Query 039454
Match_columns 214
No_of_seqs 118 out of 723
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 16:45:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039454.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039454hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gak_A Beta-1,6-N-acetylglucos 100.0 1.1E-46 3.7E-51 336.1 15.0 190 1-212 147-381 (391)
2 3fxd_A Protein ICMQ; helix bun 46.8 13 0.00044 23.3 2.3 20 8-27 8-27 (57)
3 1iio_A Conserved hypothetical 40.0 6.4 0.00022 26.8 0.1 21 30-50 59-79 (84)
4 1ezi_A CMP-N-acetylneuraminic 26.1 1.1E+02 0.0038 23.3 5.4 44 5-51 78-121 (228)
5 1jsd_A Haemagglutinin (HA1 cha 23.1 29 0.00098 29.4 1.3 39 24-62 74-119 (319)
6 3ku3_A Hemagglutinin HA1 chain 20.4 42 0.0015 28.4 1.8 39 24-62 76-121 (327)
7 4gxx_A Hemagglutinin HA1 chain 19.8 57 0.0019 27.7 2.5 39 24-62 78-123 (331)
8 4fqi_A Hemagglutinin HA1; neut 17.8 55 0.0019 27.8 1.9 39 24-62 78-123 (334)
9 3ubq_A Hemagglutinin HA1; vira 16.4 56 0.0019 27.7 1.7 39 24-62 76-121 (329)
10 1vpa_A 2-C-methyl-D-erythritol 15.7 2.2E+02 0.0075 21.5 5.0 44 5-50 87-130 (234)
No 1
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A*
Probab=100.00 E-value=1.1e-46 Score=336.09 Aligned_cols=190 Identities=16% Similarity=0.185 Sum_probs=157.8
Q ss_pred CccccchhHHHHHHHHHHHHhhC-CCCCEEEEecCCCccCCCcHHHHHHHhC-CCCccEEeecCCCCc-ccccccc----
Q 039454 1 NVGWGTVEMADAEKRLLANALLD-FSNERFVLLSESCIPIYNFPTVYKYLTG-SPYSFVESYDDPSRY-GRGRYSR---- 73 (214)
Q Consensus 1 ~v~WG~~S~v~A~l~l~~~al~~-~~~~~fillSg~D~PL~s~~~i~~~l~~-~~~~fi~~~~~~~~~-~~~r~~~---- 73 (214)
+|.|||+|||+|+++||+.||++ .+|+|||||||+||||+|+.+|++||+. .|++||++...+++. .|.+|.+
T Consensus 147 ~v~WGg~S~v~A~l~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~~~~nFIe~~~~~~~~~~R~~~~~~~~~ 226 (391)
T 2gak_A 147 SVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKEERWKKRYAVVD 226 (391)
T ss_dssp CCCTTSHHHHHHHHHHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHTTTCCBCCBEECCGGGSHHHHEEEEEET
T ss_pred ccccCCchHHHHHHHHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhcCCCceeeccCCCcccccceEeeeeccc
Confidence 58999999999999999999986 4899999999999999999999999975 899999998765431 2222211
Q ss_pred ----------ccCcCcCccccccccceEEEeHHHHHHhHhchhHHHHHHhhcCCCccCCchhHHHHhhccC-CC------
Q 039454 74 ----------WMRPDIKIYQWRKGSQWFEMQRKVAIYIISDTKYLTLFRKYCKPSCYPDEHYIPTYLNIFH-GS------ 136 (214)
Q Consensus 74 ----------~~~p~~~~~~~~~GSqW~~Ltr~~~~~il~~~~~~~~~~~~~~~t~~pDE~ffqTll~n~~-~~------ 136 (214)
++.|. ...+++|||||+|||++|+||++|.. .+.|.++|+++++|||+|||||+.+.+ +.
T Consensus 227 ~~l~~~~~~k~~~P~--~~~~~~GSqW~~LtR~~v~~vl~d~~-~~~~~~~~k~t~~pDE~ffqTll~~~~~pg~~~~~~ 303 (391)
T 2gak_A 227 GKLTNTGIVKAPPPL--KTPLFSGSAYFVVTREYVGYVLENEN-IQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSN 303 (391)
T ss_dssp TEEEEEEEECCCCSC--SSCCEECCSCCEEEHHHHHHHHHCHH-HHHHHHHHTTSSSGGGTHHHHHTTSTTSTTCCCSSG
T ss_pred cceeeecccccCCcc--ccceecccceeEecHHHHHHHHhCCc-HHHHHHHHcCCcCCchhHHHHHhhccCCCCcccccc
Confidence 12232 23689999999999999999999865 556889999999999999999999863 21
Q ss_pred ----CccccceeEeeCCC-------CCCCCC----------CccCCCCCHHHHHHHHhcCCCccccCCCCCCCCceEEec
Q 039454 137 ----LMANRSVTWVDWSM-------LGPHPA----------MYKKENITEEFIQSLRNSNGSLCLYNEQRTSRCYLFARK 195 (214)
Q Consensus 137 ----~~~~~~lryidW~~-------~~~~P~----------~~~~~d~~~~~~~~l~~s~~~~c~~~~~~~~~~~lFARK 195 (214)
+.+++++|||+|.. |++||. +|+.+| ++.|++| ++|||||
T Consensus 304 ~~~~~~~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~D-----l~~l~~s--------------~~lFARK 364 (391)
T 2gak_A 304 KYDLSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGD-----LSWMLRQ--------------HHLFANK 364 (391)
T ss_dssp GGCBCTTTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGG-----HHHHTTS--------------CCSEEEC
T ss_pred ccccccccCceEEEEecccCCccccCCCCCCCccceecceeeecHHH-----HHHHHhC--------------CCceEEc
Confidence 23578999999973 344676 899999 8999987 8999999
Q ss_pred CCCCCchHHHHhhhhhh
Q 039454 196 FAPNTLEPLLKISSKVM 212 (214)
Q Consensus 196 f~~~~~~~ll~~~~~~~ 212 (214)
|++++++.+++.|++.+
T Consensus 365 F~~~~d~~~l~~l~~~l 381 (391)
T 2gak_A 365 FDMDVDPFAIQCLDEHL 381 (391)
T ss_dssp CCTTTCHHHHHHHHHHH
T ss_pred cCCccCHHHHHHHHHHH
Confidence 99999999999998765
No 2
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=46.80 E-value=13 Score=23.27 Aligned_cols=20 Identities=15% Similarity=0.091 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHhhCCCCC
Q 039454 8 EMADAEKRLLANALLDFSNE 27 (214)
Q Consensus 8 S~v~A~l~l~~~al~~~~~~ 27 (214)
-+.+|.|.++.+|++.++|+
T Consensus 8 eq~~aILkaLdeaIe~GPWe 27 (57)
T 3fxd_A 8 EQKETILKALNDAIEKGPWD 27 (57)
T ss_dssp HHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHcCCch
Confidence 36789999999999998885
No 3
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=39.99 E-value=6.4 Score=26.79 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=17.9
Q ss_pred EEecCCCccCCCcHHHHHHHh
Q 039454 30 VLLSESCIPIYNFPTVYKYLT 50 (214)
Q Consensus 30 illSg~D~PL~s~~~i~~~l~ 50 (214)
=+|..+|||+++.+++.+-+.
T Consensus 59 kll~~~DFP~ksA~~lAd~iv 79 (84)
T 1iio_A 59 QVLTADDFPFKSAEEVADTIV 79 (84)
T ss_dssp GGSCGGGSBCSHHHHHHHHHH
T ss_pred hhCCcccCCCCCHHHHHHHHH
Confidence 468889999999999988764
No 4
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=26.13 E-value=1.1e+02 Score=23.27 Aligned_cols=44 Identities=9% Similarity=0.023 Sum_probs=28.7
Q ss_pred cchhHHHHHHHHHHHHhhCCCCCEEEEecCCCccCCCcHHHHHHHhC
Q 039454 5 GTVEMADAEKRLLANALLDFSNERFVLLSESCIPIYNFPTVYKYLTG 51 (214)
Q Consensus 5 G~~S~v~A~l~l~~~al~~~~~~~fillSg~D~PL~s~~~i~~~l~~ 51 (214)
|+-+...+...+++.+ ....+++ ++...|.|+.+...|.+.+..
T Consensus 78 ~~~g~~~sv~~~l~~~--~~~~d~v-lv~~~D~P~~~~~~i~~l~~~ 121 (228)
T 1ezi_A 78 DTASSISGVIHALETI--GSNSGTV-TLLQPTSPLRTGAHIREAFSL 121 (228)
T ss_dssp --CHHHHHHHHHHHHH--TCCSEEE-EECCTTCTTCCHHHHHHHHTT
T ss_pred CCCChHHHHHHHHHHh--CCCCCEE-EEEcCCCCcCCHHHHHHHHHH
Confidence 5556666666666654 2234555 455679999999999988753
No 5
>1jsd_A Haemagglutinin (HA1 chain); viral protein; HET: NAG; 1.80A {Influenza a virus} SCOP: b.19.1.2 PDB: 1jsh_A* 1jsi_A*
Probab=23.10 E-value=29 Score=29.37 Aligned_cols=39 Identities=18% Similarity=0.355 Sum_probs=31.2
Q ss_pred CCCCEEEE----ecCCCcc--CCCcHHHHHHHhC-CCCccEEeecC
Q 039454 24 FSNERFVL----LSESCIP--IYNFPTVYKYLTG-SPYSFVESYDD 62 (214)
Q Consensus 24 ~~~~~fil----lSg~D~P--L~s~~~i~~~l~~-~~~~fi~~~~~ 62 (214)
..|+|+|= ..|-||| +-..++|.+.|++ .+.+++++++.
T Consensus 74 ~~WsyiVEr~~~~ng~CYPG~~~d~eeLR~l~ss~~s~er~~~~p~ 119 (319)
T 1jsd_A 74 REWSYIVERPSAVNGMCYPGNVENLEELRSLFSSASSYQRIQIFPD 119 (319)
T ss_dssp EECSSEEECTTCCBSCCSSCCBTTHHHHHHHHHHSSEEEEEESSCG
T ss_pred CceEEEEeCCCCCCCcccCcccCCHHHHHHHHhccCccceEEecCC
Confidence 35899997 4679999 6788999999975 77788887743
No 6
>3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral fusion protein, protein, viral protein; HET: NAG; 1.60A {Influenza a virus} SCOP: b.19.1.2 PDB: 3qqb_A* 3qqe_A* 3qqo_A* 3ku6_A* 3ku5_A* 1jsm_A* 1jsn_A* 1jso_A* 3qqi_A*
Probab=20.36 E-value=42 Score=28.44 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=30.7
Q ss_pred CCCCEEEE----ecCCCcc--CCCcHHHHHHHhC-CCCccEEeecC
Q 039454 24 FSNERFVL----LSESCIP--IYNFPTVYKYLTG-SPYSFVESYDD 62 (214)
Q Consensus 24 ~~~~~fil----lSg~D~P--L~s~~~i~~~l~~-~~~~fi~~~~~ 62 (214)
..|+|+|= ..|.||| +-..+++.+.|++ .+.++|++++.
T Consensus 76 ~~WsyIVEr~~a~ng~CYPG~~~d~eeLR~l~ss~~~~erieifp~ 121 (327)
T 3ku3_A 76 PEWSYIMEKENPRDGLCYPGSFNDYEELKHLLSSVKHFEKVKILPK 121 (327)
T ss_dssp CCCSCEEECSSCSBSCSSCEEETTHHHHHHHHTTEEEEEEECCSCG
T ss_pred ceeEEEEEcCCCCCCcccCCccCCHHHHHHHHhccCCceeEEecCC
Confidence 57999998 5678999 6788889999976 66778877653
No 7
>4gxx_A Hemagglutinin HA1 chain; viral fusion protein, virus attachment and entry, viral PROT; HET: NAG BMA MAN; 1.80A {Influenza a virus} PDB: 3gbn_A* 3lzf_A* 3r2x_A* 4eef_A* 4gxu_A* 1rd8_A* 2wrg_H* 1ruz_H* 1rv0_H* 1rvt_H* 1ruy_H* 3hto_A* 3htp_A* 3htq_A* 3htt_A* 2wrh_H* 3m6s_A* 4f3z_A* 3lzg_A* 3al4_A* ...
Probab=19.80 E-value=57 Score=27.71 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=31.2
Q ss_pred CCCCEEEE----ecCCCcc--CCCcHHHHHHHhC-CCCccEEeecC
Q 039454 24 FSNERFVL----LSESCIP--IYNFPTVYKYLTG-SPYSFVESYDD 62 (214)
Q Consensus 24 ~~~~~fil----lSg~D~P--L~s~~~i~~~l~~-~~~~fi~~~~~ 62 (214)
..|+|+|= ..|-||| +-..+++.+.|++ .+.++|++++.
T Consensus 78 ~~WsyIVEr~~a~ng~CYPG~~~d~eeLR~llss~~~~er~~ifp~ 123 (331)
T 4gxx_A 78 SSWSYIVETSNSENGTCYPGDFIDYEELREQLSSVSSFEKFEIFPK 123 (331)
T ss_dssp CBCSSEEECTTCCBSCSSCSCBTTHHHHHHHHTTEEEEEEEESSCT
T ss_pred ceeEEEEEcCCCCCCCCCCCccCCHHHHHHHHhccCCceeEEecCC
Confidence 57999998 5678999 6677889999876 66788887765
No 8
>4fqi_A Hemagglutinin HA1; neutralizing antibodies, antibody affinity, antigens, epitop glycosylation, hemagglutinin glycoproteins; HET: NAG; 1.71A {Influenza a virus} PDB: 2fk0_A* 3gbm_A* 3fku_A* 2ibx_A* 3s13_A* 3s12_A* 3s11_A*
Probab=17.76 E-value=55 Score=27.84 Aligned_cols=39 Identities=10% Similarity=0.254 Sum_probs=31.0
Q ss_pred CCCCEEEE----ecCCCcc--CCCcHHHHHHHhC-CCCccEEeecC
Q 039454 24 FSNERFVL----LSESCIP--IYNFPTVYKYLTG-SPYSFVESYDD 62 (214)
Q Consensus 24 ~~~~~fil----lSg~D~P--L~s~~~i~~~l~~-~~~~fi~~~~~ 62 (214)
..|+|+|= .+|-||| +-..++|.+.|+. .+.++|++++.
T Consensus 78 ~~WsyIvEr~~~~ng~CYPG~~~d~eeLR~llss~~~~er~~ifp~ 123 (334)
T 4fqi_A 78 PEWSYIVEKANPVNDLCYPGDFNDYEELKHLLSRINHFEKIQIIPK 123 (334)
T ss_dssp CCCSCEEECSSCSBSCSSCEEETTHHHHHHHHTTEEEEEEEESSCG
T ss_pred CceeEEEecCCCCCCcccCCccCCHHHHHHHHhccCceeeEEecCC
Confidence 57899886 4577999 7778888898876 77899998764
No 9
>3ubq_A Hemagglutinin HA1; viral envelope protein, viral fusion protein, protein-immune system complex; HET: NAG SIA GAL; 2.00A {Influenza a virus} PDB: 3ubj_A* 3ubn_A* 3ube_A* 3lzg_A* 3ztn_A* 3al4_A* 3lyj_A* 3m6s_A* 3gbn_A* 3lzf_A* 3r2x_A* 1ruy_H* 1rd8_A* 1rvt_H* 1rv0_H* 2wrg_H* 1ruz_H* 3hto_A* 3htp_A* 3htq_A* ...
Probab=16.38 E-value=56 Score=27.72 Aligned_cols=39 Identities=18% Similarity=0.330 Sum_probs=31.5
Q ss_pred CCCCEEEEe----cCCCcc--CCCcHHHHHHHhC-CCCccEEeecC
Q 039454 24 FSNERFVLL----SESCIP--IYNFPTVYKYLTG-SPYSFVESYDD 62 (214)
Q Consensus 24 ~~~~~fill----Sg~D~P--L~s~~~i~~~l~~-~~~~fi~~~~~ 62 (214)
..|+|+|=- .|-||| +-..++|.+.|++ ...++|++++.
T Consensus 76 ~~WsyivEr~~~~ng~CYPg~~~d~eeLR~l~ss~~~~er~~i~p~ 121 (329)
T 3ubq_A 76 SSWSYIVETPSSDNGTCYPGDFIDYEELREQLSSVSSFERFEIFPK 121 (329)
T ss_dssp SCBSSEEECTTCCBSCSSCCCBTTHHHHHHHHSSEEEEEEECSSCT
T ss_pred CceEEEEECCCCCCCcccCCccCCHHHHHHHHhccCcceeeEeccC
Confidence 458999975 478999 6788999999976 67788888863
No 10
>1vpa_A 2-C-methyl-D-erythritol 4-phosphate cytidylyltran; TM1393, JCSG, joint center for structural GENO PSI, protein structure initiative; HET: CTP; 2.67A {Thermotoga maritima} SCOP: c.68.1.13
Probab=15.69 E-value=2.2e+02 Score=21.51 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=28.6
Q ss_pred cchhHHHHHHHHHHHHhhCCCCCEEEEecCCCccCCCcHHHHHHHh
Q 039454 5 GTVEMADAEKRLLANALLDFSNERFVLLSESCIPIYNFPTVYKYLT 50 (214)
Q Consensus 5 G~~S~v~A~l~l~~~al~~~~~~~fillSg~D~PL~s~~~i~~~l~ 50 (214)
||-++..+...+++.+-. ...+++ ++...|.|+.+.+.|...+.
T Consensus 87 gg~~~~~sv~~al~~~~~-~~~~~v-lv~~~D~Pli~~~~i~~l~~ 130 (234)
T 1vpa_A 87 GGDTRSQSVRSALEFLEK-FSPSYV-LVHDSARPFLRKKHVSEVLR 130 (234)
T ss_dssp CCSSHHHHHHHHHHHHGG-GCCSEE-EEEETTSCCCCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhhh-cCCCEE-EEecCcccCCCHHHHHHHHH
Confidence 455566667777765422 134544 45556999999988887764
Done!