BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 039454
         (214 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VL2|A Chain A, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
 pdb|2VL2|B Chain B, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
          Length = 172

 Score = 28.5 bits (62), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 4   WGTVEMADAEKRLLANALLDFSNERFVLLSESCIPIYN 41
           WG    A+ + RLLA+    F  E  +LL +S + I+ 
Sbjct: 95  WGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFG 132


>pdb|1URM|A Chain A, Human Peroxiredoxin 5, C47s Mutant
          Length = 172

 Score = 28.5 bits (62), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 4   WGTVEMADAEKRLLANALLDFSNERFVLLSESCIPIYN 41
           WG    A+ + RLLA+    F  E  +LL +S + I+ 
Sbjct: 95  WGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFG 132


>pdb|2VL9|A Chain A, Oxidized Form Of Human Peroxiredoxin 5
 pdb|2VL9|B Chain B, Oxidized Form Of Human Peroxiredoxin 5
 pdb|2VL9|C Chain C, Oxidized Form Of Human Peroxiredoxin 5
 pdb|2VL9|D Chain D, Oxidized Form Of Human Peroxiredoxin 5
          Length = 173

 Score = 28.5 bits (62), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 4   WGTVEMADAEKRLLANALLDFSNERFVLLSESCIPIYN 41
           WG    A+ + RLLA+    F  E  +LL +S + I+ 
Sbjct: 96  WGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFG 133


>pdb|3MNG|A Chain A, Wild Type Human Prxv With Dtt Bound As A Competitive
           Inhibitor
          Length = 173

 Score = 28.5 bits (62), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 4   WGTVEMADAEKRLLANALLDFSNERFVLLSESCIPIYN 41
           WG    A+ + RLLA+    F  E  +LL +S + I+ 
Sbjct: 96  WGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFG 133


>pdb|1OC3|A Chain A, Human Peroxiredoxin 5
 pdb|1OC3|B Chain B, Human Peroxiredoxin 5
 pdb|1OC3|C Chain C, Human Peroxiredoxin 5
 pdb|2VL2|C Chain C, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
 pdb|2VL3|A Chain A, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
 pdb|2VL3|B Chain B, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
 pdb|2VL3|C Chain C, Oxidized And Reduced Forms Of Human Peroxiredoxin 5
          Length = 172

 Score = 28.5 bits (62), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 4   WGTVEMADAEKRLLANALLDFSNERFVLLSESCIPIYN 41
           WG    A+ + RLLA+    F  E  +LL +S + I+ 
Sbjct: 95  WGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFG 132


>pdb|1HD2|A Chain A, Human Peroxiredoxin 5
 pdb|1H4O|A Chain A, Monoclinic Form Of Human Peroxiredoxin 5
 pdb|1H4O|B Chain B, Monoclinic Form Of Human Peroxiredoxin 5
 pdb|1H4O|C Chain C, Monoclinic Form Of Human Peroxiredoxin 5
 pdb|1H4O|D Chain D, Monoclinic Form Of Human Peroxiredoxin 5
 pdb|1H4O|E Chain E, Monoclinic Form Of Human Peroxiredoxin 5
 pdb|1H4O|F Chain F, Monoclinic Form Of Human Peroxiredoxin 5
 pdb|1H4O|G Chain G, Monoclinic Form Of Human Peroxiredoxin 5
 pdb|1H4O|H Chain H, Monoclinic Form Of Human Peroxiredoxin 5
          Length = 161

 Score = 28.5 bits (62), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 20/38 (52%)

Query: 4   WGTVEMADAEKRLLANALLDFSNERFVLLSESCIPIYN 41
           WG    A+ + RLLA+    F  E  +LL +S + I+ 
Sbjct: 84  WGRAHKAEGKVRLLADPTGAFGKETDLLLDDSLVSIFG 121


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,684,847
Number of Sequences: 62578
Number of extensions: 278096
Number of successful extensions: 575
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 569
Number of HSP's gapped (non-prelim): 7
length of query: 214
length of database: 14,973,337
effective HSP length: 95
effective length of query: 119
effective length of database: 9,028,427
effective search space: 1074382813
effective search space used: 1074382813
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)