Query 039453
Match_columns 202
No_of_seqs 105 out of 1723
Neff 10.3
Searched_HMMs 46136
Date Fri Mar 29 09:47:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039453.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039453hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1136 Predicted cleavage and 100.0 1E-35 2.3E-40 222.7 18.3 202 1-202 2-203 (501)
2 TIGR03675 arCOG00543 arCOG0054 100.0 3.9E-29 8.4E-34 208.6 22.0 195 3-202 175-371 (630)
3 COG1782 Predicted metal-depend 100.0 4E-28 8.7E-33 190.4 17.4 195 3-202 181-377 (637)
4 COG1236 YSH1 Predicted exonucl 100.0 9.5E-27 2.1E-31 187.2 20.1 187 3-202 1-187 (427)
5 KOG1137 mRNA cleavage and poly 99.9 5.7E-26 1.2E-30 179.7 10.9 193 3-202 14-206 (668)
6 TIGR00649 MG423 conserved hypo 99.9 1.2E-24 2.6E-29 176.1 17.4 178 3-202 1-190 (422)
7 TIGR02651 RNase_Z ribonuclease 99.9 1.2E-23 2.7E-28 163.4 10.4 167 4-202 1-228 (299)
8 PRK11244 phnP carbon-phosphoru 99.9 6.1E-23 1.3E-27 155.5 11.8 161 3-202 1-185 (250)
9 KOG1135 mRNA cleavage and poly 99.9 6.3E-22 1.4E-26 160.3 18.1 182 13-202 12-197 (764)
10 COG0595 mRNA degradation ribon 99.9 1.5E-22 3.2E-27 165.5 14.5 180 1-202 7-198 (555)
11 TIGR02649 true_RNase_BN ribonu 99.9 7.6E-23 1.7E-27 159.0 10.5 166 5-202 1-230 (303)
12 PRK02113 putative hydrolase; P 99.9 6.1E-21 1.3E-25 144.8 12.8 167 3-202 1-190 (252)
13 PRK05184 pyrroloquinoline quin 99.9 4.9E-21 1.1E-25 148.3 11.9 169 3-202 1-219 (302)
14 PRK00055 ribonuclease Z; Revie 99.9 1.1E-21 2.4E-26 150.2 7.2 179 2-202 1-194 (270)
15 PRK00685 metal-dependent hydro 99.8 2.8E-20 6E-25 139.2 13.1 151 3-201 1-163 (228)
16 TIGR03307 PhnP phosphonate met 99.8 1.8E-20 3.9E-25 141.1 11.2 149 15-202 26-175 (238)
17 TIGR02108 PQQ_syn_pqqB coenzym 99.8 4.1E-20 9E-25 142.7 12.2 157 16-202 38-219 (302)
18 smart00849 Lactamase_B Metallo 99.8 2.3E-20 5E-25 134.6 8.5 145 14-184 4-149 (183)
19 PLN02469 hydroxyacylglutathion 99.8 9.2E-19 2E-23 132.5 11.3 134 4-183 2-141 (258)
20 PRK02126 ribonuclease Z; Provi 99.8 1.6E-18 3.5E-23 135.6 10.4 136 15-167 15-173 (334)
21 PLN02398 hydroxyacylglutathion 99.8 5.2E-18 1.1E-22 131.6 11.9 122 17-183 88-212 (329)
22 COG1234 ElaC Metal-dependent h 99.8 3E-18 6.5E-23 131.9 9.5 89 2-100 1-99 (292)
23 PRK11921 metallo-beta-lactamas 99.8 2.6E-18 5.6E-23 138.0 9.6 133 14-180 31-165 (394)
24 PRK04286 hypothetical protein; 99.8 7E-18 1.5E-22 130.5 11.6 189 3-202 1-209 (298)
25 PLN02962 hydroxyacylglutathion 99.8 8E-18 1.7E-22 126.6 10.0 126 15-183 22-156 (251)
26 PF12706 Lactamase_B_2: Beta-l 99.7 1.3E-17 2.8E-22 121.6 10.2 147 27-202 2-154 (194)
27 TIGR03413 GSH_gloB hydroxyacyl 99.7 7.9E-18 1.7E-22 127.2 9.1 120 17-183 11-132 (248)
28 PF00753 Lactamase_B: Metallo- 99.7 2.4E-17 5.2E-22 119.2 10.3 150 15-188 5-156 (194)
29 PRK11709 putative L-ascorbate 99.7 1.2E-16 2.6E-21 125.7 13.9 167 2-201 37-248 (355)
30 PRK05452 anaerobic nitric oxid 99.7 3.6E-17 7.9E-22 133.8 9.0 134 14-179 33-168 (479)
31 TIGR00361 ComEC_Rec2 DNA inter 99.7 1.5E-16 3.2E-21 135.3 12.0 160 3-201 440-605 (662)
32 PRK11539 ComEC family competen 99.7 1E-16 2.2E-21 137.9 10.9 157 3-201 501-663 (755)
33 COG2333 ComEC Predicted hydrol 99.7 2.4E-16 5.3E-21 120.1 11.1 163 4-201 45-213 (293)
34 PRK10241 hydroxyacylglutathion 99.7 1.6E-16 3.4E-21 120.3 9.8 119 17-183 13-133 (251)
35 COG0491 GloB Zn-dependent hydr 99.7 3.5E-16 7.6E-21 118.0 10.6 159 4-183 13-173 (252)
36 KOG0813 Glyoxylase [General fu 99.6 6.8E-16 1.5E-20 114.7 8.6 131 16-183 13-145 (265)
37 PF13483 Lactamase_B_3: Beta-l 99.6 8.4E-15 1.8E-19 104.1 8.6 127 4-201 1-134 (163)
38 COG0426 FpaA Uncharacterized f 99.6 1.5E-14 3.1E-19 113.1 9.2 136 12-181 32-169 (388)
39 COG1237 Metal-dependent hydrol 99.5 5.1E-14 1.1E-18 103.7 9.7 75 16-97 22-96 (259)
40 COG2220 Predicted Zn-dependent 99.5 4.3E-13 9.2E-18 102.2 13.3 143 2-180 6-162 (258)
41 KOG2121 Predicted metal-depend 99.5 1.5E-15 3.2E-20 125.0 -0.3 185 3-202 443-647 (746)
42 KOG1138 Predicted cleavage and 99.5 1.2E-12 2.6E-17 103.8 14.9 184 16-201 12-264 (653)
43 COG2248 Predicted hydrolase (m 99.5 7.3E-13 1.6E-17 96.7 10.3 170 17-202 16-208 (304)
44 TIGR02650 RNase_Z_T_toga ribon 99.4 1E-12 2.2E-17 99.1 9.6 149 18-202 11-207 (277)
45 COG1235 PhnP Metal-dependent h 99.2 2.4E-11 5.1E-16 93.1 7.5 38 58-97 61-98 (269)
46 KOG0814 Glyoxylase [General fu 99.2 6.1E-11 1.3E-15 82.2 5.5 120 16-180 21-143 (237)
47 PF02112 PDEase_II: cAMP phosp 99.0 4.2E-09 9.2E-14 82.1 9.1 174 3-184 1-222 (335)
48 PF14597 Lactamase_B_5: Metall 98.8 2.9E-09 6.3E-14 74.5 3.4 124 12-183 19-142 (199)
49 KOG1361 Predicted hydrolase in 98.8 1.7E-08 3.6E-13 81.3 6.6 118 58-202 111-229 (481)
50 KOG4736 Uncharacterized conser 98.4 1.3E-06 2.8E-11 65.9 6.5 123 16-186 95-219 (302)
51 COG5212 PDE1 Low-affinity cAMP 98.1 8.7E-06 1.9E-10 60.9 6.7 117 58-184 111-238 (356)
52 KOG3798 Predicted Zn-dependent 98.1 8.7E-06 1.9E-10 60.3 5.6 152 16-193 88-255 (343)
53 PF13691 Lactamase_B_4: tRNase 97.7 0.00011 2.3E-09 43.0 4.5 49 17-75 13-63 (63)
54 COG2015 Alkyl sulfatase and re 97.4 6.1E-05 1.3E-09 60.8 1.4 73 17-94 127-202 (655)
55 KOG3592 Microtubule-associated 95.1 0.015 3.2E-07 49.6 2.3 65 5-82 40-104 (934)
56 KOG1137 mRNA cleavage and poly 94.7 0.24 5.3E-06 41.3 8.2 104 3-111 151-263 (668)
57 PF00797 Acetyltransf_2: N-ace 38.6 36 0.00077 25.5 2.9 21 17-37 89-109 (240)
58 PF06415 iPGM_N: BPG-independe 34.8 23 0.0005 26.5 1.3 24 67-92 42-66 (223)
59 COG2052 Uncharacterized protei 33.1 82 0.0018 19.1 3.2 17 1-17 1-17 (89)
60 KOG2121 Predicted metal-depend 30.0 12 0.00026 32.8 -0.9 49 22-80 70-118 (746)
61 PF14234 DUF4336: Domain of un 27.4 72 0.0016 24.9 2.9 74 15-96 19-93 (285)
62 cd02986 DLP Dim1 family, Dim1- 26.5 91 0.002 20.7 2.9 21 16-36 69-89 (114)
63 PRK15047 N-hydroxyarylamine O- 23.8 94 0.002 24.2 3.0 22 16-37 107-128 (281)
64 PF07940 Hepar_II_III: Heparin 22.8 1.1E+02 0.0024 20.3 3.0 22 15-36 30-51 (139)
No 1
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=100.00 E-value=1e-35 Score=222.69 Aligned_cols=202 Identities=69% Similarity=1.227 Sum_probs=194.2
Q ss_pred CceeEEEecCccccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhh
Q 039453 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFT 80 (202)
Q Consensus 1 m~~~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~ 80 (202)
|.|+++.||.||.+|.+|+++..++++||+|||.-+.+.+.+++|+++++...+...+-||.|+|||.|.||||++|.+.
T Consensus 2 p~i~v~pLGAGQdvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfs 81 (501)
T KOG1136|consen 2 PEIKVTPLGAGQDVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFS 81 (501)
T ss_pred CcceEEeccCCcccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchH
Confidence 57899999999999999999999999999999999999999999999999999888788999999999999999999999
Q ss_pred hhcCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCCccce
Q 039453 81 EICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGA 160 (202)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH~~~~ 160 (202)
+-.+.++|+|.+.++..+++-.++++++....+.++...|....+.+....+..+.-.++++++++++++++.+||-.|.
T Consensus 82 Ev~GY~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayYAGHVLGA 161 (501)
T KOG1136|consen 82 EVVGYDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYYAGHVLGA 161 (501)
T ss_pred hhhCCCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeeecccccce
Confidence 99899999999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred EEEEEEECCEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEeC
Q 039453 161 AMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 161 ~~~~i~~~~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~e 202 (202)
.+++++.++.+++|+||.+.+++..+..+.....++|+||.|
T Consensus 162 aMf~ikvGd~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsE 203 (501)
T KOG1136|consen 162 AMFYIKVGDQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISE 203 (501)
T ss_pred eEEEEEecceeEEEecCccCCcccccchhhhccccCceEEee
Confidence 999999999999999999999999998888888899999987
No 2
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.97 E-value=3.9e-29 Score=208.57 Aligned_cols=195 Identities=33% Similarity=0.608 Sum_probs=151.9
Q ss_pred eeEEEecCccccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhh
Q 039453 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEI 82 (202)
Q Consensus 3 ~~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 82 (202)
|++++||+++++|+||++|+.++..+|||||..........+|.+ ........+||+|+|||+|.||+|+++.+.+.
T Consensus 175 m~i~~LGg~~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l---~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~ 251 (630)
T TIGR03675 175 VRVTALGGFREVGRSALLLSTPESRILLDCGVNVGANGDNAYPYL---DVPEFQLDELDAVVITHAHLDHSGLVPLLFKY 251 (630)
T ss_pred EEEEEEecCCccCCCEEEEEECCCEEEEECCCCccccchhhcccc---cccCCCHHHCcEEEECCCCHHHHhhHHHHHHh
Confidence 789999999999999999999999999999987643211111211 11122357899999999999999999999864
Q ss_pred cCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCCccceEE
Q 039453 83 CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM 162 (202)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH~~~~~~ 162 (202)
+++++||++.++..++...+.++..... ..+..+.|...++.........+++++.+.++++++++++++||.+|+++
T Consensus 252 -g~~gpIY~T~pT~~l~~~ll~D~~~i~~-~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~AGHilGsa~ 329 (630)
T TIGR03675 252 -GYDGPVYCTPPTRDLMTLLQLDYIDVAQ-REGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYNAGHILGSAI 329 (630)
T ss_pred -CCCCceeecHHHHHHHHHHHHHHHHHHH-hcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEecCccccCceE
Confidence 4578999999999988777766655433 23445667777777776778899999999997689999999999999999
Q ss_pred EEEEEC--CEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEeC
Q 039453 163 FYAKVG--DSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 163 ~~i~~~--~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~e 202 (202)
+.+... ..+++|+||+.+....++.....+..++|+||+|
T Consensus 330 ~~~~i~dg~~~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~E 371 (630)
T TIGR03675 330 AHLHIGDGLYNIVYTGDFKYEKTRLLDPAVNKFPRVETLIME 371 (630)
T ss_pred EEEEECCCCEEEEEeCCCCCCCCcCccchhhcCCCCCEEEEe
Confidence 888764 3689999999998877655433233469999997
No 3
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.96 E-value=4e-28 Score=190.41 Aligned_cols=195 Identities=33% Similarity=0.601 Sum_probs=163.0
Q ss_pred eeEEEecCccccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhh
Q 039453 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEI 82 (202)
Q Consensus 3 ~~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 82 (202)
+++++||+..++|.+|+++++.+..+|+|||..........+|-+.... .....+|+|+|||+|.||||-+|.|-+
T Consensus 181 vRvt~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE---~~~~~lDAViiTHAHLDH~G~lP~Lfk- 256 (637)
T COG1782 181 VRVTALGGFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPE---FQPDELDAVIITHAHLDHCGFLPLLFK- 256 (637)
T ss_pred EEEEeeccchhccceeEEEecCCceEEEeccccCCCCccccCccccccc---ccccccceEEEeecccccccchhhhhh-
Confidence 6899999999999999999999999999999988765333333332222 222479999999999999999999987
Q ss_pred cCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCCccceEE
Q 039453 83 CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM 162 (202)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH~~~~~~ 162 (202)
++..+|||+++++..++--...+|..... +.+..+.|+...+.+......++++|+...+.++++++++.+||-.|+.+
T Consensus 257 Ygy~GPVY~T~PTRDlm~LLq~Dyi~va~-keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~NAGHILGSA~ 335 (637)
T COG1782 257 YGYDGPVYCTPPTRDLMVLLQLDYIEVAE-KEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYNAGHILGSAM 335 (637)
T ss_pred cCCCCCeeeCCCcHHHHHHHHHHHHHHHH-hcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEecccchhccee
Confidence 46789999999999887777777777654 56677889989999988999999999999999999999999999999887
Q ss_pred EEEEE--CCEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEeC
Q 039453 163 FYAKV--GDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 163 ~~i~~--~~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~e 202 (202)
..+.. +...++|+||..+....++..+.....+++.||+|
T Consensus 336 ~HlHIGdGlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimE 377 (637)
T COG1782 336 AHLHIGDGLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIME 377 (637)
T ss_pred eEEEecCCceeEEEecccccceeeecChhhccCcchhheeee
Confidence 66655 44689999999999999987766666679999886
No 4
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=9.5e-27 Score=187.17 Aligned_cols=187 Identities=33% Similarity=0.627 Sum_probs=157.5
Q ss_pred eeEEEecCccccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhh
Q 039453 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEI 82 (202)
Q Consensus 3 ~~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 82 (202)
|.+.++|++++++++|.+++.++..+|+|||....... ...|... .. .++|+++|||+|.||+|+++.+...
T Consensus 1 ~~~~~~g~~~evg~s~~~l~~~~~~il~D~G~~~~~~~-~~~p~~~------~~-~~vDavllTHaHlDH~g~lp~l~~~ 72 (427)
T COG1236 1 MTLRFLGAAREVGRSCVLLETGGTRILLDCGLFPGDPS-PERPLLP------PF-PKVDAVLLTHAHLDHIGALPYLVRN 72 (427)
T ss_pred CceecccccCCcCcEEEEEEECCceEEEECCCCcCcCC-ccCCCCC------CC-CCcCEEEeccCchhhhcccHHHHHh
Confidence 46789999999999999999999999999999875542 1111111 11 2799999999999999999999885
Q ss_pred cCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCCccceEE
Q 039453 83 CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM 162 (202)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH~~~~~~ 162 (202)
. .+.++|+++++..+++..+.+....... +..+.|...++......+..+..++.+.++ +++++++++||.+|+.+
T Consensus 73 ~-~~~~v~aT~~T~~l~~~~l~d~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~-~~~v~~~~AGHilGsa~ 148 (427)
T COG1236 73 G-FEGPVYATPPTAALLKVLLGDSLKLAEG--PDKPPYSEEDVERVPDLIRPLPYGEPVEVG-GVKVTFYNAGHILGSAA 148 (427)
T ss_pred c-cCCceeeccCHHHHHHHHHHHHHhhhcC--CCCCCCchhHHHhhHhhEEEecCCCceEee-eEEEEEecCCCccceeE
Confidence 4 4689999999999988888777665432 456778888888888899999999999998 69999999999999999
Q ss_pred EEEEECCEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEeC
Q 039453 163 FYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 163 ~~i~~~~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~e 202 (202)
|.++..+.+++|+||.....+.++....++.. +|+||+|
T Consensus 149 ~~le~~~~~ilytGD~~~~~~~l~~~a~~~~~-~DvLI~E 187 (427)
T COG1236 149 ILLEVDGGRILYTGDVKRRKDRLLNGAELPPC-IDVLIVE 187 (427)
T ss_pred EEEEeCCceEEEEeccCCCcCCCCCccccCCC-CcEEEEe
Confidence 99999999999999999999988877766653 7999997
No 5
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=99.93 E-value=5.7e-26 Score=179.65 Aligned_cols=193 Identities=41% Similarity=0.735 Sum_probs=169.3
Q ss_pred eeEEEecCccccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhh
Q 039453 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEI 82 (202)
Q Consensus 3 ~~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 82 (202)
+.++-||.|+++|.+|.+++..|++||+|||.-..+......|-+... .+..+|.+++||.|.||+++++++.++
T Consensus 14 l~~~pLGag~EVGRSC~ile~kGk~iMld~gvhpaysg~aslpf~d~v-----d~s~id~llIthFhldh~aslp~~~qk 88 (668)
T KOG1137|consen 14 LKFTPLGAGNEVGRSCHILEYKGKTIMLDCGVHPAYSGMASLPFYDEV-----DLSAIDPLLITHFHLDHAASLPFTLQK 88 (668)
T ss_pred EEEEECCCCcccCceEEEEEecCeEEEeccccCccccccccccchhhc-----ccccccHHHHhhhhhhhcccccceeee
Confidence 679999999999999999999999999999998777665544444433 348899999999999999999999998
Q ss_pred cCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCCccceEE
Q 039453 83 CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM 162 (202)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH~~~~~~ 162 (202)
..+.+++|.+++|.++++..+.+|.+.. +..++...|...++.+.+.+++.++..+++... |++|+++.+||-.|.++
T Consensus 89 Tsf~grvfmth~TkAi~kwllsdyvrvs-~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~-gIkf~p~~aGhVlgacM 166 (668)
T KOG1137|consen 89 TSFIGRVFMTHPTKAIYKWLLSDYVRVS-NRSGDDRLYTEGDLMESMDKIETIDFHETVEVN-GIKFWPYHAGHVLGACM 166 (668)
T ss_pred ccccceeEEecchHHHHHhhhhcceEee-eccCccccccchhHHHhhhhheeeeeccccccC-CeEEEeeccchhhhhee
Confidence 8788999999999999888888877643 233444677888888888999999999999987 89999999999999999
Q ss_pred EEEEECCEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEeC
Q 039453 163 FYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 163 ~~i~~~~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~e 202 (202)
|.++..+-+++|+||.....+..+..+..|+.++|++|.|
T Consensus 167 f~veiagv~lLyTGd~sreeDrhl~aae~P~~~~dvli~e 206 (668)
T KOG1137|consen 167 FMVEIAGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITE 206 (668)
T ss_pred eeeeeceEEEEeccccchhhcccccchhCCCCCccEEEEE
Confidence 9999999999999999999999999999999999999986
No 6
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.93 E-value=1.2e-24 Score=176.09 Aligned_cols=178 Identities=26% Similarity=0.416 Sum_probs=131.0
Q ss_pred eeEEEecCccccCCceEEEEECCEEEEEEeecccccCCC----CCCCCccccccccCCCCCcCEEEeccCchhhhCChhH
Q 039453 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDH----RQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPF 78 (202)
Q Consensus 3 ~~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~----~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~ 78 (202)
++++++|+.+++|+|||+++.++..+|||||........ ...|++..+.+ ...++++|++||.|.||++|++.
T Consensus 1 ~~i~~lGG~~eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~---~~~~i~~I~iTH~H~DHiggl~~ 77 (422)
T TIGR00649 1 VKIFALGGLGEIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQE---NQDKVKGIFITHGHEDHIGAVPY 77 (422)
T ss_pred CEEEEccCCCccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHh---ccccCCEEEECCCChHHhCcHHH
Confidence 578999999999999999999999999999986532211 11234444432 23689999999999999999999
Q ss_pred hhhhcCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCCc-
Q 039453 79 FTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHV- 157 (202)
Q Consensus 79 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH~- 157 (202)
+.+..+ ..+||+++.+..+++..... . .+.. ......+..++.+++++++++++++.+|+
T Consensus 78 l~~~~~-~~~Vy~~~~t~~~l~~~~~~--------~----~~~~------~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~ 138 (422)
T TIGR00649 78 LFHTVG-FPPIYGTPLTIALIKSKIKE--------N----KLNV------RTDLLEIHEGEPIETGENHTIEFIRITHSI 138 (422)
T ss_pred HHHhCC-CCeEEeCHHHHHHHHHHHHh--------c----CCCC------CCceEEeCCCCEEEeCCceEEEEEECCCCC
Confidence 987542 36899999998766543320 0 0000 12356788899999975699999998884
Q ss_pred cceEEEEEEECCEEEEEEeeCCCCCCCCCC-CC------CCCCCCCCeEEeC
Q 039453 158 LGAAMFYAKVGDSAMVYTGDYNMTPDRHLG-AA------RIDRLQLDLLITE 202 (202)
Q Consensus 158 ~~~~~~~i~~~~~~il~~gD~~~~~~~~~~-~~------~~~~~~~d~li~e 202 (202)
++++++++++++++++|+||+.+....... .. ......+|+||+|
T Consensus 139 p~s~g~~i~~~~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~E 190 (422)
T TIGR00649 139 PDSVGFALHTPLGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISD 190 (422)
T ss_pred cceEEEEEEeCCcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEEC
Confidence 789999999988899999999987654321 11 1122358999987
No 7
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.90 E-value=1.2e-23 Score=163.36 Aligned_cols=167 Identities=24% Similarity=0.282 Sum_probs=120.2
Q ss_pred eEEEecCcccc-----CCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhH
Q 039453 4 DCLVLGAGQEV-----GKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPF 78 (202)
Q Consensus 4 ~~~~lg~~~~~-----~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~ 78 (202)
++++||+++.. +++|++|+.++..+|||||.+.. .++.+.+....++++|||||.|+||++|++.
T Consensus 1 ~~~~lGtg~~~p~~~r~~~~~~v~~~~~~iLiD~G~g~~----------~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~ 70 (299)
T TIGR02651 1 EITFLGTGGGVPTKERNLPSIALKLNGELWLFDCGEGTQ----------RQMLRSGISPMKIDRIFITHLHGDHILGLPG 70 (299)
T ss_pred CEEEEeCCCCCCCCCCCCceEEEEECCeEEEEECCHHHH----------HHHHHcCCCHHHCcEEEEECCchhhhcChHH
Confidence 58999998874 68999999999999999998742 2343334445789999999999999999998
Q ss_pred hhhhc-----CCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCC-eeeeCCCeEEEEE
Q 039453 79 FTEIC-----GYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQ-TVQVDKDLQIRAY 152 (202)
Q Consensus 79 l~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~ 152 (202)
+.... ....+||+++...+.+........ ....+ ...+..+.+++ .+..+ +++|+++
T Consensus 71 l~~~~~~~~~~~~i~Iy~p~~~~~~l~~~~~~~~--------~~~~~--------~~~~~~~~~~~~~~~~~-~~~v~~~ 133 (299)
T TIGR02651 71 LLSTMSFQGRKEPLTIYGPPGIKEFIETSLRVSY--------TYLNY--------PIKIHEIEEGGLVFEDD-GFKVEAF 133 (299)
T ss_pred HHHhhccCCCCceEEEECCccHHHHHHHHHHHcc--------cCCCc--------eEEEEEccCCCceEecC-CEEEEEE
Confidence 86532 113579999887665433222110 00011 12345667776 57776 8999999
Q ss_pred ecCCccceEEEEEEEC--------------------------------------------------CEEEEEEeeCCCCC
Q 039453 153 YAGHVLGAAMFYAKVG--------------------------------------------------DSAMVYTGDYNMTP 182 (202)
Q Consensus 153 ~~gH~~~~~~~~i~~~--------------------------------------------------~~~il~~gD~~~~~ 182 (202)
+..|...+.+|+++.+ +++++|+||+.+.+
T Consensus 134 ~~~H~~~~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~~g~~i~y~gDt~~~~ 213 (299)
T TIGR02651 134 PLDHSIPSLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPRKGRKIAYTGDTRPCE 213 (299)
T ss_pred EcCCCCceEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCcCCcEEEEecCCCChH
Confidence 9999988999999864 45899999999876
Q ss_pred CCCCCCCCCCCCCCCeEEeC
Q 039453 183 DRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 183 ~~~~~~~~~~~~~~d~li~e 202 (202)
+..... .++|+||+|
T Consensus 214 ~~~~~~-----~~~dlLi~E 228 (299)
T TIGR02651 214 EVIEFA-----KNADLLIHE 228 (299)
T ss_pred HHHHHH-----cCCCEEEEE
Confidence 533222 258999987
No 8
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.89 E-value=6.1e-23 Score=155.53 Aligned_cols=161 Identities=20% Similarity=0.283 Sum_probs=114.9
Q ss_pred eeEEEecCccc------------------c-----CCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCC
Q 039453 3 IDCLVLGAGQE------------------V-----GKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNA 59 (202)
Q Consensus 3 ~~~~~lg~~~~------------------~-----~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~ 59 (202)
||+++||+|.+ . .++|++|+.++..+|||||... +... ..+.+
T Consensus 1 m~~~~lGs~~~~~~p~~~c~c~~c~~~~~~p~~~r~~~s~li~~~~~~iLiD~G~~~----------~~~~----~~~~~ 66 (250)
T PRK11244 1 MRLTLLGTGGAQGVPVFGCECAACARARRDPAYRRRPCSALIEFNGARTLIDAGLPD----------LAER----FPPGS 66 (250)
T ss_pred CEEEEEeccCCCCccCCCccchhhhhhhcCCCCCcceeEEEEEECCCEEEEECCChH----------Hhhc----CCccc
Confidence 68999999888 2 4789999999999999999542 1111 22478
Q ss_pred cCEEEeccCchhhhCChhHhhhhcCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhc-EEecCC
Q 039453 60 IDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKV-IAVDLK 138 (202)
Q Consensus 60 i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 138 (202)
|++|+|||.|.||++|+..+........+||++..+..+. ... . ... ..+. ..+.++
T Consensus 67 i~~i~iTH~H~DHi~gl~~l~~~~~~~i~i~~~~~~~~~~-~~~----~----~~~-------------~~~~~~~l~~~ 124 (250)
T PRK11244 67 LQQILLTHYHMDHVQGLFPLRWGVGDPIPVYGPPDPEGCD-DLF----K----HPG-------------ILDFSHPLEPF 124 (250)
T ss_pred CCEEEEccCchhhhccHHHHHhhcCCceeEEeCCchhhHH-HHh----c----Ccc-------------ccccccccCCC
Confidence 9999999999999999977754322356899887653211 100 0 000 0111 246678
Q ss_pred CeeeeCCCeEEEEEecCCccceEEEEEEECCEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEeC
Q 039453 139 QTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 139 ~~~~~~~~~~v~~~~~gH~~~~~~~~i~~~~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~e 202 (202)
+.+.++ +++|++++..|+.++++|+++.++++++|+||+.+.++..... ....++|+||+|
T Consensus 125 ~~~~~~-~~~I~~~~~~H~~~s~g~~i~~~~~~i~ysgDt~~~~~~~~~~--~~~~~~Dlli~e 185 (250)
T PRK11244 125 EPFDLG-GLQVTPLPLNHSKLTFGYLLETAHSRVAYLTDTVGLPEDTLKF--LRNNQPDLLVLD 185 (250)
T ss_pred CCeeEC-CEEEEEEeeCCCcceeEEEEecCCeEEEEEcCCCCCCHHHHHH--HhcCCCCEEEEe
Confidence 899998 7999999999998999999999999999999998765433211 111258999986
No 9
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=99.89 E-value=6.3e-22 Score=160.31 Aligned_cols=182 Identities=30% Similarity=0.575 Sum_probs=150.2
Q ss_pred ccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEec
Q 039453 13 EVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMT 92 (202)
Q Consensus 13 ~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~ 92 (202)
.-+.-||+++.++.++||||||+..+.. ..+.........||+|+|||++.=|.||++....+.+.+++||++
T Consensus 12 de~~~cyllqiD~~~iLiDcGwd~~f~~-------~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~~~VYAT 84 (764)
T KOG1135|consen 12 DEGPLCYLLQIDGVRILIDCGWDESFDM-------SMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLNAPVYAT 84 (764)
T ss_pred CCCcceEEEEEcCeEEEEeCCCcchhcc-------chhhhhhcccccccEEEecCCChHHhccchhhHhhCCccceEEEe
Confidence 3366899999999999999999876532 223333344578999999999999999999999988888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeC---CCeEEEEEecCCccceEEEEEEECC
Q 039453 93 YPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVD---KDLQIRAYYAGHVLGAAMFYAKVGD 169 (202)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~gH~~~~~~~~i~~~~ 169 (202)
-+..++.+..+.+..... ...+....|+.+++...+.++..+++.|.+.+. .|+++.++++||++|++.|.|...+
T Consensus 85 ~PV~~mG~m~myD~~~S~-~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiGGsIWkI~k~~ 163 (764)
T KOG1135|consen 85 LPVIKMGQMFMYDLYRSH-GNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYNAGHMIGGSIWKISKVG 163 (764)
T ss_pred cchhhhhhhhHHHHHhcc-cccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeecCCCccCceEEEEEecC
Confidence 999998766554333221 122356788888998899999999999999883 4689999999999999999998888
Q ss_pred EEEEEEeeCCCCCCCCCCCCCCCCC-CCCeEEeC
Q 039453 170 SAMVYTGDYNMTPDRHLGAARIDRL-QLDLLITE 202 (202)
Q Consensus 170 ~~il~~gD~~~~~~~~~~~~~~~~~-~~d~li~e 202 (202)
.+|+|+=|.+...+..+....+..+ +|.+||++
T Consensus 164 E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITd 197 (764)
T KOG1135|consen 164 EDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITD 197 (764)
T ss_pred ceEEEEEecccchhcccCCccccccCCcceEEec
Confidence 9999999999999999988888765 89999875
No 10
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.89 E-value=1.5e-22 Score=165.49 Aligned_cols=180 Identities=27% Similarity=0.410 Sum_probs=142.4
Q ss_pred CceeEEEecCccccCCceEEEEECCEEEEEEeecccccCCCC----CCCCccccccccCCCCCcCEEEeccCchhhhCCh
Q 039453 1 MAIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHR----QYPDFSRISKSCDFNNAIDCIVITHFHLDHIGAL 76 (202)
Q Consensus 1 m~~~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~----~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~ 76 (202)
+.++++.||+-+++|.|+++++.++..+++|||......... .+|+..++.+. .++|++|||||+|.||+||+
T Consensus 7 ~~i~i~~lGG~~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n---~~kvkgI~lTHgHeDHIGai 83 (555)
T COG0595 7 AKIKIFALGGVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEEN---KDKVKGIFLTHGHEDHIGAL 83 (555)
T ss_pred CceEEEEecChhhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhc---cccceEEEecCCchhhccch
Confidence 368999999999999999999999999999999987644321 33566666553 36899999999999999999
Q ss_pred hHhhhhcCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCC
Q 039453 77 PFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGH 156 (202)
Q Consensus 77 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH 156 (202)
+++..... .+|||+++.++.+....+.+.... .....+.+++.+..++++ ++++++++..|
T Consensus 84 p~ll~~~~-~~piy~s~lt~~Li~~k~~~~~~~-----------------~~~~~~~ev~~~~~i~~~-~~~v~f~~vtH 144 (555)
T COG0595 84 PYLLKQVL-FAPIYASPLTAALIKEKLKEHGLF-----------------KNENELHEVKPGSEIKFG-SFEVEFFPVTH 144 (555)
T ss_pred HHHHhcCC-cCceecCHhhHHHHHHHHHHhccc-----------------cccCceEEeCCCCeEEeC-cEEEEEEeecc
Confidence 99998642 389999999999887766532211 112467889999999998 79999999999
Q ss_pred c-cceEEEEEEECCEEEEEEeeCCCCCCCCCCC-------CCCCCCCCCeEEeC
Q 039453 157 V-LGAAMFYAKVGDSAMVYTGDYNMTPDRHLGA-------ARIDRLQLDLLITE 202 (202)
Q Consensus 157 ~-~~~~~~~i~~~~~~il~~gD~~~~~~~~~~~-------~~~~~~~~d~li~e 202 (202)
| |+++++.++++.+.|+|+||..+........ +...+...++||+|
T Consensus 145 SIPds~g~~i~Tp~G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~Lisd 198 (555)
T COG0595 145 SIPDSLGIVIKTPEGNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISD 198 (555)
T ss_pred cCccceEEEEECCCccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeC
Confidence 8 5699999999999999999999988655411 12223357888876
No 11
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.89 E-value=7.6e-23 Score=159.04 Aligned_cols=166 Identities=19% Similarity=0.225 Sum_probs=118.5
Q ss_pred EEEecCcccc-----CCceEEEEEC----CEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCC
Q 039453 5 CLVLGAGQEV-----GKSCVVVTIN----GKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGA 75 (202)
Q Consensus 5 ~~~lg~~~~~-----~~~~~li~~~----~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g 75 (202)
+++||++++. +++|++|+.+ +..+|||||.+.. .++.+.+..+.+|++|||||.|+||++|
T Consensus 1 ~~~LGt~~~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~----------~~l~~~~i~~~~id~IfiTH~H~DHi~G 70 (303)
T TIGR02649 1 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQ----------HQLLHTAFNPGKLDKIFISHLHGDHLFG 70 (303)
T ss_pred CEEEecCCCCCCCCCCccEEEEEccCCCCCCEEEEECCccHH----------HHHHHhCCCHHHCcEEEEeCCChhhcCC
Confidence 4789998766 6899999864 4789999999852 2344445556889999999999999999
Q ss_pred hhHhhhhc-----CCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEE
Q 039453 76 LPFFTEIC-----GYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIR 150 (202)
Q Consensus 76 ~~~l~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 150 (202)
++.+.... ....+||+++.+.+.++..+.- . .....+ ...+..+..++.+..+ +++|+
T Consensus 71 l~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~~~----~----~~~~~~--------~~~~~~i~~~~~~~~~-~~~v~ 133 (303)
T TIGR02649 71 LPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRI----S----GSWTDY--------PLEIVEIGAGEILDDG-LRKVT 133 (303)
T ss_pred HHHHHHHHHhcCCCCCeEEEechhHHHHHHHHHHh----c----ccccCC--------ceEEEEcCCCceEecC-CeEEE
Confidence 99875321 1245799999876654432211 0 000111 1234566677777776 79999
Q ss_pred EEecCCccceEEEEEEE--------------------------------------------------CCEEEEEEeeCCC
Q 039453 151 AYYAGHVLGAAMFYAKV--------------------------------------------------GDSAMVYTGDYNM 180 (202)
Q Consensus 151 ~~~~gH~~~~~~~~i~~--------------------------------------------------~~~~il~~gD~~~ 180 (202)
+++..|...+++|+++. ++.+++|+||+.+
T Consensus 134 ~~~~~H~~~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~g~~i~y~gDt~~ 213 (303)
T TIGR02649 134 AYPLEHPLECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVPGKALAIFGDTGP 213 (303)
T ss_pred EEEccCccceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCCCcEEEEecCCCC
Confidence 99999999999999986 4578999999998
Q ss_pred CCCCCCCCCCCCCCCCCeEEeC
Q 039453 181 TPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~li~e 202 (202)
.+...... .++|+||+|
T Consensus 214 ~~~~~~~~-----~~adlLi~E 230 (303)
T TIGR02649 214 CDAALDLA-----KGVDVMVHE 230 (303)
T ss_pred hHHHHHHh-----cCCCEEEEe
Confidence 65422211 259999997
No 12
>PRK02113 putative hydrolase; Provisional
Probab=99.86 E-value=6.1e-21 Score=144.80 Aligned_cols=167 Identities=20% Similarity=0.308 Sum_probs=113.9
Q ss_pred eeEEEecCcccc---------------------CCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcC
Q 039453 3 IDCLVLGAGQEV---------------------GKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAID 61 (202)
Q Consensus 3 ~~~~~lg~~~~~---------------------~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 61 (202)
|++++||+|.+- ..+|++|+.++..+|||||.+... ++.+. ...+++
T Consensus 1 m~~~~lGtg~~~g~P~~~c~c~~C~~~~~~~~R~~~s~li~~~~~~iLiD~G~g~~~----------~l~~~--~~~~id 68 (252)
T PRK02113 1 MKIRILGSGTSTGVPEIGCTCPVCTSKDPRDNRLRTSALVETEGARILIDCGPDFRE----------QMLRL--PFGKID 68 (252)
T ss_pred CEEEEEEeCCCCCeecCCCCCccCCCCCCCCcceeeEEEEEECCeEEEEECCchHHH----------HHHhc--CccccC
Confidence 578999976544 246789999999999999987532 12221 347899
Q ss_pred EEEeccCchhhhCChhHhhhhc-CCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCe
Q 039453 62 CIVITHFHLDHIGALPFFTEIC-GYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQT 140 (202)
Q Consensus 62 ~i~lTH~H~DH~~g~~~l~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (202)
+|+|||.|.||++|++.+.... ....+||+++.+.+.+...... .. ....++.. ...++..+++++.
T Consensus 69 ~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~----~~----~~~~~~~~----~~~~~~~~~~g~~ 136 (252)
T PRK02113 69 AVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVAERLRSRMPY----CF----VEHSYPGV----PNIPLREIEPDRP 136 (252)
T ss_pred EEEECCCChhhhCCHHHHHHhccCCCceEEECHHHHHHHHhhCCe----ee----ccCCCCCC----cceeeEEcCCCCC
Confidence 9999999999999998775321 1256899998776544322100 00 00001100 0134567788899
Q ss_pred eeeCCCeEEEEEecCCc-cceEEEEEEECCEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEeC
Q 039453 141 VQVDKDLQIRAYYAGHV-LGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 141 ~~~~~~~~v~~~~~gH~-~~~~~~~i~~~~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~e 202 (202)
++++ +++|++++..|+ ..+++|++ ++++|+||+.+.++..... . .++|+||+|
T Consensus 137 ~~~~-~~~i~~~~~~H~~~~~~gy~i----~~i~y~~Dt~~~~~~~~~~--~--~~~DlLi~e 190 (252)
T PRK02113 137 FLVN-HTEVTPLRVMHGKLPILGYRI----GKMAYITDMLTMPEEEYEQ--L--QGIDVLVMN 190 (252)
T ss_pred EEEC-CeEEEEEEecCCCccEEEEEe----CCEEEccCCCCCCHHHHHH--h--cCCCEEEEh
Confidence 9998 899999999996 45788888 3699999998765533211 1 258999987
No 13
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.86 E-value=4.9e-21 Score=148.31 Aligned_cols=169 Identities=14% Similarity=0.160 Sum_probs=113.7
Q ss_pred eeEEEecCcccc-------------------------CCceEEEEECC-EEEEEEeecccccCCCCCCCCccccccc---
Q 039453 3 IDCLVLGAGQEV-------------------------GKSCVVVTING-KRIMFDCGMHMAYNDHRQYPDFSRISKS--- 53 (202)
Q Consensus 3 ~~~~~lg~~~~~-------------------------~~~~~li~~~~-~~iLiD~G~~~~~~~~~~~~~~~~l~~~--- 53 (202)
|++++||+|++. ..+|++|+.++ ..+|||||++...+ +.+.
T Consensus 1 m~lt~LGtg~~~g~P~~~C~C~~C~~ar~~~~~~~~R~~ss~li~~~g~~~iLiD~G~g~~~q----------l~~~~~~ 70 (302)
T PRK05184 1 MRIIVLGSAAGGGFPQWNCNCPNCRGARAGTIRAKPRTQSSIAVSADGEDWVLLNASPDIRQQ----------IQATPAL 70 (302)
T ss_pred CEEEEEEecCCCCCCcCCCCchhchhhhcCCCcCCcccccEEEEEcCCCEEEEEECChhHHHH----------HHhchhc
Confidence 678899995443 35788998765 57999999986442 2221
Q ss_pred ----cCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHh
Q 039453 54 ----CDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECM 129 (202)
Q Consensus 54 ----~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (202)
+....+|++|||||.|+||+.|++.+... ...+||+++.+.+.+..... +.. ....+ ..
T Consensus 71 ~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~--~~l~Vyg~~~~~~~l~~~~~-~f~-------~~~~~-------~~ 133 (302)
T PRK05184 71 QPARGLRDTPIAAVVLTDGQIDHTTGLLTLREG--QPFPVYATPAVLEDLSTGFP-IFN-------VLDHY-------GG 133 (302)
T ss_pred CccccCCcccccEEEEeCCchhhhhChHhhccC--CCeEEEeCHHHHHHHHhcCC-ccc-------ccccc-------cc
Confidence 33456899999999999999999998653 46789999988664432100 000 00000 01
Q ss_pred hhcEEecCCCeeeeC--CCeEEEEEecCC-------------ccceEEEEEE--ECCEEEEEEeeCCCCCCCCCCCCCCC
Q 039453 130 KKVIAVDLKQTVQVD--KDLQIRAYYAGH-------------VLGAAMFYAK--VGDSAMVYTGDYNMTPDRHLGAARID 192 (202)
Q Consensus 130 ~~~~~~~~~~~~~~~--~~~~v~~~~~gH-------------~~~~~~~~i~--~~~~~il~~gD~~~~~~~~~~~~~~~ 192 (202)
.....+..++.++++ ++++|++++..| ...+.+|+|+ .++++++|++|....++.+....
T Consensus 134 ~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~~~~~~~~~~~~--- 210 (302)
T PRK05184 134 VQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGLAEVTDALRARL--- 210 (302)
T ss_pred eeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCCCCCCHHHHHHH---
Confidence 244567777788885 379999999765 3558999995 67888999977744444332111
Q ss_pred CCCCCeEEeC
Q 039453 193 RLQLDLLITE 202 (202)
Q Consensus 193 ~~~~d~li~e 202 (202)
..+|+||+|
T Consensus 211 -~gaDlli~d 219 (302)
T PRK05184 211 -AGADCVLFD 219 (302)
T ss_pred -hcCCEEEEe
Confidence 248999987
No 14
>PRK00055 ribonuclease Z; Reviewed
Probab=99.85 E-value=1.1e-21 Score=150.22 Aligned_cols=179 Identities=20% Similarity=0.261 Sum_probs=107.1
Q ss_pred ceeEEEecCcccc-----CCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCCh
Q 039453 2 AIDCLVLGAGQEV-----GKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGAL 76 (202)
Q Consensus 2 ~~~~~~lg~~~~~-----~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~ 76 (202)
+|++++||+|++. +++|++|+.++..+|||||.+... ++.+.+...+++++||+||.|+||++|+
T Consensus 1 ~m~i~~LGsg~~~~~~~r~~~~~li~~~~~~iLiD~G~g~~~----------~l~~~~~~~~~i~~i~lTH~H~DHi~Gl 70 (270)
T PRK00055 1 MMELTFLGTGSGVPTPTRNVSSILLRLGGELFLFDCGEGTQR----------QLLKTGIKPRKIDKIFITHLHGDHIFGL 70 (270)
T ss_pred CeEEEEEecCCCCCcCCCCCCEEEEEECCcEEEEECCHHHHH----------HHHHcCCCHHHCCEEEEeCCCchhhCcH
Confidence 4899999999875 589999999999999999987422 2333344557899999999999999999
Q ss_pred hHhhhhc-----CCCCcEEecHHHHHHHHHHHHHHHHH--HHhhcCCccccchHHHHHHhhhcEEecCCCee-eeCCCeE
Q 039453 77 PFFTEIC-----GYNGPIYMTYPTRALAPIMLEDYRKV--LVDRRGEVEQFTSDHIAECMKKVIAVDLKQTV-QVDKDLQ 148 (202)
Q Consensus 77 ~~l~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 148 (202)
+.+.... ....+||+++...+.+.......... ..........+....... ..+..+..+ ++..+.+
T Consensus 71 ~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~ 145 (270)
T PRK00055 71 PGLLSTRSLSGRTEPLTIYGPKGIKEFVETLLRASGSLGYRIAEKDKPGKLDAEKLKA-----LGVPPGPLFGKLKRGED 145 (270)
T ss_pred HHHHHHhhhcCCCceEEEECCccHHHHHHHHHHHhhceeEEEEEcCCCCCCCHHHHHH-----CCCCCCchHHHhhCCCe
Confidence 9876432 12356999888766544332211100 000000001122111100 011111111 1111222
Q ss_pred EEEEecCCc--cceEEEEEEECCEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEeC
Q 039453 149 IRAYYAGHV--LGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 149 v~~~~~gH~--~~~~~~~i~~~~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~e 202 (202)
+.. .+|. ..+.++.++.++++++|+||+.+.++..... .++|+||+|
T Consensus 146 ~~~--~~~~~i~~~~~~~~~~~g~~~~y~~Dt~~~~~~~~~~-----~~~d~li~E 194 (270)
T PRK00055 146 VTL--EDGRIINPADVLGPPRKGRKVAYCGDTRPCEALVELA-----KGADLLVHE 194 (270)
T ss_pred EEe--CCCcEEeHHHeeccCCCCcEEEEeCCCCCcHHHHHHh-----CCCCEEEEe
Confidence 221 2333 2567888888899999999999876432222 158999987
No 15
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.85 E-value=2.8e-20 Score=139.21 Aligned_cols=151 Identities=19% Similarity=0.212 Sum_probs=108.6
Q ss_pred eeEEEecCccccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhh
Q 039453 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEI 82 (202)
Q Consensus 3 ~~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 82 (202)
|+++++|+ +|++|+.++.++||||+.+... .. .+.. . ..++|+|++||.|.||++++..+...
T Consensus 1 m~i~~lG~------s~~li~~~~~~iLiDP~~~~~~-------~~-~~~~--~-~~~id~vliTH~H~DH~~~~~~~~~~ 63 (228)
T PRK00685 1 MKITWLGH------SAFLIETGGKKILIDPFITGNP-------LA-DLKP--E-DVKVDYILLTHGHGDHLGDTVEIAKR 63 (228)
T ss_pred CEEEEEcc------eEEEEEECCEEEEECCCCCCCC-------CC-CCCh--h-cCcccEEEeCCCCccccccHHHHHHh
Confidence 57899998 8999999999999999764211 11 1111 1 13799999999999999988776543
Q ss_pred cCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCCccc---
Q 039453 83 CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLG--- 159 (202)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH~~~--- 159 (202)
.+.++|++......++.. + ..+...++.+++++++ +++|+++++.|...
T Consensus 64 --~~~~v~~~~~~~~~~~~~------------~-------------~~~~~~~~~~~~~~~~-~~~i~~~p~~H~~~~~~ 115 (228)
T PRK00685 64 --TGATVIANAELANYLSEK------------G-------------VEKTHPMNIGGTVEFD-GGKVKLTPALHSSSFID 115 (228)
T ss_pred --CCCEEEEeHHHHHHHHhc------------C-------------CCceeeccCCCcEEEC-CEEEEEEEEEcCCCCcC
Confidence 367899887654332210 0 1245677888999998 79999999888654
Q ss_pred ---------eEEEEEEECCEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEe
Q 039453 160 ---------AAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLIT 201 (202)
Q Consensus 160 ---------~~~~~i~~~~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~ 201 (202)
..+|+++.++++++|+||+.+.++....... .++|++++
T Consensus 116 ~~~~~~~~~~~g~~i~~~~~~i~~~GDt~~~~~~~~~~~~---~~~D~~~~ 163 (228)
T PRK00685 116 EDGITYLGNPTGFVITFEGKTIYHAGDTGLFSDMKLIGEL---HKPDVALL 163 (228)
T ss_pred CCCcccCCCceEEEEEECCeEEEEecCccchhHHHHHHHh---hCCCEEEE
Confidence 4899999999999999999987753322211 24677764
No 16
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.84 E-value=1.8e-20 Score=141.06 Aligned_cols=149 Identities=17% Similarity=0.259 Sum_probs=104.8
Q ss_pred CCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecHH
Q 039453 15 GKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYP 94 (202)
Q Consensus 15 ~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~ 94 (202)
.++|++|+.++..+|||||... +.. .....+|++|+|||.|.||++|+..+........+||+++.
T Consensus 26 ~~~s~~i~~~~~~iliD~G~~~----------~~~----~~~~~~id~i~iTH~H~DHi~gl~~l~~~~~~~~~v~~~~~ 91 (238)
T TIGR03307 26 QPCSAVIEFNGARTLIDAGLTD----------LAE----RFPPGSLQAILLTHYHMDHVQGLFPLRWGVGEPIPVYGPPD 91 (238)
T ss_pred cceEEEEEECCcEEEEECCChh----------Hhh----ccCccCCCEEEEecCchhhhcchHHHHHhcCCceeEEeCch
Confidence 5678999999999999999542 111 12247899999999999999999776543333578999887
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhc-EEecCCCeeeeCCCeEEEEEecCCccceEEEEEEECCEEEE
Q 039453 95 TRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKV-IAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMV 173 (202)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~gH~~~~~~~~i~~~~~~il 173 (202)
+..... . . ...+ .... ..+..++.+.++ +++|++++..|+.++++|+++.++++++
T Consensus 92 ~~~~~~-----~---~-~~~~-------------~~~~~~~~~~~~~~~~~-~~~i~~~~~~H~~~~~g~~i~~~~~~i~ 148 (238)
T TIGR03307 92 EEGCDD-----L---F-KHPG-------------ILDFSKPLEAFEPFDLG-GLRVTPLPLVHSKLTFGYLLETDGQRVA 148 (238)
T ss_pred HhhHHH-----H---h-cCcc-------------cccccccccCCceEEEC-CEEEEEEecCCCCcceEEEEecCCcEEE
Confidence 632110 0 0 0000 0011 235677889997 8999999999998899999999999999
Q ss_pred EEeeCCCCCCCCCCCCCCCCCCCCeEEeC
Q 039453 174 YTGDYNMTPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 174 ~~gD~~~~~~~~~~~~~~~~~~~d~li~e 202 (202)
|+||+.+.+...... ....++|+||+|
T Consensus 149 y~gDt~~~~~~~~~~--~~~~~~D~li~e 175 (238)
T TIGR03307 149 YLTDTAGLPPDTEAF--LKNHPLDVLILD 175 (238)
T ss_pred EEecCCCCCHHHHHH--HhcCCCCEEEEe
Confidence 999998655432211 111258999987
No 17
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.84 E-value=4.1e-20 Score=142.69 Aligned_cols=157 Identities=13% Similarity=0.101 Sum_probs=106.7
Q ss_pred CceEEEEE-CCEEEEEEeecccccCCCCCCCCccccccc----cCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEE
Q 039453 16 KSCVVVTI-NGKRIMFDCGMHMAYNDHRQYPDFSRISKS----CDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIY 90 (202)
Q Consensus 16 ~~~~li~~-~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~----~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~ 90 (202)
.+|++|+. ++..+|||||++...+ +.++.+. +....+|++||+||.|.||+.|+..+.+. ...+||
T Consensus 38 rss~ll~~~g~~~iLID~Gpd~r~q-------l~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~--~~lpVy 108 (302)
T TIGR02108 38 QSSIAVSADGERWVLLNASPDIRQQ-------IQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREG--QPFTLY 108 (302)
T ss_pred ccEEEEEeCCCEEEEEECCHHHHHH-------HHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCC--CCceEE
Confidence 56788865 5579999999987543 1122211 45568899999999999999999999764 468999
Q ss_pred ecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCC----CeEEEEEecC--------C--
Q 039453 91 MTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDK----DLQIRAYYAG--------H-- 156 (202)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~~~~g--------H-- 156 (202)
+++.+.+.++.. + .+.... ........+..++.+.++. +++|++++.. |
T Consensus 109 a~~~t~~~L~~~------------~---~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~ 171 (302)
T TIGR02108 109 ATEMVLQDLSDN------------P---IFNVLD--HWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRA 171 (302)
T ss_pred ECHHHHHHHHhC------------C---Cccccc--hhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccc
Confidence 999987654320 0 000000 0011234566677776642 5999999977 4
Q ss_pred c----cceEEEEEEEC--CEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEeC
Q 039453 157 V----LGAAMFYAKVG--DSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 157 ~----~~~~~~~i~~~--~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~e 202 (202)
. ...++|+|+.+ +++++|++|+...++.+... + ..+|+||+|
T Consensus 172 ~d~~~~~~~Gy~i~~~~~g~~~~y~tD~g~~~~~~~~~--l--~~~d~liid 219 (302)
T TIGR02108 172 GDPHPGDTLGLKIEDGTTGKRLFYIPGCAEITDDLKAR--M--AGADLVFFD 219 (302)
T ss_pred cCCCCCCcEEEEEEeCCCCcEEEEECCCCCCCHHHHHH--H--hCCCEEEEe
Confidence 1 35789999988 89999999998555443211 1 148999987
No 18
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.83 E-value=2.3e-20 Score=134.62 Aligned_cols=145 Identities=25% Similarity=0.325 Sum_probs=103.3
Q ss_pred cCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecH
Q 039453 14 VGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTY 93 (202)
Q Consensus 14 ~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~ 93 (202)
.+++|++|+.+++.+|||||.+.... .+..+.+.+ .+++++|++||.|.||++|++.+.+. ++.++|++.
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~~------~~~~l~~~~--~~~i~~i~iTH~H~DH~~g~~~~~~~--~~~~i~~~~ 73 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAED------LLAELKKLG--PKDIDAIILTHGHPDHIGGLPELLEA--PGAPVYAPE 73 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhHH------HHHHHHHcC--chhhcEEEecccCcchhccHHHHHhC--CCCcEEEch
Confidence 35699999999999999999653211 112233333 58999999999999999999988876 478999988
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEe-cCCccceEEEEEEECCEEE
Q 039453 94 PTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYY-AGHVLGAAMFYAKVGDSAM 172 (202)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~gH~~~~~~~~i~~~~~~i 172 (202)
.....++..... .. ... ...........+..++++.++ +.++++++ ++|++++++++++ +.++
T Consensus 74 ~~~~~~~~~~~~----~~-----~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~h~~~~~~~~~~--~~~v 137 (183)
T smart00849 74 GTAELLKDLLKL----GG-----ALG----AEAPPPPPDRTLKDGEELDLG-GLELEVIHTPGHTPGSIVLYLP--EGKI 137 (183)
T ss_pred hhhHHHhccchh----cc-----ccC----cCCCCCccceecCCCCEEEeC-CceEEEEECCCCCCCcEEEEEC--CCCE
Confidence 887655432111 00 000 000111245667888999997 67777766 7999999998887 5789
Q ss_pred EEEeeCCCCCCC
Q 039453 173 VYTGDYNMTPDR 184 (202)
Q Consensus 173 l~~gD~~~~~~~ 184 (202)
+|+||+.+..+.
T Consensus 138 l~~gD~~~~~~~ 149 (183)
T smart00849 138 LFTGDLLFSGGI 149 (183)
T ss_pred EEECCeeeccCC
Confidence 999999998873
No 19
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.79 E-value=9.2e-19 Score=132.54 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=94.9
Q ss_pred eEEEecCccccCCc-eEEEEEC--CEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhh
Q 039453 4 DCLVLGAGQEVGKS-CVVVTIN--GKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFT 80 (202)
Q Consensus 4 ~~~~lg~~~~~~~~-~~li~~~--~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~ 80 (202)
+++.++.... | +|+|..+ ++.++||||.... .+..+.+. ..+|++|++||.|+||++|+..+.
T Consensus 2 ~i~~~~~~~d---Ny~Yli~d~~~~~~vlIDp~~~~~--------il~~l~~~---g~~l~~Il~TH~H~DH~gG~~~l~ 67 (258)
T PLN02469 2 KIIPVPCLED---NYAYLIIDESTKDAAVVDPVDPEK--------VLQAAHEH---GAKIKLVLTTHHHWDHAGGNEKIK 67 (258)
T ss_pred eEEEeccccc---eEEEEEEeCCCCeEEEECCCChHH--------HHHHHHHc---CCcccEEEecCCCCccccCHHHHH
Confidence 3444555332 6 9999765 4899999984210 22223322 257999999999999999999999
Q ss_pred hhcCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEe-cCCccc
Q 039453 81 EICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYY-AGHVLG 159 (202)
Q Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~gH~~~ 159 (202)
+.++ +++||++..... . .....+..|+.+.++++..++++. |||+++
T Consensus 68 ~~~~-~~~V~~~~~~~~----------------~---------------~~~~~v~~gd~i~lg~~~~~~vi~tPGHT~g 115 (258)
T PLN02469 68 KLVP-GIKVYGGSLDNV----------------K---------------GCTHPVENGDKLSLGKDVNILALHTPCHTKG 115 (258)
T ss_pred HHCC-CCEEEEechhcC----------------C---------------CCCeEeCCCCEEEECCceEEEEEECCCCCCC
Confidence 8753 689998753200 0 012457788999998446788887 999999
Q ss_pred eEEEEEEEC--CEEEEEEeeCCCCCC
Q 039453 160 AAMFYAKVG--DSAMVYTGDYNMTPD 183 (202)
Q Consensus 160 ~~~~~i~~~--~~~il~~gD~~~~~~ 183 (202)
+++|+++.. +.+++|+||+.+...
T Consensus 116 hi~~~~~~~~~~~~~lFtGDtLf~~g 141 (258)
T PLN02469 116 HISYYVTGKEGEDPAVFTGDTLFIAG 141 (258)
T ss_pred CEEEEeccCCCCCCEEEecCcccCCC
Confidence 999998642 346999999988653
No 20
>PRK02126 ribonuclease Z; Provisional
Probab=99.78 E-value=1.6e-18 Score=135.60 Aligned_cols=136 Identities=15% Similarity=0.171 Sum_probs=86.0
Q ss_pred CCceEEEEEC--CEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhc---CCCCcE
Q 039453 15 GKSCVVVTIN--GKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEIC---GYNGPI 89 (202)
Q Consensus 15 ~~~~~li~~~--~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~---~~~~~v 89 (202)
..|||++..+ +..+|||||. .. ++.. ....+|++|++||.|.||++|++.+.+.. ....+|
T Consensus 15 ~dn~~~l~~~~~~~~iLiD~G~-~~-----------~l~~--~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~i 80 (334)
T PRK02126 15 DDPGLYVDFLFERRALLFDLGD-LH-----------HLPP--RELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRL 80 (334)
T ss_pred CCcEEEEEECCCCeEEEEcCCC-HH-----------HHhh--cCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEE
Confidence 4599999864 7999999997 21 1222 13478999999999999999999997754 124689
Q ss_pred EecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHH------------------HHhhhcEEecCCCeeeeCCCeEEEE
Q 039453 90 YMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA------------------ECMKKVIAVDLKQTVQVDKDLQIRA 151 (202)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~v~~ 151 (202)
|+++.+.+++...+..+..... ...++.|...... ...........+..+..+ +++|++
T Consensus 81 ygp~~~~~~l~~~~~~y~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~a 157 (334)
T PRK02126 81 FGPPGFADQVEHKLAGYTWNLV--ENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEP-WFRVRA 157 (334)
T ss_pred EECHHHHHHHHHHhccccccCc--ccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCC-CEEEEE
Confidence 9999998877665542321100 0000111110000 000011122334445555 899999
Q ss_pred EecCCccceEEEEEEE
Q 039453 152 YYAGHVLGAAMFYAKV 167 (202)
Q Consensus 152 ~~~gH~~~~~~~~i~~ 167 (202)
++..|+..+++|+++.
T Consensus 158 ~~~~H~vp~~gy~~~e 173 (334)
T PRK02126 158 AFLDHGIPCLAFALEE 173 (334)
T ss_pred EEccCCCceeEEEEEe
Confidence 9999999999999984
No 21
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.77 E-value=5.2e-18 Score=131.57 Aligned_cols=122 Identities=18% Similarity=0.206 Sum_probs=92.1
Q ss_pred ceEEEEEC--CEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecHH
Q 039453 17 SCVVVTIN--GKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYP 94 (202)
Q Consensus 17 ~~~li~~~--~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~ 94 (202)
.+|+|..+ +..++||||.... .+..+.+ ...+|++|++||.|+||++|...+.+.+ +++||++..
T Consensus 88 y~Yli~d~~t~~~~vVDP~~a~~--------vl~~l~~---~g~~L~~ILlTH~H~DH~GG~~~L~~~~--ga~V~g~~~ 154 (329)
T PLN02398 88 YAYLLHDEDTGTVGVVDPSEAVP--------VIDALSR---KNRNLTYILNTHHHYDHTGGNLELKARY--GAKVIGSAV 154 (329)
T ss_pred EEEEEEECCCCEEEEEcCCCHHH--------HHHHHHh---cCCCceEEEECCCCchhhCCHHHHHHhc--CCEEEEehH
Confidence 58999654 5789999985321 2223332 2367999999999999999999998875 689999876
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEe-cCCccceEEEEEEECCEEEE
Q 039453 95 TRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYY-AGHVLGAAMFYAKVGDSAMV 173 (202)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~gH~~~~~~~~i~~~~~~il 173 (202)
+....+ .....+..|+.+.++ +.+++++. |||++|+++|+++ +..++
T Consensus 155 ~~~~i~-----------------------------~~d~~v~dGd~i~lg-g~~l~vi~tPGHT~GhI~~~~~--~~~vL 202 (329)
T PLN02398 155 DKDRIP-----------------------------GIDIVLKDGDKWMFA-GHEVLVMETPGHTRGHISFYFP--GSGAI 202 (329)
T ss_pred Hhhhcc-----------------------------CCcEEeCCCCEEEEC-CeEEEEEeCCCcCCCCEEEEEC--CCCEE
Confidence 432110 013467788999998 78888887 9999999999886 44599
Q ss_pred EEeeCCCCCC
Q 039453 174 YTGDYNMTPD 183 (202)
Q Consensus 174 ~~gD~~~~~~ 183 (202)
|+||+.+...
T Consensus 203 FtGDtLf~~g 212 (329)
T PLN02398 203 FTGDTLFSLS 212 (329)
T ss_pred EECCCcCCCC
Confidence 9999998753
No 22
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.76 E-value=3e-18 Score=131.91 Aligned_cols=89 Identities=27% Similarity=0.425 Sum_probs=70.7
Q ss_pred ceeEEEecCccc-----cCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCCh
Q 039453 2 AIDCLVLGAGQE-----VGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGAL 76 (202)
Q Consensus 2 ~~~~~~lg~~~~-----~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~ 76 (202)
+|++++||++++ .+.++++++.++..+|||||.+. ..++...+..+.+|++|+|||.|.||+.|+
T Consensus 1 ~m~i~fLGtg~~~Pt~~r~~~s~ll~~~~~~~L~DcGeGt----------~~~l~~~~~~~~~i~~IfITH~H~DHi~gL 70 (292)
T COG1234 1 MMEITFLGTGGAVPTKDRNVSSILLRLEGEKFLFDCGEGT----------QHQLLRAGLPPRKIDAIFITHLHGDHIAGL 70 (292)
T ss_pred CcEEEEEecCCCCCcCccccceeEEEeCCeeEEEECCHhH----------HHHHHHhcCChhhccEEEeeccccchhcCc
Confidence 479999999998 47899999999999999999885 445666666667999999999999999999
Q ss_pred hHhhhhc---CC--CCcEEecHHHHHHHH
Q 039453 77 PFFTEIC---GY--NGPIYMTYPTRALAP 100 (202)
Q Consensus 77 ~~l~~~~---~~--~~~v~~~~~~~~~~~ 100 (202)
+.+.... +. ...+|.+.....+..
T Consensus 71 ~~ll~~~~~~~~~~~l~iygP~g~~~~~~ 99 (292)
T COG1234 71 PGLLVSRSFRGRREPLKIYGPPGIKEFVE 99 (292)
T ss_pred HHHHHHhhccCCCCceeEECCcchhhhhh
Confidence 9765432 11 246888877765443
No 23
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.76 E-value=2.6e-18 Score=138.01 Aligned_cols=133 Identities=17% Similarity=0.145 Sum_probs=96.0
Q ss_pred cCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecH
Q 039453 14 VGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTY 93 (202)
Q Consensus 14 ~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~ 93 (202)
...|||+|.. ++++|||||....... .+..+.+ ...+++|++|++||.|.||++|++.+.+.+ ++.++|+++
T Consensus 31 ~~~NsyLI~~-~~~vLIDtg~~~~~~~-----~~~~l~~-~~~~~~Id~IilTH~H~DHiggl~~l~~~~-p~a~V~~~~ 102 (394)
T PRK11921 31 SSYNSYLIKD-EKTVLIDTVWQPFAKE-----FVENLKK-EIDLDKIDYIVANHGEIDHSGALPELMKEI-PDTPIYCTK 102 (394)
T ss_pred eEEEEEEEeC-CCEEEEeCCCCCcHHH-----HHHHHHh-hcCcccCCEEEeCCCCCchhhHHHHHHHHC-CCCEEEECH
Confidence 3568999975 6789999997531110 1222222 233468999999999999999999998765 368999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEe-cC-CccceEEEEEEECCEE
Q 039453 94 PTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYY-AG-HVLGAAMFYAKVGDSA 171 (202)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~g-H~~~~~~~~i~~~~~~ 171 (202)
.+...+.... . . ..+...+..|+++.++ +.+++++. |+ |++++++++++ +.+
T Consensus 103 ~~~~~l~~~~--------~-~--------------~~~~~~v~~g~~l~lG-~~~l~~i~tP~~H~p~~~~~y~~--~~~ 156 (394)
T PRK11921 103 NGAKSLKGHY--------H-Q--------------DWNFVVVKTGDRLEIG-SNELIFIEAPMLHWPDSMFTYLT--GDN 156 (394)
T ss_pred HHHHHHHHHh--------C-C--------------CCceEEeCCCCEEeeC-CeEEEEEeCCCCCCCCceEEEEc--CCC
Confidence 8765432110 0 0 0134567889999998 78999887 66 99999999997 556
Q ss_pred EEEEeeCCC
Q 039453 172 MVYTGDYNM 180 (202)
Q Consensus 172 il~~gD~~~ 180 (202)
+||+||+.-
T Consensus 157 vLFsgD~fG 165 (394)
T PRK11921 157 ILFSNDAFG 165 (394)
T ss_pred EEEecCccc
Confidence 999999843
No 24
>PRK04286 hypothetical protein; Provisional
Probab=99.76 E-value=7e-18 Score=130.51 Aligned_cols=189 Identities=19% Similarity=0.174 Sum_probs=102.8
Q ss_pred eeEEEecCcc-ccCCceEEEEECCEEEEEEeecccccCCCCCC--CC-----ccccccccCCCCCcCEEEeccCchhhhC
Q 039453 3 IDCLVLGAGQ-EVGKSCVVVTINGKRIMFDCGMHMAYNDHRQY--PD-----FSRISKSCDFNNAIDCIVITHFHLDHIG 74 (202)
Q Consensus 3 ~~~~~lg~~~-~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~--~~-----~~~l~~~~~~~~~i~~i~lTH~H~DH~~ 74 (202)
|++.+||++. +..+||++|+.++.+||||||.+......... |. ...+.......+++|+||+||.|+||+.
T Consensus 1 m~~~~l~s~s~g~~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~ 80 (298)
T PRK04286 1 MKIIPLASESLGVRSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHT 80 (298)
T ss_pred CEEEEEEeCCCCceeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCC
Confidence 3455666633 22458999999999999999966432210000 01 0112222444578999999999999998
Q ss_pred ChhHhhhh---cCCCCcEEecHHHHHHHHHH-HHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEE
Q 039453 75 ALPFFTEI---CGYNGPIYMTYPTRALAPIM-LEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIR 150 (202)
Q Consensus 75 g~~~l~~~---~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 150 (202)
++..+.-. .....++|+...+....... . ........ ..+. ... ........+..++.+.++ +++|+
T Consensus 81 g~~~~~y~~~~~~~~i~iy~~~~~~~~~~~~~~-~~~~~~~~-----~~~~-~~v-~~~~~~~~~~~g~~~~ig-~~~V~ 151 (298)
T PRK04286 81 PFYEDPYELSDEEIPKEIYKGKIVLIKDPTENI-NWSQRRRA-----PRFL-KAV-KDIAKKIEYADGKTFRFG-GTTIE 151 (298)
T ss_pred CccccccccccccchHHHhcCceecccCHHHHc-CHHHHhhH-----HhHH-HHH-HhcCCceEECCCCEEEEC-CEEEE
Confidence 87654200 00124555554443110000 0 00000000 0000 000 001123456778899998 79999
Q ss_pred EE-ecCCccc--eE----EEEEEECCEEEEEEeeCC-CCCCCCCCCCCCCCCCCCeEEeC
Q 039453 151 AY-YAGHVLG--AA----MFYAKVGDSAMVYTGDYN-MTPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 151 ~~-~~gH~~~--~~----~~~i~~~~~~il~~gD~~-~~~~~~~~~~~~~~~~~d~li~e 202 (202)
+. +..|... .. +++++.++++++|+||+. ...+... ..+....+|+|++|
T Consensus 152 ~~~~v~H~~~~~~~Gy~i~~ri~~gg~~~~~~gDt~~~~~~~~~--~~l~~~d~dlLi~~ 209 (298)
T PRK04286 152 FSPPVPHGADGSKLGYVIMVRISDGDESFVFASDVQGPLNDEAV--EFILEKKPDVVIIG 209 (298)
T ss_pred EeccCCCCCCCCccceEEEEEEEeCCEEEEEECCCCCCCCHHHH--HHHhcCCCCEEEeC
Confidence 76 5688643 44 446678899999999999 3232221 11111258888875
No 25
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.75 E-value=8e-18 Score=126.61 Aligned_cols=126 Identities=17% Similarity=0.212 Sum_probs=90.6
Q ss_pred CCceEEEEE----CCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEE
Q 039453 15 GKSCVVVTI----NGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIY 90 (202)
Q Consensus 15 ~~~~~li~~----~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~ 90 (202)
+.+||++.. .++.+|||||...... .+..+.+.+ .+|.+|++||.|+||++|...+.+.+ .+++++
T Consensus 22 ~~~~Yll~d~~~~~~~avlIDP~~~~~~~------~l~~l~~~g---~~i~~Il~TH~H~DHigg~~~l~~~~-~~a~v~ 91 (251)
T PLN02962 22 STYTYLLADVSHPDKPALLIDPVDKTVDR------DLSLVKELG---LKLIYAMNTHVHADHVTGTGLLKTKL-PGVKSI 91 (251)
T ss_pred eeEEEEEEeCCCCCCEEEEECCCCCcHHH------HHHHHHHCC---CeeEEEEcCCCCchhHHHHHHHHHHC-CCCeEE
Confidence 459999975 3689999998421110 122333322 46899999999999999999998764 267888
Q ss_pred ecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEe-cCCccceEEEEEEEC-
Q 039453 91 MTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYY-AGHVLGAAMFYAKVG- 168 (202)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~gH~~~~~~~~i~~~- 168 (202)
+.... . ......+..++.+.++ +.+++++. |||++++++|+++.+
T Consensus 92 ~~~~~-------------------~-------------~~~d~~l~~g~~i~~g-~~~l~vi~tPGHT~g~v~~~~~d~~ 138 (251)
T PLN02962 92 ISKAS-------------------G-------------SKADLFVEPGDKIYFG-DLYLEVRATPGHTAGCVTYVTGEGP 138 (251)
T ss_pred ecccc-------------------C-------------CCCCEEeCCCCEEEEC-CEEEEEEECCCCCcCcEEEEeccCC
Confidence 75311 0 0112357788999998 79999888 999999999988532
Q ss_pred ---CEEEEEEeeCCCCCC
Q 039453 169 ---DSAMVYTGDYNMTPD 183 (202)
Q Consensus 169 ---~~~il~~gD~~~~~~ 183 (202)
..+++|+||+.+...
T Consensus 139 ~~~~~~~lftGD~Lf~~g 156 (251)
T PLN02962 139 DQPQPRMAFTGDALLIRG 156 (251)
T ss_pred CCCccceEEECCeeccCC
Confidence 346999999988754
No 26
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.74 E-value=1.3e-17 Score=121.62 Aligned_cols=147 Identities=26% Similarity=0.366 Sum_probs=96.8
Q ss_pred EEEEEeecccccCCCCCCCCcc-ccccccCCCCCcCEEEeccCchhhhCChhHhhhhcC-CCCcEEecHHHHHHHHHHHH
Q 039453 27 RIMFDCGMHMAYNDHRQYPDFS-RISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICG-YNGPIYMTYPTRALAPIMLE 104 (202)
Q Consensus 27 ~iLiD~G~~~~~~~~~~~~~~~-~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~-~~~~v~~~~~~~~~~~~~~~ 104 (202)
++|||||++.. +. .+. .+........++++|+|||.|.||+.|++.+..... ...++|+++.+.+.+...
T Consensus 2 ~iLiD~g~~~~-~~-----~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~-- 73 (194)
T PF12706_consen 2 RILIDCGPGTR-SL-----RLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREY-- 73 (194)
T ss_dssp EEEESE-TTHH-HH-----THCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHH--
T ss_pred EEEEeCCCCcc-cc-----cccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhh--
Confidence 79999999754 10 011 111111111389999999999999999877765431 112899999887765432
Q ss_pred HHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCCccceEE----EEEEECCEEEEEEeeCCC
Q 039453 105 DYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAM----FYAKVGDSAMVYTGDYNM 180 (202)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH~~~~~~----~~i~~~~~~il~~gD~~~ 180 (202)
. ..... ..+... ......+..++.++++ ++++++++..|..+..+ |+++.++++++|+||+.+
T Consensus 74 ~--~~~~~---~~~~~~-------~~~~~~~~~~~~~~~~-~~~i~~~~~~H~~~~~~~~~g~~i~~~~~~i~~~gD~~~ 140 (194)
T PF12706_consen 74 K--FGILD---LYPEED-------NFDIIEISPGDEFEIG-DFRITPFPANHGPPSYGGNKGFVIEPDGKKIFYSGDTNY 140 (194)
T ss_dssp H--HTHHT---TCCTTS-------GEEEEEECTTEEEEET-TEEEEEEEEESSSCCEEECCEEEEEETTEEEEEETSSSS
T ss_pred h--ccccc---cccccc-------ceeEEEeccCceEEec-eEEEEEEeccccccccccCceEEEecCCcceEEeeccch
Confidence 0 00000 000000 1345677788899998 79999999999988887 999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCeEEeC
Q 039453 181 TPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 181 ~~~~~~~~~~~~~~~~d~li~e 202 (202)
+ + +.+ .++|++|+|
T Consensus 141 --~-~---~~~--~~~D~li~~ 154 (194)
T PF12706_consen 141 --D-F---EEL--KNIDLLILE 154 (194)
T ss_dssp --C-H---HHH--TTBSEEEEE
T ss_pred --h-h---hhh--ccCCEEEEe
Confidence 2 1 222 359999986
No 27
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.74 E-value=7.9e-18 Score=127.15 Aligned_cols=120 Identities=22% Similarity=0.341 Sum_probs=90.7
Q ss_pred ceEEEEECC-EEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecHHH
Q 039453 17 SCVVVTING-KRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPT 95 (202)
Q Consensus 17 ~~~li~~~~-~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~~ 95 (202)
.+|+|..++ +.+|||||.... .+..+.+.+ .++++|++||.|.||++|+..+.+.+ +++||++..+
T Consensus 11 ~~yli~~~~~~~ilID~g~~~~--------i~~~l~~~g---~~l~~Il~TH~H~DHigG~~~l~~~~--~~~V~~~~~~ 77 (248)
T TIGR03413 11 YIWLLHDPDGQAAVVDPGEAEP--------VLDALEARG---LTLTAILLTHHHHDHVGGVAELLEAF--PAPVYGPAEE 77 (248)
T ss_pred EEEEEEcCCCCEEEEcCCChHH--------HHHHHHHcC---CeeeEEEeCCCCccccCCHHHHHHHC--CCeEEecccc
Confidence 667776654 899999996421 223343332 46899999999999999999998875 4889987643
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEe-cCCccceEEEEEEECCEEEEE
Q 039453 96 RALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYY-AGHVLGAAMFYAKVGDSAMVY 174 (202)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~gH~~~~~~~~i~~~~~~il~ 174 (202)
. .+ .....+..++.+.++ +.+++++. +||++++++++++ +.+++|
T Consensus 78 ~-----------------------~~--------~~~~~v~~g~~~~~g-~~~i~v~~tpGHT~g~i~~~~~--~~~~lf 123 (248)
T TIGR03413 78 R-----------------------IP--------GITHPVKDGDTVTLG-GLEFEVLAVPGHTLGHIAYYLP--DSPALF 123 (248)
T ss_pred c-----------------------CC--------CCcEEeCCCCEEEEC-CEEEEEEECCCCCcccEEEEEC--CCCEEE
Confidence 0 00 123567889999998 78999888 8999999999997 456999
Q ss_pred EeeCCCCCC
Q 039453 175 TGDYNMTPD 183 (202)
Q Consensus 175 ~gD~~~~~~ 183 (202)
+||+.+...
T Consensus 124 tGDtl~~~g 132 (248)
T TIGR03413 124 CGDTLFSAG 132 (248)
T ss_pred EcCccccCC
Confidence 999987653
No 28
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.73 E-value=2.4e-17 Score=119.24 Aligned_cols=150 Identities=19% Similarity=0.203 Sum_probs=89.9
Q ss_pred CCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecHH
Q 039453 15 GKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYP 94 (202)
Q Consensus 15 ~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~ 94 (202)
++|||+|+.+++.+|||||....... ...+...+...++|++|++||.|.||++|+..+.+.. ....+....
T Consensus 5 ~~n~~li~~~~~~iliD~G~~~~~~~------~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~--~~~~~~~~~ 76 (194)
T PF00753_consen 5 GSNSYLIEGGDGAILIDTGLDPDFAK------ELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAG--PVVIIYSSA 76 (194)
T ss_dssp EEEEEEEEETTEEEEESEBSSHHHHH------HHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHT--TEEEEEEHH
T ss_pred eEEEEEEEECCEEEEEeCCCCchhhH------HhhhhHhhccCCCeEEEEECccccccccccccccccc--ceeeeeccc
Confidence 45999999999999999999764321 1111223555689999999999999999999999874 333343333
Q ss_pred HHHHHH-HHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEe-cCCccceEEEEEEECCEEE
Q 039453 95 TRALAP-IMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYY-AGHVLGAAMFYAKVGDSAM 172 (202)
Q Consensus 95 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~gH~~~~~~~~i~~~~~~i 172 (202)
...... ........... .......................+.... ++|+..++.+.. +++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v 140 (194)
T PF00753_consen 77 DAAKAIRPPDRDSASRRG--------------PAVPPPPIIDEDEDDLEIGGDRILFIIPGPGHGSDSLIIYL--PGGKV 140 (194)
T ss_dssp HHHHHHHHHHHHHHHHHH--------------HHHESEEEEEETTTEEEEETTEEEEEEESSSSSTTEEEEEE--TTTTE
T ss_pred cccccccccccccccccc--------------cccccccceeeecccccccccccccceeccccCCcceEEEe--CCCcE
Confidence 333211 11111111000 0001122223333334443245555443 666666666555 57789
Q ss_pred EEEeeCCCCCCCCCCC
Q 039453 173 VYTGDYNMTPDRHLGA 188 (202)
Q Consensus 173 l~~gD~~~~~~~~~~~ 188 (202)
+|+||+.+........
T Consensus 141 lftGD~~~~~~~~~~~ 156 (194)
T PF00753_consen 141 LFTGDLLFSNEHPNPD 156 (194)
T ss_dssp EEEETTSCTTTSSSSS
T ss_pred EEeeeEeccCCccccc
Confidence 9999999988765433
No 29
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.73 E-value=1.2e-16 Score=125.70 Aligned_cols=167 Identities=17% Similarity=0.162 Sum_probs=105.0
Q ss_pred ceeEEEecCccccCCceEEEEE-CCEEEEEEeecccccCC--CC---------------CC-CCccccc--cccCCCCCc
Q 039453 2 AIDCLVLGAGQEVGKSCVVVTI-NGKRIMFDCGMHMAYND--HR---------------QY-PDFSRIS--KSCDFNNAI 60 (202)
Q Consensus 2 ~~~~~~lg~~~~~~~~~~li~~-~~~~iLiD~G~~~~~~~--~~---------------~~-~~~~~l~--~~~~~~~~i 60 (202)
++++++||+ ++++|++ ++.+||||+-.+..... +. .+ |.+.... -......+|
T Consensus 37 ~~~~~wlG~------a~~li~~~~g~~ILiD~~~~~g~~~~~~~~~~~~~~~~~~~G~~~~~P~lr~~p~~idp~~i~~I 110 (355)
T PRK11709 37 TFAMWWLGC------TGIWLKTEGGTNVCVDLWCGTGKQTHGNPLMKRGHQMARMAGVRKLQPNLRTQPFVLDPFAIREI 110 (355)
T ss_pred cEEEEEecc------eEEEEEcCCCcEEEEeecCCCCCccccccccccccchhhhccccccCCCCCCCCcccCHHHCCCC
Confidence 578999999 8999998 68999999421111000 00 00 0000000 000123689
Q ss_pred CEEEeccCchhhhC--ChhHhhhhcCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCC
Q 039453 61 DCIVITHFHLDHIG--ALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLK 138 (202)
Q Consensus 61 ~~i~lTH~H~DH~~--g~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (202)
|+|++||.|.||+. .+..+.+..+...+++++.....++... + .+ ..++..++.|
T Consensus 111 DaVLiTH~H~DHlD~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~------------G----vp-------~~rv~~v~~G 167 (355)
T PRK11709 111 DAVLATHDHSDHIDVNVAAAVLQNCADHVKFIGPQACVDLWIGW------------G----VP-------KERCIVVKPG 167 (355)
T ss_pred CEEEECCCcccccChHHHHHHHhhcCCCcEEEEcHHHHHHHHhc------------C----CC-------cceEEEecCC
Confidence 99999999999984 2334444332346688877765432220 0 00 1357789999
Q ss_pred CeeeeCCCeEEEEEecCC-----------cc-----------ceEEEEEEECCEEEEEEeeCCCCCCCCCCCCCCCCCCC
Q 039453 139 QTVQVDKDLQIRAYYAGH-----------VL-----------GAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQL 196 (202)
Q Consensus 139 ~~~~~~~~~~v~~~~~gH-----------~~-----------~~~~~~i~~~~~~il~~gD~~~~~~~~~~~~~~~~~~~ 196 (202)
++++++ +++|+++++-| .. ..++|+++.++++++|+||+.+.+......... ++
T Consensus 168 e~i~ig-~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~~~~i~~~~---~i 243 (355)
T PRK11709 168 DVVKVK-DIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNYFAKHGNDH---QI 243 (355)
T ss_pred CcEEEC-CEEEEEEeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHHHHHHHhcC---CC
Confidence 999998 79999998743 21 247899999999999999999976433222222 37
Q ss_pred CeEEe
Q 039453 197 DLLIT 201 (202)
Q Consensus 197 d~li~ 201 (202)
|++++
T Consensus 244 Dvall 248 (355)
T PRK11709 244 DVALG 248 (355)
T ss_pred CEEEe
Confidence 87764
No 30
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.71 E-value=3.6e-17 Score=133.81 Aligned_cols=134 Identities=19% Similarity=0.149 Sum_probs=94.7
Q ss_pred cCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecH
Q 039453 14 VGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTY 93 (202)
Q Consensus 14 ~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~ 93 (202)
...|||||+ +++.+|||+|....... .+..+.+ ...+.+|++|++||.|.||+|+++.+.+.+ ++++||+++
T Consensus 33 ~t~NsYLI~-~~~~vLIDtg~~~~~~~-----~l~~l~~-~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~-p~a~V~~s~ 104 (479)
T PRK05452 33 SSYNSYLIR-EEKNVLIDTVDHKFSRE-----FVQNLRN-EIDLADIDYIVINHAEEDHAGALTELMAQI-PDTPIYCTA 104 (479)
T ss_pred cEEEEEEEE-CCCEEEEeCCCcccHHH-----HHHHHHh-cCCHhhCCEEEeCCCCcchhchHHHHHHHC-CCCEEEECH
Confidence 356999998 46899999995321100 1222222 223468999999999999999999998765 378999998
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEe-cC-CccceEEEEEEECCEE
Q 039453 94 PTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYY-AG-HVLGAAMFYAKVGDSA 171 (202)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~g-H~~~~~~~~i~~~~~~ 171 (202)
.+...+... .. . + ...+..+..|+++.++++.+++++. |+ |++++++++++ +.+
T Consensus 105 ~~~~~l~~~--------~~-~---~----------~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~y~~--~~~ 160 (479)
T PRK05452 105 NAIDSINGH--------HH-H---P----------EWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYLT--GDA 160 (479)
T ss_pred HHHHHHHHh--------hc-C---C----------cCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEEEEc--CCC
Confidence 886543210 00 0 0 0135678889999998556777776 64 99999999987 556
Q ss_pred EEEEeeCC
Q 039453 172 MVYTGDYN 179 (202)
Q Consensus 172 il~~gD~~ 179 (202)
+||+||+.
T Consensus 161 vLFsgD~f 168 (479)
T PRK05452 161 VLFSNDAF 168 (479)
T ss_pred EEEecccc
Confidence 99999973
No 31
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.70 E-value=1.5e-16 Score=135.33 Aligned_cols=160 Identities=14% Similarity=0.178 Sum_probs=112.1
Q ss_pred eeEEEecCccccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhh
Q 039453 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEI 82 (202)
Q Consensus 3 ~~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 82 (202)
.+++++..|++ .|++|+.+++++|||+|..............+.+...+. + +|++++||.|.||+||++.+.+.
T Consensus 440 ~~v~~lDVGqG---daili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi--~-ID~lilTH~d~DHiGGl~~ll~~ 513 (662)
T TIGR00361 440 WQVDMLDVGQG---LAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGI--K-LEALILSHADQDHIGGAEIILKH 513 (662)
T ss_pred EEEEEEecCCc---eEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCC--C-cCEEEECCCchhhhCcHHHHHHh
Confidence 57888888877 899999999999999997532211100012334544444 5 99999999999999999999987
Q ss_pred cCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCC------
Q 039453 83 CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGH------ 156 (202)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH------ 156 (202)
++ ..+++.+.... . . ......+..|+.++++ +++++++.|..
T Consensus 514 ~~-v~~i~~~~~~~----~------------~--------------~~~~~~~~~G~~~~~~-~~~~~vL~P~~~~~~~~ 561 (662)
T TIGR00361 514 HP-VKRLVIPKGFV----E------------E--------------GVAIEECKRGDVWQWQ-GLQFHVLSPEAPDPASK 561 (662)
T ss_pred CC-ccEEEeccchh----h------------C--------------CCceEecCCCCEEeEC-CEEEEEECCCCccCCCC
Confidence 53 34566543310 0 0 0123456778899997 79999987542
Q ss_pred ccceEEEEEEECCEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEe
Q 039453 157 VLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLIT 201 (202)
Q Consensus 157 ~~~~~~~~i~~~~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~ 201 (202)
...++.+.++.++.+++|+||.....+..+.. ..+..++|+|..
T Consensus 562 N~~S~vl~i~~~~~~~L~tGD~~~~~E~~l~~-~~~~l~~dvLk~ 605 (662)
T TIGR00361 562 NNHSCVLWVDDGGNSWLLTGDLEAEGEQEVMR-VFPNIKADVLQV 605 (662)
T ss_pred CCCceEEEEEECCeeEEEecCCCHHHHHHHHh-cccCcCccEEEe
Confidence 24578999999999999999999987755433 234457888853
No 32
>PRK11539 ComEC family competence protein; Provisional
Probab=99.70 E-value=1e-16 Score=137.91 Aligned_cols=157 Identities=20% Similarity=0.213 Sum_probs=109.6
Q ss_pred eeEEEecCccccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhh
Q 039453 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEI 82 (202)
Q Consensus 3 ~~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 82 (202)
.+++++..|++ .|.+|+.+++++|+|||.............++.+...+. ++|++++||.|.||+||++.+.+.
T Consensus 501 ~~v~~lDVGqG---~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi---~lD~lilSH~d~DH~GGl~~Ll~~ 574 (755)
T PRK11539 501 WRVDMLDVGHG---LAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGL---TPEGIILSHEHLDHRGGLASLLHA 574 (755)
T ss_pred EEEEEEEccCc---eEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCC---CcCEEEeCCCCcccCCCHHHHHHh
Confidence 57788888877 889999999999999997532111000001234444443 499999999999999999999987
Q ss_pred cCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEec-CCc----
Q 039453 83 CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYA-GHV---- 157 (202)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-gH~---- 157 (202)
++ ..+++.+.... +......|+.++.+ +++++++.| +|.
T Consensus 575 ~~-~~~i~~~~~~~----------------------------------~~~~~~~g~~~~~~-~~~~~vL~P~~~~~~~~ 618 (755)
T PRK11539 575 WP-MAWIRSPLNWA----------------------------------NHLPCVRGEQWQWQ-GLTFSVHWPLEQSNDAG 618 (755)
T ss_pred CC-cceeeccCccc----------------------------------CcccccCCCeEeEC-CEEEEEEecCcccCCCC
Confidence 53 45677543110 01123467888887 799998864 343
Q ss_pred -cceEEEEEEECCEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEe
Q 039453 158 -LGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLIT 201 (202)
Q Consensus 158 -~~~~~~~i~~~~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~ 201 (202)
..+++++++.++.+++++||.....+..+.......+++|+|..
T Consensus 619 N~~S~Vl~i~~~~~~~LltGDi~~~~E~~Ll~~~~~~l~~dvL~v 663 (755)
T PRK11539 619 NNDSCVIRVDDGKHSILLTGDLEAQAEQKLLSRYWQQLAATLLQV 663 (755)
T ss_pred CCccEEEEEEECCEEEEEEeCCChHHHHHHHhcCccCcCCCEEEe
Confidence 45899999999999999999998887655443223457888863
No 33
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.69 E-value=2.4e-16 Score=120.09 Aligned_cols=163 Identities=18% Similarity=0.242 Sum_probs=115.5
Q ss_pred eEEEecCccccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhc
Q 039453 4 DCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEIC 83 (202)
Q Consensus 4 ~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~ 83 (202)
++.++..|++ .+++++.++..+++|+|....... .+++|...+ .++||.+++||.|.||+||++.+.+.+
T Consensus 45 ~~~~lDvGqg---~a~li~~~~~~~l~dtg~~~~~~~-----iip~Lk~~G--V~~iD~lIlTH~d~DHiGg~~~vl~~~ 114 (293)
T COG2333 45 KVHMLDVGQG---LATLIRSEGKTILYDTGNSMGQDV-----IIPYLKSLG--VRKLDQLILTHPDADHIGGLDEVLKTI 114 (293)
T ss_pred eEEEEEcCCC---eEEEEeeCCceEEeecCcccCcee-----ehhhHhHcC--CccccEEEeccCCccccCCHHHHHhhC
Confidence 4566666655 789999999999999998632211 455666655 488999999999999999999999865
Q ss_pred CCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecC-Cc-----
Q 039453 84 GYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAG-HV----- 157 (202)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g-H~----- 157 (202)
. -.++|+......-.....+ ...........|+.++++ +..++++.|. ..
T Consensus 115 ~-v~~~~i~~~~~~~~~~~~~----------------------~~~~~~~~~~~G~~~~~~-~~~f~vl~P~~~~~~~~N 170 (293)
T COG2333 115 K-VPELWIYAGSDSTSTFVLR----------------------DAGIPVRSCKAGDSWQWG-GVVFQVLSPVGGVSDDLN 170 (293)
T ss_pred C-CCcEEEeCCCCccchhhhh----------------------hcCCceeccccCceEEEC-CeEEEEEcCCcccccccc
Confidence 3 2345554433221011000 001245566778999998 7999988753 32
Q ss_pred cceEEEEEEECCEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEe
Q 039453 158 LGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLIT 201 (202)
Q Consensus 158 ~~~~~~~i~~~~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~ 201 (202)
..++..++++++.+++++||+.-..+..+.. ..+++++|+|..
T Consensus 171 ~~S~Vl~v~~g~~s~LlTGD~e~~~E~~l~~-~~~~l~~dVLkV 213 (293)
T COG2333 171 NDSCVLRVTFGGNSFLLTGDLEEKGEKLLKK-YGPDLRADVLKV 213 (293)
T ss_pred CcceEEEEEeCCeeEEEecCCCchhHHHHHh-hCCCccceEEEe
Confidence 3589999999999999999999999955444 455578998853
No 34
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.69 E-value=1.6e-16 Score=120.26 Aligned_cols=119 Identities=21% Similarity=0.308 Sum_probs=87.0
Q ss_pred ceEEEEE-CCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecHHH
Q 039453 17 SCVVVTI-NGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPT 95 (202)
Q Consensus 17 ~~~li~~-~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~~ 95 (202)
.+|++.. +++.+|||||.... .+..+.+.+ .++++|++||.|.||++|+..+.+.++ .++||++...
T Consensus 13 y~~li~~~~~~~ilIDpg~~~~--------vl~~l~~~g---~~l~~IllTH~H~DHigG~~~l~~~~~-~~~V~~~~~~ 80 (251)
T PRK10241 13 YIWVLNDEAGRCLIVDPGEAEP--------VLNAIAENN---WQPEAIFLTHHHHDHVGGVKELVEKFP-QIVVYGPQET 80 (251)
T ss_pred EEEEEEcCCCcEEEECCCChHH--------HHHHHHHcC---CccCEEEeCCCCchhhccHHHHHHHCC-CCEEEecccc
Confidence 4477754 46799999996421 233344333 457899999999999999999998753 5789986532
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEe-cCCccceEEEEEEECCEEEEE
Q 039453 96 RALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYY-AGHVLGAAMFYAKVGDSAMVY 174 (202)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~gH~~~~~~~~i~~~~~~il~ 174 (202)
.. . .....+..|+++.++ +.+++++. +||+++++++..+ .++|
T Consensus 81 ~~----------------~---------------~~~~~v~~g~~i~ig-~~~~~vi~tPGHT~ghi~~~~~----~~lF 124 (251)
T PRK10241 81 QD----------------K---------------GTTQVVKDGETAFVL-GHEFSVFATPGHTLGHICYFSK----PYLF 124 (251)
T ss_pred cc----------------c---------------CCceEeCCCCEEEeC-CcEEEEEEcCCCCccceeeecC----CcEE
Confidence 10 0 012456778999998 78888888 9999999999652 4899
Q ss_pred EeeCCCCCC
Q 039453 175 TGDYNMTPD 183 (202)
Q Consensus 175 ~gD~~~~~~ 183 (202)
+||+.+...
T Consensus 125 tGDtlf~~g 133 (251)
T PRK10241 125 CGDTLFSGG 133 (251)
T ss_pred EcCeeccCC
Confidence 999998753
No 35
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.68 E-value=3.5e-16 Score=118.04 Aligned_cols=159 Identities=21% Similarity=0.316 Sum_probs=97.1
Q ss_pred eEEEecCccccCCceEEEEECC-EEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhh
Q 039453 4 DCLVLGAGQEVGKSCVVVTING-KRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEI 82 (202)
Q Consensus 4 ~~~~lg~~~~~~~~~~li~~~~-~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 82 (202)
.....+.......+++++..++ ..+|||||........ ....+...+ .+|++|++||.|+||++|+..+.+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~liD~G~~~~~~~~----~~~~l~~~~---~~i~~vilTH~H~DH~gg~~~~~~~ 85 (252)
T COG0491 13 TAFPIGVGPLSGNSVYLLVDGEGGAVLIDTGLGDADAEA----LLEALAALG---LDVDAILLTHGHFDHIGGAAVLKEA 85 (252)
T ss_pred EEEEecCcccccccEEEEEcCCCceEEEeCCCCchHHHH----HHHHHHHcC---CChheeeecCCchhhhccHHHHHhh
Confidence 3444443333444566666665 8999999986521000 112222222 2899999999999999999999886
Q ss_pred cCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEe-cCCccceE
Q 039453 83 CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYY-AGHVLGAA 161 (202)
Q Consensus 83 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~gH~~~~~ 161 (202)
.. ..+++.................... ......+ .......+..++.+.++ +..+++++ +||++|++
T Consensus 86 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~i~tpGHT~g~~ 153 (252)
T COG0491 86 FG-AAPVIAPAEVPLLLREEILRKAGVT----AEAYAAP------GASPLRALEDGDELDLG-GLELEVLHTPGHTPGHI 153 (252)
T ss_pred cC-CceEEccchhhhhhhcccccccccc----cccCCCC------ccccceecCCCCEEEec-CeEEEEEECCCCCCCeE
Confidence 42 3667544444332222111000000 0000011 01234455678889988 67777777 89999999
Q ss_pred EEEEEECCEEEEEEeeCCCCCC
Q 039453 162 MFYAKVGDSAMVYTGDYNMTPD 183 (202)
Q Consensus 162 ~~~i~~~~~~il~~gD~~~~~~ 183 (202)
+++++.++ ++|+||..+...
T Consensus 154 ~~~~~~~~--~l~~gD~~~~~~ 173 (252)
T COG0491 154 VFLLEDGG--VLFTGDTLFAGD 173 (252)
T ss_pred EEEECCcc--EEEecceeccCC
Confidence 99999555 999999999886
No 36
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.65 E-value=6.8e-16 Score=114.71 Aligned_cols=131 Identities=21% Similarity=0.225 Sum_probs=91.9
Q ss_pred CceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecHHH
Q 039453 16 KSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPT 95 (202)
Q Consensus 16 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~~ 95 (202)
+++||+..++.+...|.+.-.... . ....+.+.-....++.+|+.||.|+||+||+..+.+.+..++++|.....
T Consensus 13 Ny~YLl~~~~~~~~a~~vDP~~pe--~---v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~v~g~~~~ 87 (265)
T KOG0813|consen 13 NYMYLLGDGDKTIDADLVDPAEPE--Y---VIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIKVIGGADD 87 (265)
T ss_pred ceEEEEecccceeeeeeecCcchH--H---HHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcEEecCChh
Confidence 489999876766666665432111 0 01111110113478999999999999999999999875556778876411
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEe-cCCccceEEEEEE-ECCEEEE
Q 039453 96 RALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYY-AGHVLGAAMFYAK-VGDSAMV 173 (202)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~gH~~~~~~~~i~-~~~~~il 173 (202)
+. + .-...++.++.+.++ |.+|+++. |||+.++++|++. ..+...+
T Consensus 88 -r~-~-----------------------------~i~~~~~~~e~~~~~-g~~v~~l~TPgHT~~hi~~~~~~~~~e~~i 135 (265)
T KOG0813|consen 88 -RI-P-----------------------------GITRGLKDGETVTVG-GLEVRCLHTPGHTAGHICYYVTESTGERAI 135 (265)
T ss_pred -cC-c-----------------------------cccccCCCCcEEEEC-CEEEEEEeCCCccCCcEEEEeecCCCCCeE
Confidence 00 0 012237788999999 89999999 9999999999998 4567799
Q ss_pred EEeeCCCCCC
Q 039453 174 YTGDYNMTPD 183 (202)
Q Consensus 174 ~~gD~~~~~~ 183 (202)
|+||+.+...
T Consensus 136 FtGDtlf~~G 145 (265)
T KOG0813|consen 136 FTGDTLFGAG 145 (265)
T ss_pred EeCCceeecC
Confidence 9999988543
No 37
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.58 E-value=8.4e-15 Score=104.05 Aligned_cols=127 Identities=21% Similarity=0.251 Sum_probs=82.1
Q ss_pred eEEEecCccccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhc
Q 039453 4 DCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEIC 83 (202)
Q Consensus 4 ~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~ 83 (202)
+++++|+ +|++|++++.++|+||...... . .....++|+|++||.|.||+.. +.+.+
T Consensus 1 ~It~lgh------a~~~ie~~g~~iliDP~~~~~~-----------~---~~~~~~~D~IlisH~H~DH~~~-~~l~~-- 57 (163)
T PF13483_consen 1 KITWLGH------ASFLIETGGKRILIDPWFSSVG-----------Y---APPPPKADAILISHSHPDHFDP-ETLKR-- 57 (163)
T ss_dssp EEEEEET------TEEEEEETTEEEEES--TTT-------------T----TSS-B-SEEEESSSSTTT-CC-CCCCC--
T ss_pred CEEEEEe------eEEEEEECCEEEEECCCCCccC-----------c---ccccCCCCEEEECCCccccCCh-hHhhh--
Confidence 5889999 8999999999999999953100 0 0112779999999999999986 22221
Q ss_pred CCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCCc------
Q 039453 84 GYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHV------ 157 (202)
Q Consensus 84 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH~------ 157 (202)
. ..+...+..+++++++ +++++.++..|.
T Consensus 58 ---~-----------------------------------------~~~~~vv~~~~~~~~~-~~~i~~v~~~~~~~~~~~ 92 (163)
T PF13483_consen 58 ---L-----------------------------------------DRDIHVVAPGGEYRFG-GFKITAVPAYHDGPGGHP 92 (163)
T ss_dssp ---H-----------------------------------------HTSSEEE-TTEEEECT-TEEEEEEEEEE-STGTS-
T ss_pred ---c-----------------------------------------ccccEEEccceEEEEe-eeEEEEEeeeccccCCCC
Confidence 1 0356778888899998 899999887663
Q ss_pred -cceEEEEEEECCEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEe
Q 039453 158 -LGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLIT 201 (202)
Q Consensus 158 -~~~~~~~i~~~~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~ 201 (202)
...++|.++.++.++++.||+....+..... .+ .++|++++
T Consensus 93 ~~~~~~~~i~~~g~~i~~~Gd~~~~~~~~~~~-~~--~~vDvl~~ 134 (163)
T PF13483_consen 93 RGENVGYLIEVGGVTIYHAGDTGFPPDDEQLK-QL--GKVDVLFL 134 (163)
T ss_dssp TTCCEEEEEEETTEEEEE-TT--S---HHHHH-HH---S-SEEEE
T ss_pred cCCeEEEEEEeCCCEEEEECCCccCCCHHHHh-cc--cCCCEEEe
Confidence 3378999999999999999999764422211 11 25888875
No 38
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.57 E-value=1.5e-14 Score=113.14 Aligned_cols=136 Identities=16% Similarity=0.188 Sum_probs=104.0
Q ss_pred cccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEe
Q 039453 12 QEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYM 91 (202)
Q Consensus 12 ~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~ 91 (202)
.+.+-|+|||. +++++|||++....+.. .+..+.. -..+++||+|+++|..+||+|+++.+.+..+ ++++++
T Consensus 32 ~GttyNSYLI~-~~k~aLID~~~~~~~~~-----~l~~l~~-~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p-~a~ii~ 103 (388)
T COG0426 32 RGTTYNSYLIV-GDKTALIDTVGEKFFDE-----YLENLSK-YIDPKEIDYIIVNHTEPDHSGSLPELLELAP-NAKIIC 103 (388)
T ss_pred CCceeeeEEEe-CCcEEEECCCCcchHHH-----HHHHHHh-hcChhcCeEEEECCCCcchhhhHHHHHHhCC-CCEEEe
Confidence 34567999999 99999999997653321 1222222 3446889999999999999999999998764 899999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEe--cCCccceEEEEEEECC
Q 039453 92 TYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYY--AGHVLGAAMFYAKVGD 169 (202)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~gH~~~~~~~~i~~~~ 169 (202)
+...+++++...... .....++.|+++.+| |-++++++ --|.|+++..+.. .
T Consensus 104 s~~~~~~L~~~~~~~-----------------------~~~~ivk~Gd~ldlG-g~tL~Fi~ap~LHWPd~m~TYd~--~ 157 (388)
T COG0426 104 SKLAARFLKGFYHDP-----------------------EWFKIVKTGDTLDLG-GHTLKFIPAPFLHWPDTMFTYDP--E 157 (388)
T ss_pred eHHHHHHHHHhcCCc-----------------------cceeecCCCCEeccC-CcEEEEEeCCCCCCCCceeEeec--C
Confidence 999988776633110 115677889999999 88888776 5899999988887 4
Q ss_pred EEEEEEeeCCCC
Q 039453 170 SAMVYTGDYNMT 181 (202)
Q Consensus 170 ~~il~~gD~~~~ 181 (202)
.+|||++|..-.
T Consensus 158 ~kILFS~D~fG~ 169 (388)
T COG0426 158 DKILFSCDAFGA 169 (388)
T ss_pred CcEEEccccccc
Confidence 559999997643
No 39
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.54 E-value=5.1e-14 Score=103.75 Aligned_cols=75 Identities=27% Similarity=0.341 Sum_probs=62.9
Q ss_pred CceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecHHH
Q 039453 16 KSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPT 95 (202)
Q Consensus 16 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~~ 95 (202)
+=|++|+.++.++|+|+|+.... .+..+...+..+++||+++|||.|+||+||++.+.+....+.++|+++..
T Consensus 22 GfS~LVE~~~~riLFDtG~~~~~-------ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~~i~v~ahp~a 94 (259)
T COG1237 22 GFSALVEDEGTRILFDTGTDSDV-------LLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNPGIPVYAHPDA 94 (259)
T ss_pred ceEEEEEcCCeEEEEeCCCCcHH-------HHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCCCceEEeChHH
Confidence 35779999999999999976533 35566667888899999999999999999999998865457899999987
Q ss_pred HH
Q 039453 96 RA 97 (202)
Q Consensus 96 ~~ 97 (202)
.+
T Consensus 95 f~ 96 (259)
T COG1237 95 FK 96 (259)
T ss_pred Hh
Confidence 65
No 40
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=99.52 E-value=4.3e-13 Score=102.19 Aligned_cols=143 Identities=22% Similarity=0.240 Sum_probs=95.3
Q ss_pred ceeEEEecCccccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhh
Q 039453 2 AIDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTE 81 (202)
Q Consensus 2 ~~~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~ 81 (202)
.|+++++|+ +|++|++++.++||||..+........ +. .........+|+|++||.|.||++.-.....
T Consensus 6 ~m~itwlGh------a~~lie~~~~~iliDP~~~~~~~~~~~-~~----~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~ 74 (258)
T COG2220 6 DMKITWLGH------AAFLIETGGKRILIDPVLSGAPSPSNF-PG----GLFEDLLPPIDYILITHDHYDHLDDETLIAL 74 (258)
T ss_pred CceEEEecc------eEEEEEECCEEEEECcccCCCCCcccc-cC----cCChhhcCCCCEEEEeCCCccccCHHHHHHH
Confidence 589999999 899999999999999998754322100 00 1112224679999999999999886544443
Q ss_pred hcCCCCcEEecHHHH-HHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCCcc--
Q 039453 82 ICGYNGPIYMTYPTR-ALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVL-- 158 (202)
Q Consensus 82 ~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH~~-- 158 (202)
... ..+++..+... ..+... + .....+..+..++.++++ ++++++.++-|..
T Consensus 75 ~~~-~~~~~~~p~~~~~~~~~~------------g-----------~~~~~~~~~~~~~~~~~~-~~~i~~~~a~h~~~~ 129 (258)
T COG2220 75 RTN-KAPVVVVPLGAGDLLIRD------------G-----------VEAERVHELGWGDVIELG-DLEITAVPAYHVSAR 129 (258)
T ss_pred hcC-CCcEEEeHHHHHHHHHhc------------C-----------CCcceEEeecCCceEEec-CcEEEEEEeeccccc
Confidence 211 24555544443 221110 0 001246677889999997 7887666654431
Q ss_pred -----------ceEEEEEEECCEEEEEEeeCCC
Q 039453 159 -----------GAAMFYAKVGDSAMVYTGDYNM 180 (202)
Q Consensus 159 -----------~~~~~~i~~~~~~il~~gD~~~ 180 (202)
..++|.++.++.++++.||+.+
T Consensus 130 ~~~~~~~~~~~~~~~~vi~~~g~~iyh~GDt~~ 162 (258)
T COG2220 130 HLPGRGIRPTGLWVGYVIETPGGRVYHAGDTGY 162 (258)
T ss_pred ccCCCCccccCCceEEEEEeCCceEEeccCccH
Confidence 2578999999999999999998
No 41
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.51 E-value=1.5e-15 Score=125.04 Aligned_cols=185 Identities=20% Similarity=0.211 Sum_probs=109.0
Q ss_pred eeEEEecCcccc-----CCceEEEEECCE-EEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCCh
Q 039453 3 IDCLVLGAGQEV-----GKSCVVVTINGK-RIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGAL 76 (202)
Q Consensus 3 ~~~~~lg~~~~~-----~~~~~li~~~~~-~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~ 76 (202)
+++.+||+|.++ +.++++++.+.. .||+|||-+.-.+-.+.|.. .......+++++|+|||.|+||..|+
T Consensus 443 ~eIi~LGTGSaiPskyRNVSS~lv~i~~~~~IlLDCGEgTlgql~R~YG~----~~~~~~lr~LraI~ISHlHADHh~Gl 518 (746)
T KOG2121|consen 443 PEIIFLGTGSAIPSKYRNVSSILVRIDSDDSILLDCGEGTLGQLVRHYGV----ENVDTALRKLRAIFISHLHADHHLGL 518 (746)
T ss_pred cEEEEecCCccCCCcccceEEEEEeccCCccEEeecCCchHHHHHHHhhh----cchHHHHHhHHHHHHHhhcccccccH
Confidence 578999999988 689999998654 59999999875543333321 01112247899999999999999999
Q ss_pred hHhhhhc----C--CCCcEEecHHHHHHHHHHHHHHHHHHHhhcC-CccccchHH-HHHHhhhcEE--ec---CCCeeee
Q 039453 77 PFFTEIC----G--YNGPIYMTYPTRALAPIMLEDYRKVLVDRRG-EVEQFTSDH-IAECMKKVIA--VD---LKQTVQV 143 (202)
Q Consensus 77 ~~l~~~~----~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~--~~---~~~~~~~ 143 (202)
..+.+.. . ..-+++...+. .+.+|.+.+.+... ....+.... ....+..... +. ..+.+..
T Consensus 519 ~~vL~~r~k~~k~~~~~pl~vv~P~------ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~~s~~~~~~~~~l~~ 592 (746)
T KOG2121|consen 519 ISVLQARTKLLKGVENSPLLVVAPR------QLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSPDSVPERLLSYLLRE 592 (746)
T ss_pred HHHHHHHHHhccccccCceEEeChH------HHHHHHHHHhcCcccchhhhhhhcCchhhhhccCccccchhhhhHHHHh
Confidence 8775431 1 12344444332 22333222220000 000000000 0000000000 00 1122222
Q ss_pred CCCeEEEEEecCCccceEEEEEEEC-CEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEeC
Q 039453 144 DKDLQIRAYYAGHVLGAAMFYAKVG-DSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 144 ~~~~~v~~~~~gH~~~~~~~~i~~~-~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~e 202 (202)
.+...+...++-|-+.+.+..+... +.+++|+||+.+++..+.... ++|+||+|
T Consensus 593 ~~l~~i~tc~viHCp~syg~~i~~~~~~Ki~YSGDTrP~~~~v~~g~-----datlLIHE 647 (746)
T KOG2121|consen 593 LGLESIQTCPVIHCPQSYGCSITHGSGWKIVYSGDTRPCEDLVKAGK-----DATLLIHE 647 (746)
T ss_pred cCceeEEecCcEecChhhceeEecccceEEEEcCCCCCchhHhhhcc-----CCceEEee
Confidence 2356777777899998888888764 479999999999777654443 59999998
No 42
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=99.50 E-value=1.2e-12 Score=103.78 Aligned_cols=184 Identities=20% Similarity=0.369 Sum_probs=139.3
Q ss_pred CceEEEEECCEEEEEEeecccccCCCCC---------CCCccccc--------------c------------------cc
Q 039453 16 KSCVVVTINGKRIMFDCGMHMAYNDHRQ---------YPDFSRIS--------------K------------------SC 54 (202)
Q Consensus 16 ~~~~li~~~~~~iLiD~G~~~~~~~~~~---------~~~~~~l~--------------~------------------~~ 54 (202)
-.|.+.+....+||+|||.+...-.+.. +.+...+. + ..
T Consensus 12 ~pc~llk~~~~rIllDcpld~t~~~nFlPlp~~qSpr~~n~p~~~~~~d~~kfq~~elke~~~rvfvesppe~~l~~t~l 91 (653)
T KOG1138|consen 12 YPCKLLKLQRRRILLDCPLDLTAILNFLPLPGVQSPRYSNLPSLDAQNDIQKFQDLELKECCGRVFVESPPEFTLPATHL 91 (653)
T ss_pred CCchheeccceeEEecCCcchhhhhccccCccccCcccccCccccccCccchhhhHHHHHhCCceEEcCCchhccchhhh
Confidence 3788888888999999999875433321 00010000 0 01
Q ss_pred CCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecHHHHHHHHHHHHHHHHHHHh----------------------
Q 039453 55 DFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVD---------------------- 112 (202)
Q Consensus 55 ~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~---------------------- 112 (202)
...+.||+|++|..|- +-|+|++.+..|+.++||++++++++.+-.+++......+
T Consensus 92 ld~stiDvILISNy~~--mlgLPfiTentGF~gkiY~TE~t~qiGrllMEelv~fier~p~~~S~~~Wk~k~~~~~lpsp 169 (653)
T KOG1138|consen 92 LDASTIDVILISNYMG--MLGLPFITENTGFFGKIYATEPTAQIGRLLMEELVSFIERFPKASSAPLWKKKLDSELLPSP 169 (653)
T ss_pred hcccceeEEEEcchhh--hcccceeecCCCceeEEEEechHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhcCCC
Confidence 1237899999999995 8999999999899999999999999876555544433211
Q ss_pred ------hcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCCccceEEEEEEECCEEEEEEeeCCCCCCCCC
Q 039453 113 ------RRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHL 186 (202)
Q Consensus 113 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH~~~~~~~~i~~~~~~il~~gD~~~~~~~~~ 186 (202)
..-|...|+..+......++..+...+.+.+.+-+.++++.+||..|++-|.|.+.++++.|+.+..+......
T Consensus 170 lk~~~~~~~Wr~~ysl~Dv~sclsKVq~v~f~ekidlfga~~vtplsSG~~lGSsnW~I~t~nek~sYvS~Ss~ltth~r 249 (653)
T KOG1138|consen 170 LKKAVFLGSWRRLYSLDDVESCLSKVQGVGFAEKIDLFGALIVTPLSSGYDLGSSNWLINTPNEKLSYVSGSSFLTTHPR 249 (653)
T ss_pred chhhccccceeeeeehhHHHHHHHhheecccceeeeccceEEEEeccccccccccceEEecCCcceEEEecCcccccCCc
Confidence 11244678888888888999999999999997568999999999999999999999999999999999887776
Q ss_pred CCCCCCCCCCCeEEe
Q 039453 187 GAARIDRLQLDLLIT 201 (202)
Q Consensus 187 ~~~~~~~~~~d~li~ 201 (202)
.....+-+..|+||.
T Consensus 250 ~md~a~Lk~~Dvli~ 264 (653)
T KOG1138|consen 250 PMDQAGLKETDVLIY 264 (653)
T ss_pred cccccccccccEEEE
Confidence 555555567899874
No 43
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.46 E-value=7.3e-13 Score=96.75 Aligned_cols=170 Identities=19% Similarity=0.197 Sum_probs=103.6
Q ss_pred ceEEEEECCEEEEEEeecccccCCCCCCCCcccccc---c----cCCCCCcCEEEeccCchhhhCCh-hHhhhh------
Q 039453 17 SCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISK---S----CDFNNAIDCIVITHFHLDHIGAL-PFFTEI------ 82 (202)
Q Consensus 17 ~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~---~----~~~~~~i~~i~lTH~H~DH~~g~-~~l~~~------ 82 (202)
-|.+|++.+-.||||+|.+.........|.-..+.+ . ...-++.+.|.|||.|+||...+ +.+.+.
T Consensus 16 mAt~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e~~~ 95 (304)
T COG2248 16 MATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGETAK 95 (304)
T ss_pred hhheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhcccchH
Confidence 477999999999999999986655444443222221 1 12236789999999999999762 222221
Q ss_pred -cCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEe-cCCccc-
Q 039453 83 -CGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYY-AGHVLG- 159 (202)
Q Consensus 83 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~gH~~~- 159 (202)
+-.+..+++..++..+-+++..+...++.. + ..........+|+++.+| +..+++-+ ..|...
T Consensus 96 eiY~gK~lLlKhPte~IN~SQ~~Ra~~fl~~------------~-~~~~~~ie~ADgk~f~fG-~t~IefS~pvpHG~eG 161 (304)
T COG2248 96 EIYKGKLLLLKHPTENINRSQRRRAYRFLES------------L-KDIAREIEYADGKTFEFG-GTVIEFSPPVPHGREG 161 (304)
T ss_pred HHhcCcEEEecCchhhhCHHHHHHHHHHHHH------------h-hhhcceeEecCCceEEeC-CEEEEecCCCCCCCcc
Confidence 111334556666655533322222222111 1 111234566789999998 89999766 678654
Q ss_pred -----eEEEEEEECCEEEEEEeeCCC-CCCCCCCCCCCCCCCCCeEEeC
Q 039453 160 -----AAMFYAKVGDSAMVYTGDYNM-TPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 160 -----~~~~~i~~~~~~il~~gD~~~-~~~~~~~~~~~~~~~~d~li~e 202 (202)
-+++.++.++.+++|++|+.- -....+. .+-+.++|++|++
T Consensus 162 skLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~--~i~e~~P~v~ii~ 208 (304)
T COG2248 162 SKLGYVLMVAVTDGKSSIVFASDVQGPINDEALE--FILEKRPDVLIIG 208 (304)
T ss_pred cccceEEEEEEecCCeEEEEcccccCCCccHHHH--HHHhcCCCEEEec
Confidence 245667778999999999983 3332221 1223468888863
No 44
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.43 E-value=1e-12 Score=99.07 Aligned_cols=149 Identities=13% Similarity=0.027 Sum_probs=91.8
Q ss_pred eEEEEECCEEEEEE-eecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhc------CCCCcEE
Q 039453 18 CVVVTINGKRIMFD-CGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEIC------GYNGPIY 90 (202)
Q Consensus 18 ~~li~~~~~~iLiD-~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~------~~~~~v~ 90 (202)
+.++-.....+|+| +|.+.... + +.....+++|||||.|.||++|++.+.-.. .....||
T Consensus 11 ~t~~~~~~~~ilfD~ag~g~~~~----------l---~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy 77 (277)
T TIGR02650 11 FSTIIYSPEEIIFDAAEEGSSTL----------G---GKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDF 77 (277)
T ss_pred eEEEEECchhheehhhcccchhH----------H---hhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEE
Confidence 34455678899999 88765331 1 222477999999999999999996554311 0123499
Q ss_pred ecHHHHHHHHH---HHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCC---CeEEEEEecCCcc---ceE
Q 039453 91 MTYPTRALAPI---MLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDK---DLQIRAYYAGHVL---GAA 161 (202)
Q Consensus 91 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~gH~~---~~~ 161 (202)
.++.+....+. .++...... ....+...+..++.+.+.+ ...|++++..|.. .+.
T Consensus 78 ~P~g~~~~ve~~~~~~~~~~~~~----------------~~~~~~~~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~ 141 (277)
T TIGR02650 78 FPKEGNAAEEETSEFIKAANEDL----------------FFFFNHHLEEEDERFFLDAAGFFKRVQPFFRKHHASEESFF 141 (277)
T ss_pred CCcchhHHHHHHHHHHHHhhhhh----------------ccCcccCCCCCCcEEEeecCCccEEEecCccccccCccCcc
Confidence 99887665442 222211110 0011233344455444432 2788888899985 566
Q ss_pred EEEEE--------------------------------ECCEEEEEEeeCCCCCCCCCCCCCCCCCCCCeEEeC
Q 039453 162 MFYAK--------------------------------VGDSAMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 162 ~~~i~--------------------------------~~~~~il~~gD~~~~~~~~~~~~~~~~~~~d~li~e 202 (202)
+|.+- ....+++|+||+.+..... -.++|+||+|
T Consensus 142 GY~~~~~r~KLK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvysGDT~~~~~~~-------a~~adlLIhE 207 (277)
T TIGR02650 142 GHHFEERRKKKEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLIIGDDLAADDEE-------EEGGEELIHE 207 (277)
T ss_pred CeEEEEEeecchHhHcCCCHHHHHHHHHhCCccccccccCcEEEEeCCCCCCChHH-------hcCCCEEEEe
Confidence 66653 1236799999999886411 1269999997
No 45
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.24 E-value=2.4e-11 Score=93.12 Aligned_cols=38 Identities=34% Similarity=0.459 Sum_probs=31.1
Q ss_pred CCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecHHHHH
Q 039453 58 NAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRA 97 (202)
Q Consensus 58 ~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~~~~ 97 (202)
..+++||+||.|+||+.|++.|.+.+ ..+++....+..
T Consensus 61 ~~idai~~TH~H~DHi~Gl~~l~~~~--~~~~~~~~~~~~ 98 (269)
T COG1235 61 SDLDAILLTHEHSDHIQGLDDLRRAY--TLPIYVNPGTLR 98 (269)
T ss_pred cccCeEEEecccHHhhcChHHHHHHh--cCCcccccceec
Confidence 58999999999999999999999975 456666655544
No 46
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=99.16 E-value=6.1e-11 Score=82.19 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=84.4
Q ss_pred CceEEEEE--CCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecH
Q 039453 16 KSCVVVTI--NGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTY 93 (202)
Q Consensus 16 ~~~~li~~--~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~ 93 (202)
+-+|++-. .++.+||||-...... ++..+.+.+ -++.+-+-||.|+||+.|..++...++ +++..++.
T Consensus 21 TytYll~d~~~~~AviIDPV~et~~R------D~qlikdLg---l~LiYa~NTH~HADHiTGtg~Lkt~~p-g~kSVis~ 90 (237)
T KOG0814|consen 21 TYTYLLGDHKTGKAVIIDPVLETVSR------DAQLIKDLG---LDLIYALNTHVHADHITGTGLLKTLLP-GCKSVISS 90 (237)
T ss_pred eEEEEeeeCCCCceEEecchhhcccc------hHHHHHhcC---ceeeeeecceeecccccccchHHHhcc-cHHHHhhh
Confidence 34667754 5789999998765443 232333333 457788999999999999988877642 33322221
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEe-cCCccceEEEEEEECCEEE
Q 039453 94 PTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYY-AGHVLGAAMFYAKVGDSAM 172 (202)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~gH~~~~~~~~i~~~~~~i 172 (202)
... ......+++|+.+.+| ++.+++.. |||++|++.|... +.+.
T Consensus 91 ~SG--------------------------------akAD~~l~~Gd~i~~G-~~~le~ratPGHT~GC~TyV~~--d~~~ 135 (237)
T KOG0814|consen 91 ASG--------------------------------AKADLHLEDGDIIEIG-GLKLEVRATPGHTNGCVTYVEH--DLRM 135 (237)
T ss_pred ccc--------------------------------cccccccCCCCEEEEc-cEEEEEecCCCCCCceEEEEec--Ccce
Confidence 110 0123357889999999 89999877 9999999999998 5569
Q ss_pred EEEeeCCC
Q 039453 173 VYTGDYNM 180 (202)
Q Consensus 173 l~~gD~~~ 180 (202)
.|+||+..
T Consensus 136 aFTGDalL 143 (237)
T KOG0814|consen 136 AFTGDALL 143 (237)
T ss_pred eeecceeE
Confidence 99999875
No 47
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=98.97 E-value=4.2e-09 Score=82.10 Aligned_cols=174 Identities=16% Similarity=0.168 Sum_probs=98.5
Q ss_pred eeEEEecCcccc---CCceEEEEE--CCEEEEEEeecccccCCC----C--------CCC-----CccccccccCCCCCc
Q 039453 3 IDCLVLGAGQEV---GKSCVVVTI--NGKRIMFDCGMHMAYNDH----R--------QYP-----DFSRISKSCDFNNAI 60 (202)
Q Consensus 3 ~~~~~lg~~~~~---~~~~~li~~--~~~~iLiD~G~~~~~~~~----~--------~~~-----~~~~l~~~~~~~~~i 60 (202)
+.++.||.++++ +.+++|++. .+..+-+|+|.-...-.. . ..| ......+.....+.|
T Consensus 1 f~vi~LG~~GG~~e~nls~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I 80 (335)
T PF02112_consen 1 FQVIVLGSGGGPDEGNLSAYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHI 80 (335)
T ss_pred CeEeecCCCCCCCCCCcceeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhh
Confidence 356777777666 688999985 467899999976543110 0 001 000111112223679
Q ss_pred CEEEeccCchhhhCChhHhhhhcC----CCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHH--HHhhhcEE
Q 039453 61 DCIVITHFHLDHIGALPFFTEICG----YNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIA--ECMKKVIA 134 (202)
Q Consensus 61 ~~i~lTH~H~DH~~g~~~l~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 134 (202)
...+|||+|.||+.|+-.-..... ...+||+.+.+.+.++.- +.+...|. -++..... ....+...
T Consensus 81 ~~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~h-------iFN~~iWP-Nl~~~~~~~~~~~~~~~~ 152 (335)
T PF02112_consen 81 KGYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNH-------IFNDIIWP-NLSDEGEGDYLYKYRYFD 152 (335)
T ss_pred heEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHc-------ccCCccCC-CCCCcCcccceeeeeeee
Confidence 999999999999999853322221 256799999987754431 11122121 11111000 00012222
Q ss_pred ecCCCeeeeC------------CCeEEEEEecCCccc------eEEEEEEECC--EEEEEEeeCCCCCCC
Q 039453 135 VDLKQTVQVD------------KDLQIRAYYAGHVLG------AAMFYAKVGD--SAMVYTGDYNMTPDR 184 (202)
Q Consensus 135 ~~~~~~~~~~------------~~~~v~~~~~gH~~~------~~~~~i~~~~--~~il~~gD~~~~~~~ 184 (202)
+..++...+. ....+++++..|... +.+|.++... +.++|.||++.....
T Consensus 153 l~~~~~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s 222 (335)
T PF02112_consen 153 LSPGELIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVS 222 (335)
T ss_pred ccccceeeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccc
Confidence 3333222221 135567788888654 6889998764 899999999987643
No 48
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=98.83 E-value=2.9e-09 Score=74.54 Aligned_cols=124 Identities=16% Similarity=0.132 Sum_probs=75.6
Q ss_pred cccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEe
Q 039453 12 QEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYM 91 (202)
Q Consensus 12 ~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~ 91 (202)
...+-||++...++.+|||||.+-..- ....+.+ ...+++|+|||. ||+-.....++.+ +++||+
T Consensus 19 ~n~dfng~~~~~p~GnilIDP~~ls~~-------~~~~l~a----~ggv~~IvLTn~--dHvR~A~~ya~~~--~a~i~~ 83 (199)
T PF14597_consen 19 RNLDFNGHAWRRPEGNILIDPPPLSAH-------DWKHLDA----LGGVAWIVLTNR--DHVRAAEDYAEQT--GAKIYG 83 (199)
T ss_dssp TTEEEEEEEE--TT--EEES-----HH-------HHHHHHH----TT--SEEE-SSG--GG-TTHHHHHHHS----EEEE
T ss_pred hccCceeEEEEcCCCCEEecCccccHH-------HHHHHHh----cCCceEEEEeCC--hhHhHHHHHHHHh--CCeeec
Confidence 344568999999999999999864211 1223332 366999999975 6999999999985 799999
Q ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCCccceEEEEEEECCEE
Q 039453 92 TYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSA 171 (202)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH~~~~~~~~i~~~~~~ 171 (202)
+...++..+ ......+.+|+++. +|+.+..++..|++|.+.+.++ ++
T Consensus 84 p~~d~~~~p----------------------------~~~D~~l~dge~i~--~g~~vi~l~G~ktpGE~ALlle---d~ 130 (199)
T PF14597_consen 84 PAADAAQFP----------------------------LACDRWLADGEEIV--PGLWVIHLPGSKTPGELALLLE---DR 130 (199)
T ss_dssp EGGGCCC-S----------------------------S--SEEE-TT-BSS--TTEEEEEE-SSSSTTEEEEEET---TT
T ss_pred cHHHHhhCC----------------------------CCCccccccCCCcc--CceEEEEcCCCCCCceeEEEec---cc
Confidence 988754211 12445677777443 4788887755599999999997 36
Q ss_pred EEEEeeCCCCCC
Q 039453 172 MVYTGDYNMTPD 183 (202)
Q Consensus 172 il~~gD~~~~~~ 183 (202)
++++||+.....
T Consensus 131 vLi~GDl~~~~~ 142 (199)
T PF14597_consen 131 VLITGDLLRSHP 142 (199)
T ss_dssp EEEESSSEEBSS
T ss_pred eEEecceeeecC
Confidence 999999877554
No 49
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=98.78 E-value=1.7e-08 Score=81.34 Aligned_cols=118 Identities=25% Similarity=0.373 Sum_probs=86.9
Q ss_pred CCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecC
Q 039453 58 NAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDL 137 (202)
Q Consensus 58 ~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (202)
....+-++||.|.||..|+..-.. +.++|+++.+++.....+.-. ...+..++.
T Consensus 111 ~~~s~yFLsHFHSDHy~GL~~sW~----~p~lYCS~ita~Lv~~~~~v~----------------------~~~i~~l~l 164 (481)
T KOG1361|consen 111 EGCSAYFLSHFHSDHYIGLTKSWS----HPPLYCSPITARLVPLKVSVT----------------------KQSIQALDL 164 (481)
T ss_pred cccceeeeeccccccccccccccc----CCcccccccchhhhhhhcccC----------------------hhhceeecC
Confidence 467889999999999888754332 345999999998776644311 134667888
Q ss_pred CCeeeeCCCeEEEEEecCCccceEEEEEEECCE-EEEEEeeCCCCCCCCCCCCCCCCCCCCeEEeC
Q 039453 138 KQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDS-AMVYTGDYNMTPDRHLGAARIDRLQLDLLITE 202 (202)
Q Consensus 138 ~~~~~~~~~~~v~~~~~gH~~~~~~~~i~~~~~-~il~~gD~~~~~~~~~~~~~~~~~~~d~li~e 202 (202)
++.+.+. ++.+.++.+.|-+|++++.++.... ++|++||..+...............+|.+..|
T Consensus 165 ~~~~~i~-~~~vt~ldAnHCPGa~mf~F~~~~~~~~lhtGDFR~s~~m~~~p~~~~~~~i~~lyLD 229 (481)
T KOG1361|consen 165 NQPLEIP-GIQVTLLDANHCPGAVMFLFELSFGPCILHTGDFRASADMSKEPALTLEQTIDILYLD 229 (481)
T ss_pred CCceeec-ceEEEEeccccCCCceEEEeecCCCceEEecCCcccChhhhhChHHhcCCccceEEEe
Confidence 8999997 7999999999999999999987554 99999999998875431111112346665543
No 50
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.36 E-value=1.3e-06 Score=65.85 Aligned_cols=123 Identities=19% Similarity=0.233 Sum_probs=85.8
Q ss_pred CceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecHHH
Q 039453 16 KSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYPT 95 (202)
Q Consensus 16 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~~ 95 (202)
+...++..++..+++|+|.+ .+.+.+...++|+.+++||.+.+|.+.+..+..+ +++.....
T Consensus 95 ~~~tl~~d~~~v~v~~~gls-------------~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~~s-----p~l~~s~e 156 (302)
T KOG4736|consen 95 GQITLVVDGGDVVVVDTGLS-------------VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFPQS-----PILYHSME 156 (302)
T ss_pred cccceeecCCceEEEecCCc-------------hhhhcCcChhhcceeEEeccCcccccccccccCC-----HHHhhhhh
Confidence 45667788899999999986 3666677789999999999999999998776542 22111111
Q ss_pred HHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeeeCCCeEEEEEecCCccceEEEEEEE--CCEEEE
Q 039453 96 RALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKV--GDSAMV 173 (202)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~gH~~~~~~~~i~~--~~~~il 173 (202)
.. .+. ..-..++.+..++++++..+. -.+||+..++...+.. ..+++.
T Consensus 157 ~~--------------gr~---------------~~pt~l~e~~~~~l~~~~~V~-~TpGht~~~isvlv~n~~~~GTv~ 206 (302)
T KOG4736|consen 157 YI--------------GRH---------------VTPTELDERPYLKLSPNVEVW-KTPGHTQHDISVLVHNVDLYGTVA 206 (302)
T ss_pred hc--------------CCc---------------cChhhhccCCccccCCceeEe-eCCCCCCcceEEEEEeecccceEE
Confidence 00 000 011234556778887666666 4599999888877765 457999
Q ss_pred EEeeCCCCCCCCC
Q 039453 174 YTGDYNMTPDRHL 186 (202)
Q Consensus 174 ~~gD~~~~~~~~~ 186 (202)
++||+.+..+.+.
T Consensus 207 itGDLf~~~~dld 219 (302)
T KOG4736|consen 207 ITGDLFPREEDLD 219 (302)
T ss_pred EEeecccCCcccc
Confidence 9999998876553
No 51
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=98.14 E-value=8.7e-06 Score=60.89 Aligned_cols=117 Identities=19% Similarity=0.137 Sum_probs=70.3
Q ss_pred CCcCEEEeccCchhhhCChhHhhhhcC--CCCcEEecHHHHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEe
Q 039453 58 NAIDCIVITHFHLDHIGALPFFTEICG--YNGPIYMTYPTRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAV 135 (202)
Q Consensus 58 ~~i~~i~lTH~H~DH~~g~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (202)
+.|+.-+|||+|.||+.|+-.-...+. -...||+.+-+...++. +..+. .-| +.+... .....+...+
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~~~qkkkTI~gl~~tIDvL~k----hvFN~---lvW-P~lt~~--gs~~~~~qvv 180 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDDSKQKKKTIYGLADTIDVLRK----HVFNW---LVW-PNLTDS--GSGTYRMQVV 180 (356)
T ss_pred hhhhheEeccccccchhceeecCccccccCCceEEechhHHHHHHH----Hhhcc---ccc-CCcccc--cCceEEEEEe
Confidence 679999999999999998733221111 13468888877654433 22221 111 111111 0112345556
Q ss_pred cCCCeeeeCC-CeEEEEEecCCcc------ceEEEEEEEC--CEEEEEEeeCCCCCCC
Q 039453 136 DLKQTVQVDK-DLQIRAYYAGHVL------GAAMFYAKVG--DSAMVYTGDYNMTPDR 184 (202)
Q Consensus 136 ~~~~~~~~~~-~~~v~~~~~gH~~------~~~~~~i~~~--~~~il~~gD~~~~~~~ 184 (202)
++.+...+.- .+++++++..|.. -+.++.+..+ ++.++++||+.+....
T Consensus 181 ~P~~~~slt~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~ve 238 (356)
T COG5212 181 RPAQSLSLTLTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDDVE 238 (356)
T ss_pred ChhHeeeeeeeeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCcchhh
Confidence 6665544431 3678888888864 2467778776 6789999999987643
No 52
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.08 E-value=8.7e-06 Score=60.27 Aligned_cols=152 Identities=16% Similarity=0.141 Sum_probs=86.1
Q ss_pred CceEEEEECCEEEEEEeecccccCCCCCCC-CccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecHH
Q 039453 16 KSCVVVTINGKRIMFDCGMHMAYNDHRQYP-DFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTYP 94 (202)
Q Consensus 16 ~~~~li~~~~~~iLiD~G~~~~~~~~~~~~-~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~~ 94 (202)
.+|.++..++-.+|-|+-+.....-....| .+.........+.+++-++.||.|+||...-.. .+....+.++...+.
T Consensus 88 ~a~~~~~~~g~~~~tdpvf~d~~if~s~gPkry~~pp~~~~~~p~~d~~~vsh~h~dhld~~~~-~~~~~~~~~~wfvp~ 166 (343)
T KOG3798|consen 88 HATVLVDLEGVKFVTDPVWADRASFTSFGPKRYRPPPMKLEDLPDLDFAVVSHDHYDHLDADAV-KKITDRNPQIWFVPL 166 (343)
T ss_pred ceeEEEeccCcEEecchhhccchhhcccCcccccCCchhhccCCCCceeccccccccccchHHH-HhhhccCccceeehh
Confidence 388899899999999987765332111111 111122223345789999999999999865433 332222333332222
Q ss_pred -HHHHHHHHHHHHHHHHHhhcCCccccchHHHHHHhhhcEEecCCCeeee---CCCeEEEEEecCCccce----------
Q 039453 95 -TRALAPIMLEDYRKVLVDRRGEVEQFTSDHIAECMKKVIAVDLKQTVQV---DKDLQIRAYYAGHVLGA---------- 160 (202)
Q Consensus 95 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~gH~~~~---------- 160 (202)
..+.+.. .. -....++..+.+.++ ++-+++.+.|+-|..+.
T Consensus 167 g~k~~m~~----------~g---------------c~~v~el~wwe~~~~vkn~~~~ti~~tPaqHw~~R~L~D~Nk~LW 221 (343)
T KOG3798|consen 167 GMKKWMEG----------DG---------------SSTVTELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLFDRNKRLW 221 (343)
T ss_pred hhhheecC----------CC---------------CCceeEeeccchhceecCCcEEEEEEcchhhhcccccccCCccee
Confidence 2111111 00 113445555544444 23367778888775431
Q ss_pred EEEEEEECCEEEEEEeeCCCCCC-CCCCCCCCCC
Q 039453 161 AMFYAKVGDSAMVYTGDYNMTPD-RHLGAARIDR 193 (202)
Q Consensus 161 ~~~~i~~~~~~il~~gD~~~~~~-~~~~~~~~~~ 193 (202)
++|.+--.+.+++|+||++|++. ...+.+++.+
T Consensus 222 ~sw~v~g~~nrfffaGDTGyc~~~F~~IgerfGp 255 (343)
T KOG3798|consen 222 SSWAVIGENNRFFFAGDTGYCDGEFKKIGERFGP 255 (343)
T ss_pred eeeEEecCCceEEecCCCCcccHHHHHHHHhcCC
Confidence 46666666779999999999994 3345555544
No 53
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=97.68 E-value=0.00011 Score=43.05 Aligned_cols=49 Identities=16% Similarity=0.354 Sum_probs=41.0
Q ss_pred ceEEEEECCEEEEE-EeecccccCCCCCCCCccccccccCCCCCcCEEEeccCc-hhhhCC
Q 039453 17 SCVVVTINGKRIMF-DCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFH-LDHIGA 75 (202)
Q Consensus 17 ~~~li~~~~~~iLi-D~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H-~DH~~g 75 (202)
+|+++.++.+++|| +||-+... .+.+.+....+++.||+|+.. ++++||
T Consensus 13 p~l~l~~d~~rYlFGn~gEGtQR----------~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFFDSRRYLFGNCGEGTQR----------ACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEeCCceEEeccCCcHHHH----------HHHHcCCCccccceEEECCCCcccccCC
Confidence 89999999999999 99987633 244456667999999999999 999886
No 54
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.41 E-value=6.1e-05 Score=60.79 Aligned_cols=73 Identities=14% Similarity=0.056 Sum_probs=47.7
Q ss_pred ceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhc---CCCCcEEecH
Q 039453 17 SCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEIC---GYNGPIYMTY 93 (202)
Q Consensus 17 ~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~---~~~~~v~~~~ 93 (202)
|..+|+.+...|+|||=....... ..-.+-......+.|.+|+.||+|.||+||..-+.+.. ...++|+++.
T Consensus 127 NITfveGdtg~IViDpL~t~~tA~-----aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~ 201 (655)
T COG2015 127 NITFVEGDTGWIVIDPLVTPETAK-----AALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPA 201 (655)
T ss_pred ceEEEcCCcceEEEcccCCcHHHH-----HHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecch
Confidence 677888889999999876542211 00011111222478999999999999999997765432 1246777774
Q ss_pred H
Q 039453 94 P 94 (202)
Q Consensus 94 ~ 94 (202)
.
T Consensus 202 G 202 (655)
T COG2015 202 G 202 (655)
T ss_pred h
Confidence 3
No 55
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=95.09 E-value=0.015 Score=49.59 Aligned_cols=65 Identities=17% Similarity=0.391 Sum_probs=44.7
Q ss_pred EEEecCccccCCceEEEEECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhh
Q 039453 5 CLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEI 82 (202)
Q Consensus 5 ~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~ 82 (202)
+.++++|.+ .+.|...+|-+||++.|..-... +=.+ -.+.++||.|+|||.-.|-.+|+..+.+.
T Consensus 40 cYIfpGg~g---daALFavnGf~iLv~GgserKS~-------fwkl---VrHldrVdaVLLthpg~dNLpginsllqr 104 (934)
T KOG3592|consen 40 CYIFPGGRG---DAALFAVNGFNILVNGGSERKSC-------FWKL---VRHLDRVDAVLLTHPGADNLPGINSLLQR 104 (934)
T ss_pred EEECCCCCC---cceeEeecceEEeecCCcccccc-------hHHH---HHHHhhhhhhhhcccccCccccchHHHHH
Confidence 345666544 66677889999999977642111 1111 12348899999999999999999777543
No 56
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=94.74 E-value=0.24 Score=41.33 Aligned_cols=104 Identities=16% Similarity=0.173 Sum_probs=64.3
Q ss_pred eeEEEecCccccCCceEEEEECCEEEEEEeecccccCCCC----CCCCccccccccCCCCCcCEEEeccCchhhhCChhH
Q 039453 3 IDCLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMAYNDHR----QYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPF 78 (202)
Q Consensus 3 ~~~~~lg~~~~~~~~~~li~~~~~~iLiD~G~~~~~~~~~----~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~ 78 (202)
||++.++.|...|..-++++. .+..|+++|.-.+..+.- ..|.... ...-....-++.++|.|.||-+.+.+
T Consensus 151 Ikf~p~~aGhVlgacMf~vei-agv~lLyTGd~sreeDrhl~aae~P~~~~---dvli~estygv~~h~~r~~re~rlt~ 226 (668)
T KOG1137|consen 151 IKFWPYHAGHVLGACMFMVEI-AGVRLLYTGDYSREEDRHLIAAEMPPTGP---DVLITESTYGVQIHEPREEREGRLTW 226 (668)
T ss_pred eEEEeeccchhhhheeeeeee-ceEEEEeccccchhhcccccchhCCCCCc---cEEEEEeeeeEEecCchHHhhhhhhh
Confidence 677888855544544455555 566778899876554321 1111110 01112557789999999999999999
Q ss_pred hhhhcCCC-----CcEEecHHHHHHHHHHHHHHHHHHH
Q 039453 79 FTEICGYN-----GPIYMTYPTRALAPIMLEDYRKVLV 111 (202)
Q Consensus 79 l~~~~~~~-----~~v~~~~~~~~~~~~~~~~~~~~~~ 111 (202)
+....-.+ .|+++...+.+++- .+.+||.+..
T Consensus 227 vIh~~v~rGGR~L~PvFAlgrAqELll-ildeyw~~h~ 263 (668)
T KOG1137|consen 227 VIHSTVPRGGRVLIPVFALGRAQELLL-ILDEYWGNHV 263 (668)
T ss_pred hHHhhccCCCceEeeeeecchHHHHHH-HHHHHhhcch
Confidence 98765334 47888888776543 3455555543
No 57
>PF00797 Acetyltransf_2: N-acetyltransferase; InterPro: IPR001447 Arylamine N-acetyltransferase (NAT) is a cytosolic enzyme of approximately 30 kDa. It facilitates the transfer of an acetyl group from acetyl coenzyme A on to a wide range of arylamine, N-hydroxyarylamines and hydrazines. Acetylation of these compounds generally results in inactivation. NAT is found in many species from Mycobacteria (Mycobacterium tuberculosis, Mycobacterium smegmatis etc) to Homo sapiens (Human). It was the first enzyme to be observed to have polymorphic activity amongst human individuals. NAT is responsible for the inactivation of Isoniazid (a drug used to treat tuberculosis) in humans. The NAT protein has also been shown to be involved in the breakdown of folic acid. NAT catalyses the reaction: Acetyl-coA + arylamine = coA + N-acetylarylamine NAT is the target of a common genetic polymorphism of clinical relevance in humans. The N-acetylation polymorphism is determined by low or high NAT activity in liver. NAT has been implicated in the action and toxicity of amine-containing drugs, and in the susceptibility to cancer and systematic lupus erythematosus. Two highly similar human genes for NAT, termed NAT1 and NAT2, encode genetically invariant and variant NAT proteins, respectively. ; GO: 0016407 acetyltransferase activity, 0008152 metabolic process; PDB: 1W6F_A 1W5R_A 1GX3_D 2PQT_A 2IJA_A 1W4T_A 2BSZ_B 3D9W_B 3LTW_A 3LNB_A ....
Probab=38.65 E-value=36 Score=25.47 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=17.1
Q ss_pred ceEEEEECCEEEEEEeecccc
Q 039453 17 SCVVVTINGKRIMFDCGMHMA 37 (202)
Q Consensus 17 ~~~li~~~~~~iLiD~G~~~~ 37 (202)
-+.+|..+++.+|+|.|.+..
T Consensus 89 ~~liV~~~~~~ylvDvGfG~~ 109 (240)
T PF00797_consen 89 LVLIVTLDGERYLVDVGFGGP 109 (240)
T ss_dssp EEEEEEETTEEEEE-SSSTTC
T ss_pred EEEEEEECCEEEEEeccCCCc
Confidence 466778899999999999985
No 58
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=34.75 E-value=23 Score=26.52 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=16.4
Q ss_pred cCchhhhCChhHhhhhcCCCC-cEEec
Q 039453 67 HFHLDHIGALPFFTEICGYNG-PIYMT 92 (202)
Q Consensus 67 H~H~DH~~g~~~l~~~~~~~~-~v~~~ 92 (202)
|+|.||..++-.++... ++ +||.+
T Consensus 42 HSh~~Hl~al~~~a~~~--gv~~V~vH 66 (223)
T PF06415_consen 42 HSHIDHLFALIKLAKKQ--GVKKVYVH 66 (223)
T ss_dssp S--HHHHHHHHHHHHHT--T-SEEEEE
T ss_pred cccHHHHHHHHHHHHHc--CCCEEEEE
Confidence 99999999998887764 44 47766
No 59
>COG2052 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.10 E-value=82 Score=19.13 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=12.3
Q ss_pred CceeEEEecCccccCCc
Q 039453 1 MAIDCLVLGAGQEVGKS 17 (202)
Q Consensus 1 m~~~~~~lg~~~~~~~~ 17 (202)
|.++++-.|-|.-+++|
T Consensus 1 m~i~LINIGFGNivsan 17 (89)
T COG2052 1 MEIKLINIGFGNIVSAN 17 (89)
T ss_pred CceEEEEeccccEeecc
Confidence 78888888887655443
No 60
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=29.96 E-value=12 Score=32.83 Aligned_cols=49 Identities=22% Similarity=0.326 Sum_probs=35.8
Q ss_pred EECCEEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhh
Q 039453 22 TINGKRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFT 80 (202)
Q Consensus 22 ~~~~~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~ 80 (202)
-.+.+..++.||.++.. .+.+.+....+++.||+|=.+++-|||++.+.
T Consensus 70 ~~~~~~~~~n~Geg~qr----------~~~ehk~~~sk~~~iflt~~~w~~~GglpGl~ 118 (746)
T KOG2121|consen 70 FDDRKRFIFNCGEGTQR----------LLTEHKIKLSKLDSIFLTRVCWSSCGGLPGLL 118 (746)
T ss_pred hcchhhhhhhhhHHHHH----------HHHHhhhhhhhhhheEeecccHHHhCCCccce
Confidence 34567777777776421 23334555688999999999999999998774
No 61
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=27.41 E-value=72 Score=24.93 Aligned_cols=74 Identities=9% Similarity=-0.003 Sum_probs=46.1
Q ss_pred CCceEEEEECC-EEEEEEeecccccCCCCCCCCccccccccCCCCCcCEEEeccCchhhhCChhHhhhhcCCCCcEEecH
Q 039453 15 GKSCVVVTING-KRIMFDCGMHMAYNDHRQYPDFSRISKSCDFNNAIDCIVITHFHLDHIGALPFFTEICGYNGPIYMTY 93 (202)
Q Consensus 15 ~~~~~li~~~~-~~iLiD~G~~~~~~~~~~~~~~~~l~~~~~~~~~i~~i~lTH~H~DH~~g~~~l~~~~~~~~~v~~~~ 93 (202)
++.+.+|+..+ ..++..|-.-. .. ....+.+....-..|++|++-....-|-.-+..+.++++ ++++|+.+
T Consensus 19 ~~RMTVVrL~~G~L~VhSPvapT-~e------l~~~l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~~afP-~A~v~~~P 90 (285)
T PF14234_consen 19 PTRMTVVRLSDGGLWVHSPVAPT-PE------LKAELDELEAQHGPVKYIVAPNKGLEHHLFLGPWARAFP-DAKVWAPP 90 (285)
T ss_pred cceEEEEEECCCCEEEECCCCCC-HH------HHHHHHHHhccCCceeEEEcCCcchhHHHhHHHHHHHCC-CCEEEeCC
Confidence 44677787654 45555444321 11 112222221122779999998776678888899999884 89999987
Q ss_pred HHH
Q 039453 94 PTR 96 (202)
Q Consensus 94 ~~~ 96 (202)
...
T Consensus 91 g~~ 93 (285)
T PF14234_consen 91 GQW 93 (285)
T ss_pred Ccc
Confidence 743
No 62
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=26.53 E-value=91 Score=20.67 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=17.3
Q ss_pred CceEEEEECCEEEEEEeeccc
Q 039453 16 KSCVVVTINGKRIMFDCGMHM 36 (202)
Q Consensus 16 ~~~~li~~~~~~iLiD~G~~~ 36 (202)
-++++.-.+++.+++|.|.+.
T Consensus 69 mPtfvffkngkh~~~d~gt~~ 89 (114)
T cd02986 69 IPSTIFFFNGQHMKVDYGSPD 89 (114)
T ss_pred CcEEEEEECCcEEEEecCCCC
Confidence 367777779999999999874
No 63
>PRK15047 N-hydroxyarylamine O-acetyltransferase; Provisional
Probab=23.77 E-value=94 Score=24.22 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=17.8
Q ss_pred CceEEEEECCEEEEEEeecccc
Q 039453 16 KSCVVVTINGKRIMFDCGMHMA 37 (202)
Q Consensus 16 ~~~~li~~~~~~iLiD~G~~~~ 37 (202)
--..+|..+++..|+|.|++..
T Consensus 107 H~~l~V~i~~~~yLvDVGFG~~ 128 (281)
T PRK15047 107 HRLLLVELEGEKWIADVGFGGQ 128 (281)
T ss_pred cEEEEEEECCeeEEEEecCCCC
Confidence 3456778899999999999963
No 64
>PF07940 Hepar_II_III: Heparinase II/III-like protein; InterPro: IPR012480 This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II (Q46080 from SWISSPROT) and heparinase III (Q59289 from SWISSPROT). The former is known to degrade heparin and heparan sulphate, whereas the latter predominantly degrades heparan sulphate. Both are secreted into the periplasmic space upon induction with heparin []. ; PDB: 3AFL_A 3A0O_A 3E80_B 2FUT_A 3E7J_B 2FUQ_A.
Probab=22.78 E-value=1.1e+02 Score=20.30 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=14.7
Q ss_pred CCceEEEEECCEEEEEEeeccc
Q 039453 15 GKSCVVVTINGKRIMFDCGMHM 36 (202)
Q Consensus 15 ~~~~~li~~~~~~iLiD~G~~~ 36 (202)
...++.+..++..+++|+|...
T Consensus 30 D~lsf~l~~~G~~l~~D~G~~~ 51 (139)
T PF07940_consen 30 DQLSFELYANGERLLVDPGYYS 51 (139)
T ss_dssp -TTEEEEEETTEEEE---S-SS
T ss_pred CCCcEEEEECCeEEEEcCCCCc
Confidence 3578888999999999999864
Done!