BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039453
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GUU3|CPS3B_ARATH Cleavage and polyadenylation specificity factor subunit 3-II
OS=Arabidopsis thaliana GN=CPSF73-II PE=1 SV=2
Length = 613
Score = 361 bits (927), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 163/202 (80%), Positives = 189/202 (93%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
MAIDCLVLGAGQE+GKSCVVVTINGK+IMFDCGMHM +DH +YP+FS ISKS DF+NAI
Sbjct: 1 MAIDCLVLGAGQEIGKSCVVVTINGKKIMFDCGMHMGCDDHNRYPNFSLISKSGDFDNAI 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
CI+ITHFH+DH+GALP+FTE+CGYNGPIYM+YPT+AL+P+MLEDYR+V+VDRRGE E F
Sbjct: 61 SCIIITHFHMDHVGALPYFTEVCGYNGPIYMSYPTKALSPLMLEDYRRVMVDRRGEEELF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T+ HIA CMKKVIA+DLKQT+QVD+DLQIRAYYAGHVLGA M YAK+GD+A+VYTGDYNM
Sbjct: 121 TTTHIANCMKKVIAIDLKQTIQVDEDLQIRAYYAGHVLGAVMVYAKMGDAAIVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
T DRHLGAA+IDRLQLDLLI+E
Sbjct: 181 TTDRHLGAAKIDRLQLDLLISE 202
>sp|Q54YL3|INT11_DICDI Integrator complex subunit 11 homolog OS=Dictyostelium discoideum
GN=ints11 PE=3 SV=1
Length = 744
Score = 315 bits (806), Expect = 2e-85, Method: Composition-based stats.
Identities = 137/202 (67%), Positives = 170/202 (84%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAI 60
M I + LGAGQ+VG+SCV+VTI K IMFDCGMHM ND R++PDFS ISK+ F I
Sbjct: 1 MTIKVVPLGAGQDVGRSCVIVTIGNKNIMFDCGMHMGMNDARRFPDFSYISKNGQFTKVI 60
Query: 61 DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQF 120
DC++ITHFHLDH GALPFFTE+CGY+GPIYMT PT+A+ PI+LEDYRK+ V+++GE F
Sbjct: 61 DCVIITHFHLDHCGALPFFTEMCGYDGPIYMTLPTKAICPILLEDYRKITVEKKGETNFF 120
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
T+ I +CMKKVI V+L QT++VD++L I+AYYAGHVLGAAMFYAKVGD ++VYTGDYNM
Sbjct: 121 TAQMIKDCMKKVIPVNLHQTIKVDEELSIKAYYAGHVLGAAMFYAKVGDESVVYTGDYNM 180
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
TPDRHLG+A ID+++ D+LITE
Sbjct: 181 TPDRHLGSAWIDQVKPDVLITE 202
>sp|Q3MHC2|INT11_RAT Integrator complex subunit 11 OS=Rattus norvegicus GN=Cpsf3l PE=2
SV=1
Length = 600
Score = 289 bits (740), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 128/195 (65%), Positives = 165/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I+GK +M DCGMHM YND R++PDFS I++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>sp|Q9CWS4|INT11_MOUSE Integrator complex subunit 11 OS=Mus musculus GN=Cpsf3l PE=2 SV=1
Length = 600
Score = 289 bits (740), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 128/195 (65%), Positives = 165/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I+GK +M DCGMHM YND R++PDFS I++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSISGKNVMLDCGMHMGYNDDRRFPDFSYITQSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>sp|Q5ZIH0|INT11_CHICK Integrator complex subunit 11 OS=Gallus gallus GN=CPSF3L PE=2 SV=1
Length = 600
Score = 288 bits (738), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 129/200 (64%), Positives = 166/200 (83%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V+I GK +M DCGMHM YND R++PDFS I+++ + +DC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGYNDDRRFPDFSYITQNGRLTDFLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS
Sbjct: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTKAICPILLEDYRKITVDKKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKV+AV L QTVQVD++L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVVAVHLHQTVQVDEELEIKAYYAGHVLGAAMFQIKVGCESVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + DLLITE
Sbjct: 184 DRHLGAAWIDKCRPDLLITE 203
>sp|Q5NVE6|INT11_PONAB Integrator complex subunit 11 OS=Pongo abelii GN=CPSF3L PE=2 SV=2
Length = 600
Score = 286 bits (731), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>sp|Q5TA45|INT11_HUMAN Integrator complex subunit 11 OS=Homo sapiens GN=CPSF3L PE=1 SV=2
Length = 600
Score = 286 bits (731), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 164/195 (84%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM +ND R++PDFS I+++ + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT+PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + +LLITE
Sbjct: 189 AAWIDKCRPNLLITE 203
>sp|Q2YDM2|INT11_BOVIN Integrator complex subunit 11 OS=Bos taurus GN=CPSF3L PE=2 SV=2
Length = 599
Score = 281 bits (718), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 125/195 (64%), Positives = 161/195 (82%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQ+VG+SC++V+I GK +M DCGMHM ++D R++PDFS ++S + +DC++I+H
Sbjct: 9 LGAGQDVGRSCILVSIAGKNVMLDCGMHMGFSDDRRFPDFSYNTRSGRLTDFLDCVIISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F+E+ GY+GPIYMT PT+A+ PI+LEDYRK+ VD++GE FTS I +
Sbjct: 69 FHLDHCGALPYFSEMVGYDGPIYMTQPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKD 128
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
CMKKV+AV L QTVQVD +L+I+AYYAGHVLGAAMF KVG ++VYTGDYNMTPDRHLG
Sbjct: 129 CMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMTPDRHLG 188
Query: 188 AARIDRLQLDLLITE 202
AA ID+ + LLITE
Sbjct: 189 AAWIDKCRPSLLITE 203
>sp|Q503E1|INT11_DANRE Integrator complex subunit 11 OS=Danio rerio GN=cpsf3l PE=2 SV=1
Length = 598
Score = 278 bits (712), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 162/200 (81%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I LGAGQ+VG+SC++V+I GK IM DCGMHM +ND R++PDFS I+++ +DC
Sbjct: 4 IKVTPLGAGQDVGRSCILVSIGGKNIMLDCGMHMGFNDDRRFPDFSYITQNGRLTEFLDC 63
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
++I+HFHLDH GALP+ +E+ GY+GPIYMT+PT+A+ PI+LED+RK+ VD++GE FTS
Sbjct: 64 VIISHFHLDHCGALPYMSEMVGYDGPIYMTHPTKAICPILLEDFRKITVDKKGETNFFTS 123
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
I +CMKKV+ ++L QTVQVD +L+I+AYYAGHVLGAAM KVG ++VYTGDYNMTP
Sbjct: 124 QMIKDCMKKVVPLNLHQTVQVDDELEIKAYYAGHVLGAAMVQIKVGSESVVYTGDYNMTP 183
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHLGAA ID+ + D+LI+E
Sbjct: 184 DRHLGAAWIDKCRPDILISE 203
>sp|Q9C952|CPSF3_ARATH Cleavage and polyadenylation specificity factor subunit 3-I
OS=Arabidopsis thaliana GN=CPSF73-I PE=1 SV=1
Length = 693
Score = 157 bits (398), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 84/197 (42%), Positives = 119/197 (60%), Gaps = 11/197 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SCV ++ GK I+FDCG+H AY+ P F I S +ID ++ITH
Sbjct: 27 LGAGSEVGRSCVYMSFRGKNILFDCGIHPAYSGMAALPYFDEIDPS-----SIDVLLITH 81
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTSDHI 125
FH+DH +LP+F E +NG ++MT+ T+A+ ++L DY KV + VE F I
Sbjct: 82 FHIDHAASLPYFLEKTTFNGRVFMTHATKAIYKLLLTDYVKV---SKVSVEDMLFDEQDI 138
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
+ M K+ +D QTV+V+ ++ Y AGHVLGAAMF + ++YTGDY+ DRH
Sbjct: 139 NKSMDKIEVIDFHQTVEVN-GIKFWCYTAGHVLGAAMFMVDIAGVRILYTGDYSREEDRH 197
Query: 186 LGAARIDRLQLDLLITE 202
L AA + + D+ I E
Sbjct: 198 LRAAELPQFSPDICIIE 214
>sp|Q86A79|CPSF3_DICDI Cleavage and polyadenylation specificity factor subunit 3
OS=Dictyostelium discoideum GN=cpsf3 PE=3 SV=1
Length = 774
Score = 147 bits (371), Expect = 5e-35, Method: Composition-based stats.
Identities = 72/195 (36%), Positives = 116/195 (59%), Gaps = 4/195 (2%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
+G+G EVG+SCV++ GK++MFDCG+H AY+ P F I ID ++++H
Sbjct: 41 IGSGSEVGRSCVLLKYKGKKVMFDCGVHPAYSGLVSLPFFDSIESDIP---DIDLLLVSH 97
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH A+P+F + G ++MT+PT+A+ ++L DY KV R + F +
Sbjct: 98 FHLDHAAAVPYFVGKTKFKGRVFMTHPTKAIYGMLLSDYVKVSNITRDDDMLFDKSDLDR 157
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
++K+ V +Q V+ +++ + AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 158 SLEKIEKVRYRQKVE-HNGIKVTCFNAGHVLGAAMFMIEIAGVKILYTGDFSRQEDRHLM 216
Query: 188 AARIDRLQLDLLITE 202
A +++D+LI E
Sbjct: 217 GAETPPVKVDVLIIE 231
>sp|Q9UKF6|CPSF3_HUMAN Cleavage and polyadenylation specificity factor subunit 3 OS=Homo
sapiens GN=CPSF3 PE=1 SV=1
Length = 684
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>sp|Q9QXK7|CPSF3_MOUSE Cleavage and polyadenylation specificity factor subunit 3 OS=Mus
musculus GN=Cpsf3 PE=1 SV=2
Length = 684
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>sp|P79101|CPSF3_BOVIN Cleavage and polyadenylation specificity factor subunit 3 OS=Bos
taurus GN=CPSF3 PE=2 SV=1
Length = 684
Score = 142 bits (359), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 114/195 (58%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAGQEVG+SC+++ G++IM DCG+H P I + ID ++I+H
Sbjct: 17 LGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPA-----EIDLLLISH 71
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH GALP+F + + G +MT+ T+A+ +L DY KV + + +T + E
Sbjct: 72 FHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKV-SNISADDMLYTETDLEE 130
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
M K+ ++ + +V ++ Y+AGHVLGAAMF ++ ++YTGD++ DRHL
Sbjct: 131 SMDKIETINFHEVKEV-AGIKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQEDRHLM 189
Query: 188 AARIDRLQLDLLITE 202
AA I ++ D+LI E
Sbjct: 190 AAEIPNIKPDILIIE 204
>sp|O13794|YSH1_SCHPO Endoribonuclease ysh1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ysh1 PE=3 SV=2
Length = 757
Score = 141 bits (355), Expect = 4e-33, Method: Composition-based stats.
Identities = 71/195 (36%), Positives = 113/195 (57%), Gaps = 7/195 (3%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LGAG EVG+SC V+ GK +M D G+H AY P F S +D ++I+H
Sbjct: 24 LGAGNEVGRSCHVIQYKGKTVMLDAGVHPAYTGLSALPFFDEFDLS-----TVDVLLISH 78
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
FHLDH+ +LP+ + + G ++MT+PT+A+ +L DY KV + E + + +
Sbjct: 79 FHLDHVASLPYVMQKTNFRGRVFMTHPTKAVCKWLLSDYVKV-SNVGMEDQLYDEKDLLA 137
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLG 187
++ AVD T++V+ ++ Y+AGHVLGA M++ ++ +++TGDY+ DRHL
Sbjct: 138 AFDRIEAVDYHSTIEVE-GIKFTPYHAGHVLGACMYFVEMAGVNILFTGDYSREEDRHLH 196
Query: 188 AARIDRLQLDLLITE 202
A + + D+LITE
Sbjct: 197 VAEVPPKRPDVLITE 211
>sp|Q6C2Z7|YSH1_YARLI Endoribonuclease YSH1 OS=Yarrowia lipolytica (strain CLIB 122 / E
150) GN=YSH1 PE=3 SV=2
Length = 827
Score = 139 bits (351), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 115/197 (58%), Gaps = 6/197 (3%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVI 65
+ LG G+EVG+SC V++ GK IM D G+H A++ P + S ID ++I
Sbjct: 40 VALGGGREVGRSCHVISFKGKTIMLDAGVHPAHSGLASLPFYDEFDLST-----IDILLI 94
Query: 66 THFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHI 125
+HFHLDH +LP+ + + G ++MT+PT+ + +L D+ +V + + ++ +
Sbjct: 95 SHFHLDHAASLPYVMQKTNFKGRVFMTHPTKGIYRWLLSDFVRVTSGAESDPDLYSEADL 154
Query: 126 AECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRH 185
K+ +D T++V+ ++ AY+AGHVLGAAM+ +VG +++TGDY+ DRH
Sbjct: 155 TASFNKIETIDYHSTMEVN-GVKFTAYHAGHVLGAAMYTIEVGGVKVLFTGDYSREEDRH 213
Query: 186 LGAARIDRLQLDLLITE 202
L A + ++ D+LI E
Sbjct: 214 LNQAEVPPMKPDILICE 230
>sp|Q74ZC0|YSH1_ASHGO Endoribonuclease YSH1 OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=YSH1 PE=3 SV=2
Length = 771
Score = 136 bits (343), Expect = 9e-32, Method: Composition-based stats.
Identities = 72/201 (35%), Positives = 113/201 (56%), Gaps = 12/201 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ GK +M D G+H A+ P + S ++ ++I+H
Sbjct: 16 LGGSNEVGRSCHILQYKGKTVMLDAGVHPAHQGIASLPFYDEFDLS-----QVEVLLISH 70
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLV---DRRGEVEQ---FT 121
FHLDH +LP+ + + G ++MT+PT+A+ +L D+ KV D G V +T
Sbjct: 71 FHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLSDFVKVTNIGNDNAGGVSDENLYT 130
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+ +AE ++ VD T+ V+ ++ AY+AGHVLGAAMF ++ +++TGDY+
Sbjct: 131 DEDLAESFDRIETVDYHSTIDVN-GIKFTAYHAGHVLGAAMFQVEIAGLRILFTGDYSRE 189
Query: 182 PDRHLGAARIDRLQLDLLITE 202
DRHL +A I L D+LI E
Sbjct: 190 LDRHLNSAEIPTLPSDILIVE 210
>sp|Q59P50|YSH1_CANAL Endoribonuclease YSH1 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=YSH1 PE=3 SV=1
Length = 870
Score = 136 bits (342), Expect = 1e-31, Method: Composition-based stats.
Identities = 68/204 (33%), Positives = 118/204 (57%), Gaps = 15/204 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM D GMH A + H +P F S +D ++I+H
Sbjct: 105 LGGCNEVGRSCHIIEYKNKVIMLDSGMHPALSGHASFPYFDEYDIS-----KVDILLISH 159
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV--LVDRRGE-------VE 118
FH+DH +LP+ + + G ++MT+ T+A+ +++D+ +V + + R E
Sbjct: 160 FHVDHSASLPYVMQQSNFRGKVFMTHATKAIYRWLMQDFVRVTSIGNSRSEDGGGGEGSN 219
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDY 178
+T D I + ++ +D T+++D ++ AY+AGHVLGA M++ ++G +++TGDY
Sbjct: 220 LYTDDDIMKSFDRIETIDYHSTMEID-GIRFTAYHAGHVLGACMYFIEIGGLKVLFTGDY 278
Query: 179 NMTPDRHLGAARIDRLQLDLLITE 202
+ +RHL AA + L+ D+LI+E
Sbjct: 279 SREENRHLHAAEVPPLKPDILISE 302
>sp|Q6FUA5|YSH1_CANGA Endoribonuclease YSH1 OS=Candida glabrata (strain ATCC 2001 / CBS
138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=YSH1 PE=3
SV=1
Length = 771
Score = 134 bits (338), Expect = 3e-31, Method: Composition-based stats.
Identities = 69/201 (34%), Positives = 116/201 (57%), Gaps = 13/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIVIT 66
LG G EVG+SC ++ GK IM D G+H AY P + DF+ + +D ++I+
Sbjct: 15 LGGGNEVGRSCHIIQFKGKTIMLDAGIHPAYQGMASLPFYD------DFDLSIVDVLLIS 68
Query: 67 HFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV--LVDRRGEVEQ---FT 121
HFHLDH +LP+ + + G ++MT+PT+A+ +L D+ +V + + E ++
Sbjct: 69 HFHLDHAASLPYVMQKTNFKGRVFMTHPTKAIYRWLLRDFVRVTSIGSQSSNAEDDNLYS 128
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
++ + E K+ +D + V+ ++ A++AGHVLGAAMF ++ +++TGDY+
Sbjct: 129 NEDLIESFDKIETIDYHSMIDVN-GIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSRE 187
Query: 182 PDRHLGAARIDRLQLDLLITE 202
DRHL +A + L D+LI E
Sbjct: 188 IDRHLNSAEVPPLPSDILIVE 208
>sp|Q4PEJ3|YSH1_USTMA Endoribonuclease YSH1 OS=Ustilago maydis (strain 521 / FGSC 9021)
GN=YSH1 PE=3 SV=1
Length = 880
Score = 134 bits (337), Expect = 4e-31, Method: Composition-based stats.
Identities = 74/200 (37%), Positives = 113/200 (56%), Gaps = 11/200 (5%)
Query: 7 VLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVIT 66
+LGAGQEVG+SC V+ GK I+ D G+H A+ P + S +D I+IT
Sbjct: 28 MLGAGQEVGRSCCVLKYRGKTIVCDTGVHPAFTGIAALPFIDELDWS-----TVDAILIT 82
Query: 67 HFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ-FTS 122
HFHLDH AL + E + +G +YMT+PT+A+ ++ D+ V + G + F
Sbjct: 83 HFHLDHAAALTYIMEKTNFRDGHGKVYMTHPTKAVYRFLMSDF--VRISNAGNDDNLFDE 140
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
+ + +++ AVD Q V + L+ +Y+AGHVLGA MF ++ ++YTGD++
Sbjct: 141 NEMLASWRQIEAVDFHQDVSIAGGLRFTSYHAGHVLGACMFLIEIAGLRILYTGDFSREE 200
Query: 183 DRHLGAARIDRLQLDLLITE 202
DRHL A I ++ D+LI E
Sbjct: 201 DRHLVQAEIPPVKPDVLICE 220
>sp|Q6CUI5|YSH1_KLULA Endoribonuclease YSH1 OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=YSH1 PE=3 SV=1
Length = 764
Score = 130 bits (327), Expect = 5e-30, Method: Composition-based stats.
Identities = 67/201 (33%), Positives = 114/201 (56%), Gaps = 12/201 (5%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ GK +M D G+H A+ P + S ID ++I+H
Sbjct: 19 LGGSNEVGRSCHILQYKGKTLMLDAGIHPAHQGLASLPYYDEFDLS-----TIDLLLISH 73
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV--LVDRRGEVEQ----FT 121
FHLDH +LP+ + + G ++MT+PT+A+ +L D+ KV + D G+ ++
Sbjct: 74 FHLDHAASLPYVMQRTNFRGRVFMTHPTKAIYRWLLNDFVKVTSIGDSPGQDSSNDNLYS 133
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
+ +AE ++ +D T++V+ ++ A++AGHVLGAAMF ++ +++TGDY+
Sbjct: 134 DEDLAESFDRIETIDYHSTMEVN-GIKFTAFHAGHVLGAAMFQIEIAGVRVLFTGDYSRE 192
Query: 182 PDRHLGAARIDRLQLDLLITE 202
DRHL +A + D++I E
Sbjct: 193 VDRHLNSAEVPPQSSDVIIVE 213
>sp|Q06224|YSH1_YEAST Endoribonuclease YSH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YSH1 PE=1 SV=1
Length = 779
Score = 130 bits (326), Expect = 8e-30, Method: Composition-based stats.
Identities = 68/202 (33%), Positives = 112/202 (55%), Gaps = 13/202 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ GK +M D G+H AY P + S +D ++I+H
Sbjct: 14 LGGSNEVGRSCHILQYKGKTVMLDAGIHPAYQGLASLPFYDEFDLS-----KVDILLISH 68
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV-----LVDRRGEVEQ--F 120
FHLDH +LP+ + + G ++MT+PT+A+ +L D+ +V G ++ F
Sbjct: 69 FHLDHAASLPYVMQRTNFQGRVFMTHPTKAIYRWLLRDFVRVTSIGSSSSSMGTKDEGLF 128
Query: 121 TSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNM 180
+ + + + K+ VD TV V+ ++ A++AGHVLGAAMF ++ +++TGDY+
Sbjct: 129 SDEDLVDSFDKIETVDYHSTVDVN-GIKFTAFHAGHVLGAAMFQIEIAGLRVLFTGDYSR 187
Query: 181 TPDRHLGAARIDRLQLDLLITE 202
DRHL +A + L ++LI E
Sbjct: 188 EVDRHLNSAEVPPLSSNVLIVE 209
>sp|Q6BMW3|YSH1_DEBHA Endoribonuclease YSH1 OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=YSH1 PE=3
SV=2
Length = 815
Score = 127 bits (320), Expect = 4e-29, Method: Composition-based stats.
Identities = 67/210 (31%), Positives = 111/210 (52%), Gaps = 21/210 (10%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG EVG+SC ++ K IM D G+H P + S +D ++++H
Sbjct: 19 LGGCNEVGRSCHIIEYKNKVIMLDAGVHPGLQGLSSLPFYDEYDLS-----KVDILLVSH 73
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLV-----DRR-------- 114
FHLDH +LP+ + +NG ++MT+ T+A+ +L D+ KV D R
Sbjct: 74 FHLDHAASLPYVMQHTNFNGRVFMTHATKAIYRWLLSDFVKVTSIGGGSDARLNNSDPNA 133
Query: 115 --GEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAM 172
G +T D + ++ +D T+++D ++ AY+AGHVLGA M++ ++G +
Sbjct: 134 NTGSSNLYTDDDLMRSFDRIETIDYHSTIELD-GIRFTAYHAGHVLGACMYFIEIGGLKV 192
Query: 173 VYTGDYNMTPDRHLGAARIDRLQLDLLITE 202
++TGDY+ DRHL A + ++ D+LITE
Sbjct: 193 LFTGDYSSEEDRHLQVAEVPPIKPDILITE 222
>sp|P0CM88|YSH1_CRYNJ Endoribonuclease YSH1 OS=Cryptococcus neoformans var. neoformans
serotype D (strain JEC21 / ATCC MYA-565) GN=YSH1 PE=3
SV=1
Length = 773
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 11/206 (5%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
++ +LGAGQEVG+SC V+ GK+I+ D G+H A P + S +D
Sbjct: 28 SLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIGALPFIDELDWST-----VD 82
Query: 62 CIVITHFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVE 118
++ITHFH+DH ALP+ E + NG +YMT+ T+A+ + + D + L D+ +
Sbjct: 83 AMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVR-LNDQNPDTS 141
Query: 119 QFTSDH--IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
D + + IAVD Q + + L+ Y+AGHVLGA+MF ++ ++YTG
Sbjct: 142 GRLYDEADVQSSWQSTIAVDYHQDIVIAGGLRFTPYHAGHVLGASMFLIEIAGLKILYTG 201
Query: 177 DYNMTPDRHLGAARIDRLQLDLLITE 202
DY+ DRHL A I ++ D++I E
Sbjct: 202 DYSREEDRHLVMAEIPPVKPDVMICE 227
>sp|P0CM89|YSH1_CRYNB Endoribonuclease YSH1 OS=Cryptococcus neoformans var. neoformans
serotype D (strain B-3501A) GN=YSH1 PE=3 SV=1
Length = 773
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/206 (35%), Positives = 113/206 (54%), Gaps = 11/206 (5%)
Query: 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61
++ +LGAGQEVG+SC V+ GK+I+ D G+H A P + S +D
Sbjct: 28 SLTITMLGAGQEVGRSCCVIEHRGKKIVCDAGLHPAQPGIGALPFIDELDWST-----VD 82
Query: 62 CIVITHFHLDHIGALPFFTEICGY---NGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVE 118
++ITHFH+DH ALP+ E + NG +YMT+ T+A+ + + D + L D+ +
Sbjct: 83 AMLITHFHVDHAAALPYIMEKTNFKDGNGKVYMTHATKAIYGLTMMDTVR-LNDQNPDTS 141
Query: 119 QFTSDH--IAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
D + + IAVD Q + + L+ Y+AGHVLGA+MF ++ ++YTG
Sbjct: 142 GRLYDEADVQSSWQSTIAVDYHQDIVIAGGLRFTPYHAGHVLGASMFLIEIAGLKILYTG 201
Query: 177 DYNMTPDRHLGAARIDRLQLDLLITE 202
DY+ DRHL A I ++ D++I E
Sbjct: 202 DYSREEDRHLVMAEIPPVKPDVMICE 227
>sp|Q4IPN9|YSH1_GIBZE Endoribonuclease YSH1 OS=Gibberella zeae (strain PH-1 / ATCC
MYA-4620 / FGSC 9075 / NRRL 31084) GN=YSH1 PE=3 SV=2
Length = 833
Score = 123 bits (308), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 11/201 (5%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P + DF+ + +D ++
Sbjct: 28 LCLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFYD------DFDLSTVDVLL 81
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--FTS 122
I+HFH+DH +LP+ + G ++MT+PT+A+ +++D +V Q +T
Sbjct: 82 ISHFHIDHAASLPYVLAKTNFRGRVFMTHPTKAIYKWLIQDSVRVGNTSSNPTTQPVYTE 141
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
++ A+D T ++I Y AGHVLGAAMF ++ + +TGDY+
Sbjct: 142 QDHLNTFPQIEAIDY-HTTHTISSIRITPYPAGHVLGAAMFLIEIAGLNIFFTGDYSREQ 200
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL +A + + +++D+LITE
Sbjct: 201 DRHLVSAEVPKGVKIDVLITE 221
>sp|Q8WZS6|YSH1_NEUCR Endoribonuclease ysh-1 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=ysh-1
PE=3 SV=1
Length = 850
Score = 122 bits (307), Expect = 1e-27, Method: Composition-based stats.
Identities = 68/202 (33%), Positives = 115/202 (56%), Gaps = 13/202 (6%)
Query: 6 LVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFN-NAIDCIV 64
L LG G EVG+SC ++ GK +M D G H AY+ P F DF+ + +D ++
Sbjct: 27 LNLGGGNEVGRSCHIIQYKGKTVMLDAGQHPAYDGLAALPFFD------DFDLSTVDVLL 80
Query: 65 ITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKV---LVDRRGEVEQFT 121
I+HFH+DH +LP+ + G ++MT+ T+A+ +++D +V + + +
Sbjct: 81 ISHFHIDHAASLPYVLAKTNFRGRVFMTHATKAIYKWLIQDSVRVGNTSSNPQSSLVYTE 140
Query: 122 SDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMT 181
DH+ + + A+D T + ++I Y AGHVLGAAMF ++ + +TGDY+
Sbjct: 141 EDHL-KTFPMIEAIDYNTTHTISS-IRITPYPAGHVLGAAMFLIEIAGLKIFFTGDYSRE 198
Query: 182 PDRHLGAARIDR-LQLDLLITE 202
DRHL +A++ + +++D+LITE
Sbjct: 199 EDRHLISAKVPKGVKIDVLITE 220
>sp|Q5BEP0|YSH1_EMENI Endoribonuclease ysh1 OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=ysh1 PE=3 SV=1
Length = 884
Score = 120 bits (301), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 111/201 (55%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A P F S +D ++I+H
Sbjct: 29 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLST-----VDILLISH 83
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS----- 122
FH+DH ALP+ + G ++MT+ T+A+ +++D +V + +Q T+
Sbjct: 84 FHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-NNTASSSDQRTTLYTEH 142
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + +D T ++ ++I Y AGHVLGAAMF + +++TGDY+
Sbjct: 143 DHLS-TLPLIETIDFNTTHTINS-IRITPYPAGHVLGAAMFLISIAGLNILFTGDYSREE 200
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL A + R +++D+LITE
Sbjct: 201 DRHLIPATVPRGVKIDVLITE 221
>sp|Q4WRC2|YSH1_ASPFU Endoribonuclease ysh1 OS=Neosartorya fumigata (strain ATCC MYA-4609
/ Af293 / CBS 101355 / FGSC A1100) GN=ysh1 PE=3 SV=1
Length = 872
Score = 120 bits (301), Expect = 7e-27, Method: Composition-based stats.
Identities = 68/201 (33%), Positives = 111/201 (55%), Gaps = 14/201 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG G EVG+SC ++ GK +M D GMH A P F S +D ++I+H
Sbjct: 30 LGGGNEVGRSCHIIQYKGKTVMLDAGMHPAKEGFSALPFFDEFDLS-----TVDILLISH 84
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS----- 122
FH+DH ALP+ + G ++MT+ T+A+ +++D +V + +Q T+
Sbjct: 85 FHVDHSSALPYVLSKTNFKGRVFMTHATKAIYKWLIQDNVRV-SNTASSSDQRTTLYTEH 143
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
DH++ + + +D T V+ ++I + AGHVLGAAMF + +++TGDY+
Sbjct: 144 DHLS-TLPLIETIDFNTTHTVNS-IRITPFPAGHVLGAAMFLISIAGLNILFTGDYSREE 201
Query: 183 DRHLGAARIDR-LQLDLLITE 202
DRHL A + + +++D+LITE
Sbjct: 202 DRHLIPAEVPKGIKIDVLITE 222
>sp|Q58633|Y1236_METJA Uncharacterized protein MJ1236 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ1236 PE=4 SV=1
Length = 634
Score = 118 bits (295), Expect = 3e-26, Method: Composition-based stats.
Identities = 66/197 (33%), Positives = 107/197 (54%), Gaps = 8/197 (4%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
LG +EVG+SC+ V R++ DCG+++A D + +P F S + +D +++TH
Sbjct: 185 LGGAREVGRSCLYVQTPDTRVLIDCGINVACED-KAFPHFDAPEFSIE---DLDAVIVTH 240
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HLDH G +P GY+GP+Y T PTR L ++ +DY ++ + G+ +TS I
Sbjct: 241 AHLDHCGFIPGLFRY-GYDGPVYCTRPTRDLMTLLQKDYLEI-AKKEGKEVPYTSKDIKT 298
Query: 128 CMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA--MVYTGDYNMTPDRH 185
C+K I +D T + +++ + AGHVLG+A+ + +G+ + YTGD R
Sbjct: 299 CVKHTIPIDYGVTTDISPTIKLTLHNAGHVLGSAIAHLHIGEGLYNLAYTGDIKFETSRL 358
Query: 186 LGAARIDRLQLDLLITE 202
L A +L+ LI E
Sbjct: 359 LEPAVCQFPRLETLIIE 375
>sp|Q57626|Y162_METJA Uncharacterized protein MJ0162 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0162 PE=3 SV=1
Length = 421
Score = 98.2 bits (243), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 9 GAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHF 68
G Q++G SCV V R++ DCGM PD I K D A+D ++++H
Sbjct: 8 GGCQQIGMSCVEVETQKGRVLLDCGMS---------PDTGEIPKVDD--KAVDAVIVSHA 56
Query: 69 HLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAEC 128
HLDH GA+PF+ IY T+PT A +M +R D + + + I
Sbjct: 57 HLDHCGAIPFYK-----FKKIYCTHPT---ADLMFITWR----DTLNLTKAYKEEDIQHA 104
Query: 129 MKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA 188
M+ + ++ + Q+ ++++ + Y AGH+LG+A Y +V ++YTGD N R L
Sbjct: 105 MENIECLNYYEERQITENIKFKFYNAGHILGSASIYLEVDGKKILYTGDINEGVSRTLLP 164
Query: 189 ARIDRLQLDLLITE 202
A D ++D+LI E
Sbjct: 165 ADTDIDEIDVLIIE 178
>sp|Q5SLP1|RNSE_THET8 Ribonuclease TTHA0252 OS=Thermus thermophilus (strain HB8 / ATCC
27634 / DSM 579) GN=TTHA0252 PE=1 SV=1
Length = 431
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 86/171 (50%), Gaps = 15/171 (8%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
GA +EV S ++ G+R++ DCGM + R + F K +D +++TH
Sbjct: 6 FGAAREVTGSAHLLLAGGRRVLLDCGMFQGKEEARNHAPFGFDPKE------VDAVLLTH 59
Query: 68 FHLDHIGALP-FFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA 126
HLDH+G LP F E GY GP+Y T T L I+LED KV+ + F + +
Sbjct: 60 AHLDHVGRLPKLFRE--GYRGPVYATRATVLLMEIVLEDALKVMDE-----PFFGPEDVE 112
Query: 127 ECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGD 177
E + + ++ + +++ L + AGH+ G+A A+ +VY+GD
Sbjct: 113 EALGHLRPLEYGEWLRLGA-LSLAFGQAGHLPGSAFVVAQGEGRTLVYSGD 162
>sp|Q9V3D6|CPSF2_DROME Probable cleavage and polyadenylation specificity factor subunit 2
OS=Drosophila melanogaster GN=Cpsf100 PE=1 SV=1
Length = 756
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 94/190 (49%), Gaps = 13/190 (6%)
Query: 18 CVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALP 77
C ++ I+ RI+ DCG + D + I + + +D ++++H H+GALP
Sbjct: 20 CYILQIDDVRILLDCGWDEKF-------DANFIKELKRQVHTLDAVLLSHPDAYHLGALP 72
Query: 78 FFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDL 137
+ G N PIY T P + + + D + G+ + F+ D + +K+ +
Sbjct: 73 YLVGKLGLNCPIYATIPVFKMGQMFMYDLYMSHFN-MGDFDLFSLDDVDTAFEKITQLKY 131
Query: 138 KQTVQV-DK--DLQIRAYYAGHVLGAAMFY-AKVGDSAMVYTGDYNMTPDRHLGAARIDR 193
QTV + DK + I AGH++G ++ KVG+ +VY D+N +RHL +DR
Sbjct: 132 NQTVSLKDKGYGISITPLNAGHMIGGTIWKIVKVGEEDIVYATDFNHKKERHLSGCELDR 191
Query: 194 LQL-DLLITE 202
LQ LLIT+
Sbjct: 192 LQRPSLLITD 201
>sp|O17403|CPSF2_CAEEL Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis elegans GN=cpsf-2 PE=3 SV=1
Length = 843
Score = 77.0 bits (188), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 92/205 (44%), Gaps = 16/205 (7%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I V ++ G C ++ ++G I+ DCG + QY F + F I
Sbjct: 5 IKLKVFSGAKDEGPLCYLLQVDGDYILLDCGWDERFG--LQY--FEELKP---FIPKISA 57
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLED--YRKVLVDRRGEVEQF 120
++I+H H+G LP+ CG P+Y T P + + + D Y + V+ E E +
Sbjct: 58 VLISHPDPLHLGGLPYLVSKCGLTAPVYATVPVYKMGQMFIYDMVYSHLDVE---EFEHY 114
Query: 121 TSDHIAECMKKVIAVDLKQTV--QVDKDLQIRAYYAGHVLGAAMFY-AKVGDSAMVYTGD 177
T D + +KV V QTV + D + A AGH+LG +++ +V +VY D
Sbjct: 115 TLDDVDTAFEKVEQVKYNQTVVLKGDSGVHFTALPAGHMLGGSIWRICRVTGEDIVYCVD 174
Query: 178 YNMTPDRHLGAARIDRLQLD-LLIT 201
+N +RHL D LLIT
Sbjct: 175 FNHKKERHLNGCSFDNFNRPHLLIT 199
>sp|Q55BS1|CPSF2_DICDI Cleavage and polyadenylation specificity factor subunit 2
OS=Dictyostelium discoideum GN=cpsf2 PE=3 SV=1
Length = 784
Score = 76.6 bits (187), Expect = 1e-13, Method: Composition-based stats.
Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 15/202 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITH 67
L ++ C ++ I+ I+ DCG+ +YN DFS + ID ++++H
Sbjct: 10 LSGAKDESPPCYLLEIDDFCILLDCGL--SYN-----LDFSLLEPLEKVAKKIDAVLLSH 62
Query: 68 FHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAE 127
HIG LP+ G G IY T P + + L D + + + E +Q++ D+I
Sbjct: 63 SDTTHIGGLPYVVGKYGLTGTIYGTTPVLKMGTMFLYDLYENKMSQE-EFQQYSLDNIDS 121
Query: 128 CM--KKVIAVDLKQTVQVD---KDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTP 182
C + + Q + K + I Y AGH +GA+++ G ++VY DYN
Sbjct: 122 CFGEDRFKELSFSQHYSLSGKGKGISITPYLAGHTIGASVWKITKGTYSIVYAIDYNHRN 181
Query: 183 DRHLGAARI--DRLQLDLLITE 202
+ HL + ++ D L+ LLIT+
Sbjct: 182 EGHLDSLQLTSDILKPSLLITD 203
>sp|A8XUS3|CPSF2_CAEBR Probable cleavage and polyadenylation specificity factor subunit 2
OS=Caenorhabditis briggsae GN=cpsf-2 PE=3 SV=2
Length = 842
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 92/205 (44%), Gaps = 16/205 (7%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I V ++ G C ++ ++ I+ DCG +++ + F + + I
Sbjct: 5 IKLKVFSGAKDEGPLCYLLQVDNDYILLDCG----WDERFELKYFEELRP---YIPKISA 57
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLED--YRKVLVDRRGEVEQF 120
++I+H H+G LP+ CG P+Y T P + + + D Y + V+ E + +
Sbjct: 58 VLISHPDPLHLGGLPYLVAKCGLTAPVYCTVPVYKMGQMFIYDLVYSHLDVE---EFQHY 114
Query: 121 TSDHIAECMKKVIAVDLKQTV--QVDKDLQIRAYYAGHVLGAAMFY-AKVGDSAMVYTGD 177
+ D + +KV V QTV + D + A AGH++G +M+ ++ ++Y D
Sbjct: 115 SLDDVDMAFEKVEQVKYNQTVVLKGDSGVNFTAMPAGHMIGGSMWRICRITGEDIIYCVD 174
Query: 178 YNMTPDRHLGAARIDRLQLD-LLIT 201
+N DRHL D LLIT
Sbjct: 175 FNHRKDRHLSGCSFDNFNRPHLLIT 199
>sp|Q9LKF9|CPSF2_ARATH Cleavage and polyadenylation specificity factor subunit 2
OS=Arabidopsis thaliana GN=CPSF100 PE=1 SV=2
Length = 739
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 84/174 (48%), Gaps = 13/174 (7%)
Query: 20 VVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFF 79
+V+I+G + DCG + ++ P SR++ + ID ++++H HIGALP+
Sbjct: 22 LVSIDGFNFLIDCGWNDLFDTSLLEP-LSRVAST------IDAVLLSHPDTLHIGALPYA 74
Query: 80 TEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRR-GEVEQFTSDHIAECMKKVIAVDLK 138
+ G + P+Y T P L +L Y + L ++ + + FT D I + VI +
Sbjct: 75 MKQLGLSAPVYATEPVHRLG--LLTMYDQFLSRKQVSDFDLFTLDDIDSAFQNVIRLTYS 132
Query: 139 QTVQVD---KDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAA 189
Q + + + I + AGH+LG +++ ++Y DYN +RHL
Sbjct: 133 QNYHLSGKGEGIVIAPHVAGHMLGGSIWRITKDGEDVIYAVDYNHRKERHLNGT 186
>sp|Q60355|Y047_METJA Uncharacterized protein MJ0047 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0047 PE=3 SV=2
Length = 428
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 95/203 (46%), Gaps = 14/203 (6%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
++ + GA EVG+SC+ + + +I+ DCG+ + +YP + +D
Sbjct: 1 MEIIFRGAALEVGRSCIEIKTDKSKILLDCGVKLG--KEIEYPILDNSIRD------VDK 52
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTS 122
+ I+H HLDH GALP + P+ T ++ L ++L+D K+ ++ + +
Sbjct: 53 VFISHAHLDHSGALPVLFH-RKMDVPVITTELSKKLIKVLLKDMVKIAETENKKI-PYNN 110
Query: 123 DHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLG-AAMFYAKVGDSAMVYTGDYNMT 181
+ E ++ I ++ + KD + AGH+ G A++ + ++YTGD +
Sbjct: 111 HDVKEAIRHTIPLNYNDK-KYYKDFSYELFSAGHIPGSASILLNYQNNKTILYTGDVKLR 169
Query: 182 PDRHLGAARIDRLQ--LDLLITE 202
R A + + +D+LI E
Sbjct: 170 DTRLTKGADLSYTKDDIDILIIE 192
>sp|Q652P4|CPSF2_ORYSJ Cleavage and polyadenylation specificity factor subunit 2 OS=Oryza
sativa subsp. japonica GN=Os09g0569400 PE=2 SV=1
Length = 738
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 90/194 (46%), Gaps = 16/194 (8%)
Query: 15 GKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIG 74
G C ++ ++G R + DCG + D D S + ID ++++H H+G
Sbjct: 17 GPLCYLLAVDGFRFLLDCG----WTD---LCDPSHLQPLAKVAPTIDAVLLSHADTMHLG 69
Query: 75 ALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRR--GEVEQFTSDHIAECMKKV 132
ALP+ + G + P+Y T P L + L DY + RR + + FT D I + V
Sbjct: 70 ALPYAMKHLGLSAPVYATEPVFRLGILTLYDY---FISRRQVSDFDLFTLDDIDAAFQNV 126
Query: 133 IAVDLKQTVQVD---KDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL-GA 188
+ + Q ++ + + I + AGH LG ++ +VY D+N +RHL G
Sbjct: 127 VRLKYSQNHLLNDKGEGIVIAPHVAGHDLGGTVWKITKDGEDVVYAVDFNHRKERHLNGT 186
Query: 189 ARIDRLQLDLLITE 202
A ++ +LIT+
Sbjct: 187 ALGSFVRPAVLITD 200
>sp|O35218|CPSF2_MOUSE Cleavage and polyadenylation specificity factor subunit 2 OS=Mus
musculus GN=Cpsf2 PE=1 SV=1
Length = 782
Score = 64.7 bits (156), Expect = 4e-10, Method: Composition-based stats.
Identities = 55/208 (26%), Positives = 89/208 (42%), Gaps = 19/208 (9%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I L QE C ++ ++ R + DCG +++H + K + ID
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCG----WDEHFSVDIIDSLRKHV---HQIDA 57
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--- 119
++++H H+GALPF G N IY T P + + + D L R E
Sbjct: 58 VLLSHPDPLHLGALPFAVGKLGLNCAIYATIPVYKMGQMFMYD----LYQSRHNTEDFTL 113
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVD---KDLQIRAYYAGHVLGAAMF-YAKVGDSAMVYT 175
FT D + K+ + Q V + L I AGH++G ++ K G+ +VY
Sbjct: 114 FTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYA 173
Query: 176 GDYNMTPDRHLGAARIDRL-QLDLLITE 202
D+N + HL ++ L + LLIT+
Sbjct: 174 VDFNHKREIHLNGCSLEMLSRPSLLITD 201
>sp|Q10568|CPSF2_BOVIN Cleavage and polyadenylation specificity factor subunit 2 OS=Bos
taurus GN=CPSF2 PE=1 SV=1
Length = 782
Score = 63.5 bits (153), Expect = 9e-10, Method: Composition-based stats.
Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 19/208 (9%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I L QE C ++ ++ R + DCG +++H + K + ID
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCG----WDEHFSMDIIDSLRKHV---HQIDA 57
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--- 119
++++H H+GALP+ G N IY T P + + + D L R E
Sbjct: 58 VLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYD----LYQSRHNTEDFTL 113
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVD---KDLQIRAYYAGHVLGAAMF-YAKVGDSAMVYT 175
FT D + K+ + Q V + L I AGH++G ++ K G+ +VY
Sbjct: 114 FTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYA 173
Query: 176 GDYNMTPDRHLGAARIDRL-QLDLLITE 202
D+N + HL ++ L + LLIT+
Sbjct: 174 VDFNHKREIHLNGCSLEMLSRPSLLITD 201
>sp|Q9P2I0|CPSF2_HUMAN Cleavage and polyadenylation specificity factor subunit 2 OS=Homo
sapiens GN=CPSF2 PE=1 SV=2
Length = 782
Score = 63.5 bits (153), Expect = 1e-09, Method: Composition-based stats.
Identities = 54/208 (25%), Positives = 89/208 (42%), Gaps = 19/208 (9%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I L QE C ++ ++ R + DCG +++H + K + ID
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCG----WDEHFSMDIIDSLRKHV---HQIDA 57
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--- 119
++++H H+GALP+ G N IY T P + + + D L R E
Sbjct: 58 VLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYD----LYQSRHNTEDFTL 113
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVD---KDLQIRAYYAGHVLGAAMF-YAKVGDSAMVYT 175
FT D + K+ + Q V + L I AGH++G ++ K G+ +VY
Sbjct: 114 FTLDDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYA 173
Query: 176 GDYNMTPDRHLGAARIDRL-QLDLLITE 202
D+N + HL ++ L + LLIT+
Sbjct: 174 VDFNHKREIHLNGCSLEMLSRPSLLITD 201
>sp|Q9W799|CPSF2_XENLA Cleavage and polyadenylation specificity factor subunit 2
OS=Xenopus laevis GN=cpsf2 PE=1 SV=1
Length = 783
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 87/208 (41%), Gaps = 19/208 (9%)
Query: 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDC 62
I L QE C ++ ++ R + DCG ++ I + + +D
Sbjct: 5 IKLTTLVGAQEESAVCYLLQVDEFRFLLDCGWDENFS-------MDIIDSVKKYVHQVDA 57
Query: 63 IVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ--- 119
++++H H+GALP+ G N IY T P + + + D L R E
Sbjct: 58 VLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYD----LYQSRHNTEDFSL 113
Query: 120 FTSDHIAECMKKVIAVDLKQTVQVDKD---LQIRAYYAGHVLGAAMFY-AKVGDSAMVYT 175
F+ D + K+ + Q V + L I AGH++G ++ K G+ +VY
Sbjct: 114 FSLDDVDCAFDKIQQLKYNQIVHLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYA 173
Query: 176 GDYNMTPDRHLGAARIDRL-QLDLLITE 202
D+N + HL ++ + + LLIT+
Sbjct: 174 VDFNHKREIHLNGCSLEMINRPSLLITD 201
>sp|P54122|RNJ_CORGL Ribonuclease J OS=Corynebacterium glutamicum (strain ATCC 13032 /
DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
GN=Cgl1970 PE=3 SV=2
Length = 718
Score = 47.4 bits (111), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQ----YPDFSRISKSCDFNNAIDCI 63
LG E+G++ V N + ++ DCG+ + PDF I D + +D +
Sbjct: 160 LGGISEIGRNMTVFEYNNRLLIVDCGVLFPSSGEPGVDLILPDFGPIE---DHLHRVDAL 216
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRK 108
V+TH H DHIGA+P+ ++ + PI + T AL +++R+
Sbjct: 217 VVTHGHEDHIGAIPWLLKLRN-DIPILASRFTLALIAAKCKEHRQ 260
>sp|A7SBF0|INT9_NEMVE Integrator complex subunit 9 homolog OS=Nematostella vectensis
GN=ints9 PE=3 SV=1
Length = 660
Score = 47.0 bits (110), Expect = 9e-05, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 31/135 (22%)
Query: 55 DFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPT----RALAPIMLEDYRKVL 110
DF+ +D I+I+++H H+ ALPF TE G+NG IY T PT R L ++ +V
Sbjct: 96 DFS-MVDVILISNYH--HMLALPFITEYSGFNGKIYATEPTIQIGRDLMLELVTFAERVP 152
Query: 111 VDRRGEVEQ------------------------FTSDHIAECMKKVIAVDLKQTVQVDKD 146
R G + + ++ + C+ K+ AV + + +
Sbjct: 153 KRRNGNMWKNDNVIRCLPAPLNELANVKSWRVLYSKHDVKACISKIQAVSYSEKLDLCGI 212
Query: 147 LQIRAYYAGHVLGAA 161
LQ+ A+ +G LG++
Sbjct: 213 LQLSAHSSGFCLGSS 227
>sp|O74740|CFT2_SCHPO Cleavage factor two protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cft2 PE=1 SV=1
Length = 797
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 61 DCIVITHFHLDHIGALPF-FTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQ 119
D I+++H L HIG L + + + N IY T PT + + + D K +
Sbjct: 45 DLILLSHSDLAHIGGLVYAYYKYDWKNAYIYATLPTINMGRMTMLDAIK-----SNYISD 99
Query: 120 FTSDHIAECMKKVIAVDLKQ-TVQVDK--DLQIRAYYAGHVLGAAMFYAKVGDSAMVYTG 176
+ + +I + +Q T+ + K L I AY AGH LG ++ +++Y
Sbjct: 100 MSKADVDAVFDSIIPLRYQQPTLLLGKCSGLTITAYNAGHTLGGTLWSLIKESESVLYAV 159
Query: 177 DYNMTPDRHLGAARI 191
D+N + D+HL A +
Sbjct: 160 DWNHSKDKHLNGAAL 174
>sp|Q58271|RNJ_METJA Ribonuclease J OS=Methanocaldococcus jannaschii (strain ATCC 43067
/ DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0861
PE=3 SV=1
Length = 448
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 22/133 (16%)
Query: 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSR------ISKSC 54
M ++ + +G +EVG++ V ++G+ I+ D G+ + + D S+ I K
Sbjct: 1 MKLEIIAIGGYEEVGRNMTAVNVDGEIIILDMGIRLDRVLIHEDTDISKLHSLELIEKGI 60
Query: 55 DFNNAI--------DCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDY 106
N+ + IV++H HLDHIGA+P YN PI T T L
Sbjct: 61 IPNDTVMKNIEGEVKAIVLSHGHLDHIGAVPKLAH--RYNAPIIGTPYTIELV------K 112
Query: 107 RKVLVDRRGEVEQ 119
R++L +++ +V
Sbjct: 113 REILSEKKFDVRN 125
>sp|P60193|RNZN_WHEAT Nuclear ribonuclease Z (Fragment) OS=Triticum aestivum GN=ELAC PE=1
SV=1
Length = 176
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 65/141 (46%), Gaps = 21/141 (14%)
Query: 59 AIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVE 118
A D + I+H HLDHIG LP + G +Y P P L + + L D ++
Sbjct: 46 AQDFLFISHAHLDHIGGLPMYVATRG----LYRLRPPTIFVPKYLRELVERLFDVHRAMD 101
Query: 119 QFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDY 178
Q +H ++ +D+ + ++ +DL++RA+ H + + + ++Y+
Sbjct: 102 QSELNHT------LVPLDIGEEYELRRDLKVRAFKTYHTIPSQGY--------VIYSVKQ 147
Query: 179 NMTPDRHLG--AARIDRLQLD 197
+ D +LG + I RL+L
Sbjct: 148 KLKQD-YLGLPGSEIKRLKLS 167
>sp|O33294|Y2752_MYCTU Putative ribonuclease J Rv2752c OS=Mycobacterium tuberculosis
GN=Rv2752c PE=1 SV=1
Length = 558
Score = 45.4 bits (106), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 56/125 (44%), Gaps = 8/125 (6%)
Query: 8 LGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQ----YPDFSRISKSCDFNNAIDCI 63
LG E+G++ V G+ ++ DCG+ +D PD + D I+ +
Sbjct: 21 LGGINEIGRNMTVFEHLGRLLIIDCGVLFPGHDEPGVDLILPDMRHVEDRLD---DIEAL 77
Query: 64 VITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSD 123
V+TH H DHIGA+PF ++ + P+ + T AL +YR V Q T
Sbjct: 78 VLTHGHEDHIGAIPFLLKLR-PDIPVVGSKFTLALVAEKCREYRITPVFVEVREGQSTRH 136
Query: 124 HIAEC 128
+ EC
Sbjct: 137 GVFEC 141
>sp|Q29RY4|RNZ1_BOVIN Zinc phosphodiesterase ELAC protein 1 OS=Bos taurus GN=ELAC1 PE=2
SV=1
Length = 363
Score = 43.9 bits (102), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 60/153 (39%), Gaps = 18/153 (11%)
Query: 1 MAIDCLVLGAGQEV-----GKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCD 55
M++D LG G G S +V+ G+ +FDCG + RI+K
Sbjct: 1 MSMDVTFLGTGAAYPSPTRGASALVLRCEGECWLFDCGEGTQTQLMKSQLKAGRITK--- 57
Query: 56 FNNAIDCIVITHFHLDHIGALP-FFTEICGYNGPIYMTYPTRALAPIMLED--YRKVLVD 112
I ITH H DH LP I +G + P P+ L D +R + +
Sbjct: 58 -------IFITHLHGDHFFGLPGLLCTISLQSGSMVTKQPIEIYGPVGLRDFIWRTMELS 110
Query: 113 RRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDK 145
V + + + +L+++VQVDK
Sbjct: 111 HTELVFPYVVHELVPTADQCPTEELQESVQVDK 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.327 0.141 0.434
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,620,698
Number of Sequences: 539616
Number of extensions: 3002107
Number of successful extensions: 8883
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 8696
Number of HSP's gapped (non-prelim): 168
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)