Query 039455
Match_columns 216
No_of_seqs 126 out of 1348
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 09:49:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039455.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039455hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 5.9E-27 1.3E-31 214.4 21.8 211 1-215 159-380 (1153)
2 PF00931 NB-ARC: NB-ARC domain 99.9 5.7E-27 1.2E-31 185.5 13.3 169 31-203 1-174 (287)
3 KOG4658 Apoptotic ATPase [Sign 99.9 1.6E-24 3.6E-29 191.2 15.2 182 29-216 161-348 (889)
4 PRK00411 cdc6 cell division co 99.6 3.4E-14 7.3E-19 117.4 16.1 173 23-199 27-220 (394)
5 TIGR02928 orc1/cdc6 family rep 99.6 2E-13 4.4E-18 111.7 17.0 174 23-200 12-213 (365)
6 PF05729 NACHT: NACHT domain 99.5 9.8E-14 2.1E-18 100.8 11.8 142 50-199 1-163 (166)
7 PF01637 Arch_ATPase: Archaeal 99.5 6.8E-14 1.5E-18 107.1 10.0 168 28-199 1-204 (234)
8 PRK06893 DNA replication initi 99.5 1.3E-13 2.8E-18 105.6 10.3 136 49-214 39-191 (229)
9 PRK08727 hypothetical protein; 99.4 9.3E-12 2E-16 95.6 13.2 156 27-214 21-192 (233)
10 PRK05642 DNA replication initi 99.4 1.1E-11 2.3E-16 95.3 12.1 135 50-214 46-196 (234)
11 PTZ00112 origin recognition co 99.4 2.5E-11 5.5E-16 105.8 15.1 188 23-214 752-966 (1164)
12 PF00308 Bac_DnaA: Bacterial d 99.3 1.3E-11 2.8E-16 93.8 10.6 165 27-214 10-196 (219)
13 PRK08084 DNA replication initi 99.3 2.1E-11 4.5E-16 93.8 11.6 156 26-214 23-197 (235)
14 COG1474 CDC6 Cdc6-related prot 99.3 9.9E-11 2.1E-15 95.1 15.6 181 22-207 13-214 (366)
15 PRK12402 replication factor C 99.3 5.3E-11 1.2E-15 96.4 13.1 190 22-213 11-213 (337)
16 COG2256 MGS1 ATPase related to 99.3 3.2E-11 6.9E-16 96.4 11.2 146 22-199 20-176 (436)
17 TIGR01242 26Sp45 26S proteasom 99.3 4.2E-11 9.1E-16 98.0 11.7 168 23-213 119-321 (364)
18 PRK07003 DNA polymerase III su 99.3 8.7E-11 1.9E-15 101.6 13.7 182 22-213 12-207 (830)
19 TIGR03015 pepcterm_ATPase puta 99.3 3.3E-10 7.2E-15 88.9 16.0 144 49-200 43-206 (269)
20 PF13173 AAA_14: AAA domain 99.3 1.9E-11 4.1E-16 85.3 7.8 120 49-191 2-127 (128)
21 TIGR03420 DnaA_homol_Hda DnaA 99.2 7E-11 1.5E-15 90.4 10.3 157 25-213 14-188 (226)
22 PF13191 AAA_16: AAA ATPase do 99.2 5.8E-11 1.3E-15 87.8 8.9 50 27-76 1-51 (185)
23 PRK04195 replication factor C 99.2 1.5E-10 3.2E-15 98.0 12.4 168 22-214 10-190 (482)
24 PLN03025 replication factor C 99.2 1.6E-10 3.5E-15 92.9 11.7 172 22-213 9-187 (319)
25 PRK14961 DNA polymerase III su 99.2 5.2E-10 1.1E-14 91.4 14.8 180 23-213 13-207 (363)
26 PRK09087 hypothetical protein; 99.2 8.1E-11 1.8E-15 89.8 9.1 125 49-214 44-183 (226)
27 TIGR00635 ruvB Holliday juncti 99.2 1.6E-10 3.5E-15 92.4 11.0 51 25-75 3-56 (305)
28 PRK14960 DNA polymerase III su 99.2 5.5E-10 1.2E-14 95.6 14.6 182 22-213 11-206 (702)
29 PRK00080 ruvB Holliday junctio 99.2 2.1E-10 4.6E-15 92.6 11.5 54 22-75 21-77 (328)
30 PRK14963 DNA polymerase III su 99.2 7.2E-10 1.6E-14 93.7 15.0 183 22-213 10-204 (504)
31 PRK04841 transcriptional regul 99.2 6.1E-10 1.3E-14 101.2 15.7 165 21-200 9-200 (903)
32 PRK14956 DNA polymerase III su 99.2 2.8E-10 6.1E-15 94.5 11.9 182 22-214 14-210 (484)
33 PRK12323 DNA polymerase III su 99.2 6.3E-10 1.4E-14 95.1 14.1 173 22-203 12-200 (700)
34 PRK14949 DNA polymerase III su 99.2 6.8E-10 1.5E-14 97.8 14.6 170 23-201 13-193 (944)
35 PF13401 AAA_22: AAA domain; P 99.2 8.6E-11 1.9E-15 82.1 7.5 114 48-168 3-125 (131)
36 PRK14088 dnaA chromosomal repl 99.2 5.6E-10 1.2E-14 93.3 13.5 166 27-215 107-294 (440)
37 cd00009 AAA The AAA+ (ATPases 99.2 7.5E-10 1.6E-14 78.3 12.4 123 29-170 1-131 (151)
38 PRK13342 recombination factor 99.2 3.6E-10 7.9E-15 93.9 12.1 146 22-199 8-164 (413)
39 PRK14087 dnaA chromosomal repl 99.2 6.3E-10 1.4E-14 93.1 13.3 167 27-214 117-307 (450)
40 PRK03992 proteasome-activating 99.2 1E-09 2.2E-14 90.4 14.0 167 24-213 129-330 (389)
41 PTZ00202 tuzin; Provisional 99.2 2.1E-09 4.7E-14 87.8 15.4 168 20-198 256-433 (550)
42 PRK14086 dnaA chromosomal repl 99.2 7E-10 1.5E-14 94.6 13.2 165 27-214 290-476 (617)
43 PRK00440 rfc replication facto 99.2 1.6E-09 3.5E-14 87.0 14.4 170 23-213 14-190 (319)
44 PRK00149 dnaA chromosomal repl 99.1 9.9E-10 2.1E-14 92.3 13.2 168 27-215 124-311 (450)
45 PRK14962 DNA polymerase III su 99.1 2.1E-09 4.5E-14 90.3 15.0 182 22-214 10-206 (472)
46 COG0593 DnaA ATPase involved i 99.1 1E-09 2.2E-14 89.5 12.6 168 25-214 87-274 (408)
47 PRK14951 DNA polymerase III su 99.1 2.6E-09 5.5E-14 92.0 15.7 182 23-213 13-212 (618)
48 PRK08691 DNA polymerase III su 99.1 1.2E-09 2.7E-14 94.1 13.3 182 22-213 12-207 (709)
49 PRK14957 DNA polymerase III su 99.1 3E-09 6.4E-14 90.4 15.4 169 23-200 13-192 (546)
50 KOG0989 Replication factor C, 99.1 5.7E-10 1.2E-14 86.4 10.1 173 22-214 32-218 (346)
51 PRK08903 DnaA regulatory inact 99.1 5.7E-10 1.2E-14 85.5 10.1 162 17-213 9-186 (227)
52 TIGR00362 DnaA chromosomal rep 99.1 1.7E-09 3.7E-14 89.8 13.1 167 27-214 112-298 (405)
53 COG2909 MalT ATP-dependent tra 99.1 4.3E-09 9.3E-14 91.3 15.8 167 21-199 14-207 (894)
54 TIGR02881 spore_V_K stage V sp 99.1 1.5E-09 3.3E-14 84.9 11.9 164 26-212 6-206 (261)
55 PRK07994 DNA polymerase III su 99.1 2.8E-09 6E-14 92.0 14.4 168 22-199 12-191 (647)
56 TIGR02639 ClpA ATP-dependent C 99.1 1.5E-09 3.3E-14 96.2 13.2 154 24-199 180-358 (731)
57 COG1121 ZnuC ABC-type Mn/Zn tr 99.1 3.4E-10 7.3E-15 86.6 7.8 59 115-175 141-205 (254)
58 PRK12422 chromosomal replicati 99.1 2.9E-09 6.3E-14 88.9 14.0 165 27-214 113-301 (445)
59 PF05496 RuvB_N: Holliday junc 99.1 3.7E-09 8E-14 79.2 12.8 162 22-214 20-209 (233)
60 TIGR02397 dnaX_nterm DNA polym 99.1 5.5E-09 1.2E-13 85.3 15.0 182 22-212 10-204 (355)
61 PRK14964 DNA polymerase III su 99.1 4E-09 8.6E-14 88.5 14.3 168 22-213 9-204 (491)
62 PRK06645 DNA polymerase III su 99.1 5.1E-09 1.1E-13 88.4 14.9 184 22-214 17-217 (507)
63 PRK06620 hypothetical protein; 99.1 1.4E-09 3E-14 82.4 10.1 149 23-214 14-177 (214)
64 PRK14958 DNA polymerase III su 99.1 4.4E-09 9.6E-14 89.2 13.8 172 22-203 12-195 (509)
65 TIGR03345 VI_ClpV1 type VI sec 99.1 5.2E-09 1.1E-13 93.8 14.4 154 23-198 184-362 (852)
66 PRK14969 DNA polymerase III su 99.0 4.9E-09 1.1E-13 89.4 13.6 171 22-202 12-194 (527)
67 PTZ00454 26S protease regulato 99.0 6.2E-09 1.3E-13 85.7 13.5 168 23-213 142-344 (398)
68 PRK13341 recombination factor 99.0 3.4E-09 7.5E-14 93.0 12.4 147 22-200 24-182 (725)
69 PRK14952 DNA polymerase III su 99.0 1.5E-08 3.3E-13 86.9 15.8 172 22-203 9-194 (584)
70 KOG2028 ATPase related to the 99.0 2.3E-09 5E-14 85.1 9.4 151 22-199 134-294 (554)
71 PRK07764 DNA polymerase III su 99.0 1.1E-08 2.4E-13 90.9 14.6 166 22-202 11-195 (824)
72 PRK09112 DNA polymerase III su 99.0 4.7E-08 1E-12 79.3 16.5 170 20-199 17-213 (351)
73 PRK07940 DNA polymerase III su 99.0 2.7E-08 5.8E-13 81.8 15.2 162 26-198 5-188 (394)
74 COG1120 FepC ABC-type cobalami 99.0 1.3E-09 2.7E-14 83.8 6.8 68 115-184 140-213 (258)
75 PRK10865 protein disaggregatio 99.0 1.3E-08 2.8E-13 91.5 14.2 154 24-199 176-354 (857)
76 TIGR00678 holB DNA polymerase 99.0 4.7E-08 1E-12 72.7 15.1 80 130-213 95-178 (188)
77 CHL00095 clpC Clp protease ATP 99.0 5.2E-09 1.1E-13 93.8 11.4 150 26-197 179-352 (821)
78 PRK05896 DNA polymerase III su 99.0 1.5E-08 3.3E-13 86.5 13.5 181 22-212 12-206 (605)
79 PRK09111 DNA polymerase III su 99.0 2.5E-08 5.4E-13 86.0 14.7 172 22-203 20-208 (598)
80 PTZ00361 26 proteosome regulat 99.0 6.2E-09 1.3E-13 86.4 10.6 157 23-202 180-370 (438)
81 PRK05564 DNA polymerase III su 99.0 5.8E-08 1.3E-12 77.9 15.9 153 26-199 4-165 (313)
82 PRK07471 DNA polymerase III su 99.0 4.8E-08 1E-12 79.6 15.5 176 21-199 14-213 (365)
83 TIGR01241 FtsH_fam ATP-depende 99.0 1.3E-08 2.8E-13 86.6 12.7 168 24-214 53-254 (495)
84 TIGR03689 pup_AAA proteasome A 98.9 4.6E-08 1E-12 82.5 15.3 162 24-200 180-379 (512)
85 PRK14970 DNA polymerase III su 98.9 1.5E-08 3.4E-13 83.0 12.3 170 22-213 13-196 (367)
86 COG0488 Uup ATPase components 98.9 5.1E-09 1.1E-13 88.8 9.6 133 47-185 346-511 (530)
87 PRK14959 DNA polymerase III su 98.9 2.5E-08 5.4E-13 85.6 13.5 180 22-213 12-207 (624)
88 TIGR03346 chaperone_ClpB ATP-d 98.9 2.3E-08 4.9E-13 90.1 13.8 154 24-198 171-348 (852)
89 PHA02544 44 clamp loader, smal 98.9 2.1E-08 4.6E-13 80.6 12.4 149 22-196 17-170 (316)
90 CHL00176 ftsH cell division pr 98.9 1.7E-08 3.8E-13 87.5 12.3 166 25-213 182-381 (638)
91 PRK14955 DNA polymerase III su 98.9 2.3E-08 5.1E-13 82.7 12.5 174 22-200 12-200 (397)
92 COG3899 Predicted ATPase [Gene 98.9 2.4E-08 5.2E-13 89.6 13.4 50 27-76 1-51 (849)
93 CHL00181 cbbX CbbX; Provisiona 98.9 1E-07 2.2E-12 75.4 15.3 152 27-201 24-211 (287)
94 PRK05563 DNA polymerase III su 98.9 7.8E-08 1.7E-12 82.7 15.5 182 22-213 12-207 (559)
95 PRK14953 DNA polymerase III su 98.9 8.7E-08 1.9E-12 80.9 15.4 178 22-213 12-207 (486)
96 CHL00195 ycf46 Ycf46; Provisio 98.9 5.2E-08 1.1E-12 82.1 13.8 154 25-201 227-407 (489)
97 COG1222 RPT1 ATP-dependent 26S 98.9 4.1E-08 8.8E-13 77.8 12.1 166 26-214 151-351 (406)
98 PRK14950 DNA polymerase III su 98.9 6.2E-08 1.3E-12 83.9 14.4 182 22-213 12-208 (585)
99 PRK08451 DNA polymerase III su 98.9 1.2E-07 2.6E-12 80.5 15.4 179 22-213 10-205 (535)
100 PRK06305 DNA polymerase III su 98.9 1E-07 2.3E-12 79.9 15.0 182 22-213 13-209 (451)
101 PRK11034 clpA ATP-dependent Cl 98.9 2.8E-08 6.1E-13 87.7 11.9 153 26-199 186-362 (758)
102 cd03216 ABC_Carb_Monos_I This 98.9 7.8E-09 1.7E-13 75.1 7.1 126 47-183 24-155 (163)
103 cd03223 ABCD_peroxisomal_ALDP 98.9 2.2E-08 4.8E-13 73.0 9.5 126 47-184 25-161 (166)
104 COG0488 Uup ATPase components 98.9 9.9E-09 2.1E-13 87.1 8.6 62 118-185 158-225 (530)
105 cd03222 ABC_RNaseL_inhibitor T 98.9 1.1E-08 2.3E-13 75.2 7.6 110 47-175 23-138 (177)
106 COG1136 SalX ABC-type antimicr 98.9 6.1E-09 1.3E-13 78.5 6.3 69 113-184 142-216 (226)
107 TIGR02880 cbbX_cfxQ probable R 98.9 1E-07 2.2E-12 75.4 13.5 153 27-200 23-209 (284)
108 PRK07133 DNA polymerase III su 98.9 1.1E-07 2.5E-12 82.9 14.8 170 22-201 14-192 (725)
109 PF00004 AAA: ATPase family as 98.8 1.6E-08 3.5E-13 70.4 7.8 23 52-74 1-23 (132)
110 PRK14954 DNA polymerase III su 98.8 1.1E-07 2.4E-12 82.2 14.4 188 22-213 12-215 (620)
111 COG1116 TauB ABC-type nitrate/ 98.8 2.3E-08 5.1E-13 75.8 9.0 127 47-175 27-197 (248)
112 cd03214 ABC_Iron-Siderophores_ 98.8 1.8E-08 3.9E-13 74.4 8.1 132 47-183 23-171 (180)
113 PRK06647 DNA polymerase III su 98.8 1.9E-07 4.2E-12 80.2 15.4 179 22-213 12-207 (563)
114 PRK14965 DNA polymerase III su 98.8 9.5E-08 2.1E-12 82.5 13.6 182 22-213 12-207 (576)
115 TIGR01243 CDC48 AAA family ATP 98.8 9.3E-08 2E-12 85.1 13.9 167 25-214 452-651 (733)
116 cd03230 ABC_DR_subfamily_A Thi 98.8 2.2E-08 4.8E-13 73.4 8.4 126 47-183 24-168 (173)
117 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.8 3E-08 6.5E-13 70.5 8.7 111 47-183 24-140 (144)
118 COG4555 NatA ABC-type Na+ tran 98.8 5.5E-08 1.2E-12 71.4 10.0 58 121-181 141-204 (245)
119 cd03238 ABC_UvrA The excision 98.8 3.1E-08 6.7E-13 72.7 8.9 129 47-184 19-162 (176)
120 COG0396 sufC Cysteine desulfur 98.8 1E-08 2.2E-13 76.6 6.2 62 117-180 148-215 (251)
121 PRK14948 DNA polymerase III su 98.8 1E-07 2.3E-12 82.6 13.3 170 23-201 13-195 (620)
122 KOG0733 Nuclear AAA ATPase (VC 98.8 1.5E-07 3.3E-12 79.3 13.5 167 25-214 189-390 (802)
123 COG0466 Lon ATP-dependent Lon 98.8 6.5E-08 1.4E-12 82.8 11.1 160 25-199 322-508 (782)
124 KOG2227 Pre-initiation complex 98.8 4E-07 8.6E-12 74.6 14.9 186 10-202 136-341 (529)
125 COG1124 DppF ABC-type dipeptid 98.8 4.9E-08 1.1E-12 73.6 8.8 138 37-175 21-208 (252)
126 cd03246 ABCC_Protease_Secretio 98.8 3.8E-08 8.1E-13 72.2 8.0 130 47-184 26-169 (173)
127 PRK14971 DNA polymerase III su 98.8 4E-07 8.6E-12 79.1 15.5 173 22-203 13-197 (614)
128 cd03228 ABCC_MRP_Like The MRP 98.8 5.7E-08 1.2E-12 71.1 8.9 128 47-184 26-168 (171)
129 TIGR01243 CDC48 AAA family ATP 98.8 2E-07 4.4E-12 83.0 13.9 154 24-200 176-360 (733)
130 cd03229 ABC_Class3 This class 98.8 2.4E-08 5.2E-13 73.6 6.7 133 47-183 24-174 (178)
131 COG2812 DnaX DNA polymerase II 98.8 8.4E-08 1.8E-12 80.6 10.6 164 25-203 15-195 (515)
132 cd03215 ABC_Carb_Monos_II This 98.8 7.3E-08 1.6E-12 71.3 9.2 127 47-183 24-177 (182)
133 TIGR00602 rad24 checkpoint pro 98.8 1.4E-07 3E-12 81.7 12.0 53 22-74 80-135 (637)
134 PRK08181 transposase; Validate 98.7 6.8E-08 1.5E-12 75.4 9.1 35 50-84 107-141 (269)
135 TIGR00763 lon ATP-dependent pr 98.7 2.4E-07 5.1E-12 82.9 13.6 158 27-199 321-505 (775)
136 cd03247 ABCC_cytochrome_bd The 98.7 1E-07 2.3E-12 70.2 9.5 126 47-184 26-170 (178)
137 PRK07399 DNA polymerase III su 98.7 6E-07 1.3E-11 71.9 14.4 167 26-199 4-195 (314)
138 PF07693 KAP_NTPase: KAP famil 98.7 7.1E-07 1.5E-11 72.0 15.0 46 31-76 1-47 (325)
139 PF05673 DUF815: Protein of un 98.7 3.2E-07 7E-12 69.8 11.9 56 21-76 22-79 (249)
140 cd03237 ABC_RNaseL_inhibitor_d 98.7 6.4E-08 1.4E-12 75.0 8.2 127 48-175 24-182 (246)
141 cd00267 ABC_ATPase ABC (ATP-bi 98.7 4.7E-08 1E-12 70.5 6.9 125 48-184 24-154 (157)
142 cd03213 ABCG_EPDR ABCG transpo 98.7 1.5E-07 3.3E-12 70.3 9.8 130 47-183 33-185 (194)
143 COG4608 AppF ABC-type oligopep 98.7 6.6E-08 1.4E-12 74.3 7.8 127 47-175 37-176 (268)
144 PRK08116 hypothetical protein; 98.7 1.8E-07 3.9E-12 73.3 10.4 35 49-83 114-148 (268)
145 TIGR00960 3a0501s02 Type II (G 98.7 1.2E-07 2.5E-12 72.1 9.1 62 119-183 144-211 (216)
146 COG1126 GlnQ ABC-type polar am 98.7 2.7E-07 5.8E-12 68.6 10.2 62 112-175 135-202 (240)
147 smart00382 AAA ATPases associa 98.7 1.8E-07 3.8E-12 65.4 9.1 36 49-84 2-37 (148)
148 KOG2004 Mitochondrial ATP-depe 98.7 2.6E-07 5.6E-12 79.2 11.4 53 25-77 410-466 (906)
149 PRK13539 cytochrome c biogenes 98.7 1.1E-07 2.3E-12 71.9 8.4 63 121-188 135-203 (207)
150 PRK13543 cytochrome c biogenes 98.7 1.3E-07 2.9E-12 71.7 8.8 62 119-183 143-210 (214)
151 cd03232 ABC_PDR_domain2 The pl 98.7 2.2E-07 4.7E-12 69.3 9.8 132 47-184 31-183 (192)
152 COG2884 FtsE Predicted ATPase 98.7 1.2E-07 2.6E-12 69.0 7.8 60 114-175 138-203 (223)
153 TIGR01188 drrA daunorubicin re 98.7 1.4E-07 3.1E-12 75.3 9.1 52 121-174 132-189 (302)
154 PRK07952 DNA replication prote 98.7 1.9E-07 4.2E-12 71.9 9.3 49 35-83 85-133 (244)
155 cd03269 ABC_putative_ATPase Th 98.7 1.7E-07 3.6E-12 70.9 8.9 60 121-183 136-201 (210)
156 cd03224 ABC_TM1139_LivF_branch 98.7 1.2E-07 2.5E-12 72.4 7.9 61 120-183 139-205 (222)
157 PRK12377 putative replication 98.7 8.7E-08 1.9E-12 74.0 7.1 36 49-84 101-136 (248)
158 PF14516 AAA_35: AAA-like doma 98.7 3.1E-06 6.8E-11 68.4 16.5 175 21-199 6-214 (331)
159 PRK06835 DNA replication prote 98.7 1.5E-07 3.2E-12 75.7 8.7 36 49-84 183-218 (329)
160 PRK11248 tauB taurine transpor 98.7 1.8E-07 3.9E-12 73.0 9.0 61 121-183 136-202 (255)
161 TIGR02903 spore_lon_C ATP-depe 98.6 3.1E-07 6.8E-12 79.9 11.2 51 22-74 150-200 (615)
162 COG2255 RuvB Holliday junction 98.6 5.9E-07 1.3E-11 69.3 11.3 162 22-214 22-211 (332)
163 COG1223 Predicted ATPase (AAA+ 98.6 9.1E-07 2E-11 67.6 12.1 154 25-201 120-299 (368)
164 COG1131 CcmA ABC-type multidru 98.6 1.6E-07 3.4E-12 74.6 8.5 53 121-175 144-203 (293)
165 cd03226 ABC_cobalt_CbiO_domain 98.6 1.3E-07 2.8E-12 71.3 7.7 61 120-183 133-199 (205)
166 PRK06921 hypothetical protein; 98.6 8.1E-08 1.8E-12 75.1 6.6 37 48-84 116-153 (266)
167 cd03235 ABC_Metallic_Cations A 98.6 2.4E-07 5.3E-12 70.2 9.1 63 119-184 138-206 (213)
168 cd03268 ABC_BcrA_bacitracin_re 98.6 2.8E-07 6E-12 69.6 9.3 60 121-183 134-199 (208)
169 cd03259 ABC_Carb_Solutes_like 98.6 1.8E-07 3.9E-12 70.9 8.3 62 120-183 137-204 (213)
170 KOG2543 Origin recognition com 98.6 1.1E-06 2.5E-11 70.3 12.8 170 24-200 4-194 (438)
171 cd03225 ABC_cobalt_CbiO_domain 98.6 1.4E-07 3E-12 71.5 7.5 61 120-183 141-207 (211)
172 cd03265 ABC_DrrA DrrA is the A 98.6 2.8E-07 6.1E-12 70.2 9.3 61 121-183 139-205 (220)
173 KOG0734 AAA+-type ATPase conta 98.6 7.5E-07 1.6E-11 74.2 12.0 150 27-199 305-484 (752)
174 TIGR02324 CP_lyasePhnL phospho 98.6 2.9E-07 6.3E-12 70.3 9.3 62 121-185 157-224 (224)
175 cd03261 ABC_Org_Solvent_Resist 98.6 2.5E-07 5.3E-12 71.3 8.7 62 120-183 143-210 (235)
176 TIGR02673 FtsE cell division A 98.6 3.4E-07 7.3E-12 69.5 9.3 61 120-183 144-210 (214)
177 KOG0733 Nuclear AAA ATPase (VC 98.6 7.4E-07 1.6E-11 75.3 11.8 171 21-214 505-710 (802)
178 cd03292 ABC_FtsE_transporter F 98.6 3.5E-07 7.7E-12 69.3 9.4 60 121-183 144-209 (214)
179 PLN00020 ribulose bisphosphate 98.6 8.9E-07 1.9E-11 71.3 11.8 146 47-214 146-326 (413)
180 PF01695 IstB_IS21: IstB-like 98.6 6.8E-08 1.5E-12 71.1 5.1 37 48-84 46-82 (178)
181 COG0542 clpA ATP-binding subun 98.6 3.2E-07 7E-12 80.2 10.0 158 25-198 169-345 (786)
182 cd03293 ABC_NrtD_SsuB_transpor 98.6 2.4E-07 5.3E-12 70.6 8.3 62 120-183 138-205 (220)
183 PRK11124 artP arginine transpo 98.6 3.2E-07 6.9E-12 71.0 9.0 54 120-175 148-207 (242)
184 PRK11247 ssuB aliphatic sulfon 98.6 2.3E-07 5E-12 72.4 8.2 28 47-74 36-63 (257)
185 cd03217 ABC_FeS_Assembly ABC-t 98.6 2.3E-07 5E-12 69.7 8.0 122 47-174 24-169 (200)
186 PRK13537 nodulation ABC transp 98.6 3.2E-07 6.9E-12 73.4 9.2 52 121-174 146-203 (306)
187 cd03262 ABC_HisP_GlnQ_permease 98.6 3.3E-07 7.2E-12 69.4 8.8 60 121-183 143-208 (213)
188 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.6 4E-07 8.6E-12 69.3 9.3 62 120-184 147-214 (218)
189 cd03233 ABC_PDR_domain1 The pl 98.6 2.6E-07 5.7E-12 69.5 8.1 28 47-74 31-58 (202)
190 PRK08058 DNA polymerase III su 98.6 3E-06 6.5E-11 68.5 14.7 160 27-198 6-181 (329)
191 TIGR02315 ABC_phnC phosphonate 98.6 2.9E-07 6.2E-12 71.2 8.5 62 120-183 152-219 (243)
192 PRK09544 znuC high-affinity zi 98.6 2E-07 4.3E-12 72.5 7.5 128 47-175 28-187 (251)
193 cd03263 ABC_subfamily_A The AB 98.6 5E-07 1.1E-11 68.8 9.6 59 121-183 141-205 (220)
194 TIGR03740 galliderm_ABC gallid 98.6 4.5E-07 9.9E-12 69.2 9.3 53 121-175 132-190 (223)
195 cd03218 ABC_YhbG The ABC trans 98.6 4.9E-07 1.1E-11 69.4 9.6 60 121-183 141-206 (232)
196 PRK10908 cell division protein 98.6 4.3E-07 9.3E-12 69.3 9.2 62 120-184 144-211 (222)
197 cd03250 ABCC_MRP_domain1 Domai 98.6 9.1E-07 2E-11 66.6 10.8 133 47-183 29-200 (204)
198 cd03301 ABC_MalK_N The N-termi 98.6 3.2E-07 6.8E-12 69.6 8.3 61 121-183 138-204 (213)
199 PRK11819 putative ABC transpor 98.6 6E-07 1.3E-11 77.6 11.0 51 120-175 170-226 (556)
200 PRK05707 DNA polymerase III su 98.6 3.4E-06 7.4E-11 68.0 14.6 70 130-199 105-178 (328)
201 TIGR02640 gas_vesic_GvpN gas v 98.6 7.4E-07 1.6E-11 69.7 10.6 24 50-73 22-45 (262)
202 cd03266 ABC_NatA_sodium_export 98.6 4.2E-07 9E-12 69.2 9.0 60 121-183 144-209 (218)
203 COG1373 Predicted ATPase (AAA+ 98.6 8.3E-07 1.8E-11 73.4 11.3 117 51-193 39-161 (398)
204 PRK06526 transposase; Provisio 98.6 5E-07 1.1E-11 70.2 9.2 34 49-82 98-131 (254)
205 TIGR01288 nodI ATP-binding ABC 98.6 3.9E-07 8.5E-12 72.8 8.9 53 121-175 143-201 (303)
206 PRK10787 DNA-binding ATP-depen 98.6 7.4E-07 1.6E-11 79.4 11.3 158 26-199 322-506 (784)
207 cd03258 ABC_MetN_methionine_tr 98.6 5E-07 1.1E-11 69.5 9.0 62 120-183 147-214 (233)
208 COG3267 ExeA Type II secretory 98.6 6.6E-06 1.4E-10 62.7 14.6 185 14-206 16-220 (269)
209 COG4133 CcmA ABC-type transpor 98.6 6.6E-08 1.4E-12 70.2 3.8 122 48-171 27-192 (209)
210 TIGR01277 thiQ thiamine ABC tr 98.6 5.2E-07 1.1E-11 68.4 8.8 61 121-183 136-202 (213)
211 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 98.5 5E-07 1.1E-11 69.1 8.7 60 121-183 150-215 (224)
212 COG4619 ABC-type uncharacteriz 98.5 1.7E-06 3.7E-11 61.9 10.6 134 47-185 27-209 (223)
213 TIGR03410 urea_trans_UrtE urea 98.5 3.4E-07 7.5E-12 70.2 7.8 55 120-175 138-198 (230)
214 COG1484 DnaC DNA replication p 98.5 5.2E-07 1.1E-11 70.1 8.7 37 48-84 104-140 (254)
215 PRK13546 teichoic acids export 98.5 4.5E-07 9.7E-12 71.0 8.3 54 120-175 150-209 (264)
216 PRK11264 putative amino-acid A 98.5 7.1E-07 1.5E-11 69.3 9.4 60 121-183 152-217 (250)
217 TIGR01184 ntrCD nitrate transp 98.5 2.1E-07 4.5E-12 71.5 6.3 62 120-183 121-188 (230)
218 cd03296 ABC_CysA_sulfate_impor 98.5 4.4E-07 9.6E-12 70.0 8.2 62 120-183 143-210 (239)
219 KOG0730 AAA+-type ATPase [Post 98.5 1.6E-06 3.4E-11 73.9 11.9 170 22-214 429-631 (693)
220 PRK13536 nodulation factor exp 98.5 1.9E-07 4.2E-12 75.6 6.3 53 121-175 180-238 (340)
221 PRK11614 livF leucine/isoleuci 98.5 3.6E-07 7.8E-12 70.5 7.4 61 120-183 144-210 (237)
222 PRK13538 cytochrome c biogenes 98.5 8.3E-07 1.8E-11 66.9 9.2 54 120-175 136-195 (204)
223 cd01128 rho_factor Transcripti 98.5 1.6E-07 3.4E-12 72.7 5.4 93 47-141 14-113 (249)
224 TIGR03522 GldA_ABC_ATP gliding 98.5 7.3E-07 1.6E-11 71.2 9.3 51 121-174 141-197 (301)
225 TIGR03771 anch_rpt_ABC anchore 98.5 8.3E-07 1.8E-11 67.8 9.3 54 120-175 120-179 (223)
226 PRK13409 putative ATPase RIL; 98.5 3.9E-07 8.5E-12 79.0 8.3 128 47-175 363-520 (590)
227 cd03298 ABC_ThiQ_thiamine_tran 98.5 4.7E-07 1E-11 68.5 7.8 62 120-183 135-202 (211)
228 cd03294 ABC_Pro_Gly_Bertaine T 98.5 6.9E-07 1.5E-11 70.2 8.9 56 119-175 166-227 (269)
229 KOG0744 AAA+-type ATPase [Post 98.5 1.2E-06 2.5E-11 68.9 9.8 136 49-199 177-340 (423)
230 cd03267 ABC_NatA_like Similar 98.5 6.9E-07 1.5E-11 68.9 8.7 61 121-183 161-227 (236)
231 KOG0738 AAA+-type ATPase [Post 98.5 2.4E-06 5.3E-11 68.7 11.8 70 5-77 194-273 (491)
232 cd03264 ABC_drug_resistance_li 98.5 1.1E-06 2.3E-11 66.6 9.6 60 120-183 137-202 (211)
233 PRK09183 transposase/IS protei 98.5 5.1E-07 1.1E-11 70.5 8.0 36 48-83 101-136 (259)
234 PRK11000 maltose/maltodextrin 98.5 5.1E-07 1.1E-11 74.1 8.3 57 118-175 138-200 (369)
235 cd03256 ABC_PhnC_transporter A 98.5 5.5E-07 1.2E-11 69.6 8.1 62 120-183 151-218 (241)
236 TIGR03719 ABC_ABC_ChvD ATP-bin 98.5 1.2E-06 2.5E-11 75.8 10.9 51 120-175 168-224 (552)
237 COG1122 CbiO ABC-type cobalt t 98.5 6.1E-07 1.3E-11 68.7 8.1 68 114-183 139-212 (235)
238 COG1127 Ttg2A ABC-type transpo 98.5 1.1E-06 2.5E-11 66.2 9.3 56 119-175 151-212 (263)
239 TIGR03873 F420-0_ABC_ATP propo 98.5 8.9E-07 1.9E-11 69.1 9.1 53 121-175 145-203 (256)
240 COG0470 HolB ATPase involved i 98.5 5.3E-06 1.2E-10 66.7 13.9 150 27-194 2-176 (325)
241 cd03231 ABC_CcmA_heme_exporter 98.5 5.1E-07 1.1E-11 67.8 7.5 61 119-182 131-197 (201)
242 PRK11153 metN DL-methionine tr 98.5 7.1E-07 1.5E-11 72.5 8.7 57 118-175 145-207 (343)
243 PRK10895 lipopolysaccharide AB 98.5 1E-06 2.3E-11 68.0 9.3 28 47-74 27-54 (241)
244 PRK13647 cbiO cobalt transport 98.5 3.6E-07 7.9E-12 72.0 6.8 54 119-174 144-203 (274)
245 PRK15439 autoinducer 2 ABC tra 98.5 4.6E-07 1E-11 77.5 7.9 56 118-175 145-206 (510)
246 cd03297 ABC_ModC_molybdenum_tr 98.5 9E-07 2E-11 67.1 8.7 62 120-183 138-205 (214)
247 cd01131 PilT Pilus retraction 98.5 6.4E-07 1.4E-11 67.2 7.8 112 50-173 2-113 (198)
248 PF10443 RNA12: RNA12 protein; 98.5 2.2E-06 4.9E-11 70.1 11.4 39 31-71 1-40 (431)
249 COG4152 ABC-type uncharacteriz 98.5 6.4E-07 1.4E-11 67.8 7.6 127 47-175 26-196 (300)
250 KOG2228 Origin recognition com 98.5 5.6E-06 1.2E-10 65.5 13.0 174 25-200 23-220 (408)
251 PRK10619 histidine/lysine/argi 98.5 1E-06 2.2E-11 68.8 9.1 61 120-183 159-225 (257)
252 PRK09493 glnQ glutamine ABC tr 98.5 1.2E-06 2.6E-11 67.7 9.4 60 121-183 144-209 (240)
253 PRK14259 phosphate ABC transpo 98.5 1.9E-06 4.2E-11 67.7 10.6 60 121-184 162-227 (269)
254 TIGR02639 ClpA ATP-dependent C 98.5 5.9E-06 1.3E-10 73.7 14.8 50 25-74 453-509 (731)
255 PRK10865 protein disaggregatio 98.5 6.2E-06 1.3E-10 74.5 15.0 49 26-74 568-623 (857)
256 PRK11144 modC molybdate transp 98.5 7.6E-07 1.6E-11 72.6 8.5 57 118-175 133-195 (352)
257 COG0464 SpoVK ATPases of the A 98.5 1.5E-06 3.2E-11 74.2 10.5 153 26-201 242-425 (494)
258 PRK15177 Vi polysaccharide exp 98.5 1.3E-06 2.8E-11 66.2 9.2 28 47-74 11-38 (213)
259 PRK10771 thiQ thiamine transpo 98.5 1.3E-06 2.9E-11 67.0 9.4 62 120-183 136-203 (232)
260 cd03219 ABC_Mj1267_LivG_branch 98.5 1E-06 2.2E-11 67.9 8.7 60 121-183 151-216 (236)
261 PRK10584 putative ABC transpor 98.5 1.2E-06 2.5E-11 67.2 9.0 62 120-184 153-220 (228)
262 PRK11300 livG leucine/isoleuci 98.5 1.2E-06 2.6E-11 68.3 9.1 62 120-183 160-227 (255)
263 COG1118 CysA ABC-type sulfate/ 98.5 1.6E-06 3.5E-11 67.7 9.6 63 112-175 136-204 (345)
264 PRK11147 ABC transporter ATPas 98.5 1.1E-06 2.5E-11 77.0 10.0 58 120-183 163-226 (635)
265 TIGR02314 ABC_MetN D-methionin 98.5 9.5E-07 2.1E-11 71.6 8.8 57 118-175 145-207 (343)
266 TIGR03346 chaperone_ClpB ATP-d 98.5 6.4E-06 1.4E-10 74.6 14.8 51 25-75 564-621 (852)
267 TIGR00972 3a0107s01c2 phosphat 98.5 1.6E-06 3.5E-11 67.3 9.7 28 47-74 25-52 (247)
268 PF14532 Sigma54_activ_2: Sigm 98.5 9.3E-07 2E-11 62.3 7.6 46 29-74 1-46 (138)
269 PRK13540 cytochrome c biogenes 98.5 9.3E-07 2E-11 66.4 8.1 55 119-175 133-193 (200)
270 PRK13651 cobalt transporter AT 98.5 9E-07 1.9E-11 70.8 8.4 53 120-174 172-230 (305)
271 TIGR01166 cbiO cobalt transpor 98.5 4.3E-07 9.4E-12 67.6 6.2 28 47-74 16-43 (190)
272 TIGR02211 LolD_lipo_ex lipopro 98.5 1.6E-06 3.5E-11 66.0 9.5 62 120-184 148-215 (221)
273 PF13177 DNA_pol3_delta2: DNA 98.5 5.3E-06 1.2E-10 60.1 11.7 133 30-187 1-162 (162)
274 PRK13545 tagH teichoic acids e 98.5 1.1E-06 2.3E-11 74.4 9.0 126 47-175 48-209 (549)
275 PRK10636 putative ABC transpor 98.5 1.5E-06 3.3E-11 76.2 10.4 58 120-183 156-219 (638)
276 TIGR03258 PhnT 2-aminoethylpho 98.5 1.1E-06 2.3E-11 71.9 8.9 58 118-175 142-205 (362)
277 cd03253 ABCC_ATM1_transporter 98.5 1.8E-06 4E-11 66.4 9.8 61 118-183 142-208 (236)
278 PRK15064 ABC transporter ATP-b 98.5 2E-06 4.3E-11 74.0 10.9 53 118-175 160-218 (530)
279 cd03248 ABCC_TAP TAP, the Tran 98.5 1.1E-06 2.4E-11 67.2 8.4 60 120-184 157-222 (226)
280 PRK13638 cbiO cobalt transport 98.5 9.6E-07 2.1E-11 69.5 8.2 54 120-175 143-202 (271)
281 cd03281 ABC_MSH5_euk MutS5 hom 98.4 2.3E-07 5E-12 70.3 4.5 23 49-71 29-51 (213)
282 PRK14247 phosphate ABC transpo 98.4 1.7E-06 3.6E-11 67.3 9.4 59 121-183 154-218 (250)
283 cd03300 ABC_PotA_N PotA is an 98.4 1.3E-06 2.8E-11 67.1 8.7 61 121-183 138-204 (232)
284 PRK13643 cbiO cobalt transport 98.4 1.3E-06 2.8E-11 69.4 8.9 54 119-174 150-209 (288)
285 PRK10575 iron-hydroxamate tran 98.4 1.4E-06 2.9E-11 68.4 8.9 56 119-175 153-214 (265)
286 PRK08939 primosomal protein Dn 98.4 1.4E-06 3E-11 69.5 9.0 55 30-84 135-191 (306)
287 PRK10636 putative ABC transpor 98.4 1.4E-06 3.1E-11 76.4 9.9 124 47-175 336-493 (638)
288 PRK09580 sufC cysteine desulfu 98.4 2.1E-06 4.6E-11 66.6 9.9 55 119-175 151-211 (248)
289 cd03295 ABC_OpuCA_Osmoprotecti 98.4 1.4E-06 3.1E-11 67.3 8.8 28 47-74 25-52 (242)
290 KOG1514 Origin recognition com 98.4 8.3E-06 1.8E-10 70.0 13.9 170 24-202 394-592 (767)
291 PRK10733 hflB ATP-dependent me 98.4 2.8E-06 6E-11 74.5 11.5 153 26-201 152-337 (644)
292 COG4586 ABC-type uncharacteriz 98.4 2.1E-06 4.6E-11 66.0 9.3 145 26-173 27-221 (325)
293 cd03251 ABCC_MsbA MsbA is an e 98.4 1E-06 2.3E-11 67.7 7.9 60 119-183 144-209 (234)
294 cd03369 ABCC_NFT1 Domain 2 of 98.4 3.1E-06 6.8E-11 63.8 10.4 61 119-184 131-197 (207)
295 TIGR03864 PQQ_ABC_ATP ABC tran 98.4 1.7E-06 3.6E-11 66.7 8.9 61 121-184 140-206 (236)
296 PRK11331 5-methylcytosine-spec 98.4 1.1E-06 2.3E-11 72.8 8.2 55 26-84 175-231 (459)
297 TIGR03608 L_ocin_972_ABC putat 98.4 1.7E-06 3.8E-11 65.1 8.8 51 121-173 142-198 (206)
298 PRK14250 phosphate ABC transpo 98.4 1.8E-06 3.9E-11 66.7 9.1 55 120-175 138-198 (241)
299 PRK13541 cytochrome c biogenes 98.4 1.6E-06 3.5E-11 64.8 8.6 28 47-74 24-51 (195)
300 TIGR01978 sufC FeS assembly AT 98.4 2.1E-06 4.6E-11 66.4 9.5 63 119-183 150-218 (243)
301 TIGR03005 ectoine_ehuA ectoine 98.4 1.7E-06 3.8E-11 67.3 9.1 28 47-74 24-51 (252)
302 PRK11650 ugpC glycerol-3-phosp 98.4 5.6E-07 1.2E-11 73.4 6.5 58 117-175 138-201 (356)
303 PRK11231 fecE iron-dicitrate t 98.4 2.4E-06 5.1E-11 66.7 9.7 54 120-175 145-204 (255)
304 PRK15056 manganese/iron transp 98.4 1.9E-06 4.2E-11 67.8 9.3 55 119-175 148-208 (272)
305 cd03245 ABCC_bacteriocin_expor 98.4 3.9E-06 8.6E-11 63.9 10.7 61 119-184 146-212 (220)
306 TIGR02770 nickel_nikD nickel i 98.4 1.7E-06 3.6E-11 66.5 8.6 28 48-75 11-38 (230)
307 TIGR03411 urea_trans_UrtD urea 98.4 3.4E-06 7.4E-11 65.2 10.4 60 120-183 150-215 (242)
308 PRK13652 cbiO cobalt transport 98.4 1.5E-06 3.3E-11 68.6 8.5 55 119-174 143-203 (277)
309 PRK14249 phosphate ABC transpo 98.4 2.5E-06 5.5E-11 66.3 9.7 53 120-175 154-212 (251)
310 PRK09536 btuD corrinoid ABC tr 98.4 3.7E-07 8E-12 75.4 5.2 56 118-175 144-205 (402)
311 PRK13641 cbiO cobalt transport 98.4 1.7E-06 3.7E-11 68.7 8.8 54 120-175 152-211 (287)
312 PRK10536 hypothetical protein; 98.4 1.6E-06 3.5E-11 66.8 8.2 44 25-72 54-97 (262)
313 PRK11831 putative ABC transpor 98.4 1.6E-06 3.5E-11 68.1 8.5 28 47-74 31-58 (269)
314 PRK10938 putative molybdenum t 98.4 9.6E-07 2.1E-11 75.2 7.8 56 118-175 140-201 (490)
315 KOG0652 26S proteasome regulat 98.4 2.2E-05 4.7E-10 60.3 14.1 170 23-215 168-372 (424)
316 cd03244 ABCC_MRP_domain2 Domai 98.4 5.2E-06 1.1E-10 63.3 11.1 61 119-184 145-211 (221)
317 COG3839 MalK ABC-type sugar tr 98.4 1.3E-06 2.8E-11 70.0 7.9 59 112-175 132-200 (338)
318 TIGR02142 modC_ABC molybdenum 98.4 1.6E-06 3.4E-11 70.8 8.6 56 119-175 137-198 (354)
319 TIGR00968 3a0106s01 sulfate AB 98.4 1.9E-06 4.2E-11 66.4 8.7 27 47-73 24-50 (237)
320 TIGR03265 PhnT2 putative 2-ami 98.4 1.5E-06 3.4E-11 70.8 8.4 58 117-175 138-201 (353)
321 cd03252 ABCC_Hemolysin The ABC 98.4 1.7E-06 3.7E-11 66.6 8.3 59 120-183 145-209 (237)
322 cd01120 RecA-like_NTPases RecA 98.4 7.8E-07 1.7E-11 64.0 6.1 34 51-84 1-34 (165)
323 PRK10762 D-ribose transporter 98.4 1E-06 2.2E-11 75.3 7.6 56 118-175 146-207 (501)
324 PRK14273 phosphate ABC transpo 98.4 2.2E-06 4.7E-11 66.8 8.8 52 121-175 158-215 (254)
325 PRK14272 phosphate ABC transpo 98.4 3.8E-06 8.3E-11 65.3 10.2 59 121-183 156-220 (252)
326 cd03254 ABCC_Glucan_exporter_l 98.4 4.9E-06 1.1E-10 63.8 10.7 61 118-183 144-210 (229)
327 cd03249 ABC_MTABC3_MDL1_MDL2 M 98.4 3.7E-06 8E-11 64.8 9.9 60 120-184 146-211 (238)
328 PRK10070 glycine betaine trans 98.4 2E-06 4.3E-11 71.1 8.8 57 118-175 169-231 (400)
329 TIGR01189 ccmA heme ABC export 98.4 2.9E-06 6.4E-11 63.5 9.1 28 47-74 24-51 (198)
330 cd03236 ABC_RNaseL_inhibitor_d 98.4 9E-07 2E-11 68.9 6.5 29 47-75 24-52 (255)
331 TIGR02858 spore_III_AA stage I 98.4 2.3E-06 5.1E-11 66.9 8.7 115 49-172 111-232 (270)
332 PRK14265 phosphate ABC transpo 98.4 2.4E-06 5.3E-11 67.3 8.9 62 119-184 167-234 (274)
333 PRK11629 lolD lipoprotein tran 98.4 3E-06 6.5E-11 65.1 9.2 54 121-175 153-212 (233)
334 PRK11432 fbpC ferric transport 98.4 1.8E-06 3.9E-11 70.3 8.3 58 117-175 140-203 (351)
335 PRK10982 galactose/methyl gala 98.4 1.2E-06 2.6E-11 74.7 7.5 56 118-175 139-200 (491)
336 CHL00131 ycf16 sulfate ABC tra 98.4 2.7E-06 5.8E-11 66.2 8.9 55 119-175 157-217 (252)
337 PRK10419 nikE nickel transport 98.4 2.6E-06 5.7E-11 66.9 8.9 57 118-175 156-218 (268)
338 PRK11147 ABC transporter ATPas 98.4 2.8E-06 6E-11 74.6 9.9 58 120-183 447-510 (635)
339 cd03283 ABC_MutS-like MutS-lik 98.4 6.6E-07 1.4E-11 67.1 5.2 25 49-73 25-49 (199)
340 PRK06067 flagellar accessory p 98.4 2.5E-06 5.4E-11 65.6 8.5 48 37-84 13-60 (234)
341 KOG0066 eIF2-interacting prote 98.4 2.1E-06 4.6E-11 70.2 8.2 131 38-175 602-767 (807)
342 COG1123 ATPase components of v 98.4 6.3E-06 1.4E-10 69.6 11.3 61 114-175 430-496 (539)
343 PRK13531 regulatory ATPase Rav 98.4 4.5E-06 9.7E-11 69.8 10.4 48 24-75 18-65 (498)
344 PRK13649 cbiO cobalt transport 98.4 2.1E-06 4.4E-11 67.9 8.1 53 121-175 153-211 (280)
345 cd03257 ABC_NikE_OppD_transpor 98.4 2.8E-06 6E-11 65.1 8.6 62 121-184 153-220 (228)
346 PRK14269 phosphate ABC transpo 98.4 2.6E-06 5.6E-11 66.1 8.5 62 118-183 147-214 (246)
347 PRK09984 phosphonate/organopho 98.4 2.9E-06 6.3E-11 66.4 8.9 55 120-175 159-219 (262)
348 PF04665 Pox_A32: Poxvirus A32 98.4 3.8E-06 8.2E-11 64.3 9.1 35 50-84 14-48 (241)
349 TIGR03345 VI_ClpV1 type VI sec 98.4 1.4E-05 2.9E-10 72.2 14.1 49 26-74 566-621 (852)
350 PRK10851 sulfate/thiosulfate t 98.4 2.5E-06 5.3E-11 69.6 8.6 57 118-175 141-203 (353)
351 PRK10253 iron-enterobactin tra 98.4 3.3E-06 7.1E-11 66.3 9.0 55 120-175 150-210 (265)
352 PRK13645 cbiO cobalt transport 98.4 2.4E-06 5.1E-11 67.9 8.3 28 47-74 35-62 (289)
353 PRK10247 putative ABC transpor 98.4 3.1E-06 6.7E-11 64.7 8.7 61 121-184 145-211 (225)
354 PRK14235 phosphate transporter 98.3 7.4E-06 1.6E-10 64.3 11.0 52 121-175 171-228 (267)
355 PRK11288 araG L-arabinose tran 98.3 1.6E-06 3.4E-11 74.1 7.8 55 119-175 146-206 (501)
356 PRK13646 cbiO cobalt transport 98.3 2.1E-06 4.6E-11 68.0 8.0 55 120-175 152-212 (286)
357 cd03260 ABC_PstB_phosphate_tra 98.3 5.4E-06 1.2E-10 63.5 10.0 60 120-183 148-213 (227)
358 PRK09700 D-allose transporter 98.3 1.6E-06 3.4E-11 74.3 7.7 56 118-175 150-211 (510)
359 PRK13650 cbiO cobalt transport 98.3 1.2E-06 2.6E-11 69.2 6.5 54 119-173 146-205 (279)
360 TIGR02902 spore_lonB ATP-depen 98.3 3.6E-06 7.9E-11 72.2 9.8 48 24-73 63-110 (531)
361 PRK15064 ABC transporter ATP-b 98.3 2.9E-06 6.3E-11 73.0 9.2 132 47-184 343-509 (530)
362 TIGR00767 rho transcription te 98.3 1E-06 2.3E-11 71.8 6.1 95 47-143 166-267 (415)
363 PRK14267 phosphate ABC transpo 98.3 5.4E-06 1.2E-10 64.5 9.9 28 47-74 28-55 (253)
364 PRK14275 phosphate ABC transpo 98.3 3.3E-06 7.2E-11 67.0 8.7 60 120-183 189-254 (286)
365 KOG0731 AAA+-type ATPase conta 98.3 1.1E-05 2.4E-10 70.5 12.4 156 25-203 310-499 (774)
366 cd03278 ABC_SMC_barmotin Barmo 98.3 3.4E-06 7.3E-11 63.2 8.3 22 51-72 24-45 (197)
367 cd03299 ABC_ModC_like Archeal 98.3 4E-06 8.6E-11 64.6 8.9 63 119-183 135-203 (235)
368 PRK11701 phnK phosphonate C-P 98.3 2.9E-06 6.3E-11 66.3 8.2 55 120-175 158-218 (258)
369 PRK14242 phosphate transporter 98.3 4.5E-06 9.7E-11 65.0 9.3 59 121-183 157-221 (253)
370 PRK14262 phosphate ABC transpo 98.3 4.9E-06 1.1E-10 64.7 9.5 52 121-175 154-211 (250)
371 COG1117 PstB ABC-type phosphat 98.3 1.8E-06 4E-11 64.1 6.5 49 124-175 160-214 (253)
372 PRK15439 autoinducer 2 ABC tra 98.3 2.7E-06 5.9E-11 72.8 8.7 55 119-175 409-469 (510)
373 PRK10744 pstB phosphate transp 98.3 4.6E-06 1E-10 65.2 9.3 53 120-175 163-221 (260)
374 CHL00095 clpC Clp protease ATP 98.3 2.8E-05 6E-10 70.3 15.4 50 25-74 508-564 (821)
375 PRK13631 cbiO cobalt transport 98.3 3.9E-06 8.4E-11 67.6 9.0 54 119-174 182-241 (320)
376 TIGR02974 phageshock_pspF psp 98.3 4E-06 8.7E-11 67.7 9.1 46 28-73 1-46 (329)
377 PRK13644 cbiO cobalt transport 98.3 2E-06 4.3E-11 67.8 7.2 60 120-183 143-208 (274)
378 PRK14261 phosphate ABC transpo 98.3 4.8E-06 1E-10 64.8 9.2 60 120-183 156-221 (253)
379 TIGR01186 proV glycine betaine 98.3 3.4E-06 7.3E-11 68.9 8.6 56 119-175 135-196 (363)
380 cd03243 ABC_MutS_homologs The 98.3 4.8E-07 1E-11 68.0 3.5 23 49-71 29-51 (202)
381 cd03289 ABCC_CFTR2 The CFTR su 98.3 5.9E-06 1.3E-10 65.1 9.7 28 47-74 28-55 (275)
382 PRK13409 putative ATPase RIL; 98.3 3.4E-06 7.4E-11 73.2 9.1 54 119-175 218-277 (590)
383 PRK14238 phosphate transporter 98.3 7.5E-06 1.6E-10 64.4 10.3 28 47-74 48-75 (271)
384 TIGR02633 xylG D-xylose ABC tr 98.3 2.5E-06 5.4E-11 72.9 8.2 62 119-183 409-476 (500)
385 PRK09452 potA putrescine/sperm 98.3 3.2E-06 7E-11 69.4 8.5 58 117-175 148-211 (375)
386 KOG0741 AAA+-type ATPase [Post 98.3 1.2E-05 2.5E-10 67.3 11.6 134 48-203 537-691 (744)
387 PRK06871 DNA polymerase III su 98.3 8.2E-05 1.8E-09 59.8 16.2 155 34-199 10-179 (325)
388 PRK11288 araG L-arabinose tran 98.3 2.6E-06 5.6E-11 72.8 8.2 55 119-175 402-462 (501)
389 smart00534 MUTSac ATPase domai 98.3 2.3E-07 5.1E-12 68.8 1.6 21 51-71 1-21 (185)
390 COG1119 ModF ABC-type molybden 98.3 1.3E-05 2.8E-10 60.8 10.9 25 48-72 56-80 (257)
391 KOG0739 AAA+-type ATPase [Post 98.3 6.9E-06 1.5E-10 64.0 9.6 166 25-214 132-329 (439)
392 PRK13549 xylose transporter AT 98.3 3.5E-06 7.5E-11 72.1 8.9 55 119-175 411-471 (506)
393 PRK14237 phosphate transporter 98.3 5.1E-06 1.1E-10 65.2 9.2 28 47-74 44-71 (267)
394 PRK15112 antimicrobial peptide 98.3 2.6E-06 5.7E-11 66.9 7.5 62 120-183 156-223 (267)
395 PRK13636 cbiO cobalt transport 98.3 1.5E-06 3.4E-11 68.7 6.3 54 121-175 149-208 (283)
396 PRK15079 oligopeptide ABC tran 98.3 3.5E-06 7.6E-11 68.1 8.4 55 120-175 168-228 (331)
397 PRK14248 phosphate ABC transpo 98.3 5.8E-06 1.3E-10 64.9 9.4 59 121-183 172-236 (268)
398 PRK14245 phosphate ABC transpo 98.3 5E-06 1.1E-10 64.6 8.9 60 120-183 153-218 (250)
399 PRK10418 nikD nickel transport 98.3 3.7E-06 8E-11 65.5 8.2 28 47-74 27-54 (254)
400 PRK10982 galactose/methyl gala 98.3 3E-06 6.4E-11 72.3 8.3 63 118-183 396-464 (491)
401 PRK14240 phosphate transporter 98.3 5.9E-06 1.3E-10 64.2 9.3 59 121-183 154-218 (250)
402 PRK13548 hmuV hemin importer A 98.3 5E-06 1.1E-10 64.9 8.9 28 47-74 26-53 (258)
403 COG3842 PotA ABC-type spermidi 98.3 8.3E-07 1.8E-11 71.4 4.6 57 114-175 137-203 (352)
404 cd03287 ABC_MSH3_euk MutS3 hom 98.3 7.4E-07 1.6E-11 67.8 4.1 118 48-174 30-159 (222)
405 TIGR01817 nifA Nif-specific re 98.3 8.3E-06 1.8E-10 70.3 11.0 51 24-74 194-244 (534)
406 PRK11607 potG putrescine trans 98.3 3.9E-06 8.5E-11 69.0 8.6 58 117-175 153-216 (377)
407 cd03240 ABC_Rad50 The catalyti 98.3 7.7E-06 1.7E-10 61.6 9.5 59 123-185 131-197 (204)
408 PRK14253 phosphate ABC transpo 98.3 5.5E-06 1.2E-10 64.3 9.0 53 120-175 152-210 (249)
409 TIGR03415 ABC_choXWV_ATP choli 98.3 4.4E-06 9.5E-11 68.6 8.8 54 121-175 172-231 (382)
410 PRK13549 xylose transporter AT 98.3 2.7E-06 5.8E-11 72.8 7.9 55 119-175 149-209 (506)
411 PRK13639 cbiO cobalt transport 98.3 2E-06 4.3E-11 67.8 6.6 53 121-175 145-203 (275)
412 TIGR03269 met_CoM_red_A2 methy 98.3 5.1E-06 1.1E-10 71.4 9.6 62 120-183 175-242 (520)
413 PRK13635 cbiO cobalt transport 98.3 2.3E-06 5E-11 67.6 6.9 53 120-173 147-205 (279)
414 COG2607 Predicted ATPase (AAA+ 98.3 1.8E-05 3.8E-10 59.9 11.1 61 21-81 55-117 (287)
415 KOG0728 26S proteasome regulat 98.3 3.9E-05 8.5E-10 58.6 13.0 154 24-200 144-332 (404)
416 PRK11308 dppF dipeptide transp 98.3 3.9E-06 8.4E-11 67.8 8.3 56 119-175 160-221 (327)
417 PRK14268 phosphate ABC transpo 98.3 5.5E-06 1.2E-10 64.7 9.0 59 121-183 162-226 (258)
418 PRK13634 cbiO cobalt transport 98.3 4E-06 8.6E-11 66.6 8.3 55 120-175 152-212 (290)
419 PRK11608 pspF phage shock prot 98.3 7.6E-06 1.7E-10 66.1 10.0 47 26-72 6-52 (326)
420 COG3840 ThiQ ABC-type thiamine 98.3 1.8E-05 3.9E-10 57.5 10.7 127 47-175 23-196 (231)
421 PRK09361 radB DNA repair and r 98.3 5.2E-06 1.1E-10 63.4 8.6 48 37-84 11-58 (225)
422 cd03234 ABCG_White The White s 98.3 7.4E-06 1.6E-10 62.7 9.4 28 47-74 31-58 (226)
423 PRK11034 clpA ATP-dependent Cl 98.3 2E-05 4.3E-10 70.1 13.3 49 26-74 458-513 (758)
424 PRK11819 putative ABC transpor 98.3 6.2E-06 1.3E-10 71.4 10.0 59 120-184 452-516 (556)
425 COG2274 SunT ABC-type bacterio 98.3 4.5E-06 9.7E-11 73.5 9.2 29 47-75 497-525 (709)
426 PRK14274 phosphate ABC transpo 98.3 6.1E-06 1.3E-10 64.5 9.1 59 121-183 163-227 (259)
427 cd03291 ABCC_CFTR1 The CFTR su 98.3 1.1E-05 2.3E-10 63.9 10.5 28 47-74 61-88 (282)
428 TIGR02633 xylG D-xylose ABC tr 98.3 3.1E-06 6.7E-11 72.4 8.0 55 119-175 147-207 (500)
429 PRK14243 phosphate transporter 98.3 1.4E-05 2.9E-10 62.7 11.0 60 121-184 159-224 (264)
430 PRK14255 phosphate ABC transpo 98.3 7.6E-06 1.6E-10 63.7 9.5 59 121-183 156-220 (252)
431 COG0542 clpA ATP-binding subun 98.3 2.5E-05 5.4E-10 68.7 13.4 162 26-198 491-704 (786)
432 PRK14241 phosphate transporter 98.3 8.5E-06 1.8E-10 63.6 9.8 28 47-74 28-55 (258)
433 PRK14270 phosphate ABC transpo 98.3 5.8E-06 1.3E-10 64.3 8.8 28 47-74 28-55 (251)
434 PF03215 Rad17: Rad17 cell cyc 98.3 9.1E-06 2E-10 69.2 10.5 60 22-83 15-77 (519)
435 PRK13640 cbiO cobalt transport 98.3 2.5E-06 5.4E-11 67.5 6.8 28 47-74 31-58 (282)
436 COG4615 PvdE ABC-type sideroph 98.3 2.8E-06 6E-11 68.6 6.9 36 48-83 348-383 (546)
437 PF05621 TniB: Bacterial TniB 98.3 1.2E-05 2.5E-10 63.3 10.2 106 34-143 45-157 (302)
438 PRK14256 phosphate ABC transpo 98.3 9.1E-06 2E-10 63.2 9.8 27 47-73 28-54 (252)
439 TIGR02868 CydC thiol reductant 98.3 3.5E-06 7.6E-11 72.5 8.2 28 47-74 359-386 (529)
440 TIGR03269 met_CoM_red_A2 methy 98.3 4.3E-06 9.3E-11 71.8 8.6 62 121-184 435-502 (520)
441 PRK14239 phosphate transporter 98.3 6.4E-06 1.4E-10 64.1 8.9 59 121-183 156-220 (252)
442 KOG0736 Peroxisome assembly fa 98.3 3E-05 6.4E-10 67.5 13.4 151 22-195 667-852 (953)
443 PRK11176 lipid transporter ATP 98.3 1.8E-06 3.8E-11 75.2 6.3 29 47-75 367-395 (582)
444 PRK04296 thymidine kinase; Pro 98.3 2.4E-06 5.2E-11 63.6 6.1 113 49-170 2-117 (190)
445 PRK13657 cyclic beta-1,2-gluca 98.3 3E-06 6.6E-11 73.8 7.6 28 47-74 359-386 (588)
446 PRK10762 D-ribose transporter 98.3 3.8E-06 8.3E-11 71.8 8.1 54 120-175 402-461 (501)
447 cd03290 ABCC_SUR1_N The SUR do 98.3 1.6E-05 3.5E-10 60.5 10.7 62 119-184 146-215 (218)
448 PHA00729 NTP-binding motif con 98.3 7.5E-06 1.6E-10 62.0 8.7 26 49-74 17-42 (226)
449 PRK14260 phosphate ABC transpo 98.3 1.3E-05 2.9E-10 62.6 10.5 59 121-183 158-222 (259)
450 TIGR02857 CydD thiol reductant 98.3 4.1E-06 8.9E-11 72.1 8.2 28 47-74 346-373 (529)
451 PRK03695 vitamin B12-transport 98.3 3.4E-06 7.3E-11 65.5 7.0 27 47-73 20-46 (248)
452 TIGR02769 nickel_nikE nickel i 98.3 6.5E-06 1.4E-10 64.6 8.7 28 47-74 35-62 (265)
453 cd03279 ABC_sbcCD SbcCD and ot 98.3 1.6E-05 3.5E-10 60.3 10.5 22 49-70 28-49 (213)
454 TIGR02323 CP_lyasePhnK phospho 98.2 6E-06 1.3E-10 64.3 8.3 55 120-175 155-215 (253)
455 PHA02244 ATPase-like protein 98.2 9.3E-06 2E-10 65.7 9.5 51 24-74 94-144 (383)
456 PRK13547 hmuV hemin importer A 98.2 6E-06 1.3E-10 65.0 8.4 28 47-74 25-52 (272)
457 PRK13633 cobalt transporter AT 98.2 3E-06 6.4E-11 67.0 6.6 53 121-174 152-210 (280)
458 PRK14246 phosphate ABC transpo 98.2 9.1E-06 2E-10 63.4 9.3 59 121-183 161-225 (257)
459 PRK14271 phosphate ABC transpo 98.2 6.4E-06 1.4E-10 65.0 8.4 28 47-74 45-72 (276)
460 TIGR03719 ABC_ABC_ChvD ATP-bin 98.2 6.7E-06 1.5E-10 71.1 9.3 131 47-184 346-514 (552)
461 PRK14244 phosphate ABC transpo 98.2 1.4E-05 2.9E-10 62.2 10.2 52 121-175 157-214 (251)
462 cd01121 Sms Sms (bacterial rad 98.2 8.1E-06 1.8E-10 66.8 9.2 49 36-84 69-117 (372)
463 KOG0991 Replication factor C, 98.2 6.6E-06 1.4E-10 62.0 7.8 52 22-75 23-74 (333)
464 cd03288 ABCC_SUR2 The SUR doma 98.2 1.8E-05 4E-10 61.7 10.9 61 118-183 161-227 (257)
465 PRK09376 rho transcription ter 98.2 2.5E-06 5.5E-11 69.4 6.1 42 47-88 167-209 (416)
466 COG4181 Predicted ABC-type tra 98.2 1E-05 2.2E-10 58.2 8.4 61 114-175 147-213 (228)
467 cd01129 PulE-GspE PulE/GspE Th 98.2 2.2E-05 4.7E-10 61.5 11.2 119 34-171 68-186 (264)
468 PRK13632 cbiO cobalt transport 98.2 3.8E-06 8.3E-11 66.1 7.0 28 47-74 33-60 (271)
469 TIGR01420 pilT_fam pilus retra 98.2 7.8E-06 1.7E-10 66.5 9.0 110 49-170 122-231 (343)
470 KOG0735 AAA+-type ATPase [Post 98.2 1.8E-05 3.9E-10 68.3 11.3 166 25-213 666-863 (952)
471 PRK09700 D-allose transporter 98.2 3.7E-06 8E-11 72.0 7.4 62 119-183 415-482 (510)
472 PLN03073 ABC transporter F fam 98.2 8.1E-06 1.8E-10 72.4 9.7 131 47-183 533-697 (718)
473 PRK08769 DNA polymerase III su 98.2 0.00011 2.3E-09 59.0 15.1 144 32-198 10-184 (319)
474 PRK13648 cbiO cobalt transport 98.2 3.7E-06 7.9E-11 66.1 6.7 28 47-74 33-60 (269)
475 PRK15093 antimicrobial peptide 98.2 6.9E-06 1.5E-10 66.5 8.4 54 121-175 166-225 (330)
476 PLN03073 ABC transporter F fam 98.2 1E-05 2.2E-10 71.8 10.1 50 121-175 352-407 (718)
477 PF00158 Sigma54_activat: Sigm 98.2 6E-06 1.3E-10 60.2 7.3 46 28-73 1-46 (168)
478 PRK14251 phosphate ABC transpo 98.2 9E-06 1.9E-10 63.2 8.8 28 47-74 28-55 (251)
479 PRK13637 cbiO cobalt transport 98.2 7.6E-06 1.6E-10 64.9 8.5 56 119-175 150-211 (287)
480 PRK14236 phosphate transporter 98.2 1.2E-05 2.7E-10 63.2 9.6 28 47-74 49-76 (272)
481 KOG0727 26S proteasome regulat 98.2 2.1E-05 4.7E-10 60.0 10.3 152 27-201 156-341 (408)
482 PRK11174 cysteine/glutathione 98.2 5.1E-06 1.1E-10 72.4 8.1 27 47-73 374-400 (588)
483 TIGR02203 MsbA_lipidA lipid A 98.2 2.8E-06 6.1E-11 73.8 6.4 63 117-184 473-541 (571)
484 PRK13642 cbiO cobalt transport 98.2 8.5E-06 1.8E-10 64.3 8.6 52 121-173 148-205 (277)
485 KOG0743 AAA+-type ATPase [Post 98.2 1.7E-05 3.6E-10 65.1 10.2 132 49-214 235-397 (457)
486 PRK14254 phosphate ABC transpo 98.2 1.1E-05 2.3E-10 64.0 9.1 54 119-175 186-245 (285)
487 COG0410 LivF ABC-type branched 98.2 1.9E-05 4.1E-10 59.4 9.7 29 47-75 27-55 (237)
488 cd01124 KaiC KaiC is a circadi 98.2 7.5E-06 1.6E-10 60.6 7.7 33 52-84 2-34 (187)
489 PRK07993 DNA polymerase III su 98.2 9.4E-05 2E-09 59.9 14.5 141 33-198 9-179 (334)
490 PRK14263 phosphate ABC transpo 98.2 2.3E-05 5.1E-10 61.3 10.7 59 121-183 157-221 (261)
491 TIGR02982 heterocyst_DevA ABC 98.2 1.2E-05 2.5E-10 61.3 8.8 61 121-184 149-215 (220)
492 PRK13695 putative NTPase; Prov 98.2 3.1E-06 6.8E-11 62.1 5.5 25 51-75 2-26 (174)
493 cd03282 ABC_MSH4_euk MutS4 hom 98.2 1.5E-06 3.3E-11 65.3 3.8 24 48-71 28-51 (204)
494 COG1125 OpuBA ABC-type proline 98.2 1.9E-05 4.1E-10 60.4 9.6 60 115-175 137-202 (309)
495 PF13604 AAA_30: AAA domain; P 98.2 2.7E-06 5.8E-11 63.7 5.1 113 35-169 7-131 (196)
496 KOG0735 AAA+-type ATPase [Post 98.2 1.8E-05 3.8E-10 68.3 10.4 132 48-199 430-586 (952)
497 PRK09473 oppD oligopeptide tra 98.2 4.4E-06 9.6E-11 67.5 6.7 28 47-74 40-67 (330)
498 smart00763 AAA_PrkA PrkA AAA d 98.2 3.9E-06 8.5E-11 67.7 6.2 49 27-75 52-104 (361)
499 cd01393 recA_like RecA is a b 98.2 2.4E-05 5.2E-10 59.8 10.4 48 37-84 7-60 (226)
500 cd03227 ABC_Class2 ABC-type Cl 98.2 6.2E-06 1.3E-10 59.8 6.7 22 50-71 22-43 (162)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.95 E-value=5.9e-27 Score=214.40 Aligned_cols=211 Identities=35% Similarity=0.617 Sum_probs=165.9
Q ss_pred ChhhHHHHHHHHHHhhcCCCCCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCce
Q 039455 1 RESELIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS 80 (216)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~ 80 (216)
+|++++++|++++......+++...+.++||++.++++..++....++.++++|+||+|+||||||+.+++++..+|...
T Consensus 159 ~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~ 238 (1153)
T PLN03210 159 NEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSS 238 (1153)
T ss_pred CHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeE
Confidence 58999999999999999888888889999999999999999886667789999999999999999999999998888887
Q ss_pred Eeeccc--cccc---cc-----cC-chHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHHHHHh
Q 039455 81 SFLANV--REVS---VT-----RG-LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQAL 149 (216)
Q Consensus 81 ~~~~~~--~~~~---~~-----~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~l 149 (216)
.|+... .... .. .. ......+++..+.......... ...+++.+.++++||||||+|..++++.+
T Consensus 239 vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~~~l~~L 314 (1153)
T PLN03210 239 VFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQDVLDAL 314 (1153)
T ss_pred EEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCHHHHHHH
Confidence 776421 1100 00 00 1123334444443332221111 24567778899999999999999999888
Q ss_pred hcCCCCCCCCcEEEEEeCCchhhhccCCcceEEecCCChHHHHHHHhhhhcCCCCCchhHhhhccc
Q 039455 150 AGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSKC 215 (216)
Q Consensus 150 ~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~~~~~~~~~l~~~ 215 (216)
.......++|++||+|||+..++......+.++++.++.++|++||.+++|....+.+.+.+++++
T Consensus 315 ~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~ 380 (1153)
T PLN03210 315 AGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASE 380 (1153)
T ss_pred HhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence 776665678999999999999887776778999999999999999999999877666677777654
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.95 E-value=5.7e-27 Score=185.53 Aligned_cols=169 Identities=32% Similarity=0.443 Sum_probs=129.4
Q ss_pred chhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH--hcCCCCceEeeccccccccccCchHHHHHHHHHHHh
Q 039455 31 IASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT--LKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLM 108 (216)
Q Consensus 31 R~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 108 (216)
|+.++++|.+.|....+...+|+|+|++|+||||||..+++. .+.+|..++|+.... ......+...++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~----~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSK----NPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-----SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccccccccccccc----ccccccccccccccccc
Confidence 789999999999876577899999999999999999999987 888899999997332 34556777778877766
Q ss_pred hccc--cccchhhhHHHHHHHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCC-cceEEecC
Q 039455 109 ERNL--IIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGV-TNIYKVRG 185 (216)
Q Consensus 109 ~~~~--~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~-~~~~~l~~ 185 (216)
.... ...+.......+.+.+.++++||||||+++...+..+...+.....+++||+|||+..+...... ...+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5321 34456668888999999999999999999999888877666655678999999999887776543 68899999
Q ss_pred CChHHHHHHHhhhhcCCC
Q 039455 186 LDYVEALQLFHLKVSKGK 203 (216)
Q Consensus 186 l~~~~~~~ll~~~~~~~~ 203 (216)
|+.+++++||.+.++...
T Consensus 157 L~~~ea~~L~~~~~~~~~ 174 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKE 174 (287)
T ss_dssp --HHHHHHHHHHHHTSHS
T ss_pred cccccccccccccccccc
Confidence 999999999999987654
No 3
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.92 E-value=1.6e-24 Score=191.22 Aligned_cols=182 Identities=29% Similarity=0.338 Sum_probs=153.3
Q ss_pred ccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH---hcCCCCceEeeccccccccccCchHHHHHHHHH
Q 039455 29 VGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT---LKDQFEASSFLANVREVSVTRGLVPLQEQLLSE 105 (216)
Q Consensus 29 vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 105 (216)
||.+..++.+...|-.... .+++|+||||+|||||++.+.+. +..+|+.++|+. .+.......+..+++..
T Consensus 161 VG~e~~~~kl~~~L~~d~~--~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDV--GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCCC--CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 9999999999998876433 89999999999999999999984 567899999998 44467788888888887
Q ss_pred HHhhcc-ccccchhhhHHHHHHHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc-cCCcceEEe
Q 039455 106 VLMERN-LIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG-HGVTNIYKV 183 (216)
Q Consensus 106 ~~~~~~-~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~-~~~~~~~~l 183 (216)
+..... ............+.+.+..++++||+||+|...+|+.+...++...+|++|++|||+.+++.. .+....+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 766332 222233677888999999999999999999999999999999877788999999999999998 667889999
Q ss_pred cCCChHHHHHHHhhhhcCCC-CCchhHhhhcccC
Q 039455 184 RGLDYVEALQLFHLKVSKGK-QPTDDRVELSKCV 216 (216)
Q Consensus 184 ~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~~i 216 (216)
+.|+.++||+||.+.++... ..++.+.+++++|
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v 348 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEV 348 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHH
Confidence 99999999999999997764 4545577777653
No 4
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.61 E-value=3.4e-14 Score=117.45 Aligned_cols=173 Identities=17% Similarity=0.121 Sum_probs=110.7
Q ss_pred CcccccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeeccccccccccCchHH
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 98 (216)
..|+.|+||++++++|...+... +.....+.|+|++|+|||++++.++..+.+..+ ..+++.+. . ......+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~-~---~~~~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ-I---DRTRYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC-c---CCCHHHH
Confidence 45778999999999999988543 334567899999999999999999998765442 23444322 1 2234455
Q ss_pred HHHHHHHHHhhcc-ccccchhhhHHHHHHHhC--CceEEEEEeCCCCHH------HHHHhhcCCCCC-CCCcEEEEEeCC
Q 039455 99 QEQLLSEVLMERN-LIIWDVHKGINLIRWRLC--RKRVLVVLDDVDQLE------QLQALAGNHDWF-GFGSRIIITTRD 168 (216)
Q Consensus 99 ~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~------~~~~l~~~~~~~-~~~~~il~tsr~ 168 (216)
...++.++..... ....+.......+.+.+. +++.+|||||++... .+..+...+... +.+..+|++++.
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~ 182 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC
Confidence 6666666654211 112234445555666654 356899999998653 344444322211 123446777776
Q ss_pred chhhhccC-------CcceEEecCCChHHHHHHHhhhh
Q 039455 169 EHVLKGHG-------VTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 169 ~~~~~~~~-------~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
..+...+. ....+.++|++.++..+++...+
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence 54433221 23578999999999999998765
No 5
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.57 E-value=2e-13 Score=111.68 Aligned_cols=174 Identities=16% Similarity=0.134 Sum_probs=107.8
Q ss_pred CcccccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC------ceEeeccccccccccC
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVREVSVTRG 94 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 94 (216)
..|+.++||+++++.|..++... +.....+.|+||+|+|||++++.+++.+.+... ..+|+.+.. ...
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~----~~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI----LDT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC----CCC
Confidence 45668999999999999988742 334568999999999999999999987653222 234444221 233
Q ss_pred chHHHHHHHHHHHh-hccc--cccchhhhHHHHHHHhC--CceEEEEEeCCCCHH-----HHHHhhcCC--CCC-CCCcE
Q 039455 95 LVPLQEQLLSEVLM-ERNL--IIWDVHKGINLIRWRLC--RKRVLVVLDDVDQLE-----QLQALAGNH--DWF-GFGSR 161 (216)
Q Consensus 95 ~~~~~~~l~~~~~~-~~~~--~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~-----~~~~l~~~~--~~~-~~~~~ 161 (216)
...+...++.++.. .... ...+.......+.+.+. +++.+||||+++.+. .+..+.... ... +....
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 44566667766642 1111 11123333444444443 467899999998761 133333221 111 13345
Q ss_pred EEEEeCCchhhhccC-------CcceEEecCCChHHHHHHHhhhhc
Q 039455 162 IIITTRDEHVLKGHG-------VTNIYKVRGLDYVEALQLFHLKVS 200 (216)
Q Consensus 162 il~tsr~~~~~~~~~-------~~~~~~l~~l~~~~~~~ll~~~~~ 200 (216)
+|++++...+...+. ....+.++|++.++..+++..++.
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 666776554432221 135789999999999999998763
No 6
>PF05729 NACHT: NACHT domain
Probab=99.55 E-value=9.8e-14 Score=100.79 Aligned_cols=142 Identities=25% Similarity=0.324 Sum_probs=84.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcCCC------CceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINL 123 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 123 (216)
++++|+|++|+||||+++.++..+.... ..++|+. .+..........+...+....... ...... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPES----IAPIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccc----hhhhHH---H
Confidence 4789999999999999999998765443 2344443 333222222222323332222111 111111 2
Q ss_pred HHHH-hCCceEEEEEeCCCCHHH---------HHHhhcCC-C-CCCCCcEEEEEeCCchh---hhccCCcceEEecCCCh
Q 039455 124 IRWR-LCRKRVLVVLDDVDQLEQ---------LQALAGNH-D-WFGFGSRIIITTRDEHV---LKGHGVTNIYKVRGLDY 188 (216)
Q Consensus 124 l~~~-l~~~~~llvlDd~~~~~~---------~~~l~~~~-~-~~~~~~~il~tsr~~~~---~~~~~~~~~~~l~~l~~ 188 (216)
+... ...++++||||++|+... +..++..+ . ...+++++++|||.... ...+.....+++.+|++
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 2222 246789999999975532 12222211 1 12468999999998765 33344557899999999
Q ss_pred HHHHHHHhhhh
Q 039455 189 VEALQLFHLKV 199 (216)
Q Consensus 189 ~~~~~ll~~~~ 199 (216)
++..++++++.
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 7
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.53 E-value=6.8e-14 Score=107.13 Aligned_cols=168 Identities=21% Similarity=0.289 Sum_probs=85.3
Q ss_pred cccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH------HHH
Q 039455 28 LVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL------QEQ 101 (216)
Q Consensus 28 ~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 101 (216)
|+||+.+++.|.+++..+ ....++|+||.|+|||+|++.+....++....++|+....... ....... ...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~-~~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESN-ESSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSH-HHHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchh-hhHHHHHHHHHHHHHH
Confidence 799999999999998863 3479999999999999999999998755433455554222211 0011111 011
Q ss_pred HHHHHHhhccc---------cccchhhhHHHHHHHhC--CceEEEEEeCCCCHH-----------HHHHhhcCCCCCCCC
Q 039455 102 LLSEVLMERNL---------IIWDVHKGINLIRWRLC--RKRVLVVLDDVDQLE-----------QLQALAGNHDWFGFG 159 (216)
Q Consensus 102 l~~~~~~~~~~---------~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~-----------~~~~l~~~~~~~~~~ 159 (216)
+...+...... ...........+.+.+. +++.+|||||++... .+..+...... ...
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~ 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLS-QQN 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TT
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccc-cCC
Confidence 11112111100 00111222333333333 235999999996544 22333333221 234
Q ss_pred cEEEEEeCCchhhhc--------cCCcceEEecCCChHHHHHHHhhhh
Q 039455 160 SRIIITTRDEHVLKG--------HGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 160 ~~il~tsr~~~~~~~--------~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
..+++++....+... .+....+.++||+.+++++++...+
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~ 204 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELF 204 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHH
Confidence 445555555433332 2344569999999999999999864
No 8
>PRK06893 DNA replication initiation factor; Validated
Probab=99.51 E-value=1.3e-13 Score=105.65 Aligned_cols=136 Identities=18% Similarity=0.202 Sum_probs=82.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL 128 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 128 (216)
.+.+.|+|++|+|||+|+..+++.+..+...+.|+..... ......++ ..+
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~-------~~~~~~~~----------------------~~~ 89 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS-------QYFSPAVL----------------------ENL 89 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh-------hhhhHHHH----------------------hhc
Confidence 4678999999999999999999987655556666652100 00000110 011
Q ss_pred CCceEEEEEeCCCCH---HHHH-HhhcCCCCC-CCCcEEE-EEeCC---------chhhhccCCcceEEecCCChHHHHH
Q 039455 129 CRKRVLVVLDDVDQL---EQLQ-ALAGNHDWF-GFGSRII-ITTRD---------EHVLKGHGVTNIYKVRGLDYVEALQ 193 (216)
Q Consensus 129 ~~~~~llvlDd~~~~---~~~~-~l~~~~~~~-~~~~~il-~tsr~---------~~~~~~~~~~~~~~l~~l~~~~~~~ 193 (216)
.+.-+|+|||++.. ..+. .+...+... ..+..++ +|++. +.+.+++.....+++++++.++.++
T Consensus 90 -~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~ 168 (229)
T PRK06893 90 -EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKII 168 (229)
T ss_pred -ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHH
Confidence 12349999999764 2232 222222211 2345554 44543 2445555566789999999999999
Q ss_pred HHhhhhcCCC--CCchhHhhhcc
Q 039455 194 LFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 194 ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
+|++.+...+ .+++..+.|++
T Consensus 169 iL~~~a~~~~l~l~~~v~~~L~~ 191 (229)
T PRK06893 169 VLQRNAYQRGIELSDEVANFLLK 191 (229)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHH
Confidence 9998886544 45555555544
No 9
>PRK08727 hypothetical protein; Validated
Probab=99.40 E-value=9.3e-12 Score=95.61 Aligned_cols=156 Identities=17% Similarity=0.176 Sum_probs=90.7
Q ss_pred ccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHH
Q 039455 27 GLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEV 106 (216)
Q Consensus 27 ~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (216)
+++|-+..+..+...... .....++|+|++|+|||+|+..+++...+....+.|+.. .. ........+
T Consensus 21 f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~-~~------~~~~~~~~~--- 88 (233)
T PRK08727 21 YIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPL-QA------AAGRLRDAL--- 88 (233)
T ss_pred ccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeH-HH------hhhhHHHHH---
Confidence 334444444444444332 233569999999999999999999887666555666641 11 000000111
Q ss_pred HhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH---HHHH-HhhcCCCCC-CCCcEEEEEeCCc---------hhh
Q 039455 107 LMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL---EQLQ-ALAGNHDWF-GFGSRIIITTRDE---------HVL 172 (216)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~---~~~~-~l~~~~~~~-~~~~~il~tsr~~---------~~~ 172 (216)
..+ .+.-+|||||++.. ..+. .+...+... .++..+|+|++.. .+.
T Consensus 89 ---------------~~l-----~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~ 148 (233)
T PRK08727 89 ---------------EAL-----EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLR 148 (233)
T ss_pred ---------------HHH-----hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHH
Confidence 111 12238999999743 1221 222222111 2456799999853 233
Q ss_pred hccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 173 KGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 173 ~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
+++.....+++++++.++..+++++.+...+ .+++.+..|++
T Consensus 149 SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~ 192 (233)
T PRK08727 149 SRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLT 192 (233)
T ss_pred HHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4444567899999999999999998664333 45555555543
No 10
>PRK05642 DNA replication initiation factor; Validated
Probab=99.37 E-value=1.1e-11 Score=95.29 Aligned_cols=135 Identities=20% Similarity=0.296 Sum_probs=81.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhC
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC 129 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 129 (216)
..+.|+|++|+|||+|++.+++.+.+....+.|++. .. +... . ..+.+.+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~~-------------~~~~-----------~----~~~~~~~~ 96 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-AE-------------LLDR-----------G----PELLDNLE 96 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-HH-------------HHhh-----------h----HHHHHhhh
Confidence 678999999999999999999876654455666641 11 1110 0 01111122
Q ss_pred CceEEEEEeCCCCH---HHHH-HhhcCCCCC-CCCcEEEEEeCCc---------hhhhccCCcceEEecCCChHHHHHHH
Q 039455 130 RKRVLVVLDDVDQL---EQLQ-ALAGNHDWF-GFGSRIIITTRDE---------HVLKGHGVTNIYKVRGLDYVEALQLF 195 (216)
Q Consensus 130 ~~~~llvlDd~~~~---~~~~-~l~~~~~~~-~~~~~il~tsr~~---------~~~~~~~~~~~~~l~~l~~~~~~~ll 195 (216)
+- -+|++||++.. ..+. .+...++.. ..+..+|+|++.. .+.+++.....+++++++.++..+++
T Consensus 97 ~~-d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il 175 (234)
T PRK05642 97 QY-ELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRAL 175 (234)
T ss_pred hC-CEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHH
Confidence 21 27889999633 2222 233222211 3467788888743 22334445688999999999999999
Q ss_pred hhhhcCCC--CCchhHhhhcc
Q 039455 196 HLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 196 ~~~~~~~~--~~~~~~~~l~~ 214 (216)
+.++...+ .+++..+.|++
T Consensus 176 ~~ka~~~~~~l~~ev~~~L~~ 196 (234)
T PRK05642 176 QLRASRRGLHLTDEVGHFILT 196 (234)
T ss_pred HHHHHHcCCCCCHHHHHHHHH
Confidence 96553332 44555555544
No 11
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.36 E-value=2.5e-11 Score=105.81 Aligned_cols=188 Identities=12% Similarity=0.092 Sum_probs=107.6
Q ss_pred CcccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-----CC--ceEeeccccccccc
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FE--ASSFLANVREVSVT 92 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~ 92 (216)
..|+.+.||++|+++|..+|... .....++.|+|++|+|||++++.+..++... .+ .++++.+.. .
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~----L 827 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN----V 827 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc----c
Confidence 45678999999999999987642 2223567899999999999999999876432 12 234444222 2
Q ss_pred cCchHHHHHHHHHHHhhccccccchhhhHHHHHHHh-C--CceEEEEEeCCCCHH-----HHHHhhcCCCCCCCCcEEEE
Q 039455 93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL-C--RKRVLVVLDDVDQLE-----QLQALAGNHDWFGFGSRIII 164 (216)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~--~~~~llvlDd~~~~~-----~~~~l~~~~~~~~~~~~il~ 164 (216)
.........+..++....+............+...+ . ....+|||||++.+. .+..++...........+|.
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEE
Confidence 344455566666664433222222223333333333 2 224689999998552 23223322211122233444
Q ss_pred EeCCchhhhcc----C---CcceEEecCCChHHHHHHHhhhhcCC-C-CCchhHhhhcc
Q 039455 165 TTRDEHVLKGH----G---VTNIYKVRGLDYVEALQLFHLKVSKG-K-QPTDDRVELSK 214 (216)
Q Consensus 165 tsr~~~~~~~~----~---~~~~~~l~~l~~~~~~~ll~~~~~~~-~-~~~~~~~~l~~ 214 (216)
++.+.++...+ . ....+.++|++.+|..++|..++... + .+++.++.+|+
T Consensus 908 ISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIAr 966 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCAR 966 (1164)
T ss_pred ecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 55543332221 1 23447789999999999999887532 2 34455555544
No 12
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.34 E-value=1.3e-11 Score=93.81 Aligned_cols=165 Identities=17% Similarity=0.200 Sum_probs=91.0
Q ss_pred ccccchhHHH-HH-HHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeeccccccccccCchHHHHHH
Q 039455 27 GLVGIASRME-KM-NGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQL 102 (216)
Q Consensus 27 ~~vgR~~~~~-~l-~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 102 (216)
+++|...+.. .. ......+......+.|+|++|+|||+|++++++.+.+..+ .+.|+. ...+...+
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~ 79 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREF 79 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHH
Confidence 3457644433 33 3333444444567899999999999999999998765433 344443 12233333
Q ss_pred HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH---H----HHHHhhcCCCCCCCCcEEEEEeCCc------
Q 039455 103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL---E----QLQALAGNHDWFGFGSRIIITTRDE------ 169 (216)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~---~----~~~~l~~~~~~~~~~~~il~tsr~~------ 169 (216)
...+... ....+...+. .--+|+|||++.. . .+..+...+. ..+..+|+|++..
T Consensus 80 ~~~~~~~----------~~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 80 ADALRDG----------EIEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSG 146 (219)
T ss_dssp HHHHHTT----------SHHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTT
T ss_pred HHHHHcc----------cchhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCccccc
Confidence 3332221 1122223333 2338999999754 2 2233333322 3567899999643
Q ss_pred ---hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 170 ---HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 170 ---~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
.+.+++...-.+++++++.++..+++++.+...+ .+++....|++
T Consensus 147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~ 196 (219)
T PF00308_consen 147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLAR 196 (219)
T ss_dssp S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHH
T ss_pred cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 2344445677899999999999999998874444 44455554443
No 13
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.33 E-value=2.1e-11 Score=93.79 Aligned_cols=156 Identities=18% Similarity=0.162 Sum_probs=90.0
Q ss_pred cccccchh-HHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHH
Q 039455 26 DGLVGIAS-RMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLS 104 (216)
Q Consensus 26 ~~~vgR~~-~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (216)
.+++|.+. .+..+.++.... ....+.|+||+|+|||+|+..+++........+.|+.. .. .......
T Consensus 23 ~f~~~~n~~a~~~l~~~~~~~--~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~-~~------~~~~~~~--- 90 (235)
T PRK08084 23 SFYPGDNDSLLAALQNALRQE--HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPL-DK------RAWFVPE--- 90 (235)
T ss_pred ccccCccHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEH-HH------HhhhhHH---
Confidence 34446433 334455554432 34689999999999999999999876654444555541 11 0000000
Q ss_pred HHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH---HHH----HHhhcCCCCCCCCcEEEEEeCCc--------
Q 039455 105 EVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL---EQL----QALAGNHDWFGFGSRIIITTRDE-------- 169 (216)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~---~~~----~~l~~~~~~~~~~~~il~tsr~~-------- 169 (216)
..+.+.+ --+|+|||++.. ..+ .+++..... ..+..+|+||+.+
T Consensus 91 ---------------~~~~~~~-----~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~ 149 (235)
T PRK08084 91 ---------------VLEGMEQ-----LSLVCIDNIECIAGDELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGL 149 (235)
T ss_pred ---------------HHHHhhh-----CCEEEEeChhhhcCCHHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCccc
Confidence 1111111 138999999654 222 222222210 1234788888754
Q ss_pred -hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 170 -HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 170 -~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
.+.+++.....++++++++++..+++++.+...+ .+++.++.|++
T Consensus 150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~ 197 (235)
T PRK08084 150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLK 197 (235)
T ss_pred HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3344555668999999999999999988654333 44555555543
No 14
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=9.9e-11 Score=95.13 Aligned_cols=181 Identities=18% Similarity=0.152 Sum_probs=115.9
Q ss_pred CCcccccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCce--EeeccccccccccCchH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS--SFLANVREVSVTRGLVP 97 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 97 (216)
...|+.+.+|+.+++++...|... +..+..+.|+|++|+|||++++.+..++++..+.. .++. +.. ......
T Consensus 13 ~~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN-c~~---~~t~~~ 88 (366)
T COG1474 13 DYIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN-CLE---LRTPYQ 88 (366)
T ss_pred CCCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe-eee---CCCHHH
Confidence 345667999999999999887632 33344599999999999999999999888765543 5554 332 456667
Q ss_pred HHHHHHHHHHhhccccccchhhhHHHHHHHhC--CceEEEEEeCCCCHHH-----HHHhhcCCCCCCCCcEEEEEeCCch
Q 039455 98 LQEQLLSEVLMERNLIIWDVHKGINLIRWRLC--RKRVLVVLDDVDQLEQ-----LQALAGNHDWFGFGSRIIITTRDEH 170 (216)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~~-----~~~l~~~~~~~~~~~~il~tsr~~~ 170 (216)
+...+++.+... +..........+.+.+.+. ++..++|||+++.+.. +-.+.........+..++..+.+..
T Consensus 89 i~~~i~~~~~~~-p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 89 VLSKILNKLGKV-PLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHHHHHcCCC-CCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHH
Confidence 777777776522 1222344455556666665 4688999999976522 2233322221112234555666554
Q ss_pred hhhccC-------CcceEEecCCChHHHHHHHhhhh---cCCCCCch
Q 039455 171 VLKGHG-------VTNIYKVRGLDYVEALQLFHLKV---SKGKQPTD 207 (216)
Q Consensus 171 ~~~~~~-------~~~~~~l~~l~~~~~~~ll~~~~---~~~~~~~~ 207 (216)
+...+. ....+.++|-+.+|..+++..++ |..+..++
T Consensus 168 ~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~ 214 (366)
T COG1474 168 FLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDD 214 (366)
T ss_pred HHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCc
Confidence 433221 23448999999999999998765 44443333
No 15
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.30 E-value=5.3e-11 Score=96.35 Aligned_cols=190 Identities=13% Similarity=0.107 Sum_probs=98.5
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC--CceEeeccccccccccCchHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQ 99 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 99 (216)
|..-..++|++..++.|..++..+ ..+.+.++||+|+||||+|+.++..+.... ....++.+..............
T Consensus 11 P~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (337)
T PRK12402 11 PALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVED 88 (337)
T ss_pred CCcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcC
Confidence 344567899999999999988753 335789999999999999999998765432 1123332111000000000000
Q ss_pred HHHHHHHHhhccccccchhhhHH---HHHHHh--CCceEEEEEeCCCCHH--HHHHhhcCCCCCCCCcEEEEEeCCch-h
Q 039455 100 EQLLSEVLMERNLIIWDVHKGIN---LIRWRL--CRKRVLVVLDDVDQLE--QLQALAGNHDWFGFGSRIIITTRDEH-V 171 (216)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~---~l~~~l--~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~il~tsr~~~-~ 171 (216)
..+...+................ ...... ...+-+|||||++... ....+...+......+.+|+|+..+. +
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 00000000000000000111111 111111 1334589999997652 22223322222234566777775432 2
Q ss_pred hhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 172 LKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 172 ~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
...+ .....+++.|++.++..+++.+.+...+ .+++.++.|+
T Consensus 169 ~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~ 213 (337)
T PRK12402 169 IPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIA 213 (337)
T ss_pred chhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 2222 2346799999999999999988764433 3445555544
No 16
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.30 E-value=3.2e-11 Score=96.43 Aligned_cols=146 Identities=25% Similarity=0.395 Sum_probs=90.7
Q ss_pred CCcccccccchhHHH---HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455 22 PSAVDGLVGIASRME---KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~---~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (216)
|...++++|.+.-+. -|.+.+.. ......++|||+|+||||||+.+++.....|...--+. .+..++
T Consensus 20 P~~lde~vGQ~HLlg~~~~lrr~v~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--------~gvkdl 89 (436)
T COG2256 20 PKSLDEVVGQEHLLGEGKPLRRAVEA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--------SGVKDL 89 (436)
T ss_pred CCCHHHhcChHhhhCCCchHHHHHhc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--------ccHHHH
Confidence 445667788777663 34555554 34578899999999999999999997665542211110 111111
Q ss_pred HHHHHHHHHhhccccccchhhhHHHH-HHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEE--EeCCchhhh
Q 039455 99 QEQLLSEVLMERNLIIWDVHKGINLI-RWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIII--TTRDEHVLK 173 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~--tsr~~~~~~ 173 (216)
+.++ +.- .....+++.+|++|++... .+-+.+++... .|.-++| ||-++.+.-
T Consensus 90 -r~i~------------------e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE---~G~iilIGATTENPsF~l 147 (436)
T COG2256 90 -REII------------------EEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVE---NGTIILIGATTENPSFEL 147 (436)
T ss_pred -HHHH------------------HHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhc---CCeEEEEeccCCCCCeee
Confidence 1111 111 1223377899999999754 34455555543 4544443 666665522
Q ss_pred c---cCCcceEEecCCChHHHHHHHhhhh
Q 039455 174 G---HGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 174 ~---~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
+ +....+++++||+.++..+++.+..
T Consensus 148 n~ALlSR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 148 NPALLSRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred cHHHhhhhheeeeecCCHHHHHHHHHHHH
Confidence 2 2345899999999999999998833
No 17
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.29 E-value=4.2e-11 Score=97.98 Aligned_cols=168 Identities=17% Similarity=0.236 Sum_probs=97.9
Q ss_pred CcccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV 91 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
.....+.|+++++++|...+... -.....++|+||+|+|||++|+.+++.....|..+ . .
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v--~---~---- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV--V---G---- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEec--c---h----
Confidence 34567899999999998876421 12245799999999999999999998765432111 0 0
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCCC
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHDW 155 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~~ 155 (216)
..+.....+. ........+...-...+.+|+|||++.. ..+..++..+..
T Consensus 190 --------~~l~~~~~g~------~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~ 255 (364)
T TIGR01242 190 --------SELVRKYIGE------GARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDG 255 (364)
T ss_pred --------HHHHHHhhhH------HHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhC
Confidence 0111110000 0011112222223356789999998754 112333322211
Q ss_pred --CCCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcCCCCCc-hhHhhhc
Q 039455 156 --FGFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSKGKQPT-DDRVELS 213 (216)
Q Consensus 156 --~~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~~~~~~-~~~~~l~ 213 (216)
...+..+|.||+....... ...+..+.+++.+.++..++|+.+......+. -.+.+++
T Consensus 256 ~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la 321 (364)
T TIGR01242 256 FDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIA 321 (364)
T ss_pred CCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHH
Confidence 1235677888875533221 12356899999999999999998775544222 2444444
No 18
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=8.7e-11 Score=101.59 Aligned_cols=182 Identities=13% Similarity=0.116 Sum_probs=103.7
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 101 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
|..-++++|.+..++.|.+++..+ .-...++++|+.|+||||+++.++..+..... ..... +. ....+..
T Consensus 12 PqtFdEVIGQe~Vv~~L~~aL~~g-RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~-~~~~P-CG-------~C~sCr~ 81 (830)
T PRK07003 12 PKDFASLVGQEHVVRALTHALDGG-RLHHAYLFTGTRGVGKTTLSRIFAKALNCETG-VTSQP-CG-------VCRACRE 81 (830)
T ss_pred CCcHHHHcCcHHHHHHHHHHHhcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCccC-CCCCC-Cc-------ccHHHHH
Confidence 345667999999999999998754 23456789999999999999999987642110 00000 00 0001111
Q ss_pred HHHH----HHhhccccccchhhhHHHHHH----HhCCceEEEEEeCCCCHH--HHHHhhcCCCCCCCCcEEEEEeCCchh
Q 039455 102 LLSE----VLMERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQLE--QLQALAGNHDWFGFGSRIIITTRDEHV 171 (216)
Q Consensus 102 l~~~----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~il~tsr~~~~ 171 (216)
+... +...........+.....+.. ...++.-++|||+++.+. .++.++..+..-..+..+|++|++.+-
T Consensus 82 I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~K 161 (830)
T PRK07003 82 IDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQK 161 (830)
T ss_pred HhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhh
Confidence 1000 000000000011111111111 112345689999998663 466666655433456778888876542
Q ss_pred -hhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 172 -LKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 172 -~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
...+ .....|++++++.++..+.|.+.+...+ .+++.++.|+
T Consensus 162 Ip~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA 207 (830)
T PRK07003 162 IPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLA 207 (830)
T ss_pred ccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 2222 2237899999999999999988765444 3345555544
No 19
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.28 E-value=3.3e-10 Score=88.90 Aligned_cols=144 Identities=22% Similarity=0.188 Sum_probs=78.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHH----H
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINL----I 124 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----l 124 (216)
...++|+|++|+|||||++.++..+...-....|+... ......+...++..+.... ...+....... +
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~-----~~~~~~~l~~i~~~lG~~~--~~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNT-----RVDAEDLLRMVAADFGLET--EGRDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCC-----CCCHHHHHHHHHHHcCCCC--CCCCHHHHHHHHHHHH
Confidence 46899999999999999999998776321122232211 1233344555554442221 11111111222 2
Q ss_pred HHH-hCCceEEEEEeCCCCHH--HHHHhh--cCCC-CCCCCcEEEEEeCCchhhhcc----------CCcceEEecCCCh
Q 039455 125 RWR-LCRKRVLVVLDDVDQLE--QLQALA--GNHD-WFGFGSRIIITTRDEHVLKGH----------GVTNIYKVRGLDY 188 (216)
Q Consensus 125 ~~~-l~~~~~llvlDd~~~~~--~~~~l~--~~~~-~~~~~~~il~tsr~~~~~~~~----------~~~~~~~l~~l~~ 188 (216)
... ..+++.+||+||++... .+..+. ..+. .......+++|.... +...+ .....+.++|++.
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~ 194 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDR 194 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCH
Confidence 222 25678899999997653 333322 1111 111223455555432 22111 1245789999999
Q ss_pred HHHHHHHhhhhc
Q 039455 189 VEALQLFHLKVS 200 (216)
Q Consensus 189 ~~~~~ll~~~~~ 200 (216)
++..+++.....
T Consensus 195 ~e~~~~l~~~l~ 206 (269)
T TIGR03015 195 EETREYIEHRLE 206 (269)
T ss_pred HHHHHHHHHHHH
Confidence 999999987653
No 20
>PF13173 AAA_14: AAA domain
Probab=99.28 E-value=1.9e-11 Score=85.28 Aligned_cols=120 Identities=20% Similarity=0.199 Sum_probs=77.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL 128 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 128 (216)
.++++|.|+.|+|||||++.++.... ......++. ..+.. . .... ..+ ..+.+.+..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~---~-----~~~~------------~~~-~~~~~~~~~ 58 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPR---D-----RRLA------------DPD-LLEYFLELI 58 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHH---H-----HHHh------------hhh-hHHHHHHhh
Confidence 47899999999999999999998765 223444443 11100 0 0000 000 122233333
Q ss_pred CCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc------cCCcceEEecCCChHHH
Q 039455 129 CRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG------HGVTNIYKVRGLDYVEA 191 (216)
Q Consensus 129 ~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~------~~~~~~~~l~~l~~~~~ 191 (216)
..++.+|+||++.....|...+..+.+..+..+|++|++....... .+....+++.||+.+|.
T Consensus 59 ~~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 59 KPGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred ccCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 3467899999999888887777666554556899999987654422 12346789999998874
No 21
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.25 E-value=7e-11 Score=90.37 Aligned_cols=157 Identities=18% Similarity=0.239 Sum_probs=89.6
Q ss_pred cccccc--chhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH
Q 039455 25 VDGLVG--IASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL 102 (216)
Q Consensus 25 ~~~~vg--R~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (216)
-++|++ .+..++.+.+++.. .....+.|+|++|+|||+|++.++.+..+......++. +.... .....+
T Consensus 14 ~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~------~~~~~~ 84 (226)
T TIGR03420 14 FDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELA------QADPEV 84 (226)
T ss_pred hcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHH------HhHHHH
Confidence 345663 44567777777653 34579999999999999999999987654433444443 11110 000000
Q ss_pred HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH---H-HHHhhcCCCC-CCCCcEEEEEeCCch-------
Q 039455 103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE---Q-LQALAGNHDW-FGFGSRIIITTRDEH------- 170 (216)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~---~-~~~l~~~~~~-~~~~~~il~tsr~~~------- 170 (216)
...+. +.-+|+|||++... . ...+...+.. ...+..+|+|++...
T Consensus 85 ----------------------~~~~~-~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 85 ----------------------LEGLE-QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred ----------------------Hhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence 01111 22389999997543 1 2223222211 023356888887432
Q ss_pred --hhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 171 --VLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 171 --~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
+.+.......++++|++.++...++.......+ .+++.++.|+
T Consensus 142 ~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~ 188 (226)
T TIGR03420 142 PDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLL 188 (226)
T ss_pred HHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 122222246899999999999999987653322 3444444443
No 22
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=99.23 E-value=5.8e-11 Score=87.79 Aligned_cols=50 Identities=28% Similarity=0.476 Sum_probs=35.3
Q ss_pred ccccchhHHHHHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 27 GLVGIASRMEKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 27 ~~vgR~~~~~~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
.|+||+.+++++...+. ......+.++|+|++|+|||+|++.+...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999985 224557899999999999999999999877765
No 23
>PRK04195 replication factor C large subunit; Provisional
Probab=99.23 E-value=1.5e-10 Score=98.01 Aligned_cols=168 Identities=20% Similarity=0.252 Sum_probs=100.3
Q ss_pred CCcccccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQ 99 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (216)
|....+++|++...+.+..|+..- +...+.+.|+||+|+||||+|+.+++.+. +.... +. .+. ... ...+
T Consensus 10 P~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~~ie-ln-asd---~r~-~~~i 81 (482)
T PRK04195 10 PKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WEVIE-LN-ASD---QRT-ADVI 81 (482)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CCEEE-Ec-ccc---ccc-HHHH
Confidence 455677999999999999998742 22368999999999999999999998763 22221 11 111 111 1112
Q ss_pred HHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH------HHHHhhcCCCCCCCCcEEEEEeCCchhhh
Q 039455 100 EQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE------QLQALAGNHDWFGFGSRIIITTRDEHVLK 173 (216)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~------~~~~l~~~~~~~~~~~~il~tsr~~~~~~ 173 (216)
..++....... ..+..++.+|||||++... .+..+...+. ..++.+|+++.+..-..
T Consensus 82 ~~~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~ 144 (482)
T PRK04195 82 ERVAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPS 144 (482)
T ss_pred HHHHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccc
Confidence 22221111000 0111356799999997652 2344433332 23456777776542211
Q ss_pred ---ccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 174 ---GHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 174 ---~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
.......+++++++.++....+.+.+...+ .+++.++.|++
T Consensus 145 ~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~ 190 (482)
T PRK04195 145 LRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAE 190 (482)
T ss_pred hhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 122457899999999999999988764444 34455555543
No 24
>PLN03025 replication factor C subunit; Provisional
Probab=99.22 E-value=1.6e-10 Score=92.92 Aligned_cols=172 Identities=17% Similarity=0.253 Sum_probs=96.2
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-CCceEeeccccccccccCchHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQE 100 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 100 (216)
|..-.+++|.++.++.|..++..+ +.+.+.++||+|+||||+|..++..+... +.....-.+.++ ..+. ....
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd---~~~~-~~vr 82 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASD---DRGI-DVVR 82 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccc---cccH-HHHH
Confidence 455677999999999998887753 34678999999999999999999876332 211111000110 1111 1111
Q ss_pred HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH--HHHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-C
Q 039455 101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE--QLQALAGNHDWFGFGSRIIITTRDEH-VLKGH-G 176 (216)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~~-~ 176 (216)
.....+.... . ....++.-+++|||++... ....+...+......+.+++++.... +...+ .
T Consensus 83 ~~i~~~~~~~-~-------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 83 NKIKMFAQKK-V-------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred HHHHHHHhcc-c-------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 1111100000 0 0001346799999998652 22233222222234566777775432 21111 1
Q ss_pred CcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 177 VTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 177 ~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
....+++++++.++....+...+-..+ .+++.++.|+
T Consensus 149 Rc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~ 187 (319)
T PLN03025 149 RCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAII 187 (319)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 236799999999999999987764444 3344555443
No 25
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=5.2e-10 Score=91.43 Aligned_cols=180 Identities=16% Similarity=0.127 Sum_probs=99.3
Q ss_pred CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL 102 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (216)
..-.+++|.+...+.|...+..+ .-...+.++||+|+||||+|+.++..+........ . +-.....+..+
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~-~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~---~------pc~~c~~c~~~ 82 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLG-RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS---N------PCRKCIICKEI 82 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcC-CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC---C------CCCCCHHHHHH
Confidence 34567899999999999988753 23456799999999999999999987642110000 0 00000001111
Q ss_pred HHHHHh----hccccccchhhhHHHHHHH-----hCCceEEEEEeCCCCHH--HHHHhhcCCCCCCCCcEEEEEeCCch-
Q 039455 103 LSEVLM----ERNLIIWDVHKGINLIRWR-----LCRKRVLVVLDDVDQLE--QLQALAGNHDWFGFGSRIIITTRDEH- 170 (216)
Q Consensus 103 ~~~~~~----~~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~il~tsr~~~- 170 (216)
...... .........+. ...+... ..++.-++||||++... .+..++..+..-.....+|++|.+..
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred hcCCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 000000 00000001111 1111111 12345699999998664 45556655543345566777665543
Q ss_pred hhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
+...+ +....++++|++.++..+++...+...+ .+++.++.|+
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia 207 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIA 207 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 32222 2247899999999999999987554333 3344444443
No 26
>PRK09087 hypothetical protein; Validated
Probab=99.21 E-value=8.1e-11 Score=89.84 Aligned_cols=125 Identities=14% Similarity=0.143 Sum_probs=79.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL 128 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 128 (216)
.+.+.|+|++|+|||||++.++.... ..|++. . .+...+...+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-~---------~~~~~~~~~~---------------------- 86 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-N---------EIGSDAANAA---------------------- 86 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-H---------HcchHHHHhh----------------------
Confidence 46799999999999999999886532 224431 0 0111111110
Q ss_pred CCceEEEEEeCCCCH----HHHHHhhcCCCCCCCCcEEEEEeCC---------chhhhccCCcceEEecCCChHHHHHHH
Q 039455 129 CRKRVLVVLDDVDQL----EQLQALAGNHDWFGFGSRIIITTRD---------EHVLKGHGVTNIYKVRGLDYVEALQLF 195 (216)
Q Consensus 129 ~~~~~llvlDd~~~~----~~~~~l~~~~~~~~~~~~il~tsr~---------~~~~~~~~~~~~~~l~~l~~~~~~~ll 195 (216)
.+ -+|++||++.. +.+..+..... ..+..+|+|++. +.+.+++.....+++++++.++..+++
T Consensus 87 ~~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL 162 (226)
T PRK09087 87 AE--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVI 162 (226)
T ss_pred hc--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHH
Confidence 01 27889999643 33333333332 346788988873 345556667799999999999999999
Q ss_pred hhhhcCCC--CCchhHhhhcc
Q 039455 196 HLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 196 ~~~~~~~~--~~~~~~~~l~~ 214 (216)
++.+-..+ .+++.++.|++
T Consensus 163 ~~~~~~~~~~l~~ev~~~La~ 183 (226)
T PRK09087 163 FKLFADRQLYVDPHVVYYLVS 183 (226)
T ss_pred HHHHHHcCCCCCHHHHHHHHH
Confidence 98874433 45556655554
No 27
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.21 E-value=1.6e-10 Score=92.37 Aligned_cols=51 Identities=25% Similarity=0.450 Sum_probs=41.7
Q ss_pred ccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 25 VDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
-.+|+|+++.++.|..++... ......++++||+|+|||+|++.+++.+..
T Consensus 3 ~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999888632 233467899999999999999999987653
No 28
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=5.5e-10 Score=95.64 Aligned_cols=182 Identities=16% Similarity=0.141 Sum_probs=102.6
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 101 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
|..-.+++|.+...+.|.+++..+ .-...++++||+|+||||+|+.++..+..... .. .. .-.....+..
T Consensus 11 PktFddVIGQe~vv~~L~~aI~~g-rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~-~~----pCg~C~sC~~ 80 (702)
T PRK14960 11 PRNFNELVGQNHVSRALSSALERG-RLHHAYLFTGTRGVGKTTIARILAKCLNCETG----VT-ST----PCEVCATCKA 80 (702)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CC-CC----CCccCHHHHH
Confidence 345667999999999999998854 23468899999999999999999987642110 00 00 0000000000
Q ss_pred HHHH----HHhhccccccchhhhHHHHH----HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCchh
Q 039455 102 LLSE----VLMERNLIIWDVHKGINLIR----WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEHV 171 (216)
Q Consensus 102 l~~~----~~~~~~~~~~~~~~~~~~l~----~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~~ 171 (216)
+... +...........+.....+. ....++.-++|||+++.+ .....++..+..-..+..+|++|.+..-
T Consensus 81 I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~k 160 (702)
T PRK14960 81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160 (702)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHh
Confidence 0000 00000000001111111111 112345679999999865 4555566555433456678887776532
Q ss_pred -hhc-cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 172 -LKG-HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 172 -~~~-~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
... ......+++++++.++..+.+.+.+...+ ..++.+..|+
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA 206 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIA 206 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 111 12348899999999999999987764444 3344555554
No 29
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.20 E-value=2.1e-10 Score=92.57 Aligned_cols=54 Identities=28% Similarity=0.482 Sum_probs=44.0
Q ss_pred CCcccccccchhHHHHHHHHHhc---CCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEA---GLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~---~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
|....+|+||+..++.+..++.. .......++|+||+|+|||+||+.+++.+..
T Consensus 21 P~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 21 PKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred cCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 44567899999999999887763 2334568999999999999999999998753
No 30
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.20 E-value=7.2e-10 Score=93.75 Aligned_cols=183 Identities=16% Similarity=0.109 Sum_probs=101.5
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC--CCceEeeccccc-cc--cccCch
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLANVRE-VS--VTRGLV 96 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~--~~~~~~~~~~~~-~~--~~~~~~ 96 (216)
|..-++++|.+...+.|..++... .-...++++||+|+||||+|+.++..+... .+...|.+.... .. ...++.
T Consensus 10 P~~~~dvvGq~~v~~~L~~~i~~~-~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~ 88 (504)
T PRK14963 10 PITFDEVVGQEHVKEVLLAALRQG-RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL 88 (504)
T ss_pred CCCHHHhcChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE
Confidence 344567899999999999988764 234567999999999999999999876421 111222110000 00 000000
Q ss_pred HHHHHHHHHHHhhccccccchhhhHHHHHH-HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hh
Q 039455 97 PLQEQLLSEVLMERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VL 172 (216)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~ 172 (216)
.+- ................+.. .+.+++-++|||+++.. +.+..++..+..-.....+|++++... +.
T Consensus 89 el~--------~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~ 160 (504)
T PRK14963 89 EID--------AASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMP 160 (504)
T ss_pred Eec--------ccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCC
Confidence 000 0000000001111111111 12345679999999855 446666655543334555666665442 22
Q ss_pred hcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 173 KGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 173 ~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
..+ .....+++.+++.++..+++.+.+-..+ .+++.+..|+
T Consensus 161 ~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia 204 (504)
T PRK14963 161 PTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVA 204 (504)
T ss_pred hHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 222 2346899999999999999998765444 2344455444
No 31
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.20 E-value=6.1e-10 Score=101.21 Aligned_cols=165 Identities=15% Similarity=0.178 Sum_probs=100.7
Q ss_pred CCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHH
Q 039455 21 FPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQE 100 (216)
Q Consensus 21 ~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (216)
+|+.+..++-|..-++.+... ...++++|+||+|.||||++..+.... +.+.|++.-.. ..+...+..
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~l~~~---d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYSLDES---DNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEecCcc---cCCHHHHHH
Confidence 566677889998766666432 346899999999999999999998642 26889973222 223344445
Q ss_pred HHHHHHHhhcccc------------ccchhhhHHHHHHHhC--CceEEEEEeCCCCHH------HHHHhhcCCCCCCCCc
Q 039455 101 QLLSEVLMERNLI------------IWDVHKGINLIRWRLC--RKRVLVVLDDVDQLE------QLQALAGNHDWFGFGS 160 (216)
Q Consensus 101 ~l~~~~~~~~~~~------------~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~------~~~~l~~~~~~~~~~~ 160 (216)
.++..+....... ..+.......+...+. ..+++|||||++..+ .+..++... ..+.
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~---~~~~ 153 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQ---PENL 153 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhC---CCCe
Confidence 5555553221110 0111222223333332 579999999996542 334444433 3567
Q ss_pred EEEEEeCCchhhh--cc-CCcceEEec----CCChHHHHHHHhhhhc
Q 039455 161 RIIITTRDEHVLK--GH-GVTNIYKVR----GLDYVEALQLFHLKVS 200 (216)
Q Consensus 161 ~il~tsr~~~~~~--~~-~~~~~~~l~----~l~~~~~~~ll~~~~~ 200 (216)
.+|+|||...-.. .+ ......++. +|+.+|+.+||....+
T Consensus 154 ~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~ 200 (903)
T PRK04841 154 TLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLS 200 (903)
T ss_pred EEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccC
Confidence 8889999742211 11 123345566 9999999999987653
No 32
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=2.8e-10 Score=94.54 Aligned_cols=182 Identities=14% Similarity=0.106 Sum_probs=102.5
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC-ceEeeccccccccccCchHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE-ASSFLANVREVSVTRGLVPLQE 100 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 100 (216)
|..-.+++|.+..++.|..++..+. -...++++||+|+||||+|+.++..+....+ .......+. .+.
T Consensus 14 P~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~----------sC~ 82 (484)
T PRK14956 14 PQFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT----------SCL 82 (484)
T ss_pred CCCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc----------HHH
Confidence 3445678999999999999887542 2356899999999999999999987643211 000000000 000
Q ss_pred HHHHH----HHh---hccccccchhhhHHHHHH-HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-
Q 039455 101 QLLSE----VLM---ERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE- 169 (216)
Q Consensus 101 ~l~~~----~~~---~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~- 169 (216)
.+... +.. .......+.......+.. ...++.-++|||+++.+ +.+..++..+..-.....+|++|.+.
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~ 162 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFH 162 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChh
Confidence 11000 000 000000011111111111 12345679999999865 45777776665323455555555543
Q ss_pred hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 170 HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 170 ~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
.+...+ .....+.+++++.++..+++.+.+...+ ..++.+..|++
T Consensus 163 kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~ 210 (484)
T PRK14956 163 KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAK 210 (484)
T ss_pred hccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 232222 1236799999999999999988765444 34455555543
No 33
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=6.3e-10 Score=95.11 Aligned_cols=173 Identities=14% Similarity=0.121 Sum_probs=98.8
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCc----eEeeccccccccccCchH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA----SSFLANVREVSVTRGLVP 97 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ 97 (216)
|..-+++||.+...+.|.+++..+ .-...++++|+.|+||||+++.++..+...-+. ...-. + ....
T Consensus 12 PqtFddVIGQe~vv~~L~~al~~g-RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P-C-------G~C~ 82 (700)
T PRK12323 12 PRDFTTLVGQEHVVRALTHALEQQ-RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP-C-------GQCR 82 (700)
T ss_pred CCcHHHHcCcHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC-C-------cccH
Confidence 344567999999999999988754 234577999999999999999999876431100 00000 0 0000
Q ss_pred HHHHHHHH----HHhhccccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeC
Q 039455 98 LQEQLLSE----VLMERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTR 167 (216)
Q Consensus 98 ~~~~l~~~----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr 167 (216)
.+..+... +...........+...+.+.. ...++..++|||+++.+ ..++.|+..+..-..++.+|++|.
T Consensus 83 sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred HHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 11111000 000000000111221221111 12345679999999865 556777776654345667776666
Q ss_pred Cch-hhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC
Q 039455 168 DEH-VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK 203 (216)
Q Consensus 168 ~~~-~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~ 203 (216)
+.. +...+ .....+.+++++.++..+.+.+.+...+
T Consensus 163 ep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg 200 (700)
T PRK12323 163 DPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG 200 (700)
T ss_pred ChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC
Confidence 543 32222 1237899999999999999887654433
No 34
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.19 E-value=6.8e-10 Score=97.78 Aligned_cols=170 Identities=14% Similarity=0.128 Sum_probs=95.2
Q ss_pred CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-----CceEeeccccccccc-cCch
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVSVT-RGLV 96 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~ 96 (216)
..-.+++|.+..++.|.+++..+ .-...++++||+|+||||+|+.++..+.... ++...-.|..-.... ..+.
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~-rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~Dvi 91 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQ-RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLI 91 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEE
Confidence 34567999999999999988753 2335568999999999999999998765321 110000000000000 0000
Q ss_pred HHHHHHHHHHHhhccccccchhhhHHHHH-HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hh
Q 039455 97 PLQEQLLSEVLMERNLIIWDVHKGINLIR-WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VL 172 (216)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~ 172 (216)
.+ .............+...+. ....++.-++|||+++.+ +.+..|+..+..-...+++|++|.+.. +.
T Consensus 92 Ei--------dAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 92 EV--------DAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred Ee--------ccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 00 0000000000111111111 112356679999999865 456666665543345566666665543 33
Q ss_pred hcc-CCcceEEecCCChHHHHHHHhhhhcC
Q 039455 173 KGH-GVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 173 ~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
..+ .....+++++|+.++..+++...+-.
T Consensus 164 ~TIlSRCq~f~fkpLs~eEI~~~L~~il~~ 193 (944)
T PRK14949 164 VTVLSRCLQFNLKSLTQDEIGTQLNHILTQ 193 (944)
T ss_pred HHHHHhheEEeCCCCCHHHHHHHHHHHHHH
Confidence 221 22378999999999999999876533
No 35
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=99.19 E-value=8.6e-11 Score=82.07 Aligned_cols=114 Identities=22% Similarity=0.250 Sum_probs=71.4
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCC-----CCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGIN 122 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 122 (216)
+.+.+.|+|++|+|||++++.++..+... -..+.|+.+.. ......+...++..+...... ..+...+..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS----SRTPRDFAQEILEALGLPLKS-RQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH----HSSHHHHHHHHHHHHT-SSSS-TS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC----CCCHHHHHHHHHHHhCccccc-cCCHHHHHH
Confidence 45789999999999999999999876542 24455665322 336667777777776655433 234455556
Q ss_pred HHHHHhCCc-eEEEEEeCCCCH-H--HHHHhhcCCCCCCCCcEEEEEeCC
Q 039455 123 LIRWRLCRK-RVLVVLDDVDQL-E--QLQALAGNHDWFGFGSRIIITTRD 168 (216)
Q Consensus 123 ~l~~~l~~~-~~llvlDd~~~~-~--~~~~l~~~~~~~~~~~~il~tsr~ 168 (216)
.+.+.+... ..+|||||++.. + .+..+...+. ..+.++|++.+.
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 677777654 469999999876 2 2333433222 566788888776
No 36
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.18 E-value=5.6e-10 Score=93.26 Aligned_cols=166 Identities=15% Similarity=0.131 Sum_probs=95.0
Q ss_pred ccccchhHHH--HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeeccccccccccCchHHHHHH
Q 039455 27 GLVGIASRME--KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQL 102 (216)
Q Consensus 27 ~~vgR~~~~~--~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 102 (216)
+.+|-..... ....+....+ ....+.|+|++|+|||+|++.+++.+.+..+ .+.|+. . ..+...+
T Consensus 107 Fv~g~~n~~a~~~~~~~~~~~~-~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~---------~~f~~~~ 175 (440)
T PRK14088 107 FVVGPGNSFAYHAALEVAKNPG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-S---------EKFLNDL 175 (440)
T ss_pred cccCCchHHHHHHHHHHHhCcC-CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHH
Confidence 3447655443 2333333222 2456999999999999999999998766543 344443 1 1223333
Q ss_pred HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------HHHHHhhcCCCCCCCCcEEEEEeC-Cchh---
Q 039455 103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------EQLQALAGNHDWFGFGSRIIITTR-DEHV--- 171 (216)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------~~~~~l~~~~~~~~~~~~il~tsr-~~~~--- 171 (216)
...+... . ...+......+.-+|+|||++.. +.+..++..+. ..+..+|+||+ .+..
T Consensus 176 ~~~~~~~------~----~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~--~~~k~iIitsd~~p~~l~~ 243 (440)
T PRK14088 176 VDSMKEG------K----LNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELH--DSGKQIVICSDREPQKLSE 243 (440)
T ss_pred HHHHhcc------c----HHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHH--HcCCeEEEECCCCHHHHHH
Confidence 3322111 1 11222233334568999999743 12222322222 23457888774 4322
Q ss_pred -----hhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhccc
Q 039455 172 -----LKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSKC 215 (216)
Q Consensus 172 -----~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~~ 215 (216)
.+++.....++++|.+.+...+++++.+...+ .+++.+..|++.
T Consensus 244 l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~ 294 (440)
T PRK14088 244 FQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAEN 294 (440)
T ss_pred HHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 23334556899999999999999998874333 455666666543
No 37
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.18 E-value=7.5e-10 Score=78.27 Aligned_cols=123 Identities=21% Similarity=0.175 Sum_probs=70.8
Q ss_pred ccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHh
Q 039455 29 VGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLM 108 (216)
Q Consensus 29 vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 108 (216)
+||+..++.+...+... ....+.|+|++|+|||++++.++..+......+.++..... ..... ....... .
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~----~~~~~-~~~~~~~-~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDL----LEGLV-VAELFGH-F- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhh----hhhhH-HHHHhhh-h-
Confidence 47888999998887652 34789999999999999999999987543344445432111 00000 0000000 0
Q ss_pred hccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-----HHHHHhhcCCCCC---CCCcEEEEEeCCch
Q 039455 109 ERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-----EQLQALAGNHDWF---GFGSRIIITTRDEH 170 (216)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----~~~~~l~~~~~~~---~~~~~il~tsr~~~ 170 (216)
............++.+|++||++.. ..+..++..+... ..++.+|+|++...
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 0111112223346789999999854 2233333333211 35678888888654
No 38
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.18 E-value=3.6e-10 Score=93.91 Aligned_cols=146 Identities=23% Similarity=0.364 Sum_probs=86.9
Q ss_pred CCcccccccchhHHHH---HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455 22 PSAVDGLVGIASRMEK---MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~---l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (216)
|....+++|++..+.. |..++... ....++|+||+|+||||||+.+++.....|. .+.... ... ..
T Consensus 8 P~~l~d~vGq~~~v~~~~~L~~~i~~~--~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~a~~-----~~~-~~ 76 (413)
T PRK13342 8 PKTLDEVVGQEHLLGPGKPLRRMIEAG--RLSSMILWGPPGTGKTTLARIIAGATDAPFE---ALSAVT-----SGV-KD 76 (413)
T ss_pred CCCHHHhcCcHHHhCcchHHHHHHHcC--CCceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEeccc-----ccH-HH
Confidence 3456679999998776 77777653 3468899999999999999999987654321 111000 000 11
Q ss_pred HHHHHHHHHhhccccccchhhhHHHHHH-HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEE-E-eCCchh--
Q 039455 99 QEQLLSEVLMERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIII-T-TRDEHV-- 171 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~-t-sr~~~~-- 171 (216)
...++. .... ...++..+|+|||++.. .+.+.++..+. .+..+++ + |.++..
T Consensus 77 ir~ii~------------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l 135 (413)
T PRK13342 77 LREVIE------------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEV 135 (413)
T ss_pred HHHHHH------------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhc
Confidence 111111 1111 11346789999999865 33444444433 2333333 3 333321
Q ss_pred hh-ccCCcceEEecCCChHHHHHHHhhhh
Q 039455 172 LK-GHGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 172 ~~-~~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
.. .......+.+++++.++..+++.+..
T Consensus 136 ~~aL~SR~~~~~~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 136 NPALLSRAQVFELKPLSEEDIEQLLKRAL 164 (413)
T ss_pred cHHHhccceeeEeCCCCHHHHHHHHHHHH
Confidence 11 11223789999999999999998765
No 39
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.17 E-value=6.3e-10 Score=93.10 Aligned_cols=167 Identities=15% Similarity=0.207 Sum_probs=94.4
Q ss_pred ccccchhHH--HHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeeccccccccccCchHHHHHH
Q 039455 27 GLVGIASRM--EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQL 102 (216)
Q Consensus 27 ~~vgR~~~~--~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 102 (216)
+.+|..... .....+....+.....+.|+|+.|+|||+|++.+++.+....+ .+.++. ...+...+
T Consensus 117 Fv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~ 186 (450)
T PRK14087 117 FVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKA 186 (450)
T ss_pred ccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHH
Confidence 455765542 2233333333333467999999999999999999987654322 233332 12233333
Q ss_pred HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------HHHHHhhcCCCCCCCCcEEEEEeCCc------
Q 039455 103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------EQLQALAGNHDWFGFGSRIIITTRDE------ 169 (216)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------~~~~~l~~~~~~~~~~~~il~tsr~~------ 169 (216)
...+.... .....+...+. +.-+|+|||++.. +.+..++..+. ..+..+|+|+...
T Consensus 187 ~~~l~~~~--------~~~~~~~~~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~--~~~k~iIltsd~~P~~l~~ 255 (450)
T PRK14087 187 VDILQKTH--------KEIEQFKNEIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFI--ENDKQLFFSSDKSPELLNG 255 (450)
T ss_pred HHHHHHhh--------hHHHHHHHHhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHH--HcCCcEEEECCCCHHHHhh
Confidence 33322110 11122333232 3348999999643 22333333322 3455788887643
Q ss_pred ---hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC----CCchhHhhhcc
Q 039455 170 ---HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK----QPTDDRVELSK 214 (216)
Q Consensus 170 ---~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~----~~~~~~~~l~~ 214 (216)
.+.+++...-.+++++++.++..+++++.+-..+ .+++.++.|+.
T Consensus 256 l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~ 307 (450)
T PRK14087 256 FDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISN 307 (450)
T ss_pred ccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Confidence 2344445677899999999999999998774332 34455555543
No 40
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.17 E-value=1e-09 Score=90.43 Aligned_cols=167 Identities=19% Similarity=0.236 Sum_probs=96.0
Q ss_pred cccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccc
Q 039455 24 AVDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT 92 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (216)
....+.|++++++++...+... -...+.++++||+|+|||++|+.+++.....| .. +. .
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~--i~-v~-~------ 198 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATF--IR-VV-G------ 198 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCE--EE-ee-h------
Confidence 4457889999999998876421 12356799999999999999999998764321 11 11 0
Q ss_pred cCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH------------H----HHHhhcCCCCC
Q 039455 93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE------------Q----LQALAGNHDWF 156 (216)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~------------~----~~~l~~~~~~~ 156 (216)
..+.....+ .........+...-...+.+|+|||++.+. . +..++..+...
T Consensus 199 -------~~l~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 199 -------SELVQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred -------HHHhHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 111111000 001111122222233567899999997541 1 22233222211
Q ss_pred --CCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCCC-CchhHhhhc
Q 039455 157 --GFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGKQ-PTDDRVELS 213 (216)
Q Consensus 157 --~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~~-~~~~~~~l~ 213 (216)
..+..+|.||........ + ..+..+++++.+.++..++|+.+...... ..-++..|+
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la 330 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELA 330 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHH
Confidence 234567777765543221 1 23568999999999999999987654432 223444444
No 41
>PTZ00202 tuzin; Provisional
Probab=99.16 E-value=2.1e-09 Score=87.75 Aligned_cols=168 Identities=14% Similarity=0.119 Sum_probs=99.8
Q ss_pred CCCCcccccccchhHHHHHHHHHhcC-CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455 20 TFPSAVDGLVGIASRMEKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 20 ~~~~~~~~~vgR~~~~~~l~~~l~~~-~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (216)
..|+.+..|+||++++++|...|... ......++|+|++|+|||||++.+..... ...++.+.. +..++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g~eEl 325 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------GTEDT 325 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------CHHHH
Confidence 45677889999999999999998743 23346999999999999999999997654 234443322 44677
Q ss_pred HHHHHHHHHhhccccccch-hhhHHHHHHHh-C-CceEEEEEe--CCCCHHHH-HHhhcCCCCCCCCcEEEEEeCCchh-
Q 039455 99 QEQLLSEVLMERNLIIWDV-HKGINLIRWRL-C-RKRVLVVLD--DVDQLEQL-QALAGNHDWFGFGSRIIITTRDEHV- 171 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~-~~~~~~l~~~l-~-~~~~llvlD--d~~~~~~~-~~l~~~~~~~~~~~~il~tsr~~~~- 171 (216)
+..++.++.........+. ....+.+.... . ++..+|||- +=.++.-+ .+.. .+..-..-|.|++---.+.+
T Consensus 326 Lr~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt 404 (550)
T PTZ00202 326 LRSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLT 404 (550)
T ss_pred HHHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcc
Confidence 7777777765322111111 22222333322 2 445555544 44444322 2221 11111234667654443322
Q ss_pred -hh-ccCCcceEEecCCChHHHHHHHhhh
Q 039455 172 -LK-GHGVTNIYKVRGLDYVEALQLFHLK 198 (216)
Q Consensus 172 -~~-~~~~~~~~~l~~l~~~~~~~ll~~~ 198 (216)
.+ .+.....+-+++|+.+||.++.+..
T Consensus 405 ~~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 405 IANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hhcccCccceeEecCCCCHHHHHHHHhhc
Confidence 11 1224578999999999999988654
No 42
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.16 E-value=7e-10 Score=94.62 Aligned_cols=165 Identities=13% Similarity=0.187 Sum_probs=96.4
Q ss_pred ccccchhHHH--HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC--CceEeeccccccccccCchHHHHHH
Q 039455 27 GLVGIASRME--KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQEQL 102 (216)
Q Consensus 27 ~~vgR~~~~~--~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l 102 (216)
+++|-...+. .+..+..........++|+|+.|+|||+|+..+++.+...+ ..+.|+. ...+...+
T Consensus 290 FvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el 359 (617)
T PRK14086 290 FVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEF 359 (617)
T ss_pred hcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHH
Confidence 4456665533 33444433222334699999999999999999999876533 2345543 11222233
Q ss_pred HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------HHHHHhhcCCCCCCCCcEEEEEeCCc------
Q 039455 103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------EQLQALAGNHDWFGFGSRIIITTRDE------ 169 (216)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------~~~~~l~~~~~~~~~~~~il~tsr~~------ 169 (216)
...+... ....+.+.+.+ .-+|+|||++.. +.+..++..+. ..+..||+||+..
T Consensus 360 ~~al~~~----------~~~~f~~~y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~--e~gk~IIITSd~~P~eL~~ 426 (617)
T PRK14086 360 INSIRDG----------KGDSFRRRYRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLH--NANKQIVLSSDRPPKQLVT 426 (617)
T ss_pred HHHHHhc----------cHHHHHHHhhc-CCEEEEehhccccCCHHHHHHHHHHHHHHH--hcCCCEEEecCCChHhhhh
Confidence 2222111 11122222222 348999999644 22333333322 3456788888753
Q ss_pred ---hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 170 ---HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 170 ---~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
.+.+++.....++|++.+.+...++|++++...+ .+++.++.|+.
T Consensus 427 l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~ 476 (617)
T PRK14086 427 LEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIAS 476 (617)
T ss_pred ccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 3455556778999999999999999998875444 44555555554
No 43
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.15 E-value=1.6e-09 Score=87.02 Aligned_cols=170 Identities=18% Similarity=0.241 Sum_probs=95.7
Q ss_pred CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecc-ccccccccCchHHHHH
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN-VREVSVTRGLVPLQEQ 101 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 101 (216)
..-.+++|++..++.+..++..+ ..+.+.++|++|+|||++++.++..+........++.. ... .... .....
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~---~~~~-~~~~~ 87 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASD---ERGI-DVIRN 87 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccc---ccch-HHHHH
Confidence 44567999999999999998753 23468999999999999999999876432111111110 000 0111 11111
Q ss_pred HHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH--HHHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-CC
Q 039455 102 LLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE--QLQALAGNHDWFGFGSRIIITTRDEH-VLKGH-GV 177 (216)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~~-~~ 177 (216)
.+..+.... ......+-++++|+++... ....+...+......+.+|+++.... +...+ ..
T Consensus 88 ~i~~~~~~~---------------~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 88 KIKEFARTA---------------PVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHhcC---------------CCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 111100000 0011235699999997552 23333333332234566777765432 21111 12
Q ss_pred cceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 178 TNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 178 ~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
...+++++++.++...++...+...+ .+++.++.|+
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~ 190 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIY 190 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45799999999999999988764444 3444555544
No 44
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.14 E-value=9.9e-10 Score=92.34 Aligned_cols=168 Identities=13% Similarity=0.155 Sum_probs=95.0
Q ss_pred ccccchhHHH--HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCc--eEeeccccccccccCchHHHHHH
Q 039455 27 GLVGIASRME--KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQEQL 102 (216)
Q Consensus 27 ~~vgR~~~~~--~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 102 (216)
+.+|...... ....+....+.....+.|+|++|+|||+|++.+++.+.++++. +.++. . ..+...+
T Consensus 124 fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-~---------~~~~~~~ 193 (450)
T PRK00149 124 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-S---------EKFTNDF 193 (450)
T ss_pred cccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-H---------HHHHHHH
Confidence 3456555432 3344444333334679999999999999999999988766443 34443 1 1122223
Q ss_pred HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----HHHHhhcCCCCC-CCCcEEEEEeCCc--------
Q 039455 103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----QLQALAGNHDWF-GFGSRIIITTRDE-------- 169 (216)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----~~~~l~~~~~~~-~~~~~il~tsr~~-------- 169 (216)
...+... . ...+...+. +.-+|+|||++... ....++..+... ..+..+++|+...
T Consensus 194 ~~~~~~~------~----~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~ 262 (450)
T PRK00149 194 VNALRNN------T----MEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLE 262 (450)
T ss_pred HHHHHcC------c----HHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHH
Confidence 2222110 1 122222222 34489999996431 112222222111 2345577777643
Q ss_pred -hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhccc
Q 039455 170 -HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSKC 215 (216)
Q Consensus 170 -~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~~ 215 (216)
.+.+++.....+++++.+.++..+++++.+...+ .+++.++.|+..
T Consensus 263 ~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~ 311 (450)
T PRK00149 263 ERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKN 311 (450)
T ss_pred HHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcC
Confidence 1234444557899999999999999998875433 456666666653
No 45
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=2.1e-09 Score=90.29 Aligned_cols=182 Identities=15% Similarity=0.106 Sum_probs=97.4
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 101 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
|..-.+++|.+...+.|...+..+ .-...+.++||+|+||||+|+.++..+...-. ..+.. +. ....+..
T Consensus 10 P~~~~divGq~~i~~~L~~~i~~~-~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~-~~~~p-c~-------~c~~c~~ 79 (472)
T PRK14962 10 PKTFSEVVGQDHVKKLIINALKKN-SISHAYIFAGPRGTGKTTVARILAKSLNCENR-KGVEP-CN-------ECRACRS 79 (472)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccC-CCCCC-Cc-------ccHHHHH
Confidence 344567999999888888877654 23356899999999999999999987542100 00000 00 0000000
Q ss_pred HHHHH---Hhhcccc-ccchhhhHHHHHH-----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-
Q 039455 102 LLSEV---LMERNLI-IWDVHKGINLIRW-----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE- 169 (216)
Q Consensus 102 l~~~~---~~~~~~~-~~~~~~~~~~l~~-----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~- 169 (216)
+...- ....+.. ....+... .+.+ ...++.-++|+|+++.. +....++..+........++++|.++
T Consensus 80 i~~g~~~dv~el~aa~~~gid~iR-~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~ 158 (472)
T PRK14962 80 IDEGTFMDVIELDAASNRGIDEIR-KIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLE 158 (472)
T ss_pred HhcCCCCccEEEeCcccCCHHHHH-HHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChH
Confidence 00000 0000000 00011111 1111 12245679999999865 33455555544323344445555443
Q ss_pred hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 170 HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 170 ~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
.+...+ .....+++++++.++....+.+.+...+ .+++.+..|++
T Consensus 159 kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~ 206 (472)
T PRK14962 159 KVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAK 206 (472)
T ss_pred hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 222222 2347899999999999999988764333 44455665553
No 46
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.14 E-value=1e-09 Score=89.48 Aligned_cols=168 Identities=15% Similarity=0.125 Sum_probs=105.0
Q ss_pred ccccccchhHHHHHHH--HHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH
Q 039455 25 VDGLVGIASRMEKMNG--YLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL 102 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~--~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (216)
..+.+|-......-.. +-..++.....+.|+|+.|.|||+|++++++...+..+...++.... ..+...+
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s--------e~f~~~~ 158 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS--------EDFTNDF 158 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH--------HHHHHHH
Confidence 3456677666654322 22333335789999999999999999999998888877655554111 1233333
Q ss_pred HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------HHHHHhhcCCCCCCCCcEEEEEeCCc------
Q 039455 103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------EQLQALAGNHDWFGFGSRIIITTRDE------ 169 (216)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------~~~~~l~~~~~~~~~~~~il~tsr~~------ 169 (216)
+..+... ....+++.. .--++++||++.. +.+..++..+. ..+..||+|++..
T Consensus 159 v~a~~~~----------~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~--~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 159 VKALRDN----------EMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALL--ENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred HHHHHhh----------hHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHH--hcCCEEEEEcCCCchhhcc
Confidence 3332221 123333333 3338999999643 23344444333 3455899988642
Q ss_pred ---hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 170 ---HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 170 ---~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
.+.+++...-.+++.|++.+...+++++.+...+ .+++...-|+.
T Consensus 225 ~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~ 274 (408)
T COG0593 225 LEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAK 274 (408)
T ss_pred ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4456666778999999999999999999764444 45555554443
No 47
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=2.6e-09 Score=91.98 Aligned_cols=182 Identities=14% Similarity=0.109 Sum_probs=100.2
Q ss_pred CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC----ceEeeccccccccccCchHH
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE----ASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 98 (216)
..-++++|.+..++.|.+++..+ .-...+.++|+.|+||||+++.++..+...-+ ....-. + +....
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~-rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p-C-------g~C~~ 83 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQ-RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP-C-------GVCQA 83 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC-C-------CccHH
Confidence 44567899999999999988764 23456799999999999999999986642110 000000 0 00011
Q ss_pred HHHHHHH----HHhhccccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455 99 QEQLLSE----VLMERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRD 168 (216)
Q Consensus 99 ~~~l~~~----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~ 168 (216)
+..+... +...........+...+.+.. ...++.-++|||+++.+ +.++.++..+..-...+.+|++|.+
T Consensus 84 C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 84 CRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred HHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 1111000 000000000011111111111 11234569999999865 4566677666543455666666654
Q ss_pred c-hhhhc-cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 169 E-HVLKG-HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 169 ~-~~~~~-~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
. .+... ......+++++++.++..+.+.+.+...+ .+++.+..|+
T Consensus 164 ~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La 212 (618)
T PRK14951 164 PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLA 212 (618)
T ss_pred chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3 22212 22348899999999999999987664444 2333444443
No 48
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.13 E-value=1.2e-09 Score=94.14 Aligned_cols=182 Identities=16% Similarity=0.136 Sum_probs=100.1
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 101 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
|..-.+++|.+..++.|..++..+ .-...++++|++|+||||+|+.++..+..... ..+..| .. ...+..
T Consensus 12 P~tFddIIGQe~vv~~L~~ai~~~-rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~-~~~~pC-g~-------C~sCr~ 81 (709)
T PRK08691 12 PKTFADLVGQEHVVKALQNALDEG-RLHHAYLLTGTRGVGKTTIARILAKSLNCENA-QHGEPC-GV-------CQSCTQ 81 (709)
T ss_pred CCCHHHHcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCCCC-cc-------cHHHHH
Confidence 345567999999999999998854 23467899999999999999999986542211 001000 00 000000
Q ss_pred HHHH----HHhhccccccchhhhHHHHHH----HhCCceEEEEEeCCCCHH--HHHHhhcCCCCCCCCcEEEEEeCCch-
Q 039455 102 LLSE----VLMERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQLE--QLQALAGNHDWFGFGSRIIITTRDEH- 170 (216)
Q Consensus 102 l~~~----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~il~tsr~~~- 170 (216)
+... +...........+.....+.. ...++.-++|||+++.+. .+..++..+..-...+.+|++|.+..
T Consensus 82 i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~k 161 (709)
T PRK08691 82 IDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHK 161 (709)
T ss_pred HhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 0000 000000000011111111111 122456799999998663 34555554443335566777776542
Q ss_pred hhhc-cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 171 VLKG-HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 171 ~~~~-~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
+... ......+++++++.++..+.+.+.+-..+ ..++.+..|+
T Consensus 162 L~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia 207 (709)
T PRK08691 162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLG 207 (709)
T ss_pred cchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 2211 12236688999999999999987765444 3334455554
No 49
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=3e-09 Score=90.44 Aligned_cols=169 Identities=14% Similarity=0.130 Sum_probs=92.6
Q ss_pred CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeecc--cccccc--ccCch
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLAN--VREVSV--TRGLV 96 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~--~~~~~~--~~~~~ 96 (216)
..-.+++|.+..++.|...+..+ .-...+.++||.|+||||+|+.++..+..... ...+..| +..... ..++.
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~-rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQ-KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 34567899999999999988753 22356889999999999999999986542110 0000000 000000 00000
Q ss_pred HHHHHHHHHHHhhccccccchhhhHHHHH-HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-hhh
Q 039455 97 PLQEQLLSEVLMERNLIIWDVHKGINLIR-WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-HVL 172 (216)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~~~ 172 (216)
.+ . ........+.......+. ....+++-++||||++.. +....++..+..-...+.+|++|.+. .+.
T Consensus 92 ei--d------aas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil 163 (546)
T PRK14957 92 EI--D------AASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIP 163 (546)
T ss_pred Ee--e------cccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhh
Confidence 00 0 000000001111111111 112356679999999855 44555665554333456566555543 233
Q ss_pred hcc-CCcceEEecCCChHHHHHHHhhhhc
Q 039455 173 KGH-GVTNIYKVRGLDYVEALQLFHLKVS 200 (216)
Q Consensus 173 ~~~-~~~~~~~l~~l~~~~~~~ll~~~~~ 200 (216)
..+ .....+++++++.++....+.+.+-
T Consensus 164 ~tI~SRc~~~~f~~Ls~~eI~~~L~~il~ 192 (546)
T PRK14957 164 VTILSRCIQLHLKHISQADIKDQLKIILA 192 (546)
T ss_pred hhHHHheeeEEeCCCCHHHHHHHHHHHHH
Confidence 222 2348899999999999888887543
No 50
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.13 E-value=5.7e-10 Score=86.37 Aligned_cols=173 Identities=18% Similarity=0.228 Sum_probs=104.3
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC--CCCceEeeccccccccccCchHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD--QFEASSFLANVREVSVTRGLVPLQ 99 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 99 (216)
|..-++++|.+...+.|...+.. ...+..+++||+|+|||+.+..++.++.. -++..+.-.+.+. ..+....-
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd---erGisvvr 106 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD---ERGISVVR 106 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc---cccccchh
Confidence 44567899999999999998775 45689999999999999999999987643 2333332222222 11111000
Q ss_pred HHHHHHHHhhccccccchhhhHHHHHHHhC--Cce-EEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch----
Q 039455 100 EQLLSEVLMERNLIIWDVHKGINLIRWRLC--RKR-VLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH---- 170 (216)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~-~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~---- 170 (216)
..+ .++..+......... ..+ -++|||++++. +.|..+...+.+.....++++.|...+
T Consensus 107 ~Ki------------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~ 174 (346)
T KOG0989|consen 107 EKI------------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIR 174 (346)
T ss_pred hhh------------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCCh
Confidence 000 001111111100000 122 49999999876 556666655544455666666665432
Q ss_pred -hhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 171 -VLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 171 -~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
+.++ -..|.+++|.+++...-|+..+..++ .+++.++.|++
T Consensus 175 pi~SR---C~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~ 218 (346)
T KOG0989|consen 175 PLVSR---CQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAK 218 (346)
T ss_pred HHHhh---HHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 2333 36789999999999999988886666 34455555543
No 51
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.12 E-value=5.7e-10 Score=85.47 Aligned_cols=162 Identities=17% Similarity=0.221 Sum_probs=87.7
Q ss_pred cCCCCCCcccccc-cchhHH-HHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccC
Q 039455 17 LNPTFPSAVDGLV-GIASRM-EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG 94 (216)
Q Consensus 17 ~~~~~~~~~~~~v-gR~~~~-~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (216)
++...+..-++|+ |++.+. ..+..+... ......+.|+|++|+|||+|+..+++.....-..+.++.+...
T Consensus 9 ~~~~~~~~~d~f~~~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~------ 81 (227)
T PRK08903 9 LGPPPPPTFDNFVAGENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP------ 81 (227)
T ss_pred CCCCChhhhcccccCCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh------
Confidence 3334444455666 554444 345555442 2345789999999999999999999876444334455441110
Q ss_pred chHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH--HHHHhhcCCCCC-CCCc-EEEEEeCCch
Q 039455 95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE--QLQALAGNHDWF-GFGS-RIIITTRDEH 170 (216)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~-~~~~-~il~tsr~~~ 170 (216)
...+ .. ..+.-+|+|||++... ....+...+... ..+. .+++|++...
T Consensus 82 ----~~~~-----------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 82 ----LLAF-----------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred ----HHHH-----------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 0000 00 1123379999997542 112222222111 1233 3666665432
Q ss_pred h--------hhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 171 V--------LKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 171 ~--------~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
. .+.+.....++++|+++++..+++.+.....+ .+++.++.|+
T Consensus 134 ~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~ 186 (227)
T PRK08903 134 LALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLL 186 (227)
T ss_pred HhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 1 12333357899999999988888876543322 3444444443
No 52
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.11 E-value=1.7e-09 Score=89.81 Aligned_cols=167 Identities=14% Similarity=0.182 Sum_probs=93.1
Q ss_pred ccccchhHHHH--HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeeccccccccccCchHHHHHH
Q 039455 27 GLVGIASRMEK--MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQEQL 102 (216)
Q Consensus 27 ~~vgR~~~~~~--l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l 102 (216)
+.+|.+..... +..+..........+.|+|++|+|||+|++.+++.+.+..+ .+.++. . ..+...+
T Consensus 112 fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-~---------~~~~~~~ 181 (405)
T TIGR00362 112 FVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-S---------EKFTNDF 181 (405)
T ss_pred cccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-H---------HHHHHHH
Confidence 35576665432 33333332233457899999999999999999998765543 344443 1 1122233
Q ss_pred HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH---H-HHHhhcCCCCC-CCCcEEEEEeCCc-h------
Q 039455 103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE---Q-LQALAGNHDWF-GFGSRIIITTRDE-H------ 170 (216)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~---~-~~~l~~~~~~~-~~~~~il~tsr~~-~------ 170 (216)
...+... . ...+...+.+ .-+|+|||++... . ...+...+... ..+..+|+|+... .
T Consensus 182 ~~~~~~~------~----~~~~~~~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~ 250 (405)
T TIGR00362 182 VNALRNN------K----MEEFKEKYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLE 250 (405)
T ss_pred HHHHHcC------C----HHHHHHHHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhh
Confidence 3332211 1 1122222222 3489999997431 1 11222222111 2355677777642 2
Q ss_pred --hhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 171 --VLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 171 --~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
+.+++.....+++++.+.++..+++++.+...+ .+++.++.|++
T Consensus 251 ~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~ 298 (405)
T TIGR00362 251 ERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAK 298 (405)
T ss_pred hhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 233333456899999999999999998875443 45556666654
No 53
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.11 E-value=4.3e-09 Score=91.33 Aligned_cols=167 Identities=19% Similarity=0.186 Sum_probs=110.8
Q ss_pred CCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHH
Q 039455 21 FPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQE 100 (216)
Q Consensus 21 ~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (216)
+|..+.+++-|..-++.|.+. ..++.+.|+.|+|.|||||+-.++. ....-..+.|++.-.+ ..+...+..
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~---dndp~rF~~ 84 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDES---DNDPARFLS 84 (894)
T ss_pred CCCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCc---cCCHHHHHH
Confidence 455577888888777666653 4579999999999999999999998 3444578999985443 455667777
Q ss_pred HHHHHHHhhccccccc------------hhhhHHHHHHHhC--CceEEEEEeCCCCH------HHHHHhhcCCCCCCCCc
Q 039455 101 QLLSEVLMERNLIIWD------------VHKGINLIRWRLC--RKRVLVVLDDVDQL------EQLQALAGNHDWFGFGS 160 (216)
Q Consensus 101 ~l~~~~~~~~~~~~~~------------~~~~~~~l~~~l~--~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~ 160 (216)
.++..+....+....+ .......+..-+. .+++++||||.... ..+..++...+ .+.
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P---~~l 161 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAP---ENL 161 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCC---CCe
Confidence 7777766443322222 2223333343333 36899999999643 44666666553 678
Q ss_pred EEEEEeCCchhhhcc---CCcceEEec----CCChHHHHHHHhhhh
Q 039455 161 RIIITTRDEHVLKGH---GVTNIYKVR----GLDYVEALQLFHLKV 199 (216)
Q Consensus 161 ~il~tsr~~~~~~~~---~~~~~~~l~----~l~~~~~~~ll~~~~ 199 (216)
..++|||...-...- -.+..+++. .|+.+|+.++|....
T Consensus 162 ~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~ 207 (894)
T COG2909 162 TLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG 207 (894)
T ss_pred EEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence 899999986432221 122333333 488999999998765
No 54
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.11 E-value=1.5e-09 Score=84.87 Aligned_cols=164 Identities=15% Similarity=0.181 Sum_probs=87.9
Q ss_pred cccccchhHHHHHHHHHh----------c---CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC--CceEeeccccccc
Q 039455 26 DGLVGIASRMEKMNGYLE----------A---GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVS 90 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~----------~---~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~--~~~~~~~~~~~~~ 90 (216)
..++|.++..+++..+.. . ..+....++++||+|+||||+|+.++..+.... +...++. +..
T Consensus 6 ~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~~-- 82 (261)
T TIGR02881 6 SRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VER-- 82 (261)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ecH--
Confidence 347888888777754321 1 123456899999999999999999998653211 1111111 000
Q ss_pred cccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------HHHHHhhcCCCCCCCCc
Q 039455 91 VTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------EQLQALAGNHDWFGFGS 160 (216)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------~~~~~l~~~~~~~~~~~ 160 (216)
..+.....+. ........+... ...+|+|||++.+ +.+..++..+.......
T Consensus 83 ---------~~l~~~~~g~------~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~ 144 (261)
T TIGR02881 83 ---------ADLVGEYIGH------TAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEF 144 (261)
T ss_pred ---------HHhhhhhccc------hHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCE
Confidence 0111111000 011112222221 1348999999753 23444554443223334
Q ss_pred EEEEEeCCchh----------hhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhh
Q 039455 161 RIIITTRDEHV----------LKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVEL 212 (216)
Q Consensus 161 ~il~tsr~~~~----------~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l 212 (216)
.+++++...+. .+. ....+.+++++.++..+++++.+...+ .+++.+..|
T Consensus 145 ~vila~~~~~~~~~~~~~p~L~sR--f~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l 206 (261)
T TIGR02881 145 VLILAGYSDEMDYFLSLNPGLRSR--FPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKL 206 (261)
T ss_pred EEEecCCcchhHHHHhcChHHHhc--cceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHH
Confidence 45555543221 122 246799999999999999998774433 333444443
No 55
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.11 E-value=2.8e-09 Score=92.01 Aligned_cols=168 Identities=15% Similarity=0.134 Sum_probs=94.9
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 101 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
|..-.+++|.+..++.|...+..+ .-...+.++|+.|+||||+|+.++..+...... .... ++ ....+..
T Consensus 12 P~~f~divGQe~vv~~L~~~l~~~-rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~-~~~p-Cg-------~C~~C~~ 81 (647)
T PRK07994 12 PQTFAEVVGQEHVLTALANALDLG-RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGI-TATP-CG-------ECDNCRE 81 (647)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCC-CCCC-CC-------CCHHHHH
Confidence 345667999999999999988754 233557899999999999999999865432100 0000 00 0011111
Q ss_pred HHHH----HHhhccccccchhhhH---HHHH-HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-
Q 039455 102 LLSE----VLMERNLIIWDVHKGI---NLIR-WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH- 170 (216)
Q Consensus 102 l~~~----~~~~~~~~~~~~~~~~---~~l~-~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~- 170 (216)
+... +...........+... ..+. ....++.-++|||+++.+ ...+.++..+..-...+.+|++|.+..
T Consensus 82 i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~k 161 (647)
T PRK07994 82 IEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (647)
T ss_pred HHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccc
Confidence 1100 0000000000111111 1111 112356679999999855 456666655543334566666665543
Q ss_pred hhhcc-CCcceEEecCCChHHHHHHHhhhh
Q 039455 171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
+...+ .....+.+++++.++..+++...+
T Consensus 162 Ll~TI~SRC~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 162 LPVTILSRCLQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred cchHHHhhheEeeCCCCCHHHHHHHHHHHH
Confidence 33222 224889999999999999998765
No 56
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.10 E-value=1.5e-09 Score=96.16 Aligned_cols=154 Identities=16% Similarity=0.151 Sum_probs=89.9
Q ss_pred cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-C-----CceEeeccccccccccCchH
Q 039455 24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-F-----EASSFLANVREVSVTRGLVP 97 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~ 97 (216)
..++++||++++..+...|... ....++++|++|+|||++++.+++++... . ...+|..+..
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~--~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~---------- 247 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRR--KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG---------- 247 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH----------
Confidence 3457999999999999888754 23567899999999999999999987432 1 1222221111
Q ss_pred HHHHHHHHHHhhccccccchhhhHHHHHHHh-CCceEEEEEeCCCCH----------HHHHH-hhcCCCCCCCCcEEEEE
Q 039455 98 LQEQLLSEVLMERNLIIWDVHKGINLIRWRL-CRKRVLVVLDDVDQL----------EQLQA-LAGNHDWFGFGSRIIIT 165 (216)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~----------~~~~~-l~~~~~~~~~~~~il~t 165 (216)
.+... .. ...+++.....+.+.+ ..++.+|+||+++.. .+..+ +.+.+. .....+|-+
T Consensus 248 ---~l~a~----~~-~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~Iga 317 (731)
T TIGR02639 248 ---SLLAG----TK-YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGS 317 (731)
T ss_pred ---HHhhh----cc-ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEe
Confidence 11100 00 0011222222222222 345789999998633 12223 333332 223455655
Q ss_pred eCCchhhhc-------cCCcceEEecCCChHHHHHHHhhhh
Q 039455 166 TRDEHVLKG-------HGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 166 sr~~~~~~~-------~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
|...++... ...+..+++++++.++..+++++..
T Consensus 318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 554332111 1235789999999999999998544
No 57
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.10 E-value=3.4e-10 Score=86.57 Aligned_cols=59 Identities=19% Similarity=0.210 Sum_probs=43.7
Q ss_pred cchhhhHHHHHHHhCCceEEEEEeCC----C--CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 115 WDVHKGINLIRWRLCRKRVLVVLDDV----D--QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 115 ~~~~~~~~~l~~~l~~~~~llvlDd~----~--~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+..+.....++++|.+++-+++||+. | +...+-.++..+. ..|+.||++||+......+
T Consensus 141 SGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 141 SGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred CcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHhh
Confidence 33455566789999999999999966 2 3355666666665 3489999999998766654
No 58
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.10 E-value=2.9e-09 Score=88.92 Aligned_cols=165 Identities=13% Similarity=0.084 Sum_probs=94.3
Q ss_pred ccccchhHHH--HHHHHHhcC----CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHH
Q 039455 27 GLVGIASRME--KMNGYLEAG----LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQE 100 (216)
Q Consensus 27 ~~vgR~~~~~--~l~~~l~~~----~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (216)
+.+|...... ...++.... +.....+.|+|++|+|||+|++.+++.+.+....+.++. . ..+..
T Consensus 113 Fv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-~---------~~f~~ 182 (445)
T PRK12422 113 FLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-S---------ELFTE 182 (445)
T ss_pred eeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-H---------HHHHH
Confidence 4457766654 344443311 122357899999999999999999998765444455553 1 11222
Q ss_pred HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------HHHHHhhcCCCCCCCCcEEEEEeCCc----
Q 039455 101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------EQLQALAGNHDWFGFGSRIIITTRDE---- 169 (216)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------~~~~~l~~~~~~~~~~~~il~tsr~~---- 169 (216)
.+...+... ....+..... +.-+|+|||++.. +.+..++..+. ..+..+|+||...
T Consensus 183 ~~~~~l~~~----------~~~~f~~~~~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~--~~~k~IIlts~~~p~~l 249 (445)
T PRK12422 183 HLVSAIRSG----------EMQRFRQFYR-NVDALFIEDIEVFSGKGATQEEFFHTFNSLH--TEGKLIVISSTCAPQDL 249 (445)
T ss_pred HHHHHHhcc----------hHHHHHHHcc-cCCEEEEcchhhhcCChhhHHHHHHHHHHHH--HCCCcEEEecCCCHHHH
Confidence 222222110 1122333332 3448899998644 12222222221 2356788888542
Q ss_pred -----hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 170 -----HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 170 -----~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
.+.+++.....+++.+++.++..+++++.+-..+ .+++.+..|+.
T Consensus 250 ~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~ 301 (445)
T PRK12422 250 KAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIE 301 (445)
T ss_pred hhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2234444567899999999999999998774443 34455554544
No 59
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.09 E-value=3.7e-09 Score=79.24 Aligned_cols=162 Identities=17% Similarity=0.229 Sum_probs=83.3
Q ss_pred CCcccccccchhHHHHHHHHHhc---CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEA---GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~---~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (216)
|..-++|+|.++.+..+.-++.. .+.....+.++||+|+||||||..+++.....|. +.+. ... ....++
T Consensus 20 P~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~sg-~~i---~k~~dl 92 (233)
T PF05496_consen 20 PKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITSG-PAI---EKAGDL 92 (233)
T ss_dssp -SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEEC-CC-----SCHHH
T ss_pred CCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---eccc-hhh---hhHHHH
Confidence 44577899999999998776652 2345678999999999999999999998765442 2210 000 001111
Q ss_pred HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHH--HHHhhcCCCC------CC------------C
Q 039455 99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ--LQALAGNHDW------FG------------F 158 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~--~~~l~~~~~~------~~------------~ 158 (216)
..++ . .+ ++.-+|++|+++.... -+.+++.+.+ .+ +
T Consensus 93 -~~il---------------------~-~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~ 148 (233)
T PF05496_consen 93 -AAIL---------------------T-NL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLP 148 (233)
T ss_dssp -HHHH---------------------H-T---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE--
T ss_pred -HHHH---------------------H-hc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCC
Confidence 1111 1 11 2344889999976521 1112221110 01 1
Q ss_pred CcEE-EEEeCCchhhhccC--CcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 159 GSRI-IITTRDEHVLKGHG--VTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 159 ~~~i-l~tsr~~~~~~~~~--~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
..++ =.|||...+..-+. ..-..+++..+.+|..+++.+.+...+ ..++...+|++
T Consensus 149 ~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~ 209 (233)
T PF05496_consen 149 PFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIAR 209 (233)
T ss_dssp --EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHH
T ss_pred CceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 1233 35677654443332 234468999999999999998775544 44556666654
No 60
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.09 E-value=5.5e-09 Score=85.27 Aligned_cols=182 Identities=13% Similarity=0.172 Sum_probs=97.8
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-----CceEeeccccccc-cccCc
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVS-VTRGL 95 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~ 95 (216)
|...+.++|.+..++.|.+++..+ .-...+.++||+|+|||++++.++..+...- ++..+.++..-.. ...++
T Consensus 10 p~~~~~iig~~~~~~~l~~~~~~~-~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 10 PQTFEDVIGQEHIVQTLKNAIKNG-RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred CCcHhhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 445667899999999999988754 2346789999999999999999998764221 1110000000000 00000
Q ss_pred hHHHHHHHHHHHhhccccccchhhhHHHHHH-HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-h
Q 039455 96 VPLQEQLLSEVLMERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-V 171 (216)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~ 171 (216)
..+ .........+.......+.. .+.+++-++|+|+++.. .....++..+......+.+|++|.+.. +
T Consensus 89 ~~~--------~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l 160 (355)
T TIGR02397 89 IEI--------DAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKI 160 (355)
T ss_pred EEe--------eccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHH
Confidence 000 00000000000111111110 12234568999999765 445556555543334566667776554 2
Q ss_pred hhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhh
Q 039455 172 LKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVEL 212 (216)
Q Consensus 172 ~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l 212 (216)
...+ .....+++++++.++..+++...+-..+ .+++.++.|
T Consensus 161 ~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l 204 (355)
T TIGR02397 161 PATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELI 204 (355)
T ss_pred HHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 2222 2346889999999999999987653333 333444443
No 61
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=4e-09 Score=88.49 Aligned_cols=168 Identities=14% Similarity=0.141 Sum_probs=100.2
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC---------------------Cce
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF---------------------EAS 80 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~---------------------~~~ 80 (216)
|..-.+++|.+...+.|...+..+ .-...+.++||+|+||||+|+.++..+.... +.+
T Consensus 9 P~~f~dliGQe~vv~~L~~a~~~~-ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 9 PSSFKDLVGQDVLVRILRNAFTLN-KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 344567999999999998877654 2345899999999999999999998653211 111
Q ss_pred EeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHH-HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCC
Q 039455 81 SFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIR-WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFG 157 (216)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~ 157 (216)
..+...+ ...... ...+. +... ..+.++.-++|||+++.+ +.++.++..+..-.
T Consensus 88 ~eidaas----~~~vdd-IR~Ii------------------e~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp 144 (491)
T PRK14964 88 IEIDAAS----NTSVDD-IKVIL------------------ENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPA 144 (491)
T ss_pred EEEeccc----CCCHHH-HHHHH------------------HHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCC
Confidence 2211000 000000 11111 1110 012245669999999755 44666665554334
Q ss_pred CCcEEEEEeCCc-hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 158 FGSRIIITTRDE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 158 ~~~~il~tsr~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
+...+|++|.+. .+...+ .....+++++++.++..+.+.+.+...+ .+++.++.|+
T Consensus 145 ~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa 204 (491)
T PRK14964 145 PHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIA 204 (491)
T ss_pred CCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 556677666543 232222 2347899999999999999988765444 3445555554
No 62
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=5.1e-09 Score=88.45 Aligned_cols=184 Identities=15% Similarity=0.107 Sum_probs=101.7
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCc---eEeeccccccccccCchHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA---SSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 98 (216)
|..-.+++|.+..++.|...+..+ .-...+.++||+|+||||+|+.++..+....+. ..+..| .....
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~-ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C--------~~C~~ 87 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILND-RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC--------EQCTN 87 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC--------CCChH
Confidence 445567899999999998877653 234689999999999999999999876432110 000000 00000
Q ss_pred HHHHHHHH----HhhccccccchhhhHHHHH----HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455 99 QEQLLSEV----LMERNLIIWDVHKGINLIR----WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRD 168 (216)
Q Consensus 99 ~~~l~~~~----~~~~~~~~~~~~~~~~~l~----~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~ 168 (216)
+..+.... ...........+.....+. ..+.++..++||||++.. ..+..++..+..-...+.+|++|..
T Consensus 88 C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte 167 (507)
T PRK06645 88 CISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTE 167 (507)
T ss_pred HHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCC
Confidence 01110000 0000000001111111111 112345679999999865 4466666555433445566655543
Q ss_pred c-hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 169 E-HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 169 ~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
. .+...+ .....+++++++.++..+++.+.+...+ ..++.++.|++
T Consensus 168 ~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~ 217 (507)
T PRK06645 168 VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAY 217 (507)
T ss_pred hHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3 333222 2336799999999999999998775544 23345555543
No 63
>PRK06620 hypothetical protein; Validated
Probab=99.08 E-value=1.4e-09 Score=82.42 Aligned_cols=149 Identities=13% Similarity=0.034 Sum_probs=86.5
Q ss_pred CcccccccchhH--HHHHHHHHhcCCCC--eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455 23 SAVDGLVGIASR--MEKMNGYLEAGLDD--VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 23 ~~~~~~vgR~~~--~~~l~~~l~~~~~~--~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (216)
+-..+++|.... ...+..+-.....+ ...+.|+||+|+|||+|++.+++... ..++.... ..
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~-----~~~~~~~~------~~--- 79 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSN-----AYIIKDIF------FN--- 79 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccC-----CEEcchhh------hc---
Confidence 345667777333 22344444321111 26799999999999999998876542 12221000 00
Q ss_pred HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHH--HHHhhcCCCCCCCCcEEEEEeCCc-------
Q 039455 99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ--LQALAGNHDWFGFGSRIIITTRDE------- 169 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~--~~~l~~~~~~~~~~~~il~tsr~~------- 169 (216)
. . .. ...-+|++||++..++ +..+...+. ..|..+|+|++.+
T Consensus 80 -~---------------------~----~~-~~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~ 130 (214)
T PRK06620 80 -E---------------------E----IL-EKYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLP 130 (214)
T ss_pred -h---------------------h----HH-hcCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchH
Confidence 0 0 00 1223789999975532 333333332 3466788888743
Q ss_pred hhhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 170 HVLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 170 ~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
.+.+++....++++++++.++..+++++.+...+ .+++..+.|++
T Consensus 131 ~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~ 177 (214)
T PRK06620 131 DLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLV 177 (214)
T ss_pred HHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2344455567999999999999999987764332 45555555543
No 64
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=4.4e-09 Score=89.18 Aligned_cols=172 Identities=15% Similarity=0.109 Sum_probs=93.8
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 101 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
|..-.+++|.+..++.|..++..+ .-...+.++||+|+||||+|+.++..+....... .-. ++ -...+..
T Consensus 12 P~~f~divGq~~v~~~L~~~~~~~-~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~~p-Cg-------~C~~C~~ 81 (509)
T PRK14958 12 PRCFQEVIGQAPVVRALSNALDQQ-YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS-ANP-CN-------DCENCRE 81 (509)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC-CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC-ccc-CC-------CCHHHHH
Confidence 344567999999999999998754 2235689999999999999999998664211000 000 00 0000000
Q ss_pred HHHHH----HhhccccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-
Q 039455 102 LLSEV----LMERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH- 170 (216)
Q Consensus 102 l~~~~----~~~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~- 170 (216)
+...- ...........+...+.+.. ...++.-++|||+++.+ +.+..++..+..-...+.+|++|.+..
T Consensus 82 i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~k 161 (509)
T PRK14958 82 IDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHK 161 (509)
T ss_pred HhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHh
Confidence 00000 00000000011111111111 11245569999999865 456666655543345666776665542
Q ss_pred hhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC
Q 039455 171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK 203 (216)
Q Consensus 171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~ 203 (216)
+...+ .....+++++++.++....+...+-..+
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~eg 195 (509)
T PRK14958 162 LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEEN 195 (509)
T ss_pred chHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcC
Confidence 22222 2237789999999988887766553333
No 65
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.05 E-value=5.2e-09 Score=93.79 Aligned_cols=154 Identities=14% Similarity=0.103 Sum_probs=89.1
Q ss_pred CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-C-----ceEeeccccccccccCch
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-E-----ASSFLANVREVSVTRGLV 96 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~ 96 (216)
...++++||++++.++...|... ....++++|++|+|||++++.++.++.... + ..+|...++.+......
T Consensus 184 ~~ld~~iGr~~ei~~~i~~l~r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~- 260 (852)
T TIGR03345 184 GKIDPVLGRDDEIRQMIDILLRR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASV- 260 (852)
T ss_pred CCCCcccCCHHHHHHHHHHHhcC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhccccc-
Confidence 34568999999999999987754 235677999999999999999999875431 1 11221111110000000
Q ss_pred HHHHHHHHHHHhhccccccchhhhHH-HHHHHh-CCceEEEEEeCCCCHH---------HHHH-hhcCCCCCCCCcEEEE
Q 039455 97 PLQEQLLSEVLMERNLIIWDVHKGIN-LIRWRL-CRKRVLVVLDDVDQLE---------QLQA-LAGNHDWFGFGSRIII 164 (216)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~l-~~~~~llvlDd~~~~~---------~~~~-l~~~~~~~~~~~~il~ 164 (216)
..++..... .+.... .+++.+|+||+++..- +... +.+.+. .....+|-
T Consensus 261 -----------------~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~Ig 321 (852)
T TIGR03345 261 -----------------KGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIA 321 (852)
T ss_pred -----------------chHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEE
Confidence 001111111 122222 2467899999986441 2222 333332 23356676
Q ss_pred EeCCchhhhc-------cCCcceEEecCCChHHHHHHHhhh
Q 039455 165 TTRDEHVLKG-------HGVTNIYKVRGLDYVEALQLFHLK 198 (216)
Q Consensus 165 tsr~~~~~~~-------~~~~~~~~l~~l~~~~~~~ll~~~ 198 (216)
+|...++... ...+..+.+++++.+++.++|+..
T Consensus 322 aTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~ 362 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGL 362 (852)
T ss_pred ecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHH
Confidence 6665433211 124578999999999999997543
No 66
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=4.9e-09 Score=89.37 Aligned_cols=171 Identities=15% Similarity=0.128 Sum_probs=93.8
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 101 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
|..-.+++|.+...+.|..++..+ .-...+.++||+|+||||+|+.++..+..... ...-. +. ....+..
T Consensus 12 P~~f~divGq~~v~~~L~~~i~~~-~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~~~p-cg-------~C~~C~~ 81 (527)
T PRK14969 12 PKSFSELVGQEHVVRALTNALEQQ-RLHHAYLFTGTRGVGKTTLARILAKSLNCETG-VTATP-CG-------VCSACLE 81 (527)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCC-CCCCC-CC-------CCHHHHH
Confidence 345567899999999999988753 22356789999999999999999987642110 00000 00 0000000
Q ss_pred HHHH----HHhhccccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-h
Q 039455 102 LLSE----VLMERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-H 170 (216)
Q Consensus 102 l~~~----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~ 170 (216)
+... +...........+.....+.. ...++.-++|||+++.. +....++..+..-...+.+|++|.+. .
T Consensus 82 i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~k 161 (527)
T PRK14969 82 IDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQK 161 (527)
T ss_pred HhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhh
Confidence 0000 000000000011111111111 12345679999999865 34566665554434455666666543 2
Q ss_pred hhhcc-CCcceEEecCCChHHHHHHHhhhhcCC
Q 039455 171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKG 202 (216)
Q Consensus 171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~ 202 (216)
+...+ .....+++++++.++..+.+.+.+...
T Consensus 162 il~tI~SRc~~~~f~~l~~~~i~~~L~~il~~e 194 (527)
T PRK14969 162 IPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQE 194 (527)
T ss_pred CchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence 22221 123789999999999998888765333
No 67
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.04 E-value=6.2e-09 Score=85.72 Aligned_cols=168 Identities=18% Similarity=0.206 Sum_probs=97.5
Q ss_pred CcccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455 23 SAVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV 91 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
.....+.|-+...++|...+.. +-..++.+.++||+|+|||+|++.+++.....| . .+. .
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f--i-~i~--~---- 212 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF--I-RVV--G---- 212 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE--E-EEe--h----
Confidence 3456788999999988876541 112357899999999999999999998764322 1 111 0
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----------------HHHHhhcCCCC
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----------------QLQALAGNHDW 155 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~ 155 (216)
..+.....+. ........+.......+.+|+|||++..- .+..++..+..
T Consensus 213 --------s~l~~k~~ge------~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 213 --------SEFVQKYLGE------GPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDG 278 (398)
T ss_pred --------HHHHHHhcch------hHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhc
Confidence 0111110000 11112223333445678999999986430 12233322211
Q ss_pred --CCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhc
Q 039455 156 --FGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELS 213 (216)
Q Consensus 156 --~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~ 213 (216)
...+..+|+||+.++.... + ..+..+++++.+.++..++|+.+....+ .++-++.+++
T Consensus 279 ~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la 344 (398)
T PTZ00454 279 FDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFV 344 (398)
T ss_pred cCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHH
Confidence 1235677888886544322 1 2467799999999999999987664433 2222444444
No 68
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.04 E-value=3.4e-09 Score=93.00 Aligned_cols=147 Identities=24% Similarity=0.363 Sum_probs=85.1
Q ss_pred CCcccccccchhHHH---HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455 22 PSAVDGLVGIASRME---KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~---~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (216)
|..-++|+|++..+. .+.+.+.. ...+.+.|+||+|+||||||+.+++.....|. .+.+. . .....
T Consensus 24 P~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-~----~~i~d- 92 (725)
T PRK13341 24 PRTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-L----AGVKD- 92 (725)
T ss_pred CCcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-h----hhhHH-
Confidence 445667999999885 46666654 34468899999999999999999987654331 11100 0 00000
Q ss_pred HHHHHHHHHhhccccccchhhhHHHHHHHh--CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEE--eCCchh-
Q 039455 99 QEQLLSEVLMERNLIIWDVHKGINLIRWRL--CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIIT--TRDEHV- 171 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~t--sr~~~~- 171 (216)
... ........+ .++..+|+|||++.. .+.+.++..+. .+..++++ |.++..
T Consensus 93 ir~------------------~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~ 151 (725)
T PRK13341 93 LRA------------------EVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFE 151 (725)
T ss_pred HHH------------------HHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhh
Confidence 000 111111111 135679999999754 33444554332 23333432 333221
Q ss_pred -hhc-cCCcceEEecCCChHHHHHHHhhhhc
Q 039455 172 -LKG-HGVTNIYKVRGLDYVEALQLFHLKVS 200 (216)
Q Consensus 172 -~~~-~~~~~~~~l~~l~~~~~~~ll~~~~~ 200 (216)
... ......++++|++.++...++.+.+.
T Consensus 152 l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 152 VNKALVSRSRLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred hhhHhhccccceecCCCCHHHHHHHHHHHHH
Confidence 111 11246799999999999999987653
No 69
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=1.5e-08 Score=86.91 Aligned_cols=172 Identities=17% Similarity=0.084 Sum_probs=95.4
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 101 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
|..-.+++|.+...+.|..++..+ .-...+.++||.|+||||+|+.++..+...... .+-. +. ....+..
T Consensus 9 P~~f~eivGq~~i~~~L~~~i~~~-r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~~~p-Cg-------~C~~C~~ 78 (584)
T PRK14952 9 PATFAEVVGQEHVTEPLSSALDAG-RINHAYLFSGPRGCGKTSSARILARSLNCAQGP-TATP-CG-------VCESCVA 78 (584)
T ss_pred CCcHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhccccCC-CCCc-cc-------ccHHHHH
Confidence 344567999999999999998754 233567999999999999999999866421100 0000 00 0000111
Q ss_pred HHHH---------HHhhccccccchhhhHHHHH-HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455 102 LLSE---------VLMERNLIIWDVHKGINLIR-WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE 169 (216)
Q Consensus 102 l~~~---------~~~~~~~~~~~~~~~~~~l~-~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~ 169 (216)
+... +.........+...+...+. ....++.-++|||+++.. +..+.|+..+..-.....+|++|.+.
T Consensus 79 i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 79 LAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 1000 00000000000111111111 112345569999999855 45666665555434556566655443
Q ss_pred -hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC
Q 039455 170 -HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK 203 (216)
Q Consensus 170 -~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~ 203 (216)
.+...+ .....+++.+++.++..+.+.+.+-..+
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~eg 194 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEG 194 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcC
Confidence 333222 2347899999999999999987654433
No 70
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.02 E-value=2.3e-09 Score=85.08 Aligned_cols=151 Identities=16% Similarity=0.277 Sum_probs=91.8
Q ss_pred CCcccccccchhHHHH---HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455 22 PSAVDGLVGIASRMEK---MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~---l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (216)
|...+++||.+..+.+ |.+++.+ +..+.+++|||+|+||||||+.++...+.+. .+|+.... ...-..-
T Consensus 134 PktL~dyvGQ~hlv~q~gllrs~ieq--~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSA----t~a~t~d 205 (554)
T KOG2028|consen 134 PKTLDDYVGQSHLVGQDGLLRSLIEQ--NRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSA----TNAKTND 205 (554)
T ss_pred cchHHHhcchhhhcCcchHHHHHHHc--CCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEec----cccchHH
Confidence 3445678888776654 3334443 5678999999999999999999998665543 44444111 1122222
Q ss_pred HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEE--EEeCCchhhhc
Q 039455 99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRII--ITTRDEHVLKG 174 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il--~tsr~~~~~~~ 174 (216)
...++.+-.. ...+.+++.+|++|++... .+-+.+++... .|.-++ .||-++.+.-.
T Consensus 206 vR~ife~aq~----------------~~~l~krkTilFiDEiHRFNksQQD~fLP~VE---~G~I~lIGATTENPSFqln 266 (554)
T KOG2028|consen 206 VRDIFEQAQN----------------EKSLTKRKTILFIDEIHRFNKSQQDTFLPHVE---NGDITLIGATTENPSFQLN 266 (554)
T ss_pred HHHHHHHHHH----------------HHhhhcceeEEEeHHhhhhhhhhhhcccceec---cCceEEEecccCCCccchh
Confidence 2223222111 1134467889999999754 33344555443 444333 36666655222
Q ss_pred ---cCCcceEEecCCChHHHHHHHhhhh
Q 039455 175 ---HGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 175 ---~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
+..-.++.|++|+.++...+|.+..
T Consensus 267 ~aLlSRC~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 267 AALLSRCRVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred HHHHhccceeEeccCCHHHHHHHHHHHH
Confidence 2334789999999999999998743
No 71
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.01 E-value=1.1e-08 Score=90.89 Aligned_cols=166 Identities=14% Similarity=0.071 Sum_probs=96.1
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-----CceEeeccccccccccCch
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVSVTRGLV 96 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 96 (216)
|..-.+++|.+..++.|..++... .-...++++|+.|+||||+++.++..+.... ++...
T Consensus 11 P~~f~eiiGqe~v~~~L~~~i~~~-ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C-------------- 75 (824)
T PRK07764 11 PATFAEVIGQEHVTEPLSTALDSG-RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC-------------- 75 (824)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc--------------
Confidence 334567999999999999988753 2335689999999999999999998764211 11110
Q ss_pred HHHHHHHHHHHhh------ccccccchhhhHH---H-HHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEE
Q 039455 97 PLQEQLLSEVLME------RNLIIWDVHKGIN---L-IRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIII 164 (216)
Q Consensus 97 ~~~~~l~~~~~~~------~~~~~~~~~~~~~---~-l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~ 164 (216)
..+..+....... ........+.... . ......++.-++|||+++.+ +..+.|+..+..-...+.+|+
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl 155 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIF 155 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEE
Confidence 0000000000000 0000001111111 1 11123355668999999865 445566655554445666666
Q ss_pred EeCCch-hhhcc-CCcceEEecCCChHHHHHHHhhhhcCC
Q 039455 165 TTRDEH-VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKG 202 (216)
Q Consensus 165 tsr~~~-~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~ 202 (216)
+|.+.+ +...+ ...+.+++.+++.++..+++.+.+-..
T Consensus 156 ~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~E 195 (824)
T PRK07764 156 ATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQE 195 (824)
T ss_pred EeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHc
Confidence 665443 33332 235789999999999999998765333
No 72
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=4.7e-08 Score=79.29 Aligned_cols=170 Identities=17% Similarity=0.106 Sum_probs=96.6
Q ss_pred CCCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-----CceEeeccccccccccC
Q 039455 20 TFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVSVTRG 94 (216)
Q Consensus 20 ~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 94 (216)
.+|.....++|.++..+.|...+..+ .-...+.++|+.|+||||++..++..+...- +...-.. ..
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g-rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~--------~~ 87 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG-KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP--------DP 87 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC-CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC--------CC
Confidence 35667788999999999999988754 2335799999999999999999998765421 1100000 00
Q ss_pred chHHHHHHHHH-------HHh---hcc---ccccchhhhHHHHHHHh-----CCceEEEEEeCCCCH--HHHHHhhcCCC
Q 039455 95 LVPLQEQLLSE-------VLM---ERN---LIIWDVHKGINLIRWRL-----CRKRVLVVLDDVDQL--EQLQALAGNHD 154 (216)
Q Consensus 95 ~~~~~~~l~~~-------~~~---~~~---~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~ 154 (216)
-...+..+... +.. ... ......+.. ..+.+.+ .++..++|||+++.. ...+.++..+.
T Consensus 88 ~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~i-R~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LE 166 (351)
T PRK09112 88 ASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEI-RRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLE 166 (351)
T ss_pred CCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHH-HHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHh
Confidence 01111111110 000 000 000011111 1222222 245679999999754 33455554443
Q ss_pred CCCCCcEEEEEeCCc-hhhhcc-CCcceEEecCCChHHHHHHHhhhh
Q 039455 155 WFGFGSRIIITTRDE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 155 ~~~~~~~il~tsr~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
.-..+..+|++|+.+ .+...+ .....+.+.|++.++..+++....
T Consensus 167 Epp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~ 213 (351)
T PRK09112 167 EPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLG 213 (351)
T ss_pred cCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhh
Confidence 323445555555544 232222 123799999999999999998743
No 73
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.99 E-value=2.7e-08 Score=81.84 Aligned_cols=162 Identities=14% Similarity=0.068 Sum_probs=88.8
Q ss_pred cccccchhHHHHHHHHHhcCCC--------CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchH
Q 039455 26 DGLVGIASRMEKMNGYLEAGLD--------DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVP 97 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~~~--------~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (216)
++++|.+..++.|.+.+..... -...+.++||+|+|||++|+.++..+....+. +.. ++. ..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~-Cg~-------C~ 74 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPG-CGE-------CR 74 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCC-CCC-------CH
Confidence 4588999999999998875421 35679999999999999999999865432110 000 000 00
Q ss_pred HHHHHHHHHHhh-----ccccccchhhhHHHHHHH-----hCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEE
Q 039455 98 LQEQLLSEVLME-----RNLIIWDVHKGINLIRWR-----LCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIIT 165 (216)
Q Consensus 98 ~~~~l~~~~~~~-----~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~t 165 (216)
.+..+....... ........+... .+.+. ..++..+++||+++.. .....++..+..-..+..+|++
T Consensus 75 ~C~~~~~~~hpD~~~i~~~~~~i~i~~iR-~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~ 153 (394)
T PRK07940 75 ACRTVLAGTHPDVRVVAPEGLSIGVDEVR-ELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLC 153 (394)
T ss_pred HHHHHhcCCCCCEEEeccccccCCHHHHH-HHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence 000000000000 000000011111 11111 1245568999999855 3344455544432345556666
Q ss_pred eCCc-hhhhcc-CCcceEEecCCChHHHHHHHhhh
Q 039455 166 TRDE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLK 198 (216)
Q Consensus 166 sr~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~ 198 (216)
|.+. .+...+ .....+.+++++.++..+++.+.
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~ 188 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRR 188 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHh
Confidence 5554 333332 23478999999999999998754
No 74
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.99 E-value=1.3e-09 Score=83.80 Aligned_cols=68 Identities=12% Similarity=0.165 Sum_probs=44.3
Q ss_pred cchhhhHHHHHHHhCCceEEEEEeCCCCH----H--HHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 115 WDVHKGINLIRWRLCRKRVLVVLDDVDQL----E--QLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 115 ~~~~~~~~~l~~~l~~~~~llvlDd~~~~----~--~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
+..+.....+++.+.+++-+|++|+.-+. . ++-+++..+. ..++..+|+++|+...+..+ +++.+-++
T Consensus 140 SGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~-~~~~~tvv~vlHDlN~A~ry-ad~~i~lk 213 (258)
T COG1120 140 SGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN-REKGLTVVMVLHDLNLAARY-ADHLILLK 213 (258)
T ss_pred ChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHH-HhcCCEEEEEecCHHHHHHh-CCEEEEEE
Confidence 34455566789999999999999987432 1 1222222222 13468899999999988887 55444444
No 75
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.99 E-value=1.3e-08 Score=91.49 Aligned_cols=154 Identities=9% Similarity=0.063 Sum_probs=88.2
Q ss_pred cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC------CceEeeccccccccccCchH
Q 039455 24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVP 97 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 97 (216)
..++++||+.++.++...|... ....++++|++|+|||++++.++.++.+.. ...+|...+..
T Consensus 176 ~l~~vigr~~ei~~~i~iL~r~--~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~--------- 244 (857)
T PRK10865 176 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA--------- 244 (857)
T ss_pred CCCcCCCCHHHHHHHHHHHhcC--CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh---------
Confidence 4567999999999999988754 235677999999999999999999875421 11122111111
Q ss_pred HHHHHHHHHHhhccccccchhhhHH-HHHHHh-CCceEEEEEeCCCCHH---------HHHHhh-cCCCCCCCCcEEEEE
Q 039455 98 LQEQLLSEVLMERNLIIWDVHKGIN-LIRWRL-CRKRVLVVLDDVDQLE---------QLQALA-GNHDWFGFGSRIIIT 165 (216)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~~~-~l~~~l-~~~~~llvlDd~~~~~---------~~~~l~-~~~~~~~~~~~il~t 165 (216)
+... .. ..-++..... .+.... ..++.+|+||+++.+- +...++ +.+. .....+|.+
T Consensus 245 ----l~ag----~~-~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~--~g~l~~Iga 313 (857)
T PRK10865 245 ----LVAG----AK-YRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGA 313 (857)
T ss_pred ----hhhc----cc-hhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhh--cCCCeEEEc
Confidence 0000 00 0001111122 222222 2467899999996542 233333 3332 234566666
Q ss_pred eCCchhhhc-------cCCcceEEecCCChHHHHHHHhhhh
Q 039455 166 TRDEHVLKG-------HGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 166 sr~~~~~~~-------~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
|...++... ...+..+.+...+.++..++++...
T Consensus 314 Tt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 314 TTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred CCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHh
Confidence 665543211 1234567777779999999887543
No 76
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.99 E-value=4.7e-08 Score=72.70 Aligned_cols=80 Identities=15% Similarity=0.119 Sum_probs=51.0
Q ss_pred CceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCCCC
Q 039455 130 RKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGKQP 205 (216)
Q Consensus 130 ~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~~~ 205 (216)
+.+-++|+||++.. +....++..+..-.....+|++|++. .+...+ .....+++.|++.++..+++.+. +.+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~----gi~ 170 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ----GIS 170 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc----CCC
Confidence 45679999999765 33555555554434556677766654 222222 23468999999999999999887 234
Q ss_pred chhHhhhc
Q 039455 206 TDDRVELS 213 (216)
Q Consensus 206 ~~~~~~l~ 213 (216)
++.++.|+
T Consensus 171 ~~~~~~i~ 178 (188)
T TIGR00678 171 EEAAELLL 178 (188)
T ss_pred HHHHHHHH
Confidence 44555443
No 77
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.98 E-value=5.2e-09 Score=93.84 Aligned_cols=150 Identities=15% Similarity=0.120 Sum_probs=88.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-CC-----ceEeeccccccccccCchHHH
Q 039455 26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FE-----ASSFLANVREVSVTRGLVPLQ 99 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~ 99 (216)
++.+||+++++++...|.... ...++++|++|+|||++++.++.++... .+ ..+|..+...
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~----------- 245 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL----------- 245 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH-----------
Confidence 578999999999999987542 3466899999999999999999976532 11 2333221111
Q ss_pred HHHHHHHHhhccccccchhhhHHHH-HHHhCCceEEEEEeCCCCHH---------HHHHhhc-CCCCCCCCcEEEEEeCC
Q 039455 100 EQLLSEVLMERNLIIWDVHKGINLI-RWRLCRKRVLVVLDDVDQLE---------QLQALAG-NHDWFGFGSRIIITTRD 168 (216)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~l-~~~l~~~~~llvlDd~~~~~---------~~~~l~~-~~~~~~~~~~il~tsr~ 168 (216)
++. ...+ ..+++.....+ ......++.+|+||+++.+- +...++. .+. ....++|.+|..
T Consensus 246 --l~a----g~~~-~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~ 316 (821)
T CHL00095 246 --LLA----GTKY-RGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTL 316 (821)
T ss_pred --Hhc----cCCC-ccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCH
Confidence 110 0000 11122222222 22223567899999995331 2233332 222 233566666665
Q ss_pred chhhhc-------cCCcceEEecCCChHHHHHHHhh
Q 039455 169 EHVLKG-------HGVTNIYKVRGLDYVEALQLFHL 197 (216)
Q Consensus 169 ~~~~~~-------~~~~~~~~l~~l~~~~~~~ll~~ 197 (216)
.++... ...+..+.++..+.++..++++.
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 544221 12457789999999998888864
No 78
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=1.5e-08 Score=86.50 Aligned_cols=181 Identities=15% Similarity=0.121 Sum_probs=95.3
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 101 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
|..-.+++|++..++.|...+..+ .-...+.++||+|+||||+|+.++..+...-+... ..+.. ...+..
T Consensus 12 P~~F~dIIGQe~iv~~L~~aI~~~-rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~--~~Cg~-------C~sCr~ 81 (605)
T PRK05896 12 PHNFKQIIGQELIKKILVNAILNN-KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDG--DCCNS-------CSVCES 81 (605)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--CCCcc-------cHHHHH
Confidence 344567899999999999988653 22367899999999999999999987642211000 00000 001111
Q ss_pred HHHHH-------HhhccccccchhhhHHHHHH-HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-h
Q 039455 102 LLSEV-------LMERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-H 170 (216)
Q Consensus 102 l~~~~-------~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~ 170 (216)
+.... .........+.......+.. ...++.-++|+|+++.. +....++..+..-.....+|++|... .
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 10000 00000000001111111110 11234457999999764 44555554443223345555555433 2
Q ss_pred hhhc-cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhh
Q 039455 171 VLKG-HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVEL 212 (216)
Q Consensus 171 ~~~~-~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l 212 (216)
+... ......+++.+++.++....+...+...+ .+++.++.|
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~L 206 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKI 206 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3222 22346899999999999999887654333 333444443
No 79
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.97 E-value=2.5e-08 Score=85.99 Aligned_cols=172 Identities=16% Similarity=0.162 Sum_probs=96.9
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCce----EeeccccccccccCchH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS----SFLANVREVSVTRGLVP 97 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 97 (216)
|..-.+++|.+..++.|.+++..+ .-...+.++|+.|+||||+|+.++..+....+.. .+-.| ....
T Consensus 20 P~~f~dliGq~~~v~~L~~~~~~g-ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~c--------g~c~ 90 (598)
T PRK09111 20 PQTFDDLIGQEAMVRTLTNAFETG-RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLC--------GVGE 90 (598)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccC--------cccH
Confidence 345567999999999999988754 2345799999999999999999998764322110 01000 0011
Q ss_pred HHHHHHHHHHh----hccccccchhhhHHHHHHH-----hCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEe
Q 039455 98 LQEQLLSEVLM----ERNLIIWDVHKGINLIRWR-----LCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITT 166 (216)
Q Consensus 98 ~~~~l~~~~~~----~~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~ts 166 (216)
.+..+...... .........+...+ +... +.++.-++|||+++.. ...+.++..+..-...+.+|++|
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IRe-Iie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIRE-IIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHH-HHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 11111110000 00000011111111 1111 2235568999999755 44566665554334566676666
Q ss_pred CCc-hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC
Q 039455 167 RDE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK 203 (216)
Q Consensus 167 r~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~ 203 (216)
... .+...+ .....+++++++.++....+.+.+-..+
T Consensus 170 te~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg 208 (598)
T PRK09111 170 TEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG 208 (598)
T ss_pred CChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 443 222222 2337899999999999999988664433
No 80
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.97 E-value=6.2e-09 Score=86.41 Aligned_cols=157 Identities=18% Similarity=0.227 Sum_probs=93.4
Q ss_pred CcccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV 91 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
....+..|.+.++++|...+... -.....++|+||+|+|||++|+.+++.....| ..+.. ..
T Consensus 180 ~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f--i~V~~--se--- 252 (438)
T PTZ00361 180 ESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF--LRVVG--SE--- 252 (438)
T ss_pred CCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE--EEEec--ch---
Confidence 34466789999999998876421 12346789999999999999999999765432 11110 00
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----------------HHHHhhcCCCC
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----------------QLQALAGNHDW 155 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~ 155 (216)
+...+ .+. ........+.......+.+|+||+++..- .+..++..+..
T Consensus 253 ------L~~k~----~Ge------~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg 316 (438)
T PTZ00361 253 ------LIQKY----LGD------GPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDG 316 (438)
T ss_pred ------hhhhh----cch------HHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhh
Confidence 11100 000 01112222333334578899999875321 12222222211
Q ss_pred --CCCCcEEEEEeCCchhhhcc-----CCcceEEecCCChHHHHHHHhhhhcCC
Q 039455 156 --FGFGSRIIITTRDEHVLKGH-----GVTNIYKVRGLDYVEALQLFHLKVSKG 202 (216)
Q Consensus 156 --~~~~~~il~tsr~~~~~~~~-----~~~~~~~l~~l~~~~~~~ll~~~~~~~ 202 (216)
...+..||+||+..+..... ..+..+++++.+.++..++|+.+....
T Consensus 317 ~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~ 370 (438)
T PTZ00361 317 FDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKM 370 (438)
T ss_pred hcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcC
Confidence 12356788888865443321 246789999999999999999776443
No 81
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=5.8e-08 Score=77.94 Aligned_cols=153 Identities=16% Similarity=0.168 Sum_probs=94.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-----CCceEeeccccccccccCchHHHH
Q 039455 26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FEASSFLANVREVSVTRGLVPLQE 100 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 100 (216)
++.+|.+...+.|...+..+ .-...+.++||.|+|||++|+.++..+... ++....+..... ..... +-+.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~--~~i~v-~~ir 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINK--KSIGV-DDIR 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccC--CCCCH-HHHH
Confidence 45789998899999988754 344688999999999999999999865322 233322211000 00011 1111
Q ss_pred HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCC--HHHHHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-C
Q 039455 101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ--LEQLQALAGNHDWFGFGSRIIITTRDEH-VLKGH-G 176 (216)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~--~~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~~-~ 176 (216)
++...+.. ....+++-++|+|+++. .+....++..+..-..++.+|++|++++ +...+ .
T Consensus 80 ~~~~~~~~-----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 80 NIIEEVNK-----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHhc-----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 11111100 11234566888888864 4567777777765556777888876653 22222 2
Q ss_pred CcceEEecCCChHHHHHHHhhhh
Q 039455 177 VTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 177 ~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
....+++.+++.++....+.+..
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHh
Confidence 34789999999999998887653
No 82
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=4.8e-08 Score=79.64 Aligned_cols=176 Identities=15% Similarity=0.094 Sum_probs=97.8
Q ss_pred CCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeeccccccccccCchHH
Q 039455 21 FPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 21 ~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 98 (216)
.|+....++|.++..+.|.+.+..+ .-...+.++||.|+||+++|..++..+-..-+ ..........+. ...-...
T Consensus 14 ~P~~~~~iiGq~~~~~~L~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~-~~~~c~~ 91 (365)
T PRK07471 14 HPRETTALFGHAAAEAALLDAYRSG-RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA-IDPDHPV 91 (365)
T ss_pred CCCchhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc-CCCCChH
Confidence 4556678999999999999988764 23457999999999999999999986532211 100000000000 0000011
Q ss_pred HHHHHHHHHhh---------ccc----cccchhhhHHHHHHHh-----CCceEEEEEeCCCCH--HHHHHhhcCCCCCCC
Q 039455 99 QEQLLSEVLME---------RNL----IIWDVHKGINLIRWRL-----CRKRVLVVLDDVDQL--EQLQALAGNHDWFGF 158 (216)
Q Consensus 99 ~~~l~~~~~~~---------~~~----~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~ 158 (216)
+..+...-... ... ..-..+. +..+.+.+ .+++.++||||++.. .....++..+..-..
T Consensus 92 c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~ 170 (365)
T PRK07471 92 ARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPA 170 (365)
T ss_pred HHHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 11111000000 000 0001111 12222222 245679999999744 445555555443234
Q ss_pred CcEEEEEeCCchh-hhcc-CCcceEEecCCChHHHHHHHhhhh
Q 039455 159 GSRIIITTRDEHV-LKGH-GVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 159 ~~~il~tsr~~~~-~~~~-~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
+..+|++|+..+. ...+ .....+.+.|++.++..+++....
T Consensus 171 ~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 171 RSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred CeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc
Confidence 5667777776642 2222 235789999999999999998764
No 83
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.96 E-value=1.3e-08 Score=86.58 Aligned_cols=168 Identities=18% Similarity=0.205 Sum_probs=94.7
Q ss_pred cccccccchhHHHHHHHHHh---c-------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455 24 AVDGLVGIASRMEKMNGYLE---A-------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR 93 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~---~-------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (216)
.-++++|-++..+++..++. . +....+.+.++||+|+|||+|++.++....-. ++...
T Consensus 53 ~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~-----~~~i~------- 120 (495)
T TIGR01241 53 TFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP-----FFSIS------- 120 (495)
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-----eeecc-------
Confidence 44578898888777665443 1 12234579999999999999999999865322 11100
Q ss_pred CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----------------HHHHhhcCCCCC-
Q 039455 94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----------------QLQALAGNHDWF- 156 (216)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~~- 156 (216)
.. .+.....+ .........+.......+.+|+|||++... .+..++..+...
T Consensus 121 -~~----~~~~~~~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~ 189 (495)
T TIGR01241 121 -GS----DFVEMFVG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 189 (495)
T ss_pred -HH----HHHHHHhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcccc
Confidence 00 11111000 011223334444555678999999996531 122333222211
Q ss_pred -CCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455 157 -GFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK 214 (216)
Q Consensus 157 -~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~ 214 (216)
..+..+|.||+.+...+. -..+..+.+++.+.++..++|+.+..... .++.++.++++
T Consensus 190 ~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~ 254 (495)
T TIGR01241 190 TNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVAR 254 (495)
T ss_pred CCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHH
Confidence 234456667765542221 12467899999999999999988764433 23334555543
No 84
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.95 E-value=4.6e-08 Score=82.51 Aligned_cols=162 Identities=20% Similarity=0.239 Sum_probs=90.5
Q ss_pred cccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC-----ceEeecccc
Q 039455 24 AVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE-----ASSFLANVR 87 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~-----~~~~~~~~~ 87 (216)
....+.|.+..++++...+.. +-...+.++++||+|+|||++++.+++.+...+. ...|+. ..
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~ 258 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IK 258 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-cc
Confidence 345678899999998886531 1123467999999999999999999998754421 122222 11
Q ss_pred ccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHH-HhCCceEEEEEeCCCCHH---------H-----HHHhhcC
Q 039455 88 EVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQLE---------Q-----LQALAGN 152 (216)
Q Consensus 88 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~~---------~-----~~~l~~~ 152 (216)
.. .++....+.. ............. ...+++++|+|||++..- + +..++..
T Consensus 259 ~~-----------eLl~kyvGet---e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 259 GP-----------ELLNKYVGET---ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred ch-----------hhcccccchH---HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 10 0110000000 0000011111111 123468999999997431 1 2233332
Q ss_pred CCCC--CCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhc
Q 039455 153 HDWF--GFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVS 200 (216)
Q Consensus 153 ~~~~--~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~ 200 (216)
+... ..+..+|.||..++.... + ..+..+++++.+.++..++|+.+..
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~ 379 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLT 379 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhh
Confidence 2211 134455666665543221 1 2466799999999999999998763
No 85
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=1.5e-08 Score=83.05 Aligned_cols=170 Identities=16% Similarity=0.203 Sum_probs=96.0
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC--------CceEeecccccccccc
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--------EASSFLANVREVSVTR 93 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 93 (216)
|..-++++|.+...+.+.+.+..+ .-.+.+.++||+|+|||++++.++..+.... .....- ... . ..
T Consensus 13 P~~~~~iig~~~~~~~l~~~i~~~-~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~--l~~-~-~~ 87 (367)
T PRK14970 13 PQTFDDVVGQSHITNTLLNAIENN-HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE--LDA-A-SN 87 (367)
T ss_pred CCcHHhcCCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE--ecc-c-cC
Confidence 445667899999999999988754 3346899999999999999999988764321 100000 000 0 00
Q ss_pred CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-h
Q 039455 94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-H 170 (216)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~ 170 (216)
........++..+. ...+.+++-++++|+++.. ..+..++..+......+.+|+++... .
T Consensus 88 ~~~~~i~~l~~~~~-----------------~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~k 150 (367)
T PRK14970 88 NSVDDIRNLIDQVR-----------------IPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHK 150 (367)
T ss_pred CCHHHHHHHHHHHh-----------------hccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCccc
Confidence 00011111111100 0012234568999999754 33555544333223344555555432 2
Q ss_pred hhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
+...+ .....+++++++.++....+...+...+ .+++.++.|+
T Consensus 151 l~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~ 196 (367)
T PRK14970 151 IIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIA 196 (367)
T ss_pred CCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 22221 2345799999999999999987664444 3445555444
No 86
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.95 E-value=5.1e-09 Score=88.81 Aligned_cols=133 Identities=23% Similarity=0.250 Sum_probs=80.9
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecc-------cc--ccccccCchHHH--------HHHHHHHHhh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN-------VR--EVSVTRGLVPLQ--------EQLLSEVLME 109 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~--------~~l~~~~~~~ 109 (216)
..+..|+|+||+|+|||||++.+++........+.|-.. .. .......+.+.. ..-++.+...
T Consensus 346 ~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~ 425 (530)
T COG0488 346 DRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGR 425 (530)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHH
Confidence 346799999999999999999997765443222222211 00 000011111111 1111111111
Q ss_pred ccc----------cccchhhhHHHHHHHhCCceEEEEEeCC------CCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhh
Q 039455 110 RNL----------IIWDVHKGINLIRWRLCRKRVLVVLDDV------DQLEQLQALAGNHDWFGFGSRIIITTRDEHVLK 173 (216)
Q Consensus 110 ~~~----------~~~~~~~~~~~l~~~l~~~~~llvlDd~------~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~ 173 (216)
..+ ..+..+...-.+...+..++.+||||+. ++.+.+...+..|. ..+|+.||+.++++
T Consensus 426 f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~-----Gtvl~VSHDr~Fl~ 500 (530)
T COG0488 426 FGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE-----GTVLLVSHDRYFLD 500 (530)
T ss_pred cCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC-----CeEEEEeCCHHHHH
Confidence 111 1223344555688888899999999955 46677888887775 67999999999999
Q ss_pred ccCCcceEEecC
Q 039455 174 GHGVTNIYKVRG 185 (216)
Q Consensus 174 ~~~~~~~~~l~~ 185 (216)
.. +.+.+.+++
T Consensus 501 ~v-a~~i~~~~~ 511 (530)
T COG0488 501 RV-ATRIWLVED 511 (530)
T ss_pred hh-cceEEEEcC
Confidence 87 467777765
No 87
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=2.5e-08 Score=85.63 Aligned_cols=180 Identities=12% Similarity=0.089 Sum_probs=98.3
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-C-ceEeeccccccccccCchHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-E-ASSFLANVREVSVTRGLVPLQ 99 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 99 (216)
|..-.+++|.+...+.|.+.+..+ .-...+.++|+.|+||||+|+.++..+.... . ...+ +....+
T Consensus 12 P~sf~dIiGQe~v~~~L~~ai~~~-ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC-----------g~C~sC 79 (624)
T PRK14959 12 PQTFAEVAGQETVKAILSRAAQEN-RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC-----------NTCEQC 79 (624)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC-----------cccHHH
Confidence 344567899999988899888753 2347888999999999999999998664211 0 0000 000011
Q ss_pred HHHHHHHHh-------hccccccchhhhHHHHH-HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455 100 EQLLSEVLM-------ERNLIIWDVHKGINLIR-WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE 169 (216)
Q Consensus 100 ~~l~~~~~~-------~~~~~~~~~~~~~~~l~-~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~ 169 (216)
..+...... .......+...+.+.+. ....++..++|||+++.. +....|+..+..-.....+|++|.+.
T Consensus 80 ~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~ 159 (624)
T PRK14959 80 RKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEP 159 (624)
T ss_pred HHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCCh
Confidence 111000000 00000000111111111 112345679999999865 44555665554323455566666553
Q ss_pred -hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 170 -HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 170 -~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
.+...+ .....+++++++.++....|...+...+ .+++.++.|+
T Consensus 160 ~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA 207 (624)
T PRK14959 160 HKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIA 207 (624)
T ss_pred hhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 333222 2236789999999999999987654433 3344444443
No 88
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.93 E-value=2.3e-08 Score=90.12 Aligned_cols=154 Identities=10% Similarity=0.055 Sum_probs=89.1
Q ss_pred cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC------CceEeeccccccccccCchH
Q 039455 24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVTRGLVP 97 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 97 (216)
..++++||+++++++...|.... ...++++||+|+|||++++.++.++.+.. ...+|...+.
T Consensus 171 ~~~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~---------- 238 (852)
T TIGR03346 171 KLDPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG---------- 238 (852)
T ss_pred CCCcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH----------
Confidence 34679999999999999887542 35667899999999999999999875431 1122221111
Q ss_pred HHHHHHHHHHhhccccccchhhhHHH-HHHHhC-CceEEEEEeCCCCHH---------HHHHhhcCCCCCCCCcEEEEEe
Q 039455 98 LQEQLLSEVLMERNLIIWDVHKGINL-IRWRLC-RKRVLVVLDDVDQLE---------QLQALAGNHDWFGFGSRIIITT 166 (216)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~~~~-l~~~l~-~~~~llvlDd~~~~~---------~~~~l~~~~~~~~~~~~il~ts 166 (216)
.++. .... ..++...... +..... .++.+|+||+++.+- +...++..... .....+|.+|
T Consensus 239 ---~l~a----~~~~-~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g~i~~IgaT 309 (852)
T TIGR03346 239 ---ALIA----GAKY-RGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RGELHCIGAT 309 (852)
T ss_pred ---HHhh----cchh-hhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cCceEEEEeC
Confidence 1110 0000 0112222222 222222 368999999996441 23333332221 2234566666
Q ss_pred CCchhhhc-------cCCcceEEecCCChHHHHHHHhhh
Q 039455 167 RDEHVLKG-------HGVTNIYKVRGLDYVEALQLFHLK 198 (216)
Q Consensus 167 r~~~~~~~-------~~~~~~~~l~~l~~~~~~~ll~~~ 198 (216)
...++... ...+..+.++..+.++..++++..
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGL 348 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHH
Confidence 55543211 124577899999999999998754
No 89
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.93 E-value=2.1e-08 Score=80.57 Aligned_cols=149 Identities=17% Similarity=0.234 Sum_probs=85.0
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 101 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
|....+++|.+...+.+..++..+ .-...+.++|++|+|||++++.+++..... ...+. ... . . ......
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~-~~~---~-~-~~~i~~ 86 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKG-RIPNMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVN-GSD---C-R-IDFVRN 86 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEec-cCc---c-c-HHHHHH
Confidence 455678999999999999998753 334677779999999999999998876322 22222 111 0 1 111111
Q ss_pred HHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcC-CCCCCCCcEEEEEeCCchh-hhcc-C
Q 039455 102 LLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGN-HDWFGFGSRIIITTRDEHV-LKGH-G 176 (216)
Q Consensus 102 l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~-~~~~~~~~~il~tsr~~~~-~~~~-~ 176 (216)
.+...... . .+...+-++||||++.. .+....+.. +.....++.+|+||..... ...+ .
T Consensus 87 ~l~~~~~~---------------~-~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 87 RLTRFAST---------------V-SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred HHHHHHHh---------------h-cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 11110000 0 01134568999999755 222222221 2222456788888875431 1111 2
Q ss_pred CcceEEecCCChHHHHHHHh
Q 039455 177 VTNIYKVRGLDYVEALQLFH 196 (216)
Q Consensus 177 ~~~~~~l~~l~~~~~~~ll~ 196 (216)
....+.+++.+.++..+++.
T Consensus 151 R~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 151 RCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred hceEEEeCCCCHHHHHHHHH
Confidence 23578888888887776654
No 90
>CHL00176 ftsH cell division protein; Validated
Probab=98.93 E-value=1.7e-08 Score=87.54 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=97.0
Q ss_pred ccccccchhHHHHHHHHHh---cC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccC
Q 039455 25 VDGLVGIASRMEKMNGYLE---AG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG 94 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~---~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (216)
-+++.|.++..+++...+. .. ......++++||+|+|||+||+.+++.... .|+.....
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~-----p~i~is~s------ 250 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEV-----PFFSISGS------ 250 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CeeeccHH------
Confidence 4568899888887766543 11 112457999999999999999999986532 12210000
Q ss_pred chHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----------------HHHHhhcCCCC--C
Q 039455 95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----------------QLQALAGNHDW--F 156 (216)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~--~ 156 (216)
.+...... .........+.......+++|+|||++... .+..++..+.. .
T Consensus 251 ------~f~~~~~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~ 318 (638)
T CHL00176 251 ------EFVEMFVG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG 318 (638)
T ss_pred ------HHHHHhhh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC
Confidence 01100000 011223344555566789999999996541 13334333221 1
Q ss_pred CCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhc
Q 039455 157 GFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELS 213 (216)
Q Consensus 157 ~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~ 213 (216)
..+..+|.||+..+.... -..+..+.+++.+.++..++|+.++.... .++..+..++
T Consensus 319 ~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA 381 (638)
T CHL00176 319 NKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIA 381 (638)
T ss_pred CCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHH
Confidence 234566777766543321 12457899999999999999998775433 2333444444
No 91
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.92 E-value=2.3e-08 Score=82.70 Aligned_cols=174 Identities=14% Similarity=0.119 Sum_probs=93.8
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC--CCceEeeccccccccccCchHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLANVREVSVTRGLVPLQ 99 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 99 (216)
|..-.+++|.+...+.|.+++..+ .-...+.++||+|+||||+|..++..+... +....|..... .+-.-...+
T Consensus 12 P~~~~eiiGq~~~~~~L~~~~~~~-~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~---~~c~~c~~c 87 (397)
T PRK14955 12 PKKFADITAQEHITRTIQNSLRMG-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVT---EPCGECESC 87 (397)
T ss_pred CCcHhhccChHHHHHHHHHHHHhC-CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCC---CCCCCCHHH
Confidence 445667999999999999988754 234568999999999999999999876432 11111110000 000000111
Q ss_pred HHHHHHHHh----hccccccchhhhHHHHHHH-----hCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455 100 EQLLSEVLM----ERNLIIWDVHKGINLIRWR-----LCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRD 168 (216)
Q Consensus 100 ~~l~~~~~~----~~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~ 168 (216)
..+...... .........+.... +... +.+++-++|+||++.. +.+..++..+..-...+.+|+++..
T Consensus 88 ~~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~ 166 (397)
T PRK14955 88 RDFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTE 166 (397)
T ss_pred HHHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 111100000 00000001111111 1111 2345668999999755 3455665555433445566665543
Q ss_pred -chhhhcc-CCcceEEecCCChHHHHHHHhhhhc
Q 039455 169 -EHVLKGH-GVTNIYKVRGLDYVEALQLFHLKVS 200 (216)
Q Consensus 169 -~~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~ 200 (216)
..+...+ .....+++++++.++..+.+...+-
T Consensus 167 ~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~ 200 (397)
T PRK14955 167 LHKIPATIASRCQRFNFKRIPLEEIQQQLQGICE 200 (397)
T ss_pred hHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence 2333222 1236799999999999988887653
No 92
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.92 E-value=2.4e-08 Score=89.57 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=43.1
Q ss_pred ccccchhHHHHHHHHHhcC-CCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 27 GLVGIASRMEKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 27 ~~vgR~~~~~~l~~~l~~~-~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
.++||+.+++.|...+... ...+.++.|.|.+|||||+|++++...+.+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~ 51 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQ 51 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhcc
Confidence 3799999999999987743 4567899999999999999999999877655
No 93
>CHL00181 cbbX CbbX; Provisional
Probab=98.91 E-value=1e-07 Score=75.38 Aligned_cols=152 Identities=16% Similarity=0.191 Sum_probs=84.6
Q ss_pred ccccchhHHHHHHHHHh--------c--C---CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC--CceEeecccccccc
Q 039455 27 GLVGIASRMEKMNGYLE--------A--G---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSV 91 (216)
Q Consensus 27 ~~vgR~~~~~~l~~~l~--------~--~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~--~~~~~~~~~~~~~~ 91 (216)
.++|-++..+++.++.. . + ...+..++++|++|+|||++|+.++..+.... +...|+...
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~----- 98 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVT----- 98 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEec-----
Confidence 47888777776654421 0 1 12355799999999999999999998654221 111122100
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-----------HHHHHhhcCCCCCCCCc
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-----------EQLQALAGNHDWFGFGS 160 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----------~~~~~l~~~~~~~~~~~ 160 (216)
...+...+.+.. .......+... ..-+|+||+++.+ +....+...+.....+.
T Consensus 99 -------~~~l~~~~~g~~------~~~~~~~l~~a---~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~ 162 (287)
T CHL00181 99 -------RDDLVGQYIGHT------APKTKEVLKKA---MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDL 162 (287)
T ss_pred -------HHHHHHHHhccc------hHHHHHHHHHc---cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCE
Confidence 111222211110 11111222221 2249999999753 22334444333333456
Q ss_pred EEEEEeCCchh----------hhccCCcceEEecCCChHHHHHHHhhhhcC
Q 039455 161 RIIITTRDEHV----------LKGHGVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 161 ~il~tsr~~~~----------~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
.||+++....+ .+. ....+.+++++.++..+++...+-.
T Consensus 163 ~vI~ag~~~~~~~~~~~np~L~sR--~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 163 VVIFAGYKDRMDKFYESNPGLSSR--IANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred EEEEeCCcHHHHHHHhcCHHHHHh--CCceEEcCCcCHHHHHHHHHHHHHH
Confidence 67777654322 222 4678999999999999999887643
No 94
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.90 E-value=7.8e-08 Score=82.70 Aligned_cols=182 Identities=13% Similarity=0.132 Sum_probs=97.9
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 101 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
|..-.+++|.+...+.|..++..+ .-...+.++||.|+|||++|+.++..+...-+...- . + +....+..
T Consensus 12 P~~f~~viGq~~v~~~L~~~i~~~-~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~-p-C-------~~C~~C~~ 81 (559)
T PRK05563 12 PQTFEDVVGQEHITKTLKNAIKQG-KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE-P-C-------NECEICKA 81 (559)
T ss_pred CCcHHhccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC-C-C-------CccHHHHH
Confidence 445667999999999999988764 234678889999999999999999865422110000 0 0 00001111
Q ss_pred HHHHHHh----hccccccchhh---hHHHHHH-HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-h
Q 039455 102 LLSEVLM----ERNLIIWDVHK---GINLIRW-RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-H 170 (216)
Q Consensus 102 l~~~~~~----~~~~~~~~~~~---~~~~l~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~ 170 (216)
+...... .........+. ....+.. ...++.-++|||+++.+ ..+..++..+..-.....+|++|... .
T Consensus 82 i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~k 161 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHK 161 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhh
Confidence 1000000 00000001111 1111110 12345679999999865 45666665554333444555555433 2
Q ss_pred hhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
+...+ .....+++.+++.++....+...+-..+ .+++.++.|+
T Consensus 162 i~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia 207 (559)
T PRK05563 162 IPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIA 207 (559)
T ss_pred CcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 32222 2346789999999999988887654333 2334444443
No 95
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.90 E-value=8.7e-08 Score=80.95 Aligned_cols=178 Identities=14% Similarity=0.104 Sum_probs=96.7
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-----CCceEeecccccccc--ccC
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FEASSFLANVREVSV--TRG 94 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~ 94 (216)
|..-..++|.+...+.|...+..+ .-...+.++||.|+||||+|+.++..+... .++..... +..... ..+
T Consensus 12 P~~f~diiGq~~i~~~L~~~i~~~-~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~n-c~~i~~g~~~d 89 (486)
T PRK14953 12 PKFFKEVIGQEIVVRILKNAVKLQ-RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCEN-CVEIDKGSFPD 89 (486)
T ss_pred CCcHHHccChHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHH-HHHHhcCCCCc
Confidence 334567899999999999988764 234567899999999999999999876421 01110000 000000 000
Q ss_pred chHHHHHHHHHHHhhccccccchhhhHHHHHHH-----hCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeC
Q 039455 95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWR-----LCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTR 167 (216)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr 167 (216)
+..+ ........+. ...+... ..+++-++|+|+++.. +....++..+..-.....+|++|.
T Consensus 90 ~~ei-----------daas~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 90 LIEI-----------DAASNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred EEEE-----------eCccCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 0000 0000000111 1111111 2345679999999865 345555554443334455555554
Q ss_pred Cc-hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 168 DE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 168 ~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
+. .+...+ .....+++.+++.++....+.+.+-..+ .+++.+..|+
T Consensus 158 ~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La 207 (486)
T PRK14953 158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLA 207 (486)
T ss_pred CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 43 222221 2346799999999999999987654333 2334444443
No 96
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.90 E-value=5.2e-08 Score=82.11 Aligned_cols=154 Identities=16% Similarity=0.171 Sum_probs=86.4
Q ss_pred ccccccchhHHHHHHHHHh--------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCch
Q 039455 25 VDGLVGIASRMEKMNGYLE--------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLV 96 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~--------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (216)
..++-|.+...+.+..... .+-...+.+.++||+|+|||.+|+.+++.+.-.+ .. +. .+
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~--~~-l~-~~--------- 293 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPL--LR-LD-VG--------- 293 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE--EE-EE-hH---------
Confidence 3567787776666654211 1123457899999999999999999999764322 11 11 11
Q ss_pred HHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH--------------HHHHhhcCCCCCCCCcEE
Q 039455 97 PLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE--------------QLQALAGNHDWFGFGSRI 162 (216)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--------------~~~~l~~~~~~~~~~~~i 162 (216)
.+.....+ .+.......+...-...+++|+|||++..- .+..++..+.....+..+
T Consensus 294 ----~l~~~~vG------ese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~v 363 (489)
T CHL00195 294 ----KLFGGIVG------ESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFV 363 (489)
T ss_pred ----HhcccccC------hHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEE
Confidence 01000000 011112222333334578999999996431 112222222222334456
Q ss_pred EEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcC
Q 039455 163 IITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 163 l~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
|.||........ -..+..+.++..+.++..++|+.+...
T Consensus 364 IaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 364 VATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred EEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 667765542221 135678999999999999999987644
No 97
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=4.1e-08 Score=77.84 Aligned_cols=166 Identities=17% Similarity=0.251 Sum_probs=99.4
Q ss_pred cccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccC
Q 039455 26 DGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG 94 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (216)
...=|=++++++|...+..+ =..++-|.++||+|+|||-||++++++-...| +...+
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvvg------- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVG------- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEecc-------
Confidence 44557788888888876532 12367899999999999999999998754332 22111
Q ss_pred chHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH------------HH----HHHhhcCCCCC--
Q 039455 95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------------EQ----LQALAGNHDWF-- 156 (216)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------------~~----~~~l~~~~~~~-- 156 (216)
.++.+...+. ......+.+.-+-++.+++|++|++|.. .+ +-+++..+.=+
T Consensus 219 -----SElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~ 287 (406)
T COG1222 219 -----SELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP 287 (406)
T ss_pred -----HHHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC
Confidence 1233222221 1112223333333467999999998654 11 22333333211
Q ss_pred CCCcEEEEEeCCchhhhcc-----CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455 157 GFGSRIIITTRDEHVLKGH-----GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK 214 (216)
Q Consensus 157 ~~~~~il~tsr~~~~~~~~-----~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~ 214 (216)
..+.+||++|.-.+.+.-. ..+..++++.-+.+...++|+-+...=. ..+=+++.|++
T Consensus 288 ~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~ 351 (406)
T COG1222 288 RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLAR 351 (406)
T ss_pred CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHH
Confidence 2456888888766553321 3578899998888888888887765433 22235555554
No 98
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.89 E-value=6.2e-08 Score=83.92 Aligned_cols=182 Identities=13% Similarity=0.104 Sum_probs=99.4
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 101 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
|..-++++|.+...+.|..++..+ .-...++++|+.|+||||+++.++..+........+-. + +....+..
T Consensus 12 P~~~~eiiGq~~~~~~L~~~i~~~-~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~-c-------~~c~~c~~ 82 (585)
T PRK14950 12 SQTFAELVGQEHVVQTLRNAIAEG-RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRP-C-------GTCEMCRA 82 (585)
T ss_pred CCCHHHhcCCHHHHHHHHHHHHhC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC-C-------ccCHHHHH
Confidence 445667999999999998888754 23467799999999999999999987642211100000 0 01111111
Q ss_pred HHHHHHhhc---cc-cccchhhhHHHHHHH-----hCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-
Q 039455 102 LLSEVLMER---NL-IIWDVHKGINLIRWR-----LCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE- 169 (216)
Q Consensus 102 l~~~~~~~~---~~-~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~- 169 (216)
+........ +. .....+... .+... ...+.-++|||+++.+ +..+.++..+..-...+.+|+++.+.
T Consensus 83 i~~~~~~d~~~i~~~~~~~vd~ir-~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 83 IAEGSAVDVIEMDAASHTSVDDAR-EIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred HhcCCCCeEEEEeccccCCHHHHH-HHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 111000000 00 001111111 11111 1245679999999755 44666665544333455566666443
Q ss_pred hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 170 HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 170 ~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
.+...+ .....+++++++..+....+...+...+ .+++.+..|+
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La 208 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIA 208 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 222221 2346789999999999988887654433 3334444443
No 99
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.88 E-value=1.2e-07 Score=80.48 Aligned_cols=179 Identities=15% Similarity=0.149 Sum_probs=98.8
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-C----CceEeeccccccccc--cC
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-F----EASSFLANVREVSVT--RG 94 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~----~~~~~~~~~~~~~~~--~~ 94 (216)
|..-++++|.+...+.|...+..+ .-...+.++|+.|+||||+|+.++..+... . ++...-.+ ...... ..
T Consensus 10 P~~fdeiiGqe~v~~~L~~~I~~g-rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C-~~~~~~~h~d 87 (535)
T PRK08451 10 PKHFDELIGQESVSKTLSLALDNN-RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQC-QSALENRHID 87 (535)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHH-HHHhhcCCCe
Confidence 345667999999999999988754 334567999999999999999999875321 1 11000000 000000 00
Q ss_pred chHHHHHHHHHHHhhccccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455 95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRD 168 (216)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~ 168 (216)
+... ........+.....+.. ...++.-++|||+++.. +....++..+..-...+.+|++|.+
T Consensus 88 v~el-----------daas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd 156 (535)
T PRK08451 88 IIEM-----------DAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTD 156 (535)
T ss_pred EEEe-----------ccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECC
Confidence 0000 00000001111111111 11245569999999865 4455555554433455667777765
Q ss_pred ch-hhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 169 EH-VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 169 ~~-~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
.. +...+ .....+++.+++.++..+.+...+-..+ .+++.++.|+
T Consensus 157 ~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia 205 (535)
T PRK08451 157 PLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILA 205 (535)
T ss_pred hhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 42 21111 2247899999999999999987654443 2334555444
No 100
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.88 E-value=1e-07 Score=79.90 Aligned_cols=182 Identities=13% Similarity=0.153 Sum_probs=97.5
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC------CceEeeccccccccc--c
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLANVREVSVT--R 93 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~------~~~~~~~~~~~~~~~--~ 93 (216)
|..-.+++|.+..++.|..++..+ .-...+.++|++|+|||++|+.++..+...- ++..... +...... .
T Consensus 13 P~~~~diiGq~~~v~~L~~~i~~~-~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~-C~~i~~~~~~ 90 (451)
T PRK06305 13 PQTFSEILGQDAVVAVLKNALRFN-RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCAS-CKEISSGTSL 90 (451)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHH-HHHHhcCCCC
Confidence 345677999999999999988753 2346789999999999999999998764321 0100000 0000000 0
Q ss_pred CchHHHHHHHHHHHhhccccccchhhhHHHHH-HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-
Q 039455 94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIR-WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE- 169 (216)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~- 169 (216)
++..+ .+.......+.......+. ....+++-++|+|+++.. +....++..+..-.....+|++|...
T Consensus 91 d~~~i--------~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~ 162 (451)
T PRK06305 91 DVLEI--------DGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIH 162 (451)
T ss_pred ceEEe--------eccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChH
Confidence 00000 0000000000111111111 112245678999999755 34445554444323455566666433
Q ss_pred hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 170 HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 170 ~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
.+...+ .....+++++++.++....+.+.+-..+ .+.+.++.|+
T Consensus 163 kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~ 209 (451)
T PRK06305 163 KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIA 209 (451)
T ss_pred hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 222222 2346899999999999998887653333 3334444443
No 101
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.87 E-value=2.8e-08 Score=87.73 Aligned_cols=153 Identities=16% Similarity=0.117 Sum_probs=88.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-CC-----ceEeeccccccccccCchHHH
Q 039455 26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FE-----ASSFLANVREVSVTRGLVPLQ 99 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~ 99 (216)
++++||+.++.++...|.... ...++++|++|+|||++++.++..+... .+ ...|.. ++
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l---------~~---- 250 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL---------DI---- 250 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec---------cH----
Confidence 579999999999999887642 3566789999999999999999875432 11 122211 00
Q ss_pred HHHHHHHHhhccccccchhhhHHHHHHHh-CCceEEEEEeCCCCH----------HHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455 100 EQLLSEVLMERNLIIWDVHKGINLIRWRL-CRKRVLVVLDDVDQL----------EQLQALAGNHDWFGFGSRIIITTRD 168 (216)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~----------~~~~~l~~~~~~~~~~~~il~tsr~ 168 (216)
..++. ... ..-+++.....+...+ ..++.+|+|||++.+ .+...++..+.. .....+|.+|..
T Consensus 251 ~~lla----G~~-~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~ 324 (758)
T PRK11034 251 GSLLA----GTK-YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTY 324 (758)
T ss_pred HHHhc----ccc-hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCCh
Confidence 11110 000 0112222222222222 345679999999633 223223322211 223455656554
Q ss_pred chhhhc-------cCCcceEEecCCChHHHHHHHhhhh
Q 039455 169 EHVLKG-------HGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 169 ~~~~~~-------~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
.++... ...+..+.+++++.+++.++|+...
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 443111 1245789999999999999998643
No 102
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.87 E-value=7.8e-09 Score=75.10 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=72.9
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW 126 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 126 (216)
..+..++|.|++|+|||||++.+++..... ...+++... .... .... ..... ......+.+..+...-.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~-~G~v~~~g~-~~~~-~~~~----~~~~~-~i~~~~qLS~G~~qrl~lar 95 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPD-SGEILVDGK-EVSF-ASPR----DARRA-GIAMVYQLSVGERQMVEIAR 95 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCE-ECCc-CCHH----HHHhc-CeEEEEecCHHHHHHHHHHH
Confidence 346899999999999999999999876433 333443311 1100 0000 01110 00011123344455556888
Q ss_pred HhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 127 RLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 127 ~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.+..++-++++|+..+ .+.+..++..+. ..+..+|++||+.+....+ ++..+.+
T Consensus 96 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~-~d~~~~l 155 (163)
T cd03216 96 ALARNARLLILDEPTAALTPAEVERLFKVIRRLR--AQGVAVIFISHRLDEVFEI-ADRVTVL 155 (163)
T ss_pred HHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 8889999999998732 233444443332 2467899999998765544 3444444
No 103
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.87 E-value=2.2e-08 Score=72.96 Aligned_cols=126 Identities=17% Similarity=0.134 Sum_probs=72.9
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecc---ccccccccCc--hHHHHHHHHHHHhhccccccchhhhH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN---VREVSVTRGL--VPLQEQLLSEVLMERNLIIWDVHKGI 121 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~ 121 (216)
..+..++|.|++|+|||||++.+++.+... ...+++.. .........+ ....+.+.. ......+..+...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~----~~~~~LS~G~~~r 99 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIY----PWDDVLSGGEQQR 99 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhc----cCCCCCCHHHHHH
Confidence 356899999999999999999999865433 22222211 1111111111 112222211 0122334445556
Q ss_pred HHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 122 NLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 122 ~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
-.+.+.+..++-++++|+.. ....+..++..+ +..+|++||+.+... . +++.+.+.
T Consensus 100 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~-----~~tiiivsh~~~~~~-~-~d~i~~l~ 161 (166)
T cd03223 100 LAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL-----GITVISVGHRPSLWK-F-HDRVLDLD 161 (166)
T ss_pred HHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh-----CCEEEEEeCChhHHh-h-CCEEEEEc
Confidence 67888888999999999773 223343444332 367999999987653 2 56666553
No 104
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.87 E-value=9.9e-09 Score=87.08 Aligned_cols=62 Identities=19% Similarity=0.276 Sum_probs=45.9
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEecC
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRG 185 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~~ 185 (216)
......+.+++-.++-+|+||+.- +...++.++..+. + .+|++||+.++++.. |.+.+++..
T Consensus 158 ~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~----g-tviiVSHDR~FLd~V-~t~I~~ld~ 225 (530)
T COG0488 158 WRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP----G-TVIVVSHDRYFLDNV-ATHILELDR 225 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC----C-cEEEEeCCHHHHHHH-hhheEEecC
Confidence 345567888999999999999763 4455566666543 4 899999999998887 556666554
No 105
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.86 E-value=1.1e-08 Score=75.20 Aligned_cols=110 Identities=17% Similarity=0.100 Sum_probs=65.4
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW 126 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 126 (216)
..+..++|.|++|+|||||++.+++..... ...+++... ....... ....+..+...-.+..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~-~i~~~~q----------------~~~LSgGq~qrv~lar 84 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDGI-TPVYKPQ----------------YIDLSGGELQRVAIAA 84 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECCE-EEEEEcc----------------cCCCCHHHHHHHHHHH
Confidence 345799999999999999999999866543 233333210 0000000 0002333444556788
Q ss_pred HhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 127 RLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 127 ~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+..++-++++|+.-+ ...+..++..+.. ..+..+|++||+.+....+
T Consensus 85 al~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~ 138 (177)
T cd03222 85 ALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL 138 (177)
T ss_pred HHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh
Confidence 8888999999998732 1223333333221 1236799999998776544
No 106
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.86 E-value=6.1e-09 Score=78.52 Aligned_cols=69 Identities=16% Similarity=0.193 Sum_probs=47.7
Q ss_pred cccchhhhHHHHHHHhCCceEEEEEeCC----C--CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 113 IIWDVHKGINLIRWRLCRKRVLVVLDDV----D--QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 113 ~~~~~~~~~~~l~~~l~~~~~llvlDd~----~--~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
+.+..+....++.+++..+|-+|+-|+. | +.+.+-.++..+. ...+..+|+.||++.++.. ++..+.++
T Consensus 142 eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~--~dr~i~l~ 216 (226)
T COG1136 142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKY--ADRVIELK 216 (226)
T ss_pred hcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHh--CCEEEEEe
Confidence 3445566677899999999999999976 2 2244444444432 1246789999999998886 45555554
No 107
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.85 E-value=1e-07 Score=75.38 Aligned_cols=153 Identities=14% Similarity=0.153 Sum_probs=82.9
Q ss_pred ccccchhHHHHHHHHHh----------cC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeecccccccc
Q 039455 27 GLVGIASRMEKMNGYLE----------AG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSV 91 (216)
Q Consensus 27 ~~vgR~~~~~~l~~~l~----------~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~ 91 (216)
.++|-++..+++.++.. .+ ......++++|++|+|||++|+.++..+..... ...|+...
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~----- 97 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT----- 97 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec-----
Confidence 46888877777655321 01 112347999999999999999999886654211 11222100
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-----------HHHHHhhcCCCCCCCCc
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-----------EQLQALAGNHDWFGFGS 160 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----------~~~~~l~~~~~~~~~~~ 160 (216)
...+...+.+.. .......+... ..-+|+|||++.+ +....++..+.....+.
T Consensus 98 -------~~~l~~~~~g~~------~~~~~~~~~~a---~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~ 161 (284)
T TIGR02880 98 -------RDDLVGQYIGHT------APKTKEILKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDL 161 (284)
T ss_pred -------HHHHhHhhcccc------hHHHHHHHHHc---cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCE
Confidence 011222111110 11111222221 2359999999743 12333443333223455
Q ss_pred EEEEEeCCchhhhcc--------CCcceEEecCCChHHHHHHHhhhhc
Q 039455 161 RIIITTRDEHVLKGH--------GVTNIYKVRGLDYVEALQLFHLKVS 200 (216)
Q Consensus 161 ~il~tsr~~~~~~~~--------~~~~~~~l~~l~~~~~~~ll~~~~~ 200 (216)
.+|+++........+ .....+++++++.++..+++..++-
T Consensus 162 ~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~ 209 (284)
T TIGR02880 162 VVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLK 209 (284)
T ss_pred EEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHH
Confidence 666666543221111 1356799999999999999987763
No 108
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.85 E-value=1.1e-07 Score=82.87 Aligned_cols=170 Identities=16% Similarity=0.201 Sum_probs=93.1
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc----cccCchH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS----VTRGLVP 97 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 97 (216)
|..-..++|.+...+.|...+..+ .-...+.++||.|+|||++|+.++..+........+-. +..+. ...++..
T Consensus 14 P~~f~dIiGQe~~v~~L~~aI~~~-rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p-C~~C~~~~~~~~Dvie 91 (725)
T PRK07133 14 PKTFDDIVGQDHIVQTLKNIIKSN-KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP-CQECIENVNNSLDIIE 91 (725)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc-hhHHHHhhcCCCcEEE
Confidence 445667899999999999988754 23467789999999999999999986542211100100 00000 0000000
Q ss_pred HHHHHHHHHHhhccccccchhhhHHHHH-HHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCC-chhhh
Q 039455 98 LQEQLLSEVLMERNLIIWDVHKGINLIR-WRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRD-EHVLK 173 (216)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~-~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~-~~~~~ 173 (216)
. .............+.+.+. ....++.-++|||+++.. +.+..++..+..-.....+|++|.. ..+..
T Consensus 92 i--------daasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~ 163 (725)
T PRK07133 92 M--------DAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPL 163 (725)
T ss_pred E--------eccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhH
Confidence 0 0000000000111111111 112345669999999755 4556666554432334445555543 33332
Q ss_pred cc-CCcceEEecCCChHHHHHHHhhhhcC
Q 039455 174 GH-GVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 174 ~~-~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
.+ .....+++.+++.++..+.+...+-.
T Consensus 164 TI~SRcq~ieF~~L~~eeI~~~L~~il~k 192 (725)
T PRK07133 164 TILSRVQRFNFRRISEDEIVSRLEFILEK 192 (725)
T ss_pred HHHhhceeEEccCCCHHHHHHHHHHHHHH
Confidence 22 22368999999999999999875533
No 109
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.85 E-value=1.6e-08 Score=70.45 Aligned_cols=23 Identities=48% Similarity=0.540 Sum_probs=21.2
Q ss_pred EEEEecCCCcHHHHHHHHHHHhc
Q 039455 52 IGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 52 i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
|+|+||+|+|||++++.+++.+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 68999999999999999999874
No 110
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.85 E-value=1.1e-07 Score=82.24 Aligned_cols=188 Identities=14% Similarity=0.098 Sum_probs=98.9
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC--CceEeeccccccccccCchHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQ 99 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 99 (216)
|..-++++|.+...+.|.+.+..+ .-...++++||.|+||||+|+.++..+...- ....|...... .-+-...+
T Consensus 12 P~~f~eivGQe~i~~~L~~~i~~~-ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~---~Cg~C~sC 87 (620)
T PRK14954 12 PSKFADITAQEHITHTIQNSLRMD-RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTE---PCGECESC 87 (620)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCC---CCccCHHH
Confidence 344667999999999999988753 3345699999999999999999998764321 00111100000 00000111
Q ss_pred HHHHHHHHh----hccccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCC-
Q 039455 100 EQLLSEVLM----ERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRD- 168 (216)
Q Consensus 100 ~~l~~~~~~----~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~- 168 (216)
..+...-.. .........+........ .+.+++-++|+|+++.. ...+.++..+..-...+.+|++|..
T Consensus 88 ~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 88 RDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 111000000 000000011122211111 23345668999999765 3455555544432334555555543
Q ss_pred chhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 169 EHVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 169 ~~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
..+...+ .....+++.+++.++....+.+.+-..+ .+++.++.|+
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3333222 2457899999999999988887654333 3444444443
No 111
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.84 E-value=2.3e-08 Score=75.78 Aligned_cols=127 Identities=20% Similarity=0.174 Sum_probs=71.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcC------------------------CCCceEeeccccccccccCc-------
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD------------------------QFEASSFLANVREVSVTRGL------- 95 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~------- 95 (216)
..+..++|.||+|+|||||++.+++-.+. ++....|.+...+.......
T Consensus 27 ~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e 106 (248)
T COG1116 27 EKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAE 106 (248)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhHHhhheehhhccccchHh
Confidence 45689999999999999999999984332 12223333322221111111
Q ss_pred -hHHHHHHHHHH-----HhhccccccchhhhHHHHHHHhCCceEEEEEeCCCC-HH-----HHHHhh-cCCCCCCCCcEE
Q 039455 96 -VPLQEQLLSEV-----LMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ-LE-----QLQALA-GNHDWFGFGSRI 162 (216)
Q Consensus 96 -~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~-~~-----~~~~l~-~~~~~~~~~~~i 162 (216)
......++... ....+.+.+........+.+.+..++-+|++|+.-+ ++ .+.+.+ .... ..+.++
T Consensus 107 ~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~--~~~~Tv 184 (248)
T COG1116 107 ARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWE--ETRKTV 184 (248)
T ss_pred HHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHH--hhCCEE
Confidence 01112222211 111223334444556679999999999999998732 22 222222 1111 356889
Q ss_pred EEEeCCchhhhcc
Q 039455 163 IITTRDEHVLKGH 175 (216)
Q Consensus 163 l~tsr~~~~~~~~ 175 (216)
++.||+.+.+-.+
T Consensus 185 llVTHdi~EAv~L 197 (248)
T COG1116 185 LLVTHDVDEAVYL 197 (248)
T ss_pred EEEeCCHHHHHhh
Confidence 9999997654443
No 112
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.83 E-value=1.8e-08 Score=74.42 Aligned_cols=132 Identities=17% Similarity=0.197 Sum_probs=73.1
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchH------HHHHHHHHHHh-----hcccccc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVP------LQEQLLSEVLM-----ERNLIIW 115 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~-----~~~~~~~ 115 (216)
..+..++|.|++|+|||||++.+++..... ...+++... ... ...... ...+++..+.- ......+
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G~v~~~g~-~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS 99 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDGK-DLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELS 99 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECCE-ECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCC
Confidence 356899999999999999999999876543 333333211 110 000001 11112222111 1111223
Q ss_pred chhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 116 DVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 116 ~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..+...-.+.+.+...+-++++|+.- +.+.+..++..+.. ..+..+|++||+.+....+ ++..+.+
T Consensus 100 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~~~~-~d~~~~l 171 (180)
T cd03214 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLAARY-ADRVILL 171 (180)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 33444556788888999999999873 22334444433321 1257899999998776543 3444444
No 113
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.83 E-value=1.9e-07 Score=80.15 Aligned_cols=179 Identities=12% Similarity=0.102 Sum_probs=100.8
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-----CCceEeeccccccccc--cC
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-----FEASSFLANVREVSVT--RG 94 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~ 94 (216)
|..-.+++|.+...+.|..++..+ .-...+.++||.|+||||+|+.++..+... .++..--. +...... .+
T Consensus 12 P~~f~diiGqe~iv~~L~~~i~~~-~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~-C~~i~~~~~~d 89 (563)
T PRK06647 12 PRDFNSLEGQDFVVETLKHSIESN-KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSS-CKSIDNDNSLD 89 (563)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchH-HHHHHcCCCCC
Confidence 445677999999999999998754 334679999999999999999999876421 01110000 0000000 00
Q ss_pred chHHHHHHHHHHHhhccccccchhhhHHHH----HHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455 95 LVPLQEQLLSEVLMERNLIIWDVHKGINLI----RWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRD 168 (216)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l----~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~ 168 (216)
+..+ ........+...... .....++.-++|+|+++.. ..+..++..+..-.....+|++|.+
T Consensus 90 v~~i-----------dgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte 158 (563)
T PRK06647 90 VIEI-----------DGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTE 158 (563)
T ss_pred eEEe-----------cCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCC
Confidence 0000 000001111111111 1112345668999999765 4466666665543455666666654
Q ss_pred c-hhhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 169 E-HVLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 169 ~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
. .+...+ .....+++++++.++..+.+.+.+...+ .+++.+..|+
T Consensus 159 ~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa 207 (563)
T PRK06647 159 VHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIA 207 (563)
T ss_pred hHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3 222222 2346799999999999999887664333 2344444444
No 114
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=9.5e-08 Score=82.49 Aligned_cols=182 Identities=13% Similarity=0.163 Sum_probs=97.0
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-----CceEeecccccccc--ccC
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVSV--TRG 94 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~ 94 (216)
|..-.+++|.+...+.|..++..+ .-...++++||.|+||||+++.++..+...- ++...-. +..... ..+
T Consensus 12 P~~f~~iiGq~~v~~~L~~~i~~~-~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~-c~~i~~g~~~d 89 (576)
T PRK14965 12 PQTFSDLTGQEHVSRTLQNAIDTG-RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPP-CVEITEGRSVD 89 (576)
T ss_pred CCCHHHccCcHHHHHHHHHHHHcC-CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHH-HHHHhcCCCCC
Confidence 345567999999999999988754 2346679999999999999999998754211 1100000 000000 000
Q ss_pred chHHHHHHHHHHHhhccccccchhhhHHHHHH-HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-h
Q 039455 95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-H 170 (216)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~ 170 (216)
+..+ .........+...+...+.. ...++.-++|||+++.. .....++..+..-...+.+|++|.+. .
T Consensus 90 ~~ei--------d~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~k 161 (576)
T PRK14965 90 VFEI--------DGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHK 161 (576)
T ss_pred eeee--------eccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhh
Confidence 0000 00000000011111111110 11234568999999865 34555555443323455566655443 3
Q ss_pred hhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
+...+ .....+++++++.++....+...+-..+ .+++.+..|+
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la 207 (576)
T PRK14965 162 VPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVA 207 (576)
T ss_pred hhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 33332 2346789999999999888876553333 3344444443
No 115
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.83 E-value=9.3e-08 Score=85.07 Aligned_cols=167 Identities=17% Similarity=0.154 Sum_probs=95.6
Q ss_pred ccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455 25 VDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR 93 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (216)
...+.|.+...+.|...+.. +......+.++||+|+|||++|+.+++.....| +.+. .
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~f---i~v~-~------- 520 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANF---IAVR-G------- 520 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-h-------
Confidence 45577888887777775531 112345689999999999999999998765332 1111 0
Q ss_pred CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--------------HHHHHhhcCCCC--CC
Q 039455 94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--------------EQLQALAGNHDW--FG 157 (216)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--------------~~~~~l~~~~~~--~~ 157 (216)
..++....+ .+.......+...-...+.+|+||+++.+ ..+..++..+.. ..
T Consensus 521 ------~~l~~~~vG------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~ 588 (733)
T TIGR01243 521 ------PEILSKWVG------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL 588 (733)
T ss_pred ------HHHhhcccC------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC
Confidence 011111000 01112223334444567899999998643 112333333321 12
Q ss_pred CCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455 158 FGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK 214 (216)
Q Consensus 158 ~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~ 214 (216)
.+..+|.||..++.... . ..+..+.+++.+.++..++|+.+..... .++-++..|++
T Consensus 589 ~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~ 651 (733)
T TIGR01243 589 SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAE 651 (733)
T ss_pred CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence 34556677766654322 1 3567899999999999999986654333 22334555553
No 116
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.83 E-value=2.2e-08 Score=73.42 Aligned_cols=126 Identities=16% Similarity=0.144 Sum_probs=71.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccc-------------cccccCchHHHHHHHHHHHhhcccc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVRE-------------VSVTRGLVPLQEQLLSEVLMERNLI 113 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (216)
..+..++|.|++|+|||||++.+++.... ....+++....- ......+.. ...+...+ .
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~~tv~~~~------~ 95 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKP-DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYE-NLTVRENL------K 95 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECCEEcccchHhhhccEEEEecCCcccc-CCcHHHHh------h
Confidence 34689999999999999999999986543 233333321100 000000000 00000000 0
Q ss_pred ccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 114 IWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 114 ~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.+..+...-.+...+..++-++++|+... ...+..++..+. ..+..+|++||+......+ ++..+.+
T Consensus 96 LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~-~d~i~~l 168 (173)
T cd03230 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL-CDRVAIL 168 (173)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 22233444568888889999999998732 233444444432 2367899999998776654 4444444
No 117
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.82 E-value=3e-08 Score=70.52 Aligned_cols=111 Identities=21% Similarity=0.235 Sum_probs=68.8
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW 126 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 126 (216)
..+..++|.|++|+|||||++.+++..... ...+++......... .+.+..+...-.+..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~~~~i~~~-------------------~~lS~G~~~rv~lar 83 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGSTVKIGYF-------------------EQLSGGEKMRLALAK 83 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCeEEEEEE-------------------ccCCHHHHHHHHHHH
Confidence 456899999999999999999999865432 344444311000000 002233344556788
Q ss_pred HhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 127 RLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 127 ~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.+..++-++++|+.. ....+..++..+ +..+|++||+.+....+ ++..+.+
T Consensus 84 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~~-----~~til~~th~~~~~~~~-~d~v~~l 140 (144)
T cd03221 84 LLLENPNLLLLDEPTNHLDLESIEALEEALKEY-----PGTVILVSHDRYFLDQV-ATKIIEL 140 (144)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 888899999999873 223344444332 25799999998776554 4444444
No 118
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=98.82 E-value=5.5e-08 Score=71.40 Aligned_cols=58 Identities=12% Similarity=0.176 Sum_probs=40.4
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceE
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIY 181 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~ 181 (216)
...+.+.+-++|-++|||+.- ....+.++...+. ..+-.+|++||..+....+ |+.++
T Consensus 141 kV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k--~egr~viFSSH~m~Eveal-CDrvi 204 (245)
T COG4555 141 KVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLK--NEGRAVIFSSHIMQEVEAL-CDRVI 204 (245)
T ss_pred HHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhh--cCCcEEEEecccHHHHHHh-hheEE
Confidence 335788888999999999763 2344566666655 4577899999998766654 44433
No 119
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.82 E-value=3.1e-08 Score=72.67 Aligned_cols=129 Identities=17% Similarity=0.158 Sum_probs=68.8
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccc-cCchHHHHHHHHHHHhhc---c---ccccchhh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT-RGLVPLQEQLLSEVLMER---N---LIIWDVHK 119 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~---~---~~~~~~~~ 119 (216)
..+..++|.||+|+|||||++.+... ...+.|.......... ..+. ...+++..+.... . ...+..+.
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~~----~G~v~~~~~~~~~~~~~~~~~-~q~~~l~~~~L~~~~~~~~~~~LSgGq~ 93 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLYA----SGKARLISFLPKFSRNKLIFI-DQLQFLIDVGLGYLTLGQKLSTLSGGEL 93 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhc----CCcEEECCcccccccccEEEE-hHHHHHHHcCCCccccCCCcCcCCHHHH
Confidence 34679999999999999999988631 1112221110000000 0000 0122333322111 0 11122233
Q ss_pred hHHHHHHHhCCc--eEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 120 GINLIRWRLCRK--RVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 120 ~~~~l~~~l~~~--~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
..-.+...+..+ +-++++|+... .+.+..++..+. ..+..||++||+.+.... ++..+.+.
T Consensus 94 qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tvIivSH~~~~~~~--~d~i~~l~ 162 (176)
T cd03238 94 QRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI--DLGNTVILIEHNLDVLSS--ADWIIDFG 162 (176)
T ss_pred HHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHh--CCEEEEEC
Confidence 444577777788 89999998732 233333333332 246789999999887643 56666654
No 120
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1e-08 Score=76.60 Aligned_cols=62 Identities=19% Similarity=0.100 Sum_probs=44.3
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcce
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNI 180 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~ 180 (216)
.+.....+.+++.-+|-+.|||+.|+- +.+......+. ..+..++++||...++....++.+
T Consensus 148 GEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~v 215 (251)
T COG0396 148 GEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKV 215 (251)
T ss_pred chHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEE
Confidence 345566788888889999999988653 33444444444 567889999999998888754433
No 121
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.81 E-value=1e-07 Score=82.64 Aligned_cols=170 Identities=18% Similarity=0.137 Sum_probs=93.0
Q ss_pred CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCce-EeeccccccccccCchHHHHH
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS-SFLANVREVSVTRGLVPLQEQ 101 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 101 (216)
..-..++|.+...+.|..++..+ .-...+.++|+.|+||||+|+.++..+....... ..-. + .....+..
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~-rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~-C-------g~C~~C~~ 83 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISN-RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP-C-------GKCELCRA 83 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcC-CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC-C-------cccHHHHH
Confidence 44567899999999999988854 2346889999999999999999998764321100 0000 0 00111111
Q ss_pred HHHHHHhh----ccccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-h
Q 039455 102 LLSEVLME----RNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-H 170 (216)
Q Consensus 102 l~~~~~~~----~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~ 170 (216)
+....... ........+...+.+.. ...++.-++|||+++.+ +....++..+..-.....+|++|.+. .
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ 163 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQR 163 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhh
Confidence 11100000 00000111111111111 11244569999999865 44566665554323445555555543 2
Q ss_pred hhhcc-CCcceEEecCCChHHHHHHHhhhhcC
Q 039455 171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
+...+ .....+++.+++.++....+...+..
T Consensus 164 llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k 195 (620)
T PRK14948 164 VLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK 195 (620)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHH
Confidence 22222 23477899999999888888765533
No 122
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=1.5e-07 Score=79.30 Aligned_cols=167 Identities=17% Similarity=0.150 Sum_probs=99.1
Q ss_pred ccccccchhHHHHHHHHHhc----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccC
Q 039455 25 VDGLVGIASRMEKMNGYLEA----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG 94 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (216)
-..+=|.++.+++|..++.. +-.-.+-+.+|||+|+|||.||+.+++++.-. ++.. +
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vP-----f~~i--------s 255 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVP-----FLSI--------S 255 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCc-----eEee--------c
Confidence 45678999999998876531 11235789999999999999999999876422 2220 1
Q ss_pred chHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--------H-----HHHHhhcCC---CCCC-
Q 039455 95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--------E-----QLQALAGNH---DWFG- 157 (216)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--------~-----~~~~l~~~~---~~~~- 157 (216)
. ..+...+. ..+-....+.+.++....+++++|||+|.+ . -+.+++..+ ....
T Consensus 256 A----peivSGvS------GESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~ 325 (802)
T KOG0733|consen 256 A----PEIVSGVS------GESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT 325 (802)
T ss_pred c----hhhhcccC------cccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc
Confidence 1 11222111 112334455566666778999999999744 1 133444333 2211
Q ss_pred CCcEE--EE-EeCCchhhhc---c-CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455 158 FGSRI--II-TTRDEHVLKG---H-GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK 214 (216)
Q Consensus 158 ~~~~i--l~-tsr~~~~~~~---~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~ 214 (216)
.|..+ |- |+|...+-.. . ..+.-|.+.--++.+..++|+..+-+-. ..+=+++.||+
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~ 390 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAK 390 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHh
Confidence 12223 32 4444333222 2 2467899999999999999987775444 22335555554
No 123
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=6.5e-08 Score=82.83 Aligned_cols=160 Identities=19% Similarity=0.183 Sum_probs=89.6
Q ss_pred ccccccchhHHHHHHHHHh----cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHH
Q 039455 25 VDGLVGIASRMEKMNGYLE----AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQE 100 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~----~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (216)
..+.+|-++..++|.++|. ...-+++++|++||+|+|||+|++.++..+...|-...... +++..+-++-...
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGG-vrDEAEIRGHRRT-- 398 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGG-VRDEAEIRGHRRT-- 398 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCc-cccHHHhcccccc--
Confidence 3467999999999999876 22456799999999999999999999998876653332222 2221111111000
Q ss_pred HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhh------------cCCCCCC---CC
Q 039455 101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALA------------GNHDWFG---FG 159 (216)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~------------~~~~~~~---~~ 159 (216)
+-..=....++.+...-.. .-+++||++|.. +-...++ .+|.... ..
T Consensus 399 -----------YIGamPGrIiQ~mkka~~~-NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~ 466 (782)
T COG0466 399 -----------YIGAMPGKIIQGMKKAGVK-NPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSK 466 (782)
T ss_pred -----------ccccCChHHHHHHHHhCCc-CCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhh
Confidence 0000012223333333222 337788988633 1112222 2221111 12
Q ss_pred cEEEEEeCCch-h-hhccCCcceEEecCCChHHHHHHHhhhh
Q 039455 160 SRIIITTRDEH-V-LKGHGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 160 ~~il~tsr~~~-~-~~~~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
..+|.|+...+ + ...+...+++++...+.+|=.++-+++.
T Consensus 467 VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 467 VMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred eEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 33444444433 1 2223456899999999998888877765
No 124
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=4e-07 Score=74.63 Aligned_cols=186 Identities=16% Similarity=0.184 Sum_probs=110.4
Q ss_pred HHHHHhhcCCCCCCcccccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCc--eEeecc
Q 039455 10 VKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLAN 85 (216)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~--~~~~~~ 85 (216)
..+....+..+. .+..++||+.|++.+..|+... ....+.+.|.|-+|.|||.+...++......+.. .+++.+
T Consensus 136 ~~~~~~~l~~t~--~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc 213 (529)
T KOG2227|consen 136 SEQRSESLLNTA--PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINC 213 (529)
T ss_pred HHHHHHHHHhcC--CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEee
Confidence 333344444443 3556899999999999998754 5667899999999999999999888766655443 355543
Q ss_pred ccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhC-C-ceEEEEEeCCCCHHHH--HHhhcCCCCC-CCCc
Q 039455 86 VREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC-R-KRVLVVLDDVDQLEQL--QALAGNHDWF-GFGS 160 (216)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~-~-~~~llvlDd~~~~~~~--~~l~~~~~~~-~~~~ 160 (216)
.+ ......++..++..+......+... ......+..... . ..+++|+|+.|.+..- ..+...|.+- -+++
T Consensus 214 ~s----l~~~~aiF~kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~s 288 (529)
T KOG2227|consen 214 TS----LTEASAIFKKIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNS 288 (529)
T ss_pred cc----ccchHHHHHHHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcc
Confidence 32 2344455666666654333333333 222333333333 3 4799999999865321 1111111110 1334
Q ss_pred EEEEEeCCc------hhhhccC-----CcceEEecCCChHHHHHHHhhhhcCC
Q 039455 161 RIIITTRDE------HVLKGHG-----VTNIYKVRGLDYVEALQLFHLKVSKG 202 (216)
Q Consensus 161 ~il~tsr~~------~~~~~~~-----~~~~~~l~~l~~~~~~~ll~~~~~~~ 202 (216)
++++..-.. .++..++ ....+.++|.+.++..++|....-..
T Consensus 289 r~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 289 RIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred eeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 444333221 1122221 35789999999999999999876443
No 125
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.78 E-value=4.9e-08 Score=73.63 Aligned_cols=138 Identities=18% Similarity=0.170 Sum_probs=73.4
Q ss_pred HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec---------------------c-ccccccccC
Q 039455 37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA---------------------N-VREVSVTRG 94 (216)
Q Consensus 37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~---------------------~-~~~~~~~~~ 94 (216)
.+.+.+...-..+.+++|+|++|+|||||++.+++..+.....+.|-. + .+++.+...
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 333333333456789999999999999999999985433221111110 0 011111111
Q ss_pred chHHH----------------HHHHHHHH------hhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-H-----HH
Q 039455 95 LVPLQ----------------EQLLSEVL------MERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-E-----QL 146 (216)
Q Consensus 95 ~~~~~----------------~~l~~~~~------~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-~-----~~ 146 (216)
...++ .+++..+. ...+.+.+..+...-.+.+++.-++-+||+|+.-+. + ++
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 11111 11222111 111222334445556788999999999999988432 1 12
Q ss_pred HHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 147 QALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 147 ~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
-+++..+. ...+..+|+.||+..++..+
T Consensus 181 lnlL~~l~-~~~~lt~l~IsHdl~~v~~~ 208 (252)
T COG1124 181 LNLLLELK-KERGLTYLFISHDLALVEHM 208 (252)
T ss_pred HHHHHHHH-HhcCceEEEEeCcHHHHHHH
Confidence 22221111 03467899999998765554
No 126
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.77 E-value=3.8e-08 Score=72.23 Aligned_cols=130 Identities=16% Similarity=0.198 Sum_probs=71.5
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhcc-cc-------ccchh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERN-LI-------IWDVH 118 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~-------~~~~~ 118 (216)
..+..++|.|++|+|||||++.+++..... ...+++... ... ..........+. .+..... .. .+..+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~-~~~-~~~~~~~~~~i~-~~~q~~~~~~~tv~~~lLS~G~ 101 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRPT-SGRVRLDGA-DIS-QWDPNELGDHVG-YLPQDDELFSGSIAENILSGGQ 101 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCCC-CCeEEECCE-Ecc-cCCHHHHHhheE-EECCCCccccCcHHHHCcCHHH
Confidence 345799999999999999999999865433 232332210 000 000000000000 0000000 00 22233
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
...-.+...+..++-++++|+.. ....+..++..+. ..+..+|++||+.+... . +++.+.+.
T Consensus 102 ~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~-~d~v~~l~ 169 (173)
T cd03246 102 RQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S-ADRILVLE 169 (173)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h-CCEEEEEE
Confidence 44556788888899999999873 2233444444433 24678999999987764 3 56665553
No 127
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.77 E-value=4e-07 Score=79.06 Aligned_cols=173 Identities=18% Similarity=0.181 Sum_probs=93.9
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 101 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
|..-++++|.++..+.|..++..+ .-...+.++|+.|+||||+|+.++..+....+....-. ++.+ ..+..
T Consensus 13 P~~f~~viGq~~~~~~L~~~i~~~-~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~-Cg~C-------~sC~~ 83 (614)
T PRK14971 13 PSTFESVVGQEALTTTLKNAIATN-KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEA-CNEC-------ESCVA 83 (614)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcC-CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC-CCcc-------hHHHH
Confidence 345667999999999999988754 23466899999999999999999987642111000000 0000 00000
Q ss_pred HHHH----HHhhccccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCC-ch
Q 039455 102 LLSE----VLMERNLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRD-EH 170 (216)
Q Consensus 102 l~~~----~~~~~~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~-~~ 170 (216)
+-.. +...........+.....+.. .+.++.-++|||+++.. +....++..+..-...+.+|++|.. ..
T Consensus 84 ~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~k 163 (614)
T PRK14971 84 FNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHK 163 (614)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchh
Confidence 0000 000000000001111111111 12235568999999755 3455555544432345555555543 33
Q ss_pred hhhcc-CCcceEEecCCChHHHHHHHhhhhcCCC
Q 039455 171 VLKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK 203 (216)
Q Consensus 171 ~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~ 203 (216)
+...+ .....+++++++.++....+.+.+-..+
T Consensus 164 Il~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~eg 197 (614)
T PRK14971 164 ILPTILSRCQIFDFNRIQVADIVNHLQYVASKEG 197 (614)
T ss_pred chHHHHhhhheeecCCCCHHHHHHHHHHHHHHcC
Confidence 33332 2347799999999999999987654433
No 128
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.77 E-value=5.7e-08 Score=71.13 Aligned_cols=128 Identities=18% Similarity=0.238 Sum_probs=71.5
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHH---------HHHHHHHhhccccccch
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQE---------QLLSEVLMERNLIIWDV 117 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~~~~~~~~~~~~~ 117 (216)
..+..++|.|++|+|||||++.+++..... ...+++... .... ........ .++. .....+. .+..
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~-~~~~-~~~~~~~~~i~~~~~~~~~~~-~t~~e~l-LS~G 100 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGV-DLRD-LDLESLRKNIAYVPQDPFLFS-GTIRENI-LSGG 100 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCE-Ehhh-cCHHHHHhhEEEEcCCchhcc-chHHHHh-hCHH
Confidence 456899999999999999999999876533 333333211 0000 00000000 0000 0000000 2223
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
+...-.+...+..++-++++|+.. ..+.+..++..+. .+..+|++||+.+.... ++..+.+.
T Consensus 101 ~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l~ 168 (171)
T cd03228 101 QRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD--ADRIIVLD 168 (171)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh--CCEEEEEc
Confidence 334445788888899999999873 2244445554443 24789999999887654 55655553
No 129
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.77 E-value=2e-07 Score=82.97 Aligned_cols=154 Identities=18% Similarity=0.213 Sum_probs=86.6
Q ss_pred cccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccc
Q 039455 24 AVDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT 92 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (216)
..+.+.|.+..++.+.+++... -..+..++|+||+|+|||+|++.+++.....+ +.+. ...
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~---- 247 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPE---- 247 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHH----
Confidence 3456889999999998876421 12346799999999999999999998764322 1111 100
Q ss_pred cCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH-------------HHHHhhcCCCCC-CC
Q 039455 93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE-------------QLQALAGNHDWF-GF 158 (216)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~~~-~~ 158 (216)
+.... ...........+.......+.+|+|||++... ....++..+... ..
T Consensus 248 ---------i~~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 248 ---------IMSKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred ---------Hhccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC
Confidence 00000 00011122223333445567899999986431 122233222111 22
Q ss_pred CcEEEE-EeCCchhhh-cc----CCcceEEecCCChHHHHHHHhhhhc
Q 039455 159 GSRIII-TTRDEHVLK-GH----GVTNIYKVRGLDYVEALQLFHLKVS 200 (216)
Q Consensus 159 ~~~il~-tsr~~~~~~-~~----~~~~~~~l~~l~~~~~~~ll~~~~~ 200 (216)
+..+++ +|+.+.... .+ .....+.+...+.++..++++.+..
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~ 360 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR 360 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc
Confidence 333343 555443211 11 2356788999999999999986553
No 130
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.76 E-value=2.4e-08 Score=73.62 Aligned_cols=133 Identities=14% Similarity=0.220 Sum_probs=70.8
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc-CchHHHHHH---------HHHHHhhcccc--c
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR-GLVPLQEQL---------LSEVLMERNLI--I 114 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l---------~~~~~~~~~~~--~ 114 (216)
..+..++|.|++|+|||||++.+++.+.. ....+.+... ...... ........+ ........... .
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~-~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~l 101 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILIDGE-DLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALGL 101 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCE-EccccchhHHHHhhcEEEEecCCccCCCCCHHHheeecC
Confidence 35689999999999999999999986543 2333332210 000000 000000000 00000000000 2
Q ss_pred cchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 115 WDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 115 ~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+..+...-.+...+..++-++++|+.- +...+..++..+.. ..+..+|++||+.+....+ +++.+.+
T Consensus 102 S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~~-~d~i~~l 174 (178)
T cd03229 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQA-QLGITVVLVTHDLDEAARL-ADRVVVL 174 (178)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence 223344556788888899999999773 22334444433321 1257899999998776654 4555554
No 131
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.76 E-value=8.4e-08 Score=80.59 Aligned_cols=164 Identities=19% Similarity=0.245 Sum_probs=100.3
Q ss_pred ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-----CceEeeccccccccccCchHHH
Q 039455 25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----EASSFLANVREVSVTRGLVPLQ 99 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 99 (216)
-.+++|-+...+.|...+..+ .-.....++|+.|+||||+|+.++..+.-.- |+..-.. +...........+.
T Consensus 15 F~evvGQe~v~~~L~nal~~~-ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~-Ck~I~~g~~~DviE 92 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENG-RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS-CKEINEGSLIDVIE 92 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhC-cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh-hHhhhcCCcccchh
Confidence 345799999999999988764 3346788999999999999999998653221 1111000 00000000000000
Q ss_pred HHHHHHHHhhccccccchhhhHHHHHHHh--------CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455 100 EQLLSEVLMERNLIIWDVHKGINLIRWRL--------CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE 169 (216)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l--------~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~ 169 (216)
-+-++ . ..++.++++. .++--+.|||+++++ ..+..++.-+..-.....+|++|.++
T Consensus 93 iDaAS---------n----~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~ 159 (515)
T COG2812 93 IDAAS---------N----TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEP 159 (515)
T ss_pred hhhhh---------c----cChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCc
Confidence 00000 0 0122222222 235569999999866 67888888776545667777777765
Q ss_pred h-hhhc-cCCcceEEecCCChHHHHHHHhhhhcCCC
Q 039455 170 H-VLKG-HGVTNIYKVRGLDYVEALQLFHLKVSKGK 203 (216)
Q Consensus 170 ~-~~~~-~~~~~~~~l~~l~~~~~~~ll~~~~~~~~ 203 (216)
. +... +...+.|.++.++.++....|...+-..+
T Consensus 160 ~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~ 195 (515)
T COG2812 160 QKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEG 195 (515)
T ss_pred CcCchhhhhccccccccCCCHHHHHHHHHHHHHhcC
Confidence 3 2222 22348899999999999999988876665
No 132
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.76 E-value=7.3e-08 Score=71.30 Aligned_cols=127 Identities=19% Similarity=0.294 Sum_probs=71.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccc--cc-------------ccccc---Cc---hHHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANV--RE-------------VSVTR---GL---VPLQEQLLSE 105 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~--~~-------------~~~~~---~~---~~~~~~l~~~ 105 (216)
..+..++|.|++|+|||||++.+++..... ...+++... .. ..... .+ ....+.+...
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~ 102 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRPPA-SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALS 102 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHH
Confidence 346799999999999999999999865432 222222110 00 00000 00 0111111100
Q ss_pred HHhhccccccchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcc
Q 039455 106 VLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTN 179 (216)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~ 179 (216)
. ..+..+...-.+...+..++-++++|+.- ..+.+..++..+. ..+..+|++||+......+ +++
T Consensus 103 ~------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~-~d~ 173 (182)
T cd03215 103 S------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELA--DAGKAVLLISSELDELLGL-CDR 173 (182)
T ss_pred h------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCE
Confidence 0 02333344456888888899999999773 2234444444332 2367899999998766554 344
Q ss_pred eEEe
Q 039455 180 IYKV 183 (216)
Q Consensus 180 ~~~l 183 (216)
.+.+
T Consensus 174 v~~l 177 (182)
T cd03215 174 ILVM 177 (182)
T ss_pred EEEe
Confidence 4444
No 133
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.75 E-value=1.4e-07 Score=81.68 Aligned_cols=53 Identities=28% Similarity=0.395 Sum_probs=43.8
Q ss_pred CCcccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
|....+++|.++.++.+..++... .....+++|+||+|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 455678999999999999998743 23346799999999999999999998653
No 134
>PRK08181 transposase; Validated
Probab=98.75 E-value=6.8e-08 Score=75.45 Aligned_cols=35 Identities=23% Similarity=0.117 Sum_probs=28.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
..++++|++|+|||+|+..+++.+......+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 56999999999999999999987765544455553
No 135
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=98.74 E-value=2.4e-07 Score=82.88 Aligned_cols=158 Identities=18% Similarity=0.199 Sum_probs=84.6
Q ss_pred ccccchhHHHHHHHHHhc----CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH
Q 039455 27 GLVGIASRMEKMNGYLEA----GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL 102 (216)
Q Consensus 27 ~~vgR~~~~~~l~~~l~~----~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (216)
..+|.+...+++..++.. +...++.++++||+|+|||++|+.++..+...|..... .. .... ..+
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~----~~---~~~~----~~i 389 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSL----GG---VRDE----AEI 389 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeC----CC---cccH----HHH
Confidence 578888888888886642 23345689999999999999999999987543321111 10 0010 111
Q ss_pred HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHH------HHHhhcC--------CCCCC-------CCcE
Q 039455 103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ------LQALAGN--------HDWFG-------FGSR 161 (216)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~------~~~l~~~--------~~~~~-------~~~~ 161 (216)
.. ....+...........+.......+ +++||+++.... ...++.. |.+.. .+..
T Consensus 390 ~g---~~~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 390 RG---HRRTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred cC---CCCceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 00 0000011112223333443333334 788999965411 1222211 11111 2344
Q ss_pred EEEEeCCchhhh--ccCCcceEEecCCChHHHHHHHhhhh
Q 039455 162 IIITTRDEHVLK--GHGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 162 il~tsr~~~~~~--~~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
+|.||....... ..+....+++++++.++..+++.++.
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHH
Confidence 455665432211 12334789999999999888887654
No 136
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.74 E-value=1e-07 Score=70.18 Aligned_cols=126 Identities=20% Similarity=0.149 Sum_probs=71.7
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccc-------------cccccCchHHHHHHHHHHHhhcccc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVRE-------------VSVTRGLVPLQEQLLSEVLMERNLI 113 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (216)
..+..++|.|++|+|||||++.+++..... ...+++....- ......+.. ..+...+ ...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~--~tv~~~i----~~~ 98 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKPQ-QGEITLDGVPVSDLEKALSSLISVLNQRPYLFD--TTLRNNL----GRR 98 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCC-CCEEEECCEEHHHHHHHHHhhEEEEccCCeeec--ccHHHhh----ccc
Confidence 356899999999999999999999865433 23333321100 000000000 0011000 112
Q ss_pred ccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 114 IWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 114 ~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
.+..+...-.+...+..++-++++|+... .+.+..++..+. .+..+|++||+.+.... ++..+.+.
T Consensus 99 LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~~~~l~ 170 (178)
T cd03247 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL---KDKTLIWITHHLTGIEH--MDKILFLE 170 (178)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHHHh--CCEEEEEE
Confidence 22234444567888889999999998742 233444444432 36789999999887753 45555553
No 137
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=6e-07 Score=71.88 Aligned_cols=167 Identities=15% Similarity=0.130 Sum_probs=94.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC---------------CCCceEeeccccccc
Q 039455 26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD---------------QFEASSFLANVREVS 90 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~---------------~~~~~~~~~~~~~~~ 90 (216)
.+++|.+...+.|.+.+..+ .-...+.++||.|+||+++|..++..+-. ..|...|+.-....
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~-rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQN-RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhC-CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 35799999999999988764 33579999999999999999999986532 23444554311000
Q ss_pred cccCchHHHHHHHHHHHhhcc-ccccchhhhHHHHHHHh-----CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEE
Q 039455 91 VTRGLVPLQEQLLSEVLMERN-LIIWDVHKGINLIRWRL-----CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRI 162 (216)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~i 162 (216)
.-.......+........ ...-..+. +..+.+.+ .++.-++|||+++.. .....++..+..-. .+.+
T Consensus 82 ---~g~~~~~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 82 ---QGKLITASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ---cccccchhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 000000000000000000 00001111 12222222 345679999999755 34555555443323 4455
Q ss_pred EEEeCCc-hhhhcc-CCcceEEecCCChHHHHHHHhhhh
Q 039455 163 IITTRDE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 163 l~tsr~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
|++|.++ .+...+ .....+++.+++.++..+.+.+..
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhh
Confidence 5555544 333333 234889999999999999999875
No 138
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.73 E-value=7.1e-07 Score=71.96 Aligned_cols=46 Identities=24% Similarity=0.358 Sum_probs=37.7
Q ss_pred chhHHHHHHHHHhcC-CCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 31 IASRMEKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 31 R~~~~~~l~~~l~~~-~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
|+...+.|.+.+... ...+.+|+|.|+-|+|||++++.+.+.+...
T Consensus 1 ~~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 1 RKPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred ChHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 455667777777754 2677899999999999999999999988766
No 139
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.73 E-value=3.2e-07 Score=69.77 Aligned_cols=56 Identities=30% Similarity=0.367 Sum_probs=44.1
Q ss_pred CCCcccccccchhHHHHHHHHHhc--CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 21 FPSAVDGLVGIASRMEKMNGYLEA--GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 21 ~~~~~~~~vgR~~~~~~l~~~l~~--~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
.+...+.++|-+.+.+.|.+.... .+.....+.++|+.|+|||++++.+.+.+...
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 345567899999999998775431 12345788999999999999999999987654
No 140
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.72 E-value=6.4e-08 Score=75.00 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=67.4
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec-c----ccccc--cccCchHHH--------------HHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA-N----VREVS--VTRGLVPLQ--------------EQLLSEV 106 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~-~----~~~~~--~~~~~~~~~--------------~~l~~~~ 106 (216)
.+.+++|.|++|+|||||++.+++........+.|-. . .+... ......+.+ .+++..+
T Consensus 24 ~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~l 103 (246)
T cd03237 24 ESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKTEIAKPL 103 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHHHHHHHc
Confidence 4689999999999999999999986543322111110 0 01000 001111111 1111111
Q ss_pred Hhh-----ccccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 107 LME-----RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 107 ~~~-----~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
... .....+..+...-.+...+..++-++++|+.-. ...+..++..+.. ..+..||++||+.+.+..+
T Consensus 104 ~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiiivsHd~~~~~~~ 182 (246)
T cd03237 104 QIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAE-NNEKTAFVVEHDIIMIDYL 182 (246)
T ss_pred CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 000 001112233334467888888999999998732 2333343333321 2367899999998776654
No 141
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.71 E-value=4.7e-08 Score=70.54 Aligned_cols=125 Identities=18% Similarity=0.224 Sum_probs=72.6
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWR 127 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (216)
.+..++|.|++|+|||||++.+++.+.. ....+++... ... ... .......+ ....+.+..+.....+...
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~-~~~---~~~--~~~~~~~i--~~~~qlS~G~~~r~~l~~~ 94 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGK-DIA---KLP--LEELRRRI--GYVPQLSGGQRQRVALARA 94 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCE-Ecc---cCC--HHHHHhce--EEEeeCCHHHHHHHHHHHH
Confidence 4579999999999999999999987653 3343444311 100 000 00110000 0001123334445567778
Q ss_pred hCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 128 LCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 128 l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
+...+-++++|+... ...+..++..+. ..+..++++||+.+....+ +++.+.+.
T Consensus 95 l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~-~d~i~~l~ 154 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA-ADRVIVLK 154 (157)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEEe
Confidence 888899999998742 233444443332 2357899999998887765 45555553
No 142
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.71 E-value=1.5e-07 Score=70.31 Aligned_cols=130 Identities=17% Similarity=0.152 Sum_probs=71.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHh--cCCCCceEeecc-----------ccccccccCc---hHHHHHHHHHHHhhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTL--KDQFEASSFLAN-----------VREVSVTRGL---VPLQEQLLSEVLMER 110 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~--~~~~~~~~~~~~-----------~~~~~~~~~~---~~~~~~l~~~~~~~~ 110 (216)
..+..++|.|++|+|||||++.+++.. ... ...+++.. .........+ ....+.+.... ..
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~-~~- 109 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRRTGLGV-SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAA-KL- 109 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHH-Hh-
Confidence 456899999999999999999999866 422 22222210 0000001110 11222221100 00
Q ss_pred cccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCch-hhhccCCcceEEe
Q 039455 111 NLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEH-VLKGHGVTNIYKV 183 (216)
Q Consensus 111 ~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~~~~~~~~~l 183 (216)
...+..+...-.+...+..++-++++|+..+ .+.+..++..+. ..+..+|++||+.+ ....+ +++.+.+
T Consensus 110 -~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~~-~d~v~~l 185 (194)
T cd03213 110 -RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA--DTGRTIICSIHQPSSEIFEL-FDKLLLL 185 (194)
T ss_pred -ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCchHHHHHh-cCEEEEE
Confidence 0233344445568888888999999998732 233444443332 24678999999875 34333 3444444
No 143
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.71 E-value=6.6e-08 Score=74.28 Aligned_cols=127 Identities=17% Similarity=0.156 Sum_probs=76.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecc-ccccccccCchHHHHHHHHHHH------hhccccccchhh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN-VREVSVTRGLVPLQEQLLSEVL------MERNLIIWDVHK 119 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~~~~ 119 (216)
..+..++|+|++|+||||+++.+..-.......+.|-.. ..... .........+++.... ...+.+.+..+.
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQr 115 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQR 115 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhh
Confidence 456899999999999999999999876654333333211 11110 0111222333333322 122233445555
Q ss_pred hHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
..-.+++++.-++-++|.|+.-+. .++-.++..+.. ..+...+++||+..+...+
T Consensus 116 QRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 116 QRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred hhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence 566789999999999999988543 222233322210 2467899999998776655
No 144
>PRK08116 hypothetical protein; Validated
Probab=98.70 E-value=1.8e-07 Score=73.32 Aligned_cols=35 Identities=29% Similarity=0.237 Sum_probs=27.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 83 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~ 83 (216)
...+.|+|++|+|||+||..+++.+..+...+.++
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~ 148 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFV 148 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 35699999999999999999999876554444444
No 145
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=98.70 E-value=1.2e-07 Score=72.11 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=40.6
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...-.+...+..++-++++|+.-+ ...+..++..+. ..+..||++||+.+....+ ++..+.+
T Consensus 144 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~vsH~~~~~~~~-~d~i~~l 211 (216)
T TIGR00960 144 QQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFN--RRGTTVLVATHDINLVETY-RHRTLTL 211 (216)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 334457888888999999998732 233444444332 2467899999998876654 4555554
No 146
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.69 E-value=2.7e-07 Score=68.58 Aligned_cols=62 Identities=11% Similarity=0.086 Sum_probs=44.2
Q ss_pred ccccchhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 112 LIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 112 ~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...+..+....++.+.+..+|-++.||+.-+. .++-+++..+. ..|-+.++.||+..++...
T Consensus 135 ~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA--~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 135 AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLA--EEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHH--HcCCeEEEEechhHHHHHh
Confidence 33455666777899999999999999988542 23333333333 4678899999998887765
No 147
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.69 E-value=1.8e-07 Score=65.42 Aligned_cols=36 Identities=33% Similarity=0.330 Sum_probs=28.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
...+.|+|++|+||||+++.++..+......+.++.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 368999999999999999999998765543455554
No 148
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=2.6e-07 Score=79.23 Aligned_cols=53 Identities=23% Similarity=0.429 Sum_probs=45.9
Q ss_pred ccccccchhHHHHHHHHHh----cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC
Q 039455 25 VDGLVGIASRMEKMNGYLE----AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF 77 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~----~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~ 77 (216)
....+|.++..+++..++. .++.++++++++||+|+|||++++.++..+...|
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCce
Confidence 4578999999999999876 3356789999999999999999999999887665
No 149
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.69 E-value=1.1e-07 Score=71.87 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=42.0
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEecCCCh
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRGLDY 188 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~~l~~ 188 (216)
.-.+...+..++-++++|+.. ....+..++..+. ..+..||++||+.+.... +..+.++++..
T Consensus 135 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~---~~~~~~~~~~~ 203 (207)
T PRK13539 135 RVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHL--AQGGIVIAATHIPLGLPG---ARELDLGPFAA 203 (207)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCchhhcc---CcEEeecCccC
Confidence 345677778889999999773 2234444444332 246789999999876665 56777776443
No 150
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.68 E-value=1.3e-07 Score=71.75 Aligned_cols=62 Identities=15% Similarity=0.074 Sum_probs=40.1
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.....+...+..++-++++|+.- +.+.+..++..+. ..+..+|++||+......+ ++..+.+
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~~-~~~i~~l 210 (214)
T PRK13543 143 KKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHL--RGGGAALVTTHGAYAAPPV-RTRMLTL 210 (214)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEecChhhhhhh-cceEEEE
Confidence 34445777788888999999873 2233444443332 3467899999998877665 4444444
No 151
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.68 E-value=2.2e-07 Score=69.34 Aligned_cols=132 Identities=16% Similarity=0.157 Sum_probs=70.9
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc-CCCCceEeecc----------cccccccc---CchHHHHHHHHHHHhhccc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLAN----------VREVSVTR---GLVPLQEQLLSEVLMERNL 112 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~~---~~~~~~~~l~~~~~~~~~~ 112 (216)
..+..++|+|++|+|||||++.+++... ......+++.. ........ ......+.+...... .
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~---~ 107 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL---R 107 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHH---h
Confidence 3468999999999999999999997532 11122222210 00000000 001112222111000 0
Q ss_pred cccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchh-hhccCCcceEEec
Q 039455 113 IIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHV-LKGHGVTNIYKVR 184 (216)
Q Consensus 113 ~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~-~~~~~~~~~~~l~ 184 (216)
..+..+...-.+...+..++-++++|+... ...+..++..+. ..+..+|++||+.+. .... +++.+.+.
T Consensus 108 ~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiiivtH~~~~~~~~~-~d~i~~l~ 183 (192)
T cd03232 108 GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLA--DSGQAILCTIHQPSASIFEK-FDRLLLLK 183 (192)
T ss_pred cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHH--HcCCEEEEEEcCChHHHHhh-CCEEEEEc
Confidence 233344455567888888999999998732 233444443332 246789999999763 3333 45555543
No 152
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.68 E-value=1.2e-07 Score=69.03 Aligned_cols=60 Identities=12% Similarity=0.183 Sum_probs=42.6
Q ss_pred ccchhhhHHHHHHHhCCceEEEEEeCC----CCH--HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 114 IWDVHKGINLIRWRLCRKRVLVVLDDV----DQL--EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 114 ~~~~~~~~~~l~~~l~~~~~llvlDd~----~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+..++....+++++-++|-+|+=|+. |-. ..+-.++..++ ..|.+||++||+.++.+.+
T Consensus 138 LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~ 203 (223)
T COG2884 138 LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRM 203 (223)
T ss_pred cCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhc
Confidence 344555666789999999999999966 222 22333344444 4689999999999988876
No 153
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=98.67 E-value=1.4e-07 Score=75.30 Aligned_cols=52 Identities=15% Similarity=0.046 Sum_probs=35.4
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG 174 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~ 174 (216)
.-.+...+..++-+|++|+.- ....+..++..+. ..+..||++||+.+....
T Consensus 132 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~~g~tvi~~sH~~~~~~~ 189 (302)
T TIGR01188 132 RLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALK--EEGVTILLTTHYMEEADK 189 (302)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--hCCCEEEEECCCHHHHHH
Confidence 345777888899999999873 2234444444443 346789999999866544
No 154
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.67 E-value=1.9e-07 Score=71.91 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455 35 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 83 (216)
Q Consensus 35 ~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~ 83 (216)
+..+.++...-......++++|++|+|||+|+..++..+......+.++
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i 133 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII 133 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3444555443222335899999999999999999999876654555555
No 155
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.66 E-value=1.7e-07 Score=70.94 Aligned_cols=60 Identities=13% Similarity=0.177 Sum_probs=38.0
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+..+ ...+..++..+. ..+..||++||+.+....+ ++..+.+
T Consensus 136 rl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~--~~~~tii~~sH~~~~~~~~-~d~i~~l 201 (210)
T cd03269 136 KVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELA--RAGKTVILSTHQMELVEEL-CDRVLLL 201 (210)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh-hhEEEEE
Confidence 3357777788889999998732 233333443332 2467899999998776554 3444444
No 156
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.66 E-value=1.2e-07 Score=72.38 Aligned_cols=61 Identities=15% Similarity=0.204 Sum_probs=38.8
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.- ....+..++..+. ..+..||++||+.+....+ +++.+.+
T Consensus 139 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~~-~d~i~~l 205 (222)
T cd03224 139 QMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELR--DEGVTILLVEQNARFALEI-ADRAYVL 205 (222)
T ss_pred HHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-ccEEEEe
Confidence 3445677777888999999773 2234444444332 2467899999998765554 3444444
No 157
>PRK12377 putative replication protein; Provisional
Probab=98.65 E-value=8.7e-08 Score=73.98 Aligned_cols=36 Identities=22% Similarity=0.212 Sum_probs=29.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
...++++|++|+|||+||..+++.+......+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 368999999999999999999998776544556554
No 158
>PF14516 AAA_35: AAA-like domain
Probab=98.65 E-value=3.1e-06 Score=68.43 Aligned_cols=175 Identities=13% Similarity=0.096 Sum_probs=98.8
Q ss_pred CCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc--ccCchHH
Q 039455 21 FPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV--TRGLVPL 98 (216)
Q Consensus 21 ~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 98 (216)
.|...+.+|.|...-+++.+.+... +..+.|.||..+|||+|+..+...+++.--.+++++ +..... ..+...+
T Consensus 6 ~~~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 6 LPLDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQF 81 (331)
T ss_pred CCCCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHH
Confidence 3556778899996666666666532 479999999999999999999988765544455554 332221 2334444
Q ss_pred HHHHHHHHHhhccccc----------cchhhhHHHHHHHh-C--CceEEEEEeCCCCHH-------HHHHhhcCCCCC--
Q 039455 99 QEQLLSEVLMERNLII----------WDVHKGINLIRWRL-C--RKRVLVVLDDVDQLE-------QLQALAGNHDWF-- 156 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~----------~~~~~~~~~l~~~l-~--~~~~llvlDd~~~~~-------~~~~l~~~~~~~-- 156 (216)
...++..+........ .........+.+.+ . +++++|+||+++.+- ++-.++......
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 5555544433322111 11112233343332 2 579999999997542 222222111000
Q ss_pred -C---CCcEEEEEeC-Cchhhhc-----cCCcceEEecCCChHHHHHHHhhhh
Q 039455 157 -G---FGSRIIITTR-DEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 157 -~---~~~~il~tsr-~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
. ...++++... ....... ++....++|++|+.+|...|++++-
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~ 214 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYG 214 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhh
Confidence 0 1122222222 1111111 2345689999999999999998764
No 159
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.65 E-value=1.5e-07 Score=75.70 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=29.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
...+.++|++|+|||+|+..+++.+......+.|++
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 378999999999999999999998766555566664
No 160
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.65 E-value=1.8e-07 Score=72.95 Aligned_cols=61 Identities=21% Similarity=0.102 Sum_probs=38.4
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+.-+ ...+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus 136 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~g~tviivsH~~~~~~~~-~d~i~~l 202 (255)
T PRK11248 136 RVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQ-ETGKQVLLITHDIEEAVFM-ATELVLL 202 (255)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 4457777788899999998732 2334444433210 2367899999998776554 3444444
No 161
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.65 E-value=3.1e-07 Score=79.87 Aligned_cols=51 Identities=25% Similarity=0.353 Sum_probs=40.7
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
|..-+.++|++..++.+.+.+... ....++|+||+|+||||||+.+.+..+
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~--~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP--FPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 344567899999999987776532 346799999999999999999987653
No 162
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.65 E-value=5.9e-07 Score=69.33 Aligned_cols=162 Identities=16% Similarity=0.189 Sum_probs=93.8
Q ss_pred CCcccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (216)
|..-.+|+|.+...+.|.-++... ....-.+.++||+|.||||||..+++....++... + -....-
T Consensus 22 P~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~t------s-----Gp~leK 90 (332)
T COG2255 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKIT------S-----GPALEK 90 (332)
T ss_pred cccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEec------c-----cccccC
Confidence 445678999999999888877632 33456999999999999999999999875442110 0 011111
Q ss_pred HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH---------HHHHhhcCCC------------CCC
Q 039455 99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE---------QLQALAGNHD------------WFG 157 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~---------~~~~l~~~~~------------~~~ 157 (216)
..+++.-+ .. + ...-+|++|+++.+. .++++..... ...
T Consensus 91 ~gDlaaiL------------------t~-L-e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLp 150 (332)
T COG2255 91 PGDLAAIL------------------TN-L-EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLP 150 (332)
T ss_pred hhhHHHHH------------------hc-C-CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCC
Confidence 11111111 11 1 122388889886441 1222211100 001
Q ss_pred CCcEEEEEeCCchhhhccC--CcceEEecCCChHHHHHHHhhhhcC--CCCCchhHhhhcc
Q 039455 158 FGSRIIITTRDEHVLKGHG--VTNIYKVRGLDYVEALQLFHLKVSK--GKQPTDDRVELSK 214 (216)
Q Consensus 158 ~~~~il~tsr~~~~~~~~~--~~~~~~l~~l~~~~~~~ll~~~~~~--~~~~~~~~~~l~~ 214 (216)
+-.-|=.|||...+.+-+. .....+++-.+.+|..+++.+.+.. -...++...+|++
T Consensus 151 pFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~ 211 (332)
T COG2255 151 PFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIAR 211 (332)
T ss_pred CeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 1223336888664433321 3567889999999999999887633 3345566666664
No 163
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.64 E-value=9.1e-07 Score=67.57 Aligned_cols=154 Identities=21% Similarity=0.209 Sum_probs=91.0
Q ss_pred ccccccchhHHHH---HHHHHhcC----CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchH
Q 039455 25 VDGLVGIASRMEK---MNGYLEAG----LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVP 97 (216)
Q Consensus 25 ~~~~vgR~~~~~~---l~~~l~~~----~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (216)
-++.+|.++..+. |..+|..+ .=..+.|..+||+|+|||.+|+++++..+-.+ ...-
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~--l~vk-------------- 183 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPL--LLVK-------------- 183 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCce--EEec--------------
Confidence 4567888876554 56677644 12367999999999999999999998754321 1110
Q ss_pred HHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--------------HHHHHhhcCCCC--CCCCcE
Q 039455 98 LQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--------------EQLQALAGNHDW--FGFGSR 161 (216)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--------------~~~~~l~~~~~~--~~~~~~ 161 (216)
..+++....+.. .....+...+.-...+|+++||++|.+ +.+..++-.+.- .+.|..
T Consensus 184 -at~liGehVGdg------ar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVv 256 (368)
T COG1223 184 -ATELIGEHVGDG------ARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVV 256 (368)
T ss_pred -hHHHHHHHhhhH------HHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceE
Confidence 112222111110 111122223333457999999988644 223445444322 234555
Q ss_pred EEEEeCCchhhhcc---CCcceEEecCCChHHHHHHHhhhhcC
Q 039455 162 IIITTRDEHVLKGH---GVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 162 il~tsr~~~~~~~~---~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
.|.+|..+++++.. .....+++.--+++|..+++..++-.
T Consensus 257 tIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 257 TIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred EEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh
Confidence 56666655543331 23567888889999999999988744
No 164
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.64 E-value=1.6e-07 Score=74.59 Aligned_cols=53 Identities=17% Similarity=0.118 Sum_probs=36.4
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCC-cEEEEEeCCchhhhcc
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFG-SRIIITTRDEHVLKGH 175 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~-~~il~tsr~~~~~~~~ 175 (216)
.-.+...+..+|-+++||+.- ....+.+++..+. ..+ ..|++|||..+....+
T Consensus 144 rl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~--~~g~~tvlissH~l~e~~~~ 203 (293)
T COG1131 144 RLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELA--KEGGVTILLSTHILEEAEEL 203 (293)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHH--hCCCcEEEEeCCcHHHHHHh
Confidence 335778888999999999773 2244455554444 334 6899999998766654
No 165
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.64 E-value=1.3e-07 Score=71.27 Aligned_cols=61 Identities=18% Similarity=0.232 Sum_probs=39.5
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.- ..+.+..++..+. ..+..+|++||+.+....+ ++..+.+
T Consensus 133 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sH~~~~~~~~-~d~i~~l 199 (205)
T cd03226 133 QRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA--AQGKAVIVITHDYEFLAKV-CDRVLLL 199 (205)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 3445777778889999999873 2234444444332 2467899999998776554 4455544
No 166
>PRK06921 hypothetical protein; Provisional
Probab=98.64 E-value=8.1e-08 Score=75.14 Aligned_cols=37 Identities=24% Similarity=0.242 Sum_probs=30.0
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCC-CCceEeec
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 84 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~~~~~~~~ 84 (216)
....+.++|++|+|||+|+..+++.+.+. ...+.|+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 35789999999999999999999987655 45556654
No 167
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=98.63 E-value=2.4e-07 Score=70.19 Aligned_cols=63 Identities=17% Similarity=0.186 Sum_probs=40.5
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
...-.+...+..++-++++|+.-+ ...+..++..+. ..+..+|++||+.+....+ ++..+.+.
T Consensus 138 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tvi~~sH~~~~~~~~-~d~i~~l~ 206 (213)
T cd03235 138 QQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELR--REGMTILVVTHDLGLVLEY-FDRVLLLN 206 (213)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHh-cCEEEEEc
Confidence 334457777888899999998732 233444443332 2467899999998876654 45555543
No 168
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=98.63 E-value=2.8e-07 Score=69.63 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=38.7
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+.- ..+.+..++..+. ..+..+|++||+.+....+ ++..+.+
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~tH~~~~~~~~-~d~v~~l 199 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLR--DQGITVLISSHLLSEIQKV-ADRIGII 199 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEcCCHHHHHHh-cCEEEEE
Confidence 345777778888999999873 2233444444332 2467899999998876654 3444444
No 169
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=1.8e-07 Score=70.91 Aligned_cols=62 Identities=19% Similarity=0.168 Sum_probs=38.8
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.-. ...+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus 137 qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~-~d~v~~l 204 (213)
T cd03259 137 QRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQR-ELGITTIYVTHDQEEALAL-ADRIAVM 204 (213)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEecCHHHHHHh-cCEEEEE
Confidence 34457778888899999998732 2333333333220 1367899999998776554 4455544
No 170
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.63 E-value=1.1e-06 Score=70.30 Aligned_cols=170 Identities=17% Similarity=0.188 Sum_probs=104.4
Q ss_pred cccccccchhHHHHHHHHHhcCCCC-eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH
Q 039455 24 AVDGLVGIASRMEKMNGYLEAGLDD-VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL 102 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~~~~-~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (216)
..+.+.+|+.++..+..++...... +..+.|+|.+|+|||.+++.+......+ ..|+.+.. -..+....+.+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~---~vw~n~~e----cft~~~lle~I 76 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLE---NVWLNCVE----CFTYAILLEKI 76 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCc---ceeeehHH----hccHHHHHHHH
Confidence 4567899999999999999876553 4556999999999999999999877433 46665332 35666677777
Q ss_pred HHHHH-hhccccc-----cchhhhHHHHHH--HhC--CceEEEEEeCCCCHHHHHHh-----hcCCCCC-CCCcEEEEEe
Q 039455 103 LSEVL-MERNLII-----WDVHKGINLIRW--RLC--RKRVLVVLDDVDQLEQLQAL-----AGNHDWF-GFGSRIIITT 166 (216)
Q Consensus 103 ~~~~~-~~~~~~~-----~~~~~~~~~l~~--~l~--~~~~llvlDd~~~~~~~~~l-----~~~~~~~-~~~~~il~ts 166 (216)
+.... ...+... ..+......+.+ ... ++.++||||+++...++... +..+... -+...|+++.
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~ 156 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSA 156 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEec
Confidence 77763 2221111 111222333333 222 35899999999876543222 1111111 2344455444
Q ss_pred CCc--hhhhccC--CcceEEecCCChHHHHHHHhhhhc
Q 039455 167 RDE--HVLKGHG--VTNIYKVRGLDYVEALQLFHLKVS 200 (216)
Q Consensus 167 r~~--~~~~~~~--~~~~~~l~~l~~~~~~~ll~~~~~ 200 (216)
... .+..+.+ +.-.+.++..+.++...++.+.-.
T Consensus 157 ~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p 194 (438)
T KOG2543|consen 157 PSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNP 194 (438)
T ss_pred cccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCc
Confidence 432 2333233 345677888999999999886544
No 171
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.63 E-value=1.4e-07 Score=71.45 Aligned_cols=61 Identities=21% Similarity=0.182 Sum_probs=39.9
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.- ..+.+..++..+. ..+..+|++||+.+....+ +++.+.+
T Consensus 141 qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~--~~~~tvi~~sH~~~~~~~~-~d~i~~l 207 (211)
T cd03225 141 QRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLK--AEGKTIIIVTHDLDLLLEL-ADRVIVL 207 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 3445777788888899999873 2233444444333 2367899999998876664 4555554
No 172
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.63 E-value=2.8e-07 Score=70.21 Aligned_cols=61 Identities=15% Similarity=0.124 Sum_probs=38.0
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+.- ..+.+..++..+.. ..+..+|++||+.+....+ ++..+.+
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tvi~~tH~~~~~~~~-~d~i~~l 205 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKE-EFGMTILLTTHYMEEAEQL-CDRVAII 205 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 345777888889999999873 22333343333321 1267899999998776654 3444444
No 173
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=7.5e-07 Score=74.23 Aligned_cols=150 Identities=18% Similarity=0.235 Sum_probs=79.0
Q ss_pred ccccchhH---HHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCch
Q 039455 27 GLVGIASR---MEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLV 96 (216)
Q Consensus 27 ~~vgR~~~---~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (216)
+.-|-++. ++++.++|..+ +.=++-|.++||+|+|||-||++++++.. +.|+.+.++ .+
T Consensus 305 dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~-----VPFF~~sGS-----EF- 373 (752)
T KOG0734|consen 305 DVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAG-----VPFFYASGS-----EF- 373 (752)
T ss_pred cccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccC-----CCeEecccc-----ch-
Confidence 34556554 44555566533 22357899999999999999999998642 333332222 01
Q ss_pred HHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCCCCCC--CCcE
Q 039455 97 PLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNHDWFG--FGSR 161 (216)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~~~~--~~~~ 161 (216)
.+++ ... ........+...-..-|++|+||++|.. +-+.+++..+.-.. .|.-
T Consensus 374 ---dEm~----VGv-----GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiI 441 (752)
T KOG0734|consen 374 ---DEMF----VGV-----GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGII 441 (752)
T ss_pred ---hhhh----hcc-----cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceE
Confidence 1111 100 1112233444445567999999999754 23556655443222 2333
Q ss_pred EEEEeCCchhhhcc----C-CcceEEecCCChHHHHHHHhhhh
Q 039455 162 IIITTRDEHVLKGH----G-VTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 162 il~tsr~~~~~~~~----~-~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
||-+|..++.++.. + .+..+.++.-+..=..++|..+.
T Consensus 442 vigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl 484 (752)
T KOG0734|consen 442 VIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL 484 (752)
T ss_pred EEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence 34455544433321 2 34555565555444455554443
No 174
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.62 E-value=2.9e-07 Score=70.31 Aligned_cols=62 Identities=16% Similarity=0.128 Sum_probs=40.1
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEecC
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRG 185 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~~ 185 (216)
.-.+...+..++-++++|+.-. ...+..++..+. ..+..+|++||+.+....+ ++..+.+.|
T Consensus 157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~g~tii~vsH~~~~~~~~-~d~i~~~~~ 224 (224)
T TIGR02324 157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAK--ARGAALIGIFHDEEVRELV-ADRVMDVTP 224 (224)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHh-cceeEecCC
Confidence 3356777778888999998732 233444443332 2467899999998777655 456665543
No 175
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.62 E-value=2.5e-07 Score=71.27 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=38.9
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.- ....+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus 143 qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tvi~vsH~~~~~~~~-~d~v~~l 210 (235)
T cd03261 143 KRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKK-ELGLTSIMVTHDLDTAFAI-ADRIAVL 210 (235)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEecCHHHHHHh-cCEEEEE
Confidence 3445777888889999999873 22334444433321 1367899999998766554 3444444
No 176
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.61 E-value=3.4e-07 Score=69.46 Aligned_cols=61 Identities=15% Similarity=0.188 Sum_probs=39.6
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.. ....+..++..+. ..+..||++||+.+....+ ++..+.+
T Consensus 144 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~tH~~~~~~~~-~d~i~~l 210 (214)
T TIGR02673 144 QRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLN--KRGTTVIVATHDLSLVDRV-AHRVIIL 210 (214)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHh-cCEEEEe
Confidence 3445777888889999999873 2233444444332 2467899999998776655 4555544
No 177
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=7.4e-07 Score=75.30 Aligned_cols=171 Identities=19% Similarity=0.251 Sum_probs=101.1
Q ss_pred CCCcccccccchhHHH-HHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccc
Q 039455 21 FPSAVDGLVGIASRME-KMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVRE 88 (216)
Q Consensus 21 ~~~~~~~~vgR~~~~~-~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~ 88 (216)
-|...+.=||--.+++ +|.-.+..+ -.-..-|.++||+|+|||-||++++++..-+| ++. .
T Consensus 505 VPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NF-----isV-K- 577 (802)
T KOG0733|consen 505 VPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANF-----ISV-K- 577 (802)
T ss_pred cCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCce-----Eee-c-
Confidence 3444555566655555 454444321 12356899999999999999999999866554 220 0
Q ss_pred cccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCCCC
Q 039455 89 VSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNHDW 155 (216)
Q Consensus 89 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~~ 155 (216)
. .+++....++ +-......+.++-.+.+++|+||++|.+ .-+.+++-.+.-
T Consensus 578 -----G-----PELlNkYVGE------SErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDG 641 (802)
T KOG0733|consen 578 -----G-----PELLNKYVGE------SERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDG 641 (802)
T ss_pred -----C-----HHHHHHHhhh------HHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcc
Confidence 1 1222221111 1112233445555678999999999754 224555544431
Q ss_pred --CCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC---CCchhHhhhcc
Q 039455 156 --FGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK---QPTDDRVELSK 214 (216)
Q Consensus 156 --~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~---~~~~~~~~l~~ 214 (216)
...|..||-+|.-+++... + ..+..+-+..-+.++..++|+...-... .++=++++|++
T Consensus 642 l~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~ 710 (802)
T KOG0733|consen 642 LEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIAR 710 (802)
T ss_pred cccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhh
Confidence 1245666766665554332 1 2467788888899999999987765322 23346777765
No 178
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=98.61 E-value=3.5e-07 Score=69.32 Aligned_cols=60 Identities=8% Similarity=0.181 Sum_probs=38.8
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+.-+ .+.+..++..+. ..+..+|++||+.+....+ ++..+.+
T Consensus 144 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~--~~~~tiiivtH~~~~~~~~-~d~i~~l 209 (214)
T cd03292 144 RVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKIN--KAGTTVVVATHAKELVDTT-RHRVIAL 209 (214)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 3456777788889999998732 233444443332 2467899999998776654 4555544
No 179
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.61 E-value=8.9e-07 Score=71.30 Aligned_cols=146 Identities=15% Similarity=0.101 Sum_probs=78.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW 126 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 126 (216)
.-...++|+||+|+|||.+++.++....-.+ +.++ ...+ ...+.--.+..+++++. ....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~---i~vs-a~eL--~sk~vGEsEk~IR~~F~--------------~A~~ 205 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP---IVMS-AGEL--ESENAGEPGKLIRQRYR--------------EAAD 205 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---EEEE-HHHh--hcCcCCcHHHHHHHHHH--------------HHHH
Confidence 3467999999999999999999999875432 1111 1110 00010001111111111 0111
Q ss_pred Hh--CCceEEEEEeCCCCH------------HHH--HHhhcCC--------------CCCCCCcEEEEEeCCchhhhc--
Q 039455 127 RL--CRKRVLVVLDDVDQL------------EQL--QALAGNH--------------DWFGFGSRIIITTRDEHVLKG-- 174 (216)
Q Consensus 127 ~l--~~~~~llvlDd~~~~------------~~~--~~l~~~~--------------~~~~~~~~il~tsr~~~~~~~-- 174 (216)
.. .+++++|+|||+|.. .++ ..++..+ ....++..||.||..++.+..
T Consensus 206 ~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpAL 285 (413)
T PLN00020 206 IIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPL 285 (413)
T ss_pred HhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhH
Confidence 11 357999999998632 111 2333211 112345678888877654221
Q ss_pred cC---CcceEEecCCChHHHHHHHhhhhcCCCCCchhHhhhcc
Q 039455 175 HG---VTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSK 214 (216)
Q Consensus 175 ~~---~~~~~~l~~l~~~~~~~ll~~~~~~~~~~~~~~~~l~~ 214 (216)
+. .+.. +..-+.++..++++.+.-..+.+..++..|++
T Consensus 286 lRpGRfDk~--i~lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv~ 326 (413)
T PLN00020 286 IRDGRMEKF--YWAPTREDRIGVVHGIFRDDGVSREDVVKLVD 326 (413)
T ss_pred cCCCCCCce--eCCCCHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 11 2233 34567788888888776665555566666654
No 180
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.60 E-value=6.8e-08 Score=71.07 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=27.6
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
+...++++|++|+|||+||..++..+..+...+.|+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 4578999999999999999999987665545566654
No 181
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=3.2e-07 Score=80.23 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=93.0
Q ss_pred ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHH
Q 039455 25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLS 104 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 104 (216)
.++.+||++|+.+.++.|.....+.++ ++|++|+|||+++.-++.++.+. ....++....-. ..++ .
T Consensus 169 lDPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv~g-~VP~~L~~~~i~--sLD~----g---- 235 (786)
T COG0542 169 LDPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIVNG-DVPESLKDKRIY--SLDL----G---- 235 (786)
T ss_pred CCCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHhcC-CCCHHHcCCEEE--EecH----H----
Confidence 467999999999999998866444454 67999999999999999987543 111111100000 0000 0
Q ss_pred HHHhhccccccchhhhHHHHHHHhC-CceEEEEEeCCCC-----------HHHHHHhhcCCCCCCCCcEEEEEeCCchhh
Q 039455 105 EVLMERNLIIWDVHKGINLIRWRLC-RKRVLVVLDDVDQ-----------LEQLQALAGNHDWFGFGSRIIITTRDEHVL 172 (216)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~llvlDd~~~-----------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~ 172 (216)
.+..... ..-+++...+.+.+.+. .++.+|+||+++. .+...-+.+.+. ....++|-+|...++.
T Consensus 236 ~LvAGak-yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--RGeL~~IGATT~~EYR 312 (786)
T COG0542 236 SLVAGAK-YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA--RGELRCIGATTLDEYR 312 (786)
T ss_pred HHhcccc-ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--cCCeEEEEeccHHHHH
Confidence 0011111 11233444444444443 4589999998742 334444455554 2234556555544443
Q ss_pred hcc-------CCcceEEecCCChHHHHHHHhhh
Q 039455 173 KGH-------GVTNIYKVRGLDYVEALQLFHLK 198 (216)
Q Consensus 173 ~~~-------~~~~~~~l~~l~~~~~~~ll~~~ 198 (216)
..+ ..++.+.+...+.+++..+|+..
T Consensus 313 k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 313 KYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 222 25789999999999999999753
No 182
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.60 E-value=2.4e-07 Score=70.56 Aligned_cols=62 Identities=16% Similarity=0.040 Sum_probs=38.5
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.-+ ...+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus 138 qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sH~~~~~~~~-~d~i~~l 205 (220)
T cd03293 138 QRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWR-ETGKTVLLVTHDIDEAVFL-ADRVVVL 205 (220)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEecCHHHHHHh-CCEEEEE
Confidence 34457778888899999998732 2333343333210 2357899999998765554 4454444
No 183
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=98.60 E-value=3.2e-07 Score=70.96 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=35.4
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
....+...+..++-++++|+..+ ...+..++..+. ..+..+|++||+.+....+
T Consensus 148 qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~ 207 (242)
T PRK11124 148 QRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELA--ETGITQVIVTHEVEVARKT 207 (242)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHh
Confidence 34457777888889999998732 233334443332 2467899999998776554
No 184
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=98.60 E-value=2.3e-07 Score=72.36 Aligned_cols=28 Identities=29% Similarity=0.489 Sum_probs=24.4
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|.|++|+|||||++.+++...
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4568999999999999999999998643
No 185
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.60 E-value=2.3e-07 Score=69.65 Aligned_cols=122 Identities=20% Similarity=0.144 Sum_probs=67.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc-CCCCceEeeccc--cc-------------cccccCc--hHHHHHHHHHHHh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFLANV--RE-------------VSVTRGL--VPLQEQLLSEVLM 108 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~-~~~~~~~~~~~~--~~-------------~~~~~~~--~~~~~~l~~~~~~ 108 (216)
..+..++|.|++|+|||||++.+++... ......+.+... .. ....... .....+++ .
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l----~ 99 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFL----R 99 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHH----h
Confidence 3468999999999999999999998631 111222222100 00 0000000 00111111 1
Q ss_pred hccccccchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455 109 ERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG 174 (216)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~ 174 (216)
......+..+...-.+...+..++-++++|+.- ..+.+..++..+. ..+..+|++||+.+....
T Consensus 100 ~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~--~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 100 YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLR--EEGKSVLIITHYQRLLDY 169 (200)
T ss_pred hccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHHH
Confidence 111123334444556888888999999999873 2233444443332 236789999999887664
No 186
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.60 E-value=3.2e-07 Score=73.39 Aligned_cols=52 Identities=15% Similarity=0.054 Sum_probs=35.8
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG 174 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~ 174 (216)
.-.+...+..++-+++||+.. ....+..++..+. ..+..||+|||+.+.+..
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~--~~g~till~sH~l~e~~~ 203 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLL--ARGKTILLTTHFMEEAER 203 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--hCCCEEEEECCCHHHHHH
Confidence 335778888899999999773 2234445554443 347889999999876544
No 187
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=98.60 E-value=3.3e-07 Score=69.43 Aligned_cols=60 Identities=8% Similarity=0.122 Sum_probs=38.7
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+.- +.+.+..++..+. ..+..+|++||+.+....+ +++.+.+
T Consensus 143 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~~tvi~~sh~~~~~~~~-~d~i~~l 208 (213)
T cd03262 143 RVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLA--EEGMTMVVVTHEMGFAREV-ADRVIFM 208 (213)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 445777778888999999873 2233444444332 2367899999998776554 4455544
No 188
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.59 E-value=4e-07 Score=69.27 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=40.2
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
..-.+...+..++-++++|+.- ....+..++..+.. ..+..||++||+.+... + ++..+.+.
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~-~-~d~v~~l~ 214 (218)
T cd03255 147 QRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNK-EAGTTIVVVTHDPELAE-Y-ADRIIELR 214 (218)
T ss_pred HHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCeEEEEECCHHHHh-h-hcEEEEee
Confidence 3445778888899999999873 22344444443321 13678999999987765 3 56665553
No 189
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.59 E-value=2.6e-07 Score=69.48 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=24.9
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|.|++|+|||||++.+++...
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 4568999999999999999999998765
No 190
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=3e-06 Score=68.50 Aligned_cols=160 Identities=13% Similarity=0.034 Sum_probs=86.8
Q ss_pred cccc-chhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC--CceEeeccccccccccCchHHHHHHH
Q 039455 27 GLVG-IASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF--EASSFLANVREVSVTRGLVPLQEQLL 103 (216)
Q Consensus 27 ~~vg-R~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (216)
.++| -+...+.|...+..+ .-...+.++||.|+|||++|+.++..+.... ....... ...+..+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~-----------C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGT-----------CTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCc-----------CHHHHHHh
Confidence 4566 666777777777643 3346789999999999999999998653221 0000000 00000000
Q ss_pred HHHHhhc-----cccccchhhhHHHHHH----HhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-h
Q 039455 104 SEVLMER-----NLIIWDVHKGINLIRW----RLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-V 171 (216)
Q Consensus 104 ~~~~~~~-----~~~~~~~~~~~~~l~~----~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~ 171 (216)
....... .......+........ ...+++-++|||+++.. +....++..+..-..++.+|++|.+.. +
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 0000000 0000111111111111 12345668999999755 345556655543345666777776542 3
Q ss_pred hhcc-CCcceEEecCCChHHHHHHHhhh
Q 039455 172 LKGH-GVTNIYKVRGLDYVEALQLFHLK 198 (216)
Q Consensus 172 ~~~~-~~~~~~~l~~l~~~~~~~ll~~~ 198 (216)
...+ .....+++++++.++..+.+...
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence 3332 23578999999999998888754
No 191
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=98.59 E-value=2.9e-07 Score=71.22 Aligned_cols=62 Identities=16% Similarity=0.101 Sum_probs=38.5
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+..+ ...+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus 152 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiii~tH~~~~~~~~-~d~v~~l 219 (243)
T TIGR02315 152 QRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINK-EDGITVIINLHQVDLAKKY-ADRIVGL 219 (243)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHh-cCeEEEE
Confidence 34457778888889999998732 2333344433321 1367899999998876554 3444444
No 192
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.59 E-value=2e-07 Score=72.49 Aligned_cols=128 Identities=16% Similarity=0.170 Sum_probs=66.5
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCc--------eEeeccccccccc--cCch-----------HHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--------SSFLANVREVSVT--RGLV-----------PLQEQLLSE 105 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~-----------~~~~~l~~~ 105 (216)
..+..++|.|++|+|||||++.+++........ +.++.--...... .... .....++..
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPALKR 107 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHHHHH
Confidence 346899999999999999999999865322111 1111100000000 0000 001111111
Q ss_pred HHhh-----ccccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455 106 VLME-----RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKG 174 (216)
Q Consensus 106 ~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~ 174 (216)
+... .....+..+...-.+...+..++-++++|+..+ ...+..++..+.. ..+..||++||+.+....
T Consensus 108 ~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~g~tiiivsH~~~~i~~ 186 (251)
T PRK09544 108 VQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRR-ELDCAVLMVSHDLHLVMA 186 (251)
T ss_pred cCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHH
Confidence 1100 001112233344457778888999999998732 2333344433221 126789999999877655
Q ss_pred c
Q 039455 175 H 175 (216)
Q Consensus 175 ~ 175 (216)
+
T Consensus 187 ~ 187 (251)
T PRK09544 187 K 187 (251)
T ss_pred h
Confidence 4
No 193
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.58 E-value=5e-07 Score=68.81 Aligned_cols=59 Identities=17% Similarity=0.106 Sum_probs=37.9
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+... .+.+..++..+. .+..+|++||+.+....+ ++..+.+
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sH~~~~~~~~-~d~i~~l 205 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVR---KGRSIILTTHSMDEAEAL-CDRIAIM 205 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHh---cCCEEEEEcCCHHHHHHh-cCEEEEE
Confidence 3457777888999999998732 233444443332 247899999998876554 3444444
No 194
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=98.58 E-value=4.5e-07 Score=69.22 Aligned_cols=53 Identities=17% Similarity=0.190 Sum_probs=35.6
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.-.+...+...+-++++|+.. ..+.+..++..+. ..+..||++||+.+....+
T Consensus 132 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~--~~~~tiii~sH~~~~~~~~ 190 (223)
T TIGR03740 132 RLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFP--EQGITVILSSHILSEVQQL 190 (223)
T ss_pred HHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEEcCCHHHHHHh
Confidence 335677778889999999773 2234444444433 2467899999998776544
No 195
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.58 E-value=4.9e-07 Score=69.42 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=37.8
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+.- +.+.+..++..+. ..+..||++||+.+....+ ++..+.+
T Consensus 141 rl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~--~~~~tii~~sH~~~~~~~~-~d~i~~l 206 (232)
T cd03218 141 RVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILK--DRGIGVLITDHNVRETLSI-TDRAYII 206 (232)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 345777788889999999773 2233444444333 2467899999998655554 3344333
No 196
>PRK10908 cell division protein FtsE; Provisional
Probab=98.58 E-value=4.3e-07 Score=69.31 Aligned_cols=62 Identities=13% Similarity=0.177 Sum_probs=39.8
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
..-.+...+..++-++++|+.-+ .+.+..++..+. ..+..+|++||+.+....+ ++..+.+.
T Consensus 144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~~-~d~i~~l~ 211 (222)
T PRK10908 144 QRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN--RVGVTVLMATHDIGLISRR-SYRMLTLS 211 (222)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-CCEEEEEE
Confidence 34457777788889999998732 233444444332 2467899999998876664 44555443
No 197
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.58 E-value=9.1e-07 Score=66.61 Aligned_cols=133 Identities=13% Similarity=0.111 Sum_probs=70.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCce------Eeecccc---------ccccccCc-hHHHHHHHHH-----
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS------SFLANVR---------EVSVTRGL-VPLQEQLLSE----- 105 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~------~~~~~~~---------~~~~~~~~-~~~~~~l~~~----- 105 (216)
+.+..++|.|++|+|||||++.+++........+ .++..-. ........ ..........
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~ 108 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEP 108 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHH
Confidence 4568999999999999999999998654322111 1111000 00000000 0011111111
Q ss_pred -HHhh----------ccccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHH-hhcCCCCCCCCcEEEEEeC
Q 039455 106 -VLME----------RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQA-LAGNHDWFGFGSRIIITTR 167 (216)
Q Consensus 106 -~~~~----------~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~-l~~~~~~~~~~~~il~tsr 167 (216)
+... .....+..+...-.+...+..++-++++|+..+ .+.+.. ++.... ..+..+|++||
T Consensus 109 ~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~--~~~~tvi~~sh 186 (204)
T cd03250 109 DLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLL--LNNKTRILVTH 186 (204)
T ss_pred HHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--cCCCEEEEEeC
Confidence 1000 001122333445568888889999999998732 122322 332222 23678999999
Q ss_pred CchhhhccCCcceEEe
Q 039455 168 DEHVLKGHGVTNIYKV 183 (216)
Q Consensus 168 ~~~~~~~~~~~~~~~l 183 (216)
+...... ++..+.+
T Consensus 187 ~~~~~~~--~d~i~~l 200 (204)
T cd03250 187 QLQLLPH--ADQIVVL 200 (204)
T ss_pred CHHHHhh--CCEEEEE
Confidence 9876664 4555554
No 198
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.58 E-value=3.2e-07 Score=69.56 Aligned_cols=61 Identities=15% Similarity=0.108 Sum_probs=37.5
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+.-. ...+..++..+.. ..+..+|++||+.+....+ +++.+.+
T Consensus 138 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tvi~~sH~~~~~~~~-~d~i~~l 204 (213)
T cd03301 138 RVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQ-RLGTTTIYVTHDQVEAMTM-ADRIAVM 204 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHh-cCeEEEE
Confidence 3457777778888999998732 2333333333220 1367899999998766554 3444444
No 199
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.58 E-value=6e-07 Score=77.63 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=35.1
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
....+...+..++-++++|+.. ....+..++..+. ..||++||+.+.+...
T Consensus 170 qrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-----~tviiisHd~~~~~~~ 226 (556)
T PRK11819 170 RRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-----GTVVAVTHDRYFLDNV 226 (556)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-----CeEEEEeCCHHHHHhh
Confidence 3445777888889999999873 2234444544432 4799999999876654
No 200
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=3.4e-06 Score=67.95 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=47.4
Q ss_pred CceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-CCcceEEecCCChHHHHHHHhhhh
Q 039455 130 RKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VLKGH-GVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 130 ~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~~-~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
++.-++|||+++.. .....++..+..-..++.+|++|++.+ +...+ ..-..+.+.|++.+++.+.+....
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc
Confidence 34557788999854 556666665554345677777777653 33332 234679999999999999998653
No 201
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.58 E-value=7.4e-07 Score=69.74 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..+.|.|++|+|||+||+.++...
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~l 45 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKR 45 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 678899999999999999999755
No 202
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.58 E-value=4.2e-07 Score=69.16 Aligned_cols=60 Identities=13% Similarity=0.178 Sum_probs=38.8
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...+...+..++-++++|+... .+.+..++..+. ..+..+|++||+.+....+ ++..+.+
T Consensus 144 rv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~tH~~~~~~~~-~d~i~~l 209 (218)
T cd03266 144 KVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLR--ALGKCILFSTHIMQEVERL-CDRVVVL 209 (218)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence 3457777788889999998732 233444444332 2467899999998766554 4444444
No 203
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.58 E-value=8.3e-07 Score=73.41 Aligned_cols=117 Identities=21% Similarity=0.187 Sum_probs=74.5
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCC
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCR 130 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 130 (216)
+++|.||.++||||+++.+.....+. .+++...... ...... .+... .+......
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~---~~~~~l-~d~~~------------------~~~~~~~~ 93 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLR---LDRIEL-LDLLR------------------AYIELKER 93 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchh---cchhhH-HHHHH------------------HHHHhhcc
Confidence 99999999999999997777665444 3333211110 000000 11111 11111112
Q ss_pred ceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc-----c-CCcceEEecCCChHHHHH
Q 039455 131 KRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG-----H-GVTNIYKVRGLDYVEALQ 193 (216)
Q Consensus 131 ~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~-----~-~~~~~~~l~~l~~~~~~~ 193 (216)
++..++||++.....|...+..+.+.++. .+++|+.+..+... + +....+++-|||..|...
T Consensus 94 ~~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 94 EKSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred CCceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 67899999999999998888777655555 78887776644332 1 346889999999999865
No 204
>PRK06526 transposase; Provisional
Probab=98.57 E-value=5e-07 Score=70.19 Aligned_cols=34 Identities=26% Similarity=0.087 Sum_probs=26.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEe
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF 82 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~ 82 (216)
...++++||+|+|||+|+..++.........+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 4679999999999999999999876544333333
No 205
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.57 E-value=3.9e-07 Score=72.84 Aligned_cols=53 Identities=15% Similarity=0.055 Sum_probs=35.8
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.-.+...+..++-++++|+.- ....+..++..+. ..+..||++||+.+.+..+
T Consensus 143 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~--~~g~til~~sH~~~~~~~~ 201 (303)
T TIGR01288 143 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL--ARGKTILLTTHFMEEAERL 201 (303)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--hCCCEEEEECCCHHHHHHh
Confidence 335777788899999999873 2234444444443 2467899999998765543
No 206
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.56 E-value=7.4e-07 Score=79.39 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=86.6
Q ss_pred cccccchhHHHHHHHHHhcC----CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455 26 DGLVGIASRMEKMNGYLEAG----LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 101 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~----~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
...+|.++..++|..++... ...+..++++||+|+||||+++.++......|..+.+-. . ... ..
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~-~------~d~----~~ 390 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGG-V------RDE----AE 390 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCC-C------CCH----HH
Confidence 35899999999999887731 235678999999999999999999987654332222111 0 111 01
Q ss_pred HHHHHHhhc-cccccchhhhHHHHHHHhCCceEEEEEeCCCCHHH------HHHhhcCCC--------CC------C-CC
Q 039455 102 LLSEVLMER-NLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ------LQALAGNHD--------WF------G-FG 159 (216)
Q Consensus 102 l~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~------~~~l~~~~~--------~~------~-~~ 159 (216)
+ .+.. .+...........+...-...+ +++||+++.... ...++..+. ++ . .+
T Consensus 391 i----~g~~~~~~g~~~G~~~~~l~~~~~~~~-villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~ 465 (784)
T PRK10787 391 I----RGHRRTYIGSMPGKLIQKMAKVGVKNP-LFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSD 465 (784)
T ss_pred h----ccchhccCCCCCcHHHHHHHhcCCCCC-EEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCc
Confidence 1 0000 0000011122333333222233 788999964421 222322211 00 0 23
Q ss_pred cEEEEEeCCchhhhc-cCCcceEEecCCChHHHHHHHhhhh
Q 039455 160 SRIIITTRDEHVLKG-HGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 160 ~~il~tsr~~~~~~~-~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
..+|.|+....+... ++....+++.+++.++-.++.+++.
T Consensus 466 v~~i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 466 VMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred eEEEEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 444555544322111 2344789999999999988887766
No 207
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.56 E-value=5e-07 Score=69.46 Aligned_cols=62 Identities=16% Similarity=0.205 Sum_probs=38.3
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.-+ ...+..++..+.. ..+..||++||+.+....+ +++.+.+
T Consensus 147 qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tvii~sH~~~~~~~~-~d~i~~l 214 (233)
T cd03258 147 QRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINR-ELGLTIVLITHEMEVVKRI-CDRVAVM 214 (233)
T ss_pred HHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 34457777788888999998732 2333344433320 2367899999998776554 3444444
No 208
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.56 E-value=6.6e-06 Score=62.70 Aligned_cols=185 Identities=17% Similarity=0.135 Sum_probs=97.3
Q ss_pred HhhcCCCCCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455 14 SKRLNPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR 93 (216)
Q Consensus 14 ~~~~~~~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (216)
+.+.+......+..+++..+.-+.+..+-..-.+....+.++|+-|+|||++.+.+..-..+.--.+++++ ....
T Consensus 16 ~~~~pf~~~~~~~~~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~ 90 (269)
T COG3267 16 FSRLPFSWDIQPGLDYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTL 90 (269)
T ss_pred hccCCCccchhhhhhhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----Ccch
Confidence 34444444334445555555544444432222344579999999999999999955544433222333332 1122
Q ss_pred CchHHHHHHHHHHHhhccccccchhhhHH----HHHHHh-CCce-EEEEEeCCCCH-----HHHHHhhcCCCCCCCCcEE
Q 039455 94 GLVPLQEQLLSEVLMERNLIIWDVHKGIN----LIRWRL-CRKR-VLVVLDDVDQL-----EQLQALAGNHDWFGFGSRI 162 (216)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~l~~~l-~~~~-~llvlDd~~~~-----~~~~~l~~~~~~~~~~~~i 162 (216)
....+...++..+.... ......... .+.... .+++ ..+++||+..+ +.+.-+...-...+..-.|
T Consensus 91 s~~~~~~ai~~~l~~~p---~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~i 167 (269)
T COG3267 91 SDATLLEAIVADLESQP---KVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSI 167 (269)
T ss_pred hHHHHHHHHHHHhccCc---cchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceee
Confidence 33445556665554422 222222222 233333 3444 89999998533 2233332222222223456
Q ss_pred EEEeCCc--------hhhhccCCcce-EEecCCChHHHHHHHhhhhcCCCCCc
Q 039455 163 IITTRDE--------HVLKGHGVTNI-YKVRGLDYVEALQLFHLKVSKGKQPT 206 (216)
Q Consensus 163 l~tsr~~--------~~~~~~~~~~~-~~l~~l~~~~~~~ll~~~~~~~~~~~ 206 (216)
++..... .+......... |++.|++.++...|++....+.+.++
T Consensus 168 vL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~ 220 (269)
T COG3267 168 VLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPE 220 (269)
T ss_pred eecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCc
Confidence 6655532 11111122333 99999999999999998776655443
No 209
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=6.6e-08 Score=70.17 Aligned_cols=122 Identities=18% Similarity=0.152 Sum_probs=68.0
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccc-ccccc-----------ccCc---hHHHHH--HHHHHHhh-
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANV-REVSV-----------TRGL---VPLQEQ--LLSEVLME- 109 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~---~~~~~~--l~~~~~~~- 109 (216)
.+..+.|+|++|+|||||++.+++-.+.....+.|-... ..... ...+ ....+. +...+...
T Consensus 27 ~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~ 106 (209)
T COG4133 27 AGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSG 106 (209)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCC
Confidence 457999999999999999999999776655555554211 00000 0000 000111 11111111
Q ss_pred --------------------ccccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEE
Q 039455 110 --------------------RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRII 163 (216)
Q Consensus 110 --------------------~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il 163 (216)
.-...+..+.....+.+..-..+-+-|||+... ...+..++.. ++..|..||
T Consensus 107 ~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~--H~~~GGiVl 184 (209)
T COG4133 107 NAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAA--HAAQGGIVL 184 (209)
T ss_pred chhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHH--HhcCCCEEE
Confidence 001122334445567788888888999998742 2334444322 235788999
Q ss_pred EEeCCchh
Q 039455 164 ITTRDEHV 171 (216)
Q Consensus 164 ~tsr~~~~ 171 (216)
+|||.+..
T Consensus 185 lttHq~l~ 192 (209)
T COG4133 185 LTTHQPLP 192 (209)
T ss_pred EecCCccC
Confidence 99997743
No 210
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=98.55 E-value=5.2e-07 Score=68.41 Aligned_cols=61 Identities=16% Similarity=0.105 Sum_probs=37.9
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+... ...+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus 136 rl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tii~vsh~~~~~~~~-~d~v~~l 202 (213)
T TIGR01277 136 RVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCS-ERQRTLLMVTHHLSDARAI-ASQIAVV 202 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHhh-cCeEEEE
Confidence 4456777778889999998732 2334444433320 2367899999998765543 4454444
No 211
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=98.55 E-value=5e-07 Score=69.08 Aligned_cols=60 Identities=13% Similarity=0.096 Sum_probs=38.3
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+..+ ...+..++..+. ..+..||++||+.+.+..+ +++.+.+
T Consensus 150 rv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~--~~~~tiii~sH~~~~~~~~-~d~i~~l 215 (224)
T cd03220 150 RLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELL--KQGKTVILVSHDPSSIKRL-CDRALVL 215 (224)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 3457888888999999998732 223333333332 2357899999998776654 3444444
No 212
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.55 E-value=1.7e-06 Score=61.94 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=74.1
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCch------------------------------
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLV------------------------------ 96 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 96 (216)
..+..++|+||+|+|||||.+.++..+.....-+.|-...-+ .....
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs---~~~pea~Rq~VsY~~Q~paLfg~tVeDNlifP~~~ 103 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS---TLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQI 103 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccc---ccChHHHHHHHHHHHcCccccccchhhccccchHH
Confidence 346789999999999999999999865543333333210000 00000
Q ss_pred -------HHHHHHHHHHHhh------ccccccchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCC
Q 039455 97 -------PLQEQLLSEVLME------RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFG 157 (216)
Q Consensus 97 -------~~~~~l~~~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~ 157 (216)
....+++...... .-...+..+.....+.+.+.-.+-+|+||+.- +...++.++..+.. .
T Consensus 104 r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~-~ 182 (223)
T COG4619 104 RNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVR-E 182 (223)
T ss_pred hccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhh-h
Confidence 1111111111100 00112233444556777788888899999773 34556777655542 3
Q ss_pred CCcEEEEEeCCchhhhccCCcceEEecC
Q 039455 158 FGSRIIITTRDEHVLKGHGVTNIYKVRG 185 (216)
Q Consensus 158 ~~~~il~tsr~~~~~~~~~~~~~~~l~~ 185 (216)
....++-.||+.+-...+ .+..+.+.+
T Consensus 183 q~vAv~WiTHd~dqa~rh-a~k~itl~~ 209 (223)
T COG4619 183 QNVAVLWITHDKDQAIRH-ADKVITLQP 209 (223)
T ss_pred hceEEEEEecChHHHhhh-hheEEEecc
Confidence 456678888887654444 334444443
No 213
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.54 E-value=3.4e-07 Score=70.21 Aligned_cols=55 Identities=13% Similarity=0.106 Sum_probs=35.7
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
....+...+..++-++++|+.- +...+..++..+.. ..+..+|++||+.+....+
T Consensus 138 qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~ 198 (230)
T TIGR03410 138 QQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA-EGGMAILLVEQYLDFAREL 198 (230)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-cCCcEEEEEeCCHHHHHHh
Confidence 3445777778888999999873 22334444433321 1367899999998876654
No 214
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.54 E-value=5.2e-07 Score=70.12 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=30.3
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
+...++++|++|+|||+||.++++++......+.++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 5679999999999999999999998874444555554
No 215
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.54 E-value=4.5e-07 Score=71.02 Aligned_cols=54 Identities=6% Similarity=0.021 Sum_probs=35.1
Q ss_pred hHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
..-.+...+..++-++++|+..+. +.+..++..+. ..+..||++||+......+
T Consensus 150 qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~--~~g~tiIiisH~~~~i~~~ 209 (264)
T PRK13546 150 AKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK--EQNKTIFFVSHNLGQVRQF 209 (264)
T ss_pred HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHH--HCCCEEEEEcCCHHHHHHH
Confidence 344577788888999999987421 22333333332 3467899999998765543
No 216
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=98.54 E-value=7.1e-07 Score=69.33 Aligned_cols=60 Identities=8% Similarity=0.082 Sum_probs=37.9
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+..+ ...+..++..+. ..+..+|++||+.+....+ ++..+.+
T Consensus 152 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~~tvi~~tH~~~~~~~~-~d~i~~l 217 (250)
T PRK11264 152 RVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLA--QEKRTMVIVTHEMSFARDV-ADRAIFM 217 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence 3457777788889999998732 233444443332 2467899999998776554 3344333
No 217
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=98.53 E-value=2.1e-07 Score=71.46 Aligned_cols=62 Identities=13% Similarity=-0.033 Sum_probs=38.1
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.-+ ...+..++..+.. ..+..||++||+.+....+ +++.+.+
T Consensus 121 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~-~d~v~~l 188 (230)
T TIGR01184 121 QRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWE-EHRVTVLMVTHDVDEALLL-SDRVVML 188 (230)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence 34457777888889999998732 2334443333220 1367899999998765554 3444444
No 218
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.53 E-value=4.4e-07 Score=70.04 Aligned_cols=62 Identities=10% Similarity=0.037 Sum_probs=38.2
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.-+ ...+..++..+.. ..+..||++||+.+....+ +++.+.+
T Consensus 143 qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tvii~sH~~~~~~~~-~d~i~~l 210 (239)
T cd03296 143 QRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD-ELHVTTVFVTHDQEEALEV-ADRVVVM 210 (239)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 34457777788889999998732 2334444433321 1367899999998765544 3444444
No 219
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.6e-06 Score=73.88 Aligned_cols=170 Identities=21% Similarity=0.207 Sum_probs=95.5
Q ss_pred CCccccccc-chhHHHHHHHHHh-----------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccc
Q 039455 22 PSAVDGLVG-IASRMEKMNGYLE-----------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREV 89 (216)
Q Consensus 22 ~~~~~~~vg-R~~~~~~l~~~l~-----------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
|...+.=+| -++...+|...+. -+-...+-|.++||+|+|||++|+.+++...-.|-.+-
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvk-------- 500 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVK-------- 500 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeecc--------
Confidence 344455566 4444445554332 11244689999999999999999999998765542220
Q ss_pred ccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH-------------HHHHhhcCCCCC
Q 039455 90 SVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE-------------QLQALAGNHDWF 156 (216)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~~~ 156 (216)
..+++....+. +-......+.+.-+-.+++|+||++|+.. -+..++..+.=.
T Consensus 501 ---------gpEL~sk~vGe------SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~ 565 (693)
T KOG0730|consen 501 ---------GPELFSKYVGE------SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGL 565 (693)
T ss_pred ---------CHHHHHHhcCc------hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccc
Confidence 01122211111 11112223333444567999999997552 133444433211
Q ss_pred --CCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCCCCch-hHhhhcc
Q 039455 157 --GFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGKQPTD-DRVELSK 214 (216)
Q Consensus 157 --~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~~~~~-~~~~l~~ 214 (216)
.++..||-.|.-++..+. + ..+..+.+++-+.+...++|+.++-+-..+++ ++++|+.
T Consensus 566 e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~ 631 (693)
T KOG0730|consen 566 EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQ 631 (693)
T ss_pred cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHH
Confidence 123444444443433222 1 25788999999999999999988855543333 5666654
No 220
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.53 E-value=1.9e-07 Score=75.61 Aligned_cols=53 Identities=15% Similarity=0.055 Sum_probs=36.5
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.-.+...+..++-++++|+.- ....+.+++..+. ..+..||++||+.+....+
T Consensus 180 rv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~--~~g~tilisSH~l~e~~~~ 238 (340)
T PRK13536 180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLL--ARGKTILLTTHFMEEAERL 238 (340)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEECCCHHHHHHh
Confidence 345777888899999999773 2344555554443 2477899999998765543
No 221
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.53 E-value=3.6e-07 Score=70.45 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=37.8
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.. ....+..++..+. ..+..||++||+.+....+ +++.+.+
T Consensus 144 qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~~-~d~i~~l 210 (237)
T PRK11614 144 QMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLR--EQGMTIFLVEQNANQALKL-ADRGYVL 210 (237)
T ss_pred HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCcHHHHHhh-CCEEEEE
Confidence 3445777777888999999773 2233444443332 2467899999998755544 3444333
No 222
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.53 E-value=8.3e-07 Score=66.86 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=36.6
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
..-.+...+..++-++++|+.. ..+.+..++..+. ..+..||++||+......+
T Consensus 136 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~i~~~ 195 (204)
T PRK13538 136 RRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHA--EQGGMVILTTHQDLPVASD 195 (204)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--HCCCEEEEEecChhhhccC
Confidence 3445777888899999999873 2233444444332 2357899999998877765
No 223
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.53 E-value=1.6e-07 Score=72.66 Aligned_cols=93 Identities=18% Similarity=0.122 Sum_probs=53.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcC-CCCceEeeccccccccccCchHHHHHHHHHHHhhccc--cccch---hhh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNL--IIWDV---HKG 120 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~---~~~ 120 (216)
..+..++|+|++|+|||||++.+++.+.. +|+...|+...... .....++...+...+...... +.... ...
T Consensus 14 ~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er--~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 14 GKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDER--PEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCC--CccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 34689999999999999999999997654 46777787633321 134555555551111111000 00000 111
Q ss_pred HHHHHHH-hCCceEEEEEeCCC
Q 039455 121 INLIRWR-LCRKRVLVVLDDVD 141 (216)
Q Consensus 121 ~~~l~~~-l~~~~~llvlDd~~ 141 (216)
....... -.+++.++++|++.
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHH
Confidence 1112222 23689999999984
No 224
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.52 E-value=7.3e-07 Score=71.21 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=34.9
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG 174 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~ 174 (216)
.-.+...+..++-++++|+.. ..+.+..++..+. .+..||++||+.+.+..
T Consensus 141 rv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~---~~~tiii~sH~l~~~~~ 197 (301)
T TIGR03522 141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIG---KDKTIILSTHIMQEVEA 197 (301)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhc---CCCEEEEEcCCHHHHHH
Confidence 335777888899999999773 2244555555543 25789999999865443
No 225
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=98.52 E-value=8.3e-07 Score=67.80 Aligned_cols=54 Identities=24% Similarity=0.239 Sum_probs=36.4
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
..-.+...+..++-++++|+.. +...+..++..+. ..+..+|++||+.+....+
T Consensus 120 qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~--~~~~tvii~sH~~~~~~~~ 179 (223)
T TIGR03771 120 QRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELA--GAGTAILMTTHDLAQAMAT 179 (223)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHh
Confidence 3446778888899999999773 2244444444332 3467899999998765543
No 226
>PRK13409 putative ATPase RIL; Provisional
Probab=98.52 E-value=3.9e-07 Score=78.98 Aligned_cols=128 Identities=19% Similarity=0.137 Sum_probs=68.9
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEe---ecc-ccccc--cccCchHHH-------------HHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF---LAN-VREVS--VTRGLVPLQ-------------EQLLSEVL 107 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~---~~~-~~~~~--~~~~~~~~~-------------~~l~~~~~ 107 (216)
..+.+++|.|++|+|||||++.+++........+.| +.. .+... ....+...+ ..++..+.
T Consensus 363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~ 442 (590)
T PRK13409 363 YEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQ 442 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCC
Confidence 356799999999999999999999865432211111 000 01100 000111111 11111110
Q ss_pred h-----hccccccchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 108 M-----ERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 108 ~-----~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
. ......+..+.....+..++..++-++++|+.- ....+..++..+.. ..+..+|++||+.+++..+
T Consensus 443 l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tviivsHD~~~~~~~ 520 (590)
T PRK13409 443 LERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAE-EREATALVVDHDIYMIDYI 520 (590)
T ss_pred CHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh
Confidence 0 000112223334446788888999999999773 22334444444321 2367899999998876665
No 227
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=4.7e-07 Score=68.54 Aligned_cols=62 Identities=11% Similarity=0.073 Sum_probs=39.0
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+..+ .+.+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus 135 qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~-~d~i~~l 202 (211)
T cd03298 135 QRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHA-ETKMTVLMVTHQPEDAKRL-AQRVVFL 202 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHhh-hCEEEEE
Confidence 34457777788899999998732 2333343333210 2367899999998876654 3454444
No 228
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.52 E-value=6.9e-07 Score=70.23 Aligned_cols=56 Identities=11% Similarity=-0.008 Sum_probs=36.0
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...-.+...+..++-++++|+.- ....+..++..+.. ..+..||++||+.+....+
T Consensus 166 ~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tiii~tH~~~~~~~~ 227 (269)
T cd03294 166 QQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA-ELQKTIVFITHDLDEALRL 227 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 33445788888899999999873 22334444433321 2367899999998765443
No 229
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.2e-06 Score=68.92 Aligned_cols=136 Identities=21% Similarity=0.229 Sum_probs=72.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc----CCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK----DQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLI 124 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 124 (216)
.+.|.++||+|+|||+|-+.+++++. .+|.....+. -+--.++...+.+ .+ --...+.+.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE--------inshsLFSKWFsE----Sg---KlV~kmF~kI 241 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE--------INSHSLFSKWFSE----SG---KLVAKMFQKI 241 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE--------EehhHHHHHHHhh----hh---hHHHHHHHHH
Confidence 67999999999999999999999653 3343333331 1111222222221 10 0123334445
Q ss_pred HHHhCCce--EEEEEeCCCCHHH-----------------HHHhhcCCCCC--CCCcEEEEEeCCchhhh---ccCCcce
Q 039455 125 RWRLCRKR--VLVVLDDVDQLEQ-----------------LQALAGNHDWF--GFGSRIIITTRDEHVLK---GHGVTNI 180 (216)
Q Consensus 125 ~~~l~~~~--~llvlDd~~~~~~-----------------~~~l~~~~~~~--~~~~~il~tsr~~~~~~---~~~~~~~ 180 (216)
......+. +.+.+|++.++.. +..++-.+... .++.-||.||...+-.+ .-..+-+
T Consensus 242 ~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~ 321 (423)
T KOG0744|consen 242 QELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIV 321 (423)
T ss_pred HHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhhHhhhe
Confidence 55555543 4556898854421 22222111111 12343444443222111 1125677
Q ss_pred EEecCCChHHHHHHHhhhh
Q 039455 181 YKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 181 ~~l~~l~~~~~~~ll~~~~ 199 (216)
+.+.|-+.+...++++.+.
T Consensus 322 ~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 322 FYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred eecCCccHHHHHHHHHHHH
Confidence 8899999998888887765
No 230
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=98.51 E-value=6.9e-07 Score=68.85 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=39.3
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+.-. ...+..++..+.. ..+..||++||+.+.+..+ +++.+.+
T Consensus 161 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~-~d~i~~l 227 (236)
T cd03267 161 RAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNR-ERGTTVLLTSHYMKDIEAL-ARRVLVI 227 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCEEEEEecCHHHHHHh-CCEEEEE
Confidence 3357777888899999998732 2344444443321 2357899999999876665 4455544
No 231
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.4e-06 Score=68.66 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhcCCCCCCcccccccchhHHHHHHHHHhcC----------CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 5 LIKDIVKEISKRLNPTFPSAVDGLVGIASRMEKMNGYLEAG----------LDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
|++-+-+++.++.+. .......|-++..+-|...+.-+ ..-=+.++++||+|+|||.||++++.+..
T Consensus 194 Lve~lerdIl~~np~---ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~ 270 (491)
T KOG0738|consen 194 LVEALERDILQRNPN---IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG 270 (491)
T ss_pred HHHHHHHHHhccCCC---cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc
Confidence 333333444443332 34667889998888887754311 22245899999999999999999998876
Q ss_pred CCC
Q 039455 75 DQF 77 (216)
Q Consensus 75 ~~~ 77 (216)
..|
T Consensus 271 tTF 273 (491)
T KOG0738|consen 271 TTF 273 (491)
T ss_pred CeE
Confidence 443
No 232
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=1.1e-06 Score=66.56 Aligned_cols=60 Identities=10% Similarity=0.098 Sum_probs=39.2
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.- +.+.+..++..+. . +..+|++||+.+....+ +++.+.+
T Consensus 137 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~-~~tii~vsH~~~~~~~~-~d~i~~l 202 (211)
T cd03264 137 RRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELG--E-DRIVILSTHIVEDVESL-CNQVAVL 202 (211)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh--C-CCEEEEEcCCHHHHHHh-CCEEEEE
Confidence 3445777888899999999773 2234444554443 2 37899999998876554 3444444
No 233
>PRK09183 transposase/IS protein; Provisional
Probab=98.51 E-value=5.1e-07 Score=70.46 Aligned_cols=36 Identities=28% Similarity=0.176 Sum_probs=27.2
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 83 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~ 83 (216)
.+..++|+||+|+|||+|+..++.........+.++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 346888999999999999999988754443344444
No 234
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.51 E-value=5.1e-07 Score=74.05 Aligned_cols=57 Identities=16% Similarity=0.106 Sum_probs=36.1
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+...-.+.+.+..++-+|++|+.-+ ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus 138 q~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tvI~vTHd~~~~~~~ 200 (369)
T PRK11000 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK-RLGRTMIYVTHDQVEAMTL 200 (369)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-HhCCEEEEEeCCHHHHHHh
Confidence 3444568888888999999998732 2233333332210 1367899999998765543
No 235
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.51 E-value=5.5e-07 Score=69.56 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=38.5
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+..+ ...+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus 151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~tH~~~~~~~~-~d~v~~l 218 (241)
T cd03256 151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINR-EEGITVIVSLHQVDLAREY-ADRIVGL 218 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 34457777888889999998732 2333333333220 2367899999998776654 4444444
No 236
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.51 E-value=1.2e-06 Score=75.79 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=34.8
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
....+...+..++-++++|+.. ....+..++..+ +..||++||+.+....+
T Consensus 168 qrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~-----~~tvIiisHd~~~~~~~ 224 (552)
T TIGR03719 168 RRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY-----PGTVVAVTHDRYFLDNV 224 (552)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC-----CCeEEEEeCCHHHHHhh
Confidence 3445777788888999999773 223444444443 24799999998876654
No 237
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.51 E-value=6.1e-07 Score=68.73 Aligned_cols=68 Identities=19% Similarity=0.120 Sum_probs=44.2
Q ss_pred ccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 114 IWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 114 ~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.+..++..-.+...+..++-++|||+.-+ ...+..++..+.. ..+.++|++||+.+....+ ++..+.+
T Consensus 139 LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~-~~~~tii~~tHd~~~~~~~-ad~v~vl 212 (235)
T COG1122 139 LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKE-EGGKTIIIVTHDLELVLEY-ADRVVVL 212 (235)
T ss_pred cCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-cCCCeEEEEeCcHHHHHhh-CCEEEEE
Confidence 34455666678899999999999998732 2344444444431 2357899999998877665 3343333
No 238
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.50 E-value=1.1e-06 Score=66.25 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=38.1
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.....+.+++.-.|-+|++|+.. +...+..+...+.. .-+.++++.||+.+-...+
T Consensus 151 ~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~-~lg~T~i~VTHDl~s~~~i 212 (263)
T COG1127 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELND-ALGLTVIMVTHDLDSLLTI 212 (263)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHH-hhCCEEEEEECChHHHHhh
Confidence 34567899999999999999763 33445555544432 2468899999987554443
No 239
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=98.50 E-value=8.9e-07 Score=69.06 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=36.0
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.-.+...+..++-++++|+.. ..+.+..++..+. ..+..||++||+.+....+
T Consensus 145 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~~ 203 (256)
T TIGR03873 145 RVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELA--ATGVTVVAALHDLNLAASY 203 (256)
T ss_pred HHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHh
Confidence 445777778888999999773 2344444444443 2367899999998776543
No 240
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.50 E-value=5.3e-06 Score=66.75 Aligned_cols=150 Identities=19% Similarity=0.115 Sum_probs=82.4
Q ss_pred ccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC---------------------CceEeecc
Q 039455 27 GLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF---------------------EASSFLAN 85 (216)
Q Consensus 27 ~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~---------------------~~~~~~~~ 85 (216)
.++|-+.....+..+..........+.++||+|+||||+|..+++.+-... +.+..+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~- 80 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN- 80 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec-
Confidence 457778888888888775433334599999999999999999998765322 2222222
Q ss_pred ccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEE
Q 039455 86 VREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRII 163 (216)
Q Consensus 86 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il 163 (216)
.++........+....+....... ...++.-+++||+++.. +....+...+..-...+.++
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~-----------------~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~i 143 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSES-----------------PLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFI 143 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccC-----------------CCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEE
Confidence 111000000111111111111000 00245679999999865 33445554444335677788
Q ss_pred EEeCCc-hhhhcc-CCcceEEecCCChHHHHHH
Q 039455 164 ITTRDE-HVLKGH-GVTNIYKVRGLDYVEALQL 194 (216)
Q Consensus 164 ~tsr~~-~~~~~~-~~~~~~~l~~l~~~~~~~l 194 (216)
++|..+ .+...+ .....++++|.+.......
T Consensus 144 l~~n~~~~il~tI~SRc~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 144 LITNDPSKILPTIRSRCQRIRFKPPSRLEAIAW 176 (325)
T ss_pred EEcCChhhccchhhhcceeeecCCchHHHHHHH
Confidence 888754 233333 2346677877554444333
No 241
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=98.50 E-value=5.1e-07 Score=67.83 Aligned_cols=61 Identities=16% Similarity=0.170 Sum_probs=37.9
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEE
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYK 182 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~ 182 (216)
...-.+...+..++-++++|+.- ..+.+..++..+. ..+..+|++||+....... +.+.+.
T Consensus 131 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~sH~~~~~~~~-~~~~~~ 197 (201)
T cd03231 131 QRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHC--ARGGMVVLTTHQDLGLSEA-GARELD 197 (201)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCchhhhhc-cceeEe
Confidence 33445777888888999999873 2233444443332 3467899999987654443 444443
No 242
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=7.1e-07 Score=72.52 Aligned_cols=57 Identities=18% Similarity=0.235 Sum_probs=36.8
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+...-.+...+..++-++++|+.-+ ...+..++..+.. ..+..||++||+.+....+
T Consensus 145 q~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tiilvtH~~~~i~~~ 207 (343)
T PRK11153 145 QKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINR-ELGLTIVLITHEMDVVKRI 207 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 3344467888888999999998732 2334444433321 2367899999998776554
No 243
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=98.49 E-value=1e-06 Score=68.04 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=24.4
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|.|++|+|||||++.+++...
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3468999999999999999999998543
No 244
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.49 E-value=3.6e-07 Score=71.98 Aligned_cols=54 Identities=22% Similarity=0.213 Sum_probs=36.5
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKG 174 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~ 174 (216)
.....+...+..++-++++|+... ...+..++..+. ..+..||++||+.+.+..
T Consensus 144 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~g~tili~tH~~~~~~~ 203 (274)
T PRK13647 144 KKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLH--NQGKTVIVATHDVDLAAE 203 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHH
Confidence 334467888888999999998732 234444444433 236889999999876544
No 245
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.49 E-value=4.6e-07 Score=77.52 Aligned_cols=56 Identities=18% Similarity=0.193 Sum_probs=37.6
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+...-.+...+..++-++++|+.- ....+..++..+. ..+..||++||+.+....+
T Consensus 145 ~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiiivtHd~~~~~~~ 206 (510)
T PRK15439 145 DRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELL--AQGVGIVFISHKLPEIRQL 206 (510)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh
Confidence 344556788888899999999873 2234444444433 2467899999998765543
No 246
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.49 E-value=9e-07 Score=67.14 Aligned_cols=62 Identities=16% Similarity=0.045 Sum_probs=38.6
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.-. .+.+..++..+.. ..+..||++||+.+....+ ++..+.+
T Consensus 138 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~~-~d~i~~l 205 (214)
T cd03297 138 QRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKK-NLNIPVIFVTHDLSEAEYL-ADRIVVM 205 (214)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCcEEEEEecCHHHHHHh-cCEEEEE
Confidence 34457778888999999998732 2333344333321 1267899999998776554 3444444
No 247
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.49 E-value=6.4e-07 Score=67.16 Aligned_cols=112 Identities=13% Similarity=0.161 Sum_probs=64.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhC
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC 129 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~ 129 (216)
..++|+||+|+||||++..++..+.......++.. .... ...... ...+.. .... ..+.......+...+.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~--e~~~-E~~~~~-~~~~i~----q~~v-g~~~~~~~~~i~~aLr 72 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTI--EDPI-EFVHES-KRSLIN----QREV-GLDTLSFENALKAALR 72 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEE--cCCc-cccccC-ccceee----eccc-CCCccCHHHHHHHHhc
Confidence 57999999999999999998887754433333321 1100 000000 000000 0000 0112234556777788
Q ss_pred CceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhh
Q 039455 130 RKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLK 173 (216)
Q Consensus 130 ~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~ 173 (216)
..+-++++|++...+.+..++... ..|..++.|+|..+...
T Consensus 73 ~~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 73 QDPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred CCcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 888999999998776665544332 24566888999775443
No 248
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.49 E-value=2.2e-06 Score=70.08 Aligned_cols=39 Identities=23% Similarity=0.379 Sum_probs=32.9
Q ss_pred chhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHH-HHHHH
Q 039455 31 IASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLA-KVLYN 71 (216)
Q Consensus 31 R~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~-~~~~~ 71 (216)
|.+.+++|..||.... ...|+|+||.|+||+.|+ .++..
T Consensus 1 R~e~~~~L~~wL~e~~--~TFIvV~GPrGSGK~elV~d~~L~ 40 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENP--NTFIVVQGPRGSGKRELVMDHVLK 40 (431)
T ss_pred CchHHHHHHHHHhcCC--CeEEEEECCCCCCccHHHHHHHHh
Confidence 6678899999998753 369999999999999999 66665
No 249
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.49 E-value=6.4e-07 Score=67.79 Aligned_cols=127 Identities=18% Similarity=0.187 Sum_probs=71.2
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec---------cccccccccCch---HHHHHH--HHHHHhhc--
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA---------NVREVSVTRGLV---PLQEQL--LSEVLMER-- 110 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~---~~~~~l--~~~~~~~~-- 110 (216)
+.+.+.++.|++|.||||..+.+.+-+...-....|-. ..+.+++.+.+. ....++ +..+.+..
T Consensus 26 ~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkGm~~~ 105 (300)
T COG4152 26 PPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKA 105 (300)
T ss_pred cCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhcCCcHH
Confidence 45789999999999999999999987655434445542 122233322221 111111 11111110
Q ss_pred -------------c---ccc------cchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEE
Q 039455 111 -------------N---LII------WDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRI 162 (216)
Q Consensus 111 -------------~---~~~------~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~i 162 (216)
. ... +........+...+-++|-++|||+.- +.+.+.+....+. ..|.+|
T Consensus 106 e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk--~~GatI 183 (300)
T COG4152 106 EIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELK--EEGATI 183 (300)
T ss_pred HHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHH--hcCCEE
Confidence 0 000 001111113444555788899999663 4466666665555 578999
Q ss_pred EEEeCCchhhhcc
Q 039455 163 IITTRDEHVLKGH 175 (216)
Q Consensus 163 l~tsr~~~~~~~~ 175 (216)
|++||..+.+..+
T Consensus 184 ifSsH~Me~vEeL 196 (300)
T COG4152 184 IFSSHRMEHVEEL 196 (300)
T ss_pred EEecchHHHHHHH
Confidence 9999987554443
No 250
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.49 E-value=5.6e-06 Score=65.50 Aligned_cols=174 Identities=18% Similarity=0.133 Sum_probs=96.6
Q ss_pred ccccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc--cccCchHHHH
Q 039455 25 VDGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS--VTRGLVPLQE 100 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 100 (216)
--.|+|-.++.+.+..++..+ ......+.++||.|+|||+|......+.++.-+....+. ....- ....+..+..
T Consensus 23 ~~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~-Lng~~~~dk~al~~I~r 101 (408)
T KOG2228|consen 23 HINLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVR-LNGELQTDKIALKGITR 101 (408)
T ss_pred CcceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEE-ECccchhhHHHHHHHHH
Confidence 345899999999999988754 344578899999999999999998877433333333332 11100 0112223333
Q ss_pred HHHHHHHhhccccccchhhhHHHHHHHhC------CceEEEEEeCCCCHH------HHHHhhcCCC-CCCCCcEEEEEeC
Q 039455 101 QLLSEVLMERNLIIWDVHKGINLIRWRLC------RKRVLVVLDDVDQLE------QLQALAGNHD-WFGFGSRIIITTR 167 (216)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~------~~~~llvlDd~~~~~------~~~~l~~~~~-~~~~~~~il~tsr 167 (216)
++..++.... ....+.......+...+. +.++++|+|++|..- -+-.++..-. ...+=|-|-+|||
T Consensus 102 ql~~e~~~~~-k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttr 180 (408)
T KOG2228|consen 102 QLALELNRIV-KSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTR 180 (408)
T ss_pred HHHHHHhhhh-eeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeecc
Confidence 3333322221 112233333444444443 236888999886331 1222222111 1124456678998
Q ss_pred Cch-------hhhccCCcceEEecCCChHHHHHHHhhhhc
Q 039455 168 DEH-------VLKGHGVTNIYKVRGLDYVEALQLFHLKVS 200 (216)
Q Consensus 168 ~~~-------~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~ 200 (216)
-.- +-+++.....+-+++++-++...++++-..
T Consensus 181 ld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll~ 220 (408)
T KOG2228|consen 181 LDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLLS 220 (408)
T ss_pred ccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHhc
Confidence 642 233333334566777888899999987663
No 251
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=98.49 E-value=1e-06 Score=68.77 Aligned_cols=61 Identities=8% Similarity=0.121 Sum_probs=39.6
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
....+.+.+..++-++++|+.. ....+..++..+. ..+..||++||+.+....+ +++.+.+
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~--~~g~tiiivsH~~~~~~~~-~d~i~~l 225 (257)
T PRK10619 159 QRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLA--EEGKTMVVVTHEMGFARHV-SSHVIFL 225 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence 3445777888888999999773 2233444444333 3478899999998876654 3444444
No 252
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=98.48 E-value=1.2e-06 Score=67.68 Aligned_cols=60 Identities=13% Similarity=0.136 Sum_probs=38.2
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+.. ....+..++..+. ..+..||++||+.+....+ ++..+.+
T Consensus 144 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sH~~~~~~~~-~d~i~~l 209 (240)
T PRK09493 144 RVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLA--EEGMTMVIVTHEIGFAEKV-ASRLIFI 209 (240)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 345677777888899999773 2234444444432 2367899999998876554 3444444
No 253
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.48 E-value=1.9e-06 Score=67.68 Aligned_cols=60 Identities=8% Similarity=-0.011 Sum_probs=39.8
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
.-.+...+..++-++++|+.-+ ...+..++..+. .+..||++||+.+....+ ++..+.+.
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~---~~~tiiivtH~~~~~~~~-~d~i~~l~ 227 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELK---KNFTIVIVTHNMQQAVRV-SDMTAFFN 227 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHh-cCEEEEEe
Confidence 3456777778889999998732 233444444432 246799999998776665 45666655
No 254
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.48 E-value=5.9e-06 Score=73.66 Aligned_cols=50 Identities=24% Similarity=0.300 Sum_probs=38.4
Q ss_pred ccccccchhHHHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 25 VDGLVGIASRMEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
....+|.+..++.+...+... ..-..++.++||+|+|||.||+.++..+.
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 346789999999888776521 11234689999999999999999998763
No 255
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.48 E-value=6.2e-06 Score=74.52 Aligned_cols=49 Identities=22% Similarity=0.313 Sum_probs=38.0
Q ss_pred cccccchhHHHHHHHHHhcC-----C-CC-eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 26 DGLVGIASRMEKMNGYLEAG-----L-DD-VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~-----~-~~-~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..++|.+..++.+...+... . +. ..++.++||+|+|||+||+.++..+.
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 45889999999888876521 1 11 24789999999999999999998664
No 256
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=98.48 E-value=7.6e-07 Score=72.62 Aligned_cols=57 Identities=12% Similarity=0.036 Sum_probs=36.1
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+...-.+.+.+..++-++++|+.-+ ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus 133 q~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tii~vTHd~~~~~~~ 195 (352)
T PRK11144 133 EKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAR-EINIPILYVSHSLDEILRL 195 (352)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCeEEEEecCHHHHHHh
Confidence 3444567888888999999998732 2333333333221 1357899999998765443
No 257
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=1.5e-06 Score=74.20 Aligned_cols=153 Identities=22% Similarity=0.234 Sum_probs=89.2
Q ss_pred cccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccC
Q 039455 26 DGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG 94 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (216)
....|-+...+.+...+.. .-.....+.++||+|+|||.||+.++.....+|-.+..-.
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~---------- 311 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE---------- 311 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH----------
Confidence 3445555555555554331 1234568999999999999999999986554432222211
Q ss_pred chHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCCCCC--CCC
Q 039455 95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNHDWF--GFG 159 (216)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~~~--~~~ 159 (216)
++.... ..+.......+..+....+++|++|++++. ..+..++..+... ..+
T Consensus 312 -------l~sk~v------Gesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~ 378 (494)
T COG0464 312 -------LLSKWV------GESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEG 378 (494)
T ss_pred -------Hhcccc------chHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCc
Confidence 111000 001112233344455678999999998643 2234444443211 233
Q ss_pred cEEEEEeCCchhhhc---c--CCcceEEecCCChHHHHHHHhhhhcC
Q 039455 160 SRIIITTRDEHVLKG---H--GVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 160 ~~il~tsr~~~~~~~---~--~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
..+|-+|..+..... . .-+..+.+++-+.++..+.|..+...
T Consensus 379 v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 379 VLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred eEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 445556655544332 1 34678999999999999999988753
No 258
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=98.47 E-value=1.3e-06 Score=66.25 Aligned_cols=28 Identities=36% Similarity=0.404 Sum_probs=24.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+.+.+++|.|++|+|||||++.+++...
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3468999999999999999999998554
No 259
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.3e-06 Score=67.04 Aligned_cols=62 Identities=10% Similarity=0.040 Sum_probs=37.8
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+... ...+..++..+.. ..+..+|++||+.+....+ +++.+.+
T Consensus 136 qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~-~~~~tiii~sH~~~~~~~~-~d~i~~l 203 (232)
T PRK10771 136 QRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQ-ERQLTLLMVSHSLEDAARI-APRSLVV 203 (232)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHh-CCEEEEE
Confidence 34456777788889999998732 2333333333210 2367899999999876554 3344444
No 260
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=98.47 E-value=1e-06 Score=67.89 Aligned_cols=60 Identities=18% Similarity=0.210 Sum_probs=38.3
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...+...+..++-++++|+..+ ...+..++..+. ..+..||++||+.+....+ ++..+.+
T Consensus 151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~vsH~~~~~~~~-~d~i~~l 216 (236)
T cd03219 151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELR--ERGITVLLVEHDMDVVMSL-ADRVTVL 216 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHHHh-CCEEEEE
Confidence 3356777778889999998732 233334443332 2467899999998876654 4444444
No 261
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.47 E-value=1.2e-06 Score=67.19 Aligned_cols=62 Identities=10% Similarity=0.116 Sum_probs=39.1
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
..-.+...+..++-++++|+.- +.+.+..++..+.. ..+..||++||+.+.... +++.+.+.
T Consensus 153 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~--~d~i~~l~ 220 (228)
T PRK10584 153 QRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNR-EHGTTLILVTHDLQLAAR--CDRRLRLV 220 (228)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHh--CCEEEEEE
Confidence 3445777778888999999873 22334444433321 236789999999887643 55655554
No 262
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=98.47 E-value=1.2e-06 Score=68.26 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=38.8
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.- +...+..++..+.. ..+..||++||+.+....+ +++.+.+
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~~tii~~sH~~~~~~~~-~d~i~~l 227 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN-EHNVTVLLIEHDMKLVMGI-SDRIYVV 227 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 3445777888889999999873 22334444433321 1367899999998776554 3444443
No 263
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.47 E-value=1.6e-06 Score=67.68 Aligned_cols=63 Identities=11% Similarity=0.059 Sum_probs=40.4
Q ss_pred ccccchhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 112 LIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 112 ~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+.+..+....++.+.+.-.|-+|.||+.-.. .+++..+..+.. ..+...+++||+.+.+..+
T Consensus 136 ~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~-~~~~ttvfVTHD~eea~~l 204 (345)
T COG1118 136 AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHD-RLGVTTVFVTHDQEEALEL 204 (345)
T ss_pred hhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHH-hhCceEEEEeCCHHHHHhh
Confidence 34455566677899999999999999987322 223222222110 2367899999998765554
No 264
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.47 E-value=1.1e-06 Score=77.02 Aligned_cols=58 Identities=17% Similarity=0.290 Sum_probs=38.9
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
....+...+..++-+|++|+.- +...+..++..+. ..||++||+..++..+ ++..+.+
T Consensus 163 qRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-----~tvlivsHd~~~l~~~-~d~i~~L 226 (635)
T PRK11147 163 RKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-----GSIIFISHDRSFIRNM-ATRIVDL 226 (635)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-----CEEEEEeCCHHHHHHh-cCeEEEE
Confidence 3446778888889999999773 2344555555442 4799999999887665 3344333
No 265
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.47 E-value=9.5e-07 Score=71.61 Aligned_cols=57 Identities=18% Similarity=0.232 Sum_probs=37.7
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+.....+.+.+..++-++++|+.-+ ...+..++..+.. ..+.+||++||+.+.+..+
T Consensus 145 qkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~-~~g~tiiliTH~~~~v~~~ 207 (343)
T TIGR02314 145 QKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINR-RLGLTILLITHEMDVVKRI 207 (343)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 3445568888889999999998732 2333344433321 2367899999998876554
No 266
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.47 E-value=6.4e-06 Score=74.56 Aligned_cols=51 Identities=27% Similarity=0.322 Sum_probs=40.0
Q ss_pred ccccccchhHHHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 25 VDGLVGIASRMEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
...++|.+..++.+...+... ......+.++||+|+|||++|+.++..+..
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 356899999999998877531 112357889999999999999999987643
No 267
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.46 E-value=1.6e-06 Score=67.27 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=24.7
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+.+++|.|++|+|||||++.+++...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4568999999999999999999998654
No 268
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.46 E-value=9.3e-07 Score=62.35 Aligned_cols=46 Identities=28% Similarity=0.302 Sum_probs=34.2
Q ss_pred ccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 29 VGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 29 vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
||+...++++.+-+..-......|.|+|++|+||+++|+.+.....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~ 46 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSG 46 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcC
Confidence 5788888888887664334457889999999999999998877543
No 269
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.46 E-value=9.3e-07 Score=66.37 Aligned_cols=55 Identities=18% Similarity=0.155 Sum_probs=36.6
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...-.+...+..++-++++|+... .+.+..++..+. ..+..||++||+....+..
T Consensus 133 ~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~--~~~~tiii~sh~~~~~~~~ 193 (200)
T PRK13540 133 KRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHR--AKGGAVLLTSHQDLPLNKA 193 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHH--HcCCEEEEEeCCchhcccc
Confidence 334457778888899999998732 233444443332 2467899999998777664
No 270
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=98.46 E-value=9e-07 Score=70.76 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=35.3
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKG 174 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~ 174 (216)
....+...+..++-+|++|+.-. ...+..++..+. ..+..||++||+.+.+..
T Consensus 172 qrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 172 RRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLN--KQGKTIILVTHDLDNVLE 230 (305)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEeeCHHHHHH
Confidence 34457888888999999998732 233344443332 247889999999876544
No 271
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=98.46 E-value=4.3e-07 Score=67.60 Aligned_cols=28 Identities=29% Similarity=0.444 Sum_probs=24.2
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+.+++|.|++|+|||||++.+++...
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4568999999999999999999998543
No 272
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.46 E-value=1.6e-06 Score=66.05 Aligned_cols=62 Identities=15% Similarity=0.196 Sum_probs=38.6
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
..-.+...+..++-++++|+.-+ ...+..++..+.. ..+..||++||+.+.... ++..+.+.
T Consensus 148 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~tH~~~~~~~--~d~v~~l~ 215 (221)
T TIGR02211 148 QRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNR-ELNTSFLVVTHDLELAKK--LDRVLEMK 215 (221)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHhh--cCEEEEEe
Confidence 34457777788888999998732 2334344433220 235789999999877654 35555553
No 273
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.46 E-value=5.3e-06 Score=60.13 Aligned_cols=133 Identities=19% Similarity=0.188 Sum_probs=70.4
Q ss_pred cchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC--------------------CCceEeecccccc
Q 039455 30 GIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--------------------FEASSFLANVREV 89 (216)
Q Consensus 30 gR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~--------------------~~~~~~~~~~~~~ 89 (216)
|.+...+.|...+..+ .-...+.++|+.|+||+++|..++..+-.. .+...|+.....
T Consensus 1 gq~~~~~~L~~~~~~~-~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~- 78 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK- 78 (162)
T ss_dssp S-HHHHHHHHHHHHCT-C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-
T ss_pred CcHHHHHHHHHHHHcC-CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-
Confidence 5566677777777653 334678999999999999999999865322 223333320000
Q ss_pred ccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHh-----CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEE
Q 039455 90 SVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL-----CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRI 162 (216)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~i 162 (216)
.. ....+... .+...+ .++.-++|||+++.. +....++..+..-..++.+
T Consensus 79 --~~--------------------~i~i~~ir-~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~f 135 (162)
T PF13177_consen 79 --KK--------------------SIKIDQIR-EIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYF 135 (162)
T ss_dssp --SS--------------------SBSHHHHH-HHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEE
T ss_pred --cc--------------------hhhHHHHH-HHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEE
Confidence 00 00111111 222222 234669999999854 4455555444333467778
Q ss_pred EEEeCCch-hhhcc-CCcceEEecCCC
Q 039455 163 IITTRDEH-VLKGH-GVTNIYKVRGLD 187 (216)
Q Consensus 163 l~tsr~~~-~~~~~-~~~~~~~l~~l~ 187 (216)
|++|++.. +...+ ..-..+.++|+|
T Consensus 136 iL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 136 ILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp EEEES-GGGS-HHHHTTSEEEEE----
T ss_pred EEEECChHHChHHHHhhceEEecCCCC
Confidence 88887654 33332 234677777764
No 274
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.46 E-value=1.1e-06 Score=74.37 Aligned_cols=126 Identities=11% Similarity=0.094 Sum_probs=67.4
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccc-------ccccccCchHH------------------HHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVR-------EVSVTRGLVPL------------------QEQ 101 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~------------------~~~ 101 (216)
..+..++|.|++|+|||||++.+++..... .+.+++.... .........+. ...
T Consensus 48 ~~GEivgIiGpNGSGKSTLLkiLaGLl~P~-sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~e 126 (549)
T PRK13545 48 PEGEIVGIIGLNGSGKSTLSNLIAGVTMPN-KGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEIIPE 126 (549)
T ss_pred eCCCEEEEEcCCCCCHHHHHHHHhCCCCCC-ceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHH
Confidence 356899999999999999999999865432 2222221100 00000000000 001
Q ss_pred HHHHHHh-----hccccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCch
Q 039455 102 LLSEVLM-----ERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEH 170 (216)
Q Consensus 102 l~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~ 170 (216)
++..+.. ......+..+...-.+...+...+-++++|+.-+ ...+..++..+. ..+..||++||+..
T Consensus 127 lLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~--~~G~TIIIVSHdl~ 204 (549)
T PRK13545 127 IIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFK--EQGKTIFFISHSLS 204 (549)
T ss_pred HHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEECCHH
Confidence 1111100 0001112223334457888888999999998742 123333333332 34678999999987
Q ss_pred hhhcc
Q 039455 171 VLKGH 175 (216)
Q Consensus 171 ~~~~~ 175 (216)
.+..+
T Consensus 205 ~i~~l 209 (549)
T PRK13545 205 QVKSF 209 (549)
T ss_pred HHHHh
Confidence 66554
No 275
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.46 E-value=1.5e-06 Score=76.21 Aligned_cols=58 Identities=17% Similarity=0.171 Sum_probs=38.9
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
....+...+..++-+|+||+.- +...+..++..+ +..||++||+.+++..+ ++..+.+
T Consensus 156 qRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~-----~~tviivsHd~~~l~~~-~d~i~~L 219 (638)
T PRK10636 156 MRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY-----QGTLILISHDRDFLDPI-VDKIIHI 219 (638)
T ss_pred HHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC-----CCeEEEEeCCHHHHHHh-cCEEEEE
Confidence 3445777888889999999773 334455555443 35799999999887765 3444444
No 276
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=98.46 E-value=1.1e-06 Score=71.85 Aligned_cols=58 Identities=10% Similarity=-0.064 Sum_probs=37.0
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+...-.+.+.+..++-++++|+.-+ ...+...+..+.....+..+|++||+.+.+..+
T Consensus 142 q~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l 205 (362)
T TIGR03258 142 MQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTL 205 (362)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHh
Confidence 3444568888889999999998732 233444443332111267899999998765443
No 277
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=1.8e-06 Score=66.41 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=40.9
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+...-.+...+..++-++++|+.. ..+.+..++..+. . +..||++||+.+.... +++.+.+
T Consensus 142 ~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~-~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 142 EKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS--K-GRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--C-CCEEEEEcCCHHHHHh--CCEEEEE
Confidence 334446788888999999999873 2234445554443 3 6789999999887754 5555555
No 278
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=2e-06 Score=74.05 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=35.9
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+.....+...+..++-++++|+..+ ...+..++.. .+..||++||+.+....+
T Consensus 160 q~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~-----~~~tiiivsHd~~~~~~~ 218 (530)
T PRK15064 160 WKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE-----RNSTMIIISHDRHFLNSV 218 (530)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh-----CCCeEEEEeCCHHHHHhh
Confidence 3344467778888899999998732 2334444432 357899999998876554
No 279
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=98.45 E-value=1.1e-06 Score=67.23 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=39.4
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
..-.+...+..++-++++|+... .+.+..++..+. .+..+|++||+.+... . ++..+.+.
T Consensus 157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~-~-~d~i~~l~ 222 (226)
T cd03248 157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWP---ERRTVLVIAHRLSTVE-R-ADQILVLD 222 (226)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc---CCCEEEEEECCHHHHH-h-CCEEEEec
Confidence 34457777788899999998732 233444444333 2468999999988774 3 56666553
No 280
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=9.6e-07 Score=69.47 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=35.6
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
..-.+...+..++-++++|+..+ ...+..++..+. ..+..||++||+.+....+
T Consensus 143 qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~g~tii~vtH~~~~~~~~ 202 (271)
T PRK13638 143 KRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIV--AQGNHVIISSHDIDLIYEI 202 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh
Confidence 34457777888899999998732 233444444332 2367899999998766543
No 281
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.45 E-value=2.3e-07 Score=70.30 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
.+.++|+|++|+|||||++.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 37899999999999999999984
No 282
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.45 E-value=1.7e-06 Score=67.27 Aligned_cols=59 Identities=10% Similarity=0.017 Sum_probs=37.7
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+.- ..+.+..++..+. .+..+|++||+.+....+ ++..+.+
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~---~~~tiii~sH~~~~~~~~-~d~i~~l 218 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELK---KDMTIVLVTHFPQQAARI-SDYVAFL 218 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence 445677777888999999773 2234444444432 257899999998765543 3444444
No 283
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.45 E-value=1.3e-06 Score=67.12 Aligned_cols=61 Identities=15% Similarity=0.094 Sum_probs=37.9
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+.. ....+..++..+.. ..+.+||++||+......+ +++.+.+
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~~~tiii~sh~~~~~~~~-~d~i~~l 204 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQK-ELGITFVFVTHDQEEALTM-SDRIAVM 204 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHh-cCEEEEE
Confidence 345777788888999999873 22334444433321 1367899999998765443 3344433
No 284
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.45 E-value=1.3e-06 Score=69.36 Aligned_cols=54 Identities=15% Similarity=0.081 Sum_probs=36.0
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG 174 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~ 174 (216)
.....+...+..++-++++|+.- ....+..++..+. ..+..||++||+.+.+..
T Consensus 150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~--~~g~til~vtHd~~~~~~ 209 (288)
T PRK13643 150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIH--QSGQTVVLVTHLMDDVAD 209 (288)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHHH
Confidence 33446778888888999999773 2233444443333 246789999999876544
No 285
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=98.44 E-value=1.4e-06 Score=68.40 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=35.9
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...-.+...+..++-++++|+... ...+..++..+.. ..+..||++||+.+....+
T Consensus 153 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~-~~~~tiii~sH~~~~i~~~ 214 (265)
T PRK10575 153 RQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQ-ERGLTVIAVLHDINMAARY 214 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 334457778888999999998732 2333344433321 2367899999998765543
No 286
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.44 E-value=1.4e-06 Score=69.51 Aligned_cols=55 Identities=24% Similarity=0.231 Sum_probs=37.9
Q ss_pred cchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 30 GIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 30 gR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
+|....+....++..- ......+.|+|+.|+|||+|+..+++.+......+.++.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4444445555565532 224578999999999999999999998765544455553
No 287
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=98.44 E-value=1.4e-06 Score=76.39 Aligned_cols=124 Identities=17% Similarity=0.203 Sum_probs=67.1
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCce--------Eeecccc--ccccccCchHH------------HHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS--------SFLANVR--EVSVTRGLVPL------------QEQLLS 104 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~--------~~~~~~~--~~~~~~~~~~~------------~~~l~~ 104 (216)
..+..++|+|++|+|||||++.+++.....-..+ .|+.-.. ........... ...++.
T Consensus 336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~ 415 (638)
T PRK10636 336 VPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLG 415 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHH
Confidence 3468999999999999999999998654321111 1111000 00000011100 011111
Q ss_pred HHHhh------ccccccchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhh
Q 039455 105 EVLME------RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVL 172 (216)
Q Consensus 105 ~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~ 172 (216)
.+.-. .....+..+...-.+...+..++-+|+||+.- +...+..++..+ . ..||++||+.+++
T Consensus 416 ~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~----~-gtvi~vSHd~~~~ 490 (638)
T PRK10636 416 GFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF----E-GALVVVSHDRHLL 490 (638)
T ss_pred HcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----C-CeEEEEeCCHHHH
Confidence 11000 00111222333445777888899999999773 334555555554 2 3799999999887
Q ss_pred hcc
Q 039455 173 KGH 175 (216)
Q Consensus 173 ~~~ 175 (216)
..+
T Consensus 491 ~~~ 493 (638)
T PRK10636 491 RST 493 (638)
T ss_pred HHh
Confidence 665
No 288
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=98.44 E-value=2.1e-06 Score=66.56 Aligned_cols=55 Identities=22% Similarity=0.122 Sum_probs=36.7
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...-.+...+..++-++++|+.- +.+.+..++..+. ..+..||++||+.......
T Consensus 151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~--~~~~tiii~sH~~~~~~~~ 211 (248)
T PRK09580 151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLR--DGKRSFIIVTHYQRILDYI 211 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHhh
Confidence 34445777888889999999873 2234444443332 3467899999998776653
No 289
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.44 E-value=1.4e-06 Score=67.34 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=24.1
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|.|++|+|||||++.+++...
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3467999999999999999999998543
No 290
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.44 E-value=8.3e-06 Score=70.05 Aligned_cols=170 Identities=11% Similarity=0.119 Sum_probs=101.6
Q ss_pred cccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcC-----CCCceEeeccccccccccCc
Q 039455 24 AVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKD-----QFEASSFLANVREVSVTRGL 95 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 95 (216)
.+..+-+|+.+...|..++... ...+.++.|+|.+|+|||.++..+...++. ..+...|+. .- --.....
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-IN-gm~l~~~ 471 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-IN-GLRLASP 471 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Ec-ceeecCH
Confidence 5667889999999999987732 245669999999999999999999885441 122222221 00 0112234
Q ss_pred hHHHHHHHHHHHhhccccccchhhhHHHHHHHhC-----CceEEEEEeCCCCH-----HHHHHhhcCCCCCCCCcEEEEE
Q 039455 96 VPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC-----RKRVLVVLDDVDQL-----EQLQALAGNHDWFGFGSRIIIT 165 (216)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~llvlDd~~~~-----~~~~~l~~~~~~~~~~~~il~t 165 (216)
..+...+... .+.....+....+.+...+. .+++++++|++|.+ +-+..++.-.. .++++++|.
T Consensus 472 ~~~Y~~I~~~----lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt--~~~sKLvvi 545 (767)
T KOG1514|consen 472 REIYEKIWEA----LSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPT--LKNSKLVVI 545 (767)
T ss_pred HHHHHHHHHh----cccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCc--CCCCceEEE
Confidence 4444444444 33444455556666665554 24789999999754 22333332222 244544333
Q ss_pred e--CCchhhh---------ccCCcceEEecCCChHHHHHHHhhhhcCC
Q 039455 166 T--RDEHVLK---------GHGVTNIYKVRGLDYVEALQLFHLKVSKG 202 (216)
Q Consensus 166 s--r~~~~~~---------~~~~~~~~~l~~l~~~~~~~ll~~~~~~~ 202 (216)
+ ...++.. .+ ....+.+.|.+-+|..+++..+.-+.
T Consensus 546 ~IaNTmdlPEr~l~nrvsSRl-g~tRi~F~pYth~qLq~Ii~~RL~~~ 592 (767)
T KOG1514|consen 546 AIANTMDLPERLLMNRVSSRL-GLTRICFQPYTHEQLQEIISARLKGL 592 (767)
T ss_pred EecccccCHHHHhccchhhhc-cceeeecCCCCHHHHHHHHHHhhcch
Confidence 2 2222222 22 45678899999988888887766443
No 291
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.44 E-value=2.8e-06 Score=74.52 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=85.7
Q ss_pred cccccchhHHHHHHHHHhcC----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCc
Q 039455 26 DGLVGIASRMEKMNGYLEAG----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGL 95 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (216)
..+.|.+...+++.+.+... ..-.+.++++||+|+|||++++.++......| +.++ ...
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~~------- 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSD------- 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hHH-------
Confidence 45667776666665544311 11234699999999999999999988764322 1111 000
Q ss_pred hHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----------------HHHHhhcCCCCC--C
Q 039455 96 VPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----------------QLQALAGNHDWF--G 157 (216)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~~--~ 157 (216)
+.... .. .........+.......+++|+|||++... .+..++..+... .
T Consensus 221 --~~~~~-----~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~ 288 (644)
T PRK10733 221 --FVEMF-----VG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 288 (644)
T ss_pred --hHHhh-----hc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCC
Confidence 10000 00 011122233444444578999999986541 123333222211 2
Q ss_pred CCcEEEEEeCCchhhhcc-----CCcceEEecCCChHHHHHHHhhhhcC
Q 039455 158 FGSRIIITTRDEHVLKGH-----GVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 158 ~~~~il~tsr~~~~~~~~-----~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
.+..+|.||..++.+... ..+..+.++..+.++..++++.+...
T Consensus 289 ~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 289 EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 344556677765533321 24678899999999999999877644
No 292
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.44 E-value=2.1e-06 Score=65.99 Aligned_cols=145 Identities=13% Similarity=0.073 Sum_probs=78.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC---------------------------C
Q 039455 26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF---------------------------E 78 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~---------------------------~ 78 (216)
..|+-|....-.-..-++..-+.+.++++.|++|.||||+++.+-+.+.... .
T Consensus 27 ~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk 106 (325)
T COG4586 27 NHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQK 106 (325)
T ss_pred HhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhh
Confidence 4566666644443333444446678999999999999999999987543211 1
Q ss_pred ceEeeccccccccccCch--------HHHHHH---HHHHHhhc---cc---cccchhhhHHHHHHHhCCceEEEEEeCC-
Q 039455 79 ASSFLANVREVSVTRGLV--------PLQEQL---LSEVLMER---NL---IIWDVHKGINLIRWRLCRKRVLVVLDDV- 140 (216)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~--------~~~~~l---~~~~~~~~---~~---~~~~~~~~~~~l~~~l~~~~~llvlDd~- 140 (216)
...||+..... ...+. ....+- +.++..-. .. ..+..+.....+...+-..+-+|+||+.
T Consensus 107 ~ql~Wdlp~~d--s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpT 184 (325)
T COG4586 107 LQLWWDLPALD--SLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPT 184 (325)
T ss_pred heeeeechhhh--hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCc
Confidence 23444321100 00000 000000 11111111 01 1123344455577777788999999965
Q ss_pred ---C--CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhh
Q 039455 141 ---D--QLEQLQALAGNHDWFGFGSRIIITTRDEHVLK 173 (216)
Q Consensus 141 ---~--~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~ 173 (216)
| .-..+..++..++ ...+++|++|||+-.-..
T Consensus 185 vgLDV~aq~~ir~Flke~n-~~~~aTVllTTH~~~di~ 221 (325)
T COG4586 185 VGLDVNAQANIREFLKEYN-EERQATVLLTTHIFDDIA 221 (325)
T ss_pred cCcchhHHHHHHHHHHHHH-HhhCceEEEEecchhhHH
Confidence 2 3344556655443 135789999999864433
No 293
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.43 E-value=1e-06 Score=67.70 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=40.2
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...-.+...+..++-++++|+.- ..+.+..++..+. .+..||++||+...... +++.+.+
T Consensus 144 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~v~~l 209 (234)
T cd03251 144 RQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLM---KNRTTFVIAHRLSTIEN--ADRIVVL 209 (234)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHhh--CCEEEEe
Confidence 34446778888889999999773 2244445554443 35789999999877654 5555555
No 294
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=98.43 E-value=3.1e-06 Score=63.83 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=39.5
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
...-.+...+..++-++++|+... .+.+..++..+. .+..+|++||+.+.... ++..+.+.
T Consensus 131 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tiii~th~~~~~~~--~d~v~~l~ 197 (207)
T cd03369 131 RQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF---TNSTILTIAHRLRTIID--YDKILVMD 197 (207)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc---CCCEEEEEeCCHHHHhh--CCEEEEEE
Confidence 334457777888899999998742 233444444332 36789999999877643 45555554
No 295
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.43 E-value=1.7e-06 Score=66.71 Aligned_cols=61 Identities=13% Similarity=0.071 Sum_probs=38.7
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
.-.+...+..++-++++|+... .+.+..++..+.. ..+..+|++||+.+.... +++.+.+.
T Consensus 140 rl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tiii~sH~~~~~~~--~d~i~~l~ 206 (236)
T TIGR03864 140 RVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCR-DQGLSVLWATHLVDEIEA--DDRLVVLH 206 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEecChhhHhh--CCEEEEEe
Confidence 3357778888899999998732 2334344433321 136789999999887653 55555553
No 296
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.43 E-value=1.1e-06 Score=72.82 Aligned_cols=55 Identities=22% Similarity=0.230 Sum_probs=42.4
Q ss_pred cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC--CCceEeec
Q 039455 26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLA 84 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~--~~~~~~~~ 84 (216)
.+.++.++.++.+...+..+ ..++++|++|+|||++|+.++..+... +..+.|+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~----~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK----KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC----CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 45778888898888887643 688999999999999999999876532 33445554
No 297
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=98.43 E-value=1.7e-06 Score=65.14 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=34.2
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhh
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLK 173 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~ 173 (216)
.-.+...+..++-++++|+..+ .+.+..++..+. ..+..+|++||+.....
T Consensus 142 r~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~ 198 (206)
T TIGR03608 142 RVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELN--DEGKTIIIVTHDPEVAK 198 (206)
T ss_pred HHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHh
Confidence 3457778888999999998732 233444443332 24678999999987654
No 298
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.43 E-value=1.8e-06 Score=66.72 Aligned_cols=55 Identities=16% Similarity=0.104 Sum_probs=35.0
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
..-.+...+..++-++++|+..+ .+.+..++..+.. ..+..||++||+.+....+
T Consensus 138 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tii~~sH~~~~~~~~ 198 (241)
T PRK14250 138 QRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKN-KMNLTVIWITHNMEQAKRI 198 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEeccHHHHHHh
Confidence 34457777788889999998732 2333333333321 1367899999998775543
No 299
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=98.43 E-value=1.6e-06 Score=64.79 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=24.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|.|++|+|||||++.+++...
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3457999999999999999999998543
No 300
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.43 E-value=2.1e-06 Score=66.36 Aligned_cols=63 Identities=17% Similarity=0.099 Sum_probs=39.9
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...-.+...+..++-++++|+.- ..+.+..++..+. ..+..||++||+.+....+.++..+.+
T Consensus 150 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tvi~vsH~~~~~~~~~~d~i~~l 218 (243)
T TIGR01978 150 KKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLR--EPDRSFLIITHYQRLLNYIKPDYVHVL 218 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCcEEEEEEecHHHHHhhcCCeEEEE
Confidence 33445777888889999999873 2234444444433 246789999999887665423343333
No 301
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=98.43 E-value=1.7e-06 Score=67.25 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=24.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|.|++|+|||||++.+++...
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3468999999999999999999998543
No 302
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=5.6e-07 Score=73.40 Aligned_cols=58 Identities=9% Similarity=0.027 Sum_probs=36.9
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+.....+.+.+..++-++++|+.-+ .+.+...+..+.. ..+..+|++||+...+..+
T Consensus 138 Gq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tii~vTHd~~ea~~l 201 (356)
T PRK11650 138 GQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHR-RLKTTSLYVTHDQVEAMTL 201 (356)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 34445568888899999999998732 2333333332210 2367899999998655443
No 303
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=98.42 E-value=2.4e-06 Score=66.65 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=35.5
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
..-.+...+..++-++++|+.. ..+.+..++..+. ..+..+|++||+......+
T Consensus 145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~--~~~~tiii~tH~~~~~~~~ 204 (255)
T PRK11231 145 QRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELN--TQGKTVVTVLHDLNQASRY 204 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEECCHHHHHHh
Confidence 3445777888889999999873 2233444443332 2367899999998765443
No 304
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=98.42 E-value=1.9e-06 Score=67.82 Aligned_cols=55 Identities=11% Similarity=0.184 Sum_probs=36.1
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...-.+...+..++-++++|+.- ....+..++..+. ..+..+|++||+.+....+
T Consensus 148 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~--~~g~tviivsH~~~~~~~~ 208 (272)
T PRK15056 148 KKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELR--DEGKTMLVSTHNLGSVTEF 208 (272)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHh
Confidence 33445777888889999999873 2234444444433 2467899999998665443
No 305
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=98.42 E-value=3.9e-06 Score=63.87 Aligned_cols=61 Identities=20% Similarity=0.233 Sum_probs=40.0
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
...-.+...+..++-++++|+.- ....+..++..+. . +..||++||+.+... + +++.+.+.
T Consensus 146 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~-~~tii~~sH~~~~~~-~-~d~v~~l~ 212 (220)
T cd03245 146 RQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLL--G-DKTLIIITHRPSLLD-L-VDRIIVMD 212 (220)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--C-CCEEEEEeCCHHHHH-h-CCEEEEEe
Confidence 33445777777888999999773 2344555555443 2 368999999988763 3 55655553
No 306
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.42 E-value=1.7e-06 Score=66.45 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.7
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
.+.+++|.|++|+|||||++.+++....
T Consensus 11 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 11 RGEVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4679999999999999999999987653
No 307
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.42 E-value=3.4e-06 Score=65.19 Aligned_cols=60 Identities=13% Similarity=0.123 Sum_probs=38.4
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.-+ ...+..++..+. .+..||++||+.+....+ +++.+.+
T Consensus 150 qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~---~~~tii~~sH~~~~~~~~-~d~i~~l 215 (242)
T TIGR03411 150 QWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLA---GKHSVVVVEHDMEFVRSI-ADKVTVL 215 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHh---cCCEEEEEECCHHHHHHh-CCEEEEE
Confidence 34457778888889999998732 233444444433 246899999998776554 3444443
No 308
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=1.5e-06 Score=68.55 Aligned_cols=55 Identities=16% Similarity=0.219 Sum_probs=35.6
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKG 174 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~ 174 (216)
.....+...+..++-++++|+... ...+..++..+.. ..+..||++||+.+....
T Consensus 143 ~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tvli~tH~~~~~~~ 203 (277)
T PRK13652 143 KKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPE-TYGMTVIFSTHQLDLVPE 203 (277)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHH
Confidence 334457888888999999998742 2334444433321 126789999999876544
No 309
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.41 E-value=2.5e-06 Score=66.30 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=35.5
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
....+.+.+..++-++++|+... ...+..++..+. .+..||++||+.+....+
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~~tilivsh~~~~~~~~ 212 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK---QNYTIAIVTHNMQQAARA 212 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHhh
Confidence 34457777888899999998732 233444444432 357899999998776654
No 310
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.41 E-value=3.7e-07 Score=75.42 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=38.6
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+.....+.+.+..++-+|+||+.- ....+..++..+. ..+..||++||+.+.+..+
T Consensus 144 erQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~--~~g~TIIivsHdl~~~~~~ 205 (402)
T PRK09536 144 ERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV--DDGKTAVAAIHDLDLAARY 205 (402)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHh
Confidence 344556888888999999999773 2234555555444 2467899999998776554
No 311
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.41 E-value=1.7e-06 Score=68.67 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=36.6
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
....+...+..++-+|++|+.. ....+..++..+. ..+..||++||+.+.+..+
T Consensus 152 qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~--~~g~tvlivsH~~~~~~~~ 211 (287)
T PRK13641 152 RRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQ--KAGHTVILVTHNMDDVAEY 211 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHh
Confidence 3445777888889999999773 2234444444432 3478899999998776554
No 312
>PRK10536 hypothetical protein; Provisional
Probab=98.41 E-value=1.6e-06 Score=66.75 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=37.5
Q ss_pred ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
...+.+|+.....+..++... ..+.++|++|+|||+|+..++..
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~----~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK----QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC----CeEEEECCCCCCHHHHHHHHHHH
Confidence 356788999999998888642 59999999999999999999874
No 313
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=98.41 E-value=1.6e-06 Score=68.13 Aligned_cols=28 Identities=32% Similarity=0.492 Sum_probs=24.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|+|++|+|||||++.+++.+.
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3468999999999999999999998543
No 314
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.41 E-value=9.6e-07 Score=75.25 Aligned_cols=56 Identities=16% Similarity=0.165 Sum_probs=37.7
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+.....+...+..++-++++|+.- ....+..++..+. ..+..||++||+.+....+
T Consensus 140 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~g~tvii~tH~~~~~~~~ 201 (490)
T PRK10938 140 ETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLH--QSGITLVLVLNRFDEIPDF 201 (490)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--hcCCeEEEEeCCHHHHHhh
Confidence 344556788888889999999873 2234444444443 2367899999998765544
No 315
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=2.2e-05 Score=60.25 Aligned_cols=170 Identities=14% Similarity=0.196 Sum_probs=97.7
Q ss_pred CcccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV 91 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
......=|-+..+++|...+..+ -...+-+..+||+|+|||-+|+..+.+-+..| +..
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF-----LKL------ 236 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF-----LKL------ 236 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH-----HHh------
Confidence 34556778889999988765321 12356889999999999999999987654332 110
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------H---HHHHhhcCCCC
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------E---QLQALAGNHDW 155 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~---~~~~l~~~~~~ 155 (216)
.-.++.. ++... ...-....+.-.-+..+.+|++|+++.. + .+-.++..+.-
T Consensus 237 ------AgPQLVQ-MfIGd-----GAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDG 304 (424)
T KOG0652|consen 237 ------AGPQLVQ-MFIGD-----GAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDG 304 (424)
T ss_pred ------cchHHHh-hhhcc-----hHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcC
Confidence 0011211 11111 0111223333344467899999988533 1 12223333321
Q ss_pred C--CCCcEEEEEeCCchh-----hhccCCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhccc
Q 039455 156 F--GFGSRIIITTRDEHV-----LKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSKC 215 (216)
Q Consensus 156 ~--~~~~~il~tsr~~~~-----~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~~ 215 (216)
. ....++|.+|.--++ +..-..+..++++.-+.+....+++-+...-+ .++-.+++|+++
T Consensus 305 Fss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRs 372 (424)
T KOG0652|consen 305 FSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARS 372 (424)
T ss_pred CCCccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhc
Confidence 1 234577776654333 22223578889887777777777776765544 445578888774
No 316
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=98.40 E-value=5.2e-06 Score=63.25 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=39.6
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
...-.+...+..++-++++|+.. ..+.+..++..+. .+..||++||+.+.... +++.+.+.
T Consensus 145 ~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~i~~l~ 211 (221)
T cd03244 145 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAF---KDCTVLTIAHRLDTIID--SDRILVLD 211 (221)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc---CCCEEEEEeCCHHHHhh--CCEEEEEE
Confidence 33445777888889999999873 2233444444432 34679999999877654 45555554
No 317
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.40 E-value=1.3e-06 Score=69.99 Aligned_cols=59 Identities=20% Similarity=0.238 Sum_probs=38.6
Q ss_pred ccccchhhhHHHHHHHhCCceEEEEEeCCCC-HH---------HHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 112 LIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ-LE---------QLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 112 ~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~-~~---------~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...+..+.....+.+.+-.++-++.+|+.-+ ++ .+..+... -+.++|..||+...+..+
T Consensus 132 ~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~-----l~~T~IYVTHDq~EAmtl 200 (338)
T COG3839 132 LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHER-----LGTTTIYVTHDQVEAMTL 200 (338)
T ss_pred ccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHh-----cCCcEEEEcCCHHHHHhh
Confidence 3444555666678889999999999998743 22 22222222 357889999998655544
No 318
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=98.40 E-value=1.6e-06 Score=70.84 Aligned_cols=56 Identities=14% Similarity=0.075 Sum_probs=35.4
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...-.+...+..++-++++|+.-+ ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus 137 kqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~-~~g~tiiivtH~~~~~~~~ 198 (354)
T TIGR02142 137 KQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHA-EFGIPILYVSHSLQEVLRL 198 (354)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHh
Confidence 334467788888899999998732 2333333333321 1257899999998765543
No 319
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=98.40 E-value=1.9e-06 Score=66.42 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.9
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..+.+++|.|++|+|||||++.+++.+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356899999999999999999999854
No 320
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.40 E-value=1.5e-06 Score=70.76 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=37.0
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+.....+.+.+..++-++++|+.-+ ...+...+..+.. ..+..+|++||+.+.+..+
T Consensus 138 Gq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~~~tvi~vTHd~~ea~~l 201 (353)
T TIGR03265 138 GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQR-RLGVTTIMVTHDQEEALSM 201 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHh
Confidence 34445568888889999999998732 1333333332210 2367899999998765443
No 321
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=98.40 E-value=1.7e-06 Score=66.63 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=38.9
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+..+ ...+..++..+. .+..||++||+.+.... ++..+.+
T Consensus 145 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tiii~sH~~~~~~~--~d~v~~l 209 (237)
T cd03252 145 QRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC---AGRTVIIIAHRLSTVKN--ADRIIVM 209 (237)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc---CCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 34457777788889999998732 234444444443 36789999999987753 4555444
No 322
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.40 E-value=7.8e-07 Score=64.01 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=27.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
+++|+|++|+|||+++..++......-..+.|++
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3689999999999999999987765545566665
No 323
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.39 E-value=1e-06 Score=75.27 Aligned_cols=56 Identities=13% Similarity=0.120 Sum_probs=37.3
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+.....+...+..++-++++|+.-+ ...+..++..+. ..+..||++||+.+....+
T Consensus 146 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~~~tvii~sHd~~~~~~~ 207 (501)
T PRK10762 146 EQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELK--SQGRGIVYISHRLKEIFEI 207 (501)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh
Confidence 3344567888888999999998732 233444444443 2367899999998766554
No 324
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=2.2e-06 Score=66.81 Aligned_cols=52 Identities=17% Similarity=0.125 Sum_probs=35.0
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...+.+.+..++-++++|+.- ....+..++..+. .+..+|++||+.+....+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~~tvii~sH~~~~~~~~ 215 (254)
T PRK14273 158 RLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK---ESYTIIIVTHNMQQAGRI 215 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHh
Confidence 445677777888899999773 2234444444443 257899999998876554
No 325
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.39 E-value=3.8e-06 Score=65.32 Aligned_cols=59 Identities=15% Similarity=0.123 Sum_probs=37.8
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+.- ....+..++..+. .+..+|++||+.+....+ ++..+.+
T Consensus 156 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tiii~sH~~~~~~~~-~d~i~~l 220 (252)
T PRK14272 156 RLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLK---KVTTIIIVTHNMHQAARV-SDTTSFF 220 (252)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHh-CCEEEEE
Confidence 345677777888999999773 2234444444443 247899999998876654 3343333
No 326
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.39 E-value=4.9e-06 Score=63.75 Aligned_cols=61 Identities=16% Similarity=0.208 Sum_probs=40.4
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+...-.+...+..++-++++|+.. +.+.+..++..+. .+..||++||+...... +++.+.+
T Consensus 144 ~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~--~d~i~~l 210 (229)
T cd03254 144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM---KGRTSIIIAHRLSTIKN--ADKILVL 210 (229)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHhh--CCEEEEE
Confidence 334446788888899999999873 2234444444442 36789999999877643 5555555
No 327
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=98.39 E-value=3.7e-06 Score=64.85 Aligned_cols=60 Identities=15% Similarity=0.150 Sum_probs=39.8
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
....+...+..++-++++|+.. ..+.+..++..+. .+..+|++||+.+... . +++.+.+.
T Consensus 146 qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~g~~vi~~sh~~~~~~-~-~d~v~~l~ 211 (238)
T cd03249 146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM---KGRTTIVIAHRLSTIR-N-ADLIAVLQ 211 (238)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc---CCCEEEEEeCCHHHHh-h-CCEEEEEE
Confidence 3445777778888899999873 2234444444432 4678999999988775 4 56655553
No 328
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.39 E-value=2e-06 Score=71.11 Aligned_cols=57 Identities=9% Similarity=-0.009 Sum_probs=36.5
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+...-.+...+..++-++++|+.-+ ...+..++..+.. ..+..||++||+.+.+..+
T Consensus 169 q~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~-~~g~TIIivTHd~~~~~~~ 231 (400)
T PRK10070 169 MRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQA-KHQRTIVFISHDLDEAMRI 231 (400)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-HCCCeEEEEECCHHHHHHh
Confidence 3334457888888999999998732 2334444433320 2367899999998765543
No 329
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=98.39 E-value=2.9e-06 Score=63.54 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=24.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|.|++|+|||||++.+++.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3468999999999999999999998543
No 330
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.38 E-value=9e-07 Score=68.93 Aligned_cols=29 Identities=38% Similarity=0.628 Sum_probs=25.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
..+..++|+|++|+|||||++.+++.+..
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 45689999999999999999999986543
No 331
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.38 E-value=2.3e-06 Score=66.94 Aligned_cols=115 Identities=21% Similarity=0.150 Sum_probs=64.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHH--hhcc-cc---cc-chhhhH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVL--MERN-LI---IW-DVHKGI 121 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~-~~---~~-~~~~~~ 121 (216)
...++|.|++|+|||||++.++..+... ...+++. -.... .. +...++..... .+.. .. .. ...+..
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~-g~~v~---~~-d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~ 184 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLR-GKKVG---IV-DERSEIAGCVNGVPQHDVGIRTDVLDGCPKAE 184 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEEC-CEEee---cc-hhHHHHHHHhcccccccccccccccccchHHH
Confidence 4789999999999999999999877643 2233332 11110 00 00112211110 0000 00 00 111112
Q ss_pred HHHHHHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhh
Q 039455 122 NLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVL 172 (216)
Q Consensus 122 ~~l~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~ 172 (216)
.+..-.....+-++++|++...+.+..+...+. .|..+|+|+|+..+.
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~ 232 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVE 232 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHH
Confidence 222223336889999999987777776665543 478899999987553
No 332
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.38 E-value=2.4e-06 Score=67.31 Aligned_cols=62 Identities=13% Similarity=0.028 Sum_probs=41.6
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
.....+...+..++-++++|+.- ..+.+..++..+. .+..||++||+.+....+ ++..+.++
T Consensus 167 ~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~---~~~tiii~sH~~~~~~~~-~d~i~~l~ 234 (274)
T PRK14265 167 QQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELK---EQYTIIMVTHNMQQASRV-ADWTAFFN 234 (274)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHh-CCEEEEEe
Confidence 33445777788889999999773 2244445554443 247899999999877665 55666664
No 333
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=3e-06 Score=65.14 Aligned_cols=54 Identities=20% Similarity=0.235 Sum_probs=35.4
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.-.+...+..++-++++|+.. ..+.+..++..+.. ..+..||++||+.+.....
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tvii~sH~~~~~~~~ 212 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNR-LQGTAFLVVTHDLQLAKRM 212 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHhh
Confidence 345777778889999999873 22334444433320 2367899999998876654
No 334
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.37 E-value=1.8e-06 Score=70.27 Aligned_cols=58 Identities=10% Similarity=0.032 Sum_probs=37.0
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+.....+.+.+..++-++++|+.-+ .+.+...+..+.. ..+..+|++||+.+.+..+
T Consensus 140 Gq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tii~vTHd~~e~~~l 203 (351)
T PRK11432 140 GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ-QFNITSLYVTHDQSEAFAV 203 (351)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHh
Confidence 34445568888889999999998732 2333333332210 2367899999998765443
No 335
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.37 E-value=1.2e-06 Score=74.72 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=37.2
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+...-.+...+..++-++++|+..+ ...+..++..+. ..+..+|++||+.+....+
T Consensus 139 q~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tvii~tH~~~~~~~~ 200 (491)
T PRK10982 139 QMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK--ERGCGIVYISHKMEEIFQL 200 (491)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEecCHHHHHHh
Confidence 3344467888888999999998732 233444444432 3467899999998766544
No 336
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=98.37 E-value=2.7e-06 Score=66.18 Aligned_cols=55 Identities=22% Similarity=0.129 Sum_probs=36.4
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...-.+...+..++-++++|+.-. ...+..++..+. ..+..||++||+.+.....
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~g~tii~~tH~~~~~~~~ 217 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLM--TSENSIILITHYQRLLDYI 217 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEecCHHHHHhh
Confidence 344457788888999999998732 233444443332 2467899999998766543
No 337
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.37 E-value=2.6e-06 Score=66.89 Aligned_cols=57 Identities=16% Similarity=0.184 Sum_probs=36.6
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+...-.+...+..++-++++|+... .+.+..++..+.. ..+..+|++||+.+....+
T Consensus 156 e~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~-~~~~tiiivsH~~~~i~~~ 218 (268)
T PRK10419 156 QLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ-QFGTACLFITHDLRLVERF 218 (268)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-HcCcEEEEEECCHHHHHHh
Confidence 3344467888888999999998732 2234444433321 1367899999998776543
No 338
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=98.37 E-value=2.8e-06 Score=74.65 Aligned_cols=58 Identities=19% Similarity=0.323 Sum_probs=39.2
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-+|++|+.- +.+.+..++..+ +..||++||+.+++..+ ++..+.+
T Consensus 447 qRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~-----~~tvi~vSHd~~~~~~~-~d~i~~l 510 (635)
T PRK11147 447 NRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY-----QGTVLLVSHDRQFVDNT-VTECWIF 510 (635)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-----CCeEEEEECCHHHHHHh-cCEEEEE
Confidence 3445777888889999999773 234455555443 34799999999877665 4444444
No 339
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.37 E-value=6.6e-07 Score=67.08 Aligned_cols=25 Identities=24% Similarity=0.175 Sum_probs=22.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
+.+++|+||+|+|||||++.++...
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHHHH
Confidence 3799999999999999999998743
No 340
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.36 E-value=2.5e-06 Score=65.63 Aligned_cols=48 Identities=21% Similarity=0.215 Sum_probs=36.7
Q ss_pred HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
.|...|..+-+.+.++.|+|++|+|||+|+.+++.....+-..+.|++
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 455556556667899999999999999999999765434456677775
No 341
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=2.1e-06 Score=70.25 Aligned_cols=131 Identities=17% Similarity=0.179 Sum_probs=72.5
Q ss_pred HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC--------CCCceEeeccccccccccCchHHHHHHHHHHHh-
Q 039455 38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD--------QFEASSFLANVREVSVTRGLVPLQEQLLSEVLM- 108 (216)
Q Consensus 38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 108 (216)
|...|+.+-+-.+.|+|+||+|+|||||++.+.+.+.. +.-.+-|+.-.... ..........++...+.
T Consensus 602 LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhrL~iG~FdQh~~E--~L~~Eetp~EyLqr~FNl 679 (807)
T KOG0066|consen 602 LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHRLRIGWFDQHANE--ALNGEETPVEYLQRKFNL 679 (807)
T ss_pred hhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccceeeeechhhhhHH--hhccccCHHHHHHHhcCC
Confidence 33444444445689999999999999999999986542 12234444311110 01111111111111110
Q ss_pred ----------hcc----------ccccchhhhHHHHHHHhCCceEEEEEeCC------CCHHHHHHhhcCCCCCCCCcEE
Q 039455 109 ----------ERN----------LIIWDVHKGINLIRWRLCRKRVLVVLDDV------DQLEQLQALAGNHDWFGFGSRI 162 (216)
Q Consensus 109 ----------~~~----------~~~~~~~~~~~~l~~~l~~~~~llvlDd~------~~~~~~~~l~~~~~~~~~~~~i 162 (216)
... ...+..+.....+..+.-+.+-+||||+. .+++.+..-...|. ..+
T Consensus 680 pyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~-----GgV 754 (807)
T KOG0066|consen 680 PYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN-----GGV 754 (807)
T ss_pred ChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc-----CcE
Confidence 000 11233445566778888889999999955 45555555555543 447
Q ss_pred EEEeCCchhhhcc
Q 039455 163 IITTRDEHVLKGH 175 (216)
Q Consensus 163 l~tsr~~~~~~~~ 175 (216)
|+.||+..+...-
T Consensus 755 i~VsHDeRLi~eT 767 (807)
T KOG0066|consen 755 IMVSHDERLIVET 767 (807)
T ss_pred EEEecccceeeec
Confidence 7788887665443
No 342
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=98.36 E-value=6.3e-06 Score=69.58 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=40.5
Q ss_pred ccchhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 114 IWDVHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 114 ~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+..+.....+.+.+..+|-+||.|+.-+. .++-+++..+.. .-+..+|+.||+..+...+
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~-e~g~t~lfISHDl~vV~~i 496 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE-ELGLTYLFISHDLAVVRYI 496 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHH-HhCCEEEEEeCCHHHHHhh
Confidence 344455566789999999999999988432 122222222210 2368899999999887765
No 343
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.36 E-value=4.5e-06 Score=69.81 Aligned_cols=48 Identities=19% Similarity=0.161 Sum_probs=40.7
Q ss_pred cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
....++||++.++.+...+..+ ..+.|.|++|+|||+||+.++.....
T Consensus 18 l~~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~~ 65 (498)
T PRK13531 18 LEKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQN 65 (498)
T ss_pred HhhhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhcc
Confidence 3556899999999988877643 68999999999999999999987654
No 344
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.36 E-value=2.1e-06 Score=67.93 Aligned_cols=53 Identities=19% Similarity=0.125 Sum_probs=34.9
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.-.+...+..++-++++|+.-+ .+.+..++..+. ..+..||++||+.+....+
T Consensus 153 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~~tiiivsH~~~~~~~~ 211 (280)
T PRK13649 153 RVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLH--QSGMTIVLVTHLMDDVANY 211 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeccHHHHHHh
Confidence 3457777788889999998732 233444443332 2367899999998765543
No 345
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=98.36 E-value=2.8e-06 Score=65.05 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=38.9
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
.-.+...+..++-++++|+.-+ .+.+..++..+.. ..+..||++||+.+....+ +++.+.+.
T Consensus 153 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~~sH~~~~~~~~-~d~i~~l~ 220 (228)
T cd03257 153 RVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQE-ELGLTLLFITHDLGVVAKI-ADRVAVMY 220 (228)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHh-cCeEEEEe
Confidence 3456777778889999998732 2333343333320 1267899999998876654 45555543
No 346
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.36 E-value=2.6e-06 Score=66.09 Aligned_cols=62 Identities=16% Similarity=0.088 Sum_probs=39.1
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+.....+.+.+..++-++++|+.. +...+..++..+. .+..+|++||+.+....+ ++..+.+
T Consensus 147 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~---~~~tiii~tH~~~~~~~~-~d~i~~l 214 (246)
T PRK14269 147 QQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELS---HNLSMIMVTHNMQQGKRV-ADYTAFF 214 (246)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh---CCCEEEEEecCHHHHHhh-CcEEEEE
Confidence 334446788888899999999873 2233444444332 267899999998765543 3343333
No 347
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.36 E-value=2.9e-06 Score=66.41 Aligned_cols=55 Identities=9% Similarity=0.018 Sum_probs=35.4
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
....+...+..++-+|++|+..+ .+.+..++..+.. ..+..||++||+.+....+
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tvii~tH~~~~~~~~ 219 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQ-NDGITVVVTLHQVDYALRY 219 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 34457777788889999998732 2344444443321 1367899999998765443
No 348
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=98.36 E-value=3.8e-06 Score=64.27 Aligned_cols=35 Identities=34% Similarity=0.432 Sum_probs=30.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
-.++|.|++|+|||+|+..+.......|..+.++.
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 47899999999999999999998888887776664
No 349
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.36 E-value=1.4e-05 Score=72.23 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=37.8
Q ss_pred cccccchhHHHHHHHHHhc-------CCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 26 DGLVGIASRMEKMNGYLEA-------GLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~-------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
...+|.+..++.+.+.+.. +.....++.++||+|+|||.||+.++..+.
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678999988888776642 111234789999999999999999998764
No 350
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=98.35 E-value=2.5e-06 Score=69.59 Aligned_cols=57 Identities=12% Similarity=0.055 Sum_probs=37.0
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+.....+.+.+..++-++++|+.-+ ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus 141 q~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~g~tii~vTHd~~ea~~~ 203 (353)
T PRK10851 141 QKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHE-ELKFTSVFVTHDQEEAMEV 203 (353)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 3444568888888999999998732 2333333333321 2367899999998765554
No 351
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=98.35 E-value=3.3e-06 Score=66.25 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=35.1
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
....+...+..++-++++|+... .+.+..++..+.. ..+..||++||+......+
T Consensus 150 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~-~~~~tiii~tH~~~~~~~~ 210 (265)
T PRK10253 150 QRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR-EKGYTLAAVLHDLNQACRY 210 (265)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 34457778888899999998732 2333344433321 1367899999998765443
No 352
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=2.4e-06 Score=67.91 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=24.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+.+++|.|++|+|||||++.+++.+.
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3457999999999999999999998653
No 353
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=98.35 E-value=3.1e-06 Score=64.74 Aligned_cols=61 Identities=10% Similarity=0.139 Sum_probs=39.4
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
.-.+...+..++-++++|+.- ..+.+..++..+.. ..+..+|++||+.+... . ++..+.+.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tvii~sh~~~~~~-~-~d~i~~l~ 211 (225)
T PRK10247 145 RISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVR-EQNIAVLWVTHDKDEIN-H-ADKVITLQ 211 (225)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEECChHHHH-h-CCEEEEEe
Confidence 345777888889999999773 22333343333221 23678999999988775 3 66666663
No 354
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=98.35 E-value=7.4e-06 Score=64.33 Aligned_cols=52 Identities=12% Similarity=0.091 Sum_probs=34.7
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.-.+...+..++-+|++|+.- ....+..++..+. .+..||++||+.+....+
T Consensus 171 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~---~~~tiiivtH~~~~~~~~ 228 (267)
T PRK14235 171 RLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELR---QNYTIVIVTHSMQQAARV 228 (267)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHh---cCCeEEEEEcCHHHHHhh
Confidence 345777777888999999873 2234444444443 246899999998776554
No 355
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.35 E-value=1.6e-06 Score=74.12 Aligned_cols=55 Identities=16% Similarity=0.198 Sum_probs=36.8
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...-.+...+..++-++++|+.- ....+..++..+. ..+..||++||+.+....+
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiiiitHd~~~~~~~ 206 (501)
T PRK11288 146 RQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELR--AEGRVILYVSHRMEEIFAL 206 (501)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHh
Confidence 33445777888889999999873 2234444444433 2467899999998766543
No 356
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.35 E-value=2.1e-06 Score=68.04 Aligned_cols=55 Identities=18% Similarity=0.103 Sum_probs=35.9
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
....+...+..++-++++|+..+ ...+..++..+.. ..+.+||++||+.+.+..+
T Consensus 152 qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tvl~vtH~~~~~~~~ 212 (286)
T PRK13646 152 RKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQT-DENKTIILVSHDMNEVARY 212 (286)
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHHh
Confidence 34457788888899999998732 2334444433321 2468999999998765443
No 357
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.35 E-value=5.4e-06 Score=63.45 Aligned_cols=60 Identities=12% Similarity=0.096 Sum_probs=37.7
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.-+ ...+..++..+. .. ..||++||+.+....+ ++..+.+
T Consensus 148 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~-~tii~~sH~~~~~~~~-~d~i~~l 213 (227)
T cd03260 148 QRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELK--KE-YTIVIVTHNMQQAARV-ADRTAFL 213 (227)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--hC-cEEEEEeccHHHHHHh-CCEEEEE
Confidence 34456777778889999998732 233444444433 23 6799999998766554 3444444
No 358
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.35 E-value=1.6e-06 Score=74.34 Aligned_cols=56 Identities=14% Similarity=0.192 Sum_probs=37.5
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+.....+...+..++-++++|+.-+ ...+..++..+. ..+..||++||+...+..+
T Consensus 150 ~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tiiivsHd~~~~~~~ 211 (510)
T PRK09700 150 HKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLR--KEGTAIVYISHKLAEIRRI 211 (510)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHh
Confidence 3344467888888999999998732 233444444433 2367899999998776554
No 359
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.34 E-value=1.2e-06 Score=69.18 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=35.2
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhh
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLK 173 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~ 173 (216)
.....+...+..++-++++|+... ...+..++..+.. ..+.+||++||+.+...
T Consensus 146 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tilivtH~~~~~~ 205 (279)
T PRK13650 146 KQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD-DYQMTVISITHDLDEVA 205 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHH
Confidence 344467888888999999998742 2333333333321 13688999999987664
No 360
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.34 E-value=3.6e-06 Score=72.18 Aligned_cols=48 Identities=21% Similarity=0.391 Sum_probs=39.1
Q ss_pred cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.-.+++|.+..++.+...+... ....+.|+|++|+|||++|+.+.+..
T Consensus 63 ~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~~ 110 (531)
T TIGR02902 63 SFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEEA 110 (531)
T ss_pred CHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3456999999999998776543 34688999999999999999998754
No 361
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=2.9e-06 Score=73.00 Aligned_cols=132 Identities=20% Similarity=0.267 Sum_probs=71.1
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCce--------Eeeccccc--cccccCchH-------------HHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEAS--------SFLANVRE--VSVTRGLVP-------------LQEQLL 103 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~--------~~~~~~~~--~~~~~~~~~-------------~~~~l~ 103 (216)
..+..++|.|++|+|||||++.+++........+ .++.-... ......+.. ....++
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l 422 (530)
T PRK15064 343 EAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTL 422 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHH
Confidence 3567999999999999999999998643321111 11110000 000001111 011122
Q ss_pred HHHHh------hccccccchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchh
Q 039455 104 SEVLM------ERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHV 171 (216)
Q Consensus 104 ~~~~~------~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~ 171 (216)
..+.. ......+..+...-.+...+..++-++++|+.- ..+.+..++..+ +..||++||+.+.
T Consensus 423 ~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-----~~tvi~vsHd~~~ 497 (530)
T PRK15064 423 GRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-----EGTLIFVSHDREF 497 (530)
T ss_pred HHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC-----CCEEEEEeCCHHH
Confidence 22110 000111223334446788888899999999873 223444444443 2479999999987
Q ss_pred hhccCCcceEEec
Q 039455 172 LKGHGVTNIYKVR 184 (216)
Q Consensus 172 ~~~~~~~~~~~l~ 184 (216)
+..+ ++..+.+.
T Consensus 498 ~~~~-~d~i~~l~ 509 (530)
T PRK15064 498 VSSL-ATRIIEIT 509 (530)
T ss_pred HHHh-CCEEEEEE
Confidence 7765 45555553
No 362
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.34 E-value=1e-06 Score=71.83 Aligned_cols=95 Identities=17% Similarity=0.107 Sum_probs=55.9
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCC-CCceEeeccccccccccCchHHHHHHHHHHHhhccccccch-----hhh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDV-----HKG 120 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~ 120 (216)
..+..++|+|++|+|||||++.+++.+... |....|+...+.- ...+.++...+...+........... ...
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER--~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v 243 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMV 243 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCC--CccHHHHHHHhhceEEEecCCCChHHHHHHHHHH
Confidence 356789999999999999999999977655 7777787644321 23455555555332211111100000 111
Q ss_pred HHHHHHH-hCCceEEEEEeCCCCH
Q 039455 121 INLIRWR-LCRKRVLVVLDDVDQL 143 (216)
Q Consensus 121 ~~~l~~~-l~~~~~llvlDd~~~~ 143 (216)
.+..... ..+++.+|++|++...
T Consensus 244 ~e~Ae~~~~~GkdVVLlIDEitR~ 267 (415)
T TIGR00767 244 IEKAKRLVEHKKDVVILLDSITRL 267 (415)
T ss_pred HHHHHHHHHcCCCeEEEEEChhHH
Confidence 1112222 2468999999998533
No 363
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.34 E-value=5.4e-06 Score=64.54 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=24.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+.+++|.|++|+|||||++.+++.+.
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3468999999999999999999998654
No 364
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=3.3e-06 Score=66.96 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=38.3
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
....+...+..++-++++|+.- ....+..++..+. .+..||++||+.+....+ +++.+.+
T Consensus 189 qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~---~~~tvIivsH~~~~~~~~-~d~i~~L 254 (286)
T PRK14275 189 QRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELR---GSYTIMIVTHNMQQASRV-SDYTMFF 254 (286)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHh-CCEEEEE
Confidence 3445777888888999999873 2233444444333 246799999998776554 3444444
No 365
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.1e-05 Score=70.52 Aligned_cols=156 Identities=15% Similarity=0.223 Sum_probs=92.9
Q ss_pred ccccccchhHHHHHHHHHh---cC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccC
Q 039455 25 VDGLVGIASRMEKMNGYLE---AG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG 94 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~---~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (216)
=+++.|-++..++|.+++. .+ -.-++-+.|+||+|+|||-||++++.+. .+.|++..++
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~svSGS------ 378 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSVSGS------ 378 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceeeechH------
Confidence 3567888877777766543 22 1225789999999999999999999864 3555543222
Q ss_pred chHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-----------------HHHHHhhcCCCCCC
Q 039455 95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-----------------EQLQALAGNHDWFG 157 (216)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----------------~~~~~l~~~~~~~~ 157 (216)
++...+.+. ........+...-...|+++.+|+++.. .-+.+++..+.-+.
T Consensus 379 ------EFvE~~~g~------~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 379 ------EFVEMFVGV------GASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred ------HHHHHhccc------chHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 111111111 0112233344444567899999988533 22455554443222
Q ss_pred --CCcEEEEEeCCchhhhcc-----CCcceEEecCCChHHHHHHHhhhhcCCC
Q 039455 158 --FGSRIIITTRDEHVLKGH-----GVTNIYKVRGLDYVEALQLFHLKVSKGK 203 (216)
Q Consensus 158 --~~~~il~tsr~~~~~~~~-----~~~~~~~l~~l~~~~~~~ll~~~~~~~~ 203 (216)
.+.-++-+|+.++.++.. .-+..+.+..-+.....++|..++..-.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~ 499 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK 499 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC
Confidence 223334455554443321 2467888988888999999998886544
No 366
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.33 E-value=3.4e-06 Score=63.18 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.2
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 039455 51 FIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.++|+|++|+|||||++.++..
T Consensus 24 ~~~i~G~nGsGKStll~al~~l 45 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRWV 45 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 8899999999999999998754
No 367
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.33 E-value=4e-06 Score=64.57 Aligned_cols=63 Identities=16% Similarity=0.101 Sum_probs=38.4
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...-.+...+..++-++++|+.. +.+.+..++..+.. ..+..+|++||+......+ +++.+.+
T Consensus 135 ~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~-~~~~tili~tH~~~~~~~~-~d~i~~l 203 (235)
T cd03299 135 QQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK-EFGVTVLHVTHDFEEAWAL-ADKVAIM 203 (235)
T ss_pred HHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHh-CCEEEEE
Confidence 33445777888888999999773 22333343333321 2367899999998765543 3344333
No 368
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=98.33 E-value=2.9e-06 Score=66.26 Aligned_cols=55 Identities=22% Similarity=0.162 Sum_probs=35.6
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
....+...+..++-++++|+..+ ...+..++..+.. ..+..||++||+.+....+
T Consensus 158 qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~~tii~isH~~~~~~~~ 218 (258)
T PRK11701 158 QRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVR-ELGLAVVIVTHDLAVARLL 218 (258)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHHh
Confidence 34457778888999999998732 2333333333221 2367899999998876653
No 369
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=98.33 E-value=4.5e-06 Score=64.99 Aligned_cols=59 Identities=14% Similarity=0.070 Sum_probs=37.4
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+.- ....+..++..+. .+..||++||+.+....+ +++.+.+
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tvii~tH~~~~~~~~-~d~v~~l 221 (253)
T PRK14242 157 RLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELK---ARYTIIIVTHNMQQAARV-SDVTAFF 221 (253)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---cCCeEEEEEecHHHHHHh-CCEEEEE
Confidence 345677777888999999773 2234444444442 256899999998766544 3444333
No 370
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.33 E-value=4.9e-06 Score=64.65 Aligned_cols=52 Identities=15% Similarity=0.114 Sum_probs=34.6
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...+...+..++-++++|+.. +...+..++..+. .+..+|++||+.+....+
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tili~sH~~~~~~~~ 211 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS---ENYTIVIVTHNIGQAIRI 211 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHh---cCcEEEEEeCCHHHHHHh
Confidence 445677777888999999873 2234444444443 246899999998765443
No 371
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.33 E-value=1.8e-06 Score=64.11 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=35.9
Q ss_pred HHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 124 IRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 124 l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+++.++-+|-+|++|+.- +...++.+...+. ...+|++.||+..-+.+.
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk---~~yTIviVTHnmqQAaRv 214 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELK---KKYTIVIVTHNMQQAARV 214 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH---hccEEEEEeCCHHHHHHH
Confidence 677888899999999773 3345666666554 567899999988665554
No 372
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.33 E-value=2.7e-06 Score=72.84 Aligned_cols=55 Identities=13% Similarity=0.121 Sum_probs=37.9
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...-.+...+..++-+|++|+.- ....+..++..+. ..+..||++||+.+.+..+
T Consensus 409 kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~--~~g~tiIivsHd~~~i~~~ 469 (510)
T PRK15439 409 QQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIA--AQNVAVLFISSDLEEIEQM 469 (510)
T ss_pred HHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHH--hCCCEEEEECCCHHHHHHh
Confidence 33445777888888999999762 3345555554443 2367899999998876654
No 373
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.33 E-value=4.6e-06 Score=65.19 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=34.9
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
..-.+...+..++-++++|+.-+ ...+..++..+. .+..||++||+.+....+
T Consensus 163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~---~~~tiii~sH~~~~~~~~ 221 (260)
T PRK10744 163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELK---QDYTVVIVTHNMQQAARC 221 (260)
T ss_pred HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHh
Confidence 34457778888899999998732 233444444332 246799999998765543
No 374
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.33 E-value=2.8e-05 Score=70.25 Aligned_cols=50 Identities=18% Similarity=0.234 Sum_probs=38.3
Q ss_pred ccccccchhHHHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 25 VDGLVGIASRMEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
...++|.+..++.+...+... ......+.++||+|+|||+||+.++..+.
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 356889999999987766411 11124678999999999999999998764
No 375
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=3.9e-06 Score=67.58 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=35.7
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKG 174 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~ 174 (216)
.....+...+..++-+|++|+.-+ ...+..++..+. ..+.+||++||+.+....
T Consensus 182 kqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~--~~g~TiiivtHd~~~~~~ 241 (320)
T PRK13631 182 KRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAK--ANNKTVFVITHTMEHVLE 241 (320)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHHH
Confidence 344467888888999999998732 233444443332 246789999999875443
No 376
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.32 E-value=4e-06 Score=67.71 Aligned_cols=46 Identities=22% Similarity=0.125 Sum_probs=37.4
Q ss_pred cccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 28 LVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 28 ~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
++|++..++.+.+.+..-......|.|+|++|+||+++|+.+....
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s 46 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLS 46 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhc
Confidence 4788888888888776544456789999999999999999887643
No 377
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.32 E-value=2e-06 Score=67.80 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=38.3
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
....+...+..++-++++|+.- +...+..++..+. ..+..||++||+.+.... +++.+.+
T Consensus 143 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~--~~g~til~~tH~~~~~~~--~d~v~~l 208 (274)
T PRK13644 143 QCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLH--EKGKTIVYITHNLEELHD--ADRIIVM 208 (274)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEecCHHHHhh--CCEEEEE
Confidence 3445777888899999999873 2233444443333 247889999999877643 4444333
No 378
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.32 E-value=4.8e-06 Score=64.84 Aligned_cols=60 Identities=12% Similarity=0.047 Sum_probs=37.8
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
....+...+..++-++++|+.. ....+..++..+. .+..+|++||+......+ +++.+.+
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~---~~~tvii~sh~~~~~~~~-~d~v~~l 221 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLK---KEYTVIIVTHNMQQAARV-SDYTGFM 221 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHh---hCceEEEEEcCHHHHHhh-CCEEEEE
Confidence 3445777778888999999873 2234444444443 246899999998766543 3344333
No 379
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.32 E-value=3.4e-06 Score=68.89 Aligned_cols=56 Identities=11% Similarity=0.041 Sum_probs=36.2
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...-.+.+.+..++-++++|+.-+ ...+.+++..+.. ..+.+||++||+.+.+..+
T Consensus 135 ~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~-~~~~Tii~vTHd~~ea~~~ 196 (363)
T TIGR01186 135 QQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQA-TLQKTIVFITHDLDEAIRI 196 (363)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 334457888888999999998742 2334444333210 2367899999998765543
No 380
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.32 E-value=4.8e-07 Score=68.03 Aligned_cols=23 Identities=26% Similarity=0.176 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
+..++|+|++|+|||||++.++.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 37999999999999999999984
No 381
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.32 E-value=5.9e-06 Score=65.07 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=24.5
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|+|++|+|||||++.+.+.+.
T Consensus 28 ~~Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 28 SPGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 3468999999999999999999998654
No 382
>PRK13409 putative ATPase RIL; Provisional
Probab=98.32 E-value=3.4e-06 Score=73.24 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=37.1
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...-.+...+..++-+++||+.-+ ...+..++..+. . +..+|++||+.+.+..+
T Consensus 218 ~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~--~-g~tvIivsHd~~~l~~~ 277 (590)
T PRK13409 218 LQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELA--E-GKYVLVVEHDLAVLDYL 277 (590)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--C-CCEEEEEeCCHHHHHHh
Confidence 334457778888899999998732 234444454443 3 67899999998776654
No 383
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=7.5e-06 Score=64.44 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=24.8
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|.|++|+|||||++.+++.+.
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4568999999999999999999998654
No 384
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.31 E-value=2.5e-06 Score=72.92 Aligned_cols=62 Identities=13% Similarity=0.168 Sum_probs=40.2
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...-.+...+..++-++++|+.- ....+..++..+. ..+..||++||+.+....+ ++..+.+
T Consensus 409 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tviivsHd~~~~~~~-~d~v~~l 476 (500)
T TIGR02633 409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLA--QEGVAIIVVSSELAEVLGL-SDRVLVI 476 (500)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHH--hCCCEEEEECCCHHHHHHh-CCEEEEE
Confidence 33445777888889999999773 2233444444443 2467899999998877665 3444444
No 385
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.31 E-value=3.2e-06 Score=69.37 Aligned_cols=58 Identities=16% Similarity=0.119 Sum_probs=36.8
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+.....+.+.+..++-++++|+.-+ ...+...+..+.. ..+..+|++||+...+..+
T Consensus 148 Gq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~-~~g~tiI~vTHd~~ea~~l 211 (375)
T PRK09452 148 GQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQR-KLGITFVFVTHDQEEALTM 211 (375)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 34445568888888999999998732 1333333333221 2367899999998764443
No 386
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=1.2e-05 Score=67.29 Aligned_cols=134 Identities=19% Similarity=0.169 Sum_probs=77.9
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWR 127 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (216)
....+++.||+|+|||+||..++.. ..||.+..++. .+ .-.+.+... .......+...
T Consensus 537 ~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiSp-e~---miG~sEsaK----------------c~~i~k~F~DA 594 (744)
T KOG0741|consen 537 PLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIISP-ED---MIGLSESAK----------------CAHIKKIFEDA 594 (744)
T ss_pred cceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeCh-HH---ccCccHHHH----------------HHHHHHHHHHh
Confidence 3568999999999999999999864 56888887751 11 001111000 00111222333
Q ss_pred hCCceEEEEEeCCCCHHHH---------------HHhhcCCCCCCCCcEEEEEeCCchhhhccC----CcceEEecCCCh
Q 039455 128 LCRKRVLVVLDDVDQLEQL---------------QALAGNHDWFGFGSRIIITTRDEHVLKGHG----VTNIYKVRGLDY 188 (216)
Q Consensus 128 l~~~~~llvlDd~~~~~~~---------------~~l~~~~~~~~~~~~il~tsr~~~~~~~~~----~~~~~~l~~l~~ 188 (216)
-.+.-.+||+||+..+-+| .-++...+-.++..-|+-||....++..++ ....+.++.++.
T Consensus 595 YkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 595 YKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTT 674 (744)
T ss_pred hcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCc
Confidence 3345569999999655332 222233222223334455666667766653 346799999987
Q ss_pred -HHHHHHHhhhh-cCCC
Q 039455 189 -VEALQLFHLKV-SKGK 203 (216)
Q Consensus 189 -~~~~~ll~~~~-~~~~ 203 (216)
++..+.+...- |.+.
T Consensus 675 ~~~~~~vl~~~n~fsd~ 691 (744)
T KOG0741|consen 675 GEQLLEVLEELNIFSDD 691 (744)
T ss_pred hHHHHHHHHHccCCCcc
Confidence 77777777544 4433
No 387
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=8.2e-05 Score=59.79 Aligned_cols=155 Identities=10% Similarity=0.038 Sum_probs=82.6
Q ss_pred HHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhh----
Q 039455 34 RMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLME---- 109 (216)
Q Consensus 34 ~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 109 (216)
.-+.|.+.+..+ .-...+.++|+.|+||+++|+.++..+--.-+... ..++. ...+..+...-...
T Consensus 10 ~~~~l~~~~~~~-rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~--~~Cg~-------C~sC~~~~~g~HPD~~~i 79 (325)
T PRK06871 10 TYQQITQAFQQG-LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGD--QPCGQ-------CHSCHLFQAGNHPDFHIL 79 (325)
T ss_pred HHHHHHHHHHcC-CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCCC-------CHHHHHHhcCCCCCEEEE
Confidence 344555555543 33468889999999999999999986532111000 00000 00000000000000
Q ss_pred --ccccccchhhhHHHHHHH-----hCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-hhhhcc-CCc
Q 039455 110 --RNLIIWDVHKGINLIRWR-----LCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-HVLKGH-GVT 178 (216)
Q Consensus 110 --~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~~~~~~-~~~ 178 (216)
........+...+ +.+. ..++.-++|||+++.. .....++..+..-..+..+|++|..+ .+...+ ..-
T Consensus 80 ~p~~~~~I~id~iR~-l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC 158 (325)
T PRK06871 80 EPIDNKDIGVDQVRE-INEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC 158 (325)
T ss_pred ccccCCCCCHHHHHH-HHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc
Confidence 0000011111111 1111 2345679999999855 45666666655434556666676654 344343 234
Q ss_pred ceEEecCCChHHHHHHHhhhh
Q 039455 179 NIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 179 ~~~~l~~l~~~~~~~ll~~~~ 199 (216)
..+.+.|++.++..+.+....
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQS 179 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHh
Confidence 789999999999999888753
No 388
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.31 E-value=2.6e-06 Score=72.83 Aligned_cols=55 Identities=11% Similarity=0.172 Sum_probs=37.7
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...-.+...+..++-+|++|+.- +...+..++..+. ..+..||++||+.+....+
T Consensus 402 ~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tviivsHd~~~~~~~ 462 (501)
T PRK11288 402 QQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA--AQGVAVLFVSSDLPEVLGV 462 (501)
T ss_pred HHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH--hCCCEEEEECCCHHHHHhh
Confidence 33445777888899999999773 2344444444443 3467899999998876655
No 389
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.31 E-value=2.3e-07 Score=68.77 Aligned_cols=21 Identities=24% Similarity=0.120 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 039455 51 FIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~ 71 (216)
+++|+|++|.||||+++.++.
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHH
Confidence 368999999999999999984
No 390
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=98.31 E-value=1.3e-05 Score=60.81 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=22.2
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.+...+|+|++|+|||||++.+...
T Consensus 56 ~ge~W~I~G~NGsGKTTLL~ll~~~ 80 (257)
T COG1119 56 PGEHWAIVGPNGAGKTTLLSLLTGE 80 (257)
T ss_pred CCCcEEEECCCCCCHHHHHHHHhcc
Confidence 3578999999999999999999874
No 391
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=6.9e-06 Score=64.04 Aligned_cols=166 Identities=17% Similarity=0.168 Sum_probs=88.3
Q ss_pred ccccccchhHHHHHHHHHh----------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccC
Q 039455 25 VDGLVGIASRMEKMNGYLE----------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRG 94 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~----------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (216)
....-|-+...+.|...+. .+..--+.|.++||+|+|||.||++++...... |++..++
T Consensus 132 WsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST-----FFSvSSS------ 200 (439)
T KOG0739|consen 132 WSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST-----FFSVSSS------ 200 (439)
T ss_pred hhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-----eEEeehH------
Confidence 4556777777777766432 111225689999999999999999999865433 2321111
Q ss_pred chHHHHHHHHHHHhhccccccchhhhHHHHHHHh-CCceEEEEEeCCCCH---------HHHH----HhhcCCC---CCC
Q 039455 95 LVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL-CRKRVLVVLDDVDQL---------EQLQ----ALAGNHD---WFG 157 (216)
Q Consensus 95 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~---------~~~~----~l~~~~~---~~~ 157 (216)
++.+..++ ..+.++..+..+. ++++.+|++|++++. +... .++..+. +..
T Consensus 201 ------DLvSKWmG-------ESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~ 267 (439)
T KOG0739|consen 201 ------DLVSKWMG-------ESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDN 267 (439)
T ss_pred ------HHHHHHhc-------cHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCC
Confidence 22222211 1233444444433 468999999999744 2222 2222222 112
Q ss_pred CCcEEEEEeCCchhhhcc---CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 158 FGSRIIITTRDEHVLKGH---GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 158 ~~~~il~tsr~~~~~~~~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
.|.-+|-+|..+-.+... .....|-++--.......+|+-+++... ..++++++|++
T Consensus 268 ~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~ 329 (439)
T KOG0739|consen 268 DGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELAR 329 (439)
T ss_pred CceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHh
Confidence 344455566655333221 1234444543334444456665654432 34467777765
No 392
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=3.5e-06 Score=72.14 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=37.4
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.....+...+..++-++++|+.- +...+..++..+. ..+..||++||+.+....+
T Consensus 411 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tvi~~sHd~~~~~~~ 471 (506)
T PRK13549 411 QQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLV--QQGVAIIVISSELPEVLGL 471 (506)
T ss_pred HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh
Confidence 33445777888888999999773 2344445544443 2467899999998776654
No 393
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=98.31 E-value=5.1e-06 Score=65.22 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=24.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|.|++|+|||||++.+++...
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3568999999999999999999998653
No 394
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=98.31 E-value=2.6e-06 Score=66.86 Aligned_cols=62 Identities=15% Similarity=0.043 Sum_probs=38.1
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.-+ ...+..++..+.. ..+..||++||+.+....+ +++.+.+
T Consensus 156 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~g~tviivsH~~~~~~~~-~d~i~~l 223 (267)
T PRK15112 156 QRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQE-KQGISYIYVTQHLGMMKHI-SDQVLVM 223 (267)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-HcCcEEEEEeCCHHHHHHh-cCEEEEE
Confidence 34457777788899999998732 2334444433321 1367899999998776654 3344333
No 395
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.31 E-value=1.5e-06 Score=68.74 Aligned_cols=54 Identities=22% Similarity=0.198 Sum_probs=34.7
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.-.+...+..++-++++|+... ...+..++..+.. ..+..||++||+.+....+
T Consensus 149 rl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tillvsH~~~~~~~~ 208 (283)
T PRK13636 149 RVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQK-ELGLTIIIATHDIDIVPLY 208 (283)
T ss_pred HHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEecCHHHHHHh
Confidence 4457777888899999998732 2333344433321 2367899999998776543
No 396
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=98.30 E-value=3.5e-06 Score=68.11 Aligned_cols=55 Identities=20% Similarity=0.135 Sum_probs=35.8
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
....+...+..++-+||+|+.-+ ..++..++..+.. ..+..+|++||+...+..+
T Consensus 168 QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~~~til~iTHdl~~~~~~ 228 (331)
T PRK15079 168 QRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQR-EMGLSLIFIAHDLAVVKHI 228 (331)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHh
Confidence 34457788888999999998742 2233333333321 2367899999998776553
No 397
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=5.8e-06 Score=64.94 Aligned_cols=59 Identities=17% Similarity=0.085 Sum_probs=37.2
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+.- +...+..++..+. .+..||++||+.+....+ +++.+.+
T Consensus 172 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~~tiii~tH~~~~~~~~-~d~v~~l 236 (268)
T PRK14248 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELK---EEYSIIIVTHNMQQALRV-SDRTAFF 236 (268)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHh---cCCEEEEEEeCHHHHHHh-CCEEEEE
Confidence 335677777888899999773 2234444444442 246799999998765544 3444444
No 398
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.30 E-value=5e-06 Score=64.64 Aligned_cols=60 Identities=10% Similarity=0.055 Sum_probs=38.0
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
..-.+...+..++-++++|+.. +...+..++..+. .+..||++||+.+....+ +++.+.+
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~~tiiivtH~~~~~~~~-~d~v~~l 218 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK---KDYTIVIVTHNMQQAARV-SDKTAFF 218 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHhh-CCEEEEE
Confidence 3445777778888899999773 2234444444432 257899999998766543 3444444
No 399
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.30 E-value=3.7e-06 Score=65.53 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=24.5
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|.|++|+|||||++.+++...
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4568999999999999999999998654
No 400
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.30 E-value=3e-06 Score=72.30 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=42.0
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+...-.+...+..++-++++|+.- ....+..++..+. ..+..||++||+.+....+ ++..+.+
T Consensus 396 q~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~--~~~~tvi~vsHd~~~~~~~-~d~v~~l 464 (491)
T PRK10982 396 NQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELA--KKDKGIIIISSEMPELLGI-TDRILVM 464 (491)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHH--HCCCEEEEECCChHHHHhh-CCEEEEE
Confidence 344556788888899999999762 3344544454443 2467899999998877665 4444444
No 401
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=98.30 E-value=5.9e-06 Score=64.20 Aligned_cols=59 Identities=12% Similarity=0.065 Sum_probs=37.5
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...+...+..++-++++|+... ...+..++..+. .+..||++||+.+....+ +++.+.+
T Consensus 154 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tiii~sH~~~~~~~~-~d~v~~l 218 (250)
T PRK14240 154 RLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELK---KDYTIVIVTHNMQQASRI-SDKTAFF 218 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEEeCHHHHHhh-CCEEEEE
Confidence 4457777778888999998732 233444444442 256899999998765554 3444444
No 402
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.30 E-value=5e-06 Score=64.93 Aligned_cols=28 Identities=32% Similarity=0.460 Sum_probs=24.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|.|++|+|||||++.+++...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3467999999999999999999998543
No 403
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.30 E-value=8.3e-07 Score=71.43 Aligned_cols=57 Identities=16% Similarity=0.191 Sum_probs=38.4
Q ss_pred ccchhhhHHHHHHHhCCceEEEEEeCCCCH------H----HHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 114 IWDVHKGINLIRWRLCRKRVLVVLDDVDQL------E----QLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 114 ~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------~----~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+..+....++.+.|..+|-+|++|+.-+. + ++..+... .|.+.|+.||+.+.+-.+
T Consensus 137 LSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~-----~giT~i~VTHDqeEAl~m 203 (352)
T COG3842 137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRE-----LGITFVYVTHDQEEALAM 203 (352)
T ss_pred hChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHh-----cCCeEEEEECCHHHHhhh
Confidence 344556667899999999999999987322 1 22233222 378899999998654443
No 404
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.30 E-value=7.4e-07 Score=67.81 Aligned_cols=118 Identities=14% Similarity=0.021 Sum_probs=61.0
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHH-HhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhcc--ccccchhhhHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYN-TLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERN--LIIWDVHKGINLI 124 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~l 124 (216)
.+..++|+|++|.||||+++.++. .+..+.....|-... ... ...+++..+...++ ...+.+..-...+
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~-~~~-------~~~~i~~~~~~~d~~~~~~StF~~e~~~~ 101 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSA-TLS-------IFDSVLTRMGASDSIQHGMSTFMVELSET 101 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCce-EEe-------ccceEEEEecCccccccccchHHHHHHHH
Confidence 357899999999999999999987 443333333333211 000 01111111111111 0111222223334
Q ss_pred HHHhC--CceEEEEEeCCCC----HHH---HHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455 125 RWRLC--RKRVLVVLDDVDQ----LEQ---LQALAGNHDWFGFGSRIIITTRDEHVLKG 174 (216)
Q Consensus 125 ~~~l~--~~~~llvlDd~~~----~~~---~~~l~~~~~~~~~~~~il~tsr~~~~~~~ 174 (216)
...+. +++.++++|++.. .+. ...++..+.. ..++.+|++||+.++...
T Consensus 102 ~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~-~~~~~~i~~TH~~~l~~~ 159 (222)
T cd03287 102 SHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLE-EKKCLVLFVTHYPSLGEI 159 (222)
T ss_pred HHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHh-ccCCeEEEEcccHHHHHH
Confidence 44433 4688999999721 221 1223333331 146889999999877543
No 405
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.30 E-value=8.3e-06 Score=70.27 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=42.0
Q ss_pred cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
....++|++..++++.+.+..-......|.|+|++|+|||++|+.+.....
T Consensus 194 ~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~ 244 (534)
T TIGR01817 194 KEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSP 244 (534)
T ss_pred ccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCC
Confidence 445789999999999887765434557899999999999999999987543
No 406
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=3.9e-06 Score=68.96 Aligned_cols=58 Identities=14% Similarity=0.110 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+...-.+.+.+..++-+|++|+.-+ ...+...+..+.. ..+..+|++||+.+.+..+
T Consensus 153 Gq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tii~vTHd~~ea~~l 216 (377)
T PRK11607 153 GQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILE-RVGVTCVMVTHDQEEAMTM 216 (377)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHh
Confidence 34445568888889999999998732 1223222222211 2357899999998765443
No 407
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.29 E-value=7.7e-06 Score=61.61 Aligned_cols=59 Identities=19% Similarity=0.344 Sum_probs=38.3
Q ss_pred HHHHHhCCceEEEEEeCCCC------HH-HHHHhhcCCCCCCC-CcEEEEEeCCchhhhccCCcceEEecC
Q 039455 123 LIRWRLCRKRVLVVLDDVDQ------LE-QLQALAGNHDWFGF-GSRIIITTRDEHVLKGHGVTNIYKVRG 185 (216)
Q Consensus 123 ~l~~~l~~~~~llvlDd~~~------~~-~~~~l~~~~~~~~~-~~~il~tsr~~~~~~~~~~~~~~~l~~ 185 (216)
.+...+..++-++++|+... .. .+..++..+. .. +..+|++||+.+.... ++..+.+..
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~--~~~~~~iiiitH~~~~~~~--~d~i~~l~~ 197 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERK--SQKNFQLIVITHDEELVDA--ADHIYRVEK 197 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHH--hccCCEEEEEEecHHHHhh--CCEEEEEee
Confidence 45667778899999998842 23 3444444332 22 5679999999877653 556666543
No 408
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=5.5e-06 Score=64.34 Aligned_cols=53 Identities=11% Similarity=0.133 Sum_probs=35.0
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
....+.+.+..++-++++|+.-. ...+..++..+. .+..||++||+.+....+
T Consensus 152 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~~ 210 (249)
T PRK14253 152 QRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELK---KNYTIVIVTHSMQQARRI 210 (249)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEecCHHHHHHh
Confidence 34457777788889999998732 233444444433 246899999998765554
No 409
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=98.29 E-value=4.4e-06 Score=68.62 Aligned_cols=54 Identities=13% Similarity=0.003 Sum_probs=35.4
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...+.+.+..++-++++|+.-+ ...+.+++..+.. ..+..||++||+.+.+..+
T Consensus 172 RV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~-~~~~TII~iTHdl~e~~~l 231 (382)
T TIGR03415 172 RVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQA-KLNKTIIFVSHDLDEALKI 231 (382)
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 4457888888999999998732 2334444433320 1367899999998775543
No 410
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=2.7e-06 Score=72.81 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=36.9
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...-.+...+..++-++++|+.-+ ...+..++..+. ..+..||++||+.+.+..+
T Consensus 149 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~~~tvi~~tH~~~~~~~~ 209 (506)
T PRK13549 149 QQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLK--AHGIACIYISHKLNEVKAI 209 (506)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCcHHHHHHh
Confidence 344467888888999999998732 233444444432 2467899999998766554
No 411
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=2e-06 Score=67.82 Aligned_cols=53 Identities=26% Similarity=0.221 Sum_probs=35.5
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...+...+..++-++++|+... ...+..++..+. ..+..||++||+.+....+
T Consensus 145 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~--~~~~til~vtH~~~~~~~~ 203 (275)
T PRK13639 145 RVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLN--KEGITIIISTHDVDLVPVY 203 (275)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHHHh
Confidence 4457777888889999998732 233444444433 2367899999998766543
No 412
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.29 E-value=5.1e-06 Score=71.36 Aligned_cols=62 Identities=10% Similarity=0.104 Sum_probs=39.1
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
....+...+..++-+|++|+.-+ ...+..++..+.. ..+..||++||+.+....+ +++.+.+
T Consensus 175 qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tviivtHd~~~~~~~-~d~i~~l 242 (520)
T TIGR03269 175 QRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVK-ASGISMVLTSHWPEVIEDL-SDKAIWL 242 (520)
T ss_pred HHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHH-hcCcEEEEEeCCHHHHHHh-cCEEEEE
Confidence 34467778888899999998732 2333333333321 2367899999998876654 3444444
No 413
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=2.3e-06 Score=67.58 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=34.5
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhh
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLK 173 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~ 173 (216)
..-.+...+..++-+|++|+... ...+..++..+.. ..+..||++||+.+...
T Consensus 147 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~~~~tilivsH~~~~~~ 205 (279)
T PRK13635 147 QRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKE-QKGITVLSITHDLDEAA 205 (279)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEecCHHHHH
Confidence 34457778888899999998732 2333343333321 13688999999987665
No 414
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.29 E-value=1.8e-05 Score=59.94 Aligned_cols=61 Identities=26% Similarity=0.255 Sum_probs=45.2
Q ss_pred CCCcccccccchhHHHHHHHHHh--cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceE
Q 039455 21 FPSAVDGLVGIASRMEKMNGYLE--AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASS 81 (216)
Q Consensus 21 ~~~~~~~~vgR~~~~~~l~~~l~--~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~ 81 (216)
++.....++|-+...+.|.+.-. ..+.....|.++|..|+|||+|++++.+.+.......+
T Consensus 55 ~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLV 117 (287)
T COG2607 55 DPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLV 117 (287)
T ss_pred CCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEE
Confidence 33445678999999999877532 11233468999999999999999999998876655433
No 415
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.9e-05 Score=58.55 Aligned_cols=154 Identities=14% Similarity=0.220 Sum_probs=91.4
Q ss_pred cccccccc-hhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455 24 AVDGLVGI-ASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV 91 (216)
Q Consensus 24 ~~~~~vgR-~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
+..+.+|+ +..+++|...+..+ -.+.+-+.++||+|.|||-||+.+++.- ...|+. .+.
T Consensus 144 StYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~fir-vsg--- 214 (404)
T KOG0728|consen 144 STYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-VSG--- 214 (404)
T ss_pred cHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-ech---
Confidence 34455554 56677777765422 1356789999999999999999998743 222332 111
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH------------HH----HHHhhcCCCC
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------------EQ----LQALAGNHDW 155 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------------~~----~~~l~~~~~~ 155 (216)
.++.+.+. +. ......+.+...-+.-+.+|+.|++++. .+ +-.++..+.-
T Consensus 215 ----selvqk~i----ge------gsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldg 280 (404)
T KOG0728|consen 215 ----SELVQKYI----GE------GSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDG 280 (404)
T ss_pred ----HHHHHHHh----hh------hHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccc
Confidence 11222221 11 1223344445455567889999998754 11 2223333221
Q ss_pred --CCCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhc
Q 039455 156 --FGFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVS 200 (216)
Q Consensus 156 --~~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~ 200 (216)
..++.++|++|.-.++++. -.-+..++++|-+.+...++++-+..
T Consensus 281 featknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 281 FEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred cccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 1356678887765544332 13578899999999999999876553
No 416
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=3.9e-06 Score=67.77 Aligned_cols=56 Identities=18% Similarity=0.113 Sum_probs=36.2
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.....+...+..++-+||+|+.-. ...+..++..+.. ..+..+|++||+...+..+
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~-~~g~til~iTHdl~~~~~~ 221 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQ-ELGLSYVFISHDLSVVEHI 221 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHH-HcCCEEEEEeCCHHHHHHh
Confidence 344467888888999999998732 1233333333221 2367899999998776553
No 417
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.29 E-value=5.5e-06 Score=64.70 Aligned_cols=59 Identities=15% Similarity=0.079 Sum_probs=37.5
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+.-+ ...+..++..+. .+..||++||+.+....+ +++.+.+
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~---~~~tiiivsH~~~~~~~~-~d~i~~l 226 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLK---KDYTIVIVTHNMQQAARI-SDYTGFF 226 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHh---hCCEEEEEECCHHHHHHh-CCEEEEE
Confidence 3457777778889999998732 233444444332 257899999998776554 3444333
No 418
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.29 E-value=4e-06 Score=66.64 Aligned_cols=55 Identities=13% Similarity=0.019 Sum_probs=35.6
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
..-.+...+..++-++++|+..+ ...+..++..+.. ..+.+||++||+.+.+..+
T Consensus 152 qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~-~~g~tviiitHd~~~~~~~ 212 (290)
T PRK13634 152 RRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHK-EKGLTTVLVTHSMEDAARY 212 (290)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 34457888888999999998842 2333343333321 2367899999998765543
No 419
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.29 E-value=7.6e-06 Score=66.07 Aligned_cols=47 Identities=23% Similarity=0.166 Sum_probs=39.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
..++|++..++.+.+.+..-......|.|+|++|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 35899999999998887754455678999999999999999988753
No 420
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=98.29 E-value=1.8e-05 Score=57.54 Aligned_cols=127 Identities=16% Similarity=0.129 Sum_probs=70.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc------------cc------------------cCc-
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS------------VT------------------RGL- 95 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~------------~~------------------~~~- 95 (216)
+.+..++|.||+|+|||||+..+++..... ...+|+....... .+ +++
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~-~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~Lk 101 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLK 101 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccCCC-CceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCcccc
Confidence 346799999999999999999999854332 3344442111000 00 000
Q ss_pred -----hHHHHHHHHHH-----HhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCC
Q 039455 96 -----VPLQEQLLSEV-----LMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFG 159 (216)
Q Consensus 96 -----~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~ 159 (216)
......++.++ ....+...+..+.....+.+++-..+-++.||+.-+. .++-.+...+. ...+
T Consensus 102 L~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~-~E~~ 180 (231)
T COG3840 102 LNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC-DERK 180 (231)
T ss_pred cCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHH-HhhC
Confidence 01112222222 1222233444555666788888777778889987432 23333333221 1356
Q ss_pred cEEEEEeCCchhhhcc
Q 039455 160 SRIIITTRDEHVLKGH 175 (216)
Q Consensus 160 ~~il~tsr~~~~~~~~ 175 (216)
.++++.||.++-+..+
T Consensus 181 ~TllmVTH~~~Da~~i 196 (231)
T COG3840 181 MTLLMVTHHPEDAARI 196 (231)
T ss_pred CEEEEEeCCHHHHHHh
Confidence 7899999987665554
No 421
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.29 E-value=5.2e-06 Score=63.45 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=37.7
Q ss_pred HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
.|...|..+-+.+.++.|+|++|+|||+++.+++.........+.|++
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 355555555567799999999999999999999986655556778876
No 422
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.29 E-value=7.4e-06 Score=62.69 Aligned_cols=28 Identities=29% Similarity=0.474 Sum_probs=24.7
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|+|++|+|||||++.+++...
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 4568999999999999999999998654
No 423
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=98.29 E-value=2e-05 Score=70.09 Aligned_cols=49 Identities=20% Similarity=0.235 Sum_probs=38.5
Q ss_pred cccccchhHHHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 26 DGLVGIASRMEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..++|.++.++.+...+... ......+.++||+|+|||.+|+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999888876521 11235789999999999999999998773
No 424
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=98.28 E-value=6.2e-06 Score=71.41 Aligned_cols=59 Identities=17% Similarity=0.189 Sum_probs=39.8
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
..-.+...+..++-++++|+.- +.+.+..++..+. + .+|++||+.+.+..+ ++..+.+.
T Consensus 452 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~-tvi~vtHd~~~~~~~-~d~i~~l~ 516 (556)
T PRK11819 452 NRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP----G-CAVVISHDRWFLDRI-ATHILAFE 516 (556)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC----C-eEEEEECCHHHHHHh-CCEEEEEE
Confidence 3445777888899999999773 2344555555442 3 689999998877665 44555554
No 425
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.28 E-value=4.5e-06 Score=73.51 Aligned_cols=29 Identities=34% Similarity=0.430 Sum_probs=24.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
+.+..++|+|.+|+|||||++.+.+.+..
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 34579999999999999999999985543
No 426
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.28 E-value=6.1e-06 Score=64.49 Aligned_cols=59 Identities=12% Similarity=0.053 Sum_probs=37.4
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...+...+..++-++++|+.. ....+..++..+. .+..+|++||+.+....+ +++.+.+
T Consensus 163 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tiiivtH~~~~~~~~-~d~i~~l 227 (259)
T PRK14274 163 RLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLK---EKYTIVIVTHNMQQAARV-SDQTAFF 227 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHh---cCCEEEEEEcCHHHHHHh-CCEEEEE
Confidence 345677777888899999773 2234444444443 246799999988765544 3444444
No 427
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=98.28 E-value=1.1e-05 Score=63.87 Aligned_cols=28 Identities=29% Similarity=0.512 Sum_probs=24.7
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|.|++|+|||||++.+++.+.
T Consensus 61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~~ 88 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4568999999999999999999998654
No 428
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=98.28 E-value=3.1e-06 Score=72.37 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=37.1
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...-.+...+..++-++++|+.- ....+..++..+. ..+..||++||+.+.+..+
T Consensus 147 ~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tviiitHd~~~~~~~ 207 (500)
T TIGR02633 147 QQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLK--AHGVACVYISHKLNEVKAV 207 (500)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCcHHHHHHh
Confidence 33445777888889999999773 2234444444443 3467899999998776554
No 429
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=98.28 E-value=1.4e-05 Score=62.73 Aligned_cols=60 Identities=12% Similarity=0.026 Sum_probs=38.9
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
.-.+...+..++-++++|+.. ..+.+..++..+. .+..||++||+.+....+ +++.+.++
T Consensus 159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~---~~~tvi~vtH~~~~~~~~-~d~v~~l~ 224 (264)
T PRK14243 159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELK---EQYTIIIVTHNMQQAARV-SDMTAFFN 224 (264)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCEEEEEecCHHHHHHh-CCEEEEEe
Confidence 445677777888899999873 2244445444443 236899999998776655 45555553
No 430
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.28 E-value=7.6e-06 Score=63.66 Aligned_cols=59 Identities=17% Similarity=0.067 Sum_probs=37.1
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...+...+..++-++++|+.-+ ...+..++..+. .+..+|++||+.+....+ ++..+.+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tii~vsH~~~~~~~~-~d~i~~l 220 (252)
T PRK14255 156 RVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELR---DQYTIILVTHSMHQASRI-SDKTAFF 220 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHH---hCCEEEEEECCHHHHHHh-CCEEEEE
Confidence 4457777788889999998732 233444444332 236799999998776554 3344333
No 431
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.5e-05 Score=68.74 Aligned_cols=162 Identities=17% Similarity=0.153 Sum_probs=92.4
Q ss_pred cccccchhHHHHHHHHHh-------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455 26 DGLVGIASRMEKMNGYLE-------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~-------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (216)
...+|.++.+..+.+.+. .+..-..+..+.||.|+|||-||+.++..+-..-...+-++ ++...+.
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~Ek------ 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEYMEK------ 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHHHHH------
Confidence 467999999988877654 12233468889999999999999999997743212222222 3321111
Q ss_pred HHHHHHHHHhhccccccchhhhHHHHHHHhCCceE-EEEEeCCCC--HHHHHHhhcCCCCC-----------CCCcEEEE
Q 039455 99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRV-LVVLDDVDQ--LEQLQALAGNHDWF-----------GFGSRIII 164 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-llvlDd~~~--~~~~~~l~~~~~~~-----------~~~~~il~ 164 (216)
--.+.+.+..+ .....+. -..+-.....+|| +|+||+++. .+-+.-|+..+.+- ..++-||+
T Consensus 564 --HsVSrLIGaPP-GYVGyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIIm 639 (786)
T COG0542 564 --HSVSRLIGAPP-GYVGYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIM 639 (786)
T ss_pred --HHHHHHhCCCC-CCceecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEE
Confidence 12233333332 2222222 3445556667877 888999963 34444444443311 13456677
Q ss_pred EeCCchh--hhc-----------------------c-----C-CcceEEecCCChHHHHHHHhhh
Q 039455 165 TTRDEHV--LKG-----------------------H-----G-VTNIYKVRGLDYVEALQLFHLK 198 (216)
Q Consensus 165 tsr~~~~--~~~-----------------------~-----~-~~~~~~l~~l~~~~~~~ll~~~ 198 (216)
||....- ... + + .+..+...||+.+...+++...
T Consensus 640 TSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~ 704 (786)
T COG0542 640 TSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQ 704 (786)
T ss_pred ecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHH
Confidence 8764210 000 0 0 2457888888887777776543
No 432
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=98.28 E-value=8.5e-06 Score=63.63 Aligned_cols=28 Identities=21% Similarity=0.341 Sum_probs=24.5
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+.+++|.|++|+|||||++.+++...
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3468999999999999999999998654
No 433
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=5.8e-06 Score=64.30 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=24.4
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+.+++|.|++|+|||||++.+++...
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 3568999999999999999999998543
No 434
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.27 E-value=9.1e-06 Score=69.21 Aligned_cols=60 Identities=32% Similarity=0.487 Sum_probs=47.2
Q ss_pred CCcccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 83 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~ 83 (216)
|....++.-....++++..||... ....++++|+||+|+||||+++.++..+. +...-|.
T Consensus 15 P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~ 77 (519)
T PF03215_consen 15 PKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI 77 (519)
T ss_pred CCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence 555667788888999999998743 33457999999999999999999998763 5556665
No 435
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.27 E-value=2.5e-06 Score=67.52 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=24.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|.|++|+|||||++.+++.+.
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~~ 58 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLINGLLL 58 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence 3468999999999999999999998654
No 436
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.27 E-value=2.8e-06 Score=68.64 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=29.3
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 83 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~ 83 (216)
++..+.|+|.+|+||||+++-+-+-++.+.....|=
T Consensus 348 rGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ld 383 (546)
T COG4615 348 RGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLD 383 (546)
T ss_pred cCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeEC
Confidence 467999999999999999999988777665555553
No 437
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.27 E-value=1.2e-05 Score=63.30 Aligned_cols=106 Identities=14% Similarity=0.098 Sum_probs=66.8
Q ss_pred HHHHHHHHHhcC-CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC-----ceEeeccccccccccCchHHHHHHHHHHH
Q 039455 34 RMEKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE-----ASSFLANVREVSVTRGLVPLQEQLLSEVL 107 (216)
Q Consensus 34 ~~~~l~~~l~~~-~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 107 (216)
.++.|..++..+ ...-+.+.|+|++|.|||++++.+....-..++ ..+++. ......+...+...++..+.
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~v---q~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYV---QMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEE---ecCCCCChHHHHHHHHHHhC
Confidence 444566666654 444579999999999999999999975432221 112211 13335667778888888877
Q ss_pred hhccccccchhhhHHHHHHHhCC-ceEEEEEeCCCCH
Q 039455 108 MERNLIIWDVHKGINLIRWRLCR-KRVLVVLDDVDQL 143 (216)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~~l~~-~~~llvlDd~~~~ 143 (216)
...... .+...+.......+.. +.-+||||++.+.
T Consensus 122 aP~~~~-~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 122 APYRPR-DRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred cccCCC-CCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 664332 3334444444455543 5669999999653
No 438
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.27 E-value=9.1e-06 Score=63.24 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=24.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..+.+++|+|++|+|||||++.+++..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 346799999999999999999999865
No 439
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.27 E-value=3.5e-06 Score=72.52 Aligned_cols=28 Identities=32% Similarity=0.367 Sum_probs=24.5
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+.+..++|+|++|+|||||++.+.+.+.
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4568999999999999999999987554
No 440
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=98.27 E-value=4.3e-06 Score=71.82 Aligned_cols=62 Identities=13% Similarity=0.078 Sum_probs=39.7
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
.-.+...+..++-+|++|+.- ....+..++..+.. ..+..||++||+.+.+..+ ++..+.+.
T Consensus 435 rv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tvi~vsHd~~~~~~~-~d~i~~l~ 502 (520)
T TIGR03269 435 RVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKARE-EMEQTFIIVSHDMDFVLDV-CDRAALMR 502 (520)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-HcCcEEEEEeCCHHHHHHh-CCEEEEEE
Confidence 445777888899999999873 22334444433221 2367899999998877665 44555543
No 441
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=98.27 E-value=6.4e-06 Score=64.06 Aligned_cols=59 Identities=10% Similarity=0.021 Sum_probs=36.4
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+...+..++-++++|+.-. ...+..++..+. .+..||++||+.+....+ ++..+.+
T Consensus 156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tii~~sH~~~~~~~~-~d~i~~l 220 (252)
T PRK14239 156 RVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLK---DDYTMLLVTRSMQQASRI-SDRTGFF 220 (252)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHh---hCCeEEEEECCHHHHHHh-CCEEEEE
Confidence 3356777778888999998732 234444444432 246799999998765443 3343333
No 442
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3e-05 Score=67.49 Aligned_cols=151 Identities=19% Similarity=0.164 Sum_probs=83.0
Q ss_pred CCccccccc-chhHHHHHHHHHh----------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc
Q 039455 22 PSAVDGLVG-IASRMEKMNGYLE----------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS 90 (216)
Q Consensus 22 ~~~~~~~vg-R~~~~~~l~~~l~----------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (216)
|...++=|| -++...+|.+-+. .+-.+.+-|.++||+|+|||-||++++-++.-.| ++.-
T Consensus 667 PnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F-----lSVK---- 737 (953)
T KOG0736|consen 667 PNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF-----LSVK---- 737 (953)
T ss_pred CccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE-----Eeec----
Confidence 334444444 4444445655443 2234478999999999999999999998765332 2211
Q ss_pred cccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH---------------HHHHHhhcCC--
Q 039455 91 VTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL---------------EQLQALAGNH-- 153 (216)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~---------------~~~~~l~~~~-- 153 (216)
+. +++....++ +.+-..+-+.++-...||+|+||++|++ .-+.+++..+
T Consensus 738 ---GP-----ELLNMYVGq------SE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDg 803 (953)
T KOG0736|consen 738 ---GP-----ELLNMYVGQ------SEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDG 803 (953)
T ss_pred ---CH-----HHHHHHhcc------hHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhc
Confidence 11 222221111 1222344455555678999999999765 1234444333
Q ss_pred -CC-CCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHH
Q 039455 154 -DW-FGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLF 195 (216)
Q Consensus 154 -~~-~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll 195 (216)
.+ ...+..||-+|.-+++++. + ..+.-+.+.+=...+...=.
T Consensus 804 ls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~v 852 (953)
T KOG0736|consen 804 LSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRV 852 (953)
T ss_pred ccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHH
Confidence 22 2234455556655555433 1 24566777776665554433
No 443
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.27 E-value=1.8e-06 Score=75.21 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=24.8
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
+.+..++|+|++|+|||||++.+++.+..
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 34678999999999999999999986543
No 444
>PRK04296 thymidine kinase; Provisional
Probab=98.26 E-value=2.4e-06 Score=63.60 Aligned_cols=113 Identities=19% Similarity=0.134 Sum_probs=60.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhcc-ccccchhhhHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERN-LIIWDVHKGINLIRWR 127 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~ 127 (216)
+.+++++|+.|+||||++..++.+...+...+.++. . ......... .++..+..... ............+..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~~~~~~----~i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDDRYGEG----KVVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-cccccccCC----cEecCCCCcccceEeCChHHHHHHHHh-
Confidence 368899999999999999999988765544444331 1 000011111 11111110000 001122222333333
Q ss_pred hCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch
Q 039455 128 LCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH 170 (216)
Q Consensus 128 l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~ 170 (216)
..++.-+|++|++... +++..+...+. ..+..+++|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 2334568999999654 33554544433 46788999999844
No 445
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=98.26 E-value=3e-06 Score=73.83 Aligned_cols=28 Identities=29% Similarity=0.441 Sum_probs=24.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|+|++|+|||||++.+.+.+.
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3568999999999999999999998654
No 446
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.26 E-value=3.8e-06 Score=71.80 Aligned_cols=54 Identities=17% Similarity=0.221 Sum_probs=37.1
Q ss_pred hHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
..-.+...+..++-++++|+.- ....+..++..+. ..+..+|++||+.+....+
T Consensus 402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~g~tviivtHd~~~~~~~ 461 (501)
T PRK10762 402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFK--AEGLSIILVSSEMPEVLGM 461 (501)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHH--HCCCEEEEEcCCHHHHHhh
Confidence 3445777888889999999773 2344555554443 3467899999998776554
No 447
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.26 E-value=1.6e-05 Score=60.46 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=39.4
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHH--hhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQA--LAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~--l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
...-.+...+..++-++++|+... .+.+.. ++..+. ..+..+|++||+..... . +++.+.+.
T Consensus 146 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~--~~~~tii~~sH~~~~~~-~-~d~i~~l~ 215 (218)
T cd03290 146 RQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQ--DDKRTLVLVTHKLQYLP-H-ADWIIAMK 215 (218)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHh--cCCCEEEEEeCChHHHh-h-CCEEEEec
Confidence 334457788888999999998732 222222 333332 34678999999987764 3 55655553
No 448
>PHA00729 NTP-binding motif containing protein
Probab=98.26 E-value=7.5e-06 Score=62.00 Aligned_cols=26 Identities=31% Similarity=0.197 Sum_probs=23.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
-..++|+|++|+||||||..++.++.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999998753
No 449
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.26 E-value=1.3e-05 Score=62.59 Aligned_cols=59 Identities=14% Similarity=0.001 Sum_probs=37.6
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...+...+..++-++++|+.- ....+..++..+. .+..||++||+.+....+ +++.+-+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~~~tiii~tH~~~~i~~~-~d~i~~l 222 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLR---SELTIAIVTHNMQQATRV-SDFTAFF 222 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---cCCEEEEEeCCHHHHHHh-cCeEEEE
Confidence 345777777888899999873 2233444443333 246899999998776654 3444444
No 450
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=98.25 E-value=4.1e-06 Score=72.09 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=24.4
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+.+..++|+|++|+|||||++.+.+.+.
T Consensus 346 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 346 PPGERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4568999999999999999999988544
No 451
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=98.25 E-value=3.4e-06 Score=65.53 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..+.+++|.|++|+|||||++.+++..
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 346899999999999999999998753
No 452
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=98.25 E-value=6.5e-06 Score=64.55 Aligned_cols=28 Identities=36% Similarity=0.599 Sum_probs=24.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|.|++|+|||||++.+++.+.
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4568999999999999999999998543
No 453
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.25 E-value=1.6e-05 Score=60.29 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=20.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLY 70 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~ 70 (216)
+..++|+|++|+|||||++.+.
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~ 49 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAIT 49 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHhe
Confidence 5699999999999999999987
No 454
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=98.25 E-value=6e-06 Score=64.28 Aligned_cols=55 Identities=24% Similarity=0.182 Sum_probs=35.3
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
..-.+...+..++-++++|+.-+ .+.+..++..+.. ..+..+|++||+.+....+
T Consensus 155 qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~~tii~vsH~~~~~~~~ 215 (253)
T TIGR02323 155 QRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVR-DLGLAVIIVTHDLGVARLL 215 (253)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 34457778888999999998732 2333333332210 2367899999998776653
No 455
>PHA02244 ATPase-like protein
Probab=98.25 E-value=9.3e-06 Score=65.72 Aligned_cols=51 Identities=12% Similarity=0.080 Sum_probs=34.9
Q ss_pred cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
....|+|...........+..--.....+.|+||+|+|||+||+.++..+.
T Consensus 94 ~d~~~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~lg 144 (383)
T PHA02244 94 IDTTKIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEALD 144 (383)
T ss_pred CCCcccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 345678877766544332221112235788999999999999999998754
No 456
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.25 E-value=6e-06 Score=64.97 Aligned_cols=28 Identities=36% Similarity=0.501 Sum_probs=24.4
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+.+++|.|++|+|||||++.+++.+.
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3467999999999999999999998654
No 457
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=98.24 E-value=3e-06 Score=67.02 Aligned_cols=53 Identities=13% Similarity=0.080 Sum_probs=34.6
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKG 174 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~ 174 (216)
...+...+..++-++++|+..+ ...+..++..+.. ..+..||++||+.+....
T Consensus 152 rv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tillvtH~~~~~~~ 210 (280)
T PRK13633 152 RVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK-KYGITIILITHYMEEAVE 210 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecChHHHhc
Confidence 4457777888899999997732 2334444433321 236789999999877653
No 458
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.24 E-value=9.1e-06 Score=63.44 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=38.3
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.-.+.+.+..++-++++|+... .+.+..++..+. .+..||++||+......+ +++.+.+
T Consensus 161 rl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tiilvsh~~~~~~~~-~d~v~~l 225 (257)
T PRK14246 161 RLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELK---NEIAIVIVSHNPQQVARV-ADYVAFL 225 (257)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHh---cCcEEEEEECCHHHHHHh-CCEEEEE
Confidence 3356777778889999998732 244555554443 247899999998876554 3343333
No 459
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.24 E-value=6.4e-06 Score=65.00 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.5
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|.|++|+|||||++.+++...
T Consensus 45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 45 PARAVTSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3568999999999999999999998654
No 460
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=98.24 E-value=6.7e-06 Score=71.12 Aligned_cols=131 Identities=14% Similarity=0.165 Sum_probs=70.7
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecc---ccccccc-------cCchHH----------------HH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN---VREVSVT-------RGLVPL----------------QE 100 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~---~~~~~~~-------~~~~~~----------------~~ 100 (216)
..+.+++|.|++|+|||||++.+++..... .+.+++.. .+..... ...... ..
T Consensus 346 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~-~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 424 (552)
T TIGR03719 346 PPGGIVGVIGPNGAGKSTLFRMITGQEQPD-SGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSR 424 (552)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCCC-CeEEEECCceEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHH
Confidence 346799999999999999999999865432 12111110 0000000 011000 11
Q ss_pred HHHHHHHhhc------cccccchhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455 101 QLLSEVLMER------NLIIWDVHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRD 168 (216)
Q Consensus 101 ~l~~~~~~~~------~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~ 168 (216)
.++..+.-.. ....+..+...-.+...+..++-++++|+.- ....+..++..+. + .||++||+
T Consensus 425 ~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~----~-~viivsHd 499 (552)
T TIGR03719 425 AYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA----G-CAVVISHD 499 (552)
T ss_pred HHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC----C-eEEEEeCC
Confidence 1222211100 0111222333445778888899999999873 2244555554442 3 69999999
Q ss_pred chhhhccCCcceEEec
Q 039455 169 EHVLKGHGVTNIYKVR 184 (216)
Q Consensus 169 ~~~~~~~~~~~~~~l~ 184 (216)
.+.+..+ ++..+.+.
T Consensus 500 ~~~~~~~-~d~i~~l~ 514 (552)
T TIGR03719 500 RWFLDRI-ATHILAFE 514 (552)
T ss_pred HHHHHHh-CCEEEEEE
Confidence 9877665 44555553
No 461
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.24 E-value=1.4e-05 Score=62.22 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=34.4
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.-.+...+..++-++++|+... ...+..++..+. .+..||++||+.+....+
T Consensus 157 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~---~~~tiiiisH~~~~~~~~ 214 (251)
T PRK14244 157 RLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK---KNFTIIVVTHSMKQAKKV 214 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHhh
Confidence 3356777778888999998732 233444443332 367899999998766543
No 462
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.24 E-value=8.1e-06 Score=66.83 Aligned_cols=49 Identities=29% Similarity=0.310 Sum_probs=36.3
Q ss_pred HHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 36 EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 36 ~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
..|.+.|..+-..+.++.|.|++|+|||||+.+++.........+.|++
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3455555544455789999999999999999999987655444566664
No 463
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.24 E-value=6.6e-06 Score=62.02 Aligned_cols=52 Identities=27% Similarity=0.356 Sum_probs=42.3
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
|....+.||.++-++++.-.... .+-+.++|.||+|+||||-+..+++.+-.
T Consensus 23 P~~l~dIVGNe~tv~rl~via~~--gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 23 PSVLQDIVGNEDTVERLSVIAKE--GNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred chHHHHhhCCHHHHHHHHHHHHc--CCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 33456789999999998887665 45689999999999999999999886543
No 464
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=98.24 E-value=1.8e-05 Score=61.73 Aligned_cols=61 Identities=8% Similarity=0.140 Sum_probs=39.1
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+...-.+...+..++-++++|+.-. .+.+..++... ..+..||++||+.+.... ++..+.+
T Consensus 161 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~---~~~~tiii~sh~~~~~~~--~dri~~l 227 (257)
T cd03288 161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTA---FADRTVVTIAHRVSTILD--ADLVLVL 227 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---cCCCEEEEEecChHHHHh--CCEEEEE
Confidence 3334457888888999999998732 23344444333 236789999999877654 4554444
No 465
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.24 E-value=2.5e-06 Score=69.38 Aligned_cols=42 Identities=19% Similarity=0.100 Sum_probs=33.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcC-CCCceEeeccccc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVRE 88 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~-~~~~~~~~~~~~~ 88 (216)
..+...+|+||+|+|||||++.+++.+.. +|+...|+...+.
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgE 209 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDE 209 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCC
Confidence 35678999999999999999999997654 5777788864433
No 466
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.24 E-value=1e-05 Score=58.25 Aligned_cols=61 Identities=10% Similarity=0.121 Sum_probs=45.5
Q ss_pred ccchhhhHHHHHHHhCCceEEEEEeCC----C--CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 114 IWDVHKGINLIRWRLCRKRVLVVLDDV----D--QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 114 ~~~~~~~~~~l~~~l~~~~~llvlDd~----~--~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+..+.....+.+.+...|-+++=|+. | .-+.+.+++..++. ..|.+.++.||++.++.++
T Consensus 147 LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnr-e~G~TlVlVTHD~~LA~Rc 213 (228)
T COG4181 147 LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR-ERGTTLVLVTHDPQLAARC 213 (228)
T ss_pred cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhh-hcCceEEEEeCCHHHHHhh
Confidence 344556677899999999999999976 2 22557777765542 4678899999999888775
No 467
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=98.23 E-value=2.2e-05 Score=61.51 Aligned_cols=119 Identities=14% Similarity=0.071 Sum_probs=68.4
Q ss_pred HHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhcccc
Q 039455 34 RMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLI 113 (216)
Q Consensus 34 ~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 113 (216)
.++.|..++... ...++|.|+.|+||||+++.+...+......++.+.+.... .+... ......
T Consensus 68 ~~~~l~~~~~~~---~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~----~~~~~---------~q~~v~ 131 (264)
T cd01129 68 NLEIFRKLLEKP---HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEY----QIPGI---------NQVQVN 131 (264)
T ss_pred HHHHHHHHHhcC---CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCcee----cCCCc---------eEEEeC
Confidence 344455555432 36899999999999999999988765422223333221111 11000 000001
Q ss_pred ccchhhhHHHHHHHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchh
Q 039455 114 IWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHV 171 (216)
Q Consensus 114 ~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~ 171 (216)
..........+...+...+-+++++++...+....++.... .|..++-|.|..+.
T Consensus 132 ~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~~aa~---tGh~v~tTlHa~~~ 186 (264)
T cd01129 132 EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAVQAAL---TGHLVLSTLHTNDA 186 (264)
T ss_pred CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHHHHHH---cCCcEEEEeccCCH
Confidence 11112345667788888999999999988876655443322 34446777776544
No 468
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=3.8e-06 Score=66.08 Aligned_cols=28 Identities=36% Similarity=0.668 Sum_probs=24.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+.+++|.|++|+|||||++.+++...
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4568999999999999999999998543
No 469
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.23 E-value=7.8e-06 Score=66.48 Aligned_cols=110 Identities=14% Similarity=0.165 Sum_probs=63.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL 128 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 128 (216)
...++|+|++|+||||+++.+...+.......++.. .+ ........ ...+....... .+.......+...+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~ti--Ed-----p~E~~~~~-~~~~i~q~evg-~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITI--ED-----PIEYVHRN-KRSLINQREVG-LDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEE--cC-----ChhhhccC-ccceEEccccC-CCCcCHHHHHHHhh
Confidence 478999999999999999999987765433333331 11 10000000 00000000000 11223455677888
Q ss_pred CCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCch
Q 039455 129 CRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEH 170 (216)
Q Consensus 129 ~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~ 170 (216)
...+-+|++|++...+.+...+... ..|..++.|.|..+
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~~ 231 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTNS 231 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCCC
Confidence 8999999999998766655433321 34566888888753
No 470
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=1.8e-05 Score=68.30 Aligned_cols=166 Identities=19% Similarity=0.164 Sum_probs=97.1
Q ss_pred ccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455 25 VDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR 93 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (216)
..+.-|..+..+.+.+.+.-+ -....-|.++||+|+|||.||-+++.... ..+++.-
T Consensus 666 w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~-----~~fisvK------- 733 (952)
T KOG0735|consen 666 WEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSN-----LRFISVK------- 733 (952)
T ss_pred ceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCC-----eeEEEec-------
Confidence 445667777666676655422 22456899999999999999999987543 2233311
Q ss_pred CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCCC--CCCC
Q 039455 94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNHD--WFGF 158 (216)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~--~~~~ 158 (216)
+. +++....+. +.+.....+.++-.-+||+|+||+++++ .-+.+++-.+. ..-.
T Consensus 734 GP-----ElL~KyIGa------SEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~ 802 (952)
T KOG0735|consen 734 GP-----ELLSKYIGA------SEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLD 802 (952)
T ss_pred CH-----HHHHHHhcc------cHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccc
Confidence 11 222221111 2233444556666679999999999765 12455554442 1114
Q ss_pred CcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcC-CCCCchhHhhhc
Q 039455 159 GSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSK-GKQPTDDRVELS 213 (216)
Q Consensus 159 ~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~-~~~~~~~~~~l~ 213 (216)
|..|+.+|.-+++.+. + ..++.+..+.-++.+..++|+...-. ..+.+-+++-+|
T Consensus 803 GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a 863 (952)
T KOG0735|consen 803 GVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLA 863 (952)
T ss_pred eEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHh
Confidence 5666655544444222 1 24677778888888999999876532 223333444444
No 471
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=98.23 E-value=3.7e-06 Score=72.04 Aligned_cols=62 Identities=13% Similarity=0.146 Sum_probs=40.7
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...-.+...+..++-++++|+.- ..+.+..++..+. ..+..||++||+......+ ++..+.+
T Consensus 415 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~--~~g~tvi~vsHd~~~~~~~-~d~i~~l 482 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLA--DDGKVILMVSSELPEIITV-CDRIAVF 482 (510)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHH--HCCCEEEEEcCCHHHHHhh-CCEEEEE
Confidence 34446778888889999999773 2344445554443 2467899999998776654 3444444
No 472
>PLN03073 ABC transporter F family; Provisional
Probab=98.23 E-value=8.1e-06 Score=72.39 Aligned_cols=131 Identities=18% Similarity=0.205 Sum_probs=69.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceE--------eeccc--cccccccC------------chHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASS--------FLANV--REVSVTRG------------LVPLQEQLLS 104 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~--------~~~~~--~~~~~~~~------------~~~~~~~l~~ 104 (216)
..+..++|+|++|+|||||++.+++.+......+. |+.-. ........ .......++.
T Consensus 533 ~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~ 612 (718)
T PLN03073 533 DLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLG 612 (718)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHH
Confidence 34679999999999999999999986543211111 11100 00000000 0001111222
Q ss_pred HHHhh------ccccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhh
Q 039455 105 EVLME------RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVL 172 (216)
Q Consensus 105 ~~~~~------~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~ 172 (216)
.+... .....+..+...-.+...+..++-+|++|+.-+ .+.+...+..+ . ..||++||+..+.
T Consensus 613 ~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~----~-gtvIivSHd~~~i 687 (718)
T PLN03073 613 SFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF----Q-GGVLMVSHDEHLI 687 (718)
T ss_pred HCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc----C-CEEEEEECCHHHH
Confidence 21110 001122233344467888888999999998732 22333333222 2 3799999999887
Q ss_pred hccCCcceEEe
Q 039455 173 KGHGVTNIYKV 183 (216)
Q Consensus 173 ~~~~~~~~~~l 183 (216)
..+ ++..+.+
T Consensus 688 ~~~-~drv~~l 697 (718)
T PLN03073 688 SGS-VDELWVV 697 (718)
T ss_pred HHh-CCEEEEE
Confidence 765 4444444
No 473
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=0.00011 Score=59.02 Aligned_cols=144 Identities=16% Similarity=0.113 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC------------------CceEeec-cccccccc
Q 039455 32 ASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------------------EASSFLA-NVREVSVT 92 (216)
Q Consensus 32 ~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~------------------~~~~~~~-~~~~~~~~ 92 (216)
+...+.+.+.+..+ .-...+.++|+.|+||+++|..++..+--.- |...|+. ...+
T Consensus 10 ~~~~~~l~~~~~~~-rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~---- 84 (319)
T PRK08769 10 QRAYDQTVAALDAG-RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNR---- 84 (319)
T ss_pred HHHHHHHHHHHHcC-CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCc----
Confidence 34455666665543 3345799999999999999999998543211 1111110 0000
Q ss_pred cCchHHHHHHHHHHHhhccccccchhhhHHHHH---HHh-----CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEE
Q 039455 93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIR---WRL-----CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRI 162 (216)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~---~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~i 162 (216)
..........++.++ +.+ .++.-++|||+++.. .....++..+..=..++.+
T Consensus 85 ------------------~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~f 146 (319)
T PRK08769 85 ------------------TGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYL 146 (319)
T ss_pred ------------------ccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeE
Confidence 000000001122222 211 235579999999855 4455566555433456667
Q ss_pred EEEeCCc-hhhhcc-CCcceEEecCCChHHHHHHHhhh
Q 039455 163 IITTRDE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLK 198 (216)
Q Consensus 163 l~tsr~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~ 198 (216)
|++|+.+ .+...+ ..-..+.+.+++.+++.+.+...
T Consensus 147 iL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~ 184 (319)
T PRK08769 147 WLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQ 184 (319)
T ss_pred EEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHc
Confidence 7777654 344343 23477899999999999888754
No 474
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.23 E-value=3.7e-06 Score=66.12 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.4
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|.|++|+|||||++.+++.+.
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3568999999999999999999998543
No 475
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=6.9e-06 Score=66.47 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=35.5
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...+...+..++-+||+|+.-+ ...+..++..+.. ..+..||++||+...+..+
T Consensus 166 Rv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~-~~g~tii~itHdl~~v~~~ 225 (330)
T PRK15093 166 KVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQ-NNNTTILLISHDLQMLSQW 225 (330)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-hcCCEEEEEECCHHHHHHh
Confidence 3457778888899999998732 2333444433321 2367899999998776553
No 476
>PLN03073 ABC transporter F family; Provisional
Probab=98.22 E-value=1e-05 Score=71.75 Aligned_cols=50 Identities=14% Similarity=0.119 Sum_probs=34.7
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...+...+..++-+|+||+..+ ...+..++..+ +..+|++||+..++...
T Consensus 352 rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----~~tviivsHd~~~l~~~ 407 (718)
T PLN03073 352 RIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-----PKTFIVVSHAREFLNTV 407 (718)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc-----CCEEEEEECCHHHHHHh
Confidence 3357777778889999998742 23444444443 46799999998876654
No 477
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.22 E-value=6e-06 Score=60.16 Aligned_cols=46 Identities=24% Similarity=0.317 Sum_probs=34.9
Q ss_pred cccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 28 LVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 28 ~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
++|.+..++++.+.+..-......|.|+|++|+||+.+|+.+.+..
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s 46 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNS 46 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhh
Confidence 4788889999888776443444789999999999999999998743
No 478
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.22 E-value=9e-06 Score=63.22 Aligned_cols=28 Identities=21% Similarity=0.417 Sum_probs=24.4
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|+|++|+|||||++.+++.+.
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 3457999999999999999999998653
No 479
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.22 E-value=7.6e-06 Score=64.94 Aligned_cols=56 Identities=11% Similarity=0.095 Sum_probs=36.4
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.....+...+..++-+|++|+.-. ...+..++..+.. ..+..||++||+.+.+..+
T Consensus 150 ~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd~~~~~~~ 211 (287)
T PRK13637 150 KRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHK-EYNMTIILVSHSMEDVAKL 211 (287)
T ss_pred HHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 334467888888999999998732 2334444443321 2367899999998765443
No 480
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=98.22 E-value=1.2e-05 Score=63.22 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.5
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+.+++|+|++|+|||||++.+++...
T Consensus 49 ~~Ge~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 49 PKNRVTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3568999999999999999999988643
No 481
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=2.1e-05 Score=60.03 Aligned_cols=152 Identities=19% Similarity=0.236 Sum_probs=84.6
Q ss_pred ccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCc
Q 039455 27 GLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGL 95 (216)
Q Consensus 27 ~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (216)
..=|-+-..+++...+..+ -+-.+-+.++||+|+|||.|++.+++.-...|- ..+ +
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~fi--rvv---g-------- 222 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFI--RVV---G-------- 222 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhee--eec---c--------
Confidence 3446666666676654321 123578999999999999999999986543331 111 1
Q ss_pred hHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH------------HHHHH----hhcCCC--CCC
Q 039455 96 VPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------------EQLQA----LAGNHD--WFG 157 (216)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------------~~~~~----l~~~~~--~~~ 157 (216)
.++.....+. ...+....++-.-++.+.++++|+++.. .+++. ++..+. +..
T Consensus 223 ----sefvqkylge------gprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~ 292 (408)
T KOG0727|consen 223 ----SEFVQKYLGE------GPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT 292 (408)
T ss_pred ----HHHHHHHhcc------CcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc
Confidence 1222221111 1223344444455567899999988654 12222 222221 123
Q ss_pred CCcEEEEEeCCchh-----hhccCCcceEEecCCChHHHHHHHhhhhcC
Q 039455 158 FGSRIIITTRDEHV-----LKGHGVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 158 ~~~~il~tsr~~~~-----~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
.+.++|++|.-.+. +.--..+..++++--+..+-+-.|......
T Consensus 293 ~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titsk 341 (408)
T KOG0727|consen 293 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSK 341 (408)
T ss_pred cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhc
Confidence 45677776654322 111135678888866666777677655433
No 482
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.22 E-value=5.1e-06 Score=72.45 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=24.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
+.+..++|+|++|+|||||++.+.+.+
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456899999999999999999998866
No 483
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=98.22 E-value=2.8e-06 Score=73.77 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=39.5
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
.+...-.+.+.+-.++-++++|+.-+ .+.+...+..+ .++..+|+.||+...... +++.+.++
T Consensus 473 GqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~---~~~~tiIiitH~~~~~~~--~D~ii~l~ 541 (571)
T TIGR02203 473 GQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERL---MQGRTTLVIAHRLSTIEK--ADRIVVMD 541 (571)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH---hCCCEEEEEehhhHHHHh--CCEEEEEe
Confidence 34444567888888889999998732 12233323222 246788899998876655 45666553
No 484
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.21 E-value=8.5e-06 Score=64.33 Aligned_cols=52 Identities=8% Similarity=0.091 Sum_probs=33.8
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhh
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLK 173 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~ 173 (216)
...+...+..++-++++|+..+ ...+..++..+.. ..+..||++||+.....
T Consensus 148 rv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tiil~sH~~~~~~ 205 (277)
T PRK13642 148 RVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKE-KYQLTVLSITHDLDEAA 205 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHH
Confidence 3457777888888999998732 2333333333320 23678999999987764
No 485
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=1.7e-05 Score=65.14 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=73.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL 128 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l 128 (216)
.+-..++||||+|||+++.++++.+. |.. +--.+... .... + ++.+|
T Consensus 235 KRGYLLYGPPGTGKSS~IaAmAn~L~--ydI--ydLeLt~v----~~n~---------------------d----Lr~LL 281 (457)
T KOG0743|consen 235 KRGYLLYGPPGTGKSSFIAAMANYLN--YDI--YDLELTEV----KLDS---------------------D----LRHLL 281 (457)
T ss_pred hccceeeCCCCCCHHHHHHHHHhhcC--Cce--EEeeeccc----cCcH---------------------H----HHHHH
Confidence 46789999999999999999998763 321 11101110 0000 0 22222
Q ss_pred C--CceEEEEEeCCCCH--------H---H---------HHHhhcC----CCCCCCCcEEEEEeCCchhhhc--c---CC
Q 039455 129 C--RKRVLVVLDDVDQL--------E---Q---------LQALAGN----HDWFGFGSRIIITTRDEHVLKG--H---GV 177 (216)
Q Consensus 129 ~--~~~~llvlDd~~~~--------~---~---------~~~l~~~----~~~~~~~~~il~tsr~~~~~~~--~---~~ 177 (216)
. ..+-+|||.|+|.. + . +.-++.. .+.|+..--|++||...+-++. + ..
T Consensus 282 ~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRm 361 (457)
T KOG0743|consen 282 LATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRM 361 (457)
T ss_pred HhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcc
Confidence 2 24557777777532 0 0 1112211 1223322245678775432221 1 35
Q ss_pred cceEEecCCChHHHHHHHhhhhcCCCCCchhHhhhcc
Q 039455 178 TNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSK 214 (216)
Q Consensus 178 ~~~~~l~~l~~~~~~~ll~~~~~~~~~~~~~~~~l~~ 214 (216)
+..+.+..=+.++...|+.++...+. +++.+.+|.+
T Consensus 362 DmhI~mgyCtf~~fK~La~nYL~~~~-~h~L~~eie~ 397 (457)
T KOG0743|consen 362 DMHIYMGYCTFEAFKTLASNYLGIEE-DHRLFDEIER 397 (457)
T ss_pred eeEEEcCCCCHHHHHHHHHHhcCCCC-CcchhHHHHH
Confidence 67899999999999999999886644 4555555543
No 486
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.21 E-value=1.1e-05 Score=64.03 Aligned_cols=54 Identities=9% Similarity=0.125 Sum_probs=35.7
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...-.+...+..++-+|++|+.- ....+..++..+. . +..||++||+.+....+
T Consensus 186 ~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~--~-~~tiii~tH~~~~i~~~ 245 (285)
T PRK14254 186 QQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELA--E-EYTVVIVTHNMQQAARI 245 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHh--c-CCEEEEEeCCHHHHHhh
Confidence 33445777788889999999873 2234444444443 2 35799999998776554
No 487
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.20 E-value=1.9e-05 Score=59.42 Aligned_cols=29 Identities=28% Similarity=0.493 Sum_probs=25.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
+.+.+++|.|++|+|||||++.+++..+.
T Consensus 27 ~~Geiv~llG~NGaGKTTlLkti~Gl~~~ 55 (237)
T COG0410 27 ERGEIVALLGRNGAGKTTLLKTIMGLVRP 55 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 45689999999999999999999986553
No 488
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.20 E-value=7.5e-06 Score=60.56 Aligned_cols=33 Identities=24% Similarity=0.218 Sum_probs=26.7
Q ss_pred EEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 52 IGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 52 i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
++|.|++|+|||+|+.+++......-..+.|++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 689999999999999999876544456677775
No 489
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=9.4e-05 Score=59.86 Aligned_cols=141 Identities=17% Similarity=0.088 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC---------------------CceEeecccccccc
Q 039455 33 SRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF---------------------EASSFLANVREVSV 91 (216)
Q Consensus 33 ~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~ 91 (216)
..-+++.+.+..+ .-...+.++|+.|+||+++|..++..+--.- |.+.++.-
T Consensus 9 ~~~~~l~~~~~~~-rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p------ 81 (334)
T PRK07993 9 PDYEQLVGSYQAG-RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP------ 81 (334)
T ss_pred HHHHHHHHHHHcC-CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec------
Confidence 3445565655543 3357888999999999999999998653211 11111110
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHH-----hCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEE
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWR-----LCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIII 164 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~-----l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~ 164 (216)
......-..+...+ +.+. ..++.-++|||+++.. .....+++.+..=..+..+|+
T Consensus 82 -----------------~~~~~~I~idqiR~-l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL 143 (334)
T PRK07993 82 -----------------EKGKSSLGVDAVRE-VTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFL 143 (334)
T ss_pred -----------------ccccccCCHHHHHH-HHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEE
Confidence 00000011111111 1111 2345679999999855 456666665543345566666
Q ss_pred EeCCc-hhhhcc-CCcceEEecCCChHHHHHHHhhh
Q 039455 165 TTRDE-HVLKGH-GVTNIYKVRGLDYVEALQLFHLK 198 (216)
Q Consensus 165 tsr~~-~~~~~~-~~~~~~~l~~l~~~~~~~ll~~~ 198 (216)
+|+.+ .++..+ ..-..+.+.+++.++..+.+...
T Consensus 144 ~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 144 ACREPARLLATLRSRCRLHYLAPPPEQYALTWLSRE 179 (334)
T ss_pred EECChhhChHHHHhccccccCCCCCHHHHHHHHHHc
Confidence 66654 344443 22356899999999999888654
No 490
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.20 E-value=2.3e-05 Score=61.30 Aligned_cols=59 Identities=10% Similarity=0.019 Sum_probs=37.9
Q ss_pred HHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 121 INLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...+...+..++-++++|+.- ....+..++..+. .+..+|++||+.+....+ +++.+.+
T Consensus 157 rv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~---~~~tii~isH~~~~i~~~-~d~v~~l 221 (261)
T PRK14263 157 RLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELK---KDYTIALVTHNMQQAIRV-ADTTAFF 221 (261)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHh-CCEEEEE
Confidence 345677777888999999773 2244444444442 246899999998765554 3444444
No 491
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=98.20 E-value=1.2e-05 Score=61.32 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=38.4
Q ss_pred HHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 121 INLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 121 ~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
...+...+..++-++++|+... ...+..++..+. ...+..+|++||+.+... + +++.+.+.
T Consensus 149 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~-~~~~~tii~~sh~~~~~~-~-~d~v~~l~ 215 (220)
T TIGR02982 149 RVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLA-REQGCTILIVTHDNRILD-V-ADRIVHME 215 (220)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHH-HHcCCEEEEEeCCHHHHh-h-CCEEEEEE
Confidence 4457778888999999998732 233334433332 123688999999987643 3 55655553
No 492
>PRK13695 putative NTPase; Provisional
Probab=98.20 E-value=3.1e-06 Score=62.06 Aligned_cols=25 Identities=48% Similarity=0.644 Sum_probs=21.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
.++|+|++|+|||||++.+++.+..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~~ 26 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLKE 26 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999887653
No 493
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.20 E-value=1.5e-06 Score=65.32 Aligned_cols=24 Identities=33% Similarity=0.268 Sum_probs=21.6
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
.+..++|+|++|.||||+++.++.
T Consensus 28 ~~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 28 SSRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999999875
No 494
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.20 E-value=1.9e-05 Score=60.37 Aligned_cols=60 Identities=15% Similarity=0.062 Sum_probs=36.8
Q ss_pred cchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 115 WDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 115 ~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+..+....-+.+.++..|-++..|+.-+ ...++..+..+.. .-+.+|++.||+.+.+-.+
T Consensus 137 SGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~-~l~kTivfVTHDidEA~kL 202 (309)
T COG1125 137 SGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQK-ELGKTIVFVTHDIDEALKL 202 (309)
T ss_pred CcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHH-HhCCEEEEEecCHHHHHhh
Confidence 3444555568888889999999997732 2333332222110 1357899999997654443
No 495
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.19 E-value=2.7e-06 Score=63.68 Aligned_cols=113 Identities=22% Similarity=0.253 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccc
Q 039455 35 MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLII 114 (216)
Q Consensus 35 ~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 114 (216)
.+.+...+.. ..+.++|.|++|+|||++++.+...+...-..+.+.. ... .....+..... ...
T Consensus 7 ~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a-pT~--------~Aa~~L~~~~~----~~a 70 (196)
T PF13604_consen 7 REAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA-PTN--------KAAKELREKTG----IEA 70 (196)
T ss_dssp HHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE-SSH--------HHHHHHHHHHT----S-E
T ss_pred HHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC-CcH--------HHHHHHHHhhC----cch
Confidence 3444444443 2368999999999999999999887766533344432 111 11111221111 001
Q ss_pred cchhhhHHHHHHHh----------CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455 115 WDVHKGINLIRWRL----------CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE 169 (216)
Q Consensus 115 ~~~~~~~~~l~~~l----------~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~ 169 (216)
.+ +..+.... ..+.-+||+|++... ..+..++.... ..++++|+.-...
T Consensus 71 ~T----i~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~ 131 (196)
T PF13604_consen 71 QT----IHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPN 131 (196)
T ss_dssp EE----HHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TT
T ss_pred hh----HHHHHhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcc
Confidence 01 11111101 122349999999765 45666665544 3567888877654
No 496
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=1.8e-05 Score=68.34 Aligned_cols=132 Identities=17% Similarity=0.147 Sum_probs=73.6
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCC-CceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW 126 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 126 (216)
..+.|.|.|+.|+|||+|++.++.++.... ..+.+++| +.+. ...+.. ++.++ ...+..
T Consensus 430 ~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~C-s~l~-~~~~e~-iQk~l-----------------~~vfse 489 (952)
T KOG0735|consen 430 RHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSC-STLD-GSSLEK-IQKFL-----------------NNVFSE 489 (952)
T ss_pred ccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEec-hhcc-chhHHH-HHHHH-----------------HHHHHH
Confidence 357899999999999999999998776432 23344442 2211 011111 11111 122444
Q ss_pred HhCCceEEEEEeCCCCHH-------------------HHHHhhcCCCCCCCCcEEEEEeCCch-----hhhccCCcceEE
Q 039455 127 RLCRKRVLVVLDDVDQLE-------------------QLQALAGNHDWFGFGSRIIITTRDEH-----VLKGHGVTNIYK 182 (216)
Q Consensus 127 ~l~~~~~llvlDd~~~~~-------------------~~~~l~~~~~~~~~~~~il~tsr~~~-----~~~~~~~~~~~~ 182 (216)
.+...|-+|+|||++.+- -+.++...+...++...+|.|..... +.+..-...++.
T Consensus 490 ~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~ 569 (952)
T KOG0735|consen 490 ALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIA 569 (952)
T ss_pred HHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEe
Confidence 556778899999996431 12233333331122234455554321 122222356788
Q ss_pred ecCCChHHHHHHHhhhh
Q 039455 183 VRGLDYVEALQLFHLKV 199 (216)
Q Consensus 183 l~~l~~~~~~~ll~~~~ 199 (216)
++++..++..++|....
T Consensus 570 L~ap~~~~R~~IL~~~~ 586 (952)
T KOG0735|consen 570 LPAPAVTRRKEILTTIF 586 (952)
T ss_pred cCCcchhHHHHHHHHHH
Confidence 99999998888887554
No 497
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=98.19 E-value=4.4e-06 Score=67.53 Aligned_cols=28 Identities=32% Similarity=0.396 Sum_probs=24.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+.+++|+|++|+|||||++.+++...
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~ 67 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLLA 67 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 3568999999999999999999998654
No 498
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.19 E-value=3.9e-06 Score=67.70 Aligned_cols=49 Identities=20% Similarity=0.428 Sum_probs=41.7
Q ss_pred ccccchhHHHHHHHHHhcC----CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 27 GLVGIASRMEKMNGYLEAG----LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 27 ~~vgR~~~~~~l~~~l~~~----~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
.++|.++.+.++.+++... ....++++|+||+|+||||||+.++..+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 6999999999999987632 335689999999999999999999987654
No 499
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.19 E-value=2.4e-05 Score=59.76 Aligned_cols=48 Identities=23% Similarity=0.228 Sum_probs=36.0
Q ss_pred HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC------CceEeec
Q 039455 37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------EASSFLA 84 (216)
Q Consensus 37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~------~~~~~~~ 84 (216)
.|...|..+-+.+.++.|+|++|+|||+|+..++....... ..+.|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 34455555556678999999999999999999987654443 5567775
No 500
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.19 E-value=6.2e-06 Score=59.80 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
...+|+||+|+|||++++.+.-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5999999999999999999764
Done!