Query 039454
Match_columns 214
No_of_seqs 118 out of 723
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 16:45:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039454.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/039454hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iioa_ a.39.4.1 (A:) Hypothet 49.1 1.8 0.00013 27.9 0.1 21 30-50 59-79 (84)
2 d2qalc1 d.52.3.1 (C:1-105) Rib 32.3 9.8 0.00072 25.2 1.8 30 86-115 17-46 (105)
3 d2uubc1 d.52.3.1 (C:2-106) Rib 20.4 13 0.00098 24.4 0.7 30 86-115 17-46 (105)
4 d1qwja_ c.68.1.13 (A:) CMP acy 17.2 1E+02 0.0075 21.3 5.3 43 14-57 82-128 (228)
5 d1eyra_ c.68.1.13 (A:) CMP acy 15.7 98 0.0071 21.2 4.8 26 24-50 95-120 (225)
6 d1c9fa_ d.15.2.1 (A:) Caspase- 15.1 11 0.00077 24.2 -0.9 15 118-133 56-70 (87)
7 d1jsda_ b.19.1.2 (A:) Hemagglu 14.3 31 0.0022 27.2 1.5 39 24-62 74-119 (317)
8 d1ibxa_ d.15.2.1 (A:) Caspase- 13.9 12 0.00085 23.7 -0.9 15 118-133 53-67 (81)
9 d1jsma_ b.19.1.2 (A:) Hemagglu 10.4 70 0.0051 25.0 2.5 40 23-62 73-119 (321)
10 d1x4ka2 g.39.1.3 (A:8-34) Four 10.0 35 0.0025 16.6 0.3 7 85-91 17-23 (27)
No 1
>d1iioa_ a.39.4.1 (A:) Hypothetical protein MTH865 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=49.10 E-value=1.8 Score=27.90 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=18.1
Q ss_pred EEecCCCccCCCcHHHHHHHh
Q 039454 30 VLLSESCIPIYNFPTVYKYLT 50 (214)
Q Consensus 30 illSg~D~PL~s~~~i~~~l~ 50 (214)
=+|+++|||+++.+++.+-+.
T Consensus 59 k~l~~~DFP~ksae~lad~ii 79 (84)
T d1iioa_ 59 QVLTADDFPFKSAEEVADTIV 79 (84)
T ss_dssp GGSCGGGSBCSHHHHHHHHHH
T ss_pred hhcCcccCCCCCHHHHHHHHH
Confidence 468999999999999988764
No 2
>d2qalc1 d.52.3.1 (C:1-105) Ribosomal protein S3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.28 E-value=9.8 Score=25.17 Aligned_cols=30 Identities=27% Similarity=0.265 Sum_probs=24.3
Q ss_pred cccceEEEeHHHHHHhHhchhHHHHHHhhc
Q 039454 86 KGSQWFEMQRKVAIYIISDTKYLTLFRKYC 115 (214)
Q Consensus 86 ~GSqW~~Ltr~~~~~il~~~~~~~~~~~~~ 115 (214)
..|.||+=.++.+++|.+|......+.+.+
T Consensus 17 ~~S~Wfa~~~~Y~~~l~eD~~IR~~i~k~~ 46 (105)
T d2qalc1 17 WNSTWFANTKEFADNLDSDFKVRQYLTKEL 46 (105)
T ss_dssp CSCCCCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCEEcCCccchHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999988776444544
No 3
>d2uubc1 d.52.3.1 (C:2-106) Ribosomal protein S3 N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=20.43 E-value=13 Score=24.38 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=24.0
Q ss_pred cccceEEEeHHHHHHhHhchhHHHHHHhhc
Q 039454 86 KGSQWFEMQRKVAIYIISDTKYLTLFRKYC 115 (214)
Q Consensus 86 ~GSqW~~Ltr~~~~~il~~~~~~~~~~~~~ 115 (214)
-.|.||+=.++.+++|.+|......+.+.+
T Consensus 17 w~S~W~a~~~~y~~~l~eD~~IR~~i~k~~ 46 (105)
T d2uubc1 17 WESRWYAGKKQYRHLLLEDQRIRGLLEKEL 46 (105)
T ss_dssp CSCBCCCCTTTTTHHHHHHHHHHHHHHHST
T ss_pred CCceEcCChhhhHHHHHHHHHHHHHHHhhc
Confidence 479999989999999999988776444444
No 4
>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.20 E-value=1e+02 Score=21.25 Aligned_cols=43 Identities=12% Similarity=-0.018 Sum_probs=29.5
Q ss_pred HHHHHHHhhC-CCCCEEEEecCCCccCCCcHHHHHHHh---CCCCccE
Q 039454 14 KRLLANALLD-FSNERFVLLSESCIPIYNFPTVYKYLT---GSPYSFV 57 (214)
Q Consensus 14 l~l~~~al~~-~~~~~fillSg~D~PL~s~~~i~~~l~---~~~~~fi 57 (214)
+..+.+++.. ...++++++.+ |-|+.+.+.|.+.+. ..+.+.+
T Consensus 82 ~~~i~~~~~~~~~~~~iv~~~~-~~P~~~~~~I~~~i~~~~~~~~d~~ 128 (228)
T d1qwja_ 82 LDAIVEFLNYHNEVDIVGNIQA-TSPCLHPTDLQKVAEMIREEGYDSV 128 (228)
T ss_dssp HHHHHHHHTTCTTCSEEEEECT-TCTTCCHHHHHHHHHHHHSSCCSEE
T ss_pred hhhhhhccccccccceeeeecc-cccccCchhhhhhhhhhhccCcccc
Confidence 3445566654 45788998876 669999999988863 3444443
No 5
>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}
Probab=15.73 E-value=98 Score=21.22 Aligned_cols=26 Identities=12% Similarity=0.195 Sum_probs=21.2
Q ss_pred CCCCEEEEecCCCccCCCcHHHHHHHh
Q 039454 24 FSNERFVLLSESCIPIYNFPTVYKYLT 50 (214)
Q Consensus 24 ~~~~~fillSg~D~PL~s~~~i~~~l~ 50 (214)
..+++++.+.|.+ |+.+...|.+.+.
T Consensus 95 ~~~d~ii~~~~~~-P~~~~~~I~~~i~ 120 (225)
T d1eyra_ 95 SNSGTVTLLQPTS-PLRTGAHIREAFS 120 (225)
T ss_dssp CCSEEEEECCTTC-TTCCHHHHHHHHT
T ss_pred cccceEEEeeccc-cccccccccccce
Confidence 4578888886655 9999999999984
No 6
>d1c9fa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.07 E-value=11 Score=24.23 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=12.0
Q ss_pred CccCCchhHHHHhhcc
Q 039454 118 SCYPDEHYIPTYLNIF 133 (214)
Q Consensus 118 t~~pDE~ffqTll~n~ 133 (214)
|-+ ||.|||||=.|.
T Consensus 56 T~V-dEeYF~tLp~nT 70 (87)
T d1c9fa_ 56 TEV-TDDCFPGLPNDA 70 (87)
T ss_dssp CCB-CTTSCSSCCTTE
T ss_pred cEe-cHHHHhcCCCCC
Confidence 566 899999987665
No 7
>d1jsda_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
Probab=14.29 E-value=31 Score=27.17 Aligned_cols=39 Identities=18% Similarity=0.321 Sum_probs=30.6
Q ss_pred CCCCEEEEe----cCCCcc--CCCcHHHHHHHhC-CCCccEEeecC
Q 039454 24 FSNERFVLL----SESCIP--IYNFPTVYKYLTG-SPYSFVESYDD 62 (214)
Q Consensus 24 ~~~~~fill----Sg~D~P--L~s~~~i~~~l~~-~~~~fi~~~~~ 62 (214)
..|+|||=- +|-||| +-..++|.+.|+. .+.++|+.++.
T Consensus 74 ~~WsyivErp~a~ng~CYPg~~~d~eeLR~l~ss~~~~Er~e~~~~ 119 (317)
T d1jsda_ 74 REWSYIVERPSAVNGMCYPGNVENLEELRSLFSSASSYQRIQIFPD 119 (317)
T ss_dssp EECSSEEECTTCCBSCCSSCCBTTHHHHHHHHHHSSEEEEEESSCG
T ss_pred CceEEEEecCCcCCCcccccccCCHHHHHHHHhccCceeeEEecCc
Confidence 358999976 477999 7777888888875 77799987754
No 8
>d1ibxa_ d.15.2.1 (A:) Caspase-activated DNase (CAD), DFF40, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.94 E-value=12 Score=23.68 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=11.9
Q ss_pred CccCCchhHHHHhhcc
Q 039454 118 SCYPDEHYIPTYLNIF 133 (214)
Q Consensus 118 t~~pDE~ffqTll~n~ 133 (214)
|-+ ||.|||||=.|.
T Consensus 53 T~V-~EeYF~tLp~nT 67 (81)
T d1ibxa_ 53 TEL-TEDYFPSVPDNA 67 (81)
T ss_dssp SCC-CSSSCSSCCSCC
T ss_pred cEe-eHHHHhcCCCCc
Confidence 566 888999987665
No 9
>d1jsma_ b.19.1.2 (A:) Hemagglutinin {Influenza A virus, different strains [TaxId: 11320]}
Probab=10.44 E-value=70 Score=25.03 Aligned_cols=40 Identities=10% Similarity=0.158 Sum_probs=30.4
Q ss_pred CCCCCEEEE----ecCCCccC--CCcHHHHHHHhC-CCCccEEeecC
Q 039454 23 DFSNERFVL----LSESCIPI--YNFPTVYKYLTG-SPYSFVESYDD 62 (214)
Q Consensus 23 ~~~~~~fil----lSg~D~PL--~s~~~i~~~l~~-~~~~fi~~~~~ 62 (214)
...|+|||= .+|-|||. -..++|.+.|+. .+.+++++++.
T Consensus 73 ~~~WsyivEr~~~~ng~CYPg~~~d~eeLR~l~ss~~~~er~~i~~~ 119 (321)
T d1jsma_ 73 VPEWSYIVEKDNPVNGLCYPENFNDYEELKHLLSSTNHFEKIRIIPR 119 (321)
T ss_dssp CCCCSCEEECSSCSBSCSSCEEETTHHHHHHHHTTCSEEEEEESSCG
T ss_pred ccceeEEEecCCCCCCcccCcccCCHHHHHHHHhccCceeeEEecCC
Confidence 357898774 46789996 677888888875 77788887654
No 10
>d1x4ka2 g.39.1.3 (A:8-34) Four and a half LIM domains protein 2, FHL2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.98 E-value=35 Score=16.55 Aligned_cols=7 Identities=57% Similarity=1.165 Sum_probs=5.9
Q ss_pred ccccceE
Q 039454 85 RKGSQWF 91 (214)
Q Consensus 85 ~~GSqW~ 91 (214)
|+||.|.
T Consensus 17 ~kG~~WH 23 (27)
T d1x4ka2 17 YKGSSWH 23 (27)
T ss_dssp ETTEEEE
T ss_pred ccCCccc
Confidence 6999995
Done!