAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 359
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 360 RLFNGAVNDFPRVETLVLE 378
>gi|433424491|ref|ZP_20406487.1| mRNA 3-end processing factor-like protein [Haloferax sp. BAB2207]
gi|448572052|ref|ZP_21640141.1| mRNA 3-end processing factor-like protein [Haloferax lucentense DSM
14919]
gi|432198078|gb|ELK54402.1| mRNA 3-end processing factor-like protein [Haloferax sp. BAB2207]
gi|445721085|gb|ELZ72754.1| mRNA 3-end processing factor-like protein [Haloferax lucentense DSM
14919]
Length = 640
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ +V+ RI+ DCG +D + Q P+ N++D +V+
Sbjct: 187 LGCCREVGRASFIVSTPETRILVDCGDKPGSDDVPYLQVPEALGSGA-----NSLDAVVL 241
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 242 THAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDV-ASKEGRTPPYESEMV 299
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD +
Sbjct: 300 REAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 359
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 360 RLFNGAVNDFPRVETLVLE 378
>gi|292655037|ref|YP_003534934.1| mRNA 3-end processing factor-like protein [Haloferax volcanii DS2]
gi|448292661|ref|ZP_21483067.1| mRNA 3-end processing factor-like protein [Haloferax volcanii DS2]
gi|291372149|gb|ADE04376.1| mRNA 3-end processing factor homolog [Haloferax volcanii DS2]
gi|445572417|gb|ELY26957.1| mRNA 3-end processing factor-like protein [Haloferax volcanii DS2]
Length = 640
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ +V+ RI+ DCG +D + Q P+ N++D +V+
Sbjct: 187 LGCCREVGRASFIVSTPETRILVDCGDKPGSDDVPYLQVPEALGSGA-----NSLDAVVL 241
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 242 THAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDV-ASKEGRTPPYESEMV 299
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD +
Sbjct: 300 REAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 359
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 360 RLFNGAVNDFPRVETLVLE 378
>gi|448613280|ref|ZP_21663160.1| mRNA 3'-end processing factor-like protein [Haloferax mucosum ATCC
BAA-1512]
gi|445740177|gb|ELZ91683.1| mRNA 3'-end processing factor-like protein [Haloferax mucosum ATCC
BAA-1512]
Length = 640
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ +V+ RI+ DCG +D + Q P+ N++D +V+
Sbjct: 187 LGCCREVGRASFIVSTPETRILVDCGDKPGSDDVPYLQVPEALGSGA-----NSLDAVVL 241
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 242 THAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDV-ASKEGRAPPYESEMV 299
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD +
Sbjct: 300 REAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYEDT 359
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 360 RLFNGAVNDFPRVETLVLE 378
>gi|359415409|ref|ZP_09207872.1| mRNA cleavage/polyadenylation specificity factor, 100 kD subunit
[Candidatus Haloredivivus sp. G17]
gi|358034266|gb|EHK02708.1| mRNA cleavage/polyadenylation specificity factor, 100 kD subunit
[Candidatus Haloredivivus sp. G17]
Length = 623
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 56/199 (28%), Positives = 105/199 (52%), Gaps = 9/199 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQ--YPDFSRISKSCDFNNAIDCIVI 65
LG ++VG+SCV+V ++ D G++ Q +P + + D + +D +V+
Sbjct: 178 LGGFRQVGRSCVLVQTEESNVLMDAGINPGAEPGSQDNFPYLN--APELDLRD-LDAVVL 234
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
+H H+DH G +P+ ++ GY+GP+Y T PTR + ++ DY L + S I
Sbjct: 235 SHAHMDHCGMIPYLYKM-GYDGPLYCTKPTRDMMIMLTLDYIG-LAHSENNRAPYDSSAI 292
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
+ +K+ I D + + D+++ +GH++G+A+ + VG+ ++YTGDYN
Sbjct: 293 KKAVKRTITPDYGEVTDITPDMRLTLKNSGHIIGSALTHIHVGEGLHNILYTGDYNYDTT 352
Query: 184 RHLGAARIDRLQLDLLITE 202
L A + +++ +ITE
Sbjct: 353 ETLREADTNFQRVETMITE 371
>gi|448605870|ref|ZP_21658463.1| mRNA 3-end processing factor-like protein [Haloferax sulfurifontis
ATCC BAA-897]
gi|448625251|ref|ZP_21671018.1| mRNA 3-end processing factor-like protein [Haloferax denitrificans
ATCC 35960]
gi|445741193|gb|ELZ92697.1| mRNA 3-end processing factor-like protein [Haloferax sulfurifontis
ATCC BAA-897]
gi|445749013|gb|EMA00459.1| mRNA 3-end processing factor-like protein [Haloferax denitrificans
ATCC 35960]
Length = 640
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ +V+ RI+ DCG +D + Q P+ N++D +V+
Sbjct: 187 LGCCREVGRASFIVSTPETRILVDCGDKPGSDDVPYLQVPEALGSGA-----NSLDAVVL 241
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 242 THAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDV-ASKEGRTPPYESEMV 299
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD +
Sbjct: 300 REAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 359
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 360 RLFNGAVNDFPRVETLVLE 378
>gi|448582055|ref|ZP_21645559.1| mRNA 3-end processing factor-like protein [Haloferax gibbonsii ATCC
33959]
gi|445731703|gb|ELZ83286.1| mRNA 3-end processing factor-like protein [Haloferax gibbonsii ATCC
33959]
Length = 640
Score = 96.7 bits (239), Expect = 5e-18, Method: Composition-based stats.
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ +V+ RI+ DCG +D + Q P+ N++D +V+
Sbjct: 187 LGCCREVGRASFIVSTPETRILVDCGDKPGSDDVPYLQVPEALGSGA-----NSLDAVVL 241
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 242 THAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDV-ASKEGRTPPYESEMV 299
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD +
Sbjct: 300 REAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 359
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 360 RLFNGAVNDFPRVETLVLE 378
>gi|333910570|ref|YP_004484303.1| beta-lactamase domain-containing protein [Methanotorris igneus Kol
5]
gi|333751159|gb|AEF96238.1| beta-lactamase domain protein [Methanotorris igneus Kol 5]
Length = 419
Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 94/194 (48%), Gaps = 24/194 (12%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G ++G SC+ + RI+ DCGM P + I K + +D ++++H
Sbjct: 8 GGCHQIGMSCIEIDTKKSRILLDCGMD---------PTNNAIPK---VDENVDAVIVSHA 55
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GA+PF+ IY T PT L I +D + + + + I
Sbjct: 56 HLDHCGAIPFYK-----FKKIYCTTPTADLMYITWKDTLNL-------SKSYKEEDIQRS 103
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
+ ++ K+ Q+ +D+ ++ Y AGH+LG+A Y + ++YTGD N TP R L
Sbjct: 104 LNNTETLNYKEEKQITEDITLKFYNAGHILGSASIYLDIDGKKILYTGDINETPTRTLLP 163
Query: 189 ARIDRLQLDLLITE 202
A D ++D+LI E
Sbjct: 164 ADTDVDEIDVLIIE 177
>gi|300712088|ref|YP_003737902.1| hypothetical protein HacjB3_13645 [Halalkalicoccus jeotgali B3]
gi|448295777|ref|ZP_21485841.1| hypothetical protein C497_08854 [Halalkalicoccus jeotgali B3]
gi|299125771|gb|ADJ16110.1| hypothetical protein HacjB3_13645 [Halalkalicoccus jeotgali B3]
gi|445583876|gb|ELY38205.1| hypothetical protein C497_08854 [Halalkalicoccus jeotgali B3]
Length = 638
Score = 96.3 bits (238), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 100/198 (50%), Gaps = 7/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ V++ RI+ DCG +D P N+ID +V+T
Sbjct: 186 TLGCCREVGRAAFVLSTADTRILIDCGDKPGSDD---VPYLQVPEALGSGANSIDAVVLT 242
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH LP + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 243 HAHLDHSALLPLLFK-YGYDGPIYTTEPTRDLMGLLQLDYLDVAA-KEGRTPPYASEMVR 300
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +G+ + ++GD + R
Sbjct: 301 ETIKHTIPIEYGDVTDIAPDVKLTMHNAGHILGSAVSHFHIGNGMYNVAFSGDIHYDETR 360
Query: 185 HLGAARIDRLQLDLLITE 202
L A D +++ L+ E
Sbjct: 361 LLNGAVNDFPRVETLVLE 378
>gi|448561310|ref|ZP_21634662.1| mRNA 3-end processing factor-like protein [Haloferax prahovense DSM
18310]
gi|445721542|gb|ELZ73210.1| mRNA 3-end processing factor-like protein [Haloferax prahovense DSM
18310]
Length = 640
Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ +V+ RI+ DCG +D + Q P+ N++D +V+
Sbjct: 187 LGCCREVGRASFIVSTPETRILVDCGDKPGSDDVPYLQVPEALGSGA-----NSLDAVVL 241
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 242 THAHLDHSALVPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDV-ASKEGRTPPYESEMV 299
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD +
Sbjct: 300 REAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 359
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 360 RLFNGAVNDFPRVETLVLE 378
>gi|119576647|gb|EAW56243.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_i
[Homo sapiens]
Length = 502
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 52/60 (86%)
Query: 143 VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
VD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 46 VDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 105
>gi|238585297|ref|XP_002390824.1| hypothetical protein MPER_09839 [Moniliophthora perniciosa FA553]
gi|215454706|gb|EEB91754.1| hypothetical protein MPER_09839 [Moniliophthora perniciosa FA553]
Length = 220
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 52/148 (35%), Positives = 81/148 (54%), Gaps = 5/148 (3%)
Query: 58 NAIDCIVITHFHLDHIGALPFFTEICGYN---GPIYMTYPTRALAPIMLEDYRKVLVDRR 114
+ +D I+ITHFHLDH AL + TE + G +YMT+PT+AL M++D+ ++
Sbjct: 13 STVDAILITHFHLDHAAALTYITEKTNFKDGKGKVYMTHPTKALHKFMMQDFLRMSSSSS 72
Query: 115 GEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVY 174
+ F+ + + +I + Q + + Y+AGHVLGA MF + ++Y
Sbjct: 73 DAL--FSPLDMTMSLSSIIPISAHQVITPCPGVTFTPYHAGHVLGACMFLIDIYGLRILY 130
Query: 175 TGDYNMTPDRHLGAARIDRLQLDLLITE 202
TGDY+ DRHL A I ++ D+LI E
Sbjct: 131 TGDYSREEDRHLVKAEIPPIRPDVLIVE 158
>gi|170289661|ref|YP_001736477.1| RNA processing exonuclease [Candidatus Korarchaeum cryptofilum
OPF8]
gi|170173741|gb|ACB06794.1| Predicted exonuclease of the beta-lactamase fold involved in RNA
processing [Candidatus Korarchaeum cryptofilum OPF8]
Length = 424
Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 109/203 (53%), Gaps = 15/203 (7%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
++I CL G +EVGKS +++ +++ D GM + +Q+P+F I + +
Sbjct: 6 ISITCL--GGTREVGKSAILLEAGRTKVLLDYGMKLI---PKQHPEFPPIPEE------V 54
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D +++TH HLDH GALP G PIY T+ ++L D KV +G +
Sbjct: 55 DAVLLTHAHLDHSGALPRLVS-HGMEVPIYALDITKYYTELLLYDSIKV-AKLKGHNLGY 112
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+ + + ++ +D +V DL++ A AGH+ G+AMF+ ++++YTGD+N
Sbjct: 113 GARDVNKTLENFRTIDFNIPFKVG-DLEVTAIDAGHIPGSAMFHISYDGTSLLYTGDFNT 171
Query: 181 TPDRHLGAARIDRL-QLDLLITE 202
R + ARI+ + ++D+LITE
Sbjct: 172 VESRLMPPARIEDVPKVDILITE 194
>gi|448574890|ref|ZP_21641413.1| mRNA 3-end processing factor-like protein [Haloferax larsenii JCM
13917]
gi|445732569|gb|ELZ84151.1| mRNA 3-end processing factor-like protein [Haloferax larsenii JCM
13917]
Length = 640
Score = 95.9 bits (237), Expect = 8e-18, Method: Composition-based stats.
Identities = 59/199 (29%), Positives = 101/199 (50%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ +V+ RI+ DCG D + Q P+ N++D +V+
Sbjct: 187 LGCCREVGRASFIVSTPETRILVDCGDKPGSEDVPYLQVPEALGSGA-----NSLDAVVL 241
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 242 THAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDV-ASKEGRTPPYESEMV 299
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD +
Sbjct: 300 REAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYEDT 359
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 360 RLFNGAVNDFPRVETLVLE 378
>gi|403297740|ref|XP_003939710.1| PREDICTED: integrator complex subunit 11 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 499
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 52/60 (86%)
Query: 143 VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
VD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 43 VDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 102
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 29/33 (87%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND 40
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFND 41
>gi|402852595|ref|XP_003891003.1| PREDICTED: integrator complex subunit 11 isoform 2 [Papio anubis]
Length = 499
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 52/60 (86%)
Query: 143 VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
VD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 43 VDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 102
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 29/33 (87%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND 40
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFND 41
>gi|296206479|ref|XP_002750226.1| PREDICTED: integrator complex subunit 11 isoform 2 [Callithrix
jacchus]
Length = 499
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 52/60 (86%)
Query: 143 VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
VD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 43 VDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 102
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 29/33 (87%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND 40
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFND 41
>gi|395840793|ref|XP_003793236.1| PREDICTED: integrator complex subunit 11 isoform 2 [Otolemur
garnettii]
Length = 499
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 52/60 (86%)
Query: 143 VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
VD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 43 VDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 102
Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 29/33 (87%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND 40
LGAGQ+VG+SC++V+I GK +M DCGMHM ++D
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSD 41
>gi|55377080|ref|YP_134930.1| mRNA 3'-end processing factor-like protein [Haloarcula marismortui
ATCC 43049]
gi|55229805|gb|AAV45224.1| mRNA 3'-end processing factor-like [Haloarcula marismortui ATCC
43049]
Length = 638
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG N + Y D + N ID +V+T
Sbjct: 186 TLGCCREVGRAAFILSTPDTRILIDCGNKPGANGEQPYLDIPEAFGAG--TNGIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P E GY+GPIY T PTR L ++ D+ D G + S+ +
Sbjct: 244 HAHLDHSALVPLLFEY-GYDGPIYCTEPTRDLMGLLTLDHLDTAADD-GRTPPYDSEMVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+++ + VGD + ++GD + R
Sbjct: 302 EAIKHTIPLEYGDVTDIAPDIKLTLHNAGHILGSSVCHFHVGDGLYNVAFSGDIHYDDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFDGAVNDFPRVETLVLE 379
>gi|374253828|ref|NP_001243392.1| integrator complex subunit 11 isoform 5 [Homo sapiens]
gi|119576639|gb|EAW56235.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_c
[Homo sapiens]
gi|119576644|gb|EAW56240.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_c
[Homo sapiens]
Length = 499
Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 52/60 (86%)
Query: 143 VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
VD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 43 VDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 102
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 29/33 (87%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND 40
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFND 41
>gi|426327396|ref|XP_004024504.1| PREDICTED: integrator complex subunit 11 isoform 4 [Gorilla gorilla
gorilla]
Length = 499
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 52/60 (86%)
Query: 143 VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
VD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 43 VDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 102
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 29/33 (87%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND 40
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFND 41
>gi|397476280|ref|XP_003809535.1| PREDICTED: integrator complex subunit 11 isoform 3 [Pan paniscus]
Length = 499
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 52/60 (86%)
Query: 143 VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
VD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 43 VDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 102
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 29/33 (87%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND 40
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFND 41
>gi|10433243|dbj|BAB13943.1| unnamed protein product [Homo sapiens]
Length = 499
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 44/60 (73%), Positives = 52/60 (86%)
Query: 143 VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
VD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 43 VDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 102
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 29/33 (87%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND 40
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFND 41
>gi|374628280|ref|ZP_09700665.1| KH-domain/beta-lactamase-domain protein [Methanoplanus limicola DSM
2279]
gi|373906393|gb|EHQ34497.1| KH-domain/beta-lactamase-domain protein [Methanoplanus limicola DSM
2279]
Length = 630
Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 14/201 (6%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQY---PDFSRISKSCDFNNAIDCI 63
LG +EVG++ +++ +I+ DCG ND Y P+ + N++D +
Sbjct: 183 TLGCCREVGRAAFLMSTPESKILIDCGEKPGNNDGYPYLYVPEIYPL-------NSLDAV 235
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
VITH HLDH +P + GY GP+Y T TR L+ ++ DY V+ + +V ++S
Sbjct: 236 VITHAHLDHCALVPLLYK-YGYEGPVYSTPATRDLSVMLQLDYLDVVANETSKV-PYSSK 293
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMT 181
+ + +K I ++ + D+++ + AGH+LG+A+ + VGD + +TGD+N
Sbjct: 294 EVQQYLKHSITLNYGSVTDIAPDVKLTYHNAGHILGSAIAHFHVGDGLYNIAFTGDFNYA 353
Query: 182 PDRHLGAARIDRLQLDLLITE 202
R G A +L+ + E
Sbjct: 354 KSRLFGPATSQFPRLEAVFME 374
>gi|448726634|ref|ZP_21709028.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus morrhuae DSM 1307]
gi|445793964|gb|EMA44528.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus morrhuae DSM 1307]
Length = 636
Score = 95.9 bits (237), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/199 (29%), Positives = 103/199 (51%), Gaps = 13/199 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ +++ RI+ DCG +D + Q P+ + + N+ID +V+
Sbjct: 187 LGCCREVGRASFILSTPETRILIDCGDKPGSDDAPYLQVPEANPL-------NSIDAVVL 239
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 240 THAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLQLDYLDVAA-KEGRSPPYDSAMV 297
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +G+ + ++GD +
Sbjct: 298 REAVKHTIPIEYGDVTDIAPDVKLTMHNAGHILGSAVSHFHIGEGHYNVAFSGDIHYDDT 357
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 358 RLFNGAVNDFPRVETLVME 376
>gi|448640769|ref|ZP_21677556.1| mRNA 3'-end processing factor-like protein [Haloarcula sinaiiensis
ATCC 33800]
gi|448651321|ref|ZP_21680390.1| mRNA 3'-end processing factor-like protein [Haloarcula californiae
ATCC 33799]
gi|445761294|gb|EMA12542.1| mRNA 3'-end processing factor-like protein [Haloarcula sinaiiensis
ATCC 33800]
gi|445770848|gb|EMA21906.1| mRNA 3'-end processing factor-like protein [Haloarcula californiae
ATCC 33799]
Length = 638
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG N + Y D + N ID +V+T
Sbjct: 186 TLGCCREVGRAAFILSTPDTRILIDCGNKPGANGEQPYLDIPEAFGAG--TNGIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P E GY+GPIY T PTR L ++ D+ D G + S+ +
Sbjct: 244 HAHLDHSALVPLLFEY-GYDGPIYCTEPTRDLMGLLTLDHLDTAADD-GRTPPYDSEMVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+++ + VGD + ++GD + R
Sbjct: 302 EAIKHTIPLEYGDVTDIAPDIKLTLHNAGHILGSSVCHFHVGDGLYNVAFSGDIHYDDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFDGAVNDFPRVETLVLE 379
>gi|224104292|ref|XP_002333964.1| predicted protein [Populus trichocarpa]
gi|222839280|gb|EEE77617.1| predicted protein [Populus trichocarpa]
Length = 169
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 20/141 (14%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK ++FDCG+H+AY+ P F I S ID +++TH
Sbjct: 30 LGAGNEVGRSCVYMSFKGKTVLFDCGIHLAYSGMAALPYFDEIDPST-----IDVLLVTH 84
Query: 68 FHLDHIGALPFFTEI----------CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEV 117
FHLDH +LP+F E + G ++MT+ T+A+ ++L DY KV + V
Sbjct: 85 FHLDHAASLPYFLEKDQSNMFTLYQTTFRGRVFMTHATKAIYKLLLTDYVKV---SKVSV 141
Query: 118 EQ--FTSDHIAECMKKVIAVD 136
E F I M K+ +D
Sbjct: 142 EDMLFDEKDINRSMDKIEKLD 162
>gi|448737127|ref|ZP_21719179.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus thailandensis JCM 13552]
gi|445804340|gb|EMA54597.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus thailandensis JCM 13552]
Length = 636
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/199 (29%), Positives = 103/199 (51%), Gaps = 13/199 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ +++ RI+ DCG +D + Q P+ + + N+ID +V+
Sbjct: 187 LGCCREVGRASFILSTPETRILIDCGDKPGSDDAPYLQVPEANPL-------NSIDAVVL 239
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 240 THAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLQLDYLDVAA-KEGRSPPYDSAMV 297
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +G+ + ++GD +
Sbjct: 298 REAVKHTIPIEYGDVTDIAPDVKLTMHNAGHILGSAVSHFHIGEGHYNVAFSGDIHYDDT 357
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 358 RLFNGAVNDFPRVETLVME 376
>gi|290559801|gb|EFD93125.1| beta-lactamase domain protein [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 629
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 61/198 (30%), Positives = 103/198 (52%), Gaps = 10/198 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LGA + VG+S V+V ++ D G+ ++ N P R+ +F+ + ++ +VIT
Sbjct: 181 LGAFRHVGRSAVLVQTPISSVLLDAGVDVS-NSREPVP---RVDAP-EFDISKLNAVVIT 235
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH G LP + GY GP+Y T PTR + ++ DY + G++ F D I
Sbjct: 236 HSHLDHCGFLPVLYKY-GYKGPVYSTAPTRDVMTLLHLDYINLASKTNGKL-LFDVDDIK 293
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
+K I + + + D++I + AGH+LG+AM + +G+ ++YTGD+ +
Sbjct: 294 NMLKHSITIPFHEVTDITPDIRITLHNAGHILGSAMIHLNIGNGFYNVLYTGDFKYENSK 353
Query: 185 HLGAARIDRLQLDLLITE 202
L A +++ LI E
Sbjct: 354 TLNRAETQFERVETLIME 371
>gi|167045029|gb|ABZ09693.1| putative Metallo-beta-lactamase superfamily protein [uncultured
marine crenarchaeote HF4000_APKG8G15]
Length = 643
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 6/202 (2%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
+ L LG +VG+SC+++T +++ DCG++ R+ F R+ + + +D
Sbjct: 186 VSLLTLGGFGQVGRSCMLLTTPDSKVLVDCGINPGARSPREA--FPRLDWANITLDELDA 243
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+VI H HLDH G LP + GY GPIY T PT + ++ D KV V +G +
Sbjct: 244 VVIGHAHLDHTGFLPVLLK-YGYKGPIYCTEPTLPMMNLIQLDAIKVAVA-QGRTPMYAE 301
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM--FYAKVGDSAMVYTGDYNM 180
+ + M++ I + + D+++ AGH+LG+A F+ G+ VYTGD
Sbjct: 302 RDVFQVMRQTITIPYGAVTDISPDIKLVLSNAGHILGSATCHFHIGNGEHNFVYTGDIKY 361
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
L +A + +++ L+ E
Sbjct: 362 GKSMLLESANTNYPRVETLLIE 383
>gi|399575311|ref|ZP_10769069.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halogranum salarium B-1]
gi|399239579|gb|EJN60505.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halogranum salarium B-1]
Length = 641
Score = 95.5 bits (236), Expect = 1e-17, Method: Composition-based stats.
Identities = 59/197 (29%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ V++ RI+ DCG D Y + N ID +V+TH
Sbjct: 187 LGCCREVGRASFVLSTPETRILIDCGDKPGAEDEVPYLHVPEALGAG--ANTIDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ + E
Sbjct: 245 AHLDHSALIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRTPPYESEMVRE 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 303 AIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYKDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 363 FNGAVNDFPRVETLVLE 379
>gi|257388099|ref|YP_003177872.1| beta-lactamase [Halomicrobium mukohataei DSM 12286]
gi|257170406|gb|ACV48165.1| beta-lactamase domain protein [Halomicrobium mukohataei DSM 12286]
Length = 640
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 98/198 (49%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P +ID +V+T
Sbjct: 186 TLGCCREVGRAAFILSTPDSRILIDCGDKPGAEG--EVPYLQAPEALAAGPQSIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 244 HAHLDHSALIPILFKY-GYDGPIYTTAPTRDLMGLLQLDYLDVAA-KEGRAPPYESQQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
+ +K I V+ + D+++ + AGH+LGAA+ + +GD + ++GD + T R
Sbjct: 302 DALKHTIPVEYGNVTDIAPDIKLTMHNAGHILGAAVTHFHIGDGHYNVAFSGDIHYTDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
L A D +++ L+ E
Sbjct: 362 LLDGAVNDFPRVETLVLE 379
>gi|448419881|ref|ZP_21580725.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halosarcina pallida JCM 14848]
gi|445674795|gb|ELZ27332.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halosarcina pallida JCM 14848]
Length = 640
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 58/199 (29%), Positives = 102/199 (51%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ +++ RI+ DCG +D + Q P+ N++D +V+
Sbjct: 187 LGCCREVGRASFILSTPETRILIDCGDKPGSDDVPYLQVPEALGSGA-----NSLDAVVL 241
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 242 THAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDVAA-KEGRTPPYESEMV 299
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD +
Sbjct: 300 REALKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 359
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 360 RLFNGAVNDFPRVETLVLE 378
>gi|322369848|ref|ZP_08044410.1| hypothetical protein ZOD2009_10175 [Haladaptatus paucihalophilus
DX253]
gi|320550184|gb|EFW91836.1| hypothetical protein ZOD2009_10175 [Haladaptatus paucihalophilus
DX253]
Length = 638
Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 105/199 (52%), Gaps = 9/199 (4%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA-IDCIVI 65
LG +EVG++ +++ RI+ DCG +D P + ++ ++ A ID +V+
Sbjct: 186 TLGCCREVGRASFILSTPETRILIDCGDKPGSDD---VP-YLQVEEALGAGAATIDAVVL 241
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH +P + GY+GPIY T PTR L ++ DY V + G V + S+ +
Sbjct: 242 THAHLDHSALIPLLFK-YGYDGPIYTTEPTRDLMGLLQLDYLDVAA-KEGRVPPYESEMV 299
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + T
Sbjct: 300 REALKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYTDT 359
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ LI E
Sbjct: 360 RLFNGAVNDFPRVETLILE 378
>gi|428304260|ref|YP_007141085.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428245795|gb|AFZ11575.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 782
Score = 95.1 bits (235), Expect = 1e-17, Method: Composition-based stats.
Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 11/196 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA + +G SC V I I+ D G ++ P F + + I+ITH
Sbjct: 201 LGAARSIGASCFRVLIGPYEIVLDAGTRPKGSN--PLPAFEHLKNP-------NLILITH 251
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
H DHIGALP F + P+ T TR +A +ML D KV + F + +
Sbjct: 252 AHQDHIGALPVFHQRFPAT-PMICTAGTREIAHVMLTDCLKVQQSNEDFEQLFDEIDLDQ 310
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
+ ++ + Q + L++R +AGH++GAA Y + GD +++YTGDYN T R
Sbjct: 311 TLFQLQTQPVGQDFEPLPGLKVRFIHAGHIVGAACVYIRYGDRSLLYTGDYNTTNSRTTD 370
Query: 188 AARI-DRLQLDLLITE 202
R+ D Q D+LITE
Sbjct: 371 GLRLADLPQADILITE 386
>gi|346466613|gb|AEO33151.1| hypothetical protein [Amblyomma maculatum]
Length = 618
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 83/143 (58%), Gaps = 2/143 (1%)
Query: 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
ID ++++HFH H GALP+F + G +MT+ T+A+ +L DY KV + E
Sbjct: 1 IDLLLVSHFHWYHCGALPWFLLKTTFKGRCFMTHATKAIYRWLLADYIKV-SNIGTEQML 59
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+T + M+K+ ++ + +V+ ++ Y AGHVLGAAMF ++ ++YTGD++
Sbjct: 60 YTEADLEASMEKIETINFHEEKEVN-GIRFWCYNAGHVLGAAMFMIEIAGVKVLYTGDFS 118
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
DRHL AA I + D+LI E
Sbjct: 119 RQEDRHLMAAEIPNIHPDVLIIE 141
>gi|289191606|ref|YP_003457547.1| RNA-metabolising metallo-beta-lactamase [Methanocaldococcus sp.
FS406-22]
gi|288938056|gb|ADC68811.1| RNA-metabolising metallo-beta-lactamase [Methanocaldococcus sp.
FS406-22]
Length = 421
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 23/194 (11%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G Q++G SCV V R++ DCGM PD I K D ID ++++H
Sbjct: 8 GGCQQIGMSCVEVETQKGRVLLDCGMS---------PDTGEIPKVDD--KVIDAVIVSHA 56
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GA+PF+ IY T+PT A +M +R D + + + I
Sbjct: 57 HLDHCGAIPFYK-----FKKIYCTHPT---ADLMFITWR----DTLNLTKAYKEEDIQYA 104
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M+ + ++ + Q+ ++++ + Y AGH+LG+A Y + ++YTGD N R L
Sbjct: 105 MENIECLNYYEERQITENIKFKFYNAGHILGSASIYLEADGKKILYTGDINEGVSRTLLP 164
Query: 189 ARIDRLQLDLLITE 202
A D ++D+LI E
Sbjct: 165 ADTDIDEIDVLIIE 178
>gi|312621851|ref|YP_004023464.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202318|gb|ADQ45645.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kronotskyensis 2002]
Length = 821
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 51/201 (25%), Positives = 105/201 (52%), Gaps = 10/201 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LG +EVG SCV++ GK I+ D G+ M + + P+ + + +D
Sbjct: 1 MEIVFLGGAKEVGASCVLIKAGGKNILIDSGIRMKED---KLPNLQLLREL----GGVDV 53
Query: 63 IVITHFHLDHIGALPFFTEICGY-NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
+I+H HLDHIG+LP Y N Y PT+ L ++L D +++ E+ +
Sbjct: 54 CLISHAHLDHIGSLPLIAR--EYPNIFFYTNQPTKDLIKVLLYDSLRIMEIAEDEIPIYA 111
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
++ + + + + T + + +++ + AGH+LGA+M + + + +++YTGD++
Sbjct: 112 EKNVEDLLDRTLTYGFNYTFEPIEGIKVTFFPAGHILGASMIFIQTQEGSILYTGDFSAD 171
Query: 182 PDRHLGAARIDRLQLDLLITE 202
+ A + +++ D++I E
Sbjct: 172 RQLTVDKASVPKIRPDVVICE 192
>gi|385803114|ref|YP_005839514.1| beta-lactamase [Haloquadratum walsbyi C23]
gi|339728606|emb|CCC39763.1| beta-lactamase domain protein [Haloquadratum walsbyi C23]
Length = 639
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 61/199 (30%), Positives = 101/199 (50%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ V++ RI+ DCG +D + Q P+ S ++D +V+
Sbjct: 187 LGCCREVGRASFVLSTPETRILIDCGDKPGSDDVPYLQAPEALGSGAS-----SVDAVVL 241
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH LP + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 242 THAHLDHSALLPLLFKY-GYDGPIYTTEPTRDLMGLLQLDYLDVAA-KEGRTPPYDSSMV 299
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD +
Sbjct: 300 RETIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYEDT 359
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ LI E
Sbjct: 360 RLFNGAVNDFPRVETLILE 378
>gi|269986876|gb|EEZ93153.1| beta-lactamase domain protein [Candidatus Parvarchaeum acidiphilum
ARMAN-4]
Length = 629
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 63/198 (31%), Positives = 102/198 (51%), Gaps = 10/198 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LGA + VG+S V+V I+ D G+ ++ N P R+ +F+ + + +VIT
Sbjct: 181 LGAFRHVGRSAVLVQTPISSILLDAGVDVS-NPKEPVP---RVDAP-EFDISKLAAVVIT 235
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH G LP + GYNGP+Y T PTR + ++ DY L R F D +
Sbjct: 236 HSHLDHCGFLPALYKY-GYNGPVYSTAPTRDVMTLLHLDYIN-LASRTNSKLLFDVDDVK 293
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
+ +K I + + + D++I + AGH+LG+AM + +G+ ++YTGD+ +
Sbjct: 294 KMLKHSITLPFHEVTDITPDIRITLHNAGHILGSAMIHLNIGNGFYNVLYTGDFKYDNSK 353
Query: 185 HLGAARIDRLQLDLLITE 202
L A +++ LI E
Sbjct: 354 TLNRAETQFERVETLIME 371
>gi|255513556|gb|EET89822.1| beta-lactamase domain protein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 419
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 14/176 (7%)
Query: 27 RIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYN 86
RI+ D G+ + D Q+P + + N ID + I+H HLDH G +P Y
Sbjct: 8 RILLDAGVKLGSED--QFPKIT----DEELGN-IDAVFISHAHLDHCGYVPHIYS-AEYR 59
Query: 87 GPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKD 146
G +Y T PT L +++ DY ++ E + ++E +K AV+ K+ + + KD
Sbjct: 60 GEVYATKPTLELMQVLISDYMRI-----SEPSNVSKKGLSEMLKHQRAVEYKREISI-KD 113
Query: 147 LQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
L+I AGH+LG+A+ G + ++YTGD N+ + L A + L D+LITE
Sbjct: 114 LKITFIPAGHILGSALIRVTDGKNTLIYTGDINLAKTKLLNGADLKNLSGDVLITE 169
>gi|341581963|ref|YP_004762455.1| cleavage and polyadenylation specificity factor subunit-like
protein [Thermococcus sp. 4557]
gi|340809621|gb|AEK72778.1| cleavage and polyadenylation specificity factor subunit-like
protein [Thermococcus sp. 4557]
Length = 651
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 60/205 (29%), Positives = 106/205 (51%), Gaps = 16/205 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMA-YND------HRQYPDFSRISKSCDFNNAI 60
LG +EVG+S ++V N ++ D G+++A D H + P+F + + +
Sbjct: 194 LGGFREVGRSALLVQTNESYVLVDFGVNIAALRDPKKAFPHFEAPEFRYVLDA----GLL 249
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ- 119
D I+ITH HLDH G LP+ ++GPIY T PTR L ++ +D+ + + + VE
Sbjct: 250 DAIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMVLLQQDF--IEIQKMNGVEPL 307
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGD 177
+ I E +K I +D + + D+++ + AGH+LG+++ + +G+ + TGD
Sbjct: 308 YRPRDIKEVIKHTITLDYGEVRDIAPDMRLTLHNAGHILGSSIVHLHIGNGLHNIAITGD 367
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
+ P R A +L+ L+ E
Sbjct: 368 FKFIPTRLFEPAVSRFPRLETLVME 392
>gi|374253826|ref|NP_001243391.1| integrator complex subunit 11 isoform 4 [Homo sapiens]
Length = 502
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 52/60 (86%)
Query: 143 VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
V+ +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 46 VNDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 105
>gi|426327398|ref|XP_004024505.1| PREDICTED: integrator complex subunit 11 isoform 5 [Gorilla gorilla
gorilla]
Length = 502
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 52/60 (86%)
Query: 143 VDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
V+ +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 46 VNDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 105
>gi|355571913|ref|ZP_09043121.1| KH-domain/beta-lactamase-domain protein [Methanolinea tarda NOBI-1]
gi|354825009|gb|EHF09244.1| KH-domain/beta-lactamase-domain protein [Methanolinea tarda NOBI-1]
Length = 629
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 107/205 (52%), Gaps = 14/205 (6%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGM---HMAYNDHRQYPDFSRISKSCDFNNA 59
+ +LG +EVG++ +++ R++ DCG + A + P+ +S+
Sbjct: 179 VRVTMLGCCREVGRAAFLLSTPESRVLIDCGEKPDNSASTPYLYVPEIHPLSQ------- 231
Query: 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
+D +V+TH HLDH +P + GY+GP+Y T PTR L+ ++ DY V V +
Sbjct: 232 LDAVVLTHAHLDHCALVPLLFK-YGYDGPVYSTPPTRDLSAMLQLDYLDV-VSKEDRKIP 289
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGD 177
++S+ + +K I ++ + D+++ + AGH+LG+A+ + +GD + +TGD
Sbjct: 290 YSSNEVKSYIKHSITLNYGSVTDIAPDIKLTFHNAGHILGSAIAHFHIGDGLYNIAFTGD 349
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
+N + R A + +L+ LI E
Sbjct: 350 FNFSKSRLFNPATCNFPRLEALIME 374
>gi|302872375|ref|YP_003841011.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
obsidiansis OB47]
gi|302575234|gb|ADL43025.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
obsidiansis OB47]
Length = 821
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 50/203 (24%), Positives = 104/203 (51%), Gaps = 14/203 (6%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LG +EVG SCV++ GK I+ D G+ M + + P+ + + +D
Sbjct: 1 MEIVFLGGAKEVGASCVLIKAGGKNILIDSGIRMKED---KLPNLQVLREL----GGVDV 53
Query: 63 IVITHFHLDHIGALPFFTEICGYNGP---IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
+I+H HLDHIG+LP P Y PT+ L ++L D +++ E+
Sbjct: 54 CLISHAHLDHIGSLPLIAR----EYPHIFFYTNQPTKDLIKVLLYDSLRIMEIAEDEIPI 109
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ ++ + + + + T + + +++ + AGH+LGA+M + + + +++YTGD++
Sbjct: 110 YAEKNVEDLLDRTLTYGFNYTFEPVEGIRVTFFPAGHILGASMIFIQTQEGSILYTGDFS 169
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
+ A + +++ D++I E
Sbjct: 170 ADKQLTVDKASVPKIRPDIVICE 192
>gi|448437483|ref|ZP_21587486.1| beta-lactamase [Halorubrum tebenquichense DSM 14210]
gi|445680702|gb|ELZ33144.1| beta-lactamase [Halorubrum tebenquichense DSM 14210]
Length = 497
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/202 (30%), Positives = 98/202 (48%), Gaps = 8/202 (3%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
+ LG +EVG++ +++ RI+ DCG Y + D +D
Sbjct: 42 VRVTTLGCCREVGRASFILSTPESRILVDCGDKPGAEGEVPYLQIPEANPIAD----LDA 97
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+V+TH HLDH LP + GY+GP+Y T TR L ++ DY V + G + S
Sbjct: 98 VVLTHAHLDHSALLPLLFKY-GYDGPVYTTQATRDLMGLLQLDYLDVAA-KEGRTPPYES 155
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNM 180
+ E +K I VD + D+++ + AGH+LG+A+ + VGD +V++GD +
Sbjct: 156 AMVREELKHTITVDYGNVTDIAPDIKLTLHNAGHILGSAVAHFHVGDGFHNVVFSGDIHH 215
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
T R A D +++ LI E
Sbjct: 216 TDTRLFNGASNDFPRVESLIME 237
>gi|440301414|gb|ELP93800.1| cleavage and polyadenylation specificity factor, putative
[Entamoeba invadens IP1]
Length = 469
Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 14/196 (7%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G GQ VG SC VV ++ DCG + +D DF +++ I C IT
Sbjct: 5 VFGGGQSVGCSCFVVEGREDAVVLDCGYNHVRSDIGI--DFEKMNL---LAPKIRCCCIT 59
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H+H+DH+G LP+ + PI+M PT ++ P++L D I
Sbjct: 60 HYHVDHVGMLPWLCKFLSI--PIFMAQPTLSVLPMILSD-------THSSSSFILPSDIE 110
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+C+ + + Q++++ K++ +R +YAGH LGA F +VYTGD + +
Sbjct: 111 KCVNQCSVIQPGQSIRITKNVSLRCFYAGHALGAVCFEILFDGKTIVYTGDIDNQESFLI 170
Query: 187 GAARIDRLQLDLLITE 202
+A I ++ LI+E
Sbjct: 171 RSAEITPHSINYLISE 186
>gi|390960706|ref|YP_006424540.1| hypothetical protein CL1_0538 [Thermococcus sp. CL1]
gi|390519014|gb|AFL94746.1| hypothetical protein containing KH domain /beta-lactamase-domain
protein [Thermococcus sp. CL1]
Length = 648
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 59/205 (28%), Positives = 104/205 (50%), Gaps = 16/205 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND-------HRQYPDFSRISKSCDFNNAI 60
LG +EVG+S ++V N ++ D G+++A H P+F + + +
Sbjct: 191 LGGFREVGRSALLVQTNESYVLVDFGVNIAAMKDPKKAFPHFDAPEFRYVLDA----GLL 246
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ- 119
D I+ITH HLDH G LP+ ++GPIY T PTR L ++ +D+ + + + VE
Sbjct: 247 DAIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMVLLQQDF--IEIQKMNGVEPL 304
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGD 177
+ I E +K I +D + + D+++ + AGH+LG+++ + +G+ + TGD
Sbjct: 305 YRPRDIKEVIKHTITLDYGEVRDIAPDMRLTLHNAGHILGSSIVHLHIGNGLHNIAITGD 364
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
+ P R A +L+ L+ E
Sbjct: 365 FKFIPTRLFEPAVSRFPRLETLVME 389
>gi|448671829|ref|ZP_21687634.1| mRNA 3'-end processing factor-like protein [Haloarcula amylolytica
JCM 13557]
gi|445764965|gb|EMA16108.1| mRNA 3'-end processing factor-like protein [Haloarcula amylolytica
JCM 13557]
Length = 640
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ RI+ DCG + P N+ID +V+TH
Sbjct: 187 LGCCREVGRASFILSTPESRILIDCGDKPGAEG--EVPYLQAPEALAAGPNSIDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S + +
Sbjct: 245 AHLDHSALIPILFKY-GYDGPIYTTAPTRDLMGLLQLDYLDV-ASKEGRTPPYESQQVRD 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+A+ + +G+ + ++GD + R
Sbjct: 303 ALKHTIPLEFGNVTDIAPDIKLTMHNAGHILGSAVCHFHIGEGRYNVAFSGDIHYKDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
L A D +++ L+ E
Sbjct: 363 LDGAVNDFPRVETLVLE 379
>gi|110667673|ref|YP_657484.1| mRNA 3'-end processing factor-like protein [Haloquadratum walsbyi
DSM 16790]
gi|109625420|emb|CAJ51844.1| beta-lactamase domain protein [Haloquadratum walsbyi DSM 16790]
Length = 639
Score = 94.4 bits (233), Expect = 2e-17, Method: Composition-based stats.
Identities = 60/199 (30%), Positives = 101/199 (50%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ V++ RI+ DCG +D + Q P+ S ++D +V+
Sbjct: 187 LGCCREVGRASFVLSTPETRILIDCGDKPGSDDVPYLQAPEALGSGAS-----SVDAVVL 241
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH LP + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 242 THAHLDHSALLPLLFKY-GYDGPIYTTEPTRDLMGLLQLDYLDVAA-KEGRTPPYDSSMV 299
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD +
Sbjct: 300 RETIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYEDT 359
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 360 RLFNGAVNDFPRVETLVLE 378
>gi|312135668|ref|YP_004003006.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
owensensis OL]
gi|311775719|gb|ADQ05206.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
owensensis OL]
Length = 821
Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 50/203 (24%), Positives = 104/203 (51%), Gaps = 14/203 (6%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LG +EVG SCV++ GK I+ D G+ M + + P+ + + +D
Sbjct: 1 MEIVFLGGAKEVGASCVLIKAGGKNILIDSGIRMKED---KLPNLQLLREL----GGVDV 53
Query: 63 IVITHFHLDHIGALPFFTEICGYNGP---IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
+I+H HLDHIG+LP P Y PT+ L ++L D +++ E+
Sbjct: 54 CLISHAHLDHIGSLPLIAR----EYPHIFFYTNQPTKDLIKVLLYDSLRIMEIAEDEIPI 109
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ ++ + + + + T + + +++ + AGH+LGA+M + + + +++YTGD++
Sbjct: 110 YAEKNVEDLLDRTLTYGFNYTFEPVEGIRVTFFPAGHILGASMIFIQTQEGSILYTGDFS 169
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
+ A + +++ D++I E
Sbjct: 170 ADKQLTVDRASVPKIRPDIVICE 192
>gi|313127082|ref|YP_004037352.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halogeometricum borinquense DSM 11551]
gi|448288450|ref|ZP_21479649.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halogeometricum borinquense DSM 11551]
gi|312293447|gb|ADQ67907.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Halogeometricum borinquense DSM 11551]
gi|445569601|gb|ELY24173.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halogeometricum borinquense DSM 11551]
Length = 640
Score = 94.4 bits (233), Expect = 3e-17, Method: Composition-based stats.
Identities = 57/199 (28%), Positives = 102/199 (51%), Gaps = 11/199 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ +++ RI+ DCG +D + Q P+ N++D +++
Sbjct: 187 LGCCREVGRASFILSTPETRILIDCGDKPGSDDVPYLQVPEALGSGA-----NSLDAVIL 241
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 242 THAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDVAA-KEGRTPPYESEMV 299
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD +
Sbjct: 300 REAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDT 359
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 360 RLFNGAVNDFPRVETLVLE 378
>gi|409095356|ref|ZP_11215380.1| RNA-metabolising metallo-beta-lactamase, beta-CASP family protein
[Thermococcus zilligii AN1]
Length = 648
Score = 94.0 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 59/201 (29%), Positives = 103/201 (51%), Gaps = 8/201 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAY--NDHRQYPDFSRISKSCDFNNAI-DCIV 64
LG +EVG+S ++V + ++ D G+++A + + YP F + + D I+
Sbjct: 191 LGGFREVGRSALLVQTDESYVLVDFGVNIASLKDPTKAYPHFDAPEFRYVLDEGLLDAII 250
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-FTSD 123
ITH HLDH G LP+ ++GPIY T PTR L ++ +D+ + + VE +
Sbjct: 251 ITHAHLDHSGMLPYLFRYNLFDGPIYTTPPTRDLMTLLQQDF--IEIQHMNGVEPLYRPR 308
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMT 181
I + +K I +D + + D+++ + AGH+LG+A+ + +G+ + TGD+
Sbjct: 309 DIKDVIKHTITLDYGEVRDIAPDIRLTFHNAGHILGSAIVHLHIGNGLHNIAVTGDFKFI 368
Query: 182 PDRHLGAARIDRLQLDLLITE 202
P R A +L+ LI E
Sbjct: 369 PTRLFEPATSKFPRLETLIME 389
>gi|449518964|ref|XP_004166505.1| PREDICTED: LOW QUALITY PROTEIN: cleavage and polyadenylation
specificity factor subunit 3-II-like, partial [Cucumis
sativus]
Length = 472
Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/46 (93%), Positives = 46/46 (100%)
Query: 157 VLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
VLGAAMFYAKVGD+AMVYTGDYNMTPDRHLGAA+IDR+QLDLLITE
Sbjct: 1 VLGAAMFYAKVGDAAMVYTGDYNMTPDRHLGAAQIDRMQLDLLITE 46
>gi|325969789|ref|YP_004245981.1| beta-lactamase [Vulcanisaeta moutnovskia 768-28]
gi|323708992|gb|ADY02479.1| beta-lactamase domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 650
Score = 94.0 bits (232), Expect = 3e-17, Method: Composition-based stats.
Identities = 60/198 (30%), Positives = 102/198 (51%), Gaps = 11/198 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA EVG+S +++ I+ DCG+ + + + P + +D IVITH
Sbjct: 197 LGAQMEVGRSAILIRTKESSILLDCGVKPS-SSGDEAPLLDELDLD-----TLDAIVITH 250
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
H+DHIG +P+ + GY GP+YMT PT+ L ++L DY + + G V ++ +A+
Sbjct: 251 AHMDHIGFVPYLFKY-GYKGPVYMTEPTKYLMEVLLTDYIE-QAESEGRVPPYSRQDLAQ 308
Query: 128 CMKKVIAVDL-KQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
+ I ++ + D ++ + AGH +G+A+ + +G+ ++YTGD P R
Sbjct: 309 ALYHTITLNYADHPTDISPDTKLMLFDAGHEVGSAVVHLHIGNGLYNIIYTGDMKYGPTR 368
Query: 185 HLGAARIDRLQLDLLITE 202
L A + +LLI E
Sbjct: 369 LLNPAHNKFKRAELLIME 386
>gi|222529916|ref|YP_002573798.1| beta-lactamase domain-containing protein [Caldicellulosiruptor
bescii DSM 6725]
gi|222456763|gb|ACM61025.1| beta-lactamase domain protein [Caldicellulosiruptor bescii DSM
6725]
Length = 821
Score = 94.0 bits (232), Expect = 4e-17, Method: Composition-based stats.
Identities = 50/203 (24%), Positives = 104/203 (51%), Gaps = 14/203 (6%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LG +EVG SCV++ GK I+ D G+ M + + P+ + + +D
Sbjct: 1 MEIVFLGGAKEVGASCVLIKAGGKNILIDSGIRMKED---KLPNLQLLREL----GGVDV 53
Query: 63 IVITHFHLDHIGALPFFTEICGYNGP---IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
+I+H HLDHIG+LP P Y PT+ L ++L D +++ E+
Sbjct: 54 CLISHAHLDHIGSLPLIAR----EYPHIFFYANQPTKDLIKVLLYDSLRIMEIAEDEIPI 109
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ ++ + + + + T + + +++ + AGH+LGA+M + + + +++YTGD++
Sbjct: 110 YAEKNVEDLLDRTLTYGFNYTFEPIEGIKVTFFPAGHILGASMIFIQTQEGSILYTGDFS 169
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
+ A + +++ D++I E
Sbjct: 170 ADRQLTVDKASVPKIRPDVVICE 192
>gi|344996811|ref|YP_004799154.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
lactoaceticus 6A]
gi|343965030|gb|AEM74177.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
lactoaceticus 6A]
Length = 822
Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 51/203 (25%), Positives = 103/203 (50%), Gaps = 14/203 (6%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LG +EVG SCV++ K I+ D GM M + + P+ + + +D
Sbjct: 1 MEIVFLGGAKEVGASCVLIKACNKNILIDSGMRMKED---KLPNLQLLREL----GGVDV 53
Query: 63 IVITHFHLDHIGALPFFTEICGYNGP---IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
+I+H HLDHIG+LP P Y PT+ L ++L D +++ E+
Sbjct: 54 CLISHAHLDHIGSLPLIAR----EYPHIFFYANQPTKDLIKVLLYDSLRIMEIAEDEIPI 109
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ ++ + + + + T + + +++ + AGH+LGA+M + K + +++YTGD++
Sbjct: 110 YAEKNVEDLLDRTLTYGFNYTFEPIEGIKVTFFPAGHILGASMIFIKTQEGSILYTGDFS 169
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
+ A + +++ D++I E
Sbjct: 170 ADRQLTVDKASVPKIRPDVVICE 192
>gi|448685512|ref|ZP_21693504.1| mRNA 3'-end processing factor-like protein [Haloarcula japonica DSM
6131]
gi|445782123|gb|EMA32974.1| mRNA 3'-end processing factor-like protein [Haloarcula japonica DSM
6131]
Length = 640
Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ RI+ DCG + P N++D +V+TH
Sbjct: 187 LGCCREVGRAAFILSTPESRILIDCGDKPGAEG--EVPYLQAPEALAAGPNSLDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S + +
Sbjct: 245 AHLDHSALIPILFKY-GYDGPIYTTAPTRDLMGLLQLDYLDV-ASKEGRTPPYESQQVRD 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+A+ + +G+ + ++GD + R
Sbjct: 303 ALKHTIPLEFGNVTDIAPDIKLTMHNAGHILGSAVCHFHIGEGRYNVAFSGDIHYKDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
L A D +++ L+ E
Sbjct: 363 LDGAVNDFPRVETLVLE 379
>gi|448681732|ref|ZP_21691823.1| mRNA 3'-end processing factor-like protein [Haloarcula
argentinensis DSM 12282]
gi|445767602|gb|EMA18705.1| mRNA 3'-end processing factor-like protein [Haloarcula
argentinensis DSM 12282]
Length = 640
Score = 93.6 bits (231), Expect = 4e-17, Method: Composition-based stats.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ RI+ DCG + P N++D +V+TH
Sbjct: 187 LGCCREVGRAAFILSTPESRILIDCGDKPGAEG--EVPYLQAPEALAAGPNSLDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S + +
Sbjct: 245 AHLDHSALIPILFKY-GYDGPIYTTAPTRDLMGLLQLDYLDV-ASKEGRTPPYESQQVRD 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+A+ + +G+ + ++GD + R
Sbjct: 303 ALKHTIPLEFGNVTDIAPDIKLTMHNAGHILGSAVCHFHIGEGRYNVAFSGDIHYKDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
L A D +++ L+ E
Sbjct: 363 LDGAVNDFPRVETLVLE 379
>gi|448636727|ref|ZP_21675175.1| mRNA 3'-end processing factor-like protein [Haloarcula sinaiiensis
ATCC 33800]
gi|445765033|gb|EMA16172.1| mRNA 3'-end processing factor-like protein [Haloarcula sinaiiensis
ATCC 33800]
Length = 640
Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ RI+ DCG + P N++D +V+TH
Sbjct: 187 LGCCREVGRAAFILSTPESRILIDCGDKPGAEG--EVPYLQAPEALAAGPNSLDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S + +
Sbjct: 245 AHLDHSALIPILFKY-GYDGPIYTTAPTRDLMGLLQLDYLDV-ASKEGRTPPYESQQVRD 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+A+ + +G+ + ++GD + R
Sbjct: 303 ALKHTIPLEFGNVTDIAPDIKLTMHNAGHILGSAVCHFHIGEGRYNVAFSGDIHYKDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
L A D +++ L+ E
Sbjct: 363 LDGAVNDFPRVETLVLE 379
>gi|55378101|ref|YP_135951.1| mRNA 3'-end processing factor-like protein [Haloarcula marismortui
ATCC 43049]
gi|448648471|ref|ZP_21679602.1| mRNA 3'-end processing factor-like protein [Haloarcula californiae
ATCC 33799]
gi|55230826|gb|AAV46245.1| mRNA 3'-end processing factor-like [Haloarcula marismortui ATCC
43049]
gi|445775572|gb|EMA26582.1| mRNA 3'-end processing factor-like protein [Haloarcula californiae
ATCC 33799]
Length = 640
Score = 93.6 bits (231), Expect = 5e-17, Method: Composition-based stats.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ RI+ DCG + P N++D +V+TH
Sbjct: 187 LGCCREVGRAAFILSTPESRILIDCGDKPGAEG--EVPYLQAPEALAAGPNSLDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S + +
Sbjct: 245 AHLDHSALIPILFKY-GYDGPIYTTAPTRDLMGLLQLDYLDV-ASKEGRTPPYESQQVRD 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+A+ + +G+ + ++GD + R
Sbjct: 303 ALKHTIPLEFGNVTDIAPDIKLTMHNAGHILGSAVCHFHIGEGRYNVAFSGDIHYKDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
L A D +++ L+ E
Sbjct: 363 LDGAVNDFPRVETLVLE 379
>gi|212223311|ref|YP_002306547.1| cleavage and polyadenylation specficity factor subunit-like protein
[Thermococcus onnurineus NA1]
gi|212008268|gb|ACJ15650.1| cleavage and polyadenylation specficity factor subunit-like protein
[Thermococcus onnurineus NA1]
Length = 648
Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 16/205 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMA-YND------HRQYPDFSRISKSCDFNNAI 60
LG +EVG+S ++V N ++ D G+++A D H P+F + + +
Sbjct: 191 LGGFREVGRSALLVQTNESYVLVDFGVNIAALRDPKKAFPHFDAPEFRYVLDA----GLL 246
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ- 119
D I+ITH HLDH G LP+ ++GPIY T PTR L ++ +D+ + + + VE
Sbjct: 247 DAIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMVLLQQDF--IEIQQMNGVEPL 304
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGD 177
+ I E +K I +D + + D+++ + AGH+LG+++ + +G+ + TGD
Sbjct: 305 YRPRDIKEVIKHTITLDYGEVRDIAPDMRLTLHNAGHILGSSIVHLHIGNGLHNIAITGD 364
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
+ P R A +L+ L+ E
Sbjct: 365 FKFIPTRLFEPAVSRFPRLETLVME 389
>gi|57641363|ref|YP_183841.1| cleavage and polyadenylation specficity factor subunit-like protein
[Thermococcus kodakarensis KOD1]
gi|57159687|dbj|BAD85617.1| cleavage and polyadenylation specficity factor subunit homolog
[Thermococcus kodakarensis KOD1]
Length = 648
Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 58/201 (28%), Positives = 103/201 (51%), Gaps = 8/201 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAY--NDHRQYPDFSRISKSCDFNNAI-DCIV 64
LG +EVG+S ++V + ++ D G+++A + + YP F + + D I+
Sbjct: 191 LGGFREVGRSALLVQTDESYVLVDFGVNIAALKDPTKAYPHFDAPEFRYVLDEGLLDAII 250
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-FTSD 123
ITH HLDH G LP+ ++GPIY T PTR L ++ +D+ + + VE +
Sbjct: 251 ITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDF--IEIQHMNGVEPLYRPK 308
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMT 181
I E +K I +D + + D+++ + AGH+LG+++ + +G+ + TGD+
Sbjct: 309 DIKEVIKHTITLDYGEVRDIAPDIRLTLHNAGHILGSSIVHLHIGNGLHNIAITGDFKFI 368
Query: 182 PDRHLGAARIDRLQLDLLITE 202
P R A +L+ L+ E
Sbjct: 369 PTRLFEPAVSRFPRLETLVME 389
>gi|344212168|ref|YP_004796488.1| mRNA 3'-end processing factor-like protein [Haloarcula hispanica
ATCC 33960]
gi|343783523|gb|AEM57500.1| mRNA 3'-end processing factor-like protein [Haloarcula hispanica
ATCC 33960]
Length = 640
Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ RI+ DCG + P N++D +V+TH
Sbjct: 187 LGCCREVGRAAFILSTPESRILIDCGDKPGAEG--EVPYLQAPEALAAGPNSLDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S + +
Sbjct: 245 AHLDHSALIPILFKY-GYDGPIYTTAPTRDLMGLLQLDYLDV-ASKEGRTPPYESQQVRD 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+A+ + +G+ + ++GD + R
Sbjct: 303 ALKHTIPLEFGNVTDIAPDIKLTMHNAGHILGSAVCHFHIGEGRYNVAFSGDIHYKDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
L A D +++ L+ E
Sbjct: 363 LDGAVNDFPRVETLVLE 379
>gi|448629175|ref|ZP_21672574.1| mRNA 3'-end processing factor-like protein [Haloarcula vallismortis
ATCC 29715]
gi|445757741|gb|EMA09082.1| mRNA 3'-end processing factor-like protein [Haloarcula vallismortis
ATCC 29715]
Length = 640
Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 55/197 (27%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ RI+ DCG + P N++D +V+TH
Sbjct: 187 LGCCREVGRAAFILSTPESRILIDCGDKPGAEG--EVPYLQAPEALAAGPNSLDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S + +
Sbjct: 245 AHLDHSALIPILFKY-GYDGPIYTTAPTRDLMGLLQLDYLDV-ASKEGRTPPYESQQVRD 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+A+ + +G+ + ++GD + R
Sbjct: 303 ALKHTIPLEFGNVTDIAPDIKLTMHNAGHILGSAVCHFHIGEGRYNVAFSGDIHYKDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
L A D +++ L+ E
Sbjct: 363 LDGAVNDFPRVETLVLE 379
>gi|47213099|emb|CAF89519.1| unnamed protein product [Tetraodon nigroviridis]
Length = 810
Score = 93.2 bits (230), Expect = 6e-17, Method: Composition-based stats.
Identities = 43/102 (42%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 14 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV 109
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV
Sbjct: 69 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV 110
>gi|409723553|ref|ZP_11270747.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus hamelinensis 100A6]
gi|448722591|ref|ZP_21705125.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus hamelinensis 100A6]
gi|445789316|gb|EMA40005.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus hamelinensis 100A6]
Length = 636
Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 103/200 (51%), Gaps = 13/200 (6%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIV 64
LG +EVG++ +++ RI+ DCG +D + Q P+ + + N++D +V
Sbjct: 186 TLGCCREVGRASFILSTPETRILIDCGDKPGSDDTPYLQIPEANPL-------NSLDAVV 238
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
+TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S
Sbjct: 239 LTHAHLDHSALIPLLFK-YGYDGPIYTTEPTRDLMGLLQLDYLDVAA-KEGRSPPYESAM 296
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTP 182
+ E +K I V+ + D+++ + AGH+LG+++ + +GD + ++GD +
Sbjct: 297 VREAVKHTIPVEYGDVTDIAPDVKLTLHNAGHILGSSVAHFHIGDGYYNVAFSGDIHYDD 356
Query: 183 DRHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 357 TRLFNGAVNDFPRVETLVME 376
>gi|448301186|ref|ZP_21491181.1| beta-lactamase [Natronorubrum tibetense GA33]
gi|445584700|gb|ELY39015.1| beta-lactamase [Natronorubrum tibetense GA33]
Length = 648
Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 14/192 (7%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQY---PDFSRISKSCDFNNA 59
+ LG +EVG++ V+ +I+ DCG Y P+ +++
Sbjct: 196 VRVTTLGCCREVGRASFVLHTPNTKILIDCGDKPGAEGEVPYLHVPEAMPLTE------- 248
Query: 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
+D +V+TH HLDH LP + GY+GPIY T PTR L ++ DY V + G
Sbjct: 249 LDAVVLTHAHLDHSALLPLLFKY-GYDGPIYTTEPTRDLMGLLQLDYLDV-ASKEGRTPP 306
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGD 177
+ S+ + + +K I VD + D+++ + AGH+LG+A + VG+ +V++GD
Sbjct: 307 YASEQVRQAIKHTIPVDYGAVTDIAPDIKLTMHNAGHILGSATAHFHVGNGFHNIVFSGD 366
Query: 178 YNMTPDRHLGAA 189
+ P R A
Sbjct: 367 VHYEPTRLFNGA 378
>gi|307353378|ref|YP_003894429.1| KH-domain/beta-lactamase-domain-containing protein [Methanoplanus
petrolearius DSM 11571]
gi|307156611|gb|ADN35991.1| KH-domain/beta-lactamase-domain protein [Methanoplanus petrolearius
DSM 11571]
Length = 629
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 102/205 (49%), Gaps = 14/205 (6%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQY---PDFSRISKSCDFNNA 59
+ LG +EVG++ +++ +I+ DCG + Y P+ + N
Sbjct: 179 VRVTTLGCCREVGRAAFLLSTPESKILIDCGEKPGSTEGVPYLYVPEIYPL-------NT 231
Query: 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
+D +V+TH HLDH +P G+ GP+Y T TR LA ++ DY +V+ + +
Sbjct: 232 LDAVVLTHAHLDHCALVPLLYR-YGFEGPVYSTPATRDLAVMLQLDYLEVVSNEANQA-P 289
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGD 177
+TS + E +KK I ++ + D+++ + AGH+LG+A+ + VGD + ++GD
Sbjct: 290 YTSKEVQEYLKKSIVLNYGSVTDIAPDIKLTYHNAGHILGSAIAHFHVGDGLYNIAFSGD 349
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
+N R G A +L+ + E
Sbjct: 350 FNYGKTRLFGPATSQFPRLETIFVE 374
>gi|258514362|ref|YP_003190584.1| beta-lactamase domain-containing protein [Desulfotomaculum
acetoxidans DSM 771]
gi|257778067|gb|ACV61961.1| beta-lactamase domain protein [Desulfotomaculum acetoxidans DSM
771]
Length = 522
Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 99/195 (50%), Gaps = 27/195 (13%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYN--DHRQYPDFSRISKSCDFNNAIDCIVI 65
LGA Q V SC +++++GK IM DCGM R Y DF KS + C+++
Sbjct: 6 LGAAQTVTGSCHLLSVDGKNIMIDCGMFQGTKAIKERNYQDFLIPPKS------LACVIL 59
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDY---RKVLVDRRGEVEQFTS 122
TH H+DH G LP + GY GP+Y+T T L +ML D ++ V+ + +
Sbjct: 60 THAHIDHSGLLPKLVK-QGYKGPVYVTEATGDLLEVMLPDSGHIQETEVEAKNRKAKRAG 118
Query: 123 DHIAECMKKV----IAVDLKQTVQVDKDLQI------RAYYAGHVLGAAM---FYAKVGD 169
+ E + V A++L Q V+ D++ Q+ R AGH+LG+AM + + GD
Sbjct: 119 KKLIEPIYTVDDAYAALELMQKVKYDEEFQVADNITARFQEAGHILGSAMLELWAEETGD 178
Query: 170 SA-MVYTGDYNMTPD 183
A V++GD PD
Sbjct: 179 KAKFVFSGDLG-NPD 192
>gi|409039929|gb|EKM49418.1| hypothetical protein PHACADRAFT_167242 [Phanerochaete carnosa
HHB-10118-sp]
Length = 702
Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 89/193 (46%), Gaps = 30/193 (15%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC V+ G+ I+ D G+ V
Sbjct: 12 LLGAGQEVGRSCCVLQYRGRAIVCDTGV----------------------------PVHP 43
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
FHL+H AL + E G IYMT+PT+AL M++D+ V +D F+ ++
Sbjct: 44 VFHLNHAAALTYIMEKVDGKGKIYMTHPTKALHKFMMQDF--VRMDSSSSDALFSPMELS 101
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ +I V Q + + Y AGHVLGA MF + ++YTGDY+ D+HL
Sbjct: 102 VSLASIIPVSAHQVISPCPGVMFTLYCAGHVLGACMFLIDIAGLKILYTGDYSREEDQHL 161
Query: 187 GAARIDRLQLDLL 199
A + + D L
Sbjct: 162 VKAEVPPVHPDGL 174
>gi|428307781|ref|YP_007144606.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428249316|gb|AFZ15096.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 894
Score = 92.4 bits (228), Expect = 8e-17, Method: Composition-based stats.
Identities = 68/202 (33%), Positives = 98/202 (48%), Gaps = 23/202 (11%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA + +G SC V I I+ D G ++ P F + + I+ITH
Sbjct: 315 LGAARSIGASCFRVLIGPYEIVLDAGTRPKGSN--PLPAFEHLKNP-------NLILITH 365
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
H DHIGALP F + P+ T TR +A +ML D KV + F + +
Sbjct: 366 AHQDHIGALPVFHQRFPAT-PMICTAGTREIAHVMLTDCLKVQQSNEDFEQLFDEIDLDQ 424
Query: 128 CMKKVIAVDLKQTVQVDKD------LQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+ ++ QT V KD L++R +AGH++GAA Y + G+ +++YTGDYN T
Sbjct: 425 TLFQL------QTQPVGKDFEPLPGLKVRFIHAGHIVGAACVYIRYGERSLLYTGDYNTT 478
Query: 182 PDRHLGAARI-DRLQLDLLITE 202
R R+ D Q D+LITE
Sbjct: 479 NSRTTDGLRLADLPQADILITE 500
>gi|448733382|ref|ZP_21715627.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus salifodinae DSM 8989]
gi|445803116|gb|EMA53416.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus salifodinae DSM 8989]
Length = 635
Score = 92.4 bits (228), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 103/200 (51%), Gaps = 13/200 (6%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIV 64
LG +EVG++ +++ RI+ DCG +D + Q P+ + + N++D +V
Sbjct: 186 TLGCCREVGRASFILSTPETRILIDCGDKPGSDDAPYLQVPEANPL-------NSLDAVV 238
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
+TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S
Sbjct: 239 LTHAHLDHSALIPLLFK-YGYDGPIYTTEPTRDLMGLLQLDYLDVAA-KEGRSPPYDSAM 296
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTP 182
+ E +K I ++ + D+++ + AGH+LG+++ + +GD + ++GD +
Sbjct: 297 VREAVKHAIPIEYGDVTDIAPDVKLTLHNAGHILGSSVAHFHIGDGFYNVAFSGDIHYDD 356
Query: 183 DRHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 357 TRLFNGAVNDFPRVETLVME 376
>gi|345004156|ref|YP_004807009.1| KH-domain/beta-lactamase-domain-containing protein [halophilic
archaeon DL31]
gi|344319782|gb|AEN04636.1| KH-domain/beta-lactamase-domain protein [halophilic archaeon DL31]
Length = 643
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ V+ R++ DCG Y + N +D +V+TH
Sbjct: 187 LGCCREVGRAAFVLNTAETRVLVDCGDKPGAEGEVPYLQIPEALGAGAQN--LDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ + E
Sbjct: 245 AHLDHSALIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRTPPYESEQVRE 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + DL++ + AGH+LG+A+ + VGD + ++GD + R
Sbjct: 303 AIKHCIPLEYGDVTDIAPDLKLTFHNAGHILGSAVSHFHVGDGLYNVCFSGDIHYEDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 363 FNGAVNDFPRVETLVME 379
>gi|300867486|ref|ZP_07112137.1| hypothetical protein OSCI_3400008 [Oscillatoria sp. PCC 6506]
gi|300334480|emb|CBN57305.1| hypothetical protein OSCI_3400008 [Oscillatoria sp. PCC 6506]
Length = 871
Score = 92.4 bits (228), Expect = 1e-16, Method: Composition-based stats.
Identities = 67/201 (33%), Positives = 96/201 (47%), Gaps = 21/201 (10%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA + +G SC + I ++ DCG P + ++ N D ++++H
Sbjct: 306 LGAARGIGASCFRIEIGPYEVVLDCGSR---------PKGYDPLPALEYLNNPDLLIVSH 356
Query: 68 FHLDHIGALPFFTEICGYNG-PIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
HLDH+GA+P F Y G I T TR +A IML D KV F +
Sbjct: 357 AHLDHLGAVPVFHN--RYPGVRIICTQGTREIAHIMLRDCLKVQSLNEDSTPLFDDVDLE 414
Query: 127 ECMKKVIAVDLKQTVQVDKD----LQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ ++ Q V VD + L++R AGH+LGAA Y G+ +++YTGDYN T
Sbjct: 415 RTLFRLET----QPVGVDFEPLPGLKVRFINAGHILGAACIYMTCGERSLIYTGDYNTTS 470
Query: 183 DRHLGAARI-DRLQLDLLITE 202
R R+ D Q D+LITE
Sbjct: 471 SRTTTGLRLADLPQADILITE 491
>gi|448729880|ref|ZP_21712192.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus saccharolyticus DSM 5350]
gi|445794201|gb|EMA44754.1| universal archaeal kh-domain/beta-lactamase-domain-containing
protein [Halococcus saccharolyticus DSM 5350]
Length = 635
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 103/200 (51%), Gaps = 13/200 (6%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIV 64
LG +EVG++ +++ RI+ DCG +D + Q P+ + + N++D +V
Sbjct: 186 TLGCCREVGRASFILSTPETRILIDCGDKPGSDDAPYLQVPEANPL-------NSLDAVV 238
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
+TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S
Sbjct: 239 LTHAHLDHSALIPLLFK-YGYDGPIYTTEPTRDLMGLLQLDYLDVAA-KEGRSPPYDSAM 296
Query: 125 IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTP 182
+ E +K I ++ + D+++ + AGH+LG+++ + +GD + ++GD +
Sbjct: 297 VREAVKHAIPIEYGDVTDIAPDVKLTLHNAGHILGSSVAHFHIGDGFYNVAFSGDIHYDD 356
Query: 183 DRHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 357 TRLFNGAVNDFPRVETLVME 376
>gi|167043166|gb|ABZ07875.1| putative Metallo-beta-lactamase superfamily protein [uncultured
marine crenarchaeote HF4000_ANIW141J13]
Length = 643
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 8/203 (3%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQ-YPDFSRISKSCDFNNAID 61
+ L LG +VG+SC+++T +++ DCG++ R YP + + D +D
Sbjct: 186 VSLLTLGGFGQVGRSCMLLTTPDSKVLVDCGINPGTRIPRDAYPRLDWANITLD---DLD 242
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
+VI H HLDH G LP + GY GPIY T PT + ++ D KV V +G +
Sbjct: 243 AVVIGHAHLDHTGFLPVLLK-YGYKGPIYCTEPTLPMMNLIQLDAIKVSVA-QGRTPMYA 300
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM--FYAKVGDSAMVYTGDYN 179
+ + M++ I + + D+++ AGH+LG+A F+ G+ VYTGD
Sbjct: 301 DRDVFQVMRQTITIPYGAVTDISPDIKLVLSNAGHILGSATCHFHIGNGEHNFVYTGDIK 360
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
L +A + +++ L+ E
Sbjct: 361 YGKSMLLESANTNYPRVETLLIE 383
>gi|410460059|ref|ZP_11313745.1| RNA-metabolising metallo-beta-lactamase [Bacillus azotoformans LMG
9581]
gi|409927679|gb|EKN64809.1| RNA-metabolising metallo-beta-lactamase [Bacillus azotoformans LMG
9581]
Length = 907
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 59/204 (28%), Positives = 100/204 (49%), Gaps = 20/204 (9%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LG G EVG SC+ + + ++ D GM M +D P + +D ++IT
Sbjct: 5 ILGGGNEVGASCIHINMGETNLLVDAGMRMHGDD--SLPALGMLESL----GKLDAVLIT 58
Query: 67 HFHLDHIGALP----FFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--- 119
H H DHIGALP F +I P Y T PT L IM++D K+L R ++
Sbjct: 59 HAHADHIGALPIVHSLFPDI-----PFYATPPTIDLIKIMMKDSYKILEQRSYQMNTLMP 113
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+T + + ++ + +++ DL+I ++ AGH+LGA MF + ++ TGD +
Sbjct: 114 YTEEQVNNLFNSLLHIPASGVLRIG-DLKITSFRAGHILGAVMFLIEGDQQQLLITGDLS 172
Query: 180 MTPDRHLGAARI-DRLQLDLLITE 202
R + A + ++ D+++ E
Sbjct: 173 FRAGRTIPGAEVPHQVNPDVIVIE 196
>gi|257053759|ref|YP_003131592.1| beta-lactamase domain protein [Halorhabdus utahensis DSM 12940]
gi|256692522|gb|ACV12859.1| beta-lactamase domain protein [Halorhabdus utahensis DSM 12940]
Length = 641
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 55/198 (27%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG +EVG++ +++ R++ D G D +YP + ++ ++ ++ID +V+T
Sbjct: 187 LGCCREVGRASFILSTPETRVLIDAGDKPGAED--EYP-YLQVPEALGVGASSIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDVAA-KEGRAPPYDSEMVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHTIPIEYGDVTDISPDIKLTMHNAGHILGSAISHFHIGDGLYNVAFSGDIHYDDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A + +++ L+ E
Sbjct: 362 LFNGAVNEFPRVETLVLE 379
>gi|223478352|ref|YP_002582770.1| RNA-metabolising metallo-beta-lactamase family protein
[Thermococcus sp. AM4]
gi|214033578|gb|EEB74405.1| RNA-metabolising metallo-beta-lactamase family [Thermococcus sp.
AM4]
Length = 648
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 14/204 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYN-------DHRQYPDFSRISKSCDFNNAI 60
LG +EVG+S ++V + ++ D G+++A H P+F + +
Sbjct: 191 LGGFREVGRSALLVQTDESYVLVDFGVNIAAMRDPLKAFPHFDAPEFRYVLDE----GLL 246
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D I+ITH HLDH G LP+ ++GPIY T PTR L ++ +D+ ++ G +
Sbjct: 247 DAIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQ-HMNGMEPLY 305
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDY 178
I E +K I +D + + D+++ + AGH+LG+A+ + +G+ + TGD+
Sbjct: 306 RPRDIKEVIKHTITLDYGEVRDIAPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAVTGDF 365
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
P R L A +++ L+ E
Sbjct: 366 KFIPTRLLEPAVSRFPRVETLVME 389
>gi|240103777|ref|YP_002960086.1| RNA-metabolising metallo-beta-lactamase, beta-CASP family protein
[Thermococcus gammatolerans EJ3]
gi|239911331|gb|ACS34222.1| RNA-metabolising metallo-beta-lactamase, beta-CASP family protein
[Thermococcus gammatolerans EJ3]
Length = 651
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 58/204 (28%), Positives = 102/204 (50%), Gaps = 14/204 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYN-------DHRQYPDFSRISKSCDFNNAI 60
LG +EVG+S ++V + ++ D G+++A H P+F + +
Sbjct: 194 LGGFREVGRSALLVQTDESYVLVDFGVNIAAMRDPLKAFPHFDAPEFRYVLDE----GLL 249
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D I+ITH HLDH G LP+ ++GPIY T PTR L ++ +D+ ++ G +
Sbjct: 250 DAIIITHAHLDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQ-HMNGMEPLY 308
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDY 178
I E +K I +D + + D+++ + AGH+LG+A+ + +G+ + TGD+
Sbjct: 309 RPRDIKEVIKHTITLDYGEVRDIAPDIRLTLHNAGHILGSAIVHLHIGNGLHNIAITGDF 368
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
P R L A +++ L+ E
Sbjct: 369 KFIPTRLLEPAVSRFPRVETLVME 392
>gi|45358944|ref|NP_988501.1| beta-lactamase-like protein [Methanococcus maripaludis S2]
gi|340624691|ref|YP_004743144.1| beta-lactamase-like protein [Methanococcus maripaludis X1]
gi|45047810|emb|CAF30937.1| Beta-lactamase-like:ATP/GTP-binding site motif A (P-loop)
[Methanococcus maripaludis S2]
gi|339904959|gb|AEK20401.1| beta-lactamase-like protein [Methanococcus maripaludis X1]
Length = 422
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 23/194 (11%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G ++GKSCV + +I+ DCGM + N PD + ++ +D +V++H
Sbjct: 8 GGCHQIGKSCVEINTKKSKILIDCGMDPSDNG---LPDIN--------DSDVDAVVVSHA 56
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GA+P+F I+ PT L V D + + + I +
Sbjct: 57 HLDHCGAIPYFN-----FKKIFCNPPTADL-------MYNVWKDTVSLSKTYKEEDIKKS 104
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M + V+ ++ QV D++++ Y AGH+LG++ Y + ++YTGD N R L A
Sbjct: 105 MDVIKTVNYREEKQVTSDIKMKMYDAGHILGSSSLYLDIDGKKLLYTGDINEIETRTLRA 164
Query: 189 ARIDRLQLDLLITE 202
A D ++D +I E
Sbjct: 165 ADTDFDEIDTIIIE 178
>gi|95768245|gb|ABF57340.1| cleavage and polyadenylation specific factor 3 [Bos taurus]
Length = 114
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 62/102 (60%), Gaps = 5/102 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV 109
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV 113
>gi|320449268|ref|YP_004201364.1| metallo-beta-lactamase family protein [Thermus scotoductus SA-01]
gi|320149437|gb|ADW20815.1| metallo-beta-lactamase family protein [Thermus scotoductus SA-01]
Length = 431
Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/172 (32%), Positives = 90/172 (52%), Gaps = 17/172 (9%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
GA +EV SC ++ G++I+ DCGM + + + F F+ A+D +V+T
Sbjct: 6 FGAAREVTGSCHLLLAEGRKILLDCGMFQGREEEKNHTPFG-------FDPQAVDAVVLT 58
Query: 67 HFHLDHIGALP-FFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
H HLDH+G LP F E GY GP+Y T T L I+L+D KV+ E F + +
Sbjct: 59 HAHLDHVGRLPKLFRE--GYRGPVYATQATFLLMQIILQDALKVM-----ETPFFEEEDV 111
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
E ++ V ++ + +++ DL + AGH+ G+A + +VY+GD
Sbjct: 112 EEALRHVRLLEFGEWLRLG-DLTLTFGQAGHLPGSAFVVVQGEGKTLVYSGD 162
>gi|76800760|ref|YP_325768.1| mRNA 3'-end processing factor [Natronomonas pharaonis DSM 2160]
gi|76556625|emb|CAI48196.1| beta-lactamase domain protein [Natronomonas pharaonis DSM 2160]
Length = 639
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ ++ R++ DCG Y + N +D +V+TH
Sbjct: 187 LGCCREVGRAAFILNTPETRVLIDCGDKPGAEGEVPYLQVPEALGAGASN--LDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S + E
Sbjct: 245 AHLDHSALIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDV-ASKEGRTPPYDSSQVRE 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + DL++ + AGH+LG+A+ + VGD + ++GD + R
Sbjct: 303 AIKHCIPLEYGDVTDIAPDLKLTFHNAGHILGSAVTHFHVGDGLYNVAFSGDIHYDDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 363 FNGAVNDFPRVETLVLE 379
>gi|150402550|ref|YP_001329844.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C7]
gi|150033580|gb|ABR65693.1| beta-lactamase domain protein [Methanococcus maripaludis C7]
Length = 422
Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 23/194 (11%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G ++GKSCV + +I+ DCGM + N PD + ++ +D ++++H
Sbjct: 8 GGCHQIGKSCVEINTKKSKILIDCGMDPSDNG---LPDIT--------DSDVDAVLVSHA 56
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GA+P+F IY PT L V D + + + I +
Sbjct: 57 HLDHCGAIPYFN-----FKKIYCNPPTADL-------MYNVWKDTVSLSKTYREEDIKKS 104
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M + V+ ++ QV D++++ Y AGH+LG++ Y + ++YTGD N R L A
Sbjct: 105 MDVIKTVNYREEKQVTPDIKMKMYDAGHILGSSSLYLDIDGKKLLYTGDINEIETRTLRA 164
Query: 189 ARIDRLQLDLLITE 202
A D ++D +I E
Sbjct: 165 ADTDFDEIDTIIIE 178
>gi|15789650|ref|NP_279474.1| mRNA 3'-end processing factor-like protein [Halobacterium sp.
NRC-1]
gi|169235363|ref|YP_001688563.1| mRNA 3'-end processing factor-like protein [Halobacterium salinarum
R1]
gi|10580012|gb|AAG18954.1| mRNA 3'-end processing factor homolog [Halobacterium sp. NRC-1]
gi|167726429|emb|CAP13214.1| beta-lactamase domain protein [Halobacterium salinarum R1]
Length = 641
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ V++ RI+ DCG D + P N ID +++T
Sbjct: 186 TLGCCREVGRASFVLSTPETRILVDCGDKPGSED--EVPYLQVQEALAGGANTIDAVILT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSAFIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRAPPYDSEMVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYDDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVME 379
>gi|312127068|ref|YP_003991942.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
hydrothermalis 108]
gi|311777087|gb|ADQ06573.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
hydrothermalis 108]
Length = 822
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 103/203 (50%), Gaps = 14/203 (6%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LG +EVG SCV++ K I+ D G+ M + + P+ + + +D
Sbjct: 1 MEIVFLGGAKEVGASCVLIKACNKNILIDSGIRMKED---KLPNLQLLREL----GGVDV 53
Query: 63 IVITHFHLDHIGALPFFTEICGYNGP---IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
+I+H HLDHIG+LP P Y PT+ L ++L D +++ E+
Sbjct: 54 CLISHAHLDHIGSLPLIAR----EYPQIFFYANQPTKDLIKVLLYDSLRIMEIAEDEIPI 109
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ ++ + + + + T + + +++ + AGH+LGA+M + + + +++YTGD++
Sbjct: 110 YAEKNVEDLLDRTLTYGFNYTFEPIEGIKVTFFSAGHILGASMIFIQTQEGSILYTGDFS 169
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
+ A + +++ D++I E
Sbjct: 170 ADKQLTVDKASVPKIRPDIVICE 192
>gi|448411939|ref|ZP_21576295.1| mRNA 3'-end processing factor [Halosimplex carlsbadense 2-9-1]
gi|445669873|gb|ELZ22481.1| mRNA 3'-end processing factor [Halosimplex carlsbadense 2-9-1]
Length = 639
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ R++ DCG D Y S +++D +V+TH
Sbjct: 187 LGCCREVGRAAFILSTPETRVLIDCGDKPGAEDEVPYLQVPEALGSGP--SSLDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ + E
Sbjct: 245 AHLDHSALIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDV-ASKEGRTPPYESEMVRE 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + +GH+LG+A+ + +GD + ++GD + R
Sbjct: 303 AIKHTIPLEYGDVTDIAPDIKLTLHNSGHILGSAISHFHIGDGLYNVAFSGDIHYDDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
A + +++ L+ E
Sbjct: 363 FNGAVNEFPRVETLVLE 379
>gi|227827984|ref|YP_002829764.1| beta-lactamase [Sulfolobus islandicus M.14.25]
gi|227459780|gb|ACP38466.1| beta-lactamase domain protein [Sulfolobus islandicus M.14.25]
Length = 519
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 102/197 (51%), Gaps = 14/197 (7%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LG G+EVG+S + V + I+ D G++ D+ +P + N + V++
Sbjct: 104 ILGGGREVGRSAIEVGNSDSSIILDYGVNFDEKDNPNFP-------LQEVPNRVKGFVVS 156
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH+GALP + +I N +Y T TR + +ML+D+ K+ G + +
Sbjct: 157 HAHLDHVGALPIY-QIGSLNTKVYGTVATRIITEVMLKDFLKL----SGSKIPYEWVEVR 211
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ M +A+ + +++D +++ Y AGH+ G+++ A+ +TGD N+T + +
Sbjct: 212 KTMDNFMAIGYGEEMEID-SMKVSLYNAGHIPGSSIIKVSSEKGAVAFTGDINLTETKLM 270
Query: 187 GAARIDRL-QLDLLITE 202
A I+ + ++L+ E
Sbjct: 271 KPAEIESIGNANVLVME 287
>gi|238620212|ref|YP_002915038.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
M.16.4]
gi|238381282|gb|ACR42370.1| beta-lactamase domain protein [Sulfolobus islandicus M.16.4]
Length = 519
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 102/197 (51%), Gaps = 14/197 (7%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LG G+EVG+S + V + I+ D G++ D+ +P + N + V++
Sbjct: 104 ILGGGREVGRSAIEVGNSDSSIILDYGVNFDEKDNPNFP-------LQEVPNRVKGFVVS 156
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH+GALP + +I N +Y T TR + +ML+D+ K+ G + +
Sbjct: 157 HAHLDHVGALPIY-QIGSLNTKVYGTVATRIITEVMLKDFLKL----SGSKIPYEWVEVR 211
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ M +A+ + +++D +++ Y AGH+ G+++ A+ +TGD N+T + +
Sbjct: 212 KTMDNFMAIGYGEEMEID-SMKVSLYNAGHIPGSSIIKVSSEKGAVAFTGDINLTETKLM 270
Query: 187 GAARIDRL-QLDLLITE 202
A I+ + ++L+ E
Sbjct: 271 KPAEIESIGNANVLVME 287
>gi|225850137|ref|YP_002730371.1| metallo-beta-lactamase family protein [Persephonella marina EX-H1]
gi|225645326|gb|ACO03512.1| metallo-beta-lactamase family protein [Persephonella marina EX-H1]
Length = 468
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 97/193 (50%), Gaps = 27/193 (13%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
GA + V SC ++T +I+ DCG+ ++ R Y F K D+ +++TH
Sbjct: 10 FGAAKTVTGSCHLITAGKLKILVDCGLFQGIDEERNYDPFLFDPKDIDY------LIVTH 63
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVD----------RRGEV 117
HLDHIG +P + G+ G I T PTR ++ IML D KV+ + RRGE
Sbjct: 64 AHLDHIGRIPLLVK-NGFRGKIISTKPTRIISRIMLLDAAKVMEEEYRVEYRKALRRGEP 122
Query: 118 EQ-----FTSDHIAECMKKV-IAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKV---- 167
E+ F D + E M+ I ++ Q +++ + ++IR AGH+LG+A +
Sbjct: 123 EKVKPPLFDEDDVYEAMEHFRIQLEYDQPLKLTESIRIRFKNAGHILGSAYVQIDIDTVS 182
Query: 168 GDSAMVYTGDYNM 180
G ++++GD +
Sbjct: 183 GVKTLIFSGDLGL 195
>gi|397772828|ref|YP_006540374.1| KH-domain/beta-lactamase-domain protein [Natrinema sp. J7-2]
gi|397681921|gb|AFO56298.1| KH-domain/beta-lactamase-domain protein [Natrinema sp. J7-2]
Length = 720
Score = 91.7 bits (226), Expect = 2e-16, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ RI+ DCG D + P ID +V+TH
Sbjct: 263 LGCCREVGRASFILSTPETRILIDCGDKPGAED--EVPYLHAPEALGAGPQTIDAVVLTH 320
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR + ++ DY V + G + S+ + E
Sbjct: 321 AHLDHSALIPLLFKY-GYDGPIYCTEPTRDMMGLLTLDYLDVAA-KEGRSPPYESEQVRE 378
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 379 AIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDTRL 438
Query: 186 LGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 439 FNGAVNDFPRVETLVLE 455
>gi|354611945|ref|ZP_09029897.1| KH-domain/beta-lactamase-domain protein [Halobacterium sp. DL1]
gi|353191523|gb|EHB57029.1| KH-domain/beta-lactamase-domain protein [Halobacterium sp. DL1]
Length = 641
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 101/199 (50%), Gaps = 8/199 (4%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA-IDCIVI 65
LG +EVG++ +++ RI+ DCG D Y ++ ++ A ID +V+
Sbjct: 186 TLGCCREVGRASFILSTPETRILIDCGDKPGSEDEVPY---LQVQEALGAGAATIDAVVL 242
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 243 THAHLDHSALIPILFK-YGYDGPIYTTEPTRDLMGLLTLDYLDVAA-KEGRAPPYESEMV 300
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPD 183
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD +
Sbjct: 301 REAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYDDT 360
Query: 184 RHLGAARIDRLQLDLLITE 202
R A D +++ L+ E
Sbjct: 361 RLFNGAVNDFPRVETLVLE 379
>gi|229579615|ref|YP_002838014.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
Y.G.57.14]
gi|229581719|ref|YP_002840118.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
Y.N.15.51]
gi|284998234|ref|YP_003420002.1| hypothetical protein [Sulfolobus islandicus L.D.8.5]
gi|228010330|gb|ACP46092.1| beta-lactamase domain protein [Sulfolobus islandicus Y.G.57.14]
gi|228012435|gb|ACP48196.1| beta-lactamase domain protein [Sulfolobus islandicus Y.N.15.51]
gi|284446130|gb|ADB87632.1| conserved hypothetical protein [Sulfolobus islandicus L.D.8.5]
Length = 519
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 101/197 (51%), Gaps = 14/197 (7%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LG G+EVG+S + V + I+ D G++ D+ +P + N + V++
Sbjct: 104 ILGGGREVGRSAIEVGNSDSSIILDYGVNFDEKDNPNFP-------LQEVPNRVKGFVVS 156
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH+GALP + +I N +Y T TR + +ML+D+ K+ G + +
Sbjct: 157 HAHLDHVGALPIY-QIGSLNTKVYGTVATRIITEVMLKDFLKL----SGSKIPYEWVEVR 211
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ M +A+ + ++D +++ Y AGH+ G+++ A+ +TGD N+T + +
Sbjct: 212 KTMDNFMAIGYGEETEID-SMKVSLYNAGHIPGSSIIKVSSEKGAVAFTGDINLTETKLM 270
Query: 187 GAARIDRL-QLDLLITE 202
A I+ + ++L+ E
Sbjct: 271 KPAEIESIGNANVLVME 287
>gi|227830721|ref|YP_002832501.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
L.S.2.15]
gi|385773691|ref|YP_005646258.1| beta-lactamase [Sulfolobus islandicus HVE10/4]
gi|385776326|ref|YP_005648894.1| beta-lactamase [Sulfolobus islandicus REY15A]
gi|227457169|gb|ACP35856.1| beta-lactamase domain protein [Sulfolobus islandicus L.S.2.15]
gi|323475074|gb|ADX85680.1| beta-lactamase domain protein [Sulfolobus islandicus REY15A]
gi|323477805|gb|ADX83043.1| beta-lactamase domain protein [Sulfolobus islandicus HVE10/4]
Length = 519
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 101/197 (51%), Gaps = 14/197 (7%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LG G+EVG+S + V + I+ D G++ D+ +P + N + V++
Sbjct: 104 ILGGGREVGRSAIEVGNSDSSIILDYGVNFDEKDNPNFP-------LQEVPNRVKGFVVS 156
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH+GALP + +I N +Y T TR + +ML+D+ K+ G + +
Sbjct: 157 HAHLDHVGALPIY-QIGSLNTKVYGTVATRIITEVMLKDFLKL----SGSKIPYEWVEVR 211
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ M +A+ + ++D +++ Y AGH+ G+++ A+ +TGD N+T + +
Sbjct: 212 KTMDNFMAIGYGEETEID-SMKVSLYNAGHIPGSSIIKVSSEKGAVAFTGDINLTETKLM 270
Query: 187 GAARIDRL-QLDLLITE 202
A I+ + ++L+ E
Sbjct: 271 KPAEIESIGNANVLVME 287
>gi|156341423|ref|XP_001620755.1| hypothetical protein NEMVEDRAFT_v1g147152 [Nematostella vectensis]
gi|156206058|gb|EDO28655.1| predicted protein [Nematostella vectensis]
Length = 71
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 54/70 (77%)
Query: 42 RQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPI 101
R++PDF I++S +DC++I+HFHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI
Sbjct: 1 RRFPDFDYITRSGKLTEHLDCVLISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPI 60
Query: 102 MLEDYRKVLV 111
+L Y + +
Sbjct: 61 LLVQYARTTI 70
>gi|159905675|ref|YP_001549337.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C6]
gi|159887168|gb|ABX02105.1| beta-lactamase domain protein [Methanococcus maripaludis C6]
Length = 422
Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 93/194 (47%), Gaps = 23/194 (11%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G ++GKSCV + +I+ DCGM + N PD ++ +D ++++H
Sbjct: 8 GGCHQIGKSCVEINTKKSKILIDCGMDPSDNG---LPDIK--------DSDVDAVLVSHA 56
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GA+P+F IY PT L V D + + + I +
Sbjct: 57 HLDHCGAIPYFN-----FKKIYCNPPTADL-------MYNVWKDTVSLSKTYREEDIKKS 104
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M + V+ ++ QV D++++ Y AGH+LG++ Y + ++YTGD N R L A
Sbjct: 105 MDVIKTVNYREEKQVTPDIKMKMYDAGHILGSSSLYLDIDGKKLLYTGDINEIETRTLRA 164
Query: 189 ARIDRLQLDLLITE 202
A D ++D +I E
Sbjct: 165 ADTDFDEIDTIIIE 178
>gi|448400247|ref|ZP_21571314.1| KH-domain/beta-lactamase-domain-containing protein [Haloterrigena
limicola JCM 13563]
gi|445667787|gb|ELZ20427.1| KH-domain/beta-lactamase-domain-containing protein [Haloterrigena
limicola JCM 13563]
Length = 644
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ RI+ DCG + P ID +V+TH
Sbjct: 187 LGCCREVGRASFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ + E
Sbjct: 245 AHLDHSALIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRTPPYESEQVRE 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 303 AIKHTIPLEYGDVTDIAPDVKLTLHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 363 FNGATNDFPRVETLVME 379
>gi|422295773|gb|EKU23072.1| cleavage and polyadenylation specificity factor subunit 3
[Nannochloropsis gaditana CCMP526]
Length = 182
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 76/145 (52%), Gaps = 17/145 (11%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA +EVG+SC+++ G+ IM DCG+H P F S ID I+I+H
Sbjct: 28 LGAAKEVGRSCLILRYKGRTIMLDCGIHPGRTGDDALPFFD----SGPDAEEIDIILISH 83
Query: 68 FHLDHIGALPFFTEIC---GYNGPIYMTYPTRALAPIMLEDYRK----------VLVDRR 114
FHLDH +LP+FTE + G I+ T+PT+A+ +ML+++ + D
Sbjct: 84 FHLDHAASLPYFTEKVQGGAFKGRIFATHPTKAIMRLMLQNHIRTDSVRLAADGTSADEG 143
Query: 115 GEVEQFTSDHIAECMKKVIAVDLKQ 139
E +T + + C+ K+ +D +Q
Sbjct: 144 AEAPLYTEEELQACLDKIEVIDFQQ 168
>gi|261191614|ref|XP_002622215.1| endoribonuclease ysh1 [Ajellomyces dermatitidis SLH14081]
gi|239589981|gb|EEQ72624.1| endoribonuclease ysh1 [Ajellomyces dermatitidis SLH14081]
Length = 894
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 62/209 (29%), Positives = 110/209 (52%), Gaps = 23/209 (11%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK +M D GMH A P F DF+ + +D ++I+
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFAALPFFD------DFDLSTVDILLIS 83
Query: 67 HF-----HLDHIGALPFFTEICGYNGP--IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
+ H+ +I + ++MT+ T+A+ +++D +V + +Q
Sbjct: 84 QYVELFILFYHVLNFDLGADILDWRDKRRVFMTHATKAIYKWLIQDNVRV-SNTSSSSDQ 142
Query: 120 FTS-----DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVY 174
T+ DH++ + ++ A+D T ++ ++I + AGHVLGAAMF + +++
Sbjct: 143 RTTLYTEQDHLST-LSQIEAIDFNTTHTINS-IRITPFPAGHVLGAAMFLISIAGLNILF 200
Query: 175 TGDYNMTPDRHLGAARIDR-LQLDLLITE 202
TGDY+ DRHL +A + +++D+LITE
Sbjct: 201 TGDYSREEDRHLISAEAPKGIKIDVLITE 229
>gi|335427370|ref|ZP_08554304.1| beta-lactamase domain protein [Haloplasma contractile SSD-17B]
gi|334895366|gb|EGM33539.1| beta-lactamase domain protein [Haloplasma contractile SSD-17B]
Length = 398
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 103/206 (50%), Gaps = 17/206 (8%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCG--MHMAYNDHRQ-YPDFSRI-SKSCDFNNAID 61
+ LG G EVG S +T++G I+ DCG ++ + D R YP + + SK D +D
Sbjct: 5 MALGGGNEVGASSYYLTLDGVNILLDCGARVYSSLRDRRPIYPAYETLTSKVLDGLFELD 64
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRR--GEVEQ 119
I I+H H DHIG+LP + N PIY T+ T+ + L + + ++ ++ +
Sbjct: 65 LIFISHSHYDHIGSLPHVAK-QAINAPIYATHTTKEFTDLQLRTLKLGMSEKHTPKKIRE 123
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG--- 176
I + KVI + +T K++ Y +GH+ G AM Y + D ++YTG
Sbjct: 124 LKETEIDSAIDKVIDLSYDKTYPY-KNISYTFYASGHISGGAMVYIQSKDMNVLYTGDFS 182
Query: 177 --DYNMTPDRHLGAARIDRLQLDLLI 200
DY +TP +L L++D+LI
Sbjct: 183 DQDYPLTPSYNLPK----NLKVDVLI 204
>gi|88602138|ref|YP_502316.1| beta-lactamase-like protein [Methanospirillum hungatei JF-1]
gi|88187600|gb|ABD40597.1| beta-lactamase-like protein [Methanospirillum hungatei JF-1]
Length = 629
Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/205 (29%), Positives = 104/205 (50%), Gaps = 14/205 (6%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQY---PDFSRISKSCDFNNA 59
I LG +EVG++ +++ R++ DCG + Y P+ +S+
Sbjct: 179 IRVTTLGCCREVGRAAFLLSTPESRVLIDCGEKPDSFEATPYLYVPEIHPLSQ------- 231
Query: 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
+D +V+TH HLDH +P + GY GP+Y T PTR LA ++ DY V V++ G+
Sbjct: 232 LDAVVLTHAHLDHCAYIPLLYKY-GYEGPVYSTPPTRDLAAMLQLDYLDV-VNKEGKPIP 289
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGD 177
++S+ + E +K I ++ + D+++ + AGH+LG+ + + VGD + +TGD
Sbjct: 290 YSSNEVKEYIKHSIVLNYGCVTDIAPDIKLTFHNAGHILGSGIAHFHVGDGLYNVAFTGD 349
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
+ R AA +L+ L E
Sbjct: 350 LHYGKSRLFNAAVNHYPRLEALFME 374
>gi|389843051|ref|YP_006345131.1| exonuclease [Mesotoga prima MesG1.Ag.4.2]
gi|387857797|gb|AFK05888.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Mesotoga prima MesG1.Ag.4.2]
Length = 443
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 107/199 (53%), Gaps = 13/199 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G+E+G + +++++GK I+ D G H + P+ +I N +D I+I+H
Sbjct: 6 LGGGREIGANSYLLSLDGKNILIDAGRHPVKEGYESLPEIDKI-------NDLDVIMISH 58
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGE--VEQFTSDH- 124
H DH+ +LP+ ++ N PI M + LA +L++ +V+ + + VE +H
Sbjct: 59 SHYDHLSSLPYISQRWP-NAPILMAQENKGLALRILQNSVEVMKKKNAKDGVEPILYNHG 117
Query: 125 -IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
+ E +++ ++ Q +D + + Y AGHV+GAA + + ++Y+GD +++
Sbjct: 118 EVNELKRRIYPMEYFQRYSIDDVVDVALYPAGHVMGAASIFLEHRGRRILYSGDISLSQQ 177
Query: 184 RHLGAARIDRLQLDLLITE 202
+ A++ + +++ LI+E
Sbjct: 178 LTIPPAQLPK-KVETLISE 195
>gi|329766104|ref|ZP_08257663.1| beta-lactamase domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
gi|329137375|gb|EGG41652.1| beta-lactamase domain-containing protein [Candidatus
Nitrosoarchaeum limnia SFB1]
Length = 645
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 100/203 (49%), Gaps = 8/203 (3%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDHRQYPDFSRISKSCDFNNAID 61
+ + LG +VG+SC++++ +I+ DCG++ A + +P + + D +D
Sbjct: 188 VSLITLGGFSQVGRSCMLLSTPESKILVDCGINPGAKHPMDSFPRLDFLDITLD---ELD 244
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
+VI H HLDH G LP + GY GPIY T PT + ++ D KV +G +
Sbjct: 245 AVVIGHAHLDHTGFLPALCKF-GYKGPIYCTEPTLPMMNLIQLDAIKV-ASAQGRTPMYA 302
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM--FYAKVGDSAMVYTGDYN 179
+ + MK+ I + + D+++ AGH+LG+A+ F+ GD VY+GD
Sbjct: 303 ERDVKQIMKQAITLPYSTVTDISPDIKLVFANAGHILGSALCHFHIGNGDHNFVYSGDIK 362
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
AA + +++ L+ E
Sbjct: 363 FGKSILFEAASWNFPRVETLLIE 385
>gi|229585253|ref|YP_002843755.1| beta-lactamase domain-containing protein [Sulfolobus islandicus
M.16.27]
gi|228020303|gb|ACP55710.1| beta-lactamase domain protein [Sulfolobus islandicus M.16.27]
Length = 519
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 102/197 (51%), Gaps = 14/197 (7%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LG G+EVG+S + V + I+ D G++ D+ +P + N + V++
Sbjct: 104 ILGGGREVGRSAIEVGNSDGSIILDYGVNFDEKDNPNFP-------LQEVPNRVKGFVVS 156
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH+GALP + +I N +Y T TR + +ML+D+ K+ G + +
Sbjct: 157 HAHLDHVGALPIY-QIGSLNTKVYGTVATRIITEVMLKDFLKL----SGSKIPYEWVEVR 211
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ M +A+ + +++D +++ Y AGH+ G+++ A+ +TGD N+T + +
Sbjct: 212 KTMDNFMAIGYGEEMEID-SMKVSLYNAGHIPGSSIIKVSSEKGAVAFTGDINLTETKLM 270
Query: 187 GAARIDRL-QLDLLITE 202
A I+ + ++L+ E
Sbjct: 271 KPAEIESIGNANVLVME 287
>gi|336121871|ref|YP_004576646.1| RNA-metabolising metallo-beta-lactamase [Methanothermococcus
okinawensis IH1]
gi|334856392|gb|AEH06868.1| RNA-metabolising metallo-beta-lactamase [Methanothermococcus
okinawensis IH1]
Length = 422
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 97/194 (50%), Gaps = 23/194 (11%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G ++G SCV + +I+ DCGM+ + N + P + + +D +V++H
Sbjct: 8 GGCHQIGMSCVEIDTKKSKILLDCGMNPSDN---RLPSINP--------SDMDAVVVSHA 56
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GA+P+F IY T PT L I+ +D K+ + + I +
Sbjct: 57 HLDHCGAVPYFN-----FKKIYCTVPTVDLMYIVWKDISKL-------SKTYGEKDIKQA 104
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M+ + ++ ++ ++ KD+ ++ Y AGH+LG++ Y V ++YTGD N + L
Sbjct: 105 MESIETLNYREEKKITKDISMKLYDAGHILGSSSIYLDVDGKKVLYTGDINEIETKTLRP 164
Query: 189 ARIDRLQLDLLITE 202
A D ++D LI E
Sbjct: 165 ADTDIDEIDTLIIE 178
>gi|118431090|ref|NP_147298.2| exonuclease [Aeropyrum pernix K1]
gi|116062416|dbj|BAA79487.2| putative exonuclease [Aeropyrum pernix K1]
Length = 671
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 55/183 (30%), Positives = 96/183 (52%), Gaps = 12/183 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG+ EVG+S ++V +++ D G+ + YP + S +F + +D +VI+
Sbjct: 197 LGSFGEVGRSAILVDTGESKVLLDAGLSPSGYGPDSYPYYW----SPEFRVDELDAVVIS 252
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH+G LP + G+ GP+Y T PTR + I+L D ++ +GE F +
Sbjct: 253 HAHLDHVGTLPLLFKY-GFRGPVYATPPTRDIMIIVLRDLINLMRKAQGE-PPFEPRDVE 310
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGD---YNMT 181
+ + ++I V+ V D+++ AGH+LG++M + +G ++YT D Y +
Sbjct: 311 KALTRLIPVNYNTVTDVAPDIKMTFINAGHILGSSMVHLHIGQGLYNILYTADFKFYRIK 370
Query: 182 PDR 184
DR
Sbjct: 371 NDR 373
>gi|393794892|ref|ZP_10378256.1| beta-lactamase domain-containing protein [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 658
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 100/203 (49%), Gaps = 8/203 (3%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDHRQYPDFSRISKSCDFNNAID 61
+ + LG +VG+SC++++ +I+ DCG++ A + +P + + D +D
Sbjct: 201 VSLITLGGFSQVGRSCMLLSTPESKILVDCGINPGAKHPMDSFPRLDFLDITLD---ELD 257
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
+VI H HLDH G LP + GY GPIY T PT + ++ D KV +G +
Sbjct: 258 AVVIGHAHLDHTGFLPALCKF-GYKGPIYCTEPTLPMMNLIQLDAIKV-ASAQGRTPMYA 315
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM--FYAKVGDSAMVYTGDYN 179
+ + MK+ I + + D+++ AGH+LG+A+ F+ GD VY+GD
Sbjct: 316 ERDVKQIMKQAITLPYSTVTDISPDIKLVFANAGHILGSALCHFHIGNGDHNFVYSGDIK 375
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
AA + +++ L+ E
Sbjct: 376 FGKSILFEAASWNFPRVETLLIE 398
>gi|335437956|ref|ZP_08560713.1| beta-lactamase domain protein [Halorhabdus tiamatea SARL4B]
gi|334893560|gb|EGM31771.1| beta-lactamase domain protein [Halorhabdus tiamatea SARL4B]
Length = 640
Score = 90.9 bits (224), Expect = 3e-16, Method: Composition-based stats.
Identities = 54/198 (27%), Positives = 104/198 (52%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG +EVG++ +++ R++ D G D +YP + ++ ++ +++D +V+T
Sbjct: 187 LGCCREVGRAAFILSTPETRVLIDAGDKPGAED--EYP-YLQVPEALGVGASSLDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDVAA-KEGRSPPYDSEMVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHTIPIEYGDVTDISPDIKLTLHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYDDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A + +++ L+ E
Sbjct: 362 LFNGAVNEFPRVETLVLE 379
>gi|126179147|ref|YP_001047112.1| beta-lactamase domain-containing protein [Methanoculleus marisnigri
JR1]
gi|125861941|gb|ABN57130.1| beta-lactamase domain protein [Methanoculleus marisnigri JR1]
Length = 630
Score = 90.5 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 57/203 (28%), Positives = 101/203 (49%), Gaps = 19/203 (9%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND----HRQYPDFSRISKSCDFNNAIDCI 63
LG +EVG++ +++ +I+ DCG + P+ + N +D +
Sbjct: 184 LGCCREVGRAAFLISTPESKILVDCGEKPGSTTNGTPYLYVPEIYPL-------NTLDAV 236
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FT 121
V+TH HLDH +P + GY GP+Y T PTR L+ ++ DY V+ R E ++ +T
Sbjct: 237 VLTHAHLDHCALVPLLYKY-GYEGPVYSTAPTRDLSTMLQLDYLDVV---RKETDRIPYT 292
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYN 179
S+ + MK I ++ + D+++ + AGH+LG+A+ + +G+ + +TGD+N
Sbjct: 293 SNEVRTYMKHSITLNYGSVTDIAPDVKLTFHNAGHILGSAIAHFHIGEGLYNIAFTGDFN 352
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
R A +L+ L E
Sbjct: 353 YQKSRLFSPAVSSFPRLEALFME 375
>gi|167042245|gb|ABZ06976.1| putative Metallo-beta-lactamase superfamily protein [uncultured
marine crenarchaeote HF4000_ANIW93J19]
Length = 439
Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 14/203 (6%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
+++ VLGA EVG+S +V +G ++ D G+ A P + KS D +
Sbjct: 16 LSVKIKVLGAAGEVGRSGFLVNCDGTNLLLDYGVMFA-KKRTDPPIYPLHVKSKD----V 70
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D +ITH HLDH G +P G N +Y T PT L+ +++ED K+ ++ F
Sbjct: 71 DATIITHAHLDHSGCVPSL--FNGGNTSVYCTSPTLDLSMLLIEDMLKIEKNKH----SF 124
Query: 121 TSDHIAECMKKVIAVDLKQTVQV-DKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ H+ ++ + K+ V+V + ++R+ +GHV+G + + + + YTGD N
Sbjct: 125 HNGHVNSMLRNSKEIRFKEPVKVGNATFELRS--SGHVIGGSTVLVEANNKRLFYTGDIN 182
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
R L A +D +D+LITE
Sbjct: 183 PKGSRMLPKADLDIGDIDILITE 205
>gi|134045242|ref|YP_001096728.1| beta-lactamase domain-containing protein [Methanococcus maripaludis
C5]
gi|132662867|gb|ABO34513.1| beta-lactamase domain protein [Methanococcus maripaludis C5]
Length = 422
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 96/194 (49%), Gaps = 23/194 (11%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G ++GKSCV + +++ DCGM + N PD + ++ +D ++++H
Sbjct: 8 GGCHQIGKSCVEINTKKSKVLIDCGMDPSDNG---LPDIN--------DSDVDAVLVSHA 56
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GA+P+F IY PT A +M ++ D + + + I +
Sbjct: 57 HLDHCGAIPYFNF-----KKIYCNPPT---ADLMYNVWK----DTVSLSKTYREEDIKKS 104
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M + V+ ++ QV D++++ Y AGH+LG++ Y + ++YTGD N R L A
Sbjct: 105 MDVIKTVNYREEKQVTSDIKMKMYDAGHILGSSSLYLDIDGKKLLYTGDINEIETRTLRA 164
Query: 189 ARIDRLQLDLLITE 202
A D +D +I E
Sbjct: 165 ADTDFDNIDTIIIE 178
>gi|428308354|ref|YP_007119299.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428249902|gb|AFZ15677.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 822
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 64/203 (31%), Positives = 99/203 (48%), Gaps = 25/203 (12%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA + +G SC V I I+ D G P + + ++ + I+I+H
Sbjct: 252 LGAARGIGASCFRVLIGPYEIVLDAGTR---------PKGDKPLPAFEYLRNPNLILISH 302
Query: 68 FHLDHIGALPFFTEI---CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
H DHIGALP F ++ C P+ T TR +A +ML D K+ E F +
Sbjct: 303 AHQDHIGALPTFHKMFPAC----PMICTVGTRQIADVMLTDCLKIQQHNEDFQELFDEND 358
Query: 125 IAECM----KKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+ + + K + VD + L++R +AGH+LGAA Y + G+ +++YTGDYN
Sbjct: 359 LNQTIFQLQTKPVGVDFEPL----PGLKVRFIHAGHILGAACIYIRYGERSLLYTGDYNT 414
Query: 181 TPDRHLGAARI-DRLQLDLLITE 202
+ R R+ D + D+LITE
Sbjct: 415 SNSRTTDGLRLADLPEADMLITE 437
>gi|428304113|ref|YP_007140938.1| beta-lactamase [Crinalium epipsammum PCC 9333]
gi|428245648|gb|AFZ11428.1| beta-lactamase domain protein [Crinalium epipsammum PCC 9333]
Length = 804
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 64/203 (31%), Positives = 99/203 (48%), Gaps = 25/203 (12%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA + +G SC V I I+ D G P + + ++ + I+I+H
Sbjct: 234 LGAARGIGASCFRVLIGPYEIVLDAGTR---------PKGDKPLPAFEYLRNPNLILISH 284
Query: 68 FHLDHIGALPFFTEI---CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
H DHIGALP F ++ C P+ T TR +A +ML D K+ E F +
Sbjct: 285 AHQDHIGALPTFHKMFPAC----PMICTVGTRQIADVMLTDCLKIQQHNEDFQELFDEND 340
Query: 125 IAECM----KKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+ + + K + VD + L++R +AGH+LGAA Y + G+ +++YTGDYN
Sbjct: 341 LNQTIFQLQTKPVGVDFEPL----PGLKVRFIHAGHILGAACIYIRYGERSLLYTGDYNT 396
Query: 181 TPDRHLGAARI-DRLQLDLLITE 202
+ R R+ D + D+LITE
Sbjct: 397 SNSRTTDGLRLADLPEADMLITE 419
>gi|448377860|ref|ZP_21560556.1| KH-domain/beta-lactamase-domain-containing protein [Halovivax
asiaticus JCM 14624]
gi|445655804|gb|ELZ08649.1| KH-domain/beta-lactamase-domain-containing protein [Halovivax
asiaticus JCM 14624]
Length = 645
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ RI+ DCG + P ID +V+TH
Sbjct: 187 LGCSREVGRAAFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ + E
Sbjct: 245 AHLDHSALIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRTPPYESEQVRE 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 303 AIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 363 FNGAVNDFPRVETLVLE 379
>gi|340345702|ref|ZP_08668834.1| Beta-lactamase domain protein [Candidatus Nitrosoarchaeum koreensis
MY1]
gi|339520843|gb|EGP94566.1| Beta-lactamase domain protein [Candidatus Nitrosoarchaeum koreensis
MY1]
Length = 645
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 8/203 (3%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDHRQYPDFSRISKSCDFNNAID 61
+ + LG +VG+SC++++ +I+ DCG++ A + +P + + D +D
Sbjct: 188 VSLITLGGFSQVGRSCMLLSTPESKILVDCGINPGAKHPMDSFPRLDFLDITLD---ELD 244
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
IVI H HLDH G LP + GY GPIY T PT + ++ D KV + G ++
Sbjct: 245 AIVIGHAHLDHTGFLPALCKF-GYKGPIYCTEPTLPMMNLIQLDAIKVAAAQ-GRTPIYS 302
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM--FYAKVGDSAMVYTGDYN 179
+ + MK+ I + + D+++ AGH+LG+A+ F+ GD VY+GD
Sbjct: 303 ERDVKQIMKQAITLPYGTVTDISPDIKLVLANAGHILGSALCHFHIGNGDHNFVYSGDIK 362
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
AA + +++ L+ E
Sbjct: 363 FGKSILFEAASWNFPRVETLLIE 385
>gi|448391639|ref|ZP_21566734.1| KH-domain/beta-lactamase-domain-containing protein [Haloterrigena
salina JCM 13891]
gi|445665051|gb|ELZ17729.1| KH-domain/beta-lactamase-domain-containing protein [Haloterrigena
salina JCM 13891]
Length = 644
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ RI+ DCG + P ID +V+TH
Sbjct: 187 LGCCREVGRASFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ + E
Sbjct: 245 AHLDHSALIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRAPPYESEQVRE 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 303 AIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 363 FNGATNDFPRVETLVME 379
>gi|312792978|ref|YP_004025901.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312180118|gb|ADQ40288.1| RNA-metabolising metallo-beta-lactamase [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 822
Score = 90.5 bits (223), Expect = 4e-16, Method: Composition-based stats.
Identities = 49/203 (24%), Positives = 103/203 (50%), Gaps = 14/203 (6%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + LG +EVG SCV++ K I+ D G+ M + + P+ + + +D
Sbjct: 1 MEIVFLGGAKEVGASCVLIKACNKNILIDSGIRMKED---KLPNLQLLREL----GGVDV 53
Query: 63 IVITHFHLDHIGALPFFTEICGYNGP---IYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
+I+H HLDHIG+LP P Y PT+ L ++L D +++ E+
Sbjct: 54 CLISHAHLDHIGSLPLIAR----EYPHIFFYANQPTKDLIKVLLYDSLRIMEIAEDEIPI 109
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ ++ + + + + T + + +++ + AGH+LGA+M + + + +++YTGD++
Sbjct: 110 YAEKNVEDLLDRTLTYGFNYTFEPIEGIKVTFFPAGHILGASMIFIQTQEGSILYTGDFS 169
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
+ A + +++ D++I E
Sbjct: 170 ADRQLTVDKASVPKIRPDVVICE 192
>gi|402301584|ref|ZP_10820890.1| RNA-metabolising metallo-beta-lactamase [Bacillus alcalophilus ATCC
27647]
gi|401723328|gb|EJS96832.1| RNA-metabolising metallo-beta-lactamase [Bacillus alcalophilus ATCC
27647]
Length = 907
Score = 90.1 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 61/201 (30%), Positives = 104/201 (51%), Gaps = 14/201 (6%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LG G EVG SC+ + + I+ D GM M ++ P + A + I++T
Sbjct: 5 ILGGGSEVGASCLHIEVADTNILIDAGMRMHGDE--PLPALGMLEGLA----APEVILVT 58
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ----FTS 122
H H DHIGALP N PIY T PT L +M++D K+L ++R + Q +T
Sbjct: 59 HAHADHIGALPIVHSFYP-NTPIYTTPPTADLMRVMMKDSYKIL-EQRSSLHQTLVPYTE 116
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + + + ++ + +Q+ +++I ++ AGH+LGA MF + G + TGD +
Sbjct: 117 EQVNDLLDSLLLLPANGVLQIG-NVKITSFRAGHILGAVMFLIEGGGQKLFVTGDLSFQA 175
Query: 183 DRHLGAARIDR-LQLDLLITE 202
R + A + + L+ D++I E
Sbjct: 176 GRTIPGAHVPQDLEPDVVIME 196
>gi|387927741|ref|ZP_10130420.1| RNA-metabolising metallo-beta-lactamase [Bacillus methanolicus PB1]
gi|387589885|gb|EIJ82205.1| RNA-metabolising metallo-beta-lactamase [Bacillus methanolicus PB1]
Length = 907
Score = 90.1 bits (222), Expect = 4e-16, Method: Composition-based stats.
Identities = 60/200 (30%), Positives = 101/200 (50%), Gaps = 12/200 (6%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LG G EVG SC+ + + I+ D GM M + P + D D I++T
Sbjct: 5 ILGGGSEVGASCLHINMADTNILVDAGMRM--HGEELLPALGML----DTLRKPDVILVT 58
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ---FTSD 123
H H DHIGALP + + P+Y T PT L +M++D K+L R E +T +
Sbjct: 59 HAHADHIGALPIVHSLFP-DVPMYATPPTADLMKMMMKDSLKILEQRSRETNTLVPYTEE 117
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
+ ++ ++ +++V +++I +Y AGH+LGA MF + ++ TGD +
Sbjct: 118 QVNSLLESLLLFPESGSLRVG-NVKITSYRAGHILGAVMFLFEGEGERLLITGDLSFKAG 176
Query: 184 RHLGAARIDR-LQLDLLITE 202
R + A++ +Q D++I E
Sbjct: 177 RTIPGAQVPHDIQPDVVIME 196
>gi|392409495|ref|YP_006446102.1| putative metal-dependent RNase, consists of a
metallo-beta-lactamase domain and an RNA-binding KH
domain protein [Desulfomonile tiedjei DSM 6799]
gi|390622631|gb|AFM23838.1| putative metal-dependent RNase, consists of a
metallo-beta-lactamase domain and an RNA-binding KH
domain protein [Desulfomonile tiedjei DSM 6799]
Length = 474
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 92/185 (49%), Gaps = 15/185 (8%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I VLG G+E+G + ++ G RI+ DCG+ + + P F + K +D
Sbjct: 7 ISITVLGGGREIGANSYLLDWKGSRILLDCGLDVTKKGYESLPRFDALGK-----RGVDA 61
Query: 63 IVITHFHLDHIGALPFFTEI-CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
+++TH H+DH+G+LP + G +++T P++ L P+ML D K+ V RG+ E +
Sbjct: 62 VIVTHAHIDHVGSLPIIMDAYLGRGRRVHVTVPSKKLIPLMLMDSAKMQVCPRGQSEDYP 121
Query: 122 SDHI--AECMKKVIAV-------DLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAM 172
+ + + K+ A + ++ L + +GH+LGAA G ++
Sbjct: 122 YEWCLDRQSVSKMFASRSVFAAHTFGEKFRIADGLFGSFFPSGHILGAAGVVLWDGGHSL 181
Query: 173 VYTGD 177
VYTGD
Sbjct: 182 VYTGD 186
>gi|392956492|ref|ZP_10322019.1| RNA-metabolising metallo-beta-lactamase [Bacillus macauensis
ZFHKF-1]
gi|391877474|gb|EIT86067.1| RNA-metabolising metallo-beta-lactamase [Bacillus macauensis
ZFHKF-1]
Length = 896
Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 102/200 (51%), Gaps = 12/200 (6%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
VLG G E+G SC+ + + + I+ D GM M + + P I + D I++T
Sbjct: 5 VLGGGNEIGASCLHIQLADQVIVIDAGMRM--HGDQLLPSLGLIEEL----GVPDVILVT 58
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGE---VEQFTSD 123
H H DHIGALP + + P+Y T PT L +M++D K++ R + + +T +
Sbjct: 59 HAHADHIGALPVLHAMFPHV-PMYATPPTIELTTVMMKDSFKIMSMRSEQTHTLPPYTKE 117
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
+A ++ + QT+ + ++I +Y AGH+LGA MF + + TGD +
Sbjct: 118 QVAAVLQAFLPFPANQTLHIGH-VKITSYRAGHILGAVMFLIEGDGEKLFVTGDLSFKAG 176
Query: 184 RHLGAARIDR-LQLDLLITE 202
R + A + + ++ D++I E
Sbjct: 177 RTIPGAVVPKHIEPDVVIME 196
>gi|448313752|ref|ZP_21503464.1| KH-domain/beta-lactamase-domain-containing protein
[Natronolimnobius innermongolicus JCM 12255]
gi|445597062|gb|ELY51140.1| KH-domain/beta-lactamase-domain-containing protein
[Natronolimnobius innermongolicus JCM 12255]
Length = 644
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ RI+ DCG + P ID +V+TH
Sbjct: 187 LGCCREVGRASFIISTPETRILVDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ + E
Sbjct: 245 AHLDHSALIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRTPPYDSEQVRE 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 303 AIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 363 FNGAVNDFPRVETLVLE 379
>gi|295695465|ref|YP_003588703.1| RNA-metabolising metallo-beta-lactamase [Kyrpidia tusciae DSM 2912]
gi|295411067|gb|ADG05559.1| RNA-metabolising metallo-beta-lactamase [Kyrpidia tusciae DSM 2912]
Length = 1001
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 61/195 (31%), Positives = 100/195 (51%), Gaps = 10/195 (5%)
Query: 10 AGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFH 69
G ++G SC+ + D G+ M +D P R++++ D I I +TH H
Sbjct: 7 GGTDIGASCLWFETQTGGWLVDAGVRM--DDRDPLPSLDRLARAGD---RIQGIFVTHAH 61
Query: 70 LDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECM 129
DHIGALP + + + P++MT T LA +ML D KV G+V FT D + +
Sbjct: 62 QDHIGALPLISSLFP-DAPVFMTRATLDLARVMLADALKV-SREEGKVSVFTEDQLNDLW 119
Query: 130 KKVIAVDLKQTVQVDKDLQIRAYYAGHVLGA-AMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
+V + + + +Q+ Y AGH+LGA ++ + + +++ TGD+++TP R L
Sbjct: 120 PRVRVMGQDKVFGWN-GMQVATYSAGHILGAVSIGFVTEAEGSVLVTGDFSVTPGRLLPG 178
Query: 189 ARIDR-LQLDLLITE 202
R+ R D +ITE
Sbjct: 179 LRMPRGSAYDAVITE 193
>gi|408404949|ref|YP_006862932.1| beta-lactamase [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408365545|gb|AFU59275.1| beta-lactamase domain protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 628
Score = 90.1 bits (222), Expect = 5e-16, Method: Composition-based stats.
Identities = 51/174 (29%), Positives = 87/174 (50%), Gaps = 9/174 (5%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
+ LG EVG+SC+++T + +++ DCG+++ D R + ID +V+
Sbjct: 189 MTLGGFAEVGRSCMLLTTSESKVLLDCGLNIYAKD--SLAAMPRFDAAGIGMEEIDAVVL 246
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
+H H+DH G LP + GY+GP+Y T PT L ++ DY V R G ++ I
Sbjct: 247 SHAHMDHTGFLPALFKY-GYSGPVYCTEPTLLLMSMLQRDY----VRRSGNAALYSEKDI 301
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKV--GDSAMVYTGD 177
+ I + + D+++ +GH+LG+ + + GD +VYTGD
Sbjct: 302 DSAVIHTITLTHGIVTDISPDVKLVLSNSGHILGSTSVHLHIGNGDHNLVYTGD 355
>gi|433638879|ref|YP_007284639.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Halovivax ruber XH-70]
gi|433290683|gb|AGB16506.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Halovivax ruber XH-70]
Length = 645
Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P ID +V+T
Sbjct: 186 TLGCSREVGRAAFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSALIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRTPPYESEQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|383621866|ref|ZP_09948272.1| KH-domain/beta-lactamase-domain-containing protein [Halobiforma
lacisalsi AJ5]
gi|448702794|ref|ZP_21700151.1| KH-domain/beta-lactamase-domain-containing protein [Halobiforma
lacisalsi AJ5]
gi|445776887|gb|EMA27863.1| KH-domain/beta-lactamase-domain-containing protein [Halobiforma
lacisalsi AJ5]
Length = 644
Score = 89.7 bits (221), Expect = 6e-16, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ RI+ DCG + P ID +V+TH
Sbjct: 187 LGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEALGAGPETIDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ + E
Sbjct: 245 AHLDHSALIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRTPPYDSEQVRE 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 303 AIKHTIPLEYGDVTDIAPDVKLTLHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 363 FNGAVNDFPRVETLVLE 379
>gi|448473369|ref|ZP_21601511.1| beta-lactamase [Halorubrum aidingense JCM 13560]
gi|445818881|gb|EMA68730.1| beta-lactamase [Halorubrum aidingense JCM 13560]
Length = 641
Score = 89.4 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA-IDCIVIT 66
LG +EVG++ +++ RI+ DCG Y ++ ++ A ID +++T
Sbjct: 187 LGCCREVGRAAFILSTPETRILIDCGDKPGAEGEVPY---LQVPEALGAGAATIDAVILT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH LP + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 244 HAHLDHSALLPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDVAA-KDGRTPPYESSQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+++ + +GD + ++GD + R
Sbjct: 302 EAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSSVTHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|167042966|gb|ABZ07680.1| putative Metallo-beta-lactamase superfamily protein [uncultured
marine crenarchaeote HF4000_ANIW137N18]
Length = 422
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 14/197 (7%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
VLGA EVG+S +V +G ++ D G+ M + P + K D +D +IT
Sbjct: 5 VLGAANEVGRSGFLVNCDGTNLLLDYGV-MFSRRRDEPPSYPLHVKPKD----VDATIIT 59
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH G +P G N +Y T PT L+ +++ED K+ ++ F + H+
Sbjct: 60 HAHLDHSGCVPSL--FNGGNTSVYCTPPTLDLSMLLIEDMLKIEKNKH----SFHNGHVN 113
Query: 127 ECMKKVIAVDLKQTVQV-DKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
++ + K+ V+V + ++R+ +GHV+G + + + + YTGD N R
Sbjct: 114 SMLRNSKEIGFKEPVKVGNATFELRS--SGHVIGGSTVLVEADNKRLFYTGDINPNGSRM 171
Query: 186 LGAARIDRLQLDLLITE 202
L A +D +D+LITE
Sbjct: 172 LPKADLDIGDIDILITE 188
>gi|448337182|ref|ZP_21526264.1| KH-domain/beta-lactamase-domain protein [Natrinema pallidum DSM
3751]
gi|445626528|gb|ELY79871.1| KH-domain/beta-lactamase-domain protein [Natrinema pallidum DSM
3751]
Length = 644
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG D + P ID +V+T
Sbjct: 186 TLGCCREVGRASFILSTPETRILIDCGDKPGAED--EVPYLHAPEALGAGPQTIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR + ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSALIPLLFKY-GYDGPIYCTEPTRDMMGLLTLDYLDVAA-KEGRSPPYESEQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|119576640|gb|EAW56236.1| cleavage and polyadenylation specific factor 3-like, isoform CRA_d
[Homo sapiens]
Length = 207
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 50/60 (83%)
Query: 84 GYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQV 143
GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +CMKKV+AV L QTVQV
Sbjct: 3 GYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQV 62
>gi|448340516|ref|ZP_21529487.1| KH-domain/beta-lactamase-domain protein [Natrinema gari JCM 14663]
gi|445629949|gb|ELY83219.1| KH-domain/beta-lactamase-domain protein [Natrinema gari JCM 14663]
Length = 644
Score = 89.4 bits (220), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 97/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG D + P ID +V+T
Sbjct: 186 TLGCCREVGRASFILSTPETRILIDCGDKPGAED--EVPYLHAPEALGAGPQTIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR + ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSALIPLLFKY-GYDGPIYCTEPTRDMMGLLTLDYLDVAA-KEGRSPPYESEQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|448406221|ref|ZP_21572743.1| mRNA 3'-end processing factor-like protein [Halosimplex
carlsbadense 2-9-1]
gi|445678060|gb|ELZ30555.1| mRNA 3'-end processing factor-like protein [Halosimplex
carlsbadense 2-9-1]
Length = 640
Score = 89.4 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ R++ DCG + P ++ID +V+TH
Sbjct: 187 LGCCREVGRAAFLLSTPETRVLIDCGDKPGAEG--EVPYLQAPEALAAGPDSIDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S + +
Sbjct: 245 AHLDHSALIPILFKY-GYDGPIYATEPTRDLMGLLQLDYLDV-ASKEGRTPPYDSSMVRK 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDRH 185
+K I V+ + D+++ + AGH+LG+A+ + VG+ + ++GD + R
Sbjct: 303 ALKHTIPVEYGNVTDIAPDVKLTMHNAGHILGSAVSHFHVGEGFYNVAFSGDIHYRDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
L A D +++ L+ E
Sbjct: 363 LDGAVNDFPRVETLVLE 379
>gi|336252222|ref|YP_004595329.1| KH-domain/beta-lactamase-domain-containing protein [Halopiger
xanaduensis SH-6]
gi|335336211|gb|AEH35450.1| KH-domain/beta-lactamase-domain protein [Halopiger xanaduensis
SH-6]
Length = 644
Score = 89.4 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 56/197 (28%), Positives = 96/197 (48%), Gaps = 6/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG++ +++ RI+ DCG + P ID +V+TH
Sbjct: 187 LGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEAFGAGPETIDAVVLTH 244
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ + E
Sbjct: 245 AHLDHSAFIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRTPPYDSEQVRE 302
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
+K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 303 AIKHTIPLEYGDVTDIAPDVKLTLHNAGHILGSAVSHFHIGDGLYNVCFSGDIHYEDTRL 362
Query: 186 LGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 363 FNGAVNDFPRVETLVLE 379
>gi|118576728|ref|YP_876471.1| cleavage and polyadenylation specificity factor/metal-dependent
RNase [Cenarchaeum symbiosum A]
gi|118195249|gb|ABK78167.1| cleavage and polyadenylation specificity factor/metal-dependent
RNase [Cenarchaeum symbiosum A]
Length = 645
Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 99/203 (48%), Gaps = 8/203 (3%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDHRQYPDFSRISKSCDFNNAID 61
I LG +VG+SC++++ +++ DCG++ A + YP + D +D
Sbjct: 188 ISLTALGGFGQVGRSCMLLSTLDSKVLVDCGVNPGAAHPSESYPRLDWAGITLD---DLD 244
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
+VI H HLDH G LP + GY GPIY T PT + ++ D KV +G V +
Sbjct: 245 AVVIGHAHLDHTGFLPVLAK-YGYRGPIYCTEPTLPMMNLIQLDAIKV-ATAQGRVPVYA 302
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM--FYAKVGDSAMVYTGDYN 179
+ + M++ I + + D+++ AGH+LG+A+ F+ GD VY+GD
Sbjct: 303 ERDVRQIMRQAITLPYGTVTDISPDIKLVLANAGHILGSALCHFHIGSGDHNFVYSGDIK 362
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
AA + +++ L+ E
Sbjct: 363 FGKSILFEAASWNFPRVETLLIE 385
>gi|448446631|ref|ZP_21590853.1| beta-lactamase [Halorubrum saccharovorum DSM 1137]
gi|445683775|gb|ELZ36165.1| beta-lactamase [Halorubrum saccharovorum DSM 1137]
Length = 641
Score = 89.4 bits (220), Expect = 8e-16, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA-IDCIVIT 66
LG +EVG++ +++ RI+ DCG Y ++ ++ A +D +V+T
Sbjct: 187 LGCCREVGRAAFILSTPETRILIDCGDKPGAEGEVPY---LQVPEALGAGAATLDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 244 HAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDVAA-KDGRTPPYESSQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|385806125|ref|YP_005842523.1| putative exonuclease [Fervidicoccus fontis Kam940]
gi|383795988|gb|AFH43071.1| putative exonuclease [Fervidicoccus fontis Kam940]
Length = 428
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 15/197 (7%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYP-DFSRISKSCDFNNAIDCIVI 65
+LG+G+EVG++ + V N + ++ D G++ ND+ P S I +D +V+
Sbjct: 11 ILGSGKEVGRAAISVEYNNRSVLLDYGVNFDENDNPVMPLHISPIK--------LDGVVL 62
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
+H HLDHIGA P + T TR LA +MLED+ K+ G F + +
Sbjct: 63 SHVHLDHIGAAPLL--YSSVKPKAFSTRVTRHLARLMLEDFLKL----SGYYLDFEINEV 116
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
+ + V V++ + + Y++GH+ G+ D +++YT D N +
Sbjct: 117 NSLLSSIQDVKAGDFVKLSEFFSLDFYHSGHIPGSLSVKVSTPDGSLIYTADINSIDTKL 176
Query: 186 LGAARIDRLQLDLLITE 202
+ +A+ID + D+LI E
Sbjct: 177 VESAKIDGAEADVLIIE 193
>gi|253742318|gb|EES99157.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia intestinalis ATCC 50581]
Length = 620
Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 67/223 (30%), Positives = 98/223 (43%), Gaps = 23/223 (10%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGK-RIMFDCGMHMAYNDHRQYPDFSRI---SKSCDFNN 58
I + LG +G SC +V + K + DCG+ + D + P F
Sbjct: 10 IVVIPLGMSPRIGNSCYLVIVGSKVSFLLDCGLRTSAPDGERVPSFKLKCLQDMGYSLER 69
Query: 59 AIDCIVITHFHLDHIGALPF-FTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEV 117
+D I+I+H H DH GALPF F+ +N P+Y T T+ L P M DY +V + +
Sbjct: 70 DLDFIIISHAHFDHSGALPFLFSLFPNFNRPVYTTEATKFLLPQMYADYDRVFDNTNQSM 129
Query: 118 EQFTSD-HIAECMKKVIAV--DLKQTVQVDKDLQ------------IRAYYAGHVLGAAM 162
+ AE ++I++ K D Q I AGH++GA +
Sbjct: 130 SKLEKQARTAEVRSRIISLLRTYKNNTNFVADCQPSHDGKPVPETIINFSNAGHIIGAVI 189
Query: 163 FYAKV-GDSAMVYTGDYNMTPDRHLGAARIDRLQL--DLLITE 202
V G + +VYTGDYN T L A + + D+LITE
Sbjct: 190 TTVTVAGHAKLVYTGDYNTTARTTLPGATLPSCAIGADILITE 232
>gi|448491588|ref|ZP_21608428.1| beta-lactamase [Halorubrum californiensis DSM 19288]
gi|445692588|gb|ELZ44759.1| beta-lactamase [Halorubrum californiensis DSM 19288]
Length = 641
Score = 89.0 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA-IDCIVIT 66
LG +EVG++ +++ RI+ DCG Y ++ ++ A +D +++T
Sbjct: 187 LGCCREVGRAAFILSTPETRILIDCGDKPGAEGEVPY---LQVPEALGAGAATLDAVILT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 244 HAHLDHSALVPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDVAA-KDGRTPPYESSQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
E +K I ++ V D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHTIPLEYGDVTDVAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|358333242|dbj|GAA51791.1| cleavage and polyadenylation specificity factor subunit 3
[Clonorchis sinensis]
Length = 697
Score = 89.0 bits (219), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 82/141 (58%), Gaps = 4/141 (2%)
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FT 121
V +FHLDH G LP+ G YMT+ T+A+ +L D+ +V + G +Q +T
Sbjct: 10 VAFNFHLDHCGGLPYLLLKTGVRAKCYMTHATKAIYRYLLADFVRV-SNSSGVPDQSLYT 68
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
I + ++ +D Q ++V+ ++ A++AGHVLGAAMF ++ ++YTGD++
Sbjct: 69 DRDIIASLDRIDTLDFHQELEVN-GIKFTAFHAGHVLGAAMFLIEIAGVKVLYTGDFSRQ 127
Query: 182 PDRHLGAARIDRLQLDLLITE 202
DRHL A I ++ D+LITE
Sbjct: 128 EDRHLMCAEIPHVRPDVLITE 148
>gi|219851430|ref|YP_002465862.1| beta-lactamase [Methanosphaerula palustris E1-9c]
gi|219545689|gb|ACL16139.1| beta-lactamase domain protein [Methanosphaerula palustris E1-9c]
Length = 630
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 103/206 (50%), Gaps = 15/206 (7%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQ----YPDFSRISKSCDFNN 58
+ LG +EVG++ +++ +++ DCG N++ P+ +S+
Sbjct: 179 VRVTTLGCCREVGRAAFLLSTPESKVLIDCGEKPDNNNNGTPYLYVPEIHPLSQ------ 232
Query: 59 AIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVE 118
+D +V+TH HLDH +P + GY GP+Y T PTR LA ++ DY +V+ ++
Sbjct: 233 -LDAVVLTHAHLDHCALIPLLYK-YGYEGPVYSTPPTRDLASMLQLDYLEVIRKEDKKI- 289
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTG 176
+TS + +K I ++ + D+++ + AGH+LG+A+ + +GD + +TG
Sbjct: 290 PYTSADVKSYLKHSIVLNYGSVTDIAPDIKLTFHNAGHILGSAIAHFHLGDGLYNIAFTG 349
Query: 177 DYNMTPDRHLGAARIDRLQLDLLITE 202
D+N R A +L+ L E
Sbjct: 350 DFNYGKSRLFNPAVSTFPRLEALFME 375
>gi|448302982|ref|ZP_21492932.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
sulfidifaciens JCM 14089]
gi|445593989|gb|ELY48156.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
sulfidifaciens JCM 14089]
Length = 645
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P ID +V+T
Sbjct: 186 TLGCCREVGRASFIISTPETRILVDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSALIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRTPPYESEQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYDDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|374636870|ref|ZP_09708413.1| RNA-metabolising metallo-beta-lactamase [Methanotorris formicicus
Mc-S-70]
gi|373557613|gb|EHP84014.1| RNA-metabolising metallo-beta-lactamase [Methanotorris formicicus
Mc-S-70]
Length = 419
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 24/194 (12%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G ++G SC+ + +I+ DCGM P + I K + +D +V++H
Sbjct: 8 GGCHQIGMSCIEIDTKKSKILLDCGMD---------PTNNAIPK---VDENVDAVVVSHA 55
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GA+PF+ IY T PT L I +D + + + + I
Sbjct: 56 HLDHCGAIPFYK-----FRKIYCTTPTADLMYITWKDTLNL-------SKSYKEEDIQRS 103
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
+ ++ ++ Q+ +D+ ++ Y AGH+LG+A + ++YTGD N TP R L
Sbjct: 104 LNNTEVLNYREERQITEDITLKFYNAGHILGSASICLDIDGKKILYTGDINETPTRTLLP 163
Query: 189 ARIDRLQLDLLITE 202
A D ++D+LI E
Sbjct: 164 ADKDIDEIDVLIIE 177
>gi|196229668|ref|ZP_03128532.1| beta-lactamase domain protein [Chthoniobacter flavus Ellin428]
gi|196225994|gb|EDY20500.1| beta-lactamase domain protein [Chthoniobacter flavus Ellin428]
Length = 284
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 92/203 (45%), Gaps = 19/203 (9%)
Query: 13 EVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDH 72
E+G +C + + GKRI+ D G+H ++ PDFSR+ + D I+++H H DH
Sbjct: 14 EIGANCYCLDLAGKRIVLDSGLHPRFDGTAALPDFSRLP-----DGTADAIILSHAHQDH 68
Query: 73 IGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRR----GEVEQFTSDHIAEC 128
+G++P P++MT TR L+ +ML + V+ +R E FT +
Sbjct: 69 VGSMPVLMR-RQPQAPVFMTEATRLLSDVMLHNSVNVMTKKRDEGITEYPLFTHREVDVA 127
Query: 129 MKKVIAVDLKQTVQV---------DKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
K+ V L V D +L + AGH+LG+ + + YTGD
Sbjct: 128 FKRWRPVPLHTRFDVTGERLLPSEDAELSFEFFDAGHILGSVGTLIRAQGRKIFYTGDVQ 187
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
+ A+ +LD+LI E
Sbjct: 188 FDDQTIMQGAQFPEEELDVLIIE 210
>gi|284173343|ref|ZP_06387312.1| mRNA 3'-end processing factor, putative [Sulfolobus solfataricus
98/2]
gi|384433838|ref|YP_005643196.1| beta-lactamase [Sulfolobus solfataricus 98/2]
gi|261601992|gb|ACX91595.1| beta-lactamase domain protein [Sulfolobus solfataricus 98/2]
Length = 422
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 13/188 (6%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LG G+EVG+S + V + I+ D G++ D+ +P + + V++
Sbjct: 7 ILGGGREVGRSAIEVGNSDGSIILDYGVNFDEKDNPNFP-------LQEMPGKVKGFVVS 59
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDHIGALP + +I N +Y T TR + ML+D+ K+ G + +
Sbjct: 60 HAHLDHIGALPIY-QIGSLNTKVYGTVATRIITETMLKDFLKL----SGAKIPYEWVEVR 114
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ M +A+ + V++D L++ Y AGH+ G+++ + +TGD N+T + +
Sbjct: 115 KTMDNFMAIGYGEEVEID-SLKVSLYNAGHIPGSSIIKVSSEKGVIAFTGDINLTETKLM 173
Query: 187 GAARIDRL 194
A I+ +
Sbjct: 174 KPAEIENI 181
>gi|448448791|ref|ZP_21591376.1| beta-lactamase [Halorubrum litoreum JCM 13561]
gi|445814265|gb|EMA64232.1| beta-lactamase [Halorubrum litoreum JCM 13561]
Length = 641
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA-IDCIVIT 66
LG +EVG++ +++ RI+ DCG Y ++ ++ A +D +++T
Sbjct: 187 LGCCREVGRAAFILSTPETRILIDCGDKPGAEGEVPY---LQVPEALGAGAATLDAVILT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 244 HAHLDHSALVPLLYKY-GYDGPIYTTEPTRDLMGLLTLDYLDVAA-KDGRTPPYESAQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
E +K I ++ V D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHTIPLEYGDVTDVAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|448424329|ref|ZP_21582379.1| beta-lactamase [Halorubrum terrestre JCM 10247]
gi|448506359|ref|ZP_21614469.1| beta-lactamase [Halorubrum distributum JCM 9100]
gi|448524796|ref|ZP_21619438.1| beta-lactamase [Halorubrum distributum JCM 10118]
gi|445682322|gb|ELZ34741.1| beta-lactamase [Halorubrum terrestre JCM 10247]
gi|445700009|gb|ELZ52027.1| beta-lactamase [Halorubrum distributum JCM 9100]
gi|445700162|gb|ELZ52173.1| beta-lactamase [Halorubrum distributum JCM 10118]
Length = 641
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA-IDCIVIT 66
LG +EVG++ +++ RI+ DCG Y ++ ++ A +D +++T
Sbjct: 187 LGCCREVGRAAFILSTPETRILIDCGDKPGAEGEVPY---LQVPEALGAGAATLDAVILT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 244 HAHLDHSALVPLLYKY-GYDGPIYTTEPTRDLMGLLTLDYLDVAA-KDGRTPPYESAQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
E +K I ++ V D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHTIPLEYGDVTDVAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|15897318|ref|NP_341923.1| mRNA 3'-end processing factor [Sulfolobus solfataricus P2]
gi|13813531|gb|AAK40713.1| mRNA 3'-end processing factor, putative [Sulfolobus solfataricus
P2]
Length = 492
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 52/188 (27%), Positives = 94/188 (50%), Gaps = 13/188 (6%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LG G+EVG+S + V + I+ D G++ D+ +P + + V++
Sbjct: 77 ILGGGREVGRSAIEVGNSDGSIILDYGVNFDEKDNPNFP-------LQEMPGKVKGFVVS 129
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDHIGALP + +I N +Y T TR + ML+D+ K+ G + +
Sbjct: 130 HAHLDHIGALPIY-QIGSLNTKVYGTVATRIITETMLKDFLKL----SGAKIPYEWVEVR 184
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186
+ M +A+ + V++D L++ Y AGH+ G+++ + +TGD N+T + +
Sbjct: 185 KTMDNFMAIGYGEEVEID-SLKVSLYNAGHIPGSSIIKVSSEKGVIAFTGDINLTETKLM 243
Query: 187 GAARIDRL 194
A I+ +
Sbjct: 244 KPAEIENI 251
>gi|404330601|ref|ZP_10971049.1| beta-lactamase [Sporolactobacillus vineae DSM 21990 = SL153]
Length = 902
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 92/188 (48%), Gaps = 11/188 (5%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LG G E+G SC + I G ++ D GM + + D D + D + I++T
Sbjct: 5 ILGGGNEIGASCTYIQIGGTSLIVDAGMRV-HGD-----DVMPATGMLDQLDKPAAILVT 58
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ---FTSD 123
H H DHIGALP I + PI+ T PT L IM+ D K++ R + +T +
Sbjct: 59 HAHADHIGALPVIHRIYP-DVPIFATPPTADLMQIMMHDSFKIMKQRCQDTRTLIPYTKE 117
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
+ E ++ V +++ DL +R + AGH+LGA MF + G ++ +GD +
Sbjct: 118 QMEETLRAVRLFPASGSIRFG-DLSVRLHRAGHILGAVMFVLEGGGEKLLVSGDLSFNAG 176
Query: 184 RHLGAARI 191
R + A +
Sbjct: 177 RTIPGAEV 184
>gi|448435791|ref|ZP_21586859.1| beta-lactamase [Halorubrum tebenquichense DSM 14210]
gi|445683226|gb|ELZ35626.1| beta-lactamase [Halorubrum tebenquichense DSM 14210]
Length = 641
Score = 88.6 bits (218), Expect = 1e-15, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA-IDCIVIT 66
LG +EVG++ +++ RI+ DCG Y ++ ++ A +D +++T
Sbjct: 187 LGCCREVGRAAFILSTPETRILIDCGDKPGAEGEVPY---LQVPEALGAGAATLDAVILT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 244 HAHLDHSALVPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDVAA-KDGRTPPYESAQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
E +K I ++ V D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHTIPLEYGDVTDVAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|46579941|ref|YP_010749.1| metallo-beta-lactamase [Desulfovibrio vulgaris str. Hildenborough]
gi|120602645|ref|YP_967045.1| beta-lactamase domain-containing protein [Desulfovibrio vulgaris
DP4]
gi|387153617|ref|YP_005702553.1| RNA-metabolising metallo-beta-lactamase [Desulfovibrio vulgaris
RCH1]
gi|46449357|gb|AAS96008.1| metallo-beta-lactamase family protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120562874|gb|ABM28618.1| beta-lactamase domain protein [Desulfovibrio vulgaris DP4]
gi|311234061|gb|ADP86915.1| RNA-metabolising metallo-beta-lactamase [Desulfovibrio vulgaris
RCH1]
Length = 536
Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 91/188 (48%), Gaps = 23/188 (12%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA Q V SC ++ NG R DCGMH + + D + I + D I ++TH
Sbjct: 6 LGAAQTVTGSCYMIEANGVRFAIDCGMHQGNTEIEKRNDDTEIYRPSD----IAFFLVTH 61
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLED----------YRKVLVDRRGEV 117
H+DH G LP T G+ GPIY T PT L IML+D ++ + R G +
Sbjct: 62 AHIDHTGLLPAMTR-NGFTGPIYCTEPTADLLGIMLQDSAHIQEMEAEWQSRKLSRNGRI 120
Query: 118 EQ----FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA-- 171
++ +T++ + + VD + + +++ AGH+LG+A +V ++
Sbjct: 121 KKVEPLYTTEDATRAAEMLRPVDYGNSFEPSPGIRVTYKDAGHILGSAFLELEVTENGRP 180
Query: 172 --MVYTGD 177
+V++GD
Sbjct: 181 TRLVFSGD 188
>gi|448529176|ref|ZP_21620435.1| beta-lactamase [Halorubrum hochstenium ATCC 700873]
gi|445709609|gb|ELZ61435.1| beta-lactamase [Halorubrum hochstenium ATCC 700873]
Length = 641
Score = 88.2 bits (217), Expect = 2e-15, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA-IDCIVIT 66
LG +EVG++ +++ RI+ DCG Y ++ ++ A +D +++T
Sbjct: 187 LGCCREVGRAAFILSTPETRILIDCGDKPGAEGEVPY---LQVPEALGAGAATLDAVILT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 244 HAHLDHSALVPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDVAA-KDGRTPPYESAQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
E +K I ++ V D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHTIPLEYGDVTDVAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|448298653|ref|ZP_21488681.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
tibetense GA33]
gi|445591323|gb|ELY45529.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
tibetense GA33]
Length = 645
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P ID +V+T
Sbjct: 186 TLGCCREVGRAAFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSALIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRAPPYESEQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVCFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGATNDFPRVETLVLE 379
>gi|448306255|ref|ZP_21496164.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
bangense JCM 10635]
gi|445598669|gb|ELY52724.1| KH-domain/beta-lactamase-domain-containing protein [Natronorubrum
bangense JCM 10635]
Length = 645
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P ID +V+T
Sbjct: 186 TLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSALIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRAPPYESEQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYDDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|284165869|ref|YP_003404148.1| KH-domain/beta-lactamase-domain-containing protein [Haloterrigena
turkmenica DSM 5511]
gi|284015524|gb|ADB61475.1| KH-domain/beta-lactamase-domain protein [Haloterrigena turkmenica
DSM 5511]
Length = 644
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P ID +V+T
Sbjct: 186 TLGCCREVGRASFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSALIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRAPPYESEQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVME 379
>gi|432331211|ref|YP_007249354.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Methanoregula formicicum SMSP]
gi|432137920|gb|AGB02847.1| universal archaeal KH-domain/beta-lactamase-domain protein
[Methanoregula formicicum SMSP]
Length = 636
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/201 (26%), Positives = 101/201 (50%), Gaps = 14/201 (6%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQY---PDFSRISKSCDFNNAIDCI 63
LG +EVG++ +++ +++ DCG Y P+ +S ++D +
Sbjct: 190 TLGCCREVGRAAFLLSTPDSKVLIDCGEKPDNAGATPYIYVPEIYPLS-------SLDAV 242
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
V+TH HLDH +P + GY GP+Y T PTR L+ ++ DY V +++ G ++S+
Sbjct: 243 VLTHAHLDHCALVPLLYKY-GYEGPVYSTPPTRDLSAMLQLDYLDV-INKEGRKVPYSSN 300
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMT 181
+ +K + ++ + D+++ + AGH+LG+A+ + +GD + +TGD+N
Sbjct: 301 EVKTYIKHSVTLNYGSVTDIAPDIKLTFHNAGHILGSAIAHFHLGDGMYNIAFTGDFNYA 360
Query: 182 PDRHLGAARIDRLQLDLLITE 202
R A +L+ L E
Sbjct: 361 KSRLFNPAINQFPRLEALFME 381
>gi|452208263|ref|YP_007488385.1| beta-lactamase domain protein [Natronomonas moolapensis 8.8.11]
gi|452084363|emb|CCQ37702.1| beta-lactamase domain protein [Natronomonas moolapensis 8.8.11]
Length = 639
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/198 (28%), Positives = 95/198 (47%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ ++ R++ DCG Y + + ID +V+T
Sbjct: 186 TLGCCREVGRAAFILNTPETRVLIDCGDKPGAEGEVPYLQVPEALGAG--ASKIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 244 HAHLDHSALVPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRTPPYDSAQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + DL++ + AGH+LG+A+ + VGD + ++GD + R
Sbjct: 302 EAIKHCIPIEYGDVTDIAPDLKLTFHNAGHILGSAVTHFHVGDGLYNVAFSGDIHYDDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVME 379
>gi|448455937|ref|ZP_21594869.1| beta-lactamase [Halorubrum lipolyticum DSM 21995]
gi|445813156|gb|EMA63138.1| beta-lactamase [Halorubrum lipolyticum DSM 21995]
Length = 641
Score = 87.8 bits (216), Expect = 2e-15, Method: Composition-based stats.
Identities = 54/198 (27%), Positives = 99/198 (50%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA-IDCIVIT 66
LG +EVG++ +++ R++ DCG Y ++ ++ A +D +V+T
Sbjct: 187 LGCCREVGRASFILSTPETRVLIDCGDKPGAEGEVPY---LQVPEALGAGAATLDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 244 HAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDVAA-KEGRTPPYESSQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
+ +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 DAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|305663939|ref|YP_003860227.1| beta-lactamase [Ignisphaera aggregans DSM 17230]
gi|304378508|gb|ADM28347.1| beta-lactamase domain protein [Ignisphaera aggregans DSM 17230]
Length = 424
Score = 87.8 bits (216), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 104/204 (50%), Gaps = 16/204 (7%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVT--INGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNN 58
M I+ VLGAG+EVG++ + V + ++ D G+ D +P SK
Sbjct: 1 MPIEITVLGAGREVGRAAIHVKNLKDESAVLLDYGVSFDEEDRPLFPLAVSPSK------ 54
Query: 59 AIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVE 118
+ +++TH HLDH+GA+PF + M+ T L+ +M+ED K+ G
Sbjct: 55 -LKAVLVTHAHLDHVGAVPFLY--ISARPLLIMSRLTAKLSKLMIEDMIKI----SGYFL 107
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDY 178
+ + ++ V +++ +T+++D +++I + AGH+ G+ MF +G+ +++YTGD
Sbjct: 108 PYEYPELIAMLENVKPIEIGETLEID-NIRIESINAGHIPGSIMFKITMGEKSILYTGDI 166
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
N R + + + D+LI E
Sbjct: 167 NTIDTRLIKGLKPQNIDADILIIE 190
>gi|448346325|ref|ZP_21535211.1| KH-domain/beta-lactamase-domain protein [Natrinema altunense JCM
12890]
gi|445632914|gb|ELY86120.1| KH-domain/beta-lactamase-domain protein [Natrinema altunense JCM
12890]
Length = 644
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P ID +V+T
Sbjct: 186 TLGCCREVGRASFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSALIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRSPPYESEQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|268323698|emb|CBH37286.1| conserved hypothetical protein, RNA-metabolising
metallo-beta-lactamase family [uncultured archaeon]
Length = 628
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 58/174 (33%), Positives = 95/174 (54%), Gaps = 13/174 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LG +EVG++ +++ RI+ DCG+ + + P+ + IS ID +VI
Sbjct: 186 LGGCREVGRNAFMLSTPETRILIDCGVSVGSEGMPYLYVPEVTPISN-------IDAVVI 238
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH G +P + GY+GPIY+T PTR L ++L DY +V R G+ + S I
Sbjct: 239 THAHLDHSGLVPLLY-LYGYDGPIYITQPTRDLMALLLLDYLEVSA-REGKKIPYKSALI 296
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGD 177
+ ++ I + + D+++ Y AGH+LG+++ Y VG+ + +TGD
Sbjct: 297 RDAIRHTIPLKYGDVTDISPDVKLTLYNAGHILGSSIAYFHVGNGLYNVAFTGD 350
>gi|448479273|ref|ZP_21604125.1| beta-lactamase [Halorubrum arcis JCM 13916]
gi|445822551|gb|EMA72315.1| beta-lactamase [Halorubrum arcis JCM 13916]
Length = 641
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 56/198 (28%), Positives = 99/198 (50%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA-IDCIVIT 66
LG +EVG++ +++ RI+ DCG Y ++ ++ A +D +V+T
Sbjct: 187 LGCCREVGRAAFILSTPETRILIDCGDKPGAEGEVPY---LQVPEALGAGAATLDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 244 HAHLDHSALVPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDVAA-KDGRTPPYESAQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
+ +K I ++ V D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 DAIKHTIPLEYGDVTDVAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|154150928|ref|YP_001404546.1| beta-lactamase domain-containing protein [Methanoregula boonei 6A8]
gi|153999480|gb|ABS55903.1| beta-lactamase domain protein [Methanoregula boonei 6A8]
Length = 639
Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 102/205 (49%), Gaps = 14/205 (6%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQY---PDFSRISKSCDFNNA 59
+ LG +EVG++ ++T R++ DCG Y P+ +++
Sbjct: 189 VRVTTLGCCREVGRAAFLLTTPDSRVLIDCGEKPDNAGGTPYLYVPEIHPLAQ------- 241
Query: 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
+D +V+TH HLDH +P + GY GP+Y T PTR L+ ++ DY V +++
Sbjct: 242 LDAVVLTHAHLDHCALIPLLYK-YGYEGPVYSTPPTRDLSAMLQLDYLDV-INKEDRKIP 299
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGD 177
++S+ + ++ I ++ + D+++ + AGH+LG+A+ + +GD + +TGD
Sbjct: 300 YSSNEVKTYIRHSITLNYGSVTDIAPDIKLTFHNAGHILGSAIAHFHIGDGLYNIAFTGD 359
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
+N + R A +L+ L E
Sbjct: 360 FNYSKSRLFNPAINQFPRLEALFME 384
>gi|222479397|ref|YP_002565634.1| beta-lactamase [Halorubrum lacusprofundi ATCC 49239]
gi|222452299|gb|ACM56564.1| beta-lactamase domain protein [Halorubrum lacusprofundi ATCC 49239]
Length = 641
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 54/198 (27%), Positives = 99/198 (50%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA-IDCIVIT 66
LG +EVG++ +++ R++ DCG Y ++ ++ A +D +V+T
Sbjct: 187 LGCCREVGRAAFILSTPETRVLIDCGDKPGAEGEVPY---LQVPEALGAGAATLDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 244 HAHLDHSAFVPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDVAA-KEGRTPPYESSQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+++ + +GD + ++GD + R
Sbjct: 302 EAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSSVTHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|448470473|ref|ZP_21600480.1| beta-lactamase [Halorubrum kocurii JCM 14978]
gi|445808037|gb|EMA58114.1| beta-lactamase [Halorubrum kocurii JCM 14978]
Length = 641
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 54/198 (27%), Positives = 99/198 (50%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA-IDCIVIT 66
LG +EVG++ +++ R++ DCG Y ++ ++ A +D +V+T
Sbjct: 187 LGCCREVGRAAFILSTPETRVLIDCGDKPGAEGEVPY---LQVPEALGAGAATLDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 244 HAHLDHSALIPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDVAA-KDGRTPPYESSQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
+ +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 DAIKHTIPLEYGDVTDIAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|448317597|ref|ZP_21507147.1| KH-domain/beta-lactamase-domain-containing protein [Natronococcus
jeotgali DSM 18795]
gi|445602988|gb|ELY56958.1| KH-domain/beta-lactamase-domain-containing protein [Natronococcus
jeotgali DSM 18795]
Length = 644
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P ID +V+T
Sbjct: 186 TLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEALGAGAQTIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSALIPLLFK-YGYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRTPPYDSEMVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHTIPLEYGDVTDIAPDVKLTLHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYDDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|448502560|ref|ZP_21612673.1| beta-lactamase [Halorubrum coriense DSM 10284]
gi|445694055|gb|ELZ46190.1| beta-lactamase [Halorubrum coriense DSM 10284]
Length = 641
Score = 87.0 bits (214), Expect = 4e-15, Method: Composition-based stats.
Identities = 55/198 (27%), Positives = 99/198 (50%), Gaps = 8/198 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA-IDCIVIT 66
LG +EVG++ +++ RI+ DCG Y ++ ++ A +D +++T
Sbjct: 187 LGCCREVGRAAFILSTPETRILIDCGDKPGAEGEVPY---LQVPEALGAGAATLDAVILT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S +
Sbjct: 244 HAHLDHSALVPLLFKY-GYDGPIYTTEPTRDLMGLLTLDYLDVAA-KDGRTPPYESAQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
+ +K I ++ V D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 DAIKHTIPLEYGDVTDVAPDVKLTFHNAGHILGSAVTHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|429192458|ref|YP_007178136.1| KH-domain/beta-lactamase-domain-containing protein
[Natronobacterium gregoryi SP2]
gi|448325869|ref|ZP_21515248.1| KH-domain/beta-lactamase-domain-containing protein
[Natronobacterium gregoryi SP2]
gi|429136676|gb|AFZ73687.1| KH-domain/beta-lactamase-domain protein [Natronobacterium gregoryi
SP2]
gi|445614014|gb|ELY67697.1| KH-domain/beta-lactamase-domain-containing protein
[Natronobacterium gregoryi SP2]
Length = 644
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P ID +V+T
Sbjct: 186 TLGCCREVGRAAFILSTPETRILIDCGDKPGAEG--EVPYLHAPEAFGAGPETIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSAFIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRTPPYDSEQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVCFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|435848113|ref|YP_007310363.1| KH-domain/beta-lactamase-domain protein [Natronococcus occultus
SP4]
gi|433674381|gb|AGB38573.1| KH-domain/beta-lactamase-domain protein [Natronococcus occultus
SP4]
Length = 644
Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ R++ DCG + P ID +V+T
Sbjct: 186 TLGCCREVGRASFILSTPETRVLIDCGDKPGAEG--EVPYLHAPEALGAGAQTIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSALIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDV-ASKEGRSPPYESEMVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHTIPLEYGDVTDIAPDVKLTLHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYDDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|345311496|ref|XP_001519388.2| PREDICTED: integrator complex subunit 11-like, partial
[Ornithorhynchus anatinus]
Length = 359
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 48/63 (76%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V+I GK +M DCGMHM YND R++PDFS I++S N +DC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTNFLDC 63
Query: 63 IVI 65
++I
Sbjct: 64 VII 66
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 31/36 (86%)
Query: 167 VGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
VG ++VYTGDYNMTPDRHLGAA ID+ + +LLITE
Sbjct: 76 VGSESVVYTGDYNMTPDRHLGAAWIDKCRPNLLITE 111
>gi|448361792|ref|ZP_21550405.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
asiatica DSM 12278]
gi|445649472|gb|ELZ02409.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
asiatica DSM 12278]
Length = 644
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P ID +V+T
Sbjct: 186 TLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEAFGAGPETIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR + ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSAFIPLLFKY-GYDGPIYCTEPTRDMMGLLTLDYLDVAA-KEGRTPPYDSERVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHCIPLEYGDVTDIAPDVKLTLHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|70608064|ref|YP_256934.1| hypothetical protein Saci_2362 [Sulfolobus acidocaldarius DSM 639]
gi|449068310|ref|YP_007435392.1| hypothetical protein SacN8_11500 [Sulfolobus acidocaldarius N8]
gi|449070628|ref|YP_007437709.1| hypothetical protein SacRon12I_11745 [Sulfolobus acidocaldarius
Ron12/I]
gi|68568712|gb|AAY81641.1| conserved Archaeal protein [Sulfolobus acidocaldarius DSM 639]
gi|449036818|gb|AGE72244.1| hypothetical protein SacN8_11500 [Sulfolobus acidocaldarius N8]
gi|449039136|gb|AGE74561.1| hypothetical protein SacRon12I_11745 [Sulfolobus acidocaldarius
Ron12/I]
Length = 422
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 16/204 (7%)
Query: 1 MAIDCL-VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA 59
M +D + +LG G+EVG++ + V+ I+ D G++ ND+ P + N
Sbjct: 1 MPMDSVKILGGGREVGRAAIEVSKGDSAIILDYGVNFDQNDNPNLP-------LQETPNR 53
Query: 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
+ V++H HLDH+G+LP + Y P++ T T+ + +ML+D+ K+ G
Sbjct: 54 VKGFVVSHSHLDHVGSLPLYQISGSY--PVFGTMMTKLITELMLKDFLKL----SGARLP 107
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
F + M V+ Q ++D ++ AGH+ G++M K +VYTGD N
Sbjct: 108 FEWMEVKRTMDNFRTVNYYQEFEIDT-FKVELGNAGHIPGSSMIKVKTDKHNIVYTGDTN 166
Query: 180 MTPDRHLGAARIDRLQ-LDLLITE 202
+ + +G A ++ L D+L+ E
Sbjct: 167 VINTKLVGPADLNFLSDADVLVIE 190
>gi|448330809|ref|ZP_21520085.1| KH-domain/beta-lactamase-domain-containing protein [Natrinema
versiforme JCM 10478]
gi|445610645|gb|ELY64414.1| KH-domain/beta-lactamase-domain-containing protein [Natrinema
versiforme JCM 10478]
Length = 644
Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P ID +V+T
Sbjct: 186 TLGCCREVGRASFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR + ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSALIPLLFKY-GYDGPIYCTEPTRDMMGLLTLDYLDVAA-KEGRSPPYESEQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYDDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|448322522|ref|ZP_21511992.1| KH-domain/beta-lactamase-domain-containing protein [Natronococcus
amylolyticus DSM 10524]
gi|445601280|gb|ELY55269.1| KH-domain/beta-lactamase-domain-containing protein [Natronococcus
amylolyticus DSM 10524]
Length = 644
Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P ID +V+T
Sbjct: 186 TLGCCREVGRASFILSTPETRILIDCGDKPGAEG--EVPYLHAPEAFGAGAQTIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSAFIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDV-ASKEGRAPPYESEMVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYDDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|407465689|ref|YP_006776571.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
sp. AR2]
gi|407048877|gb|AFS83629.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
sp. AR2]
Length = 646
Score = 86.3 bits (212), Expect = 6e-15, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 90/173 (52%), Gaps = 8/173 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +VG+S ++++ +I+ DCG++ A + +P ++ + D +D IVI
Sbjct: 194 LGGFGQVGRSSLLLSTPESKILIDCGINPGARSPMDAFPRLDSLNITLD---ELDAIVIG 250
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH G LP + GY GPIY T PT + ++ D KV +G ++ +
Sbjct: 251 HAHLDHTGFLPTLCKY-GYKGPIYCTEPTLPMMNLIQLDAIKV-ASAQGRTPIYSERDVK 308
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM--FYAKVGDSAMVYTGD 177
+ M++ I + + D+++ AGH+LG+A+ F+ GD VY+GD
Sbjct: 309 QIMRQTITLPYGTVTDISPDIKLVLANAGHILGSALCHFHIGNGDHNFVYSGD 361
>gi|433590934|ref|YP_007280430.1| KH-domain/beta-lactamase-domain protein [Natrinema pellirubrum DSM
15624]
gi|448334467|ref|ZP_21523642.1| KH-domain/beta-lactamase-domain protein [Natrinema pellirubrum DSM
15624]
gi|448385409|ref|ZP_21563915.1| KH-domain/beta-lactamase-domain protein [Haloterrigena
thermotolerans DSM 11522]
gi|433305714|gb|AGB31526.1| KH-domain/beta-lactamase-domain protein [Natrinema pellirubrum DSM
15624]
gi|445619799|gb|ELY73316.1| KH-domain/beta-lactamase-domain protein [Natrinema pellirubrum DSM
15624]
gi|445656904|gb|ELZ09736.1| KH-domain/beta-lactamase-domain protein [Haloterrigena
thermotolerans DSM 11522]
Length = 644
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P ID +V+T
Sbjct: 186 TLGCCREVGRASFILSTPETRILIDCGDKPGAEG--EVPYLHAPEALGAGPQTIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR + ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSALIPLLFKY-GYDGPIYCTEPTRDMMGLLTLDYLDVAA-KEGRSPPYESEQVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYDDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|385811246|ref|YP_005847642.1| RNA-processing exonuclease [Ignavibacterium album JCM 16511]
gi|383803294|gb|AFH50374.1| Putative RNA-processing exonuclease [Ignavibacterium album JCM
16511]
Length = 461
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 97/209 (46%), Gaps = 15/209 (7%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I L +G G E+G +C + ING I+ DCG+H P F + N +D
Sbjct: 2 ISFLSVGGGNEIGANCFYLNINGNGIILDCGIHPQKVGIESLPKFELLE-----NKTLDH 56
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVD--RRGEVEQF 120
+I+H H DHI ALPF + Y I+ T TRALA + L + +L + + E +
Sbjct: 57 ALISHAHQDHIAALPFLIKKFPY-IKIFTTPQTRALAELTLHNAVSILKKEIKDEQFEFY 115
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRA-------YYAGHVLGAAMFYAKVGDSAMV 173
T D + +K + D ++ + Q++ + AGH+LG++ + +
Sbjct: 116 THDEVDLLIKMINYYDYEKDFLLSSYHQLKEADVIATFFDAGHILGSSGIFLNNNGYKIF 175
Query: 174 YTGDYNMTPDRHLGAARIDRLQLDLLITE 202
YTGD N+ AA + +++ LI E
Sbjct: 176 YTGDINLANQTIQPAAILPNTKINTLILE 204
>gi|397780985|ref|YP_006545458.1| hypothetical protein BN140_1819 [Methanoculleus bourgensis MS2]
gi|396939487|emb|CCJ36742.1| putative protein MJ1236 [Methanoculleus bourgensis MS2]
Length = 630
Score = 86.3 bits (212), Expect = 7e-15, Method: Composition-based stats.
Identities = 56/203 (27%), Positives = 104/203 (51%), Gaps = 19/203 (9%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGM---HMAYNDHRQY-PDFSRISKSCDFNNAIDCI 63
LG +EVG++ +++ +++ DCG + A Y P+ + +++D +
Sbjct: 184 LGCCREVGRAAFLISTPESKVLVDCGEKPGNTANGTPYIYVPEIYPL-------DSLDAV 236
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FT 121
V+TH HLDH +P + GY GP+Y T PTR L+ ++ DY V+ R E ++ +T
Sbjct: 237 VLTHAHLDHCALVPLLFKY-GYEGPVYSTPPTRDLSAMLQLDYLDVV---RKETDKIPYT 292
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYN 179
S+ + +K I ++ + D+++ + AGH+LG+A+ + +G+ + +TGD+N
Sbjct: 293 SNEVKTYIKHSITLNYGSVTDIAPDIKLTFHNAGHILGSAIAHFHIGEGLYNIAFTGDFN 352
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
R A +L+ L E
Sbjct: 353 YQKTRLFSPAVSSFPRLEALFME 375
>gi|383451524|ref|YP_005358245.1| hypothetical protein KQS_11340 [Flavobacterium indicum GPTSA100-9]
gi|380503146|emb|CCG54188.1| Protein of unknown function [Flavobacterium indicum GPTSA100-9]
Length = 451
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 17/182 (9%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA V S ++V G +I+ DCGM R+ +R + + ID +++TH
Sbjct: 6 LGAASTVTGSKILVETQGLKILIDCGMFQGLKILRE---LNREPLAVP-PSTIDFVLLTH 61
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDR--RGEVEQFTSDHI 125
HLDH G LP G+NG I+ T+PT+ + ++LED K+ + R E F+ +
Sbjct: 62 GHLDHCGWLPKLVA-DGFNGKIFCTHPTKEITKLILEDSAKIQEEEAERANKENFSKHNP 120
Query: 126 AECMKKVIAVD--LKQTVQVDKDLQIRA--------YYAGHVLGAAMFYAKVGDSAMVYT 175
A + V V+ L VDKDL+I+ +YAGH+LGA + + +V++
Sbjct: 121 ATPLYTVEDVEKVLPLFRVVDKDLEIKIEDNVWFKFFYAGHILGACSIELHIENKTLVFS 180
Query: 176 GD 177
GD
Sbjct: 181 GD 182
>gi|374301459|ref|YP_005053098.1| RNA-metabolising metallo-beta-lactamase [Desulfovibrio africanus
str. Walvis Bay]
gi|332554395|gb|EGJ51439.1| RNA-metabolising metallo-beta-lactamase [Desulfovibrio africanus
str. Walvis Bay]
Length = 535
Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 101/196 (51%), Gaps = 23/196 (11%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA + V SC V+ NG+R DCGMH + + + + D ++ I++TH
Sbjct: 6 LGAARTVTGSCYVLEANGRRFAVDCGMHQGNREIDKRNEDMQPYAPED----LESILVTH 61
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLED----------YRKVLVDRRGEV 117
H+DH G LP + G+NGP+Y T PTRAL IML+D +R RRG+
Sbjct: 62 AHIDHSGLLPRLVK-TGFNGPVYATVPTRALLDIMLQDSAHIQEMEAEWRNYKNLRRGQP 120
Query: 118 EQFTSDHIAECMKKVIAVDLKQTVQVDKDLQ-IRAYY--AGHVLGAA---MFYAKVG-DS 170
A+ +K V + K+ + + + +RA + AGH+LG+A +F + G ++
Sbjct: 121 AVEPLYDQADALKAVGLIRPKEYMDWFEPVPGVRARFLDAGHILGSAVIELFVQEDGKET 180
Query: 171 AMVYTGDYNMTPDRHL 186
+V++GD PD+ L
Sbjct: 181 KLVFSGDLG-RPDQLL 195
>gi|448368913|ref|ZP_21555680.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
aegyptia DSM 13077]
gi|445651456|gb|ELZ04364.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
aegyptia DSM 13077]
Length = 644
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P ID +V+T
Sbjct: 186 TLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEAFGAGPETIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR + ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSAFIPLLFKY-GYDGPIYCTEPTRDMMGLLTLDYLDVAA-KEGRTPPYDSEMVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHCIPLEYGDVTDIAPDIKLTLHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|448348697|ref|ZP_21537545.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
taiwanensis DSM 12281]
gi|445642358|gb|ELY95426.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
taiwanensis DSM 12281]
Length = 644
Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P ID +V+T
Sbjct: 186 TLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEAFGAGPETIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR + ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSAFIPLLFKY-GYDGPIYCTEPTRDMMGLLTLDYLDVAA-KEGRTPPYDSEMVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHCIPLEYGDVTDIAPDVKLTLHNAGHILGSAVSHFHIGDGLYNVAFSGDIHYEDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|448358886|ref|ZP_21547560.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
chahannaoensis JCM 10990]
gi|445644566|gb|ELY97579.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
chahannaoensis JCM 10990]
Length = 644
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P ID +V+T
Sbjct: 186 TLGCCREVGRAAFILSTPETRILIDCGDKPGAEG--EVPYLHAPEAFGAGPETIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSAFIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRTPPYDSEMVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVCFSGDIHYDDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|167043327|gb|ABZ08031.1| putative Metallo-beta-lactamase superfamily protein [uncultured
marine crenarchaeote HF4000_ANIW141N1]
Length = 422
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/203 (30%), Positives = 99/203 (48%), Gaps = 18/203 (8%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAY--NDHRQYPDFSRISKSCDFNNAI 60
++ VLGA EVG+S +V + I+ D G+ A +D YP + +
Sbjct: 1 MNVRVLGAASEVGRSGFLVKCDRTNILLDYGVMFAKRRDDPPLYPLHIKPKD-------V 53
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
D VITH HLDH G +P G N +Y T PT L+ +++ED K+ ++ F
Sbjct: 54 DAAVITHAHLDHSGCVPSL--FIGGNTHVYATPPTHDLSILLIEDMLKIEKNKH----SF 107
Query: 121 TSDHIAECMKKVIAVDLKQTVQV-DKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
H+ +K + ++ V++ + ++RA +GHV+G + + + YTGD N
Sbjct: 108 DYRHVNNMIKNSKEIGFREPVKIGNATFELRA--SGHVIGGSTVLVESEGKRLFYTGDIN 165
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
+ R L A +D +DLLITE
Sbjct: 166 LRGSRMLPEADLDMGDIDLLITE 188
>gi|308160032|gb|EFO62542.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia P15]
Length = 620
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/230 (28%), Positives = 98/230 (42%), Gaps = 37/230 (16%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGK-RIMFDCGMHMAYNDHRQYPDFSRI---SKSCDFNN 58
I + LG +G SC +V + K + DCG+ + D + P F
Sbjct: 10 IVVIPLGMSPRIGNSCYLVIVGSKVSFLLDCGLRTSAPDGERVPSFKLKCLQDMGYSLER 69
Query: 59 AIDCIVITHFHLDHIGALPF-FTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEV 117
+D I+I+H H DH GALPF F+ +N P+Y T T+ L P M DY +V + +
Sbjct: 70 DLDFIIISHAHFDHSGALPFLFSLFPNFNRPVYTTEATKFLLPQMYADYDRVFDNTNQSM 129
Query: 118 EQF----------------------TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAG 155
+ ++ +A+C + +TV I AG
Sbjct: 130 SKLEKQARTIEVRSRIISLLKTYKSNTNFVADCQPSRTGEPVPETV-------INFSNAG 182
Query: 156 HVLGAAMFYAKV-GDSAMVYTGDYNMTPDRHLGAARIDRLQL--DLLITE 202
H++GA + V G + +VYTGDYN T L A + + D+LITE
Sbjct: 183 HIIGAVITTITVAGYAKIVYTGDYNTTARTTLPGATLPSCAIGADILITE 232
>gi|408404164|ref|YP_006862147.1| beta-lactamase [Candidatus Nitrososphaera gargensis Ga9.2]
gi|408364760|gb|AFU58490.1| beta-lactamase domain protein [Candidatus Nitrososphaera gargensis
Ga9.2]
Length = 700
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 7/197 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMA-YNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG ++VG+SC +V ++M DCG++ + YP + D +D ++I
Sbjct: 251 LGGVKQVGRSCFIVVTPESKVMLDCGINPGEMSGLNAYPRLDWFNFDLD---DLDAVIIG 307
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H+DH G LP + GY GP+Y T PT L ++ D K+ + G + + +
Sbjct: 308 HAHIDHQGFLPALFK-YGYKGPVYCTEPTLPLMTLLQMDSVKI-ANSNGTYLPYEARDVN 365
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKV-GDSAMVYTGDYNMTPDRH 185
E +K I + + + D+ I AGH++G+A + + G ++Y+GDY +
Sbjct: 366 EVIKHCITLPYGKPTDISPDITITLQNAGHIMGSATVHLNISGAHNILYSGDYKYARTQL 425
Query: 186 LGAARIDRLQLDLLITE 202
L +A +++ LITE
Sbjct: 426 LDSAVSMYPRVETLITE 442
>gi|407463310|ref|YP_006774627.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
koreensis AR1]
gi|407046932|gb|AFS81685.1| beta-lactamase domain-containing protein [Candidatus Nitrosopumilus
koreensis AR1]
Length = 646
Score = 85.5 bits (210), Expect = 1e-14, Method: Composition-based stats.
Identities = 52/178 (29%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDHRQYPDFSRISKSCDFNNAID 61
+ LG +VG+S ++++ +I+ DCG++ A + +P ++ + D +D
Sbjct: 189 VSLFTLGGFGQVGRSSLLLSTPESKILIDCGINPGARSPMDAFPRLDSLNITLD---DLD 245
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
+VI H HLDH G LP + GY GPIY T PT + ++ D KV +G ++
Sbjct: 246 AVVIGHAHLDHTGFLPTLCKY-GYKGPIYCTEPTLPMMNLIQLDAIKVAA-AQGRTPIYS 303
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM--FYAKVGDSAMVYTGD 177
+ + M++ I + + D+++ AGH+LG+A+ F+ GD VY+GD
Sbjct: 304 ERDVKQIMRQTITLPYGTVTDISPDIKLVLANAGHILGSALCHFHIGNGDHNFVYSGD 361
>gi|386359601|ref|YP_006057846.1| beta-lactamase fold exonuclease [Thermus thermophilus JL-18]
gi|383508628|gb|AFH38060.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermus thermophilus JL-18]
Length = 431
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 87/171 (50%), Gaps = 15/171 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
GA +EV SC ++ +R++ DCGM + R + F K +D +++TH
Sbjct: 6 FGAAREVTGSCHLLLAGSRRVLLDCGMFQGKEEARNHAPFGFDPKE------VDAVLLTH 59
Query: 68 FHLDHIGALP-FFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
HLDH+G LP F E GY GP+Y T T L I+LED KV+ + F+ + +
Sbjct: 60 AHLDHVGRLPKLFRE--GYRGPVYATRATALLMEIVLEDALKVMDE-----PFFSPEDVE 112
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
E + + ++ + +++ L + AGH+ G+A A+ +VY+GD
Sbjct: 113 EALGHLRPLEYGEWLRLGA-LSLTFGQAGHLPGSAFVVAQGEGRTLVYSGD 162
>gi|126465769|ref|YP_001040878.1| beta-lactamase domain-containing protein [Staphylothermus marinus
F1]
gi|126014592|gb|ABN69970.1| beta-lactamase domain protein [Staphylothermus marinus F1]
Length = 427
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 101/201 (50%), Gaps = 23/201 (11%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LG G EVG++ +V N K+ + D G++ DH Q+P R + + + IT
Sbjct: 6 ILGGGNEVGRAAYLVVDNNKKFLLDYGVNFDEEDHPQFPLHVRPIE-------LSGLAIT 58
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---LVDRRGEVEQFTSD 123
H HLDHIGA P I G +++T PT + +++ D+ K+ +D +E+F
Sbjct: 59 HAHLDHIGAAPLLY-ITG-KPRVFVTKPTLEIGKLLISDFLKLNAYYIDY--SIEEF--- 111
Query: 124 HIAECMKKVIAVDLKQTVQVDKD-LQIRAYYAGHVLGAAMFYAKVGDS-AMVYTGDYNMT 181
E M A L+ V+V+ D +I AGH+LG+AM Y + ++YTGD N
Sbjct: 112 ---EVMASN-AHFLEYGVEVENDGFKIIVTSAGHILGSAMIYLETPSGHRILYTGDVNTI 167
Query: 182 PDRHLGAARIDRLQLDLLITE 202
L A + L++D LI E
Sbjct: 168 QTWTLSRAELWPLKIDTLIIE 188
>gi|15922516|ref|NP_378185.1| cleavage and polyadenylation specificity factor small subunit
[Sulfolobus tokodaii str. 7]
gi|342306664|dbj|BAK54753.1| ribonuclease J [Sulfolobus tokodaii str. 7]
Length = 422
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 101/203 (49%), Gaps = 15/203 (7%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
M +LG G+EVG++ + VT + + I+ D G++ ND+ P S+ F
Sbjct: 1 MEYSIKILGGGKEVGRAAIEVTTSSESIILDYGVNFDANDNPNLPLQEVPSRVKGF---- 56
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
+++H HLDH+GALP + +I G N PI+ T TR + +ML+D+ K+ G F
Sbjct: 57 ---IVSHSHLDHVGALPLY-QISG-NFPIFGTRLTRLITELMLKDFLKL----SGAKVPF 107
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+ + M +V + +V + AGH+ G++M K +VYTGD N+
Sbjct: 108 EWTEVRKVMDNFRSVKYHEEFEVG-TFKTELGDAGHIPGSSMIKIKTEKGNIVYTGDTNV 166
Query: 181 TPDRHLGAARIDRLQ-LDLLITE 202
+ A ++ L+ ++LI E
Sbjct: 167 INTHLVKPAELEFLRDANVLIIE 189
>gi|159112921|ref|XP_001706688.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia ATCC 50803]
gi|157434787|gb|EDO79014.1| Cleavage and polyadenylation specificity factor, 73 kDa subunit
[Giardia lamblia ATCC 50803]
Length = 620
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 66/221 (29%), Positives = 96/221 (43%), Gaps = 29/221 (13%)
Query: 8 LGAGQEVGKSCVVVTINGK-RIMFDCGMHMAYNDHRQYPDFSRISKSC------DFNNAI 60
LG +G SC +V + K + DCG+ + D + P F C +
Sbjct: 15 LGMSPRIGNSCYLVIVGSKVSFLLDCGLRTSAPDGERVPSFKL---KCLQDMGYSLERDL 71
Query: 61 DCIVITHFHLDHIGALPF-FTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
D I+I+H H DH GALPF F+ +N P+Y T T+ L P M DY +V + + +
Sbjct: 72 DFIIISHAHFDHSGALPFLFSLFPNFNRPVYTTEATKFLLPQMYADYDRVFDNTNQSMSK 131
Query: 120 FTSD-HIAECMKKVIAV--DLKQTVQVDKDLQ------------IRAYYAGHVLGAAMFY 164
E ++I++ K D Q I AGH++GA +
Sbjct: 132 LEKQARTIEVRSRIISLLKTYKNNTNFVADCQPSRTGEPVPETIINFSNAGHIIGAVITT 191
Query: 165 AKV-GDSAMVYTGDYNMTPDRHLGAARIDRLQL--DLLITE 202
V G + +VYTGDYN T L A + + D+LITE
Sbjct: 192 ITVAGCAKIVYTGDYNTTARTTLPGATLPNCAIGADILITE 232
>gi|289580012|ref|YP_003478478.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
magadii ATCC 43099]
gi|448281251|ref|ZP_21472558.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
magadii ATCC 43099]
gi|289529565|gb|ADD03916.1| KH-domain/beta-lactamase-domain protein [Natrialba magadii ATCC
43099]
gi|445579181|gb|ELY33577.1| KH-domain/beta-lactamase-domain-containing protein [Natrialba
magadii ATCC 43099]
Length = 644
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 96/198 (48%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +EVG++ +++ RI+ DCG + P ID +V+T
Sbjct: 186 TLGCCREVGRASFILSTPETRILVDCGDKPGAEG--EVPYLHAPEAFGAGPETIDAVVLT 243
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P + GY+GPIY T PTR L ++ DY V + G + S+ +
Sbjct: 244 HAHLDHSAFIPLLFKY-GYDGPIYCTEPTRDLMGLLTLDYLDVAA-KEGRTPPYDSEMVR 301
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS--AMVYTGDYNMTPDR 184
E +K I ++ + D+++ + AGH+LG+A+ + +GD + ++GD + R
Sbjct: 302 EAIKHCIPLEYGDVTDIAPDVKLTFHNAGHILGSAVSHFHIGDGLYNVCFSGDIHYDDTR 361
Query: 185 HLGAARIDRLQLDLLITE 202
A D +++ L+ E
Sbjct: 362 LFNGAVNDFPRVETLVLE 379
>gi|434374727|ref|YP_006609371.1| metallo-beta-lactamase [Bacillus thuringiensis HD-789]
gi|401873284|gb|AFQ25451.1| metallo-beta-lactamase [Bacillus thuringiensis HD-789]
Length = 419
Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y + YP+ R ++ F +D + ++
Sbjct: 5 VWGGAGEYGRSCYFVKNKETKILFDCGINRSY--EKSYPEIER--EAVPF---LDAVFLS 57
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G ++ HI
Sbjct: 58 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-MQGWNLPYSDQHIK 115
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + +Q+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 116 DLNYVCIDEI--SNPNEWIQITPTLRFQWGYSGHVLGAVWFLVDLCNTYVFYSGDYS 170
>gi|423563912|ref|ZP_17540188.1| hypothetical protein II5_03316 [Bacillus cereus MSX-A1]
gi|401198406|gb|EJR05326.1| hypothetical protein II5_03316 [Bacillus cereus MSX-A1]
Length = 436
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y + YP+ R ++ F +D + ++
Sbjct: 22 VWGGAGEYGRSCYFVKNKETKILFDCGINRSY--EKSYPEIER--EAVPF---LDAVFLS 74
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G ++ HI
Sbjct: 75 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-MQGWNLPYSDQHIK 132
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + +Q+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 133 DLNYVCIDEI--SNPNEWIQITPTLRFQWGYSGHVLGAVWFLVDLCNTYVFYSGDYS 187
>gi|156937397|ref|YP_001435193.1| beta-lactamase domain-containing protein [Ignicoccus hospitalis
KIN4/I]
gi|156566381|gb|ABU81786.1| beta-lactamase domain protein [Ignicoccus hospitalis KIN4/I]
Length = 428
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 97/205 (47%), Gaps = 16/205 (7%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
M + LG +EVG++ V ++ D G+ D +P++ +
Sbjct: 1 MGAEITFLGGAREVGRAAYWVKDGKASLLLDYGVSFDEEDRPVFPEYVS-------PKDV 53
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
+V++H HLDH GALP P YMT T+ L I++ D+ K+ G +
Sbjct: 54 GAVVLSHAHLDHSGALPML--YSAIRRPAYMTKLTKELTAILINDFLKL----SGYYATY 107
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDK--DLQIRAYYAGHVLGAAMFYAKVGDS-AMVYTGD 177
+ E ++ V VD ++TV++ + + Y AGH+ G+AM ++ ++YTGD
Sbjct: 108 GETEVKEFLESVRTVDYRRTVEIPEAGGTLLTFYDAGHIPGSAMVKLELPSGLKLLYTGD 167
Query: 178 YNMTPDRHLGAARIDRLQLDLLITE 202
++ + LG A + L+ D+LI E
Sbjct: 168 VRLSETQLLGGADVSGLEADVLIIE 192
>gi|374710344|ref|ZP_09714778.1| beta-lactamase domain-containing protein [Sporolactobacillus
inulinus CASD]
Length = 916
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/190 (30%), Positives = 92/190 (48%), Gaps = 15/190 (7%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
VLG G E+G SC+ + I ++ D GM + H P I D D I++T
Sbjct: 11 VLGGGSEIGASCLHIQIGKTNLIIDAGMRV----HGDEP-LPAIGMLDDLGKP-DAILVT 64
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDR---RGEVEQFTSD 123
H H DHIGALP I + PI+ PT L IM+ D K++ R R + +T +
Sbjct: 65 HAHADHIGALPVVHRIYP-DVPIFANPPTADLMQIMMRDSFKIMTQRCMDRRTLIPYTKE 123
Query: 124 HIAECMK--KVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+ E ++ ++ + + T+ D + + AGH+LGA MF + G+ ++ +GD +
Sbjct: 124 QMEETLRALRLFPANGQMTI---GDASVTLHRAGHILGAVMFTIETGEEKLLVSGDLSFK 180
Query: 182 PDRHLGAARI 191
R + A +
Sbjct: 181 AGRTIPGAEV 190
>gi|218896724|ref|YP_002445135.1| metallo-beta-lactamase [Bacillus cereus G9842]
gi|218543689|gb|ACK96083.1| metallo-beta-lactamase family protein [Bacillus cereus G9842]
Length = 419
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R ++ F +D + ++
Sbjct: 5 VWGGAGEYGRSCYFVKNKETKIVFDCGINRSYED--SYPKIER--EAVPF---LDAVFLS 57
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G ++ HI
Sbjct: 58 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-MQGWNLPYSDQHIK 115
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + +Q+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 116 DLNYVCIDEI--SNPNEWIQITPTLRFQWGYSGHVLGAVWFLVDLCNTYVFYSGDYS 170
>gi|75758998|ref|ZP_00739107.1| putative Zn-dependent hydrolases (beta-lactamase superfamily)
[Bacillus thuringiensis serovar israelensis ATCC 35646]
gi|74493533|gb|EAO56640.1| putative Zn-dependent hydrolases (beta-lactamase superfamily)
[Bacillus thuringiensis serovar israelensis ATCC 35646]
Length = 436
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 90/177 (50%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y + YP+ R ++ F +D + ++
Sbjct: 22 VWGGAGEYGRSCYFVKNKETKILFDCGINRSY--EKSYPEIER--EAVPF---LDAVFLS 74
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G ++ HI
Sbjct: 75 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-MQGWNLPYSDQHIK 132
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + +Q+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 133 DLNYVCIDEI--SNPNEWIQITPTLRFQWGYSGHVLGAVWFLVDLCNTYVFYSGDYS 187
>gi|423654566|ref|ZP_17629865.1| hypothetical protein IKG_01554 [Bacillus cereus VD200]
gi|401294703|gb|EJS00329.1| hypothetical protein IKG_01554 [Bacillus cereus VD200]
Length = 436
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R ++ F +D + ++
Sbjct: 22 VWGGAGEYGRSCYFVKNKETKIVFDCGINRSYED--SYPKIER--EAVPF---LDAVFLS 74
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G ++ HI
Sbjct: 75 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-MQGWNLPYSDQHIK 132
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + VQ+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 133 DLNYVCIDEI--SNPNEWVQITPTLRFQWGYSGHVLGAVWFLVDMCNTYVFYSGDYS 187
>gi|386875398|ref|ZP_10117572.1| KH/beta-lactamase domain protein [Candidatus Nitrosopumilus salaria
BD31]
gi|386806797|gb|EIJ66242.1| KH/beta-lactamase domain protein [Candidatus Nitrosopumilus salaria
BD31]
Length = 646
Score = 85.1 bits (209), Expect = 2e-14, Method: Composition-based stats.
Identities = 53/173 (30%), Positives = 89/173 (51%), Gaps = 8/173 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG +VG+S ++++ +I+ DCG++ A + +P ++ + D +D IVI
Sbjct: 194 LGGFGQVGRSSLLLSTPESKILIDCGINPGARSPMDAFPRLDSLNITLD---ELDAIVIG 250
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH G LP + GY GPIY T PT + ++ D KV +G + +
Sbjct: 251 HAHLDHTGFLPALCKY-GYKGPIYCTEPTLPMMNLIQLDAIKVAA-AQGRTPIYAERDVK 308
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM--FYAKVGDSAMVYTGD 177
+ M++ I + + D+++ AGH+LG+A+ F+ GD VY+GD
Sbjct: 309 QIMRQAITLPYGTVTDISPDIKLVFANAGHILGSALCHFHIGNGDHNFVYSGD 361
>gi|163783204|ref|ZP_02178198.1| RNA-metabolising metallo-beta-lactamase [Hydrogenivirga sp.
128-5-R1-1]
gi|159881538|gb|EDP75048.1| RNA-metabolising metallo-beta-lactamase [Hydrogenivirga sp.
128-5-R1-1]
Length = 458
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 91/192 (47%), Gaps = 22/192 (11%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
MAI GA + V SC +V + G +++ DCGM + + Y F DF
Sbjct: 1 MAIRITPCGAARTVTGSCHLVEVEGTKLLIDCGMFQGEEEEKNYEPFPFEPGEIDF---- 56
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVL---------- 110
+++TH H+DH G +P + G+ G I T PT +A IML D KV+
Sbjct: 57 --LILTHAHIDHCGRIPLLVK-EGFKGKILCTRPTAQIAKIMLLDAAKVMHETYRSRLKK 113
Query: 111 VDRRGEVEQ---FTSDHIAECMK--KVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYA 165
+R GEV + + + + ++ ++ Q+ K+L++ + AGH+LG++
Sbjct: 114 AERLGEVVNPPLYEELDVLDSFEFFSTPYLEYEREYQLGKELRVTLWDAGHILGSSFVEL 173
Query: 166 KVGDSAMVYTGD 177
KV D ++GD
Sbjct: 174 KVKDKVFTFSGD 185
>gi|124485834|ref|YP_001030450.1| ADP-ribosylation/crystallin J1 [Methanocorpusculum labreanum Z]
gi|124363375|gb|ABN07183.1| beta-lactamase domain protein [Methanocorpusculum labreanum Z]
Length = 636
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 6/198 (3%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
LG ++VG++ +++ +++ DCG P + + + F N +D +V+T
Sbjct: 187 TLGCCRQVGRAAFLLSTPESKVLIDCGESPGATGAASSP-YLNVPEIYPFTN-LDAVVLT 244
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H HLDH +P GY+GP+Y T TR LA ++ DY V ++ ++S+ I
Sbjct: 245 HAHLDHSAFIPLLYRY-GYDGPVYTTPATRDLATMLQLDYLDV-NNKEDRAPPYSSNEIR 302
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDR 184
E +K IA+ + D+++ + AGH+LG+A+ + VG+ + +TGD R
Sbjct: 303 EFVKHTIALGYGDVTDIAPDMKLTLHNAGHILGSAIAHFNVGNGVYNVAFTGDLFYGKSR 362
Query: 185 HLGAARIDRLQLDLLITE 202
A +L+ L+ E
Sbjct: 363 LFNPAVSQFPRLESLVIE 380
>gi|423383184|ref|ZP_17360440.1| hypothetical protein ICE_00930 [Bacillus cereus BAG1X1-2]
gi|423530356|ref|ZP_17506801.1| hypothetical protein IGE_03908 [Bacillus cereus HuB1-1]
gi|401644044|gb|EJS61738.1| hypothetical protein ICE_00930 [Bacillus cereus BAG1X1-2]
gi|402446871|gb|EJV78729.1| hypothetical protein IGE_03908 [Bacillus cereus HuB1-1]
Length = 436
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R ++ F +D + ++
Sbjct: 22 VWGGAGEYGRSCYFVKNKETKIVFDCGINRSYED--SYPKIER--EAVPF---LDAVFLS 74
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G ++ HI
Sbjct: 75 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-MQGWDLPYSDQHIK 132
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + VQ+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 133 DLNYVCIDEI--SNPNEWVQITPTLRFQWGYSGHVLGAVWFLVDMYNTYVFYSGDYS 187
>gi|423361745|ref|ZP_17339247.1| hypothetical protein IC1_03724 [Bacillus cereus VD022]
gi|401079556|gb|EJP87854.1| hypothetical protein IC1_03724 [Bacillus cereus VD022]
Length = 436
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R ++ F +D + ++
Sbjct: 22 VWGGAGEYGRSCYFVKNKETKIVFDCGINRSYED--SYPKIER--EAVPF---LDAVFLS 74
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G ++ HI
Sbjct: 75 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-MQGWNLPYSDQHIK 132
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + +Q+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 133 DLNYVCIDEI--SNPNEWIQITPTLRFQWGYSGHVLGAVWFLVDLCNTYVFYSGDYS 187
>gi|297527561|ref|YP_003669585.1| beta-lactamase domain-containing protein [Staphylothermus
hellenicus DSM 12710]
gi|297256477|gb|ADI32686.1| beta-lactamase domain protein [Staphylothermus hellenicus DSM
12710]
Length = 427
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/201 (31%), Positives = 102/201 (50%), Gaps = 23/201 (11%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LG G EVG++ ++ + K+ + D G++ DH Q+P R + + + IT
Sbjct: 6 ILGGGNEVGRAAYLIVDDNKKFLLDYGVNFDEEDHPQFPLHVRPIE-------LSGLAIT 58
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---LVDRRGEVEQFTSD 123
H HLDHIGA P I G +++T PT + +++ D+ K+ +D +E+F
Sbjct: 59 HAHLDHIGAAPLLY-ITG-KPRVFVTKPTLDIGKLLISDFLKLNAYYIDY--SIEEF--- 111
Query: 124 HIAECMKKVIAVDLKQTVQVDKD-LQIRAYYAGHVLGAAMFYAKVGDS-AMVYTGDYNMT 181
E M A L+ V+V+ D +I A AGH+LG+AM Y + ++YTGD N
Sbjct: 112 ---EAMASN-AYLLEYGVEVENDGFKIIATNAGHILGSAMIYLETPSGHRILYTGDVNTI 167
Query: 182 PDRHLGAARIDRLQLDLLITE 202
L A + L++D LI E
Sbjct: 168 QTWTLSRAELWPLKIDTLIIE 188
>gi|229127115|ref|ZP_04256112.1| Zn-dependent hydrolase (Beta-lactamase superfamily) [Bacillus
cereus BDRD-Cer4]
gi|228656231|gb|EEL12072.1| Zn-dependent hydrolase (Beta-lactamase superfamily) [Bacillus
cereus BDRD-Cer4]
Length = 417
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R ++ F +D + ++
Sbjct: 3 VWGGAGEYGRSCYFVKNKETKIVFDCGINRSYED--SYPKIER--EAVPF---LDAVFLS 55
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G ++ HI
Sbjct: 56 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-LQGWNLPYSDQHIK 113
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + VQ+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 114 DLNYVCIDEI--SNPNKWVQITPTLRFQWGYSGHVLGAVWFLVDMCNTYVFYSGDYS 168
>gi|357419642|ref|YP_004932634.1| RNA-metabolising metallo-beta-lactamase [Thermovirga lienii DSM
17291]
gi|355397108|gb|AER66537.1| RNA-metabolising metallo-beta-lactamase [Thermovirga lienii DSM
17291]
Length = 537
Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/189 (29%), Positives = 98/189 (51%), Gaps = 26/189 (13%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVI 65
+LGA QEV S ++ ++G+R++ DCG++ N + D++ + ID +++
Sbjct: 5 ILGAAQEVTGSNYLLEVDGRRVLVDCGLYQGANSGDNH-------VPLDYDPSTIDAVLL 57
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVD----------RRG 115
TH HLDH G +P + GY GP+Y T PT L I+ D + + R+G
Sbjct: 58 THAHLDHTGKVPLLVK-QGYKGPVYGTRPTLELCDILWRDAAHIQKEDAEWQSRKNMRKG 116
Query: 116 --EVEQ-FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMF--YAKVGDS 170
VE +T + + ++++ +V V++ L++R AGH+LG+A+ + GD
Sbjct: 117 LPPVEPLYTLEDVERSLERLRSVGYDDVVEIVDGLKVRFRDAGHILGSAILEVWLNEGDE 176
Query: 171 --AMVYTGD 177
+V++GD
Sbjct: 177 EVKVVFSGD 185
>gi|218235177|ref|YP_002366474.1| metallo-beta-lactamase [Bacillus cereus B4264]
gi|218163134|gb|ACK63126.1| metallo-beta-lactamase family protein [Bacillus cereus B4264]
Length = 419
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R ++ F +D + ++
Sbjct: 5 VWGGAGEYGRSCYFVKNKETKIVFDCGINRSYED--SYPKIER--EAVPF---LDAVFLS 57
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G ++ HI
Sbjct: 58 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-MQGWNLPYSDQHIK 115
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + +Q+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 116 DLNYVCIDEI--SNPNEWIQITPTLRFQWGYSGHVLGAVWFLVDMCNTYVFYSGDYS 170
>gi|296502388|ref|YP_003664088.1| zinc-dependent hydrolase [Bacillus thuringiensis BMB171]
gi|296323440|gb|ADH06368.1| zinc-dependent hydrolase [Bacillus thuringiensis BMB171]
Length = 419
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R ++ F +D + ++
Sbjct: 5 VWGGAGEYGRSCYFVKNKETKIVFDCGINRSYED--GYPKIER--EAAPF---LDAVFLS 57
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G ++ HI
Sbjct: 58 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-MQGWNLPYSDQHIK 115
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + VQ+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 116 DLNYVCIDEI--SNPNEWVQITPTLRFQWGYSGHVLGAVWFLVDMCNTYVFYSGDYS 170
>gi|228964778|ref|ZP_04125885.1| Zn-dependent hydrolase (Beta-lactamase superfamily) [Bacillus
thuringiensis serovar sotto str. T04001]
gi|402561221|ref|YP_006603945.1| metallo-beta-lactamase [Bacillus thuringiensis HD-771]
gi|228795028|gb|EEM42527.1| Zn-dependent hydrolase (Beta-lactamase superfamily) [Bacillus
thuringiensis serovar sotto str. T04001]
gi|401789873|gb|AFQ15912.1| metallo-beta-lactamase [Bacillus thuringiensis HD-771]
Length = 419
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+ G E G+SC V +I+FDCG++ +Y D YP R ++ F +D + ++
Sbjct: 5 IWGGAGEYGRSCYFVKNKETKIVFDCGINRSYED--SYPKIER--EAVPF---LDAVFLS 57
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G ++ HI
Sbjct: 58 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-MQGWNLPYSDQHIK 115
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + +Q+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 116 DLNYVCIDEI--SNPNEWIQITPTLRFQWGYSGHVLGAVWFLVDLCNTYVFYSGDYS 170
>gi|423647712|ref|ZP_17623282.1| hypothetical protein IKA_01499 [Bacillus cereus VD169]
gi|401285666|gb|EJR91505.1| hypothetical protein IKA_01499 [Bacillus cereus VD169]
Length = 436
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R ++ F +D + ++
Sbjct: 22 VWGGAGEYGRSCYFVKNKETKIVFDCGINRSYED--SYPKIER--EAVPF---LDAVFLS 74
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G ++ HI
Sbjct: 75 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-LQGWNLPYSDQHIK 132
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + VQ+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 133 DLNYVCIDEI--SNPNKWVQITPTLRFQWGYSGHVLGAVWFLVDMCNTYVFYSGDYS 187
>gi|423643170|ref|ZP_17618788.1| hypothetical protein IK9_03115 [Bacillus cereus VD166]
gi|401275174|gb|EJR81141.1| hypothetical protein IK9_03115 [Bacillus cereus VD166]
Length = 436
Score = 84.3 bits (207), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R ++ F +D + ++
Sbjct: 22 VWGGAGEYGRSCYFVKNKETKIVFDCGINRSYED--GYPKIER--EAAPF---LDAVFLS 74
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G ++ HI
Sbjct: 75 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-MQGWNLPYSDQHIK 132
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + VQ+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 133 DLNYVCIDEI--SNPNEWVQITPTLRFQWGYSGHVLGAVWFLVDMCNTYVFYSGDYS 187
>gi|149173952|ref|ZP_01852581.1| exonuclease of the beta-lactamase fold involved in RNA processing
[Planctomyces maris DSM 8797]
gi|148847482|gb|EDL61816.1| exonuclease of the beta-lactamase fold involved in RNA processing
[Planctomyces maris DSM 8797]
Length = 464
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 98/187 (52%), Gaps = 23/187 (12%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGA EV S ++ + +RI+ DCG+ + HRQ + + S+ ++D + ++H
Sbjct: 6 LGAAGEVTGSQHLIETDSRRILLDCGL---FQGHRQ-ESYLKNSRFAYPPESLDAVFLSH 61
Query: 68 FHLDHIGALP-FFTEICGYNGPIYMTYPTRALAPIMLEDYRKV-----------LVDRRG 115
H+DH G LP F + G+ GP++ T T +A IML+D ++ L D+
Sbjct: 62 GHMDHCGNLPRLFNK--GFRGPVFCTSATADIAEIMLKDSARIQEEDARYLARKLTDKHP 119
Query: 116 EVEQ-FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--- 171
+E ++ D + K+ ++ ++ ++ DL++R AGH+LG+A+ K+ D
Sbjct: 120 PIEPLYSEDDVTAVAKQFERLEYQEWHELGDDLKVRFLDAGHILGSAIIELKIKDQREWR 179
Query: 172 -MVYTGD 177
+V+TGD
Sbjct: 180 HLVFTGD 186
>gi|423587833|ref|ZP_17563920.1| hypothetical protein IIE_03245 [Bacillus cereus VD045]
gi|401227570|gb|EJR34099.1| hypothetical protein IIE_03245 [Bacillus cereus VD045]
Length = 436
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R ++ F +D + ++
Sbjct: 22 VWGGAGEYGRSCYFVKNKETKIVFDCGINRSYED--GYPKIER--EAAPF---LDAVFLS 74
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G ++ HI
Sbjct: 75 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-MQGWNLPYSDQHIK 132
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + VQ+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 133 DLNYVCIDEI--SNPNEWVQITPTLRFQWGYSGHVLGAVWFLVDMCNTYVFYSGDYS 187
>gi|410673991|ref|YP_006926362.1| Zn-dependent hydrolase, beta-lactamase superfamily [Bacillus
thuringiensis Bt407]
gi|409173120|gb|AFV17425.1| Zn-dependent hydrolase, beta-lactamase superfamily [Bacillus
thuringiensis Bt407]
Length = 436
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R ++ F +D + ++
Sbjct: 22 VWGGAGEYGRSCYFVKNKETKIVFDCGINRSYED--SYPKIER--EAVPF---LDAVFLS 74
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G + HI
Sbjct: 75 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-MQGWDLPYNDQHIK 132
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + VQ+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 133 DLNYVCIDEI--SNPNEWVQITPTLRFQWGYSGHVLGAVWFLVDMYNTYVFYSGDYS 187
>gi|384185694|ref|YP_005571590.1| zinc-dependent hydrolase [Bacillus thuringiensis serovar chinensis
CT-43]
gi|452198017|ref|YP_007478098.1| Ferric iron ABC transporter, permease protein [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|326939403|gb|AEA15299.1| zinc-dependent hydrolase [Bacillus thuringiensis serovar chinensis
CT-43]
gi|452103410|gb|AGG00350.1| Ferric iron ABC transporter, permease protein [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 419
Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/177 (29%), Positives = 88/177 (49%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R ++ F +D + ++
Sbjct: 5 VWGGAGEYGRSCYFVKNKETKIVFDCGINRSYED--SYPKIER--EAVPF---LDAVFLS 57
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G + HI
Sbjct: 58 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-MQGWDLPYNDQHIK 115
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + VQ+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 116 DLNYVCIDEI--SNPNEWVQITPTLRFQWGYSGHVLGAVWFLVDMYNTYVFYSGDYS 170
>gi|161529235|ref|YP_001583061.1| beta-lactamase domain-containing protein [Nitrosopumilus maritimus
SCM1]
gi|160340536|gb|ABX13623.1| beta-lactamase domain protein [Nitrosopumilus maritimus SCM1]
Length = 646
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 100/203 (49%), Gaps = 8/203 (3%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHM-AYNDHRQYPDFSRISKSCDFNNAID 61
+ LG +VG+S ++++ +I+ DCG++ A + +P ++ + D +D
Sbjct: 189 VSLYTLGGFGQVGRSSLLLSTPESKILIDCGINPGARSPMDAFPRLDSLNLTLD---DLD 245
Query: 62 CIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFT 121
+VI H HLDH G LP + GY GPIY T PT + ++ D KV + G ++
Sbjct: 246 AVVIGHAHLDHTGFLPTLCK-YGYKGPIYCTEPTLPMMNLIQLDAIKVAAAQ-GRTPIYS 303
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM--FYAKVGDSAMVYTGDYN 179
+ + M++ I + + D+++ AGH+LG+A+ F+ GD VY+GD
Sbjct: 304 ERDVKQIMRQTITLPYGTVTDISPDIKLVLANAGHILGSALCHFHIGNGDHNFVYSGDIK 363
Query: 180 MTPDRHLGAARIDRLQLDLLITE 202
AA + +++ L+ E
Sbjct: 364 FGKSILFEAASWNFPRVETLLIE 386
>gi|423629351|ref|ZP_17605099.1| hypothetical protein IK5_02202 [Bacillus cereus VD154]
gi|401268106|gb|EJR74161.1| hypothetical protein IK5_02202 [Bacillus cereus VD154]
Length = 436
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 88/177 (49%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R + F +D + ++
Sbjct: 22 VWGGAGEYGRSCYFVKNKETKILFDCGINRSYED--SYPKIER--EVVPF---LDAVFLS 74
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G ++ HI
Sbjct: 75 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-MQGWNLPYSDQHIK 132
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + +Q+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 133 DLNYVCIDEI--SNPNEWIQITPTLRFQWGYSGHVLGAVWFLVDMCNTYVFYSGDYS 187
>gi|297617557|ref|YP_003702716.1| RNA-metabolising metallo-beta-lactamase [Syntrophothermus
lipocalidus DSM 12680]
gi|297145394|gb|ADI02151.1| RNA-metabolising metallo-beta-lactamase [Syntrophothermus
lipocalidus DSM 12680]
Length = 532
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 92/189 (48%), Gaps = 26/189 (13%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYND--HRQYPDFSRISKSCDFNNAIDCIVI 65
LGA + V S + +NG R DCGM + R Y +F + +F +++
Sbjct: 6 LGAARTVTGSFFFMEVNGIRFAIDCGMFQGGKEVRERNYQNFVINPRDLEF------LIL 59
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDY---RKVLVDR--RGEVEQ- 119
TH H+DH G +P + G+ GPIY TY T LA IML D +++ V+R RG
Sbjct: 60 THAHIDHSGLIPKLCNL-GFKGPIYCTYATAELASIMLPDSGHIQEMEVERKNRGLTRAG 118
Query: 120 -------FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKV----G 168
+T + +C+ + V+ + + KD+Q R AGH+LG+A+ V G
Sbjct: 119 KPVLRPIYTVEEAEKCLSQFRPVNYDEMISPVKDIQFRLRDAGHILGSALVELWVTEPQG 178
Query: 169 DSAMVYTGD 177
+V+TGD
Sbjct: 179 TIKVVFTGD 187
>gi|423618074|ref|ZP_17593908.1| hypothetical protein IIO_03400 [Bacillus cereus VD115]
gi|401253805|gb|EJR60041.1| hypothetical protein IIO_03400 [Bacillus cereus VD115]
Length = 436
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 95/197 (48%), Gaps = 14/197 (7%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R K F +D + ++
Sbjct: 22 VWGGAGEYGRSCYFVKNKETKIVFDCGINRSYED--SYPKIER--KVVPF---VDAVFLS 74
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEV---EQFTSD 123
H H DH LP + GY I+ T T+ P E +R + + V +Q D
Sbjct: 75 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPAYFEKWRNYNLSQGWNVPYNDQNIKD 133
Query: 124 HIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPD 183
C+ ++ + + +Q+ L+ + Y+GHVLGA F + ++ + Y+GDY+ +
Sbjct: 134 LYYVCIDEI--SNPNEWIQITPTLRFQWGYSGHVLGAVWFLVDMCNTYVFYSGDYSAESN 191
Query: 184 RHLGAARIDRLQLDLLI 200
L A +RL+ ++ I
Sbjct: 192 I-LRANLPERLRSNIKI 207
>gi|386876012|ref|ZP_10118153.1| metallo-beta-lactamase domain protein [Candidatus Nitrosopumilus
salaria BD31]
gi|386806155|gb|EIJ65633.1| metallo-beta-lactamase domain protein [Candidatus Nitrosopumilus
salaria BD31]
Length = 421
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 94/201 (46%), Gaps = 15/201 (7%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
+D VLGA EVG+S +V NG +++ D G+ + P + K D +D
Sbjct: 1 MDVKVLGAANEVGRSGFLVNCNGTKLLLDYGV--LFGRRGSPPQYPLHVKPKD----LDA 54
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
I+ITH HLDH G +P N +Y T PT L+ +++ED K+ + F
Sbjct: 55 IIITHAHLDHSGNVPSL--FVSGNTDVYATPPTFDLSKLLIEDMLKIEKNSH----PFDL 108
Query: 123 DHIAECMKKVIAVDLKQTV-QVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+ MK + KQ V + + ++R +GHV+G + + + YTGD
Sbjct: 109 PEVNNMMKNAKEIGYKQKVTKGNATFELRE--SGHVIGGSTVLVESEKKRLFYTGDIKTH 166
Query: 182 PDRHLGAARIDRLQLDLLITE 202
R L +D ++DLLITE
Sbjct: 167 GSRMLREMDLDVGEIDLLITE 187
>gi|365874440|ref|ZP_09413973.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermanaerovibrio velox DSM 12556]
gi|363984527|gb|EHM10734.1| putative exonuclease of the beta-lactamase fold involved in RNA
processing [Thermanaerovibrio velox DSM 12556]
Length = 533
Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 92/192 (47%), Gaps = 30/192 (15%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSC--DFNNA-IDCIV 64
LGA EV SC ++ + R++ DCG+H +D D S+ SK FN A ID ++
Sbjct: 6 LGAAGEVTGSCYLLETDDYRVLVDCGIHQGKDDE----DLSKSSKGGYFPFNPANIDAVL 61
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDH 124
+TH H+DH G +P ++ G+ GP++ T T ++ D ++ R E E T +
Sbjct: 62 LTHAHMDHSGLIPLLSK-QGFKGPVFATSATVEFCDVLWRDSAHLM---REEAEWRTRKN 117
Query: 125 IAECMKKV----------------IAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVG 168
I + + V V + + +D Q+R AGH+LG+AM +G
Sbjct: 118 IRKGLPPVEPLYDDDDVDRAVRLLRPVSYDEVMHLDAGFQVRFRDAGHILGSAMIEVWLG 177
Query: 169 ---DSAMVYTGD 177
D +V++GD
Sbjct: 178 PSRDVKLVFSGD 189
>gi|260060893|ref|YP_003193973.1| hypothetical protein RB2501_04830 [Robiginitalea biformata
HTCC2501]
gi|88785025|gb|EAR16194.1| hypothetical protein RB2501_04830 [Robiginitalea biformata
HTCC2501]
Length = 458
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 60/198 (30%), Positives = 91/198 (45%), Gaps = 25/198 (12%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHR----QYPDFSRISKSCDFN 57
I+ LGA V S ++ ++I+ DCG+ + R +YP +
Sbjct: 5 TINIHFLGAAGTVTGSKYLLDTGDRKILIDCGLFQGLKELRLKNWEYPPVNVTE------ 58
Query: 58 NAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDR--RG 115
ID +++TH HLDH G LP + G+ GPIY TYPT +A I+L D K+ R
Sbjct: 59 --IDAVLLTHGHLDHTGYLPRLVK-QGFKGPIYGTYPTLDIAKIILNDSAKIQEQEAERA 115
Query: 116 EVEQFTSDHIAECM------KKVI----AVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYA 165
++ AE + +K I + L Q + + K+++ R Y GH+LGA
Sbjct: 116 NKGGYSKHSPAEPLYDLKDVEKTIPYFKGIPLNQWLPILKNVKARFQYNGHILGATYIEL 175
Query: 166 KVGDSAMVYTGDYNMTPD 183
V D V++GD T D
Sbjct: 176 DVQDKRFVFSGDIGRTND 193
>gi|46200035|ref|YP_005702.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Thermus thermophilus HB27]
gi|46197663|gb|AAS82075.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Thermus thermophilus HB27]
Length = 431
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
GA +EV S ++ G+R++ DCGM + R + F K +D +++TH
Sbjct: 6 FGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKE------VDAVLLTH 59
Query: 68 FHLDHIGALP-FFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
HLDH+G LP F E GY GP+Y T T L I+LED KV+ + F + +
Sbjct: 60 AHLDHVGRLPKLFRE--GYRGPVYATRATALLMEIVLEDALKVMDE-----PFFGPEDVE 112
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
E + + ++ + +++ L + AGH+ G+A A+ +VY+GD
Sbjct: 113 EALGHLRPLEYGEWLRLGA-LSLAFGQAGHLPGSAFVVAQGEGRTLVYSGD 162
>gi|384430336|ref|YP_005639696.1| RNA-metabolising metallo-beta-lactamase [Thermus thermophilus
SG0.5JP17-16]
gi|333965804|gb|AEG32569.1| RNA-metabolising metallo-beta-lactamase [Thermus thermophilus
SG0.5JP17-16]
Length = 431
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
GA +EV S ++ G+R++ DCGM + R + F K +D +++TH
Sbjct: 6 FGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKE------VDAVLLTH 59
Query: 68 FHLDHIGALP-FFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
HLDH+G LP F E GY GP+Y T T L I+LED KV+ + F + +
Sbjct: 60 AHLDHVGRLPKLFRE--GYRGPVYATRATALLMEIVLEDALKVMDE-----PFFGPEDVE 112
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
E + + ++ + +++ L + AGH+ G+A A+ +VY+GD
Sbjct: 113 EALGHLRPLEYGEWLRLGA-LSLAFGQAGHLPGSAFVVAQGEGRTLVYSGD 162
>gi|255513971|gb|EET90235.1| beta-lactamase domain protein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 453
Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 97/195 (49%), Gaps = 11/195 (5%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVITH 67
GA +EVG+SC++V+ I+ D G+ N + Q R+ + D +ID IV+TH
Sbjct: 28 GAAEEVGRSCLMVSTGNANILLDAGLG---NVNEQEGSEMRMPEITDETLGSIDAIVVTH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G++G +Y T PT L + + DY ++ + ++ T + +
Sbjct: 85 AHLDHC-CFVAHAYARGFSGKVYATKPTVELMKLQVADYVRI-----SKPKEITGKVLRK 138
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
I + ++ + + K +++ AGH+LG+AM G +++YTGD N+ L
Sbjct: 139 LSGSYIYSEYRKPIFI-KGVKVEFINAGHILGSAMIRLSYGGKSLLYTGDMNLQSSLVLN 197
Query: 188 AARIDRLQLDLLITE 202
A ++ + D LI E
Sbjct: 198 GADMNGISADTLIME 212
>gi|118576828|ref|YP_876571.1| exonuclease of the beta-lactamase fold [Cenarchaeum symbiosum A]
gi|118195349|gb|ABK78267.1| exonuclease of the beta-lactamase fold [Cenarchaeum symbiosum A]
Length = 417
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 96/198 (48%), Gaps = 17/198 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCG-MHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
+LGA EVG+S +V NG ++ D G M D +YP + +D I+I
Sbjct: 1 MLGAAGEVGRSGFLVGCNGTNLLLDYGIMFGRRGDPPKYPVHVK-------PRDVDSIII 53
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
TH HLDH G +P I G N Y T PT L+ +++ED K+ + V F +
Sbjct: 54 THAHLDHSGNVPSMY-ISG-NVDTYATAPTLELSKLLIEDMLKI----KSNVHIFDLPEV 107
Query: 126 AECMKKVIAVDLKQTVQV-DKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDR 184
M+ I + K+ V+ D ++R +GHV+G + + YTGD ++ R
Sbjct: 108 NSMMRSSIKIGFKEKVKRGDATFELRE--SGHVIGGGTVLVESEGRKLFYTGDIHVRGSR 165
Query: 185 HLGAARIDRLQLDLLITE 202
L A +D ++D+LITE
Sbjct: 166 MLREADLDVGEIDMLITE 183
>gi|229043545|ref|ZP_04191254.1| Zn-dependent hydrolase (Beta-lactamase superfamily) [Bacillus
cereus AH676]
gi|228725767|gb|EEL77015.1| Zn-dependent hydrolase (Beta-lactamase superfamily) [Bacillus
cereus AH676]
Length = 417
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R ++ F +D + ++
Sbjct: 3 VWGGAGEYGRSCYFVKNKETKILFDCGINRSYED--SYPKIER--EAVPF---LDAVFLS 55
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R +G ++ HI
Sbjct: 56 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNA-MQGWNLPYSDQHIK 113
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + +Q+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 114 DLNYVCIDEI--SNPNEWIQITPTLRFQWGYSGHVLGAVWFLVDMCNTYVFYSGDYS 168
>gi|381189581|ref|ZP_09897107.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Thermus sp. RL]
gi|380452551|gb|EIA40149.1| cleavage and polyadenylation specificity factor, 100 kDa subunit
[Thermus sp. RL]
Length = 431
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
GA +EV S ++ G+R++ DCGM + R + F K +D +++TH
Sbjct: 6 FGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKE------VDAVLLTH 59
Query: 68 FHLDHIGALP-FFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
HLDH+G LP F E GY GP+Y T T L I+LED KV+ + F + +
Sbjct: 60 AHLDHVGRLPKLFRE--GYRGPVYATRATALLMEIVLEDALKVMDE-----PFFGPEDVE 112
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
E + + ++ + +++ L + AGH+ G+A A+ +VY+GD
Sbjct: 113 EALGHLRPLEYGEWLRLGA-LSLAFGQAGHLPGSAFVVAQGEGRTLVYSGD 162
>gi|332797143|ref|YP_004458643.1| beta-lactamase domain-containing protein [Acidianus hospitalis W1]
gi|332694878|gb|AEE94345.1| beta-lactamase domain protein [Acidianus hospitalis W1]
Length = 421
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 95/192 (49%), Gaps = 14/192 (7%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
M+ +LG GQEVG++ + VT I+ D G++ +D +P SK +
Sbjct: 1 MSYHLKILGGGQEVGRAAIEVTGPDGSIVLDYGVNFNPDDTPNFPLQEMPSK-------V 53
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
+++H HLDH+GALP + +I G + PIY T T+ + ++L+D+ K+ G +
Sbjct: 54 KAFIVSHAHLDHVGALPIY-QISG-SKPIYGTSITKEIGELILKDFLKI----SGPRVPY 107
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+ + + + + +V +I+ AGH+ G+A+ K + YTGD N+
Sbjct: 108 EWVEVKKTLDNFNTIKYNEEFEVG-SFRIKTSSAGHIPGSAITVVKTNKGDVTYTGDINI 166
Query: 181 TPDRHLGAARID 192
T + + A +D
Sbjct: 167 TNTKLMKPADLD 178
>gi|229109245|ref|ZP_04238844.1| Zn-dependent hydrolase (Beta-lactamase superfamily) [Bacillus
cereus Rock1-15]
gi|228674255|gb|EEL29500.1| Zn-dependent hydrolase (Beta-lactamase superfamily) [Bacillus
cereus Rock1-15]
Length = 417
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 88/177 (49%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R ++ F +D + ++
Sbjct: 3 VWGGAGEYGRSCYFVKNKETKILFDCGINRSYED--SYPKIER--EAVPF---LDAVFLS 55
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R +G ++ HI
Sbjct: 56 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNA-MQGWNLPYSDQHIK 113
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + +Q+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 114 DLNYVCIDEI--SNPNEWIQITPTLRFQWGYSGHVLGAVWFLVDMCNTYVFYSGDYS 168
>gi|71906631|ref|YP_284218.1| beta-lactamase [Dechloromonas aromatica RCB]
gi|71846252|gb|AAZ45748.1| Beta-lactamase-like:RNA-metabolising metallo-beta-lactamase
[Dechloromonas aromatica RCB]
Length = 470
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 57/197 (28%), Positives = 93/197 (47%), Gaps = 29/197 (14%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN---NAIDCIV 64
LGA EV SC +V R + DCGM + RQ + ++ +F ID ++
Sbjct: 6 LGAAGEVTGSCTLVETGDIRFLVDCGMFQGGPEARQ-----KNQRALNFGFDVREIDFVL 60
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVD----------RR 114
+TH H+DH G LP + + GY GPIY T T L ++L D + RR
Sbjct: 61 LTHAHIDHSGLLPRLS-MLGYRGPIYATPATIDLLEVLLPDSAHIQEKESEWQLRNRHRR 119
Query: 115 GEVEQ------FTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVG 168
G+ E+ +T + +K + V +++Q + + +R + AGH+LG+A V
Sbjct: 120 GKGERGIAPPLYTVEQALASLKLLQPVSYGESLQPAESVSVRFHDAGHILGSAWLEVMVS 179
Query: 169 DSA----MVYTGDYNMT 181
+ +V++GD M+
Sbjct: 180 NEGKPRRLVFSGDLGMS 196
>gi|255311954|pdb|3IE2|A Chain A, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311955|pdb|3IE2|B Chain B, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311956|pdb|3IE2|C Chain C, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311957|pdb|3IE2|D Chain D, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 83.2 bits (204), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
GA +EV S ++ G+R++ DCGM + R + F K +D +++TH
Sbjct: 6 FGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKE------VDAVLLTH 59
Query: 68 FHLDHIGALP-FFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
HLDH+G LP F E GY GP+Y T T L I+LED KV+ + F + +
Sbjct: 60 AHLDHVGRLPKLFRE--GYRGPVYATRATVLLMEIVLEDALKVMDE-----PFFGPEDVE 112
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
E + + ++ + +++ L + AGH+ G+A A+ +VY+GD
Sbjct: 113 EALGHLRPLEYGEWLRLGA-LSLAFGQAGHLPGSAFVVAQGEGRTLVYSGD 162
>gi|194745794|ref|XP_001955372.1| GF16269 [Drosophila ananassae]
gi|190628409|gb|EDV43933.1| GF16269 [Drosophila ananassae]
Length = 756
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 13/190 (6%)
Query: 18 CVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALP 77
C ++ I+ RI+ DCG D + P+F + K + +D ++++H H+GALP
Sbjct: 20 CYILQIDDVRILLDCGW-----DEKFDPNFIKELKRQ--VHTLDAVLLSHPDAYHLGALP 72
Query: 78 FFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDL 137
+ G N PIY T P + + + D + G+ + F+ D + +K+ +
Sbjct: 73 YLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFN-MGDFDLFSLDDVDTAFEKITQLKY 131
Query: 138 KQTVQVDKD---LQIRAYYAGHVLGAAMFY-AKVGDSAMVYTGDYNMTPDRHLGAARIDR 193
QTV + + I AGH++G ++ KVG+ +VY D+N +RHL +DR
Sbjct: 132 NQTVSLKGKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDR 191
Query: 194 LQL-DLLITE 202
LQ LLIT+
Sbjct: 192 LQRPSLLITD 201
>gi|159901774|ref|YP_001548019.1| beta-lactamase domain-containing protein [Herpetosiphon aurantiacus
DSM 785]
gi|159894813|gb|ABX07891.1| beta-lactamase domain protein [Herpetosiphon aurantiacus DSM 785]
Length = 830
Score = 83.2 bits (204), Expect = 6e-14, Method: Composition-based stats.
Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 15/204 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMH-MAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
G QEVG SC ++ + + I+ D GM A + PD + +D I+IT
Sbjct: 51 FGGAQEVGASCGILKLGMRHILVDAGMRPAARPGQSRTPDLEALK-----GFPLDAILIT 105
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVL----VDRRGEVEQFTS 122
H H+DH G LP + PIY T T AL I+L D +++ + E +
Sbjct: 106 HAHIDHTGCLPLVASLFP-TVPIYATESTIALMRILLLDSARIMEQEHLAHELETPLYDQ 164
Query: 123 DHIAECMKKVIAVDLKQT---VQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ E + ++I V Q V ++++ + AGH+LGA M + ++++TGD +
Sbjct: 165 AMVTETLARIIPVAFHQELRPVAANQEISVTYLPAGHILGAGMLHITSPWGSILHTGDIS 224
Query: 180 MTPDRHLGAARIDRL-QLDLLITE 202
+ R + ++ L Q+D++I E
Sbjct: 225 VGHHRTITGVDLNTLPQVDMMICE 248
>gi|255311938|pdb|3IDZ|A Chain A, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311939|pdb|3IDZ|B Chain B, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311940|pdb|3IDZ|C Chain C, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311941|pdb|3IDZ|D Chain D, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
GA +EV S ++ G+R++ DCGM + R + F K +D +++TH
Sbjct: 6 FGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKE------VDAVLLTH 59
Query: 68 FHLDHIGALP-FFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
HLDH+G LP F E GY GP+Y T T L I+LED KV+ + F + +
Sbjct: 60 AHLDHVGRLPKLFRE--GYRGPVYATRATVLLMEIVLEDALKVMDE-----PFFGPEDVE 112
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
E + + ++ + +++ L + AGH+ G+A A+ +VY+GD
Sbjct: 113 EALGHLRPLEYGEWLRLGA-LSLAFGQAGHLPGSAFVVAQGEGRTLVYSGD 162
>gi|294951947|ref|XP_002787178.1| cleavage and polyadenylation specificity factor protein, putative
[Perkinsus marinus ATCC 50983]
gi|239901882|gb|EER18974.1| cleavage and polyadenylation specificity factor protein, putative
[Perkinsus marinus ATCC 50983]
Length = 606
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 69/263 (26%), Positives = 106/263 (40%), Gaps = 77/263 (29%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGK--------RIMFDCGMHMA------YNDHRQ----- 43
I+ VLGAG+ VG+SCV+VT RI+ DCG +++ + D +Q
Sbjct: 15 IEVDVLGAGRSVGRSCVLVTFVPPASSCKPRVRILLDCGANVSCGDPAHHEDEKQHSVVA 74
Query: 44 --------------------------------------------YPDFSRISKSCDFNNA 59
+PD S+
Sbjct: 75 EHADDDDSDSVEDSSATTPQQLLRSVIRQSLAKHRHRVPMLDRLWPDNSKTGML-----P 129
Query: 60 IDCIVITHFHLDHIGALPFFTEIC----GYNGPIYMTYPTRALAPIMLEDYRKVLVDRRG 115
+D +++THFHLDH GALP+ TE+ + I M+ T+ AP++L DY K
Sbjct: 130 LDAVLVTHFHLDHTGALPYLTEVLMSGQRRSPEIVMSLMTKLTAPMLLRDYAK-----EQ 184
Query: 116 EVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYT 175
+ HI C +K + + + + AY AGHV+GA MF + + YT
Sbjct: 185 SPPPYYPCHIESCFEKALVMAPGSQRTLTCGAVVTAYPAGHVVGALMFMIEYEGLTLFYT 244
Query: 176 GDYNMTPDRHLGAARIDRLQLDL 198
GD++ + + AA + QL L
Sbjct: 245 GDFSTQAEFTMPAANLLTRQLPL 267
>gi|255311946|pdb|3IE1|A Chain A, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
gi|255311947|pdb|3IE1|B Chain B, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
gi|255311948|pdb|3IE1|C Chain C, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
gi|255311949|pdb|3IE1|D Chain D, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
Length = 431
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
GA +EV S ++ G+R++ DCGM + R + F K +D +++TH
Sbjct: 6 FGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKE------VDAVLLTH 59
Query: 68 FHLDHIGALP-FFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
HLDH+G LP F E GY GP+Y T T L I+LED KV+ + F + +
Sbjct: 60 AHLDHVGRLPKLFRE--GYRGPVYATRATVLLMEIVLEDALKVMDE-----PFFGPEDVE 112
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
E + + ++ + +++ L + AGH+ G+A A+ +VY+GD
Sbjct: 113 EALGHLRPLEYGEWLRLGA-LSLAFGQAGHLPGSAFVVAQGEGRTLVYSGD 162
>gi|255311942|pdb|3IE0|A Chain A, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311943|pdb|3IE0|B Chain B, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311944|pdb|3IE0|C Chain C, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
gi|255311945|pdb|3IE0|D Chain D, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
GA +EV S ++ G+R++ DCGM + R + F K +D +++TH
Sbjct: 6 FGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKE------VDAVLLTH 59
Query: 68 FHLDHIGALP-FFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
HLDH+G LP F E GY GP+Y T T L I+LED KV+ + F + +
Sbjct: 60 AHLDHVGRLPKLFRE--GYRGPVYATRATVLLMEIVLEDALKVMDE-----PFFGPEDVE 112
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
E + + ++ + +++ L + AGH+ G+A A+ +VY+GD
Sbjct: 113 EALGHLRPLEYGEWLRLGA-LSLAFGQAGHLPGSAFVVAQGEGRTLVYSGD 162
>gi|55980221|ref|YP_143518.1| metallo-beta-lactamase [Thermus thermophilus HB8]
gi|81600562|sp|Q5SLP1.1|RNSE_THET8 RecName: Full=Ribonuclease TTHA0252
gi|301598475|pdb|3IEK|A Chain A, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
gi|301598476|pdb|3IEK|B Chain B, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
gi|301598477|pdb|3IEK|C Chain C, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
gi|301598478|pdb|3IEK|D Chain D, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
gi|301598479|pdb|3IEL|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
gi|301598480|pdb|3IEL|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
gi|301598481|pdb|3IEL|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
gi|301598482|pdb|3IEL|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
gi|301598483|pdb|3IEM|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
gi|301598484|pdb|3IEM|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
gi|301598485|pdb|3IEM|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
gi|301598486|pdb|3IEM|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
gi|55771634|dbj|BAD70075.1| metallo-beta-lactamase superfamily protein [Thermus thermophilus
HB8]
Length = 431
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
GA +EV S ++ G+R++ DCGM + R + F K +D +++TH
Sbjct: 6 FGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKE------VDAVLLTH 59
Query: 68 FHLDHIGALP-FFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
HLDH+G LP F E GY GP+Y T T L I+LED KV+ + F + +
Sbjct: 60 AHLDHVGRLPKLFRE--GYRGPVYATRATVLLMEIVLEDALKVMDE-----PFFGPEDVE 112
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
E + + ++ + +++ L + AGH+ G+A A+ +VY+GD
Sbjct: 113 EALGHLRPLEYGEWLRLGA-LSLAFGQAGHLPGSAFVVAQGEGRTLVYSGD 162
>gi|423435272|ref|ZP_17412253.1| hypothetical protein IE9_01453 [Bacillus cereus BAG4X12-1]
gi|401125510|gb|EJQ33270.1| hypothetical protein IE9_01453 [Bacillus cereus BAG4X12-1]
Length = 436
Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 89/177 (50%), Gaps = 15/177 (8%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
V G E G+SC V +I+FDCG++ +Y D YP R ++ F +D + ++
Sbjct: 22 VWGGAGEYGRSCYFVKNKETKIVFDCGINRSYED--GYPKIER--EAVPF---LDAVFLS 74
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
H H DH LP + GY I+ T T+ P+ E +R V +G ++ HI
Sbjct: 75 HIHEDHTMGLPLLAKY-GYKKKIWTTRYTKEQLPLYYEKWRNYNV-MQGWNLPYSDQHIK 132
Query: 127 E----CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYN 179
+ C+ ++ + + +Q+ L+ + Y+GHVLGA F + ++ + Y+GDY+
Sbjct: 133 DLNYVCIDEI--SNPNEWLQITPTLRFQWGYSGHVLGAVWFLVDMCNTYVFYSGDYS 187
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.327 0.141 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,144,151,100
Number of Sequences: 23463169
Number of extensions: 122788680
Number of successful extensions: 361320
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1081
Number of HSP's successfully gapped in prelim test: 4907
Number of HSP's that attempted gapping in prelim test: 352457
Number of HSP's gapped (non-prelim): 6289
length of query: 202
length of database: 8,064,228,071
effective HSP length: 135
effective length of query: 67
effective length of database: 9,191,667,552
effective search space: 615841725984
effective search space used: 615841725984
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 73 (32.7 bits)