Query 039454
Match_columns 214
No_of_seqs 118 out of 723
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 09:48:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03183 acetylglucosaminyltra 100.0 2E-46 4.4E-51 334.9 15.8 191 1-212 148-364 (421)
2 PF02485 Branch: Core-2/I-Bran 100.0 4.6E-44 9.9E-49 301.0 8.0 172 1-172 63-244 (244)
3 KOG0799 Branching enzyme [Carb 99.9 6.3E-28 1.4E-32 218.3 9.8 193 1-208 166-385 (439)
4 COG4746 Uncharacterized protei 51.4 9.8 0.00021 26.3 1.4 22 30-51 55-76 (80)
5 TIGR03853 matur_matur probable 46.7 40 0.00087 23.4 3.9 32 24-59 32-63 (77)
6 PF07747 MTH865: MTH865-like f 46.7 8.8 0.00019 26.5 0.7 19 32-50 11-29 (75)
7 PF04122 CW_binding_2: Putativ 32.6 77 0.0017 21.9 3.8 36 3-38 2-37 (92)
8 PF10678 DUF2492: Protein of u 30.6 93 0.002 21.6 3.7 32 24-59 34-65 (78)
9 PF12610 SOCS: Suppressor of c 26.6 21 0.00046 23.6 -0.0 10 34-43 48-57 (60)
10 cd06167 LabA_like LabA_like pr 22.9 1.2E+02 0.0026 22.6 3.6 43 12-59 87-129 (149)
11 TIGR00288 conserved hypothetic 22.4 1.1E+02 0.0024 24.2 3.3 46 10-60 91-136 (160)
No 1
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=100.00 E-value=2e-46 Score=334.88 Aligned_cols=191 Identities=20% Similarity=0.253 Sum_probs=150.3
Q ss_pred CccccchhHHHHHHHHHHHHhhC-CCCCEEEEecCCCccCCCcHH-HHHHHh-CCCCccEEeecCCCCcccccccc----
Q 039454 1 NVGWGTVEMADAEKRLLANALLD-FSNERFVLLSESCIPIYNFPT-VYKYLT-GSPYSFVESYDDPSRYGRGRYSR---- 73 (214)
Q Consensus 1 ~v~WG~~S~v~A~l~l~~~al~~-~~~~~fillSg~D~PL~s~~~-i~~~l~-~~~~~fi~~~~~~~~~~~~r~~~---- 73 (214)
.|+|||+|+|+|||++|+.+|+. .+|||||||||+||||+|+++ |+.|+. ++|+|||++....++....|+.+
T Consensus 148 ~V~WGG~S~V~AtL~~m~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~ 227 (421)
T PLN03183 148 LVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIID 227 (421)
T ss_pred eeccCChHHHHHHHHHHHHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEec
Confidence 38999999999999999999985 689999999999999999999 566765 58899999875332211111110
Q ss_pred ---------cc---Cc--CcC-ccccccccceEEEeHHHHHHhHhchhHH-HHHHhhcCCCccCCchhHHHHhhccC--C
Q 039454 74 ---------WM---RP--DIK-IYQWRKGSQWFEMQRKVAIYIISDTKYL-TLFRKYCKPSCYPDEHYIPTYLNIFH--G 135 (214)
Q Consensus 74 ---------~~---~p--~~~-~~~~~~GSqW~~Ltr~~~~~il~~~~~~-~~~~~~~~~t~~pDE~ffqTll~n~~--~ 135 (214)
.+ .+ ..+ ...+|+||+|++|||++|+|++...+.. ..++.++..+++|||.||||+|+|++ .
T Consensus 228 pgl~~~~ks~~~~~~~~R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~ 307 (421)
T PLN03183 228 PGLYSTNKSDIYWVTPRRSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFA 307 (421)
T ss_pred CceeecccchhhhhhhhccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhccccc
Confidence 00 01 111 2357899999999999999999643222 22455556679999999999999985 4
Q ss_pred CCccccceeEeeCCCCC-CCCCCccCCCCCHHHHHHHHhcCCCccccCCCCCCCCceEEecCCCCCchHHHHhhhhhh
Q 039454 136 SLMANRSVTWVDWSMLG-PHPAMYKKENITEEFIQSLRNSNGSLCLYNEQRTSRCYLFARKFAPNTLEPLLKISSKVM 212 (214)
Q Consensus 136 ~~~~~~~lryidW~~~~-~~P~~~~~~d~~~~~~~~l~~s~~~~c~~~~~~~~~~~lFARKf~~~~~~~ll~~~~~~~ 212 (214)
++++|+|+|||+|.+++ .||++|+.+| +++|.+| +++||||||. ++++|+.||+.+
T Consensus 308 ~t~vn~nLRyI~W~~~~~~~P~~l~~~D-----~~~l~~S--------------~~lFARKFd~--d~~vl~~Id~~l 364 (421)
T PLN03183 308 KTAVNHDLHYISWDNPPKQHPHTLSLND-----TEKMIAS--------------GAAFARKFRR--DDPVLDKIDKEL 364 (421)
T ss_pred ccccCCceeEEecCCCCCCCCcccCHHH-----HHHHHhC--------------CCccccCCCC--ChHHHHHHHHHH
Confidence 78899999999998764 4999999999 8999998 8999999997 478999998753
No 2
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=100.00 E-value=4.6e-44 Score=301.00 Aligned_cols=172 Identities=31% Similarity=0.540 Sum_probs=116.4
Q ss_pred CccccchhHHHHHHHHHHHHhh-CCCCCEEEEecCCCccCCCcHHHHHHHhCC--CCccEEeecCCCCccccccccc---
Q 039454 1 NVGWGTVEMADAEKRLLANALL-DFSNERFVLLSESCIPIYNFPTVYKYLTGS--PYSFVESYDDPSRYGRGRYSRW--- 74 (214)
Q Consensus 1 ~v~WG~~S~v~A~l~l~~~al~-~~~~~~fillSg~D~PL~s~~~i~~~l~~~--~~~fi~~~~~~~~~~~~r~~~~--- 74 (214)
+|.|||+|||+|+|.||++|++ +++|+|||||||+||||+|+++|.+||+.. +.+|+++...+......||...
T Consensus 63 ~v~WG~~S~v~A~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~~f~~~~~~~~~~~~~r~~~~~~~ 142 (244)
T PF02485_consen 63 DVRWGGFSLVEATLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDNNFIESFSDEDPRESGRYNPRIYD 142 (244)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT--B---BEE--GGGG-HHHHEEEET
T ss_pred ccccCCccHHHHHHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCCcceecccccccchhhcceeeeee
Confidence 4899999999999999999999 689999999999999999999999999753 5788998876653222555443
Q ss_pred -cCcCcCccccccccceEEEeHHHHHHhHhchhHHHHHHhhcCCCccCCchhHHHHhhccC--CCCccccceeEeeCC-C
Q 039454 75 -MRPDIKIYQWRKGSQWFEMQRKVAIYIISDTKYLTLFRKYCKPSCYPDEHYIPTYLNIFH--GSLMANRSVTWVDWS-M 150 (214)
Q Consensus 75 -~~p~~~~~~~~~GSqW~~Ltr~~~~~il~~~~~~~~~~~~~~~t~~pDE~ffqTll~n~~--~~~~~~~~lryidW~-~ 150 (214)
+.+..+...+|+|||||+|||++|+||+++....+.+..+++++++|||+||||||+|++ ..+++++++|||+|+ +
T Consensus 143 ~~~~~~~~~~~~~GSqW~~Ltr~~v~~il~~~~~~~~~~~~~~~~~~pDE~ffqTll~n~~~~~~~~~~~~~r~i~W~~~ 222 (244)
T PF02485_consen 143 PFRPFFRKRTLYKGSQWFSLTRDFVEYILDDPNYRPKLKKYFRFSLCPDESFFQTLLNNSGHFKDTIVNRNLRYIDWSRR 222 (244)
T ss_dssp TEEEEEEEE--EEE-S--EEEHHHHHHHHH-HHHHHHHHHHT-TSSSGGGTHHHHH--SSGGG-B-TTTSSSEEE-BTGT
T ss_pred ecccccccccccccceeeEeeHHHHHHhhhhHHHHHHHHHhhcCccCcchhhHHHhhcccchhcccccCCCEEEEECCCC
Confidence 222222236899999999999999999988888888888889999999999999999983 478899999999999 7
Q ss_pred CCCCCCCccCCCCCHHHHHHHH
Q 039454 151 LGPHPAMYKKENITEEFIQSLR 172 (214)
Q Consensus 151 ~~~~P~~~~~~d~~~~~~~~l~ 172 (214)
+++||++++.++++++.++.|+
T Consensus 223 ~~~~p~~~~~~~~~~~d~~~~~ 244 (244)
T PF02485_consen 223 GGCHPKTLTICDLGPEDLPWLK 244 (244)
T ss_dssp -SS---SSEEEE--GGGHHHH-
T ss_pred CCCCCCeeeeeeeCHHHHHhhC
Confidence 7899999998888766676653
No 3
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=99.95 E-value=6.3e-28 Score=218.32 Aligned_cols=193 Identities=18% Similarity=0.176 Sum_probs=139.9
Q ss_pred CccccchhHHHHHHHHHHHHhhC-CCCCEEEEecCCCccCCCcHHHHHHHhC-CCCccEEeecCCCCc--ccccccc---
Q 039454 1 NVGWGTVEMADAEKRLLANALLD-FSNERFVLLSESCIPIYNFPTVYKYLTG-SPYSFVESYDDPSRY--GRGRYSR--- 73 (214)
Q Consensus 1 ~v~WG~~S~v~A~l~l~~~al~~-~~~~~fillSg~D~PL~s~~~i~~~l~~-~~~~fi~~~~~~~~~--~~~r~~~--- 73 (214)
.|.|||+|+++|.++||+.+++. ++|+|||+|||+||||||+.||.+.|+. +|.+||+.....++. .+.++..
T Consensus 166 ~v~~~G~s~l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L~g~N~i~~~~~~~~~~~~~~k~~~~~~ 245 (439)
T KOG0799|consen 166 SVTYGGHSILAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKILRGANFVEHTSEIGWKLNRKAKWDIIDL 245 (439)
T ss_pred ceecCCchhhHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHcCCcccccCcccccHHHhcccCCccccc
Confidence 37899999999999999999986 4699999999999999999999999987 899999987655421 1111110
Q ss_pred -------ccC-cCcC-ccccccccceEEEeHHHHHHhHhchhHHHHHHhhcCCCccCCchhHHHHhhccCCCCccccc--
Q 039454 74 -------WMR-PDIK-IYQWRKGSQWFEMQRKVAIYIISDTKYLTLFRKYCKPSCYPDEHYIPTYLNIFHGSLMANRS-- 142 (214)
Q Consensus 74 -------~~~-p~~~-~~~~~~GSqW~~Ltr~~~~~il~~~~~~~~~~~~~~~t~~pDE~ffqTll~n~~~~~~~~~~-- 142 (214)
.+. +.++ ...+++||.|++|+|++|+|++..... ..+..++++++.|||+||+|+++|+.......++
T Consensus 246 ~~~~~~s~~~~~~lp~~~ki~~Gs~~~~LsR~fv~y~i~~~~~-~~ll~~~~~t~~~dE~f~~Tl~~n~~~~~g~~~~~~ 324 (439)
T KOG0799|consen 246 KYFRNKSPLPWVILPTALKLFKGSAWVSLSRAFVEYLISGNLP-RTLLMYYNNTYSPDEGFFHTLQCNPFGMPGVFNDEC 324 (439)
T ss_pred chheecCCCccccCCCceEEEecceeEEEeHHHHHHHhcCccH-HHHHHHHhCccCcchhhhHhhhccccCCCCcccchh
Confidence 010 0112 224789999999999999999987443 3477777899999999999999999434445666
Q ss_pred eeEeeCCC-----CCCCCCCccCCCCC----HHHHHHHHhcCCCccccCCCCCCCCceEEecCCCCCchHHHHhh
Q 039454 143 VTWVDWSM-----LGPHPAMYKKENIT----EEFIQSLRNSNGSLCLYNEQRTSRCYLFARKFAPNTLEPLLKIS 208 (214)
Q Consensus 143 lryidW~~-----~~~~P~~~~~~d~~----~~~~~~l~~s~~~~c~~~~~~~~~~~lFARKf~~~~~~~ll~~~ 208 (214)
+|++.|.. .+.||..++..|.. -+.+..++++ +.++|-||....+..++...
T Consensus 325 lr~~~W~~~~~~~~~~~c~~~~~~~~~cv~g~~~~~~~~k~--------------~~l~~nkvl~~~d~~~i~c~ 385 (439)
T KOG0799|consen 325 LRYTNWDRKDVDPPKQHCHSLTVRDFICVFGSGDLPFARKF--------------PHLVANKVLDKFDPELIGCL 385 (439)
T ss_pred hcceecccccccccccCCcccccccceeeeecchhHHHhhC--------------chhhcccchhccCHHHHhhh
Confidence 99999986 23467777776621 0002344443 45566666666666665444
No 4
>COG4746 Uncharacterized protein conserved in archaea [Function unknown]
Probab=51.38 E-value=9.8 Score=26.29 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=18.9
Q ss_pred EEecCCCccCCCcHHHHHHHhC
Q 039454 30 VLLSESCIPIYNFPTVYKYLTG 51 (214)
Q Consensus 30 illSg~D~PL~s~~~i~~~l~~ 51 (214)
-++|..|||.++.+++.+-+-+
T Consensus 55 kLlT~~DFPfk~a~~vad~iv~ 76 (80)
T COG4746 55 KLLTDADFPFKSAEQVADTIVN 76 (80)
T ss_pred hhccccCCCCCCHHHHHHHHHH
Confidence 5799999999999999887643
No 5
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=46.74 E-value=40 Score=23.40 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=27.1
Q ss_pred CCCCEEEEecCCCccCCCcHHHHHHHhCCCCccEEe
Q 039454 24 FSNERFVLLSESCIPIYNFPTVYKYLTGSPYSFVES 59 (214)
Q Consensus 24 ~~~~~fillSg~D~PL~s~~~i~~~l~~~~~~fi~~ 59 (214)
+...+||-=|.+++ +.+++.+||..+|| ||+.
T Consensus 32 G~~arFhTCSa~~m---~a~~Li~FL~~kgK-fi~~ 63 (77)
T TIGR03853 32 GEDARFHTCSAEGM---TADELLQFLLKKGK-FIES 63 (77)
T ss_pred CCCceEeecccccC---CHHHHHHHHHHCCC-Eeec
Confidence 56789999999997 67999999988777 6654
No 6
>PF07747 MTH865: MTH865-like family; InterPro: IPR024093 This entry represents a group of uncharacterised hypothetical proteins from archaea, including the 8.4 kDa protein MTH865 from Methanobacterium thermoautotrophicum. The NMR structure of MTH865 reveals an EF-Hand-like fold consisting of four helices in two hairpins [].; PDB: 1IIO_A.
Probab=46.72 E-value=8.8 Score=26.53 Aligned_cols=19 Identities=16% Similarity=0.132 Sum_probs=15.8
Q ss_pred ecCCCccCCCcHHHHHHHh
Q 039454 32 LSESCIPIYNFPTVYKYLT 50 (214)
Q Consensus 32 lSg~D~PL~s~~~i~~~l~ 50 (214)
+.|.||||+|..++..-|=
T Consensus 11 ~~~a~FPI~s~~eL~~alP 29 (75)
T PF07747_consen 11 FKGADFPIKSPMELLPALP 29 (75)
T ss_dssp HTTSSSTTBHHHHHHHH-T
T ss_pred HhcCCCCCCCHHHHHHhCC
Confidence 4688999999999999983
No 7
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=32.58 E-value=77 Score=21.94 Aligned_cols=36 Identities=6% Similarity=0.073 Sum_probs=27.6
Q ss_pred cccchhHHHHHHHHHHHHhhCCCCCEEEEecCCCcc
Q 039454 3 GWGTVEMADAEKRLLANALLDFSNERFVLLSESCIP 38 (214)
Q Consensus 3 ~WG~~S~v~A~l~l~~~al~~~~~~~fillSg~D~P 38 (214)
+++|-...+-.+...++.-.....+.+++.+|.+||
T Consensus 2 Ri~G~dRyeTs~~va~~~~~~~~~~~v~ia~g~~~~ 37 (92)
T PF04122_consen 2 RISGADRYETSAKVAKKFYPDNKSDKVYIASGDNFA 37 (92)
T ss_pred CCCCCCHHHHHHHHHHHhcccCCCCEEEEEeCcchh
Confidence 567778888888888885544577888999998865
No 8
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=30.56 E-value=93 Score=21.64 Aligned_cols=32 Identities=19% Similarity=0.228 Sum_probs=26.8
Q ss_pred CCCCEEEEecCCCccCCCcHHHHHHHhCCCCccEEe
Q 039454 24 FSNERFVLLSESCIPIYNFPTVYKYLTGSPYSFVES 59 (214)
Q Consensus 24 ~~~~~fillSg~D~PL~s~~~i~~~l~~~~~~fi~~ 59 (214)
+...+||-=|++++ +.+++.+||..+|| ||+.
T Consensus 34 G~~arFhTCSae~m---~a~eLv~FL~~rgK-fi~~ 65 (78)
T PF10678_consen 34 GEDARFHTCSAEGM---TADELVDFLEERGK-FIPS 65 (78)
T ss_pred CCCceEEecCCCCC---CHHHHHHHHHHcCC-Eeec
Confidence 56789999999998 67999999988777 6653
No 9
>PF12610 SOCS: Suppressor of cytokine signalling; InterPro: IPR022252 This domain family is found in bacteria and eukaryotes, and is approximately 60 amino acids in length. The family is found in association with PF07525 from PFAM, PF00017 from PFAM. The suppressors of cytokine signaling (SOCS) family play important roles in regulating a variety of signal transduction pathways that are involved in immunity, growth and development of organisms.
Probab=26.63 E-value=21 Score=23.56 Aligned_cols=10 Identities=30% Similarity=0.746 Sum_probs=8.2
Q ss_pred CCCccCCCcH
Q 039454 34 ESCIPIYNFP 43 (214)
Q Consensus 34 g~D~PL~s~~ 43 (214)
|+||||++..
T Consensus 48 G~CfPir~~~ 57 (60)
T PF12610_consen 48 GQCFPIRTHA 57 (60)
T ss_pred heeeeccccc
Confidence 8999998753
No 10
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=22.90 E-value=1.2e+02 Score=22.63 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=28.4
Q ss_pred HHHHHHHHHhhCCCCCEEEEecCCCccCCCcHHHHHHHhCCCCccEEe
Q 039454 12 AEKRLLANALLDFSNERFVLLSESCIPIYNFPTVYKYLTGSPYSFVES 59 (214)
Q Consensus 12 A~l~l~~~al~~~~~~~fillSg~D~PL~s~~~i~~~l~~~~~~fi~~ 59 (214)
-.+.+++.|..+ ..+.++++||+. ......+.+...|+.-+-.
T Consensus 87 l~~d~~~~~~~~-~~d~ivLvSgD~----Df~~~i~~lr~~G~~V~v~ 129 (149)
T cd06167 87 LAIDALELAYKR-RIDTIVLVSGDS----DFVPLVERLRELGKRVIVV 129 (149)
T ss_pred HHHHHHHHhhhc-CCCEEEEEECCc----cHHHHHHHHHHcCCEEEEE
Confidence 344566666654 789999999976 5556666666666655433
No 11
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=22.43 E-value=1.1e+02 Score=24.21 Aligned_cols=46 Identities=7% Similarity=0.004 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEecCCCccCCCcHHHHHHHhCCCCccEEee
Q 039454 10 ADAEKRLLANALLDFSNERFVLLSESCIPIYNFPTVYKYLTGSPYSFVESY 60 (214)
Q Consensus 10 v~A~l~l~~~al~~~~~~~fillSg~D~PL~s~~~i~~~l~~~~~~fi~~~ 60 (214)
|..++.+|+.+. .+..|.|+++||.. .+..+...+...|+.-+.+-
T Consensus 91 v~laIDame~~~-~~~iD~~vLvSgD~----DF~~Lv~~lre~G~~V~v~g 136 (160)
T TIGR00288 91 VRMAVEAMELIY-NPNIDAVALVTRDA----DFLPVINKAKENGKETIVIG 136 (160)
T ss_pred HHHHHHHHHHhc-cCCCCEEEEEeccH----hHHHHHHHHHHCCCEEEEEe
Confidence 566788888776 47889999999973 45667777766677555443
Done!