Query 039455
Match_columns 216
No_of_seqs 126 out of 1348
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 16:46:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039455.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039455hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 9.8E-26 3.3E-30 192.0 17.1 177 29-214 131-320 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 7.5E-22 2.6E-26 181.4 17.9 186 20-214 118-315 (1249)
3 1z6t_A APAF-1, apoptotic prote 99.9 1.8E-21 6.3E-26 167.0 14.6 172 20-201 118-301 (591)
4 1vt4_I APAF-1 related killer D 99.9 7.1E-21 2.4E-25 168.3 13.9 162 26-199 128-311 (1221)
5 2qen_A Walker-type ATPase; unk 99.7 6.5E-16 2.2E-20 123.9 11.7 173 18-199 4-216 (350)
6 2qby_B CDC6 homolog 3, cell di 99.7 4.8E-15 1.6E-19 120.5 16.9 167 25-199 19-210 (384)
7 1w5s_A Origin recognition comp 99.6 7.3E-16 2.5E-20 126.5 11.0 172 24-199 20-228 (412)
8 2v1u_A Cell division control p 99.6 2.8E-15 9.7E-20 121.8 12.5 172 24-199 17-214 (387)
9 2qby_A CDC6 homolog 1, cell di 99.6 1.4E-15 4.7E-20 123.5 10.1 173 23-199 17-210 (386)
10 1fnn_A CDC6P, cell division co 99.6 1E-14 3.5E-19 118.7 15.3 172 24-199 15-206 (389)
11 2fna_A Conserved hypothetical 99.6 4.7E-15 1.6E-19 119.1 11.6 172 18-199 5-222 (357)
12 1njg_A DNA polymerase III subu 99.5 5.7E-14 1.9E-18 106.6 12.2 182 22-213 19-214 (250)
13 2chg_A Replication factor C sm 99.5 2.1E-13 7.1E-18 102.2 12.9 158 22-200 13-175 (226)
14 3te6_A Regulatory protein SIR3 99.4 1.3E-12 4.6E-17 103.2 12.0 169 26-199 20-211 (318)
15 1jbk_A CLPB protein; beta barr 99.4 2.1E-12 7.2E-17 94.5 10.6 146 24-195 20-194 (195)
16 3h4m_A Proteasome-activating n 99.4 3.5E-12 1.2E-16 99.6 11.3 170 21-213 12-216 (285)
17 1sxj_B Activator 1 37 kDa subu 99.3 4.5E-12 1.5E-16 100.5 10.1 157 22-200 17-180 (323)
18 1iqp_A RFCS; clamp loader, ext 99.3 8.5E-12 2.9E-16 99.0 9.1 168 23-212 22-197 (327)
19 2chq_A Replication factor C sm 99.3 4.3E-11 1.5E-15 94.6 12.2 167 22-213 13-190 (319)
20 3eie_A Vacuolar protein sortin 99.3 6.5E-11 2.2E-15 94.2 13.1 170 22-214 14-214 (322)
21 3d8b_A Fidgetin-like protein 1 99.3 9.9E-11 3.4E-15 94.4 13.2 171 21-214 79-281 (357)
22 1jr3_A DNA polymerase III subu 99.2 1.2E-10 4.3E-15 94.0 13.3 165 24-199 14-191 (373)
23 2z4s_A Chromosomal replication 99.2 7.5E-11 2.6E-15 97.7 11.9 168 25-213 104-292 (440)
24 1xwi_A SKD1 protein; VPS4B, AA 99.2 9.4E-10 3.2E-14 87.5 16.6 171 22-214 8-209 (322)
25 1sxj_E Activator 1 40 kDa subu 99.2 1E-10 3.4E-15 94.1 10.8 183 22-213 10-223 (354)
26 3bos_A Putative DNA replicatio 99.2 8.9E-12 3E-16 94.5 4.3 158 24-213 26-203 (242)
27 3syl_A Protein CBBX; photosynt 99.2 2.5E-10 8.7E-15 90.0 12.7 149 27-200 32-218 (309)
28 4b4t_J 26S protease regulatory 99.2 5.3E-10 1.8E-14 90.6 14.6 168 24-214 146-348 (405)
29 2qz4_A Paraplegin; AAA+, SPG7, 99.2 8.8E-10 3E-14 84.8 15.0 155 24-201 4-192 (262)
30 1l8q_A Chromosomal replication 99.2 2.4E-10 8.3E-15 90.9 12.0 168 24-213 9-195 (324)
31 3cf0_A Transitional endoplasmi 99.2 4.7E-09 1.6E-13 82.7 19.1 157 23-202 12-202 (301)
32 3uk6_A RUVB-like 2; hexameric 99.2 4.1E-10 1.4E-14 91.0 12.6 52 25-76 43-97 (368)
33 4b4t_L 26S protease subunit RP 99.2 1.2E-09 4.1E-14 89.7 15.2 168 24-214 179-381 (437)
34 3vfd_A Spastin; ATPase, microt 99.1 7.1E-10 2.4E-14 90.4 13.2 169 22-213 111-311 (389)
35 2qp9_X Vacuolar protein sortin 99.1 5.8E-10 2E-14 89.9 12.6 170 22-214 47-247 (355)
36 2zan_A Vacuolar protein sortin 99.1 1.8E-09 6.2E-14 89.5 15.8 172 21-214 129-331 (444)
37 1sxj_A Activator 1 95 kDa subu 99.1 5.8E-10 2E-14 94.2 13.0 174 22-213 35-238 (516)
38 3pxg_A Negative regulator of g 99.1 2E-09 6.7E-14 89.9 15.3 149 24-200 178-339 (468)
39 4b4t_H 26S protease regulatory 99.1 1.8E-09 6E-14 88.8 14.7 167 25-214 208-409 (467)
40 4b4t_M 26S protease regulatory 99.1 9.5E-10 3.3E-14 90.3 12.6 171 21-214 176-381 (434)
41 3pvs_A Replication-associated 99.1 1.1E-09 3.9E-14 90.7 13.0 149 22-200 22-179 (447)
42 1hqc_A RUVB; extended AAA-ATPa 99.1 6.7E-10 2.3E-14 88.1 11.2 161 22-212 8-196 (324)
43 1d2n_A N-ethylmaleimide-sensit 99.1 1.5E-09 5.3E-14 84.1 12.9 152 25-198 32-211 (272)
44 2p65_A Hypothetical protein PF 99.1 8.5E-10 2.9E-14 80.1 10.6 50 24-75 20-69 (187)
45 3b9p_A CG5977-PA, isoform A; A 99.1 1.4E-09 4.9E-14 85.2 12.2 169 22-213 17-218 (297)
46 3u61_B DNA polymerase accessor 99.1 1.3E-09 4.5E-14 86.6 12.0 145 23-193 23-172 (324)
47 3n70_A Transport activator; si 99.1 3.1E-10 1.1E-14 79.8 7.5 47 27-73 2-48 (145)
48 4b4t_I 26S protease regulatory 99.1 2.7E-09 9.3E-14 86.9 13.9 169 23-214 179-382 (437)
49 3hu3_A Transitional endoplasmi 99.1 7.9E-10 2.7E-14 92.5 11.1 166 25-213 203-400 (489)
50 1sxj_D Activator 1 41 kDa subu 99.1 1.4E-09 4.8E-14 87.1 12.0 180 22-213 33-221 (353)
51 3pfi_A Holliday junction ATP-d 99.1 9.2E-10 3.1E-14 87.9 10.8 149 22-201 25-199 (338)
52 4b4t_K 26S protease regulatory 99.0 4.2E-09 1.4E-13 86.4 13.4 168 24-214 170-373 (428)
53 2r62_A Cell division protease 99.0 5.5E-10 1.9E-14 86.4 7.7 157 22-201 7-198 (268)
54 1qvr_A CLPB protein; coiled co 99.0 1.4E-09 4.8E-14 97.0 10.8 151 25-198 169-344 (854)
55 1r6b_X CLPA protein; AAA+, N-t 99.0 7.9E-09 2.7E-13 91.1 15.2 154 25-199 185-362 (758)
56 2ce7_A Cell division protein F 99.0 7.1E-09 2.4E-13 86.3 13.3 155 24-201 14-201 (476)
57 1lv7_A FTSH; alpha/beta domain 99.0 1E-08 3.6E-13 78.7 12.8 157 22-201 8-197 (257)
58 3ec2_A DNA replication protein 99.0 3.8E-09 1.3E-13 76.8 9.3 44 31-74 19-63 (180)
59 3pxi_A Negative regulator of g 98.9 1.6E-08 5.4E-13 89.2 14.6 148 25-199 179-338 (758)
60 1sxj_C Activator 1 40 kDa subu 98.9 1.2E-08 4.1E-13 81.6 12.6 155 23-199 22-182 (340)
61 1a5t_A Delta prime, HOLB; zinc 98.9 5.8E-08 2E-12 77.5 15.5 159 30-199 6-180 (334)
62 1ojl_A Transcriptional regulat 98.9 1E-08 3.4E-13 80.9 10.2 49 26-74 2-50 (304)
63 2kjq_A DNAA-related protein; s 98.9 1.3E-09 4.6E-14 76.9 4.6 37 48-84 35-71 (149)
64 2bjv_A PSP operon transcriptio 98.9 8.2E-09 2.8E-13 79.6 9.2 49 26-74 6-54 (265)
65 2gno_A DNA polymerase III, gam 98.9 3.4E-08 1.2E-12 77.8 12.1 146 30-199 1-152 (305)
66 4fcw_A Chaperone protein CLPB; 98.8 1.9E-08 6.6E-13 79.2 10.5 51 26-76 17-74 (311)
67 3cf2_A TER ATPase, transitiona 98.8 1.6E-08 5.6E-13 88.8 10.2 167 25-214 203-401 (806)
68 1ixz_A ATP-dependent metallopr 98.8 2.6E-07 9E-12 70.7 15.7 157 21-201 11-201 (254)
69 3co5_A Putative two-component 98.8 6.3E-09 2.2E-13 72.9 5.8 48 26-73 4-51 (143)
70 1ofh_A ATP-dependent HSL prote 98.8 2.4E-08 8.2E-13 78.4 9.7 49 26-74 15-75 (310)
71 2cbz_A Multidrug resistance-as 98.8 3.1E-08 1E-12 75.3 9.2 65 117-183 131-201 (237)
72 1iy2_A ATP-dependent metallopr 98.7 6E-07 2.1E-11 69.7 15.2 158 21-201 35-225 (278)
73 1vpl_A ABC transporter, ATP-bi 98.7 3.3E-08 1.1E-12 75.9 7.9 56 118-175 151-212 (256)
74 3t15_A Ribulose bisphosphate c 98.7 1.2E-07 4.2E-12 74.2 11.3 27 48-74 35-61 (293)
75 4gp7_A Metallophosphoesterase; 98.7 2.2E-08 7.4E-13 72.3 6.3 53 120-174 90-164 (171)
76 3pxi_A Negative regulator of g 98.7 1.2E-07 4.1E-12 83.6 12.1 148 26-199 491-675 (758)
77 2pcj_A ABC transporter, lipopr 98.7 4.9E-08 1.7E-12 73.6 8.3 61 119-183 146-212 (224)
78 2nq2_C Hypothetical ABC transp 98.7 1.7E-08 5.8E-13 77.5 5.8 127 48-175 30-195 (253)
79 2pze_A Cystic fibrosis transme 98.7 1.6E-07 5.5E-12 70.9 11.1 62 118-184 135-203 (229)
80 2dhr_A FTSH; AAA+ protein, hex 98.7 9.3E-07 3.2E-11 74.0 16.6 153 22-201 27-216 (499)
81 3m6a_A ATP-dependent protease 98.7 2.4E-07 8.3E-12 78.6 13.0 155 27-199 82-266 (543)
82 2olj_A Amino acid ABC transpor 98.7 3.4E-08 1.2E-12 76.1 6.7 62 119-183 165-232 (263)
83 3tui_C Methionine import ATP-b 98.7 7.7E-08 2.6E-12 77.3 8.9 58 117-175 167-230 (366)
84 3tif_A Uncharacterized ABC tra 98.6 5.1E-08 1.7E-12 74.0 6.8 63 118-183 150-218 (235)
85 1b0u_A Histidine permease; ABC 98.6 4E-08 1.4E-12 75.8 6.0 54 120-175 160-219 (262)
86 1ji0_A ABC transporter; ATP bi 98.6 4.1E-08 1.4E-12 74.7 6.0 57 117-175 143-205 (240)
87 1sgw_A Putative ABC transporte 98.6 6.1E-08 2.1E-12 72.4 6.5 55 118-174 138-198 (214)
88 2x8a_A Nuclear valosin-contain 98.6 1.7E-06 5.8E-11 67.1 14.9 152 24-199 8-191 (274)
89 2pjz_A Hypothetical protein ST 98.6 1.6E-07 5.4E-12 72.4 8.8 59 119-183 134-199 (263)
90 2yz2_A Putative ABC transporte 98.6 1E-07 3.5E-12 73.7 7.8 56 118-175 143-204 (266)
91 1ypw_A Transitional endoplasmi 98.6 2.6E-07 9.1E-12 81.8 11.4 153 24-200 202-386 (806)
92 2bbs_A Cystic fibrosis transme 98.6 2.8E-07 9.4E-12 72.0 10.2 61 118-183 164-231 (290)
93 3gfo_A Cobalt import ATP-bindi 98.6 7.1E-08 2.4E-12 74.8 6.5 64 118-183 148-217 (275)
94 1g6h_A High-affinity branched- 98.6 6.4E-08 2.2E-12 74.4 6.1 55 119-175 159-219 (257)
95 1z47_A CYSA, putative ABC-tran 98.6 1.1E-07 3.7E-12 76.2 7.2 58 117-175 149-212 (355)
96 2zu0_C Probable ATP-dependent 98.6 3.2E-07 1.1E-11 70.9 9.5 63 119-183 170-238 (267)
97 2it1_A 362AA long hypothetical 98.6 1.3E-07 4.6E-12 76.0 7.2 58 117-175 137-200 (362)
98 2qi9_C Vitamin B12 import ATP- 98.6 5E-08 1.7E-12 74.6 4.5 28 48-75 25-52 (249)
99 4g1u_C Hemin import ATP-bindin 98.6 6.7E-08 2.3E-12 74.7 5.2 27 48-74 36-62 (266)
100 2w58_A DNAI, primosome compone 98.6 4.8E-07 1.6E-11 66.7 9.7 61 24-84 23-89 (202)
101 3rlf_A Maltose/maltodextrin im 98.5 1.4E-07 4.8E-12 76.2 7.1 58 117-175 137-200 (381)
102 2d2e_A SUFC protein; ABC-ATPas 98.5 1.5E-07 5E-12 72.1 6.7 63 119-183 149-217 (250)
103 2cvh_A DNA repair and recombin 98.5 1.5E-07 5.1E-12 70.2 6.6 44 38-84 9-52 (220)
104 2ehv_A Hypothetical protein PH 98.5 9E-08 3.1E-12 72.9 5.3 25 47-71 28-52 (251)
105 4a74_A DNA repair and recombin 98.5 6.1E-07 2.1E-11 67.3 9.7 37 38-74 14-50 (231)
106 3fvq_A Fe(3+) IONS import ATP- 98.5 2.2E-07 7.7E-12 74.5 7.6 58 116-175 141-205 (359)
107 2onk_A Molybdate/tungstate ABC 98.5 8E-08 2.7E-12 73.1 4.7 57 118-175 131-193 (240)
108 2ixe_A Antigen peptide transpo 98.5 2.7E-07 9.2E-12 71.5 7.5 63 118-183 161-229 (271)
109 1r6b_X CLPA protein; AAA+, N-t 98.5 8.5E-07 2.9E-11 78.2 11.6 48 26-73 458-512 (758)
110 2yyz_A Sugar ABC transporter, 98.5 1.3E-07 4.3E-12 76.0 5.7 58 117-175 137-200 (359)
111 3d31_A Sulfate/molybdate ABC t 98.5 1.8E-07 6.1E-12 74.9 6.2 58 117-175 131-194 (348)
112 2ff7_A Alpha-hemolysin translo 98.5 4E-07 1.4E-11 69.6 7.9 63 117-184 149-217 (247)
113 1mv5_A LMRA, multidrug resista 98.5 5.5E-07 1.9E-11 68.6 8.6 61 118-183 144-210 (243)
114 1um8_A ATP-dependent CLP prote 98.5 1.3E-06 4.5E-11 70.7 11.0 49 26-74 21-97 (376)
115 3cf2_A TER ATPase, transitiona 98.5 3.5E-07 1.2E-11 80.5 7.7 167 25-214 476-677 (806)
116 3jvv_A Twitching mobility prot 98.5 7.2E-07 2.5E-11 71.7 9.0 111 49-172 123-234 (356)
117 1oxx_K GLCV, glucose, ABC tran 98.5 1.7E-07 5.9E-12 75.1 5.4 58 117-175 144-207 (353)
118 1v43_A Sugar-binding transport 98.4 1.3E-07 4.5E-12 76.3 4.6 60 115-175 143-208 (372)
119 1g29_1 MALK, maltose transport 98.4 3E-07 1E-11 74.3 6.4 58 117-175 143-206 (372)
120 2c9o_A RUVB-like 1; hexameric 98.4 6.9E-07 2.4E-11 74.3 8.7 52 25-76 36-90 (456)
121 1ye8_A Protein THEP1, hypothet 98.4 6.1E-07 2.1E-11 65.1 7.4 24 51-74 2-25 (178)
122 2w0m_A SSO2452; RECA, SSPF, un 98.4 3E-07 1E-11 69.1 5.9 38 47-84 21-58 (235)
123 3nbx_X ATPase RAVA; AAA+ ATPas 98.4 1.1E-06 3.9E-11 73.5 9.5 46 25-74 21-66 (500)
124 2ghi_A Transport protein; mult 98.4 8.2E-07 2.8E-11 68.3 8.0 61 118-183 160-226 (260)
125 1qvr_A CLPB protein; coiled co 98.4 2E-06 6.8E-11 76.8 11.4 49 27-75 559-614 (854)
126 2ihy_A ABC transporter, ATP-bi 98.4 2.1E-07 7.3E-12 72.3 4.5 27 48-74 46-72 (279)
127 3j16_B RLI1P; ribosome recycli 98.4 2.2E-07 7.7E-12 79.6 4.8 63 118-183 226-294 (608)
128 3gd7_A Fusion complex of cysti 98.4 8.2E-07 2.8E-11 72.1 7.8 64 115-183 157-226 (390)
129 3ozx_A RNAse L inhibitor; ATP 98.4 3.7E-07 1.2E-11 77.3 5.9 55 118-175 143-203 (538)
130 3bk7_A ABC transporter ATP-bin 98.4 6.9E-07 2.4E-11 76.6 6.9 134 48-183 381-545 (607)
131 1yqt_A RNAse L inhibitor; ATP- 98.3 1.4E-07 4.9E-12 79.9 2.4 64 117-183 162-231 (538)
132 3nh6_A ATP-binding cassette SU 98.3 5.3E-07 1.8E-11 70.9 5.5 62 117-183 194-261 (306)
133 2eyu_A Twitching motility prot 98.3 8.2E-07 2.8E-11 68.4 6.3 111 47-171 23-135 (261)
134 1yqt_A RNAse L inhibitor; ATP- 98.3 6.6E-07 2.3E-11 75.8 5.9 134 48-183 311-475 (538)
135 1ypw_A Transitional endoplasmi 98.3 2.1E-07 7.3E-12 82.4 2.4 154 25-201 476-663 (806)
136 3ozx_A RNAse L inhibitor; ATP 98.3 6.3E-07 2.2E-11 75.8 4.7 64 118-183 390-459 (538)
137 3bk7_A ABC transporter ATP-bin 98.3 2.7E-07 9.1E-12 79.2 2.4 57 117-175 232-294 (607)
138 2qgz_A Helicase loader, putati 98.3 4.1E-06 1.4E-10 66.0 8.8 59 25-83 123-187 (308)
139 1tf7_A KAIC; homohexamer, hexa 98.2 4.7E-06 1.6E-10 70.5 9.5 124 38-169 270-417 (525)
140 3j16_B RLI1P; ribosome recycli 98.2 1.6E-06 5.4E-11 74.4 6.1 133 50-184 379-542 (608)
141 2ewv_A Twitching motility prot 98.2 4.5E-06 1.6E-10 67.5 8.3 111 47-170 134-245 (372)
142 1in4_A RUVB, holliday junction 98.2 1.9E-06 6.5E-11 68.7 5.5 53 22-74 21-76 (334)
143 2pt7_A CAG-ALFA; ATPase, prote 98.2 9.5E-07 3.2E-11 70.3 3.7 106 49-172 171-278 (330)
144 2iw3_A Elongation factor 3A; a 98.2 7.2E-06 2.5E-10 73.5 9.2 129 48-183 460-618 (986)
145 3b5x_A Lipid A export ATP-bind 98.2 9.1E-06 3.1E-10 69.6 9.6 62 118-184 485-552 (582)
146 1u0j_A DNA replication protein 98.1 1.5E-05 5.1E-10 61.2 8.6 37 37-73 92-128 (267)
147 3hr8_A Protein RECA; alpha and 98.1 5.6E-06 1.9E-10 66.4 6.2 50 35-84 46-96 (356)
148 3c8u_A Fructokinase; YP_612366 98.1 4.8E-06 1.6E-10 61.7 5.2 41 34-74 7-47 (208)
149 1rz3_A Hypothetical protein rb 98.1 1.1E-05 3.7E-10 59.5 7.1 46 30-75 2-48 (201)
150 1nlf_A Regulatory protein REPA 98.0 1.7E-05 5.9E-10 61.4 8.4 28 48-75 29-56 (279)
151 4a82_A Cystic fibrosis transme 98.0 6.4E-06 2.2E-10 70.4 6.1 63 117-184 481-549 (578)
152 1n0w_A DNA repair protein RAD5 98.0 2.2E-05 7.6E-10 59.2 8.2 48 37-84 12-65 (243)
153 3qf4_B Uncharacterized ABC tra 98.0 5E-06 1.7E-10 71.4 4.7 62 118-184 496-563 (598)
154 3qf4_A ABC transporter, ATP-bi 98.0 8.8E-06 3E-10 69.7 6.1 62 117-183 483-550 (587)
155 1g5t_A COB(I)alamin adenosyltr 98.0 1.1E-05 3.9E-10 58.9 5.8 114 48-169 27-163 (196)
156 1vma_A Cell division protein F 98.0 5.5E-05 1.9E-09 59.5 9.7 52 32-83 81-138 (306)
157 2r44_A Uncharacterized protein 98.0 7E-06 2.4E-10 65.1 4.7 47 25-75 26-72 (331)
158 3b60_A Lipid A export ATP-bind 97.9 9.6E-06 3.3E-10 69.4 5.6 62 118-184 485-552 (582)
159 2vhj_A Ntpase P4, P4; non- hyd 97.9 9.7E-06 3.3E-10 63.8 5.2 25 48-72 122-146 (331)
160 3ux8_A Excinuclease ABC, A sub 97.9 1E-05 3.6E-10 70.3 5.5 62 118-183 207-276 (670)
161 2iw3_A Elongation factor 3A; a 97.9 2E-05 6.8E-10 70.7 7.3 61 117-183 905-971 (986)
162 2yl4_A ATP-binding cassette SU 97.9 1.1E-05 3.7E-10 69.3 5.3 28 47-74 368-395 (595)
163 3thx_A DNA mismatch repair pro 97.9 2E-05 6.7E-10 70.7 6.9 24 47-70 660-683 (934)
164 2o8b_B DNA mismatch repair pro 97.9 1.7E-06 5.8E-11 78.3 -0.2 21 49-69 789-809 (1022)
165 1zu4_A FTSY; GTPase, signal re 97.9 0.00027 9.1E-09 55.9 12.3 36 48-83 104-139 (320)
166 3hws_A ATP-dependent CLP prote 97.9 1.6E-05 5.6E-10 63.9 5.4 48 27-74 16-76 (363)
167 3dzd_A Transcriptional regulat 97.8 0.00014 4.8E-09 58.7 10.5 50 25-74 128-177 (368)
168 2b8t_A Thymidine kinase; deoxy 97.8 2.1E-05 7.1E-10 58.9 5.2 113 47-169 10-126 (223)
169 1zp6_A Hypothetical protein AT 97.8 1.1E-05 3.7E-10 58.7 3.6 25 48-72 8-32 (191)
170 1v5w_A DMC1, meiotic recombina 97.8 8.6E-05 2.9E-09 59.3 8.9 48 37-84 110-163 (343)
171 2zr9_A Protein RECA, recombina 97.8 3.4E-05 1.2E-09 61.8 6.5 50 35-84 46-96 (349)
172 1htw_A HI0065; nucleotide-bind 97.8 2.8E-05 9.6E-10 55.1 5.4 27 47-73 31-57 (158)
173 3io5_A Recombination and repai 97.8 7.4E-05 2.5E-09 58.7 8.2 47 37-84 13-65 (333)
174 3tr0_A Guanylate kinase, GMP k 97.8 1.3E-05 4.3E-10 59.0 3.7 26 48-73 6-31 (205)
175 3thx_B DNA mismatch repair pro 97.8 6.3E-06 2.2E-10 73.6 2.3 25 47-71 671-695 (918)
176 4aby_A DNA repair protein RECN 97.8 4.2E-05 1.4E-09 62.5 7.1 75 123-202 305-400 (415)
177 1kgd_A CASK, peripheral plasma 97.8 1.5E-05 5.1E-10 57.7 3.5 27 48-74 4-30 (180)
178 3uie_A Adenylyl-sulfate kinase 97.8 2.1E-05 7E-10 57.9 4.3 28 47-74 23-50 (200)
179 1pzn_A RAD51, DNA repair and r 97.8 4.5E-05 1.5E-09 61.1 6.5 37 38-74 120-156 (349)
180 1qhx_A CPT, protein (chloramph 97.8 1.7E-05 5.8E-10 57.0 3.7 25 50-74 4-28 (178)
181 2z43_A DNA repair and recombin 97.8 9.3E-05 3.2E-09 58.6 8.2 47 38-84 96-148 (324)
182 1ewq_A DNA mismatch repair pro 97.8 6.6E-06 2.3E-10 72.3 1.7 24 49-72 576-599 (765)
183 3asz_A Uridine kinase; cytidin 97.8 2.2E-05 7.5E-10 58.1 4.2 27 48-74 5-31 (211)
184 1znw_A Guanylate kinase, GMP k 97.7 1.7E-05 5.9E-10 58.6 3.6 27 47-73 18-44 (207)
185 4f4c_A Multidrug resistance pr 97.7 7.5E-05 2.6E-09 69.6 8.4 28 47-74 442-469 (1321)
186 4eun_A Thermoresistant glucoki 97.7 2E-05 6.9E-10 57.9 3.8 26 48-73 28-53 (200)
187 3e70_C DPA, signal recognition 97.7 4.5E-05 1.6E-09 60.5 6.0 36 47-82 127-162 (328)
188 3tau_A Guanylate kinase, GMP k 97.7 1.9E-05 6.5E-10 58.5 3.5 27 48-74 7-33 (208)
189 3a00_A Guanylate kinase, GMP k 97.7 1.4E-05 4.9E-10 58.0 2.8 25 50-74 2-26 (186)
190 1knq_A Gluconate kinase; ALFA/ 97.7 3E-05 1E-09 55.5 4.4 27 47-73 6-32 (175)
191 1s96_A Guanylate kinase, GMP k 97.7 2E-05 7E-10 58.9 3.6 28 47-74 14-41 (219)
192 1ny5_A Transcriptional regulat 97.7 0.00021 7.2E-09 58.0 9.7 48 26-73 137-184 (387)
193 1g8p_A Magnesium-chelatase 38 97.7 2.8E-05 9.5E-10 61.9 4.5 51 22-74 20-70 (350)
194 3umf_A Adenylate kinase; rossm 97.7 0.0003 1E-08 52.4 9.8 28 46-73 26-53 (217)
195 1kag_A SKI, shikimate kinase I 97.7 1.8E-05 6.2E-10 56.5 3.0 25 50-74 5-29 (173)
196 2px0_A Flagellar biosynthesis 97.7 0.00013 4.4E-09 57.1 7.9 36 48-83 104-140 (296)
197 1wb9_A DNA mismatch repair pro 97.7 1E-05 3.6E-10 71.4 1.8 26 47-72 605-630 (800)
198 1lvg_A Guanylate kinase, GMP k 97.7 1.9E-05 6.5E-10 58.0 3.0 26 49-74 4-29 (198)
199 1odf_A YGR205W, hypothetical 3 97.7 6.9E-05 2.4E-09 58.4 6.1 30 46-75 28-57 (290)
200 1ex7_A Guanylate kinase; subst 97.7 1.7E-05 5.9E-10 57.7 2.5 26 50-75 2-27 (186)
201 1rj9_A FTSY, signal recognitio 97.7 4.5E-05 1.5E-09 59.9 5.1 29 48-76 101-129 (304)
202 3b9q_A Chloroplast SRP recepto 97.7 4.2E-05 1.4E-09 60.0 4.9 29 48-76 99-127 (302)
203 1tf7_A KAIC; homohexamer, hexa 97.7 1.2E-05 4E-10 68.0 1.8 37 47-84 37-75 (525)
204 3vaa_A Shikimate kinase, SK; s 97.7 2.9E-05 1E-09 57.0 3.8 26 48-73 24-49 (199)
205 3kb2_A SPBC2 prophage-derived 97.7 3.1E-05 1E-09 55.2 3.6 25 50-74 2-26 (173)
206 2jeo_A Uridine-cytidine kinase 97.7 3.7E-05 1.3E-09 58.4 4.2 27 47-73 23-49 (245)
207 2bdt_A BH3686; alpha-beta prot 97.6 3.5E-05 1.2E-09 56.0 3.8 24 49-72 2-25 (189)
208 1z6g_A Guanylate kinase; struc 97.6 2.4E-05 8.3E-10 58.4 3.0 27 47-73 21-47 (218)
209 2j41_A Guanylate kinase; GMP, 97.6 3.5E-05 1.2E-09 56.6 3.7 26 48-73 5-30 (207)
210 3ux8_A Excinuclease ABC, A sub 97.6 8.8E-05 3E-09 64.5 6.4 62 118-183 548-618 (670)
211 3ney_A 55 kDa erythrocyte memb 97.6 3.8E-05 1.3E-09 56.3 3.5 27 48-74 18-44 (197)
212 3tlx_A Adenylate kinase 2; str 97.6 8.7E-05 3E-09 56.3 5.6 44 30-73 10-53 (243)
213 3kl4_A SRP54, signal recogniti 97.6 0.00055 1.9E-08 56.3 10.5 36 48-83 96-131 (433)
214 1xp8_A RECA protein, recombina 97.6 0.0001 3.4E-09 59.4 6.0 50 35-84 59-109 (366)
215 1nks_A Adenylate kinase; therm 97.6 8.3E-05 2.8E-09 53.9 5.1 27 50-76 2-28 (194)
216 1tue_A Replication protein E1; 97.6 8.1E-05 2.8E-09 54.8 5.0 45 29-74 39-83 (212)
217 2dr3_A UPF0273 protein PH0284; 97.6 5.8E-05 2E-09 56.9 4.3 45 40-84 14-58 (247)
218 2rhm_A Putative kinase; P-loop 97.6 6.1E-05 2.1E-09 54.7 4.2 26 48-73 4-29 (193)
219 2i1q_A DNA repair and recombin 97.6 0.00027 9.2E-09 55.8 8.3 37 37-73 86-122 (322)
220 3k1j_A LON protease, ATP-depen 97.6 7.9E-05 2.7E-09 64.1 5.5 51 22-76 37-87 (604)
221 3trf_A Shikimate kinase, SK; a 97.6 4.8E-05 1.6E-09 55.0 3.6 26 49-74 5-30 (185)
222 1j8m_F SRP54, signal recogniti 97.6 0.00088 3E-08 52.3 11.0 35 49-83 98-132 (297)
223 2og2_A Putative signal recogni 97.6 7E-05 2.4E-09 60.1 4.8 29 48-76 156-184 (359)
224 3aez_A Pantothenate kinase; tr 97.6 5.3E-05 1.8E-09 59.7 4.1 30 46-75 87-116 (312)
225 1gvn_B Zeta; postsegregational 97.6 8.4E-05 2.9E-09 57.9 5.2 27 47-73 31-57 (287)
226 3lda_A DNA repair protein RAD5 97.6 0.00038 1.3E-08 56.7 9.1 36 37-72 166-201 (400)
227 2i3b_A HCR-ntpase, human cance 97.6 3.7E-05 1.3E-09 56.1 2.9 25 50-74 2-26 (189)
228 2qor_A Guanylate kinase; phosp 97.6 3.9E-05 1.3E-09 56.6 3.0 26 48-73 11-36 (204)
229 3tqc_A Pantothenate kinase; bi 97.5 0.00011 3.7E-09 58.1 5.6 48 28-75 69-118 (321)
230 3sr0_A Adenylate kinase; phosp 97.5 0.00035 1.2E-08 51.6 8.1 23 51-73 2-24 (206)
231 2yvu_A Probable adenylyl-sulfa 97.5 9.7E-05 3.3E-09 53.5 5.0 29 48-76 12-40 (186)
232 3cm0_A Adenylate kinase; ATP-b 97.5 7.1E-05 2.4E-09 54.1 4.1 25 49-73 4-28 (186)
233 1ly1_A Polynucleotide kinase; 97.5 6E-05 2E-09 54.0 3.7 22 50-71 3-24 (181)
234 1sq5_A Pantothenate kinase; P- 97.5 0.00011 3.9E-09 57.7 5.6 28 47-74 78-105 (308)
235 1kht_A Adenylate kinase; phosp 97.5 5.8E-05 2E-09 54.6 3.6 26 50-75 4-29 (192)
236 3b85_A Phosphate starvation-in 97.5 3.8E-05 1.3E-09 56.9 2.6 47 124-174 115-163 (208)
237 3t61_A Gluconokinase; PSI-biol 97.5 4.6E-05 1.6E-09 55.9 3.1 25 49-73 18-42 (202)
238 2ze6_A Isopentenyl transferase 97.5 6.2E-05 2.1E-09 57.5 3.9 25 50-74 2-26 (253)
239 2bbw_A Adenylate kinase 4, AK4 97.5 6.1E-05 2.1E-09 57.2 3.8 25 49-73 27-51 (246)
240 3g5u_A MCG1178, multidrug resi 97.5 8E-05 2.7E-09 69.2 5.0 61 118-183 531-597 (1284)
241 2v9p_A Replication protein E1; 97.5 0.00012 4E-09 57.5 5.2 32 42-73 119-150 (305)
242 1cke_A CK, MSSA, protein (cyti 97.5 6.9E-05 2.3E-09 55.9 3.7 24 50-73 6-29 (227)
243 3lnc_A Guanylate kinase, GMP k 97.5 3.7E-05 1.3E-09 57.8 2.2 26 48-73 26-52 (231)
244 2qt1_A Nicotinamide riboside k 97.5 6.4E-05 2.2E-09 55.4 3.4 28 46-73 18-45 (207)
245 3lw7_A Adenylate kinase relate 97.5 6E-05 2E-09 53.6 3.1 20 50-69 2-21 (179)
246 3iij_A Coilin-interacting nucl 97.5 6.3E-05 2.1E-09 54.1 3.2 25 49-73 11-35 (180)
247 2pez_A Bifunctional 3'-phospho 97.5 9.5E-05 3.2E-09 53.2 4.0 28 47-74 3-30 (179)
248 2yhs_A FTSY, cell division pro 97.5 0.00011 3.6E-09 61.3 4.7 35 48-82 292-326 (503)
249 1y63_A LMAJ004144AAA protein; 97.5 8.5E-05 2.9E-09 53.8 3.7 25 48-72 9-33 (184)
250 4e22_A Cytidylate kinase; P-lo 97.5 8.2E-05 2.8E-09 56.8 3.8 26 48-73 26-51 (252)
251 2c95_A Adenylate kinase 1; tra 97.5 9.3E-05 3.2E-09 53.8 3.9 25 49-73 9-33 (196)
252 1via_A Shikimate kinase; struc 97.5 7.9E-05 2.7E-09 53.4 3.4 24 51-74 6-29 (175)
253 2p5t_B PEZT; postsegregational 97.4 0.00014 4.9E-09 55.4 5.0 28 47-74 30-57 (253)
254 2plr_A DTMP kinase, probable t 97.4 0.0001 3.5E-09 54.2 4.0 28 49-76 4-31 (213)
255 1nn5_A Similar to deoxythymidy 97.4 0.00014 4.7E-09 53.7 4.7 28 49-76 9-36 (215)
256 2if2_A Dephospho-COA kinase; a 97.4 8.6E-05 2.9E-09 54.5 3.5 21 51-71 3-23 (204)
257 1tev_A UMP-CMP kinase; ploop, 97.4 0.0001 3.5E-09 53.5 3.9 25 49-73 3-27 (196)
258 2qm8_A GTPase/ATPase; G protei 97.4 0.00026 9.1E-09 56.3 6.3 38 38-75 44-81 (337)
259 3g5u_A MCG1178, multidrug resi 97.4 5.3E-05 1.8E-09 70.4 2.5 62 117-183 1175-1242(1284)
260 1p9r_A General secretion pathw 97.4 0.00035 1.2E-08 57.3 7.1 30 47-76 165-194 (418)
261 4f4c_A Multidrug resistance pr 97.4 0.00038 1.3E-08 65.0 8.0 26 48-73 1104-1129(1321)
262 2iyv_A Shikimate kinase, SK; t 97.4 7.8E-05 2.7E-09 53.8 2.8 25 50-74 3-27 (184)
263 1zuh_A Shikimate kinase; alpha 97.4 0.00011 3.8E-09 52.2 3.5 25 50-74 8-32 (168)
264 2bwj_A Adenylate kinase 5; pho 97.4 0.00011 3.9E-09 53.5 3.7 25 50-74 13-37 (199)
265 3bh0_A DNAB-like replicative h 97.4 0.00043 1.5E-08 54.6 7.2 46 38-84 58-103 (315)
266 2wwf_A Thymidilate kinase, put 97.4 0.00012 4.2E-09 53.9 3.8 28 48-75 9-36 (212)
267 1cr0_A DNA primase/helicase; R 97.4 0.00015 5.2E-09 56.5 4.6 37 47-83 33-70 (296)
268 1jjv_A Dephospho-COA kinase; P 97.4 9.2E-05 3.1E-09 54.5 3.1 22 50-71 3-24 (206)
269 1svm_A Large T antigen; AAA+ f 97.4 0.00025 8.4E-09 57.3 5.8 29 45-73 165-193 (377)
270 3cmu_A Protein RECA, recombina 97.4 0.00017 6E-09 68.9 5.5 47 38-84 1415-1462(2050)
271 2jaq_A Deoxyguanosine kinase; 97.4 0.00012 4.1E-09 53.5 3.7 24 51-74 2-25 (205)
272 2cdn_A Adenylate kinase; phosp 97.4 0.00014 4.8E-09 53.3 4.0 26 48-73 19-44 (201)
273 2q6t_A DNAB replication FORK h 97.4 0.0017 5.7E-08 53.7 10.8 46 38-84 190-236 (444)
274 1ls1_A Signal recognition part 97.4 0.00074 2.5E-08 52.7 8.2 36 48-83 97-132 (295)
275 1xjc_A MOBB protein homolog; s 97.4 0.00018 6.1E-09 51.4 4.3 28 49-76 4-31 (169)
276 1ukz_A Uridylate kinase; trans 97.4 0.00016 5.4E-09 53.0 4.1 26 48-73 14-39 (203)
277 1g41_A Heat shock protein HSLU 97.3 0.00022 7.6E-09 58.7 5.2 50 26-75 15-76 (444)
278 2vli_A Antibiotic resistance p 97.3 8.6E-05 3E-09 53.4 2.5 26 49-74 5-30 (183)
279 1uf9_A TT1252 protein; P-loop, 97.3 0.00017 5.7E-09 52.7 4.1 26 47-72 6-31 (203)
280 1aky_A Adenylate kinase; ATP:A 97.3 0.00014 4.9E-09 54.1 3.8 26 49-74 4-29 (220)
281 1qf9_A UMP/CMP kinase, protein 97.3 0.00016 5.6E-09 52.2 4.0 25 49-73 6-30 (194)
282 1uj2_A Uridine-cytidine kinase 97.3 0.00016 5.6E-09 55.0 4.0 27 48-74 21-47 (252)
283 3fb4_A Adenylate kinase; psych 97.3 0.00015 5E-09 53.8 3.7 23 51-73 2-24 (216)
284 4a1f_A DNAB helicase, replicat 97.3 0.00053 1.8E-08 54.5 7.0 38 47-84 44-81 (338)
285 3dm5_A SRP54, signal recogniti 97.3 0.0012 4.2E-08 54.3 9.3 35 48-82 99-133 (443)
286 2v54_A DTMP kinase, thymidylat 97.3 0.00015 5.1E-09 53.1 3.6 25 49-73 4-28 (204)
287 2fz4_A DNA repair protein RAD2 97.3 0.0082 2.8E-07 45.1 13.1 40 29-73 93-132 (237)
288 3sop_A Neuronal-specific septi 97.3 0.00016 5.6E-09 55.7 3.7 23 51-73 4-26 (270)
289 1e6c_A Shikimate kinase; phosp 97.3 0.00015 5.3E-09 51.6 3.4 24 50-73 3-26 (173)
290 3dl0_A Adenylate kinase; phosp 97.3 0.00016 5.4E-09 53.6 3.5 23 51-73 2-24 (216)
291 1tq4_A IIGP1, interferon-induc 97.3 0.00016 5.3E-09 59.2 3.8 25 48-72 68-92 (413)
292 1m7g_A Adenylylsulfate kinase; 97.3 0.0002 6.9E-09 52.9 4.1 27 48-74 24-50 (211)
293 2pt5_A Shikimate kinase, SK; a 97.3 0.00018 6E-09 51.0 3.6 24 51-74 2-25 (168)
294 4akg_A Glutathione S-transfera 97.3 0.0017 5.9E-08 64.0 11.3 24 50-73 1268-1291(2695)
295 2pbr_A DTMP kinase, thymidylat 97.3 0.00018 6E-09 52.2 3.7 24 51-74 2-25 (195)
296 2ga8_A Hypothetical 39.9 kDa p 97.3 0.00031 1.1E-08 56.0 5.2 43 32-74 5-49 (359)
297 2vf7_A UVRA2, excinuclease ABC 97.3 0.00016 5.4E-09 64.2 3.8 61 120-184 737-806 (842)
298 3p32_A Probable GTPase RV1496/ 97.3 0.0007 2.4E-08 54.3 7.3 40 37-76 67-106 (355)
299 2z0h_A DTMP kinase, thymidylat 97.3 0.00019 6.5E-09 52.2 3.7 25 51-75 2-26 (197)
300 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00021 7E-09 54.8 4.0 26 49-74 4-29 (260)
301 3cr8_A Sulfate adenylyltranfer 97.3 0.00024 8.2E-09 60.2 4.7 49 28-76 348-396 (552)
302 1jr3_D DNA polymerase III, del 97.3 0.0017 6E-08 51.5 9.5 141 48-213 17-171 (343)
303 1zd8_A GTP:AMP phosphotransfer 97.3 0.00018 6.1E-09 53.8 3.6 25 49-73 7-31 (227)
304 1zak_A Adenylate kinase; ATP:A 97.3 0.00017 5.7E-09 53.8 3.4 26 49-74 5-30 (222)
305 3ice_A Transcription terminati 97.3 0.00044 1.5E-08 55.8 5.9 30 47-76 172-201 (422)
306 1sky_E F1-ATPase, F1-ATP synth 97.2 0.00099 3.4E-08 55.1 8.0 27 49-75 151-177 (473)
307 2f1r_A Molybdopterin-guanine d 97.2 0.00011 3.8E-09 52.7 2.1 27 50-76 3-29 (171)
308 3kta_A Chromosome segregation 97.2 0.00021 7.2E-09 51.4 3.4 24 50-73 27-50 (182)
309 2xxa_A Signal recognition part 97.2 0.0079 2.7E-07 49.5 13.1 44 33-76 77-127 (433)
310 3nwj_A ATSK2; P loop, shikimat 97.2 0.00018 6.1E-09 54.8 3.0 26 49-74 48-73 (250)
311 3pih_A Uvrabc system protein A 97.2 0.0011 3.6E-08 59.4 8.3 64 118-185 810-882 (916)
312 1u94_A RECA protein, recombina 97.2 0.00028 9.6E-09 56.6 4.3 49 36-84 49-98 (356)
313 1gtv_A TMK, thymidylate kinase 97.2 0.00013 4.5E-09 53.8 2.1 24 51-74 2-25 (214)
314 2grj_A Dephospho-COA kinase; T 97.2 0.00027 9.3E-09 51.6 3.6 25 49-73 12-36 (192)
315 1np6_A Molybdopterin-guanine d 97.2 0.00038 1.3E-08 50.0 4.3 27 49-75 6-32 (174)
316 1vht_A Dephospho-COA kinase; s 97.2 0.00032 1.1E-08 52.1 4.0 23 49-71 4-26 (218)
317 2gza_A Type IV secretion syste 97.2 0.00024 8.2E-09 57.1 3.5 113 49-170 175-288 (361)
318 3exa_A TRNA delta(2)-isopenten 97.2 0.00029 9.8E-09 55.3 3.8 25 49-73 3-27 (322)
319 3ake_A Cytidylate kinase; CMP 97.2 0.00029 9.9E-09 51.6 3.7 24 51-74 4-27 (208)
320 3r20_A Cytidylate kinase; stru 97.2 0.00029 9.9E-09 53.1 3.7 26 49-74 9-34 (233)
321 2vp4_A Deoxynucleoside kinase; 97.1 0.00019 6.6E-09 53.9 2.6 26 47-72 18-43 (230)
322 1oix_A RAS-related protein RAB 97.1 0.0003 1E-08 51.1 3.5 25 49-73 29-53 (191)
323 2obl_A ESCN; ATPase, hydrolase 97.1 0.00035 1.2E-08 55.8 4.2 30 47-76 69-98 (347)
324 1lw7_A Transcriptional regulat 97.1 0.00028 9.7E-09 56.7 3.7 27 49-75 170-196 (365)
325 1e4v_A Adenylate kinase; trans 97.1 0.00033 1.1E-08 51.9 3.8 23 51-73 2-24 (214)
326 3a8t_A Adenylate isopentenyltr 97.1 0.00029 9.8E-09 55.9 3.5 27 48-74 39-65 (339)
327 3be4_A Adenylate kinase; malar 97.1 0.00027 9.3E-09 52.5 3.3 24 50-73 6-29 (217)
328 2wsm_A Hydrogenase expression/ 97.1 0.00089 3E-08 49.5 6.1 44 31-76 14-57 (221)
329 1g8f_A Sulfate adenylyltransfe 97.1 0.00047 1.6E-08 57.8 4.9 48 28-75 374-421 (511)
330 2hf9_A Probable hydrogenase ni 97.1 0.0013 4.6E-08 48.7 7.0 40 34-75 25-64 (226)
331 3foz_A TRNA delta(2)-isopenten 97.1 0.00042 1.4E-08 54.3 4.2 26 48-73 9-34 (316)
332 4eaq_A DTMP kinase, thymidylat 97.1 0.00044 1.5E-08 51.9 4.2 29 47-75 24-52 (229)
333 3crm_A TRNA delta(2)-isopenten 97.1 0.00041 1.4E-08 54.7 4.1 26 49-74 5-30 (323)
334 2orw_A Thymidine kinase; TMTK, 97.1 0.00055 1.9E-08 49.6 4.5 26 49-74 3-28 (184)
335 2xb4_A Adenylate kinase; ATP-b 97.1 0.00036 1.2E-08 52.1 3.7 23 51-73 2-24 (223)
336 2p67_A LAO/AO transport system 97.1 0.00099 3.4E-08 53.1 6.4 37 38-74 45-81 (341)
337 2qmh_A HPR kinase/phosphorylas 97.1 0.00029 1E-08 51.5 3.0 25 49-73 34-58 (205)
338 1a7j_A Phosphoribulokinase; tr 97.1 0.00019 6.4E-09 56.0 2.1 27 48-74 4-30 (290)
339 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00041 1.4E-08 48.5 3.6 24 50-73 24-47 (149)
340 2f9l_A RAB11B, member RAS onco 97.1 0.00031 1.1E-08 51.2 3.2 24 49-72 5-28 (199)
341 3d3q_A TRNA delta(2)-isopenten 97.1 0.00039 1.4E-08 55.2 3.8 25 50-74 8-32 (340)
342 1nij_A Hypothetical protein YJ 97.1 0.00037 1.3E-08 55.0 3.6 26 48-73 3-28 (318)
343 1ak2_A Adenylate kinase isoenz 97.1 0.00044 1.5E-08 51.9 3.9 26 49-74 16-41 (233)
344 2yv5_A YJEQ protein; hydrolase 97.1 0.00049 1.7E-08 53.9 4.2 25 49-74 165-189 (302)
345 2f6r_A COA synthase, bifunctio 97.0 0.00049 1.7E-08 53.3 4.0 24 48-71 74-97 (281)
346 2ffh_A Protein (FFH); SRP54, s 97.0 0.0034 1.2E-07 51.4 9.1 36 48-83 97-132 (425)
347 1q3t_A Cytidylate kinase; nucl 97.0 0.00051 1.7E-08 51.7 3.9 27 47-73 14-40 (236)
348 2dpy_A FLII, flagellum-specifi 97.0 0.00082 2.8E-08 55.4 5.4 29 47-75 155-183 (438)
349 2npi_A Protein CLP1; CLP1-PCF1 97.0 0.00036 1.2E-08 57.9 3.1 27 47-73 136-162 (460)
350 3hjn_A DTMP kinase, thymidylat 97.0 0.0038 1.3E-07 45.6 8.3 33 51-83 2-34 (197)
351 3euj_A Chromosome partition pr 96.9 0.00062 2.1E-08 56.7 4.0 25 50-74 30-54 (483)
352 1ltq_A Polynucleotide kinase; 96.9 0.00059 2E-08 53.2 3.7 23 50-72 3-25 (301)
353 2wji_A Ferrous iron transport 96.9 0.0006 2.1E-08 48.1 3.4 22 50-71 4-25 (165)
354 3upu_A ATP-dependent DNA helic 96.9 0.0011 3.8E-08 55.0 5.5 50 24-76 19-72 (459)
355 2www_A Methylmalonic aciduria 96.9 0.00095 3.3E-08 53.4 4.8 27 48-74 73-99 (349)
356 3bgw_A DNAB-like replicative h 96.9 0.002 6.8E-08 53.2 6.9 38 47-84 195-232 (444)
357 2ged_A SR-beta, signal recogni 96.9 0.0008 2.8E-08 48.5 4.1 25 48-72 47-71 (193)
358 3zvl_A Bifunctional polynucleo 96.9 0.00051 1.7E-08 56.3 3.2 27 47-73 256-282 (416)
359 2qag_B Septin-6, protein NEDD5 96.9 0.00066 2.3E-08 55.6 3.8 25 48-72 39-65 (427)
360 3tqf_A HPR(Ser) kinase; transf 96.9 0.00082 2.8E-08 48.0 3.6 24 49-72 16-39 (181)
361 2oap_1 GSPE-2, type II secreti 96.9 0.0013 4.4E-08 55.3 5.4 26 50-75 261-286 (511)
362 1u0l_A Probable GTPase ENGC; p 96.9 0.00065 2.2E-08 53.2 3.4 26 49-74 169-194 (301)
363 2gj8_A MNME, tRNA modification 96.8 0.00076 2.6E-08 48.0 3.5 24 49-72 4-27 (172)
364 2zej_A Dardarin, leucine-rich 96.8 0.00043 1.5E-08 49.8 2.1 21 51-71 4-24 (184)
365 2zts_A Putative uncharacterize 96.8 0.00042 1.4E-08 52.2 2.1 43 42-84 23-66 (251)
366 2wjg_A FEOB, ferrous iron tran 96.8 0.00085 2.9E-08 48.1 3.6 24 49-72 7-30 (188)
367 2dyk_A GTP-binding protein; GT 96.8 0.00092 3.1E-08 46.5 3.7 23 50-72 2-24 (161)
368 1pui_A ENGB, probable GTP-bind 96.8 0.00045 1.6E-08 50.6 2.1 26 47-72 24-49 (210)
369 3eph_A TRNA isopentenyltransfe 96.8 0.00089 3E-08 54.3 3.9 24 50-73 3-26 (409)
370 2iut_A DNA translocase FTSK; n 96.8 0.022 7.5E-07 48.3 12.4 65 132-196 344-420 (574)
371 4edh_A DTMP kinase, thymidylat 96.8 0.0018 6.1E-08 48.1 5.2 29 48-76 5-33 (213)
372 1w4r_A Thymidine kinase; type 96.8 0.00097 3.3E-08 48.6 3.4 30 47-76 18-48 (195)
373 2j9r_A Thymidine kinase; TK1, 96.7 0.002 6.8E-08 47.7 5.0 36 47-82 26-61 (214)
374 2rcn_A Probable GTPase ENGC; Y 96.7 0.0008 2.7E-08 53.9 3.1 25 50-74 216-240 (358)
375 2ocp_A DGK, deoxyguanosine kin 96.7 0.0012 4.2E-08 49.7 4.0 26 49-74 2-27 (241)
376 2r6a_A DNAB helicase, replicat 96.7 0.0021 7.2E-08 53.2 5.7 38 47-84 201-239 (454)
377 2ce2_X GTPase HRAS; signaling 96.7 0.001 3.5E-08 46.3 3.3 23 50-72 4-26 (166)
378 1yrb_A ATP(GTP)binding protein 96.7 0.0023 7.8E-08 48.6 5.5 28 47-74 12-39 (262)
379 3f9v_A Minichromosome maintena 96.7 0.00045 1.5E-08 59.2 1.7 49 25-73 294-351 (595)
380 2gks_A Bifunctional SAT/APS ki 96.7 0.0025 8.5E-08 54.0 6.1 48 28-75 351-398 (546)
381 1z2a_A RAS-related protein RAB 96.7 0.0014 4.7E-08 45.9 3.9 25 48-72 4-28 (168)
382 2r8r_A Sensor protein; KDPD, P 96.7 0.0016 5.3E-08 48.7 4.3 32 50-81 7-38 (228)
383 3qks_A DNA double-strand break 96.7 0.0012 4E-08 48.6 3.6 24 50-73 24-47 (203)
384 1h65_A Chloroplast outer envel 96.7 0.003 1E-07 48.5 5.9 31 42-72 32-62 (270)
385 3cmw_A Protein RECA, recombina 96.7 0.0018 6.2E-08 61.3 5.4 100 36-140 369-470 (1706)
386 3qf7_A RAD50; ABC-ATPase, ATPa 96.7 0.0011 3.9E-08 53.2 3.6 51 130-184 302-358 (365)
387 1fzq_A ADP-ribosylation factor 96.7 0.0016 5.4E-08 46.6 4.1 26 47-72 14-39 (181)
388 2nzj_A GTP-binding protein REM 96.7 0.0013 4.5E-08 46.4 3.6 23 49-71 4-26 (175)
389 3def_A T7I23.11 protein; chlor 96.6 0.0033 1.1E-07 48.0 5.9 36 37-72 24-59 (262)
390 2fn4_A P23, RAS-related protei 96.6 0.002 6.7E-08 45.7 4.4 26 47-72 7-32 (181)
391 3cmu_A Protein RECA, recombina 96.6 0.0021 7.1E-08 61.8 5.5 49 36-84 369-418 (2050)
392 2qnr_A Septin-2, protein NEDD5 96.6 0.00098 3.4E-08 52.2 2.9 22 50-71 19-40 (301)
393 2lkc_A Translation initiation 96.6 0.0013 4.4E-08 46.6 3.3 24 48-71 7-30 (178)
394 4gzl_A RAS-related C3 botulinu 96.6 0.0016 5.4E-08 47.7 3.8 24 48-71 29-52 (204)
395 1kao_A RAP2A; GTP-binding prot 96.6 0.0013 4.4E-08 45.9 3.2 23 50-72 4-26 (167)
396 1u8z_A RAS-related protein RAL 96.6 0.002 6.9E-08 44.9 4.2 24 49-72 4-27 (168)
397 3lv8_A DTMP kinase, thymidylat 96.6 0.0016 5.3E-08 49.2 3.7 29 48-76 26-54 (236)
398 1z08_A RAS-related protein RAB 96.6 0.0013 4.5E-08 46.1 3.2 24 49-72 6-29 (170)
399 1m8p_A Sulfate adenylyltransfe 96.6 0.0026 8.8E-08 54.2 5.4 28 47-74 394-421 (573)
400 3qkt_A DNA double-strand break 96.6 0.0014 4.8E-08 52.1 3.6 57 124-184 265-327 (339)
401 1ek0_A Protein (GTP-binding pr 96.6 0.0014 4.7E-08 45.9 3.2 23 50-72 4-26 (170)
402 2h92_A Cytidylate kinase; ross 96.6 0.0012 4E-08 48.9 3.0 24 50-73 4-27 (219)
403 1z0j_A RAB-22, RAS-related pro 96.6 0.0014 4.7E-08 46.0 3.2 23 50-72 7-29 (170)
404 1nrj_B SR-beta, signal recogni 96.6 0.0016 5.5E-08 47.9 3.7 25 48-72 11-35 (218)
405 3fwy_A Light-independent proto 96.6 0.0023 7.9E-08 50.4 4.7 37 48-84 47-83 (314)
406 2j37_W Signal recognition part 96.6 0.0038 1.3E-07 52.3 6.3 29 48-76 100-128 (504)
407 1g16_A RAS-related protein SEC 96.6 0.002 6.9E-08 45.1 4.0 23 50-72 4-26 (170)
408 1svi_A GTP-binding protein YSX 96.6 0.0015 5.1E-08 47.1 3.4 25 48-72 22-46 (195)
409 3ld9_A DTMP kinase, thymidylat 96.6 0.002 6.7E-08 48.2 4.1 29 47-75 19-47 (223)
410 1wms_A RAB-9, RAB9, RAS-relate 96.6 0.0014 4.9E-08 46.3 3.2 24 49-72 7-30 (177)
411 1ky3_A GTP-binding protein YPT 96.6 0.002 6.7E-08 45.7 3.9 25 48-72 7-31 (182)
412 2v3c_C SRP54, signal recogniti 96.6 0.00089 3E-08 55.1 2.3 28 49-76 99-126 (432)
413 1c1y_A RAS-related protein RAP 96.6 0.0015 5.1E-08 45.6 3.2 23 50-72 4-26 (167)
414 3e1s_A Exodeoxyribonuclease V, 96.5 0.01 3.4E-07 50.7 8.8 27 50-76 205-231 (574)
415 2erx_A GTP-binding protein DI- 96.5 0.0018 6.2E-08 45.4 3.6 23 49-71 3-25 (172)
416 1m7b_A RND3/RHOE small GTP-bin 96.5 0.0016 5.5E-08 46.6 3.3 25 48-72 6-30 (184)
417 1r8s_A ADP-ribosylation factor 96.5 0.0016 5.5E-08 45.4 3.2 22 51-72 2-23 (164)
418 3pqc_A Probable GTP-binding pr 96.5 0.0018 6.1E-08 46.5 3.6 25 48-72 22-46 (195)
419 3con_A GTPase NRAS; structural 96.5 0.0016 5.4E-08 46.8 3.2 24 49-72 21-44 (190)
420 4b3f_X DNA-binding protein smu 96.5 0.0038 1.3E-07 54.0 6.1 37 33-73 193-229 (646)
421 1upt_A ARL1, ADP-ribosylation 96.5 0.0022 7.4E-08 45.0 3.9 24 48-71 6-29 (171)
422 3q72_A GTP-binding protein RAD 96.5 0.0015 5.1E-08 45.7 3.0 21 51-71 4-24 (166)
423 3ihw_A Centg3; RAS, centaurin, 96.5 0.0016 5.5E-08 46.8 3.2 25 48-72 19-43 (184)
424 1m2o_B GTP-binding protein SAR 96.5 0.0017 5.8E-08 46.9 3.3 24 49-72 23-46 (190)
425 4tmk_A Protein (thymidylate ki 96.5 0.0044 1.5E-07 45.9 5.6 28 49-76 3-30 (213)
426 1r2q_A RAS-related protein RAB 96.5 0.0017 5.8E-08 45.4 3.2 23 49-71 6-28 (170)
427 2orv_A Thymidine kinase; TP4A 96.5 0.0068 2.3E-07 45.3 6.5 108 48-169 18-126 (234)
428 2cxx_A Probable GTP-binding pr 96.5 0.0014 4.8E-08 46.9 2.8 22 51-72 3-24 (190)
429 3q85_A GTP-binding protein REM 96.5 0.0016 5.6E-08 45.6 3.1 22 50-71 3-24 (169)
430 2y8e_A RAB-protein 6, GH09086P 96.5 0.0018 6.3E-08 45.7 3.3 22 50-71 15-36 (179)
431 2o5v_A DNA replication and rep 96.5 0.0021 7.1E-08 51.6 3.8 22 50-71 27-48 (359)
432 1t9h_A YLOQ, probable GTPase E 96.5 0.00064 2.2E-08 53.3 0.8 25 49-73 173-197 (307)
433 3bc1_A RAS-related protein RAB 96.5 0.0018 6.3E-08 46.4 3.2 24 49-72 11-34 (195)
434 2bme_A RAB4A, RAS-related prot 96.5 0.0019 6.6E-08 46.1 3.3 25 48-72 9-33 (186)
435 1z0f_A RAB14, member RAS oncog 96.4 0.0019 6.5E-08 45.7 3.2 25 48-72 14-38 (179)
436 2cjw_A GTP-binding protein GEM 96.4 0.0019 6.4E-08 46.8 3.2 23 49-71 6-28 (192)
437 3v9p_A DTMP kinase, thymidylat 96.4 0.0016 5.6E-08 48.7 2.9 29 48-76 24-52 (227)
438 3tmk_A Thymidylate kinase; pho 96.4 0.0028 9.7E-08 47.1 4.1 28 48-75 4-31 (216)
439 2oil_A CATX-8, RAS-related pro 96.4 0.0019 6.6E-08 46.5 3.2 24 49-72 25-48 (193)
440 4hlc_A DTMP kinase, thymidylat 96.4 0.0042 1.4E-07 45.7 5.0 29 50-78 3-31 (205)
441 3lxx_A GTPase IMAP family memb 96.4 0.0023 7.7E-08 48.1 3.6 26 47-72 27-52 (239)
442 2qag_C Septin-7; cell cycle, c 96.4 0.0013 4.5E-08 53.8 2.4 24 50-73 32-55 (418)
443 2ck3_D ATP synthase subunit be 96.4 0.022 7.4E-07 47.2 9.5 27 48-74 152-178 (482)
444 3fdi_A Uncharacterized protein 96.4 0.0025 8.6E-08 46.8 3.7 25 50-74 7-31 (201)
445 3clv_A RAB5 protein, putative; 96.4 0.0021 7E-08 46.4 3.2 24 49-72 7-30 (208)
446 2axn_A 6-phosphofructo-2-kinas 96.4 0.0026 8.9E-08 53.6 4.2 27 48-74 34-60 (520)
447 1p5z_B DCK, deoxycytidine kina 96.4 0.0011 3.6E-08 50.8 1.7 27 48-74 23-49 (263)
448 3gmt_A Adenylate kinase; ssgci 96.4 0.0025 8.6E-08 47.8 3.7 24 50-73 9-32 (230)
449 2hxs_A RAB-26, RAS-related pro 96.4 0.0031 1.1E-07 44.5 4.1 25 48-72 5-29 (178)
450 3kkq_A RAS-related protein M-R 96.4 0.0022 7.5E-08 45.7 3.2 25 48-72 17-41 (183)
451 2efe_B Small GTP-binding prote 96.4 0.0022 7.5E-08 45.5 3.2 24 49-72 12-35 (181)
452 4dsu_A GTPase KRAS, isoform 2B 96.4 0.0026 8.7E-08 45.4 3.6 24 49-72 4-27 (189)
453 1ega_A Protein (GTP-binding pr 96.4 0.0022 7.5E-08 50.1 3.4 25 48-72 7-31 (301)
454 2fg5_A RAB-22B, RAS-related pr 96.4 0.0023 7.8E-08 46.2 3.3 24 49-72 23-46 (192)
455 2a9k_A RAS-related protein RAL 96.4 0.0022 7.7E-08 45.6 3.2 24 49-72 18-41 (187)
456 1fx0_B ATP synthase beta chain 96.4 0.022 7.4E-07 47.4 9.4 37 47-83 163-200 (498)
457 1gwn_A RHO-related GTP-binding 96.4 0.0031 1.1E-07 46.2 4.0 25 48-72 27-51 (205)
458 2g6b_A RAS-related protein RAB 96.4 0.0023 7.8E-08 45.4 3.2 24 49-72 10-33 (180)
459 2iwr_A Centaurin gamma 1; ANK 96.4 0.0016 5.5E-08 46.2 2.4 24 49-72 7-30 (178)
460 3tw8_B RAS-related protein RAB 96.4 0.0025 8.5E-08 45.1 3.4 25 47-71 7-31 (181)
461 1f6b_A SAR1; gtpases, N-termin 96.3 0.0025 8.4E-08 46.4 3.4 23 49-71 25-47 (198)
462 3t1o_A Gliding protein MGLA; G 96.3 0.0021 7.1E-08 46.2 3.0 25 49-73 14-38 (198)
463 1vg8_A RAS-related protein RAB 96.3 0.0031 1.1E-07 45.8 3.9 25 48-72 7-31 (207)
464 3c5c_A RAS-like protein 12; GD 96.3 0.0032 1.1E-07 45.2 3.9 25 48-72 20-44 (187)
465 2bov_A RAla, RAS-related prote 96.3 0.0036 1.2E-07 45.4 4.2 25 48-72 13-37 (206)
466 3t5g_A GTP-binding protein RHE 96.3 0.0025 8.6E-08 45.3 3.3 23 49-71 6-28 (181)
467 2ew1_A RAS-related protein RAB 96.3 0.0025 8.4E-08 46.6 3.3 24 49-72 26-49 (201)
468 1mh1_A RAC1; GTP-binding, GTPa 96.3 0.0032 1.1E-07 44.8 3.8 23 49-71 5-27 (186)
469 2atv_A RERG, RAS-like estrogen 96.3 0.0024 8.3E-08 46.2 3.2 25 48-72 27-51 (196)
470 3dz8_A RAS-related protein RAB 96.3 0.0025 8.7E-08 45.9 3.3 24 49-72 23-46 (191)
471 1x6v_B Bifunctional 3'-phospho 96.3 0.0031 1.1E-07 54.1 4.3 27 48-74 51-77 (630)
472 1c9k_A COBU, adenosylcobinamid 96.3 0.0025 8.4E-08 45.9 3.1 21 52-72 2-22 (180)
473 3bwd_D RAC-like GTP-binding pr 96.3 0.0025 8.5E-08 45.3 3.2 24 49-72 8-31 (182)
474 1q57_A DNA primase/helicase; d 96.3 0.0049 1.7E-07 51.7 5.4 38 47-84 240-278 (503)
475 1w1w_A Structural maintenance 96.3 0.0024 8.4E-08 52.4 3.5 23 49-71 26-48 (430)
476 2gf9_A RAS-related protein RAB 96.3 0.0025 8.6E-08 45.8 3.2 24 49-72 22-45 (189)
477 1moz_A ARL1, ADP-ribosylation 96.3 0.0023 7.7E-08 45.6 2.9 25 47-71 16-40 (183)
478 1e69_A Chromosome segregation 96.3 0.0017 5.8E-08 51.2 2.4 22 50-71 25-46 (322)
479 1zd9_A ADP-ribosylation factor 96.3 0.0026 8.8E-08 45.7 3.2 24 49-72 22-45 (188)
480 2gf0_A GTP-binding protein DI- 96.3 0.004 1.4E-07 44.9 4.2 24 48-71 7-30 (199)
481 3oes_A GTPase rhebl1; small GT 96.3 0.0038 1.3E-07 45.4 4.0 25 48-72 23-47 (201)
482 1qhl_A Protein (cell division 96.3 0.00096 3.3E-08 50.0 0.8 26 51-76 29-54 (227)
483 2a5j_A RAS-related protein RAB 96.3 0.0027 9.1E-08 45.8 3.2 24 49-72 21-44 (191)
484 2bcg_Y Protein YP2, GTP-bindin 96.3 0.0028 9.6E-08 46.2 3.3 24 49-72 8-31 (206)
485 3reg_A RHO-like small GTPase; 96.2 0.0028 9.6E-08 45.7 3.2 25 48-72 22-46 (194)
486 3tkl_A RAS-related protein RAB 96.2 0.0028 9.6E-08 45.6 3.2 25 48-72 15-39 (196)
487 1zj6_A ADP-ribosylation factor 96.2 0.0037 1.3E-07 44.8 3.8 25 47-71 14-38 (187)
488 1zbd_A Rabphilin-3A; G protein 96.2 0.0025 8.6E-08 46.3 2.9 24 49-72 8-31 (203)
489 2p5s_A RAS and EF-hand domain 96.2 0.0029 9.8E-08 45.9 3.2 25 48-72 27-51 (199)
490 2fh5_B SR-beta, signal recogni 96.2 0.0029 9.9E-08 46.4 3.2 24 49-72 7-30 (214)
491 3cbq_A GTP-binding protein REM 96.2 0.0028 9.6E-08 46.0 3.1 24 48-71 22-45 (195)
492 3end_A Light-independent proto 96.2 0.005 1.7E-07 48.0 4.7 38 47-84 39-76 (307)
493 3k53_A Ferrous iron transport 96.2 0.0032 1.1E-07 48.3 3.6 23 50-72 4-26 (271)
494 1z06_A RAS-related protein RAB 96.2 0.0041 1.4E-07 44.6 3.9 23 49-71 20-42 (189)
495 1cp2_A CP2, nitrogenase iron p 96.2 0.006 2.1E-07 46.5 5.1 35 50-84 2-36 (269)
496 3auy_A DNA double-strand break 96.2 0.0033 1.1E-07 50.6 3.7 23 49-71 25-47 (371)
497 1x3s_A RAS-related protein RAB 96.2 0.0031 1E-07 45.3 3.2 24 49-72 15-38 (195)
498 2h17_A ADP-ribosylation factor 96.2 0.0026 8.8E-08 45.4 2.8 24 49-72 21-44 (181)
499 4bas_A ADP-ribosylation factor 96.2 0.0037 1.3E-07 45.1 3.6 25 47-71 15-39 (199)
500 3hdt_A Putative kinase; struct 96.2 0.0049 1.7E-07 46.0 4.3 26 49-74 14-39 (223)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.94 E-value=9.8e-26 Score=191.98 Aligned_cols=177 Identities=17% Similarity=0.155 Sum_probs=133.2
Q ss_pred ccchhHHHHHHHHHhcC-CCCeeEEEEEecCCCcHHHHHHHHHH----HhcCCCCceEeeccccccccccCchHHHHHHH
Q 039455 29 VGIASRMEKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYN----TLKDQFEASSFLANVREVSVTRGLVPLQEQLL 103 (216)
Q Consensus 29 vgR~~~~~~l~~~l~~~-~~~~~~i~I~G~~GiGKTtL~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (216)
+||+.++++|.++|... ....++|+|+|++|+||||||+.+++ ++..+|+.+.|+. ++.... .+...+...++
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~-~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP-KSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST-THHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE-ECCCCC-CCHHHHHHHHH
Confidence 49999999999998754 34579999999999999999999996 6788899999995 333211 34667777888
Q ss_pred HHHHhhcc---c---cccchhhhHHHHHHHhCCc-eEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccC
Q 039455 104 SEVLMERN---L---IIWDVHKGINLIRWRLCRK-RVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHG 176 (216)
Q Consensus 104 ~~~~~~~~---~---~~~~~~~~~~~l~~~l~~~-~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~ 176 (216)
..+..... . ...+...+...+.+.+.++ ++||||||+|..+++ .+.. .+|++||+|||+..++....
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCC
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcC
Confidence 87765422 1 1112334578889999996 999999999998865 2221 26899999999998887764
Q ss_pred -CcceEEecCCChHHHHHHHhhhhcCCCCCchhHhhhcc
Q 039455 177 -VTNIYKVRGLDYVEALQLFHLKVSKGKQPTDDRVELSK 214 (216)
Q Consensus 177 -~~~~~~l~~l~~~~~~~ll~~~~~~~~~~~~~~~~l~~ 214 (216)
....+++++|+.+++++||.+.++.... .+.+.++++
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~ 320 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLN 320 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHH
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHH
Confidence 3467999999999999999999876542 244444443
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.88 E-value=7.5e-22 Score=181.39 Aligned_cols=186 Identities=23% Similarity=0.284 Sum_probs=132.0
Q ss_pred CCCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH---hcCCCCc-eEeeccccccccccCc
Q 039455 20 TFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT---LKDQFEA-SSFLANVREVSVTRGL 95 (216)
Q Consensus 20 ~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~ 95 (216)
..|..+..|+||++++++|.++|.......++++|+|++|+||||||++++++ ...+|+. +.|+. .+... ....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~ 195 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQD-KSGL 195 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCC-HHHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcC-chHH
Confidence 45666778999999999999999755566789999999999999999999876 3445665 55765 33211 1122
Q ss_pred hHHHHHHHHHHHhhcc---ccccchhhhHHHHHHHhCCc--eEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCch
Q 039455 96 VPLQEQLLSEVLMERN---LIIWDVHKGINLIRWRLCRK--RVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEH 170 (216)
Q Consensus 96 ~~~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~l~~~--~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~ 170 (216)
......++..+..... ....+.......+...+.++ ++||||||+|...++..+ .++++||+|||+..
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~ 268 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKS 268 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTT
T ss_pred HHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHH
Confidence 3334445555443321 11234566777888888877 999999999998766553 46899999999998
Q ss_pred hhhc-cCCcceEEecC-CChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455 171 VLKG-HGVTNIYKVRG-LDYVEALQLFHLKVSKGK-QPTDDRVELSK 214 (216)
Q Consensus 171 ~~~~-~~~~~~~~l~~-l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~ 214 (216)
++.. ......+.+++ |+.+++++||...++... ...+..++|++
T Consensus 269 ~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~ 315 (1249)
T 3sfz_A 269 VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIK 315 (1249)
T ss_dssp TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHH
T ss_pred HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHH
Confidence 8744 34567899996 999999999998875433 22234444443
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=167.02 Aligned_cols=172 Identities=22% Similarity=0.276 Sum_probs=119.3
Q ss_pred CCCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh---cCCCC-ceEeeccccccccccCc
Q 039455 20 TFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL---KDQFE-ASSFLANVREVSVTRGL 95 (216)
Q Consensus 20 ~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~ 95 (216)
..|+.+..||||+.+++.|.+++.......++++|+|++|+||||||..+++.. ..+|+ .+.|+. .+... ...+
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~-~~~~ 195 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQD-KSGL 195 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCC-HHHH
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCc-hHHH
Confidence 446667889999999999999987544567899999999999999999998753 55675 578876 32211 1111
Q ss_pred hHHHHHHHHHHHhhc---cccccchhhhHHHHHHHhCC--ceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCch
Q 039455 96 VPLQEQLLSEVLMER---NLIIWDVHKGINLIRWRLCR--KRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEH 170 (216)
Q Consensus 96 ~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~l~~--~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~ 170 (216)
......++..+.... .....+.......+...+.+ ++++|||||+|....+..+ .++++||+|||+..
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGG
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcH
Confidence 112222222222111 11223445556667777765 6899999999997766543 46799999999988
Q ss_pred hhhccCCcceEEe---cCCChHHHHHHHhhhhcC
Q 039455 171 VLKGHGVTNIYKV---RGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 171 ~~~~~~~~~~~~l---~~l~~~~~~~ll~~~~~~ 201 (216)
+..... ...+++ ++|+.+++++||...++.
T Consensus 269 ~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~ 301 (591)
T 1z6t_A 269 VTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNM 301 (591)
T ss_dssp GGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTS
T ss_pred HHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCC
Confidence 766542 344555 489999999999998865
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.85 E-value=7.1e-21 Score=168.28 Aligned_cols=162 Identities=19% Similarity=0.114 Sum_probs=116.1
Q ss_pred cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHH--HhcCCCCc-eEeeccccccccccCchHHHHHH
Q 039455 26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYN--TLKDQFEA-SSFLANVREVSVTRGLVPLQEQL 102 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 102 (216)
+..+||+.+++.|.++|... +..++++|+||+|+||||||+.+++ ++..+|+. ++|+. ++. ..+...+...+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs~---~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKN---CNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CCC---SSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE-eCC---CCCHHHHHHHH
Confidence 34599999999999998753 2368999999999999999999996 46677886 78886 332 33444445555
Q ss_pred HHHHHhhcc---c-------cccchhhhHHHHHHHh---CCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455 103 LSEVLMERN---L-------IIWDVHKGINLIRWRL---CRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDE 169 (216)
Q Consensus 103 ~~~~~~~~~---~-------~~~~~~~~~~~l~~~l---~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~ 169 (216)
...+..... . ...+.+.....+...+ .++++||||||+|..+.+..+. ++++||+|||+.
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~ 275 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCS
T ss_pred HHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC-------CCeEEEEeccCh
Confidence 443322110 0 0112334455566655 6789999999999988887753 579999999999
Q ss_pred hhhhccCCcceEEec------CCChHHHHHHHhhhh
Q 039455 170 HVLKGHGVTNIYKVR------GLDYVEALQLFHLKV 199 (216)
Q Consensus 170 ~~~~~~~~~~~~~l~------~l~~~~~~~ll~~~~ 199 (216)
.++........+.++ +|+.+|+++||.+..
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~ 311 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc
Confidence 877543222345666 999999999999884
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.66 E-value=6.5e-16 Score=123.92 Aligned_cols=173 Identities=14% Similarity=0.078 Sum_probs=105.0
Q ss_pred CCCCCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccc--ccccCc
Q 039455 18 NPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREV--SVTRGL 95 (216)
Q Consensus 18 ~~~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 95 (216)
.+.++..+..|+||+.+++.|.+++..+ +.++|+|++|+|||+|++.+++... ..|+.+.... ....+.
T Consensus 4 ~~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 4 DLRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCRELYAERGHITR 74 (350)
T ss_dssp CCSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHHHHHHTTTCBCH
T ss_pred CCCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEeecccccccCCCH
Confidence 4456667788999999999999988753 6999999999999999999998751 5565432211 001122
Q ss_pred hHHHHHHHHHHHh---------------hccc--cccchhhhHHHHHHHhCC-ceEEEEEeCCCCHH--------HHHHh
Q 039455 96 VPLQEQLLSEVLM---------------ERNL--IIWDVHKGINLIRWRLCR-KRVLVVLDDVDQLE--------QLQAL 149 (216)
Q Consensus 96 ~~~~~~l~~~~~~---------------~~~~--~~~~~~~~~~~l~~~l~~-~~~llvlDd~~~~~--------~~~~l 149 (216)
..+...+...+.. .... ...+.......+...... ++.+|||||++... .+..+
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 2333333332211 0000 012333344445444432 48999999997643 22222
Q ss_pred hcCCCCCCCCcEEEEEeCCchhhhc----------c--CCcceEEecCCChHHHHHHHhhhh
Q 039455 150 AGNHDWFGFGSRIIITTRDEHVLKG----------H--GVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 150 ~~~~~~~~~~~~il~tsr~~~~~~~----------~--~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
+..+....++..+|+|++....... + .....+++.||+.+++.+++....
T Consensus 155 L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~ 216 (350)
T 2qen_A 155 FAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF 216 (350)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHH
Confidence 2211111246788999887543111 1 123589999999999999998754
No 6
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.66 E-value=4.8e-15 Score=120.54 Aligned_cols=167 Identities=13% Similarity=0.063 Sum_probs=109.9
Q ss_pred ccccccchhHHHHHHHHHhc--CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC--------CCceEeecccccccccc-
Q 039455 25 VDGLVGIASRMEKMNGYLEA--GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--------FEASSFLANVREVSVTR- 93 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~--~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~- 93 (216)
+..|+||+.+++.+..++.. .......+.|+||+|+|||+|++.+++.+... ....+|+.+.. ..
T Consensus 19 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~ 94 (384)
T 2qby_B 19 FKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE----VGG 94 (384)
T ss_dssp CSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH----HCS
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc----CCC
Confidence 47899999999999988764 23445799999999999999999999876332 22344544221 22
Q ss_pred CchHHHHHHHHHHHhhccc-cccchhhhHHHHHHHhCCceEEEEEeCCCCHHH-------HHHhhcCCCCCCCCcEEEEE
Q 039455 94 GLVPLQEQLLSEVLMERNL-IIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ-------LQALAGNHDWFGFGSRIIIT 165 (216)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~-------~~~l~~~~~~~~~~~~il~t 165 (216)
....+...++..+...... ...+.......+...+...+.+|+|||++.... +..+.... .+..+|+|
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~ 170 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMI 170 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEE
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEE
Confidence 4445556666665332111 112234456666677776655999999976532 33344332 56788889
Q ss_pred eCCchhhhcc------CCcceEEecCCChHHHHHHHhhhh
Q 039455 166 TRDEHVLKGH------GVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 166 sr~~~~~~~~------~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
|+...+...+ .....+.++|++.++..++|...+
T Consensus 171 t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~ 210 (384)
T 2qby_B 171 SNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA 210 (384)
T ss_dssp CSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHH
T ss_pred ECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHH
Confidence 8876432211 112489999999999999999864
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.65 E-value=7.3e-16 Score=126.45 Aligned_cols=172 Identities=15% Similarity=0.108 Sum_probs=105.6
Q ss_pred cccccccchhHHHHHHHHH-hcC--C--CCeeEEEE--EecCCCcHHHHHHHHHHHhcCC-----CC-ceEeeccccccc
Q 039455 24 AVDGLVGIASRMEKMNGYL-EAG--L--DDVRFIGI--CGMGGIGKTTLAKVLYNTLKDQ-----FE-ASSFLANVREVS 90 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l-~~~--~--~~~~~i~I--~G~~GiGKTtL~~~~~~~~~~~-----~~-~~~~~~~~~~~~ 90 (216)
.+..|+||+.+++.|..++ ... + .....++| +|++|+|||+|++.+++..... +. .+.|+.+..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 96 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN--- 96 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG---
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC---
Confidence 4578999999999999988 521 2 24567888 9999999999999999876542 12 245554222
Q ss_pred cccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhC--CceEEEEEeCCCCH--------HHHHHhhcCCCCC---C
Q 039455 91 VTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC--RKRVLVVLDDVDQL--------EQLQALAGNHDWF---G 157 (216)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~--------~~~~~l~~~~~~~---~ 157 (216)
......+...++..+....+....+.......+...+. +++++|||||++.. +.+..+...+... +
T Consensus 97 -~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 97 -APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp -CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred -CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 23445566666666533211111223334445555553 57999999999754 2233332222111 1
Q ss_pred --CCcEEEEEeCCchhhhcc---------CCcceEEecCCChHHHHHHHhhhh
Q 039455 158 --FGSRIIITTRDEHVLKGH---------GVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 158 --~~~~il~tsr~~~~~~~~---------~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
.+..+|+||+...+...+ .....+.++||+.+++.++|...+
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRA 228 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHH
Confidence 345577788765432111 112339999999999999997543
No 8
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.63 E-value=2.8e-15 Score=121.75 Aligned_cols=172 Identities=13% Similarity=0.135 Sum_probs=107.9
Q ss_pred cccccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCC------CCceEeeccccccccccCc
Q 039455 24 AVDGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLANVREVSVTRGL 95 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 95 (216)
.+..|+||+.+++.+..++... ......+.|+||+|+|||+|++.+++..... ....+|+.+.. ....
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH----RETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT----SCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc----CCCH
Confidence 3478999999999999988543 3456789999999999999999999876432 12334444221 2344
Q ss_pred hHHHHHHHHHHHhhccccccchhhhHHHHHHHhC--CceEEEEEeCCCCHHH-------HHHhhcCCCCC--CCCcEEEE
Q 039455 96 VPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC--RKRVLVVLDDVDQLEQ-------LQALAGNHDWF--GFGSRIII 164 (216)
Q Consensus 96 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~~~-------~~~l~~~~~~~--~~~~~il~ 164 (216)
..+...++..+....+....+.......+...+. +++.+|+|||++.... +..+....... ..+..+|+
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 4555666666533222222223444555555553 4589999999986532 22223222111 34567788
Q ss_pred EeCCchhhhcc-----C-C-cceEEecCCChHHHHHHHhhhh
Q 039455 165 TTRDEHVLKGH-----G-V-TNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 165 tsr~~~~~~~~-----~-~-~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
||+...+...+ . . ...+.++|++.++..+++...+
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~ 214 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRA 214 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH
Confidence 88766332211 1 1 2579999999999999998764
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=1.4e-15 Score=123.48 Aligned_cols=173 Identities=16% Similarity=0.136 Sum_probs=104.2
Q ss_pred CcccccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC---CceEeeccccccccccCchH
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF---EASSFLANVREVSVTRGLVP 97 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 97 (216)
..+..|+||+.+++.+..++... ......++|+|++|+|||||++.+++.+...+ ...+|+.+.. ......
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~----~~~~~~ 92 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ----IDTPYR 92 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH----HCSHHH
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC----CCCHHH
Confidence 34578999999999999988742 34567999999999999999999998765432 2344554221 122223
Q ss_pred HHHHHHHHHHhhccccccchhhhHHHHHHHhC--CceEEEEEeCCCCH------HHHHHhhcCCCC-CCCCcEEEEEeCC
Q 039455 98 LQEQLLSEVLMERNLIIWDVHKGINLIRWRLC--RKRVLVVLDDVDQL------EQLQALAGNHDW-FGFGSRIIITTRD 168 (216)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~------~~~~~l~~~~~~-~~~~~~il~tsr~ 168 (216)
....++..+.........+.......+...+. +++.+|+|||++.. +.+..+...+.. ...+..+|++|+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 33333332211111111122333444444443 34899999999653 223333222210 1345677888887
Q ss_pred chhhhccC-------CcceEEecCCChHHHHHHHhhhh
Q 039455 169 EHVLKGHG-------VTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 169 ~~~~~~~~-------~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
..+...+. ....+.++|++.++..+++...+
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 65433221 12589999999999999998754
No 10
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.62 E-value=1e-14 Score=118.68 Aligned_cols=172 Identities=13% Similarity=0.124 Sum_probs=108.4
Q ss_pred cccccccchhHHHHHHHHHhcC--CCCee--EEEEEecCCCcHHHHHHHHHHHhcCCC-CceEeeccccccccccCchHH
Q 039455 24 AVDGLVGIASRMEKMNGYLEAG--LDDVR--FIGICGMGGIGKTTLAKVLYNTLKDQF-EASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~--~~~~~--~i~I~G~~GiGKTtL~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 98 (216)
.++.++||+.+++.+..++... +..+. .++|+|++|+|||||++.+++...... ..+.++.+.. ......+
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~----~~~~~~~ 90 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI----YRNFTAI 90 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT----CCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc----CCCHHHH
Confidence 3477999999999999988742 22234 899999999999999999999876542 2344444221 2333445
Q ss_pred HHHHHHHHHhhccccccchhhhHHHHHHHhC--CceEEEEEeCCCCH--HHHHHhhcCCCCC-C---CCcEEEEEeCCch
Q 039455 99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLC--RKRVLVVLDDVDQL--EQLQALAGNHDWF-G---FGSRIIITTRDEH 170 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~--~~~~llvlDd~~~~--~~~~~l~~~~~~~-~---~~~~il~tsr~~~ 170 (216)
...++..+....+....+.......+...+. +++.+|+|||++.. +....+...+... . .+..+|++|+...
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 5555554422211111223334444444443 56889999999764 3344443333211 1 3677888888775
Q ss_pred hhhccC-------CcceEEecCCChHHHHHHHhhhh
Q 039455 171 VLKGHG-------VTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 171 ~~~~~~-------~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
+...+. ....+.++|++.++..+++...+
T Consensus 171 ~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~ 206 (389)
T 1fnn_A 171 VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA 206 (389)
T ss_dssp HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 433321 12379999999999999998765
No 11
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.61 E-value=4.7e-15 Score=119.14 Aligned_cols=172 Identities=15% Similarity=0.127 Sum_probs=101.1
Q ss_pred CCCCCCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc-cccCch
Q 039455 18 NPTFPSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS-VTRGLV 96 (216)
Q Consensus 18 ~~~~~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (216)
.+.++..+..|+||+.+++.|.+ +.. +.++|+|++|+|||+|++.+++..... ..|+....... ...+..
T Consensus 5 ~~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 5 DTSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLRKFEERNYISYK 75 (357)
T ss_dssp CSSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGGGGTTCSCCCHH
T ss_pred CCCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEchhhccccCCCHH
Confidence 34555677889999999999999 653 599999999999999999999876432 46665322100 001222
Q ss_pred HHHHHHHHHHHh-------------hc---cc-----c-------ccchhhhHHHHHHHhCCceEEEEEeCCCCHHH---
Q 039455 97 PLQEQLLSEVLM-------------ER---NL-----I-------IWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ--- 145 (216)
Q Consensus 97 ~~~~~l~~~~~~-------------~~---~~-----~-------~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~--- 145 (216)
.....+...+.. .. .. . ..........+..... ++.+|||||++..+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 333333332211 00 00 0 1122223333333222 489999999965421
Q ss_pred --HHHhhcCCCCCCCCcEEEEEeCCchhhhc----------c-C-CcceEEecCCChHHHHHHHhhhh
Q 039455 146 --LQALAGNHDWFGFGSRIIITTRDEHVLKG----------H-G-VTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 146 --~~~l~~~~~~~~~~~~il~tsr~~~~~~~----------~-~-~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
+..++..+.....+..+|+|++....... + + ....+++.||+.+++.+++....
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~ 222 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGF 222 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHH
Confidence 11111111111236789999987643211 1 1 23689999999999999998754
No 12
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.55 E-value=5.7e-14 Score=106.59 Aligned_cols=182 Identities=13% Similarity=0.122 Sum_probs=101.1
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQ 101 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (216)
|.....++||+..++.+..++.... ....++|+|++|+|||+|++.++..+........+. .. .......
T Consensus 19 p~~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~ 88 (250)
T 1njg_A 19 PQTFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP--CG-------VCDNCRE 88 (250)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSC--CS-------CSHHHHH
T ss_pred CccHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC--Cc-------ccHHHHH
Confidence 3345679999999999999987642 235899999999999999999998765432111100 00 0000000
Q ss_pred HHHHHHhh-cccccc--chhhhHHHHHHHh-----CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCchh
Q 039455 102 LLSEVLME-RNLIIW--DVHKGINLIRWRL-----CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEHV 171 (216)
Q Consensus 102 l~~~~~~~-~~~~~~--~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~~ 171 (216)
+....... ...... ........+...+ .+++.+|||||++.. +.+..+...+.....+..+|+||+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 00000000 000000 0001111222222 245789999999753 3444444333322456778888876532
Q ss_pred h-hc-cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 172 L-KG-HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 172 ~-~~-~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
. .. ......++++|++.++..+++...+...+ .+++.++.|+
T Consensus 169 ~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~ 214 (250)
T 1njg_A 169 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLA 214 (250)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHH
T ss_pred CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 1 11 12347899999999999999987764333 2333444443
No 13
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.52 E-value=2.1e-13 Score=102.18 Aligned_cols=158 Identities=18% Similarity=0.263 Sum_probs=93.5
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec-cccccccccCchHHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA-NVREVSVTRGLVPLQE 100 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 100 (216)
|.....++||+..++.+..++.... .+.+.|+|++|+|||++++.++..+........++. .... .... ....
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~ 86 (226)
T 2chg_A 13 PRTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASD---ERGI-DVVR 86 (226)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTC---TTCH-HHHH
T ss_pred CCCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccc---ccCh-HHHH
Confidence 3445679999999999999988642 234999999999999999999987643322222221 1111 1111 1111
Q ss_pred HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCchhh-hc-cC
Q 039455 101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEHVL-KG-HG 176 (216)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~~~-~~-~~ 176 (216)
..+....... .....++.+|+|||++.. +....+...+.....+..+|+||+..... .. ..
T Consensus 87 ~~~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~ 151 (226)
T 2chg_A 87 HKIKEFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQS 151 (226)
T ss_dssp HHHHHHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHH
Confidence 1111100000 011256789999999754 22333332222123567788888765321 11 12
Q ss_pred CcceEEecCCChHHHHHHHhhhhc
Q 039455 177 VTNIYKVRGLDYVEALQLFHLKVS 200 (216)
Q Consensus 177 ~~~~~~l~~l~~~~~~~ll~~~~~ 200 (216)
....++++|++.++..+++...+.
T Consensus 152 r~~~i~~~~~~~~~~~~~l~~~~~ 175 (226)
T 2chg_A 152 RCAVFRFKPVPKEAMKKRLLEICE 175 (226)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHH
T ss_pred hCceeecCCCCHHHHHHHHHHHHH
Confidence 335899999999999999987764
No 14
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.3e-12 Score=103.16 Aligned_cols=169 Identities=12% Similarity=0.028 Sum_probs=100.8
Q ss_pred cccccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-----C--ceEeeccccccccccCch
Q 039455 26 DGLVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-----E--ASSFLANVREVSVTRGLV 96 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~ 96 (216)
..+.||++|++.|...|... ...++.+.|+|++|+|||++++.++..+.... + ..+++.+.. ..+..
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~----~~t~~ 95 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE----LAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC----CC--H
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc----cCCHH
Confidence 34899999999999887643 45678999999999999999999999875422 1 223333222 23445
Q ss_pred HHHHHHHHHHHhhccccccchhhhHHHHHHH--hCCceEEEEEeCCCCH---HHHHHhhcCCCCCCCCcEEEEEeCCchh
Q 039455 97 PLQEQLLSEVLMERNLIIWDVHKGINLIRWR--LCRKRVLVVLDDVDQL---EQLQALAGNHDWFGFGSRIIITTRDEHV 171 (216)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--l~~~~~llvlDd~~~~---~~~~~l~~~~~~~~~~~~il~tsr~~~~ 171 (216)
.....++.++.+...........+...+... -.+++++++||+++.. +.+..++...........+|.++...+.
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 5666777776443211111222223333332 1356899999999865 2233332111001223345555554322
Q ss_pred h---------hccCCcceEEecCCChHHHHHHHhhhh
Q 039455 172 L---------KGHGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 172 ~---------~~~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
. +++ ....+.++|++.+|..+++..++
T Consensus 176 ~~~~L~~~v~SR~-~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 176 IREQINIMPSLKA-HFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CHHHHHTCHHHHT-TEEEEECCCCCHHHHHHHHHHHH
T ss_pred chhhcchhhhccC-CceEEEeCCCCHHHHHHHHHHHH
Confidence 1 122 12579999999999999998765
No 15
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.40 E-value=2.1e-12 Score=94.46 Aligned_cols=146 Identities=10% Similarity=0.068 Sum_probs=84.9
Q ss_pred cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-------CCceEeeccccccccccCch
Q 039455 24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-------FEASSFLANVREVSVTRGLV 96 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 96 (216)
....++||+++++.+.+.+... ....+.|+|++|+|||+|++.+++.+... .....++. ...........
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 96 (195)
T 1jbk_A 20 KLDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD-MGALVAGAKYR 96 (195)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC-HHHHHTTTCSH
T ss_pred cccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee-HHHHhccCCcc
Confidence 3456999999999999988753 34678999999999999999999876431 11222322 11100000000
Q ss_pred HHHHHHHHHHHhhccccccchhhhHHH-HHHHh-CCceEEEEEeCCCCHH-------------HHHHhhcCCCCCCCCcE
Q 039455 97 PLQEQLLSEVLMERNLIIWDVHKGINL-IRWRL-CRKRVLVVLDDVDQLE-------------QLQALAGNHDWFGFGSR 161 (216)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~-l~~~l-~~~~~llvlDd~~~~~-------------~~~~l~~~~~~~~~~~~ 161 (216)
. ........ +.... .+++.+|+|||++... .+..+.. ..+..
T Consensus 97 ~------------------~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-----~~~~~ 153 (195)
T 1jbk_A 97 G------------------EFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-----RGELH 153 (195)
T ss_dssp H------------------HHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH-----TTSCC
T ss_pred c------------------cHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-----cCCeE
Confidence 0 00111111 11111 3567899999997542 1222222 23456
Q ss_pred EEEEeCCchhhh-------ccCCcceEEecCCChHHHHHHH
Q 039455 162 IIITTRDEHVLK-------GHGVTNIYKVRGLDYVEALQLF 195 (216)
Q Consensus 162 il~tsr~~~~~~-------~~~~~~~~~l~~l~~~~~~~ll 195 (216)
+|+||....... .......+.+++++.++..+++
T Consensus 154 ~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 154 CVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp EEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred EEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 777776554211 1123347999999999988775
No 16
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.38 E-value=3.5e-12 Score=99.65 Aligned_cols=170 Identities=17% Similarity=0.211 Sum_probs=98.9
Q ss_pred CCCcccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccc
Q 039455 21 FPSAVDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREV 89 (216)
Q Consensus 21 ~~~~~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
++.....++|.+..++.|..++... ......+.|+||+|+|||+|++.++..+...+ ..+. ....
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~---~~v~-~~~~ 87 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATF---IRVV-GSEL 87 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEE---EEEE-GGGG
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hHHH
Confidence 3445678999999999998876431 13456799999999999999999998764321 1111 1111
Q ss_pred ccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCC
Q 039455 90 SVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNH 153 (216)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~ 153 (216)
......... ......+.......+.+|+|||++.. ..+..++..+
T Consensus 88 --~~~~~~~~~-----------------~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 148 (285)
T 3h4m_A 88 --VKKFIGEGA-----------------SLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM 148 (285)
T ss_dssp --CCCSTTHHH-----------------HHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH
T ss_pred --HHhccchHH-----------------HHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh
Confidence 001100000 11112222333356789999999654 1222332221
Q ss_pred C--CCCCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhc
Q 039455 154 D--WFGFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELS 213 (216)
Q Consensus 154 ~--~~~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~ 213 (216)
. ....+..+|.||..+..... ......+.+++++.++..++++....... ..+..+.+|+
T Consensus 149 ~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~ 216 (285)
T 3h4m_A 149 DGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIA 216 (285)
T ss_dssp HTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHH
T ss_pred hCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHH
Confidence 1 11235667778876543221 12345799999999999999998775544 2223444444
No 17
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.34 E-value=4.5e-12 Score=100.46 Aligned_cols=157 Identities=20% Similarity=0.314 Sum_probs=93.4
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC--ceEeeccccccccccCchHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE--ASSFLANVREVSVTRGLVPLQ 99 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 99 (216)
|.....++||+..++.+..++..+. .+.+.|+||+|+|||++++.++..+..... ...++.. .. ... ....
T Consensus 17 p~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~-~~---~~~-~~~i 89 (323)
T 1sxj_B 17 PQVLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNA-SD---DRG-IDVV 89 (323)
T ss_dssp CSSGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECT-TS---CCS-HHHH
T ss_pred CCCHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecC-cc---ccC-hHHH
Confidence 3445679999999999999987642 234999999999999999999987643211 1222221 11 111 1111
Q ss_pred HHHHHHHHhhccccccchhhhHHHHHHHh-CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCchh-hhc-
Q 039455 100 EQLLSEVLMERNLIIWDVHKGINLIRWRL-CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEHV-LKG- 174 (216)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~~-~~~- 174 (216)
..++..+.... ..+ .+++.++||||++.. +....+...+.....++.+|++|+...- ...
T Consensus 90 ~~~~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l 154 (323)
T 1sxj_B 90 RNQIKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPL 154 (323)
T ss_dssp HTHHHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHH
Confidence 11111111000 012 345789999999754 2333333222212356778888876432 111
Q ss_pred cCCcceEEecCCChHHHHHHHhhhhc
Q 039455 175 HGVTNIYKVRGLDYVEALQLFHLKVS 200 (216)
Q Consensus 175 ~~~~~~~~l~~l~~~~~~~ll~~~~~ 200 (216)
......++++|++.++..+++...+.
T Consensus 155 ~sr~~~i~~~~~~~~~~~~~l~~~~~ 180 (323)
T 1sxj_B 155 QSQCAILRYSKLSDEDVLKRLLQIIK 180 (323)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred HhhceEEeecCCCHHHHHHHHHHHHH
Confidence 12345899999999999999987653
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.30 E-value=8.5e-12 Score=99.04 Aligned_cols=168 Identities=18% Similarity=0.242 Sum_probs=96.4
Q ss_pred CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCc--eEeeccccccccccCchHHHH
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQE 100 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 100 (216)
..-.+++|++..++.+..++..+ ..+.+.|+||+|+|||++++.++..+...... ...+. ... .... ....
T Consensus 22 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~~~---~~~~-~~~~ 94 (327)
T 1iqp_A 22 QRLDDIVGQEHIVKRLKHYVKTG--SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-ASD---ERGI-NVIR 94 (327)
T ss_dssp CSTTTCCSCHHHHHHHHHHHHHT--CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TTC---HHHH-HTTH
T ss_pred CCHHHhhCCHHHHHHHHHHHHcC--CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-ccc---cCch-HHHH
Confidence 34567999999999999988864 23459999999999999999999876432111 12221 111 0000 0000
Q ss_pred HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCchh-hhcc-C
Q 039455 101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEHV-LKGH-G 176 (216)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~~-~~~~-~ 176 (216)
..+..+... .....+++.++++||++.. +....+...+.....++.+|+||....- ...+ .
T Consensus 95 ~~~~~~~~~---------------~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~s 159 (327)
T 1iqp_A 95 EKVKEFART---------------KPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS 159 (327)
T ss_dssp HHHHHHHHS---------------CCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHHhh---------------CCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHh
Confidence 000000000 0011246789999999754 3333333322222346778888876532 1111 1
Q ss_pred CcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhh
Q 039455 177 VTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVEL 212 (216)
Q Consensus 177 ~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l 212 (216)
....++++|++.++..+++...+...+ .+++.++.|
T Consensus 160 r~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l 197 (327)
T 1iqp_A 160 RCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAI 197 (327)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHH
T ss_pred hCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 235899999999999999987764433 233444444
No 19
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.28 E-value=4.3e-11 Score=94.64 Aligned_cols=167 Identities=16% Similarity=0.213 Sum_probs=100.0
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-C-ceEeeccccccccccCchHHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-E-ASSFLANVREVSVTRGLVPLQ 99 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 99 (216)
|....+++|++..++.+..++..+ ..+.+.++||+|+|||++++.++..+.... . ....+. .............
T Consensus 13 p~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~- 88 (319)
T 2chq_A 13 PRTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERGIDVVRHK- 88 (319)
T ss_dssp CSSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTCTTTSSHH-
T ss_pred CCCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccChHHHHHH-
Confidence 445577999999999999988754 223499999999999999999998763221 1 111121 1110000011111
Q ss_pred HHHHHHHHhhccccccchhhhHHHHHH--Hh-CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hhh
Q 039455 100 EQLLSEVLMERNLIIWDVHKGINLIRW--RL-CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VLK 173 (216)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~--~l-~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~ 173 (216)
...+.. .+ .+++.+++|||++.. +....+...+.....++.+|++|.... +..
T Consensus 89 ---------------------~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~ 147 (319)
T 2chq_A 89 ---------------------IKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIE 147 (319)
T ss_dssp ---------------------HHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCH
T ss_pred ---------------------HHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcch
Confidence 111110 11 245789999999754 334555554443345677787776543 211
Q ss_pred c-cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 174 G-HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 174 ~-~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
. ......+++.|++.++..+++...+...+ .+++.++.|+
T Consensus 148 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~ 190 (319)
T 2chq_A 148 PIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALI 190 (319)
T ss_dssp HHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHH
T ss_pred HHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 1 12335899999999999999987764433 2344444443
No 20
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.27 E-value=6.5e-11 Score=94.18 Aligned_cols=170 Identities=16% Similarity=0.134 Sum_probs=98.5
Q ss_pred CCcccccccchhHHHHHHHHHh----------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455 22 PSAVDGLVGIASRMEKMNGYLE----------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV 91 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~----------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
+.....++|.+..++.|...+. ........+.|+||+|+|||+||+.+++.....| +.+. ...
T Consensus 14 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~---~~v~-~~~--- 86 (322)
T 3eie_A 14 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSD--- 86 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEE---EEEE-HHH---
T ss_pred CCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCE---EEEc-hHH---
Confidence 3446779999999999988762 1122346899999999999999999998764321 1221 111
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH-------------HHHHhh---cCCCC
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE-------------QLQALA---GNHDW 155 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~-------------~~~~l~---~~~~~ 155 (216)
+..... ..........+......++.+|+|||++.+. ....++ ..+..
T Consensus 87 ----------l~~~~~------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 87 ----------LVSKWM------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp ----------HHTTTG------GGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred ----------Hhhccc------chHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 100000 0001111122222333567899999997431 122222 22211
Q ss_pred CCCCcEEEEEeCCchhhhc---cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 156 FGFGSRIIITTRDEHVLKG---HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 156 ~~~~~~il~tsr~~~~~~~---~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
...+..+|.||..+..+.. ......+.+++.+.++..++|+..+.... .++..+..|++
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~ 214 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGA 214 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 2344556667765433211 12457789999999999999998875543 24456666654
No 21
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.25 E-value=9.9e-11 Score=94.44 Aligned_cols=171 Identities=12% Similarity=0.086 Sum_probs=95.8
Q ss_pred CCCcccccccchhHHHHHHHHHhc----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc
Q 039455 21 FPSAVDGLVGIASRMEKMNGYLEA----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS 90 (216)
Q Consensus 21 ~~~~~~~~vgR~~~~~~l~~~l~~----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (216)
++.....++|.+..++.|...+.. .......++|+|++|+|||+||+.++...... .+.+. .....
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~---~~~i~-~~~l~ 154 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGAT---FFSIS-ASSLT 154 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCE---EEEEE-GGGGC
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCe---EEEEe-hHHhh
Confidence 344567799999999999887642 11335689999999999999999999876321 12222 11110
Q ss_pred cccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCC---C
Q 039455 91 VTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNH---D 154 (216)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~---~ 154 (216)
..+....... ....+......++.+|+|||++.+ .....++..+ .
T Consensus 155 --~~~~g~~~~~-----------------~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 155 --SKWVGEGEKM-----------------VRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp --CSSTTHHHHH-----------------HHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC--
T ss_pred --ccccchHHHH-----------------HHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc
Confidence 0110000111 111122222356789999999543 1122222211 1
Q ss_pred -CCCCCcEEEEEeCCchhhhc---cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 155 -WFGFGSRIIITTRDEHVLKG---HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 155 -~~~~~~~il~tsr~~~~~~~---~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
....+..+|.||........ ......+.+++.+.++..+++...+...+ .+++.++.|++
T Consensus 216 ~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~ 281 (357)
T 3d8b_A 216 TSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQ 281 (357)
T ss_dssp --CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHH
T ss_pred ccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHH
Confidence 11234556667765432111 12456789999999999999987664332 33445555543
No 22
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.24 E-value=1.2e-10 Score=94.03 Aligned_cols=165 Identities=14% Similarity=0.124 Sum_probs=92.2
Q ss_pred cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHH
Q 039455 24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLL 103 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 103 (216)
...+++||+..++.+...+..+ .....+.|+|++|+|||++++.++..+....... ... + .....+..+.
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~-~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~-~-------~~~~~~~~~~ 83 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLG-RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATP-C-------GVCDNCREIE 83 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHT-CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSC-C-------SSSHHHHHHH
T ss_pred chhhccCcHHHHHHHHHHHHhC-CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCC-C-------cccHHHHHHh
Confidence 3456999999999999988754 2235789999999999999999998765322110 000 0 0000000000
Q ss_pred HH----HHhhccccccchhhhHHHHHHHh-----CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCchh-
Q 039455 104 SE----VLMERNLIIWDVHKGINLIRWRL-----CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEHV- 171 (216)
Q Consensus 104 ~~----~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~~- 171 (216)
.. +...........+. ...+...+ .+++.+++|||++.. +....++..+.....+..+|++|+...-
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVED-TRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSC-HHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGS
T ss_pred ccCCCceEEecccccCCHHH-HHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 00 00000000001111 22222222 245789999999754 3344443333222345667777765432
Q ss_pred hhc-cCCcceEEecCCChHHHHHHHhhhh
Q 039455 172 LKG-HGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 172 ~~~-~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
... ......+++++++.++..+++...+
T Consensus 163 ~~~l~sr~~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 163 PVTILSRCLQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred cHHHHhheeEeeCCCCCHHHHHHHHHHHH
Confidence 111 1234789999999999999998765
No 23
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.23 E-value=7.5e-11 Score=97.68 Aligned_cols=168 Identities=16% Similarity=0.158 Sum_probs=94.8
Q ss_pred ccccc-cchhHH--HHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCc--eEeeccccccccccCchHHH
Q 039455 25 VDGLV-GIASRM--EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQ 99 (216)
Q Consensus 25 ~~~~v-gR~~~~--~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 99 (216)
-+.|+ |..... ..+..+...... ...++|+|++|+|||||++.+++.+...++. +.++. .. .+.
T Consensus 104 fd~fv~g~~n~~a~~~~~~~a~~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~-~~---------~~~ 172 (440)
T 2z4s_A 104 FENFVVGPGNSFAYHAALEVAKHPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-SE---------KFL 172 (440)
T ss_dssp GGGCCCCTTTHHHHHHHHHHHHSTTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE-HH---------HHH
T ss_pred hhhcCCCCchHHHHHHHHHHHhCCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HH---------HHH
Confidence 34566 655443 234444443322 6789999999999999999999977554433 23332 11 122
Q ss_pred HHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----HHHHhhcCCCC-CCCCcEEEEEeCCch----
Q 039455 100 EQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----QLQALAGNHDW-FGFGSRIIITTRDEH---- 170 (216)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----~~~~l~~~~~~-~~~~~~il~tsr~~~---- 170 (216)
..+...+... ....+...+..++.+|+|||++... ....++..+.. ...+..||+||+.+.
T Consensus 173 ~~~~~~~~~~----------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~ 242 (440)
T 2z4s_A 173 NDLVDSMKEG----------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLS 242 (440)
T ss_dssp HHHHHHHHTT----------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCS
T ss_pred HHHHHHHHcc----------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHH
Confidence 2333222111 1122333344467799999996432 12222222110 134677888888632
Q ss_pred -----hhhccCCcceEEecCCChHHHHHHHhhhhcC--CCCCchhHhhhc
Q 039455 171 -----VLKGHGVTNIYKVRGLDYVEALQLFHLKVSK--GKQPTDDRVELS 213 (216)
Q Consensus 171 -----~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~--~~~~~~~~~~l~ 213 (216)
+.+++.....+.+++++.++..+++.+.+.. -..+++.+..|+
T Consensus 243 ~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la 292 (440)
T 2z4s_A 243 EFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVA 292 (440)
T ss_dssp SCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHH
T ss_pred HHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 2222223467899999999999999887632 223445555554
No 24
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.21 E-value=9.4e-10 Score=87.49 Aligned_cols=171 Identities=15% Similarity=0.100 Sum_probs=96.5
Q ss_pred CCcccccccchhHHHHHHHHHhc----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEA----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV 91 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
+.....++|.+...+.|...+.. .....+.+.|+||+|+|||+||+.++...... ..+.+. .....
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~--~~~~i~-~~~l~- 83 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSIS-SSDLV- 83 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSC--EEEEEE-CCSSC-
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCC--cEEEEE-hHHHH-
Confidence 34467799999999998876531 11224689999999999999999999876211 111221 11100
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhc---CCCC
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAG---NHDW 155 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~---~~~~ 155 (216)
..+. ..........+......++.+|+|||++.. .....++. .+..
T Consensus 84 -~~~~-----------------g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~ 145 (322)
T 1xwi_A 84 -SKWL-----------------GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 145 (322)
T ss_dssp -CSSC-----------------CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS
T ss_pred -hhhh-----------------hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc
Confidence 0000 000011111222222356789999999755 11222222 1211
Q ss_pred CCCCcEEEEEeCCchhhhc---cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 156 FGFGSRIIITTRDEHVLKG---HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 156 ~~~~~~il~tsr~~~~~~~---~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
...+..+|.||..+..... ......+.+++.+.++..++|+....... .++..++.|++
T Consensus 146 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~ 209 (322)
T 1xwi_A 146 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGR 209 (322)
T ss_dssp CCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHH
T ss_pred cCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 1234556666765432111 13457889999999999999988764433 24456666654
No 25
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=1e-10 Score=94.06 Aligned_cols=183 Identities=13% Similarity=0.125 Sum_probs=95.0
Q ss_pred CCcccccccchhHHHHHHHHH-hcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecc------------ccc
Q 039455 22 PSAVDGLVGIASRMEKMNGYL-EAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLAN------------VRE 88 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l-~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~------------~~~ 88 (216)
|..-..++|++...+.+..++ ..+ . .+.++|+||+|+||||+++.+++.+.........+.. +..
T Consensus 10 P~~~~~~vg~~~~~~~l~~~~~~~~-~-~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 10 PKSLNALSHNEELTNFLKSLSDQPR-D-LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp CCSGGGCCSCHHHHHHHHTTTTCTT-C-CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred CCCHHHhcCCHHHHHHHHHHHhhCC-C-CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 445577999999999999987 432 2 2339999999999999999999864322111111100 000
Q ss_pred --------ccc-ccCchH--HHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH--HHHHhhcCCCC
Q 039455 89 --------VSV-TRGLVP--LQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE--QLQALAGNHDW 155 (216)
Q Consensus 89 --------~~~-~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~~ 155 (216)
... ...... .....+..+...... .... .+. -+..++-+++||+++..+ ....+...+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV-----DFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhccc-----cccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 000 000000 011111111100000 0000 000 023467799999997652 22223322221
Q ss_pred CCCCcEEEEEeCCchh-hhcc-CCcceEEecCCChHHHHHHHhhhhcCCC--CC-chhHhhhc
Q 039455 156 FGFGSRIIITTRDEHV-LKGH-GVTNIYKVRGLDYVEALQLFHLKVSKGK--QP-TDDRVELS 213 (216)
Q Consensus 156 ~~~~~~il~tsr~~~~-~~~~-~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~-~~~~~~l~ 213 (216)
...+..+|++|++... ...+ .....++++|++.++..+++...+...+ .+ ++.++.|+
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~ 223 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIA 223 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Confidence 1346788888887532 1111 2237899999999999999987663332 23 44555544
No 26
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.20 E-value=8.9e-12 Score=94.55 Aligned_cols=158 Identities=14% Similarity=0.085 Sum_probs=88.4
Q ss_pred cccccccch---hHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHH
Q 039455 24 AVDGLVGIA---SRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQE 100 (216)
Q Consensus 24 ~~~~~vgR~---~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (216)
.-+.|+|+. ..++.+..+.... ....++|+|++|+|||+|++.++.........+.|+.. .... .....
T Consensus 26 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~-~~~~--~~~~~--- 97 (242)
T 3bos_A 26 TFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL-GIHA--SISTA--- 97 (242)
T ss_dssp STTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG-GGGG--GSCGG---
T ss_pred ChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-HHHH--HHHHH---
Confidence 446788743 5566666666542 45789999999999999999999877654344555542 1110 00000
Q ss_pred HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH--H--HHHhhcCCCCC-CCCc-EEEEEeCCch----
Q 039455 101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE--Q--LQALAGNHDWF-GFGS-RIIITTRDEH---- 170 (216)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~--~~~l~~~~~~~-~~~~-~il~tsr~~~---- 170 (216)
.. ..+ .++.+|+|||++... . ...+...+... ..+. .+|+||+...
T Consensus 98 -------------------~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 98 -------------------LL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp -------------------GG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred -------------------HH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 00 000 345699999996441 1 22222111100 1222 4777776432
Q ss_pred -----hhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 171 -----VLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 171 -----~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
+.+.+.....+++++++.++..+++...+...+ .+++.++.|+
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 203 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLL 203 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 111111227899999999999999988763222 3344444443
No 27
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.20 E-value=2.5e-10 Score=90.00 Aligned_cols=149 Identities=11% Similarity=0.084 Sum_probs=87.7
Q ss_pred ccccchhHHHHHHHHHhcC-------------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC----ceEeecccccc
Q 039455 27 GLVGIASRMEKMNGYLEAG-------------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE----ASSFLANVREV 89 (216)
Q Consensus 27 ~~vgR~~~~~~l~~~l~~~-------------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~----~~~~~~~~~~~ 89 (216)
.++|.+...+.+..++... ......++|+||+|+|||++|+.+++.+..... ....+. ....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 5899999999988765411 234568999999999999999999987643211 122222 1111
Q ss_pred ccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-----------HHHHHhhcCCCCCCC
Q 039455 90 SVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-----------EQLQALAGNHDWFGF 158 (216)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----------~~~~~l~~~~~~~~~ 158 (216)
. ..+... ........+... .+.+|+|||++.+ +....++..+.....
T Consensus 111 ~--~~~~g~-----------------~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~ 168 (309)
T 3syl_A 111 V--GQYIGH-----------------TAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRD 168 (309)
T ss_dssp C--CSSTTC-----------------HHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTT
T ss_pred h--hhcccc-----------------cHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCC
Confidence 0 000000 000111111111 2349999999733 333444433322234
Q ss_pred CcEEEEEeCCch----------hhhccCCcceEEecCCChHHHHHHHhhhhc
Q 039455 159 GSRIIITTRDEH----------VLKGHGVTNIYKVRGLDYVEALQLFHLKVS 200 (216)
Q Consensus 159 ~~~il~tsr~~~----------~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~ 200 (216)
+..+|+||.... +.++ ....+.+++++.++..+++...+.
T Consensus 169 ~~~~i~~~~~~~~~~~~~~~~~l~~R--~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 169 DLVVILAGYADRMENFFQSNPGFRSR--IAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp TCEEEEEECHHHHHHHHHHSTTHHHH--EEEEEEECCCCHHHHHHHHHHHHH
T ss_pred CEEEEEeCChHHHHHHHhhCHHHHHh--CCeEEEcCCcCHHHHHHHHHHHHH
Confidence 567788876432 2222 348899999999999999987764
No 28
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.19 E-value=5.3e-10 Score=90.63 Aligned_cols=168 Identities=14% Similarity=0.197 Sum_probs=99.1
Q ss_pred cccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccc
Q 039455 24 AVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT 92 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (216)
...+..|-++..++|.+.+.. +-...+-+.++||+|+|||.||+++++.....| +.+. .+.. .
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f---~~v~-~s~l--~ 219 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKF---IRVS-GAEL--V 219 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEE---EEEE-GGGG--S
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCc---eEEE-hHHh--h
Confidence 356788999999998775431 223357899999999999999999999875432 1121 1111 0
Q ss_pred cCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCC--
Q 039455 93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHD-- 154 (216)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~-- 154 (216)
..+..-.... ....+..+-...+++|+||++|.. ..+..++..+.
T Consensus 220 sk~vGese~~-----------------vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 282 (405)
T 4b4t_J 220 QKYIGEGSRM-----------------VRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGF 282 (405)
T ss_dssp CSSTTHHHHH-----------------HHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTT
T ss_pred ccccchHHHH-----------------HHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhcc
Confidence 1111111111 122233333467899999999743 01223332221
Q ss_pred CCCCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455 155 WFGFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK 214 (216)
Q Consensus 155 ~~~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~ 214 (216)
....+..+|.||..++.++. -..+..+.+++.+.++..++|+.+...-. ..+-++++|++
T Consensus 283 ~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~ 348 (405)
T 4b4t_J 283 ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAE 348 (405)
T ss_dssp TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHH
T ss_pred CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHH
Confidence 11234566777776543221 13578999999999999999987764433 22335666654
No 29
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.19 E-value=8.8e-10 Score=84.75 Aligned_cols=155 Identities=17% Similarity=0.172 Sum_probs=87.3
Q ss_pred cccccccchhHHHHHHHHHhc---C-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455 24 AVDGLVGIASRMEKMNGYLEA---G-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR 93 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~---~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (216)
.-..++|.+...+.+.+++.. . ......+.|+||+|+|||++|+.++......+ ..+. ..... .
T Consensus 4 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~--~ 77 (262)
T 2qz4_A 4 SFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFV--E 77 (262)
T ss_dssp CTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTS--S
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHH--h
Confidence 345689999998888776531 1 12346789999999999999999998764321 2222 11110 0
Q ss_pred CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-----------------HHHHHhhcCCCC-
Q 039455 94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-----------------EQLQALAGNHDW- 155 (216)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-----------------~~~~~l~~~~~~- 155 (216)
.+.... .......+.......+.+|+|||++.. ..+..++..+..
T Consensus 78 ~~~~~~-----------------~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 78 VIGGLG-----------------AARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp SSTTHH-----------------HHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred hccChh-----------------HHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 000000 011112233333345789999999764 112233322111
Q ss_pred -CCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcC
Q 039455 156 -FGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 156 -~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
...+..+|.||........ . .....+.+++.+.++..++++..+..
T Consensus 141 ~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 141 GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 1234566677765442211 1 23477889999999999999876643
No 30
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.18 E-value=2.4e-10 Score=90.86 Aligned_cols=168 Identities=17% Similarity=0.143 Sum_probs=90.6
Q ss_pred cccccc-cchhH--HHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHH
Q 039455 24 AVDGLV-GIASR--MEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQE 100 (216)
Q Consensus 24 ~~~~~v-gR~~~--~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (216)
.-+.|+ |.... ...+..++.........+.|+||+|+|||||++.+++.+......+.++. .. .+..
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~---------~~~~ 78 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-AD---------DFAQ 78 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HH---------HHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HH---------HHHH
Confidence 345565 54433 33455555544334578999999999999999999987754322333433 11 1122
Q ss_pred HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH---H-HHHhhcCCCC-CCCCcEEEEEeCCch-----
Q 039455 101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE---Q-LQALAGNHDW-FGFGSRIIITTRDEH----- 170 (216)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~---~-~~~l~~~~~~-~~~~~~il~tsr~~~----- 170 (216)
.+...+... ....+.... .++.+|+|||++... . ...+...+.. ...+..+|+|+....
T Consensus 79 ~~~~~~~~~----------~~~~~~~~~-~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 79 AMVEHLKKG----------TINEFRNMY-KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHHT----------CHHHHHHHH-HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT
T ss_pred HHHHHHHcC----------cHHHHHHHh-cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHH
Confidence 222222110 011122222 135699999996542 1 1222211110 023566777776432
Q ss_pred ----hhhccCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 171 ----VLKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 171 ----~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
+.+.+.....++++| +.++..+++...+...+ .+++.++.|+
T Consensus 148 l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~ 195 (324)
T 1l8q_A 148 VSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLL 195 (324)
T ss_dssp SCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred hhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 122222336799999 99999999988764322 3444555444
No 31
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.18 E-value=4.7e-09 Score=82.67 Aligned_cols=157 Identities=14% Similarity=0.153 Sum_probs=94.3
Q ss_pred CcccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455 23 SAVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV 91 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
.....++|.+..++.|..++.. +-.....+.|+||+|+|||+||+.++...... .+.+. .
T Consensus 12 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~---~i~v~-~----- 82 (301)
T 3cf0_A 12 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN---FISIK-G----- 82 (301)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCE---EEEEC-H-----
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCC---EEEEE-h-----
Confidence 3456799999999998887642 12345789999999999999999999876421 12221 1
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHH----------------HHHhhcCCCC
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ----------------LQALAGNHDW 155 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~----------------~~~l~~~~~~ 155 (216)
..+.....+.. .......+.......+.+|+||+++.+.. ...++..+..
T Consensus 83 --------~~l~~~~~g~~------~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 83 --------PELLTMWFGES------EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp --------HHHHHHHHTTC------TTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred --------HHHHhhhcCch------HHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 11222211111 11122334444445689999999975321 2222222110
Q ss_pred --CCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCC
Q 039455 156 --FGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKG 202 (216)
Q Consensus 156 --~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~ 202 (216)
...+..||.||..+..... . .....+.+++.+.++..++++......
T Consensus 149 ~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~ 202 (301)
T 3cf0_A 149 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 202 (301)
T ss_dssp SCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS
T ss_pred ccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC
Confidence 1234667777776543221 1 245689999999999999998776443
No 32
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.16 E-value=4.1e-10 Score=90.97 Aligned_cols=52 Identities=25% Similarity=0.309 Sum_probs=40.4
Q ss_pred ccccccchhHHHHHH---HHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 25 VDGLVGIASRMEKMN---GYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~---~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
...|+|++...+.+. ..+..+...+..+.|+||+|+|||++|+.++..+...
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~ 97 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPD 97 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 557999999977754 4444443334689999999999999999999987644
No 33
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.15 E-value=1.2e-09 Score=89.73 Aligned_cols=168 Identities=19% Similarity=0.261 Sum_probs=98.1
Q ss_pred cccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccc
Q 039455 24 AVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT 92 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (216)
......|-++..++|...+.. +-.-.+-+.++||+|+|||+||+++++.....| +.+. .+.. .
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~---~~v~-~s~l--~ 252 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF---IFSP-ASGI--V 252 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGT--C
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE---EEEe-hhhh--c
Confidence 356788999999988776542 123357899999999999999999999875332 1121 1111 0
Q ss_pred cCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCC--
Q 039455 93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHD-- 154 (216)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~-- 154 (216)
..+..-.... ....+...-...+++|+||+++.. ..+..++..+.
T Consensus 253 sk~~Gese~~-----------------ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 253 DKYIGESARI-----------------IREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp CSSSSHHHHH-----------------HHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred cccchHHHHH-----------------HHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 0111111111 122233333467899999999643 01223332221
Q ss_pred CCCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455 155 WFGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK 214 (216)
Q Consensus 155 ~~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~ 214 (216)
....+..||.||..++.+.. + ..+..+.++..+.++..++|+.+...-. .++-++..|++
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~ 381 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVK 381 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHH
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHH
Confidence 11234567777776544322 1 1467899999999999999987764433 23334555553
No 34
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.14 E-value=7.1e-10 Score=90.44 Aligned_cols=169 Identities=14% Similarity=0.048 Sum_probs=92.9
Q ss_pred CCcccccccchhHHHHHHHHHhcC----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAG----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV 91 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
+.....++|.+..++.|..++... ......++|+|++|+|||+||+.++...... .+.+. +....
T Consensus 111 ~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~---~~~v~-~~~l~- 185 (389)
T 3vfd_A 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNAT---FFNIS-AASLT- 185 (389)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCE---EEEEC-SCCC--
T ss_pred CCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCc---EEEee-HHHhh-
Confidence 344567999999999998876311 1234789999999999999999998875322 12222 11110
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCC---CC
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNH---DW 155 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~---~~ 155 (216)
. .... .........+......++.+|+|||++.+ .....++..+ ..
T Consensus 186 --~------~~~g----------~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 247 (389)
T 3vfd_A 186 --S------KYVG----------EGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS 247 (389)
T ss_dssp ------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-
T ss_pred --c------cccc----------hHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc
Confidence 0 0000 00011111222222345679999999654 1111222111 10
Q ss_pred -CCCCcEEEEEeCCchhhhc---cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 156 -FGFGSRIIITTRDEHVLKG---HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 156 -~~~~~~il~tsr~~~~~~~---~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
......||.||.....+.. ......+.+.+.+.++..+++...+...+ ..++.+..|+
T Consensus 248 ~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la 311 (389)
T 3vfd_A 248 AGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLA 311 (389)
T ss_dssp ----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHH
T ss_pred cCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 1223456666765432111 12446789999999999999987764433 3344555554
No 35
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.14 E-value=5.8e-10 Score=89.87 Aligned_cols=170 Identities=16% Similarity=0.125 Sum_probs=96.4
Q ss_pred CCcccccccchhHHHHHHHHHhc----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEA----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV 91 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
+.....++|.+..++.|...+.. .......++|+||+|+|||+||+.++..+...| +.+. ...
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~---~~v~-~~~--- 119 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTF---FSVS-SSD--- 119 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEE---EEEE-HHH---
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCE---EEee-HHH---
Confidence 34456799999999999887631 112235799999999999999999999874221 1111 111
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH-------------HHHHhhcC---CCC
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE-------------QLQALAGN---HDW 155 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~-------------~~~~l~~~---~~~ 155 (216)
+.. .. ...........+......++.+|+|||++.+. ....++.. +..
T Consensus 120 ----------l~~----~~--~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~ 183 (355)
T 2qp9_X 120 ----------LVS----KW--MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 183 (355)
T ss_dssp ----------HHS----CC-----CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-
T ss_pred ----------Hhh----hh--cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc
Confidence 000 00 00001111122222333578899999997541 12222221 111
Q ss_pred CCCCcEEEEEeCCchhhhc---cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 156 FGFGSRIIITTRDEHVLKG---HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 156 ~~~~~~il~tsr~~~~~~~---~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
...+..+|.||..+..... ......+.+++.+.++..++|..+..... .++..++.|++
T Consensus 184 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~ 247 (355)
T 2qp9_X 184 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGA 247 (355)
T ss_dssp --CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHH
T ss_pred cCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Confidence 1234556667765432111 13567889999999999999998775443 23445665553
No 36
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.14 E-value=1.8e-09 Score=89.50 Aligned_cols=172 Identities=17% Similarity=0.135 Sum_probs=99.8
Q ss_pred CCCcccccccchhHHHHHHHHHhc----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc
Q 039455 21 FPSAVDGLVGIASRMEKMNGYLEA----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS 90 (216)
Q Consensus 21 ~~~~~~~~vgR~~~~~~l~~~l~~----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (216)
++.....++|.+...+.|...+.. .......++|+||+|+|||+||+.++..+... ..+.+. ...
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~--~~~~v~-~~~-- 203 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNS--TFFSIS-SSD-- 203 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSS--EEEEEC-CC---
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCC--CEEEEe-HHH--
Confidence 344567899999999999887631 11234689999999999999999999876211 112221 111
Q ss_pred cccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCCCCC-
Q 039455 91 VTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNHDWF- 156 (216)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~~~- 156 (216)
+.... .+. ........+......++.+|+|||++.+ .....++..+...
T Consensus 204 -------l~~~~----~g~------~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 266 (444)
T 2zan_A 204 -------LVSKW----LGE------SEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 266 (444)
T ss_dssp -------------------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS
T ss_pred -------HHhhh----cch------HHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc
Confidence 00000 000 0111122222233356789999999755 2234455444321
Q ss_pred --CCCcEEEEEeCCchhhhc---cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhcc
Q 039455 157 --GFGSRIIITTRDEHVLKG---HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELSK 214 (216)
Q Consensus 157 --~~~~~il~tsr~~~~~~~---~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~~ 214 (216)
..+..||.||..+..... ......+.+++.+.++..++|..+..... .++..+..|++
T Consensus 267 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~ 331 (444)
T 2zan_A 267 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGR 331 (444)
T ss_dssp CCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHH
T ss_pred cCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 345666777765532211 13456888999999999999988775443 24455665553
No 37
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=5.8e-10 Score=94.18 Aligned_cols=174 Identities=18% Similarity=0.164 Sum_probs=96.2
Q ss_pred CCcccccccchhHHHHHHHHHhcC---------------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccc
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAG---------------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANV 86 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~---------------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~ 86 (216)
|....+++|++..++.+..++... .+..+.++|+||+|+|||++|+.++..+. ++ ++.+. .
T Consensus 35 P~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in-~ 110 (516)
T 1sxj_A 35 PTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN-A 110 (516)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC-T
T ss_pred CCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe-C
Confidence 345577999999999999988641 01346999999999999999999998772 22 22222 1
Q ss_pred cccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHH--HhCCceEEEEEeCCCCH--------HHHHHhhcCCCCC
Q 039455 87 REVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW--RLCRKRVLVVLDDVDQL--------EQLQALAGNHDWF 156 (216)
Q Consensus 87 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~--~l~~~~~llvlDd~~~~--------~~~~~l~~~~~~~ 156 (216)
.. .... ......+..... ............. ....++.+|+|||++.. ..+..++..
T Consensus 111 s~---~~~~-~~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~---- 177 (516)
T 1sxj_A 111 SD---VRSK-TLLNAGVKNALD-----NMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK---- 177 (516)
T ss_dssp TS---CCCH-HHHHHTGGGGTT-----BCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH----
T ss_pred CC---cchH-HHHHHHHHHHhc-----cccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh----
Confidence 11 1111 111111110000 0000000000000 11246789999999643 233333322
Q ss_pred CCCcEEEEEeCCch---hhhccCCcceEEecCCChHHHHHHHhhhhcCC--CCCchhHhhhc
Q 039455 157 GFGSRIIITTRDEH---VLKGHGVTNIYKVRGLDYVEALQLFHLKVSKG--KQPTDDRVELS 213 (216)
Q Consensus 157 ~~~~~il~tsr~~~---~~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~--~~~~~~~~~l~ 213 (216)
.+..+|+++.+.. +.........+.+++++.++..+++...+... ..+++.+..|+
T Consensus 178 -~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la 238 (516)
T 1sxj_A 178 -TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLI 238 (516)
T ss_dssp -CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHH
T ss_pred -cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 2344666665432 22222334689999999999999998765332 23445555554
No 38
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.12 E-value=2e-09 Score=89.88 Aligned_cols=149 Identities=12% Similarity=0.074 Sum_probs=85.6
Q ss_pred cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-C----ceEeec-cccccccccCchH
Q 039455 24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-E----ASSFLA-NVREVSVTRGLVP 97 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-~----~~~~~~-~~~~~~~~~~~~~ 97 (216)
..++++||+.+++.+...+... ....++|+|++|+|||++++.++..+.... + ...++. ++.
T Consensus 178 ~ld~iiGr~~~i~~l~~~l~r~--~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---------- 245 (468)
T 3pxg_A 178 SLDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---------- 245 (468)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------
T ss_pred CCCCccCcHHHHHHHHHHHhcc--CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------
Confidence 3457999999999999988753 235678999999999999999999864321 1 111111 010
Q ss_pred HHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc---
Q 039455 98 LQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG--- 174 (216)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~--- 174 (216)
....+ . ........+...-..++.+|++| ...+....+...+. .....+|.+|...++...
T Consensus 246 ------~~~~g----~--~e~~~~~~~~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~ 309 (468)
T 3pxg_A 246 ------TKYRG----E--FEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (468)
T ss_dssp -------------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ------ccccc----h--HHHHHHHHHHHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhc
Confidence 00000 0 00112222333334567899999 22233333444333 334666766665542110
Q ss_pred ----cCCcceEEecCCChHHHHHHHhhhhc
Q 039455 175 ----HGVTNIYKVRGLDYVEALQLFHLKVS 200 (216)
Q Consensus 175 ----~~~~~~~~l~~l~~~~~~~ll~~~~~ 200 (216)
...+..+.+++++.++..++|.....
T Consensus 310 ~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~ 339 (468)
T 3pxg_A 310 DAALERRFQPIQVDQPSVDESIQILQGLRD 339 (468)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTTT
T ss_pred CHHHHHhCccceeCCCCHHHHHHHHHHHHH
Confidence 11345799999999999999986553
No 39
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.12 E-value=1.8e-09 Score=88.81 Aligned_cols=167 Identities=17% Similarity=0.185 Sum_probs=96.7
Q ss_pred ccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455 25 VDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR 93 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (216)
-....|-++..++|.+.+.. +-.-.+-|+++||+|+|||+||+++++.....| +.+. ...+ ..
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~f---i~vs-~s~L--~s 281 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATF---IRVI-GSEL--VQ 281 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGG--CC
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCe---EEEE-hHHh--hc
Confidence 45788999999988775431 223467899999999999999999999875432 1111 1111 00
Q ss_pred CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCC--C
Q 039455 94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHD--W 155 (216)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~--~ 155 (216)
.+..-... .....+...-...+++|+||+++.. ..+..++..+. .
T Consensus 282 k~vGesek-----------------~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 282 KYVGEGAR-----------------MVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp CSSSHHHH-----------------HHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred ccCCHHHH-----------------HHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 11111111 1122233334467899999998643 01222222211 1
Q ss_pred CCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455 156 FGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK 214 (216)
Q Consensus 156 ~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~ 214 (216)
...+..+|.||..+..+.. + ..+..+.++..+.++..++|+.+...-. ..+-+++.|++
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~ 409 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISR 409 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHH
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 1234456667765543221 1 3578899999999999999987764433 22234555553
No 40
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.11 E-value=9.5e-10 Score=90.26 Aligned_cols=171 Identities=15% Similarity=0.182 Sum_probs=97.6
Q ss_pred CCCcccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccc
Q 039455 21 FPSAVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREV 89 (216)
Q Consensus 21 ~~~~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~ 89 (216)
+......+.|-++..++|...+.. +-...+.|.++||+|+|||.||+++++.....| +.+. .+.+
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f---~~v~-~s~l 251 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF---LKLA-APQL 251 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE---EEEE-GGGG
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE---EEEe-hhhh
Confidence 334567889999999998775321 123457899999999999999999999875432 1111 1111
Q ss_pred ccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH------------H----HHHHhhcCC
Q 039455 90 SVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------------E----QLQALAGNH 153 (216)
Q Consensus 90 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------------~----~~~~l~~~~ 153 (216)
...+..-....++ ..+...-...+++|+||+++.. . .+..++..+
T Consensus 252 --~~~~vGese~~ir-----------------~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~l 312 (434)
T 4b4t_M 252 --VQMYIGEGAKLVR-----------------DAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQL 312 (434)
T ss_dssp --CSSCSSHHHHHHH-----------------HHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHH
T ss_pred --hhcccchHHHHHH-----------------HHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHh
Confidence 0111111111111 1222223346899999998533 0 122333222
Q ss_pred CCC--CCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455 154 DWF--GFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK 214 (216)
Q Consensus 154 ~~~--~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~ 214 (216)
... ..+..||.||..++.+.. + ..+..+.++..+.++..++|+.+...-. .++-++++|++
T Consensus 313 dg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~ 381 (434)
T 4b4t_M 313 DGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELAR 381 (434)
T ss_dssp TTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHH
T ss_pred hccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHH
Confidence 111 234556667776544322 1 2467899999999999999986653332 22234555553
No 41
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.10 E-value=1.1e-09 Score=90.67 Aligned_cols=149 Identities=19% Similarity=0.263 Sum_probs=87.3
Q ss_pred CCcccccccchhHH---HHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455 22 PSAVDGLVGIASRM---EKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 22 ~~~~~~~vgR~~~~---~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (216)
|..-.+++|.+..+ +.|...+..+. ...++|+||+|+||||||+.+++.....|. . +.... ... ..
T Consensus 22 P~~l~~ivGq~~~~~~~~~L~~~i~~~~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~--~-l~a~~-----~~~-~~ 90 (447)
T 3pvs_A 22 PENLAQYIGQQHLLAAGKPLPRAIEAGH--LHSMILWGPPGTGKTTLAEVIARYANADVE--R-ISAVT-----SGV-KE 90 (447)
T ss_dssp CCSTTTCCSCHHHHSTTSHHHHHHHHTC--CCEEEEECSTTSSHHHHHHHHHHHTTCEEE--E-EETTT-----CCH-HH
T ss_pred CCCHHHhCCcHHHHhchHHHHHHHHcCC--CcEEEEECCCCCcHHHHHHHHHHHhCCCeE--E-EEecc-----CCH-HH
Confidence 34556799999998 77888777642 378999999999999999999987643321 1 11000 111 11
Q ss_pred HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH--HHHHhhcCCCCCCCCcEEEEEe-CCchh--hh
Q 039455 99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE--QLQALAGNHDWFGFGSRIIITT-RDEHV--LK 173 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~~~~~~il~ts-r~~~~--~~ 173 (216)
...++.. ........++.+|+|||++... ....++..+. .....+|.+| .+... ..
T Consensus 91 ir~~~~~-----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le--~~~v~lI~att~n~~~~l~~ 151 (447)
T 3pvs_A 91 IREAIER-----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIE--DGTITFIGATTENPSFELNS 151 (447)
T ss_dssp HHHHHHH-----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHH--TTSCEEEEEESSCGGGSSCH
T ss_pred HHHHHHH-----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHh--cCceEEEecCCCCcccccCH
Confidence 1111111 0011124567899999997652 2233333222 1234455544 33321 11
Q ss_pred -ccCCcceEEecCCChHHHHHHHhhhhc
Q 039455 174 -GHGVTNIYKVRGLDYVEALQLFHLKVS 200 (216)
Q Consensus 174 -~~~~~~~~~l~~l~~~~~~~ll~~~~~ 200 (216)
.......+.+++++.++..+++.+...
T Consensus 152 aL~sR~~v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 152 ALLSRARVYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp HHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHhCceeEEeeCCcCHHHHHHHHHHHHH
Confidence 122346899999999999999987764
No 42
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.10 E-value=6.7e-10 Score=88.09 Aligned_cols=161 Identities=17% Similarity=0.157 Sum_probs=92.4
Q ss_pred CCcccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (216)
|.....|+|++..++.+..++... ......+.|+|++|+|||++|+.+++..... ..++. .... ..
T Consensus 8 p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~---~~~~~-~~~~---~~---- 76 (324)
T 1hqc_A 8 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN---LRVTS-GPAI---EK---- 76 (324)
T ss_dssp CCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCC---EEEEC-TTTC---CS----
T ss_pred cccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe-cccc---CC----
Confidence 345577999999999998877521 2234689999999999999999999876422 22332 1110 00
Q ss_pred HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH--HHHHhhcCCCCC------------------CC
Q 039455 99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE--QLQALAGNHDWF------------------GF 158 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~--~~~~l~~~~~~~------------------~~ 158 (216)
...+... +... ..++.+|+|||++... ....+...+... ..
T Consensus 77 ~~~l~~~------------------l~~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~ 137 (324)
T 1hqc_A 77 PGDLAAI------------------LANS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELP 137 (324)
T ss_dssp HHHHHHH------------------HTTT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECC
T ss_pred hHHHHHH------------------HHHh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCC
Confidence 1111111 1110 1245699999997642 222222111000 02
Q ss_pred CcEEEEEeCCch-hhhcc--CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhh
Q 039455 159 GSRIIITTRDEH-VLKGH--GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVEL 212 (216)
Q Consensus 159 ~~~il~tsr~~~-~~~~~--~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l 212 (216)
...++.+|.... +...+ .....+.+.+++.++..+++...+...+ .+++.++.|
T Consensus 138 ~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l 196 (324)
T 1hqc_A 138 RFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEI 196 (324)
T ss_dssp CCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHH
T ss_pred CEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 355666666442 21111 1346899999999999999988764333 333444444
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.10 E-value=1.5e-09 Score=84.09 Aligned_cols=152 Identities=17% Similarity=0.155 Sum_probs=84.8
Q ss_pred ccccccchhHHHHHHHH-------Hhc-CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCch
Q 039455 25 VDGLVGIASRMEKMNGY-------LEA-GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLV 96 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~-------l~~-~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (216)
...++|.+..++.+... +.. .......+.|+||+|+|||+||+.++.... .+.+.+.. ... .....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~--~~~~~i~~-~~~---~~g~~ 105 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN--FPFIKICS-PDK---MIGFS 105 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT--CSEEEEEC-GGG---CTTCC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC--CCEEEEeC-HHH---hcCCc
Confidence 34688998887776652 221 234568999999999999999999998753 23222211 110 00000
Q ss_pred HHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH---------------HHHHHhhcCCCCCCCCcE
Q 039455 97 PLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL---------------EQLQALAGNHDWFGFGSR 161 (216)
Q Consensus 97 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~---------------~~~~~l~~~~~~~~~~~~ 161 (216)
. .. ........+......++.+|+|||++.+ +.+..++...........
T Consensus 106 ~--~~--------------~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 106 E--TA--------------KCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp H--HH--------------HHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred h--HH--------------HHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 0 00 0011122233334466889999998643 222233322221123345
Q ss_pred EEEEeCCchhhhc---cC-CcceEEecCCCh-HHHHHHHhhh
Q 039455 162 IIITTRDEHVLKG---HG-VTNIYKVRGLDY-VEALQLFHLK 198 (216)
Q Consensus 162 il~tsr~~~~~~~---~~-~~~~~~l~~l~~-~~~~~ll~~~ 198 (216)
||.||..+..... .. ....+.+++++. ++...++...
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~ 211 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL 211 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhc
Confidence 6777776644332 11 256789999988 6666666653
No 44
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.09 E-value=8.5e-10 Score=80.14 Aligned_cols=50 Identities=18% Similarity=0.231 Sum_probs=41.9
Q ss_pred cccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 24 AVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
....++||+.+++.+...+... ....+.|+|++|+|||+|++.++..+..
T Consensus 20 ~~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 20 KLDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp CSCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ccchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456999999999999988753 3467899999999999999999987644
No 45
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.08 E-value=1.4e-09 Score=85.24 Aligned_cols=169 Identities=14% Similarity=0.061 Sum_probs=92.5
Q ss_pred CCcccccccchhHHHHHHHHHhcC----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAG----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV 91 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
+..-..++|.+..++.+...+... ......+.|+||+|+|||++|+.++......| ..+. ......
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~-~~~l~~ 92 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATF---LNIS-AASLTS 92 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEE-STTTSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEee-HHHHhh
Confidence 445678999999999998876421 12346899999999999999999998764221 1222 111100
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhh---cCCCC
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALA---GNHDW 155 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~---~~~~~ 155 (216)
.. .. .........+......++.+|+|||++.. .....++ ..+..
T Consensus 93 ~~-~~------------------~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 153 (297)
T 3b9p_A 93 KY-VG------------------DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG 153 (297)
T ss_dssp SS-CS------------------CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-
T ss_pred cc-cc------------------hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc
Confidence 00 00 00011111222233356789999999643 1111222 11111
Q ss_pred C--CCCcEEEEEeCCchhhhc---cCCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 156 F--GFGSRIIITTRDEHVLKG---HGVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 156 ~--~~~~~il~tsr~~~~~~~---~~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
. +.+..+|.||..+..... ......+.+++.+.++..+++.......+ .+++.++.|+
T Consensus 154 ~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la 218 (297)
T 3b9p_A 154 NPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLA 218 (297)
T ss_dssp -----CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHH
T ss_pred cCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 1 134556777776432111 02456788888899888888877653322 2334455444
No 46
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.08 E-value=1.3e-09 Score=86.55 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=85.0
Q ss_pred CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL 102 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (216)
..-++++|++..++.+..++..+ .....+.++||+|+|||++++.+++.+.. .+..+. ... .. .......
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~-~~~~~~L~~G~~G~GKT~la~~la~~l~~---~~~~i~-~~~----~~-~~~i~~~ 92 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKG-KIPHIILHSPSPGTGKTTVAKALCHDVNA---DMMFVN-GSD----CK-IDFVRGP 92 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTT-CCCSEEEECSSTTSSHHHHHHHHHHHTTE---EEEEEE-TTT----CC-HHHHHTH
T ss_pred CCHHHHhCcHHHHHHHHHHHHcC-CCCeEEEeeCcCCCCHHHHHHHHHHHhCC---CEEEEc-ccc----cC-HHHHHHH
Confidence 44567999999999999998854 23467888899999999999999987631 222222 111 11 1111111
Q ss_pred HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH---HHHHhhcCCCCCCCCcEEEEEeCCchh-hhcc-CC
Q 039455 103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE---QLQALAGNHDWFGFGSRIIITTRDEHV-LKGH-GV 177 (216)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~---~~~~l~~~~~~~~~~~~il~tsr~~~~-~~~~-~~ 177 (216)
+....... ...+++.+|+|||++... ....+...+.....++.+|+||....- ...+ ..
T Consensus 93 ~~~~~~~~----------------~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 93 LTNFASAA----------------SFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp HHHHHHBC----------------CCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHHHhhc----------------ccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 11111000 012367899999998764 233333222211245678888876532 1111 12
Q ss_pred cceEEecCCChHHHHH
Q 039455 178 TNIYKVRGLDYVEALQ 193 (216)
Q Consensus 178 ~~~~~l~~l~~~~~~~ 193 (216)
...+++++++.++..+
T Consensus 157 ~~~i~~~~~~~~e~~~ 172 (324)
T 3u61_B 157 CRVITFGQPTDEDKIE 172 (324)
T ss_dssp SEEEECCCCCHHHHHH
T ss_pred CcEEEeCCCCHHHHHH
Confidence 3579999999887433
No 47
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.08 E-value=3.1e-10 Score=79.79 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=37.8
Q ss_pred ccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 27 GLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 27 ~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.++|++..++.+.+.+..-......+.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999998776433344678999999999999999998754
No 48
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.08 E-value=2.7e-09 Score=86.93 Aligned_cols=169 Identities=17% Similarity=0.195 Sum_probs=97.7
Q ss_pred CcccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455 23 SAVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV 91 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
.....+-|-++..++|.+.+.. +-.-.+-|.++||+|+|||.||+++++.....|- .+. .+.+
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi---~v~-~s~l-- 252 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFL---RIV-GSEL-- 252 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEE---EEE-SGGG--
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEE---EEE-HHHh--
Confidence 3456788999999988775531 1233578999999999999999999998754321 111 1111
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCC-
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHD- 154 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~- 154 (216)
...+..-....+ ...+..+-...+++|+||+++.. ..+..++..+.
T Consensus 253 ~sk~vGesek~i-----------------r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 253 IQKYLGDGPRLC-----------------RQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDG 315 (437)
T ss_dssp CCSSSSHHHHHH-----------------HHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHH-----------------HHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhC
Confidence 011111111111 12223333457899999988633 11222322211
Q ss_pred -CCCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455 155 -WFGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK 214 (216)
Q Consensus 155 -~~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~ 214 (216)
....+..+|.||..++.++. + ..+..+.++..+.++..++|+.+...-. ..+-+++.|++
T Consensus 316 ~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~ 382 (437)
T 4b4t_I 316 FDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVT 382 (437)
T ss_dssp CCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHH
T ss_pred cCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHH
Confidence 11234566777776654332 1 2456789999999999999987765443 22334666654
No 49
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.08 E-value=7.9e-10 Score=92.51 Aligned_cols=166 Identities=14% Similarity=0.095 Sum_probs=95.2
Q ss_pred ccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455 25 VDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR 93 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (216)
...++|.+..++.|..++... ......++|+|++|+|||++|+.+++..... .+.+. +.... .
T Consensus 203 ~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~---fv~vn-~~~l~--~ 276 (489)
T 3hu3_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLIN-GPEIM--S 276 (489)
T ss_dssp GGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSE---EEEEE-HHHHH--T
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCC---EEEEE-chHhh--h
Confidence 456899999999998876532 2345679999999999999999998876321 12222 11110 0
Q ss_pred CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCCC--CCCC
Q 039455 94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNHD--WFGF 158 (216)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~--~~~~ 158 (216)
.+. ..........+.....+++.+|+|||++.+ .....++..+. ....
T Consensus 277 ~~~-----------------g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~ 339 (489)
T 3hu3_A 277 KLA-----------------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (489)
T ss_dssp SCT-----------------THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS
T ss_pred hhc-----------------chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC
Confidence 000 001111223344444566789999998422 11122222111 1123
Q ss_pred CcEEEEEeCCchh-----hhccCCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhc
Q 039455 159 GSRIIITTRDEHV-----LKGHGVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELS 213 (216)
Q Consensus 159 ~~~il~tsr~~~~-----~~~~~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~ 213 (216)
+..+|.||+.+.. .+.......+.+.+.+.++..++|+.+..... ..+..+.+++
T Consensus 340 ~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la 400 (489)
T 3hu3_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVA 400 (489)
T ss_dssp CEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHH
T ss_pred ceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHH
Confidence 4556667765532 11112456799999999999999998764433 2222344444
No 50
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=1.4e-09 Score=87.15 Aligned_cols=180 Identities=13% Similarity=0.171 Sum_probs=96.5
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC--CC-ceEeeccccccccccCchHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--FE-ASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~ 98 (216)
|.....++|++..++.+..++..+. .+.+.|+||+|+||||+++.++..+... +. ....+. ... .... ..
T Consensus 33 p~~~~~i~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~-~~~---~~~~-~~ 105 (353)
T 1sxj_D 33 PKNLDEVTAQDHAVTVLKKTLKSAN--LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN-ASD---ERGI-SI 105 (353)
T ss_dssp CSSTTTCCSCCTTHHHHHHHTTCTT--CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC-SSS---CCCH-HH
T ss_pred CCCHHHhhCCHHHHHHHHHHHhcCC--CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc-ccc---ccch-HH
Confidence 3445679999999999999887542 2348999999999999999999875321 11 122222 111 0111 11
Q ss_pred HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hhhcc
Q 039455 99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VLKGH 175 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~~ 175 (216)
.......+........ ... .....-..+..+|++|+++.. +....+...+........+++++.... +...+
T Consensus 106 ~~~~~~~~~~~~~~~~---~~~--~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l 180 (353)
T 1sxj_D 106 VREKVKNFARLTVSKP---SKH--DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPL 180 (353)
T ss_dssp HTTHHHHHHHSCCCCC---CTT--HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHhhhccccc---chh--hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchh
Confidence 1111111111100000 000 000111234579999999754 222333322221134566777775442 21111
Q ss_pred -CCcceEEecCCChHHHHHHHhhhhcCCC--CCchhHhhhc
Q 039455 176 -GVTNIYKVRGLDYVEALQLFHLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 176 -~~~~~~~l~~l~~~~~~~ll~~~~~~~~--~~~~~~~~l~ 213 (216)
.....+.++|++.++..+++...+...+ .+++.++.|+
T Consensus 181 ~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~ 221 (353)
T 1sxj_D 181 ASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERIL 221 (353)
T ss_dssp HHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHH
T ss_pred hccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 1235899999999999999988664333 3444555444
No 51
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.07 E-value=9.2e-10 Score=87.94 Aligned_cols=149 Identities=18% Similarity=0.209 Sum_probs=88.3
Q ss_pred CCcccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (216)
|.....++|++..++.+..++... ......+.|+|++|+|||+||+.+++.....| + .+. .... ...
T Consensus 25 p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~--~-~~~-~~~~---~~~--- 94 (338)
T 3pfi_A 25 PSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANI--K-TTA-APMI---EKS--- 94 (338)
T ss_dssp CCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCE--E-EEE-GGGC---CSH---
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCe--E-Eec-chhc---cch---
Confidence 445678999999999999887642 33456799999999999999999988764332 1 111 1110 000
Q ss_pred HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhh---cCCC---------------CCCC
Q 039455 99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALA---GNHD---------------WFGF 158 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~---~~~~---------------~~~~ 158 (216)
..+ ...+.. ..+..+|+|||++.. +....++ .... ...+
T Consensus 95 -~~~------------------~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 95 -GDL------------------AAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp -HHH------------------HHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred -hHH------------------HHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 000 011111 234569999999744 2222222 1110 0011
Q ss_pred CcEEEEEeCCchhhh-c-c-CCcceEEecCCChHHHHHHHhhhhcC
Q 039455 159 GSRIIITTRDEHVLK-G-H-GVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 159 ~~~il~tsr~~~~~~-~-~-~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
+..+|.+|....... . . .....+.+++++.++..+++...+..
T Consensus 154 ~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~ 199 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALK 199 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh
Confidence 355666666533211 1 1 23578999999999999999877643
No 52
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.03 E-value=4.2e-09 Score=86.40 Aligned_cols=168 Identities=21% Similarity=0.222 Sum_probs=92.4
Q ss_pred cccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccc
Q 039455 24 AVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT 92 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (216)
...+..|-++..++|...+.. +-...+.+.++||+|+|||+||+++++.....| +.+. .... .
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~---~~v~-~~~l--~ 243 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF---IRVN-GSEF--V 243 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE---EEEE-GGGT--C
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe---EEEe-cchh--h
Confidence 356788999999988776531 223456899999999999999999999875332 1111 1110 0
Q ss_pred cCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCC--
Q 039455 93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHD-- 154 (216)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~-- 154 (216)
..+..-... .....+..+-...++++++|+++.. ..+..++..+.
T Consensus 244 ~~~~Ge~e~-----------------~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 244 HKYLGEGPR-----------------MVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp CSSCSHHHH-----------------HHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred ccccchhHH-----------------HHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 011001111 1122233333467899999988532 01223332211
Q ss_pred CCCCCcEEEEEeCCchhhhc--c---CCcceEEecCC-ChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455 155 WFGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGL-DYVEALQLFHLKVSKGK-QPTDDRVELSK 214 (216)
Q Consensus 155 ~~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l-~~~~~~~ll~~~~~~~~-~~~~~~~~l~~ 214 (216)
....+..+|.||..++.+.. + ..+..++++.+ +.++..++|+.+...-. .++-+++.|++
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~ 373 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLII 373 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHH
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHH
Confidence 11234566777775543221 1 23567888655 55666677776654433 23334566553
No 53
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.03 E-value=5.5e-10 Score=86.35 Aligned_cols=157 Identities=15% Similarity=0.177 Sum_probs=87.8
Q ss_pred CCcccccccchhHHHHHHHHHhc----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEA----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV 91 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
+.....++|.+..++.+...+.. .......+.|+||+|+|||+||+.++......+-. +. ......
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~~~ 82 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS---MG-GSSFIE 82 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC---CC-SCTTTT
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEE---ec-hHHHHH
Confidence 34456799999999988876541 11223458899999999999999999876533211 11 111000
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHH-----------------HHHhhcCCC
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ-----------------LQALAGNHD 154 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~-----------------~~~l~~~~~ 154 (216)
. + . .. ..... ...+......++.+|+|||++.... +..++..+.
T Consensus 83 ~--~-----------~-~~--~~~~~---~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 143 (268)
T 2r62_A 83 M--F-----------V-GL--GASRV---RDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMD 143 (268)
T ss_dssp S--C-----------S-SS--CSSSS---STTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTT
T ss_pred h--h-----------c-ch--HHHHH---HHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhh
Confidence 0 0 0 00 00011 1112222234567999999965421 222332222
Q ss_pred CC---CCCcEEEEEeCCchhhh--cc---CCcceEEecCCChHHHHHHHhhhhcC
Q 039455 155 WF---GFGSRIIITTRDEHVLK--GH---GVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 155 ~~---~~~~~il~tsr~~~~~~--~~---~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
.. .....+|.||..+.... .. .....+.+++.+.++..++++.....
T Consensus 144 ~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 144 GFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp CSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred CcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 11 12245666776554221 11 23467889999999999999877643
No 54
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.02 E-value=1.4e-09 Score=97.00 Aligned_cols=151 Identities=13% Similarity=0.063 Sum_probs=82.6
Q ss_pred ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC------C-ceEeeccccccccccCchH
Q 039455 25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF------E-ASSFLANVREVSVTRGLVP 97 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~ 97 (216)
.++++||+++++.+...+.... ...++|+|++|+|||++++.+++.+.... . .+.++. +...
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~-~~~l-------- 237 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQ-MGSL-------- 237 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEEC-C-----------
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEee-hHHh--------
Confidence 4568999999999999887532 35678999999999999999999764311 1 122222 1110
Q ss_pred HHHHHHHHHHhhccccccchhhh-HHHHHHHhC-CceEEEEEeCCCCHH---------HHH-HhhcCCCCCCCCcEEEEE
Q 039455 98 LQEQLLSEVLMERNLIIWDVHKG-INLIRWRLC-RKRVLVVLDDVDQLE---------QLQ-ALAGNHDWFGFGSRIIIT 165 (216)
Q Consensus 98 ~~~~l~~~~~~~~~~~~~~~~~~-~~~l~~~l~-~~~~llvlDd~~~~~---------~~~-~l~~~~~~~~~~~~il~t 165 (216)
.. .... ..+.... ...+..... +++.+|+|||++... +.. .+...+. ..+..+|.+
T Consensus 238 -~~--------g~~~-~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~a 305 (854)
T 1qvr_A 238 -LA--------GAKY-RGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGA 305 (854)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEE
T ss_pred -hc--------cCcc-chHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEe
Confidence 00 0000 0011111 222222333 367899999997542 111 1111111 233556666
Q ss_pred eCCchhh------hccCCcceEEecCCChHHHHHHHhhh
Q 039455 166 TRDEHVL------KGHGVTNIYKVRGLDYVEALQLFHLK 198 (216)
Q Consensus 166 sr~~~~~------~~~~~~~~~~l~~l~~~~~~~ll~~~ 198 (216)
|...... ........+.+++++.++..++++..
T Consensus 306 t~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~ 344 (854)
T 1qvr_A 306 TTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGL 344 (854)
T ss_dssp ECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHH
T ss_pred cCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhh
Confidence 6544321 11123456999999999999999743
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.01 E-value=7.9e-09 Score=91.12 Aligned_cols=154 Identities=14% Similarity=0.090 Sum_probs=89.8
Q ss_pred ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC-C-----CceEeeccccccccccCchHH
Q 039455 25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-F-----EASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~ 98 (216)
.++++||+.+++.+.+.+... ....++|+|++|+|||++++.++..+... . ...+|.........
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~------- 255 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA------- 255 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---C-------
T ss_pred CCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhc-------
Confidence 357899999999999988754 34678999999999999999999876432 1 11222211111000
Q ss_pred HHHHHHHHHhhccccccchhhhHHHHHH-HhCCceEEEEEeCCCCH----------HHHHHhhcCCCCCCCCcEEEEEeC
Q 039455 99 QEQLLSEVLMERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQL----------EQLQALAGNHDWFGFGSRIIITTR 167 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~----------~~~~~l~~~~~~~~~~~~il~tsr 167 (216)
.. ............+.. ....++.+|+|||++.. .+...++..+.. .....+|.+|.
T Consensus 256 ----------~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~ 323 (758)
T 1r6b_X 256 ----------GT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTT 323 (758)
T ss_dssp ----------CC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEEC
T ss_pred ----------cc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeC
Confidence 00 001111222222222 22345789999999754 233334433321 34456677766
Q ss_pred Cchhhhc-------cCCcceEEecCCChHHHHHHHhhhh
Q 039455 168 DEHVLKG-------HGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 168 ~~~~~~~-------~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
..++... ......+.+++.+.++..+++....
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 5432111 1133579999999999999887543
No 56
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.99 E-value=7.1e-09 Score=86.27 Aligned_cols=155 Identities=16% Similarity=0.178 Sum_probs=91.3
Q ss_pred cccccccchhHHHHHHHHHhc---C-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455 24 AVDGLVGIASRMEKMNGYLEA---G-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR 93 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~---~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (216)
.-..++|.++.++++...+.. . ..-.+.++|+||+|+|||+|++.+++.....| +.+. ..... .
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~--~ 87 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFV--E 87 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTT--T
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHH--H
Confidence 446799999988888775431 1 11234689999999999999999998764322 1221 11110 0
Q ss_pred CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCCC--
Q 039455 94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHDW-- 155 (216)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~~-- 155 (216)
.+.. .........+.......+.+|+||+++.. ..+..++..+..
T Consensus 88 ~~~g-----------------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 88 LFVG-----------------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp CCTT-----------------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred HHhc-----------------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence 0000 00112233345555567899999999542 123333322210
Q ss_pred CCCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcC
Q 039455 156 FGFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 156 ~~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
...+..||.||+.++.+.. . .....+.+++.+.++..++++.+...
T Consensus 151 ~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~ 201 (476)
T 2ce7_A 151 SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN 201 (476)
T ss_dssp GGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHh
Confidence 1235667778877654321 1 23458899999999988988776644
No 57
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.97 E-value=1e-08 Score=78.68 Aligned_cols=157 Identities=16% Similarity=0.131 Sum_probs=87.4
Q ss_pred CCcccccccchhHHHHHHHHHhc---C-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEA---G-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV 91 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~---~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
+..-..++|.+...+.+...+.. . ......++|+|++|+|||||++.+++.....+ +.+. ......
T Consensus 8 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~i~-~~~~~~ 83 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GSDFVE 83 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCE---EEEC-SCSSTT
T ss_pred CCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCE---EEEe-HHHHHH
Confidence 34556799999988887765431 1 11235699999999999999999998764221 2222 111100
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCCC
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHDW 155 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~~ 155 (216)
.. . ..........+.......+.++++|+++.. ..+..++..+..
T Consensus 84 ~~-~------------------~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (257)
T 1lv7_A 84 MF-V------------------GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG 144 (257)
T ss_dssp SC-C------------------CCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHT
T ss_pred Hh-h------------------hhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhC
Confidence 00 0 000111122233334456789999988422 112223221110
Q ss_pred --CCCCcEEEEEeCCchhhh-cc----CCcceEEecCCChHHHHHHHhhhhcC
Q 039455 156 --FGFGSRIIITTRDEHVLK-GH----GVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 156 --~~~~~~il~tsr~~~~~~-~~----~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
...+..+|.||..++... .+ .....+.+++.+.++..++++.+...
T Consensus 145 ~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 145 FEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 197 (257)
T ss_dssp CCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred cccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 123456677776654221 11 23467889999999988988876533
No 58
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.96 E-value=3.8e-09 Score=76.79 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=32.0
Q ss_pred chhHHHHHHHHHhcC-CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 31 IASRMEKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 31 R~~~~~~l~~~l~~~-~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+...++.+..++..- ...+..++|+||+|+|||||++.+++.+.
T Consensus 19 ~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp HHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344455555555432 23357899999999999999999999775
No 59
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.95 E-value=1.6e-08 Score=89.19 Aligned_cols=148 Identities=12% Similarity=0.062 Sum_probs=85.7
Q ss_pred ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCC-C----ceEeeccccccccccCchHHH
Q 039455 25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQF-E----ASSFLANVREVSVTRGLVPLQ 99 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~ 99 (216)
.++++||+++++.+...+... ....++++|++|+|||++|+.++..+.... + ...++. . +.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~--~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~----~----~~---- 244 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRR--TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT----L----DM---- 244 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS--SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC----C----------
T ss_pred CCCccCchHHHHHHHHHHhCC--CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE----e----cc----
Confidence 457999999999999988753 235689999999999999999999864321 1 111111 0 00
Q ss_pred HHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc-----
Q 039455 100 EQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG----- 174 (216)
Q Consensus 100 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~----- 174 (216)
... ............+......++.+|++| ...+....+...+. .....+|.+|....+...
T Consensus 245 ---g~~------~~G~~e~~l~~~~~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~ 311 (758)
T 3pxi_A 245 ---GTK------YRGEFEDRLKKVMDEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDA 311 (758)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCS
T ss_pred ---ccc------ccchHHHHHHHHHHHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccH
Confidence 000 000011122233333444678899999 22233333444433 344667777765542110
Q ss_pred --cCCcceEEecCCChHHHHHHHhhhh
Q 039455 175 --HGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 175 --~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
...+..+.+++++.++..+++....
T Consensus 312 al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 312 ALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp HHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred HHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1134679999999999999998654
No 60
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=1.2e-08 Score=81.60 Aligned_cols=155 Identities=14% Similarity=0.216 Sum_probs=86.7
Q ss_pred CcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCc--eEeeccccccccccCchHHHH
Q 039455 23 SAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEA--SSFLANVREVSVTRGLVPLQE 100 (216)
Q Consensus 23 ~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 100 (216)
..-..++|.+..++.|...+..+ ..+.++++||+|+||||+++.+++.+...... +..+. ... .... ....
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~-~~~---~~~~-~~ir 94 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN-ASD---DRGI-DVVR 94 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC-TTS---CCSH-HHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc-Ccc---cccH-HHHH
Confidence 34566899999999998888754 22348999999999999999999976432111 11111 110 0111 1111
Q ss_pred HHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hhhcc-C
Q 039455 101 QLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VLKGH-G 176 (216)
Q Consensus 101 ~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~~-~ 176 (216)
.....+.... ..+.++..++|+|+++.. +....+...+..-.....++++|.... +...+ .
T Consensus 95 ~~i~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~s 159 (340)
T 1sxj_C 95 NQIKDFASTR---------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLS 159 (340)
T ss_dssp THHHHHHHBC---------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHhhc---------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHh
Confidence 1111110000 011234679999999743 222333222211124556677766442 11111 1
Q ss_pred CcceEEecCCChHHHHHHHhhhh
Q 039455 177 VTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 177 ~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
....+.+.+++.++..+.+...+
T Consensus 160 R~~~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 160 QCTRFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHH
T ss_pred hceeEeccCCCHHHHHHHHHHHH
Confidence 23578999999999999888765
No 61
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.91 E-value=5.8e-08 Score=77.50 Aligned_cols=159 Identities=15% Similarity=0.060 Sum_probs=85.4
Q ss_pred cchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhh
Q 039455 30 GIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLME 109 (216)
Q Consensus 30 gR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 109 (216)
..++..+.+...+..+ .-...+.++||+|+|||++|+.++..+....... ... + .....+..+...-...
T Consensus 6 w~~~~~~~l~~~i~~~-~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~-c-------~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAG-RGHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKS-C-------GHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GGHHHHHHHHHHHHTT-CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBC-C-------SCSHHHHHHHHTCCTT
T ss_pred chHHHHHHHHHHHHcC-CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCC-C-------CCCHHHHHHhcCCCCC
Confidence 3456667777776643 2345799999999999999999998765332110 000 0 0000011100000000
Q ss_pred ---ccc----cccchhhhHHHHHHHh-----CCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCch-hhhc
Q 039455 110 ---RNL----IIWDVHKGINLIRWRL-----CRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDEH-VLKG 174 (216)
Q Consensus 110 ---~~~----~~~~~~~~~~~l~~~l-----~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~~-~~~~ 174 (216)
... .....+... .+.+.+ .+++.++|||+++.. +....++..+..-..+..+|++|+.++ +...
T Consensus 76 ~~~~~~~~~~~~~~i~~ir-~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~t 154 (334)
T 1a5t_A 76 YYTLAPEKGKNTLGVDAVR-EVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLAT 154 (334)
T ss_dssp EEEECCCTTCSSBCHHHHH-HHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHH
T ss_pred EEEEeccccCCCCCHHHHH-HHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 000 001111111 122222 245779999999854 334445444332234566777776653 2222
Q ss_pred c-CCcceEEecCCChHHHHHHHhhhh
Q 039455 175 H-GVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 175 ~-~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
+ .....+++++++.++..+++....
T Consensus 155 i~SRc~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 155 LRSRCRLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHC
T ss_pred HhhcceeeeCCCCCHHHHHHHHHHhc
Confidence 1 233689999999999999998775
No 62
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.89 E-value=1e-08 Score=80.88 Aligned_cols=49 Identities=18% Similarity=0.218 Sum_probs=39.7
Q ss_pred cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..++|++..++.+...+.........+.|+|++|+|||++|+.+.....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~ 50 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSA 50 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence 3589999999999887764333446789999999999999999988653
No 63
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.89 E-value=1.3e-09 Score=76.90 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=28.2
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
.+..++|+|++|+|||||++.+++.+......+.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~ 71 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID 71 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence 4578999999999999999999997764322244543
No 64
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.88 E-value=8.2e-09 Score=79.65 Aligned_cols=49 Identities=22% Similarity=0.144 Sum_probs=36.5
Q ss_pred cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+.++|++..++.+.+.+..-......+.|+|++|+|||++|+.++....
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred ccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 4589999999998876653223346889999999999999999998654
No 65
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.86 E-value=3.4e-08 Score=77.82 Aligned_cols=146 Identities=14% Similarity=0.043 Sum_probs=86.2
Q ss_pred cchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc---CCCCceEeeccccccccccCchHHHHHHHHHH
Q 039455 30 GIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK---DQFEASSFLANVREVSVTRGLVPLQEQLLSEV 106 (216)
Q Consensus 30 gR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 106 (216)
|.++.++.|...+..+. .+.+.++||+|+|||++++.++..+. ...+...++...+. .... +....+....
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~---~~~i-d~ir~li~~~ 74 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---NIGI-DDIRTIKDFL 74 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---CBCH-HHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC---CCCH-HHHHHHHHHH
Confidence 45667778888877643 68999999999999999999987531 22344444431100 1111 1122222221
Q ss_pred HhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc-hhhhccCCcceEEe
Q 039455 107 LMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE-HVLKGHGVTNIYKV 183 (216)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~-~~~~~~~~~~~~~l 183 (216)
... ...++.-++|+|+++.. +..+.++..+..-.+.+.+|++|.++ .+...+..- .+++
T Consensus 75 ~~~-----------------p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f 136 (305)
T 2gno_A 75 NYS-----------------PELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRV 136 (305)
T ss_dssp TSC-----------------CSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEE
T ss_pred hhc-----------------cccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeC
Confidence 100 01234679999999754 34444443333223456677776554 333333333 9999
Q ss_pred cCCChHHHHHHHhhhh
Q 039455 184 RGLDYVEALQLFHLKV 199 (216)
Q Consensus 184 ~~l~~~~~~~ll~~~~ 199 (216)
+|++.++..+.+.+..
T Consensus 137 ~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 137 VVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ECCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998775
No 66
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.85 E-value=1.9e-08 Score=79.16 Aligned_cols=51 Identities=27% Similarity=0.321 Sum_probs=39.9
Q ss_pred cccccchhHHHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 26 DGLVGIASRMEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
..++|.+..++.+...+... ......++++||+|+|||++|+.+++.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~ 74 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT 74 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC
Confidence 34789999999988876632 1113589999999999999999999976543
No 67
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.83 E-value=1.6e-08 Score=88.76 Aligned_cols=167 Identities=15% Similarity=0.148 Sum_probs=96.2
Q ss_pred ccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455 25 VDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR 93 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (216)
.....|-++.+++|.+.+.. +-.-.+.|.++||+|+|||+||+.+++.+..+ .+.+. ...
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~---~~~v~-~~~----- 273 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF---FFLIN-GPE----- 273 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCE---EEEEE-HHH-----
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCe---EEEEE-hHH-----
Confidence 35678889988888876531 11235789999999999999999999876432 22222 111
Q ss_pred CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH-------------HHHHHhhcCCCCC--CC
Q 039455 94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL-------------EQLQALAGNHDWF--GF 158 (216)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~-------------~~~~~l~~~~~~~--~~ 158 (216)
+.. . +.......+...+..+....+.+|+||+++.+ .-+..++..+... ..
T Consensus 274 --------l~s----k--~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~ 339 (806)
T 3cf2_A 274 --------IMS----K--LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA 339 (806)
T ss_dssp --------HHS----S--CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG
T ss_pred --------hhc----c--cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC
Confidence 100 0 00111122233444455677999999998643 1122333221110 12
Q ss_pred CcEEEEEeCCchhhhc-c----CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455 159 GSRIIITTRDEHVLKG-H----GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK 214 (216)
Q Consensus 159 ~~~il~tsr~~~~~~~-~----~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~ 214 (216)
+..+|.||..++.+.. + ..+..++++..+.++..++|+.+..... ..+-++..|++
T Consensus 340 ~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~ 401 (806)
T 3cf2_A 340 HVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVAN 401 (806)
T ss_dssp CEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHH
T ss_pred CEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHH
Confidence 3455666665433221 1 2467899999999999999987764433 23334555553
No 68
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.82 E-value=2.6e-07 Score=70.67 Aligned_cols=157 Identities=13% Similarity=0.122 Sum_probs=84.5
Q ss_pred CCCcccccccchhHHHHHHHHHhc--C--------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc
Q 039455 21 FPSAVDGLVGIASRMEKMNGYLEA--G--------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS 90 (216)
Q Consensus 21 ~~~~~~~~vgR~~~~~~l~~~l~~--~--------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (216)
++...+.++|.+....++...... . ..-.+.++|+||+|+|||||++.+++.... + .+.+. ...
T Consensus 11 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~--~-~i~~~-~~~-- 84 (254)
T 1ixz_A 11 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV--P-FITAS-GSD-- 84 (254)
T ss_dssp CSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC--C-EEEEE-HHH--
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--C-EEEee-HHH--
Confidence 344557789998887777654321 0 011234999999999999999999987642 1 22221 000
Q ss_pred cccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHh-CCceEEEEEeCCCCHH----------------HHHHhhcCC
Q 039455 91 VTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRL-CRKRVLVVLDDVDQLE----------------QLQALAGNH 153 (216)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~llvlDd~~~~~----------------~~~~l~~~~ 153 (216)
+... . ..........+.+.. ...+.++++||++... .+..++..+
T Consensus 85 -----------~~~~----~---~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l 146 (254)
T 1ixz_A 85 -----------FVEM----F---VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 146 (254)
T ss_dssp -----------HHHS----C---TTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHH
T ss_pred -----------HHHH----H---hhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHH
Confidence 0000 0 000001111222222 2457899999985321 122332222
Q ss_pred CCC--CCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcC
Q 039455 154 DWF--GFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 154 ~~~--~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
... +....++.+|..+..... ......+.+++.+.++..++++.....
T Consensus 147 ~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~ 201 (254)
T 1ixz_A 147 DGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 201 (254)
T ss_dssp HTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTT
T ss_pred hCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcC
Confidence 110 122344556666554322 124578999999999999999876533
No 69
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.81 E-value=6.3e-09 Score=72.87 Aligned_cols=48 Identities=19% Similarity=0.168 Sum_probs=35.3
Q ss_pred cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..++|++..++.+.+.+..-......+.|+|++|+|||++|+.++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 358999999999988766322233578999999999999999987654
No 70
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.80 E-value=2.4e-08 Score=78.45 Aligned_cols=49 Identities=22% Similarity=0.228 Sum_probs=39.4
Q ss_pred cccccchhHHHHHHHHHhc------------CCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 26 DGLVGIASRMEKMNGYLEA------------GLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~------------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..++|++..++.+...+.. .......+.|+|++|+|||++++.++..+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999998877653 112346889999999999999999998774
No 71
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.78 E-value=3.1e-08 Score=75.30 Aligned_cols=65 Identities=12% Similarity=-0.015 Sum_probs=40.0
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.+...-.+.+.+..++-++++|+.-+. ..+..++........+..+|++||+.+.... ++..+.+
T Consensus 131 GqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~--~d~v~~l 201 (237)
T 2cbz_A 131 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQ--VDVIIVM 201 (237)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGG--SSEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHh--CCEEEEE
Confidence 344455678888889999999988421 2333333211111247789999999877643 4555444
No 72
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.73 E-value=6e-07 Score=69.66 Aligned_cols=158 Identities=14% Similarity=0.154 Sum_probs=85.1
Q ss_pred CCCcccccccchhHHHHHHHHHhc--C--------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccc
Q 039455 21 FPSAVDGLVGIASRMEKMNGYLEA--G--------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVS 90 (216)
Q Consensus 21 ~~~~~~~~vgR~~~~~~l~~~l~~--~--------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (216)
++...+.++|.++..+++...... . -.-.+.++|+||+|+|||||++.+++.... + .+.+. ...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~--~-~i~~~-~~~-- 108 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV--P-FITAS-GSD-- 108 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC--C-EEEEE-HHH--
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC--C-EEEec-HHH--
Confidence 444567899999888877664321 0 011234999999999999999999987642 1 22221 110
Q ss_pred cccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCC
Q 039455 91 VTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHD 154 (216)
Q Consensus 91 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~ 154 (216)
+...... .........+.......+.++++||++.. ..+..++..+.
T Consensus 109 -----------~~~~~~~------~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~ls 171 (278)
T 1iy2_A 109 -----------FVEMFVG------VGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 171 (278)
T ss_dssp -----------HHHSTTT------HHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHT
T ss_pred -----------HHHHHhh------HHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHh
Confidence 0000000 00000111122222345689999998532 11223332222
Q ss_pred CC--CCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcC
Q 039455 155 WF--GFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 155 ~~--~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
.. +....++.++..+..... ......+.+++.+.++..++++.+...
T Consensus 172 gg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~ 225 (278)
T 1iy2_A 172 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 225 (278)
T ss_dssp TCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred CCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc
Confidence 11 122344556665544321 124578999999999999999876533
No 73
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.72 E-value=3.3e-08 Score=75.91 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=37.7
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+...-.+...+..++-++++|+.-+ ...+..++..+. ..+..||++||+.+.+..+
T Consensus 151 q~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tiiivtHd~~~~~~~ 212 (256)
T 1vpl_A 151 MVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS--QEGLTILVSSHNMLEVEFL 212 (256)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEEECCHHHHTTT
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHH--hCCCEEEEEcCCHHHHHHH
Confidence 3445568888999999999998742 233444443332 2367899999998776654
No 74
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.72 E-value=1.2e-07 Score=74.21 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=23.9
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
....++++||+|+|||+||+.+++.+.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346889999999999999999999874
No 75
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.72 E-value=2.2e-08 Score=72.27 Aligned_cols=53 Identities=11% Similarity=0.050 Sum_probs=34.8
Q ss_pred hHHHHHHHhCCceEEEEEeCCCCH----------------------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQL----------------------EQLQALAGNHDWFGFGSRIIITTRDEHVLKG 174 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~~----------------------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~ 174 (216)
....+...+..++-++++|+..+. ..+..++..+. ..|..+|++||+.+.+..
T Consensus 90 qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~--~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 90 PLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQ--REGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHH--HHTCSEEEEECSHHHHHH
T ss_pred HHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHH--hcCCcEEEEeCCHHHhhh
Confidence 344678888899999999987321 22233333222 347789999999876654
No 76
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.71 E-value=1.2e-07 Score=83.59 Aligned_cols=148 Identities=14% Similarity=0.136 Sum_probs=82.8
Q ss_pred cccccchhHHHHHHHHHhcC-----C--CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHH
Q 039455 26 DGLVGIASRMEKMNGYLEAG-----L--DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPL 98 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~-----~--~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (216)
..++|.+..++.+...+... . .....+.++||+|+|||++|+.+++.........+.+. ++.........
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-- 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-- 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC--
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc--
Confidence 46899999998888776521 1 11237999999999999999999987643322233333 22222111111
Q ss_pred HHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH--HHHHHhhcC-----CCC------CCCCcEEEEE
Q 039455 99 QEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL--EQLQALAGN-----HDW------FGFGSRIIIT 165 (216)
Q Consensus 99 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~--~~~~~l~~~-----~~~------~~~~~~il~t 165 (216)
.......+.. ....+|+||+++.. +....++.. +.. ...+..||+|
T Consensus 568 ------------------~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 568 ------------------GGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ---------------------CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ------------------cchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 0001111111 12349999999743 222222211 111 1235678888
Q ss_pred eCCc-----------------hhhhccCCcceEEecCCChHHHHHHHhhhh
Q 039455 166 TRDE-----------------HVLKGHGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 166 sr~~-----------------~~~~~~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
|... ++.++ .+..+.+.|++.++..+++....
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~R--l~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINR--IDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTT--SSEEEECC--CHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhh--CCeEEecCCCCHHHHHHHHHHHH
Confidence 8731 12222 34689999999999888886543
No 77
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.71 E-value=4.9e-08 Score=73.56 Aligned_cols=61 Identities=11% Similarity=0.168 Sum_probs=39.9
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...-.+...+..++-++++|+.-+ ...+..++..+. ..+..||++||+.+.. .+ ++..+.+
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~--~~g~tvi~vtHd~~~~-~~-~d~v~~l 212 (224)
T 2pcj_A 146 QQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN--EGGTSIVMVTHERELA-EL-THRTLEM 212 (224)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHH-TT-SSEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEcCCHHHH-Hh-CCEEEEE
Confidence 344568888889999999998732 233334443332 2367899999998765 33 5555554
No 78
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.71 E-value=1.7e-08 Score=77.45 Aligned_cols=127 Identities=14% Similarity=0.159 Sum_probs=67.4
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCC------ceEeeccccccccccC-------------------ch---HHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVREVSVTRG-------------------LV---PLQ 99 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-------------------~~---~~~ 99 (216)
.+.+++|.|++|+|||||++.+++.+..... .+.|+.-......... .. ...
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~ 109 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHH
Confidence 4579999999999999999999985432211 1112210000000000 00 111
Q ss_pred HHHHHHHHhh-----ccccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCC
Q 039455 100 EQLLSEVLME-----RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRD 168 (216)
Q Consensus 100 ~~l~~~~~~~-----~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~ 168 (216)
..++..+... .....+..+...-.+...+..++-++++|+.-+ ...+..++..+.. ..+..||++||+
T Consensus 110 ~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~~g~tvi~vtHd 188 (253)
T 2nq2_C 110 MQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQ-SQNMTVVFTTHQ 188 (253)
T ss_dssp HHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHH-TSCCEEEEEESC
T ss_pred HHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEecC
Confidence 2222222111 011122233445568888889999999998742 2333444433320 126789999999
Q ss_pred chhhhcc
Q 039455 169 EHVLKGH 175 (216)
Q Consensus 169 ~~~~~~~ 175 (216)
.+.+..+
T Consensus 189 ~~~~~~~ 195 (253)
T 2nq2_C 189 PNQVVAI 195 (253)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8766543
No 79
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.70 E-value=1.6e-07 Score=70.92 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=39.3
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHh-hcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQAL-AGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l-~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
+...-.+.+.+..++-++++|+.-+. ..+..+ ...+ ..+..+|++||+.+.... ++..+.+.
T Consensus 135 qkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~---~~~~tvi~vtH~~~~~~~--~d~v~~l~ 203 (229)
T 2pze_A 135 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL---MANKTRILVTSKMEHLKK--ADKILILH 203 (229)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCC---TTTSEEEEECCCHHHHHH--CSEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHh---hCCCEEEEEcCChHHHHh--CCEEEEEE
Confidence 34455678888899999999988422 223332 2222 236789999999876643 45555443
No 80
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.70 E-value=9.3e-07 Score=74.02 Aligned_cols=153 Identities=15% Similarity=0.161 Sum_probs=86.9
Q ss_pred CCcccccccchhHHHHHHHHHh---cC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccc
Q 039455 22 PSAVDGLVGIASRMEKMNGYLE---AG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSV 91 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~---~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (216)
+..-..++|.+....++..... .. ..-.+.++|+||+|+|||+|++.+++.... + .+.+. .....
T Consensus 27 ~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~--~-~i~i~-g~~~~- 101 (499)
T 2dhr_A 27 KVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV--P-FITAS-GSDFV- 101 (499)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC--C-EEEEE-GGGGT-
T ss_pred CCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC--C-EEEEe-hhHHH-
Confidence 3445679999998888776543 11 011235999999999999999999987642 2 22222 11110
Q ss_pred ccCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhC----CceEEEEEeCCCCH----------------HHHHHhhc
Q 039455 92 TRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLC----RKRVLVVLDDVDQL----------------EQLQALAG 151 (216)
Q Consensus 92 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~----~~~~llvlDd~~~~----------------~~~~~l~~ 151 (216)
.... ......+...++ ..+.++++||++.. ..+..++.
T Consensus 102 -~~~~---------------------g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~ 159 (499)
T 2dhr_A 102 -EMFV---------------------GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 159 (499)
T ss_dssp -SSCT---------------------THHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH
T ss_pred -Hhhh---------------------hhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH
Confidence 0000 001112222232 24679999998532 12233332
Q ss_pred CCCC--CCCCcEEEEEeCCchhhhc-----cCCcceEEecCCChHHHHHHHhhhhcC
Q 039455 152 NHDW--FGFGSRIIITTRDEHVLKG-----HGVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 152 ~~~~--~~~~~~il~tsr~~~~~~~-----~~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
.+.- ......++.+|+.+..+.. ...+..+.+.+.+.++..++|+.+...
T Consensus 160 ~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~ 216 (499)
T 2dhr_A 160 EMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 216 (499)
T ss_dssp HGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS
T ss_pred HhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhc
Confidence 2221 1223445566666654321 124568999999999999999876533
No 81
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.69 E-value=2.4e-07 Score=78.61 Aligned_cols=155 Identities=17% Similarity=0.179 Sum_probs=80.2
Q ss_pred ccccchhHHHHHHHHHh----cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH
Q 039455 27 GLVGIASRMEKMNGYLE----AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL 102 (216)
Q Consensus 27 ~~vgR~~~~~~l~~~l~----~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (216)
..+|-++..+.+...+. .....+..++|+||+|+|||||++.++......+.. +. +................
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~---i~-~~~~~~~~~~~g~~~~~ 157 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVR---IS-LGGVRDESEIRGHRRTY 157 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEE---EC-CCC--------------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEE---EE-ecccchhhhhhhHHHHH
Confidence 36888877777765433 112356799999999999999999999877433211 11 11100000000000000
Q ss_pred HHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHHH------HHHhhcCCCC--------CC-------CCcE
Q 039455 103 LSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLEQ------LQALAGNHDW--------FG-------FGSR 161 (216)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~~------~~~l~~~~~~--------~~-------~~~~ 161 (216)
. ..........+......++ +++||+++.... ...++..+.. .. ....
T Consensus 158 i----------g~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~ 226 (543)
T 3m6a_A 158 V----------GAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVL 226 (543)
T ss_dssp ----------------CHHHHHHTTCSSSE-EEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCE
T ss_pred h----------ccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceE
Confidence 0 0011112222333223344 888999975421 1333322211 00 2345
Q ss_pred EEEEeCCch-----hhhccCCcceEEecCCChHHHHHHHhhhh
Q 039455 162 IIITTRDEH-----VLKGHGVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 162 il~tsr~~~-----~~~~~~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
+|.||.... +.++ ...+.+++++.++..+++..+.
T Consensus 227 iI~ttN~~~~l~~aL~~R---~~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 227 FIATANNLATIPGPLRDR---MEIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEECSSTTTSCHHHHHH---EEEEECCCCCHHHHHHHHHHTH
T ss_pred EEeccCccccCCHHHHhh---cceeeeCCCCHHHHHHHHHHHH
Confidence 666666543 2333 2579999999999999988764
No 82
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.68 E-value=3.4e-08 Score=76.13 Aligned_cols=62 Identities=8% Similarity=0.119 Sum_probs=39.8
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...-.+...+..++-+|++|+.-+ ...+..++..+. ..+..||++||+.+.+..+ ++..+.+
T Consensus 165 kQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~--~~g~tvi~vtHd~~~~~~~-~d~v~~l 232 (263)
T 2olj_A 165 AQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLA--NEGMTMVVVTHEMGFAREV-GDRVLFM 232 (263)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHHHHH-CSEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH--hCCCEEEEEcCCHHHHHHh-CCEEEEE
Confidence 344468888899999999998732 233444443332 2367899999998776554 3343333
No 83
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.68 E-value=7.7e-08 Score=77.26 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=38.9
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+.....+.+.+..+|-+|++|+.-+. ..+..++..+. ...+..||++||+.+.+..+
T Consensus 167 GqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~-~~~g~Tii~vTHdl~~~~~~ 230 (366)
T 3tui_C 167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDIN-RRLGLTILLITHEMDVVKRI 230 (366)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH-HHSCCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHH-HhCCCEEEEEecCHHHHHHh
Confidence 344455789999999999999987422 33333333321 02378899999998776654
No 84
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.65 E-value=5.1e-08 Score=73.99 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=40.2
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+...-.+.+.+..++-+|++|+.-+. ..+..++..+.. ..+..||++||+.+.. .+ ++..+.+
T Consensus 150 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~g~tvi~vtHd~~~~-~~-~d~i~~l 218 (235)
T 3tif_A 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNE-EDGKTVVVVTHDINVA-RF-GERIIYL 218 (235)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHCCEEEEECSCHHHH-TT-SSEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-HcCCEEEEEcCCHHHH-Hh-CCEEEEE
Confidence 34455688899999999999987421 333333333220 1368899999998865 33 5555544
No 85
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=98.64 E-value=4e-08 Score=75.80 Aligned_cols=54 Identities=9% Similarity=0.125 Sum_probs=36.0
Q ss_pred hHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 120 GINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 120 ~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
....+...+..++-+|++|+.-+ ...+..++..+. ..+..||++||+.+.+..+
T Consensus 160 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~--~~g~tvi~vtHd~~~~~~~ 219 (262)
T 1b0u_A 160 QRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLA--EEGKTMVVVTHEMGFARHV 219 (262)
T ss_dssp HHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHH--HTTCCEEEECSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHh
Confidence 34467888888999999998732 233444443332 2367899999998776554
No 86
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.64 E-value=4.1e-08 Score=74.72 Aligned_cols=57 Identities=11% Similarity=0.135 Sum_probs=37.3
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+...-.+...+..++-++++|+.-+ ...+..++..+. ..+..||++||+.+.+..+
T Consensus 143 Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~--~~g~tvi~vtHd~~~~~~~ 205 (240)
T 1ji0_A 143 GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKIN--QEGTTILLVEQNALGALKV 205 (240)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHHHh
Confidence 34445568888999999999998732 233444443332 2467899999998665443
No 87
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.62 E-value=6.1e-08 Score=72.45 Aligned_cols=55 Identities=18% Similarity=0.050 Sum_probs=37.0
Q ss_pred hhhHHHHHHHhCCceEEEEEeCC------CCHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDV------DQLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG 174 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~------~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~ 174 (216)
+...-.+...+..++-++++|+. .....+..++..+. ..+..||++||+.+.+..
T Consensus 138 qkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~--~~g~tiiivtHd~~~~~~ 198 (214)
T 1sgw_A 138 TIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL--KEKGIVIISSREELSYCD 198 (214)
T ss_dssp HHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--HHHSEEEEEESSCCTTSS
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHH
Confidence 33444678888899999999976 23445555544332 235789999999866544
No 88
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.62 E-value=1.7e-06 Score=67.06 Aligned_cols=152 Identities=16% Similarity=0.082 Sum_probs=81.0
Q ss_pred cccccccchhHHHHHHHHHh----------c-CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccc
Q 039455 24 AVDGLVGIASRMEKMNGYLE----------A-GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT 92 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~----------~-~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (216)
....+.|-++..++|...+. . .-.-.+-++|+||+|+|||||++.+++.... ..+++. ..... .
T Consensus 8 ~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~---~~i~i~-g~~l~-~ 82 (274)
T 2x8a_A 8 TWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL---NFISVK-GPELL-N 82 (274)
T ss_dssp ----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC---EEEEEE-TTTTC-S
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC---CEEEEE-cHHHH-h
Confidence 34567788877777766432 0 1111233999999999999999999987643 223332 11100 0
Q ss_pred cCchHHHHHHHHHHHhhccccccchhhhHHHHHH-HhCCceEEEEEeCCCCHH-------------HHHHhhcCCCC--C
Q 039455 93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW-RLCRKRVLVVLDDVDQLE-------------QLQALAGNHDW--F 156 (216)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~~~llvlDd~~~~~-------------~~~~l~~~~~~--~ 156 (216)
...... .. ....+.+ .....+.++++|+++... ....++..+.- .
T Consensus 83 ~~~~~~-~~------------------~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~ 143 (274)
T 2x8a_A 83 MYVGES-ER------------------AVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA 143 (274)
T ss_dssp STTHHH-HH------------------HHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS
T ss_pred hhhhHH-HH------------------HHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc
Confidence 000000 00 1111111 112457899999986431 11222211110 1
Q ss_pred CCCcEEEEEeCCchhhhcc-----CCcceEEecCCChHHHHHHHhhhh
Q 039455 157 GFGSRIIITTRDEHVLKGH-----GVTNIYKVRGLDYVEALQLFHLKV 199 (216)
Q Consensus 157 ~~~~~il~tsr~~~~~~~~-----~~~~~~~l~~l~~~~~~~ll~~~~ 199 (216)
.....++.+|..+..+... ..+..+.++..+.++..++|+...
T Consensus 144 ~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 144 RQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred cCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 2234456677766553321 356789999999999999998765
No 89
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.62 E-value=1.6e-07 Score=72.42 Aligned_cols=59 Identities=14% Similarity=0.053 Sum_probs=39.0
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCc-ceEEe
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVT-NIYKV 183 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~-~~~~l 183 (216)
...-.+...+..++-++++|+.-+ ...+..++..+. . .+|++||+.+.+..+ ++ ..+.+
T Consensus 134 kqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~---~--tviivtHd~~~~~~~-~d~~i~~l 199 (263)
T 2pjz_A 134 SVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG---K--EGILVTHELDMLNLY-KEYKAYFL 199 (263)
T ss_dssp HHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC---S--EEEEEESCGGGGGGC-TTSEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc---C--cEEEEEcCHHHHHHh-cCceEEEE
Confidence 344467888888999999998732 234444444443 2 899999998776554 44 54544
No 90
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.62 E-value=1e-07 Score=73.68 Aligned_cols=56 Identities=16% Similarity=0.227 Sum_probs=37.3
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+...-.+...+..++-++++|+.-+ ...+..++..+. ..+..||++||+.+.+..+
T Consensus 143 q~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tii~vtHd~~~~~~~ 204 (266)
T 2yz2_A 143 EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWK--TLGKTVILISHDIETVINH 204 (266)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCCTTTGGG
T ss_pred HHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHHHh
Confidence 3345568888999999999998742 233444443332 2367899999998766543
No 91
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.62 E-value=2.6e-07 Score=81.82 Aligned_cols=153 Identities=16% Similarity=0.179 Sum_probs=88.2
Q ss_pred cccccccchhHHHHHHHHHhc-----------CCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccc
Q 039455 24 AVDGLVGIASRMEKMNGYLEA-----------GLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVT 92 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~~l~~-----------~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (216)
....++|.+..++.|.+++.. .-..+..++|+|++|+|||||++.+++.+...+ +.+. .....
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~---i~v~-~~~l~-- 275 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIM-- 275 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE---EEEE-HHHHS--
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE---EEEE-chHhh--
Confidence 346799999999999887753 223457899999999999999999998753221 2222 11100
Q ss_pred cCchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCCCC
Q 039455 93 RGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHDWF 156 (216)
Q Consensus 93 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~~~ 156 (216)
....... .......+.......+.++++|+++.. ..+..++..+. .
T Consensus 276 ~~~~g~~-----------------~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-~ 337 (806)
T 1ypw_A 276 SKLAGES-----------------ESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-Q 337 (806)
T ss_dssp SSSTTHH-----------------HHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-T
T ss_pred hhhhhhH-----------------HHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-c
Confidence 0000000 011111222233345789999998422 11222222222 1
Q ss_pred CCCcEEEEEeCCchhhhc-c----CCcceEEecCCChHHHHHHHhhhhc
Q 039455 157 GFGSRIIITTRDEHVLKG-H----GVTNIYKVRGLDYVEALQLFHLKVS 200 (216)
Q Consensus 157 ~~~~~il~tsr~~~~~~~-~----~~~~~~~l~~l~~~~~~~ll~~~~~ 200 (216)
.....++.+|+.+..... + .....+.+...+.++..+++.....
T Consensus 338 ~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~ 386 (806)
T 1ypw_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTK 386 (806)
T ss_dssp TSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTT
T ss_pred cccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHh
Confidence 234566667766533221 1 2346688999999999999987653
No 92
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.61 E-value=2.8e-07 Score=72.04 Aligned_cols=61 Identities=13% Similarity=0.065 Sum_probs=38.4
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHh-hcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQAL-AGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l-~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+...-.+.+.+..++-++++|+.-+. ..+..+ ...+ ..+..||++||+.+.... ++..+.+
T Consensus 164 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~---~~~~tviivtHd~~~~~~--~d~i~~l 231 (290)
T 2bbs_A 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL---MANKTRILVTSKMEHLKK--ADKILIL 231 (290)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCC---TTTSEEEEECCCHHHHHH--SSEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHh---hCCCEEEEEecCHHHHHc--CCEEEEE
Confidence 34455678888889999999988422 223332 2222 246789999999876643 4444433
No 93
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.60 E-value=7.1e-08 Score=74.82 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=40.6
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+...-.+...+..++-+|++|+.-+ ...+..++..+.. ..+..||++||+.+.+..+ ++..+-+
T Consensus 148 qkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~-~~g~tvi~vtHdl~~~~~~-~drv~~l 217 (275)
T 3gfo_A 148 QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQK-ELGITIIIATHDIDIVPLY-CDNVFVM 217 (275)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HHCCEEEEEESCCSSGGGG-CSEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHh-hCCCEEEEEecCHHHHHHh-CCEEEEE
Confidence 3445568889999999999998732 1333333333210 1267899999998776654 3444333
No 94
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.59 E-value=6.4e-08 Score=74.43 Aligned_cols=55 Identities=11% Similarity=0.075 Sum_probs=36.5
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
...-.+...+..++-+|++|+.-+ ...+..++..+. ..+..||++||+.+.+..+
T Consensus 159 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~~~ 219 (257)
T 1g6h_A 159 MKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK--AKGITFLIIEHRLDIVLNY 219 (257)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCCSTTGGG
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEEecCHHHHHHh
Confidence 344467788888899999998732 233444443332 2367899999998766554
No 95
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.58 E-value=1.1e-07 Score=76.25 Aligned_cols=58 Identities=10% Similarity=0.095 Sum_probs=37.3
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+.....+.+.+..++-+|++|+.-+ ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus 149 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~a~~~ 212 (355)
T 1z47_A 149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHD-EMGVTSVFVTHDQEEALEV 212 (355)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHH-HHTCEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEECCCHHHHHHh
Confidence 34445578899999999999998732 1233333332210 1267899999998765544
No 96
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.57 E-value=3.2e-07 Score=70.90 Aligned_cols=63 Identities=19% Similarity=0.093 Sum_probs=41.2
Q ss_pred hhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...-.+...+..++-+|++|+.-+ ...+..++..+. ..+..||++||+.+....+.++..+.+
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~--~~g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLR--DGKRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTC--CSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 344467788888899999998732 244555555553 347889999999877655323444433
No 97
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.56 E-value=1.3e-07 Score=75.96 Aligned_cols=58 Identities=14% Similarity=0.080 Sum_probs=37.1
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+.....+.+.+..++-+|++|+.-+ ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus 137 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~a~~~ 200 (362)
T 2it1_A 137 GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK-ELGITTVYVTHDQAEALAM 200 (362)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHH-HHTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH-hCCCEEEEECCCHHHHHHh
Confidence 34445578899999999999997731 2333333333210 1267899999998765443
No 98
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.56 E-value=5e-08 Score=74.60 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=24.3
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
.+..++|.|++|+|||||++.+++.+..
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 4579999999999999999999986543
No 99
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.55 E-value=6.7e-08 Score=74.66 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=23.7
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.+..++|.|++|+|||||++.+++.+.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 457999999999999999999998543
No 100
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.55 E-value=4.8e-07 Score=66.70 Aligned_cols=61 Identities=15% Similarity=0.121 Sum_probs=40.9
Q ss_pred cccccccchh----HHHHHHHHHhcCCCC--eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 24 AVDGLVGIAS----RMEKMNGYLEAGLDD--VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 24 ~~~~~vgR~~----~~~~l~~~l~~~~~~--~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
.-+.|++.+. .++.+..++...... ...+.|+|++|+|||+|++.++.........+.|+.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3456776543 444556666543221 278999999999999999999998765544455543
No 101
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.55 E-value=1.4e-07 Score=76.18 Aligned_cols=58 Identities=16% Similarity=0.081 Sum_probs=36.7
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+.....+.+.+..++-+|++|+.-+. ..+..++..+.. ..+..+|++||+.+.+..+
T Consensus 137 GqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~-~~g~tii~vTHd~~ea~~~ 200 (381)
T 3rlf_A 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHK-RLGRTMIYVTHDQVEAMTL 200 (381)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHCCEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-hCCCEEEEEECCHHHHHHh
Confidence 344455688888889999999987321 233333322210 1367899999998765544
No 102
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.54 E-value=1.5e-07 Score=72.10 Aligned_cols=63 Identities=19% Similarity=0.134 Sum_probs=40.2
Q ss_pred hhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 119 KGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 119 ~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
...-.+...+..++-+|++|+.- ....+..++..+. ..+..||++||+.+.+..+.++..+.+
T Consensus 149 kQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~~~~~d~v~~l 217 (250)
T 2d2e_A 149 KKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR--GPNFGALVITHYQRILNYIQPDKVHVM 217 (250)
T ss_dssp HHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHC--STTCEEEEECSSSGGGGTSCCSEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--hcCCEEEEEecCHHHHHHhcCCEEEEE
Confidence 33445777888889999999773 2234444444443 246789999999877665423444433
No 103
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.54 E-value=1.5e-07 Score=70.22 Aligned_cols=44 Identities=20% Similarity=0.176 Sum_probs=31.5
Q ss_pred HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
|...+..+-..+.+++|.|++|+|||||+..++. . ....+.|++
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~ 52 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD 52 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence 4444443434568999999999999999999998 2 234566664
No 104
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.53 E-value=9e-08 Score=72.85 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=22.4
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
+.+.+++|.||+|+|||||++.++.
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4568999999999999999999984
No 105
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.52 E-value=6.1e-07 Score=67.30 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=28.0
Q ss_pred HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
|...+..+-..+.+++|.|++|+|||||++.++....
T Consensus 14 LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 14 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp HHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3334433334568999999999999999999998543
No 106
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.52 E-value=2.2e-07 Score=74.46 Aligned_cols=58 Identities=12% Similarity=0.133 Sum_probs=37.8
Q ss_pred chhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHH-hhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 116 DVHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQA-LAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 116 ~~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~-l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
..+.....+.+.+..++-+|++|+.-+- ..+.. +..... ..+..+|++||+.+.+..+
T Consensus 141 GGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~--~~g~tvi~vTHd~~ea~~~ 205 (359)
T 3fvq_A 141 GGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALR--ANGKSAVFVSHDREEALQY 205 (359)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH--HTTCEEEEECCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHH
Confidence 3445566789999999999999987321 22322 222111 2468899999998765544
No 107
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=98.52 E-value=8e-08 Score=73.10 Aligned_cols=57 Identities=16% Similarity=0.006 Sum_probs=36.4
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+...-.+...+..++-++++|+.-+ ...+..++..+.. ..+..||++||+.+.+..+
T Consensus 131 qkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~~g~tvi~vtHd~~~~~~~ 193 (240)
T 2onk_A 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR-EFDVPILHVTHDLIEAAML 193 (240)
T ss_dssp HHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHH-HHTCCEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 3445568889999999999998732 1333333333210 1257799999998765443
No 108
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.51 E-value=2.7e-07 Score=71.47 Aligned_cols=63 Identities=16% Similarity=0.162 Sum_probs=41.2
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+...-.+.+.+..++-+|++|+.-+ ...+..++..+.. ..+..||++||+.+.+.. ++..+.+
T Consensus 161 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~g~tviivtHd~~~~~~--~d~v~~l 229 (271)
T 2ixe_A 161 QRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPE-WASRTVLLITQQLSLAER--AHHILFL 229 (271)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTT-TTTSEEEEECSCHHHHTT--CSEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHh-hcCCEEEEEeCCHHHHHh--CCEEEEE
Confidence 3445568889999999999998732 2334444443321 236789999999877653 4555444
No 109
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.51 E-value=8.5e-07 Score=78.22 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=37.6
Q ss_pred cccccchhHHHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 26 DGLVGIASRMEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..++|.+..++.+...+... ......+.++||+|+|||++|+.++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l 512 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 35789999998887765421 1123479999999999999999999877
No 110
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.50 E-value=1.3e-07 Score=76.04 Aligned_cols=58 Identities=10% Similarity=0.054 Sum_probs=37.4
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+...-.+.+.+..++-+|++|+.-+ ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus 137 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~~~~~ 200 (359)
T 2yyz_A 137 GQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQ-ELGITSVYVTHDQAEAMTM 200 (359)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHCCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHHh
Confidence 44455578999999999999998732 1233333332210 1267899999998765543
No 111
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.49 E-value=1.8e-07 Score=74.88 Aligned_cols=58 Identities=10% Similarity=0.016 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+...-.+.+.+..++-+|++|+.-+ ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus 131 Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~-~~g~tii~vTHd~~~~~~~ 194 (348)
T 3d31_A 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK-KNKLTVLHITHDQTEARIM 194 (348)
T ss_dssp HHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHH-HTTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 34445578899999999999998732 1333333332210 1367899999997665443
No 112
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.49 E-value=4e-07 Score=69.56 Aligned_cols=63 Identities=13% Similarity=0.122 Sum_probs=41.3
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
.+...-.+.+.+..++-++++|+.-+ ...+..++..+. .+..||++||+...... ++..+.+.
T Consensus 149 Gq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~---~g~tviivtH~~~~~~~--~d~v~~l~ 217 (247)
T 2ff7_A 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC---KGRTVIIIAHRLSTVKN--ADRIIVME 217 (247)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH---TTSEEEEECSSGGGGTT--SSEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc---CCCEEEEEeCCHHHHHh--CCEEEEEE
Confidence 34445568888999999999998732 233444443332 36789999999877643 55555543
No 113
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=98.48 E-value=5.5e-07 Score=68.59 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=39.9
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+...-.+.+.+..++-++++|+.- ....+..++..+. .+..+|++||+.+.... ++..+.+
T Consensus 144 q~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~---~~~tvi~vtH~~~~~~~--~d~v~~l 210 (243)
T 1mv5_A 144 QRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM---KGRTTLVIAHRLSTIVD--ADKIYFI 210 (243)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH---TTSEEEEECCSHHHHHH--CSEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc---CCCEEEEEeCChHHHHh--CCEEEEE
Confidence 344556788888889999999762 3344444443332 26789999999876643 4555544
No 114
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=98.47 E-value=1.3e-06 Score=70.65 Aligned_cols=49 Identities=20% Similarity=0.143 Sum_probs=37.4
Q ss_pred cccccchhHHHHHHHHHh----------------------------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 26 DGLVGIASRMEKMNGYLE----------------------------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~----------------------------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..++|.+...+.|...+. ........+.++||+|+|||++|+.++..+.
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899888888876652 0112346799999999999999999998773
No 115
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.46 E-value=3.5e-07 Score=80.45 Aligned_cols=167 Identities=14% Similarity=0.135 Sum_probs=83.3
Q ss_pred ccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455 25 VDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR 93 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (216)
.....|-++..+.|...+... ....+.++++||+|+|||.+|+.+++.....| . .+. .
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f--~-~v~-~------- 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF--I-SIK-G------- 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE--E-ECC-H-------
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce--E-Eec-c-------
Confidence 445677888888887754321 12345789999999999999999998764321 1 111 0
Q ss_pred CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCHH----------------HHHHhhcCCCCC-
Q 039455 94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQLE----------------QLQALAGNHDWF- 156 (216)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~~----------------~~~~l~~~~~~~- 156 (216)
..++. .. -..+.......+..+-...+++|+||+++++- .+..++..+.-.
T Consensus 545 ------~~l~s----~~--vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~ 612 (806)
T 3cf2_A 545 ------PELLT----MW--FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp ------HHHHT----TT--CSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC
T ss_pred ------chhhc----cc--cchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC
Confidence 11111 11 11111223333444445679999999986430 123333222111
Q ss_pred -CCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcCCC-CCchhHhhhcc
Q 039455 157 -GFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSKGK-QPTDDRVELSK 214 (216)
Q Consensus 157 -~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~~~-~~~~~~~~l~~ 214 (216)
..+..+|.||..+..+.. + ..+..+.++..+.++..++|+.+..... ..+-++..|++
T Consensus 613 ~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~ 677 (806)
T 3cf2_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK 677 (806)
T ss_dssp SSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC--------
T ss_pred CCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHH
Confidence 123344445554433221 1 3467889988888888899887764433 23334555554
No 116
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.45 E-value=7.2e-07 Score=71.66 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=65.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCc-eEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEA-SSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWR 127 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (216)
+..++|+||+|+|||||++.+++.+...... +..+.+.......... . ...... ...........+...
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~-~--------~v~q~~-~~~~~~~~~~~La~a 192 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK-C--------LVNQRE-VHRDTLGFSEALRSA 192 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS-S--------EEEEEE-BTTTBSCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc-c--------ceeeee-eccccCCHHHHHHHH
Confidence 3699999999999999999999876543222 2222111100000000 0 000000 001112344578889
Q ss_pred hCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhh
Q 039455 128 LCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVL 172 (216)
Q Consensus 128 l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~ 172 (216)
+..+|-+|++|++...+.+..+.... ..|..+++|+|..+..
T Consensus 193 L~~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~~ 234 (356)
T 3jvv_A 193 LREDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSAA 234 (356)
T ss_dssp TTSCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSHH
T ss_pred hhhCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChHH
Confidence 99999999999998766555444322 2467799999987543
No 117
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.45 E-value=1.7e-07 Score=75.14 Aligned_cols=58 Identities=14% Similarity=0.182 Sum_probs=37.9
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+...-.+.+.+..++-+|++|+.- ....+..++..+.. ..+..+|++||+.+.+..+
T Consensus 144 Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~~~~~ 207 (353)
T 1oxx_K 144 AQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS-RLGVTLLVVSHDPADIFAI 207 (353)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHH-HHCCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh
Confidence 3445557899999999999999763 22344444333210 1267899999998765543
No 118
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.45 E-value=1.3e-07 Score=76.28 Aligned_cols=60 Identities=8% Similarity=-0.021 Sum_probs=38.5
Q ss_pred cchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 115 WDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 115 ~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+..+...-.+.+.+..++-+|++|+.-+ ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus 143 SGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~a~~~ 208 (372)
T 1v43_A 143 SGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ-KLKVTTIYVTHDQVEAMTM 208 (372)
T ss_dssp CSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHTCEEEEEESCHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh
Confidence 3344556678999999999999998732 1233333332210 1267899999998765443
No 119
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.44 E-value=3e-07 Score=74.26 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=36.7
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+...-.+.+.+..++-+|++|+.-+ ...+..++..+.. ..+..+|++||+.+.+..+
T Consensus 143 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~-~~g~tvi~vTHd~~~a~~~ 206 (372)
T 1g29_1 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQR-QLGVTTIYVTHDQVEAMTM 206 (372)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHH-HHTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHH-hcCCEEEEECCCHHHHHHh
Confidence 34445568888889999999998732 1233333332210 1267899999998765543
No 120
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.44 E-value=6.9e-07 Score=74.25 Aligned_cols=52 Identities=29% Similarity=0.320 Sum_probs=40.5
Q ss_pred ccccccchhHHHHHHHHHh---cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 25 VDGLVGIASRMEKMNGYLE---AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~---~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
...++|.+..++.+..++. .+......+.++||+|+|||+||+.++..+...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~ 90 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK 90 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTT
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCC
Confidence 4789999999887665543 332334679999999999999999999987543
No 121
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.43 E-value=6.1e-07 Score=65.06 Aligned_cols=24 Identities=46% Similarity=0.530 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.++|+|++|+|||||++.+++.+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998764
No 122
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.43 E-value=3e-07 Score=69.07 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=28.7
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
..+..++|.|++|+|||||++.++......-..+.|+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 34579999999999999999999976543333455553
No 123
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.41 E-value=1.1e-06 Score=73.52 Aligned_cols=46 Identities=20% Similarity=0.161 Sum_probs=39.1
Q ss_pred ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.+.++|+++.++.+...+..+ ..+.|+||+|+|||+||+.++....
T Consensus 21 ~~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 21 EKGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp HTTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred HhhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 355899999999888877654 5899999999999999999998764
No 124
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.41 E-value=8.2e-07 Score=68.32 Aligned_cols=61 Identities=13% Similarity=0.137 Sum_probs=39.3
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+...-.+.+.+..++-++++|+.-+ ...+..++..+. .+..+|++||+...... ++..+.+
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~---~~~tviivtH~~~~~~~--~d~i~~l 226 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR---KNRTLIIIAHRLSTISS--AESIILL 226 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT---TTSEEEEECSSGGGSTT--CSEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc---CCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 3444567788888889999998732 233444443332 25789999999876643 4555444
No 125
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.40 E-value=2e-06 Score=76.84 Aligned_cols=49 Identities=29% Similarity=0.331 Sum_probs=38.3
Q ss_pred ccccchhHHHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 27 GLVGIASRMEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 27 ~~vgR~~~~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
.++|.+..++.+...+... ......+.|+||+|+|||++|+.++.....
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~ 614 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 614 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4799999999887766521 111258999999999999999999987643
No 126
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=98.40 E-value=2.1e-07 Score=72.30 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=23.7
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.+.+++|.|++|+|||||++.+++.+.
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 457999999999999999999998543
No 127
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.39 E-value=2.2e-07 Score=79.58 Aligned_cols=63 Identities=10% Similarity=-0.027 Sum_probs=41.1
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+...-.+...+..++-+++||+.-+ ...+..++..+. ..+..||++||+.+.+..+ ++..+.+
T Consensus 226 e~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~--~~g~tvi~vtHdl~~~~~~-~drv~vl 294 (608)
T 3j16_B 226 ELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLL--APTKYVICVEHDLSVLDYL-SDFVCII 294 (608)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGG--TTTCEEEEECSCHHHHHHH-CSEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 3444567888888999999998742 233444554443 3467899999998776655 3343333
No 128
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.38 E-value=8.2e-07 Score=72.08 Aligned_cols=64 Identities=11% Similarity=0.131 Sum_probs=40.7
Q ss_pred cchhhhHHHHHHHhCCceEEEEEeCC----C--CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 115 WDVHKGINLIRWRLCRKRVLVVLDDV----D--QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 115 ~~~~~~~~~l~~~l~~~~~llvlDd~----~--~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+..+...-.+.+.+..++-+|++|+. | ....+..++..+ ..+..+|++||+.+.... ++..+-+
T Consensus 157 SGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~---~~~~tvi~vtHd~e~~~~--aDri~vl 226 (390)
T 3gd7_A 157 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA---FADCTVILCEARIEAMLE--CDQFLVI 226 (390)
T ss_dssp CHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT---TTTSCEEEECSSSGGGTT--CSEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH---hCCCEEEEEEcCHHHHHh--CCEEEEE
Confidence 33444555788888899999999966 2 223444444433 246789999998765543 4444433
No 129
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.38 E-value=3.7e-07 Score=77.29 Aligned_cols=55 Identities=15% Similarity=0.069 Sum_probs=38.0
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
+...-.+...+..++-+|+||+.-+. ..+..++..+. . +..||++||+.+++..+
T Consensus 143 e~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~--~-g~tii~vsHdl~~~~~~ 203 (538)
T 3ozx_A 143 GLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELL--K-NKYVIVVDHDLIVLDYL 203 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHC--T-TSEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHh--C-CCEEEEEEeChHHHHhh
Confidence 34455688888899999999987421 23444444443 2 68899999998776654
No 130
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.35 E-value=6.9e-07 Score=76.62 Aligned_cols=134 Identities=16% Similarity=0.088 Sum_probs=71.2
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCC------ceEeeccccccccccCchHHHH--------------HHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVREVSVTRGLVPLQE--------------QLLSEVL 107 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--------------~l~~~~~ 107 (216)
.+.+++|.|++|+|||||++.+++....... .+.++.--........+..... .++..+.
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~ 460 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLG 460 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence 4579999999999999999999986543211 1222211000000111111111 1111111
Q ss_pred hhc-----cccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccC
Q 039455 108 MER-----NLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHG 176 (216)
Q Consensus 108 ~~~-----~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~ 176 (216)
... ....+..+.....+..++..++-+|+||+.-+ ...+..++..+.. ..+..+|++||+...+..+
T Consensus 461 l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tvi~vsHd~~~~~~~- 538 (607)
T 3bk7_A 461 IIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME-KNEKTALVVEHDVLMIDYV- 538 (607)
T ss_dssp CTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HTTCEEEEECSCHHHHHHH-
T ss_pred CchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-
Confidence 100 01112223345568889999999999998732 1233333333210 2367899999998877665
Q ss_pred CcceEEe
Q 039455 177 VTNIYKV 183 (216)
Q Consensus 177 ~~~~~~l 183 (216)
++..+.+
T Consensus 539 adrv~vl 545 (607)
T 3bk7_A 539 SDRLIVF 545 (607)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 3444444
No 131
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.34 E-value=1.4e-07 Score=79.87 Aligned_cols=64 Identities=16% Similarity=0.054 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.+.....+...+..++-+|++|+.-+. ..+..++..+. ..+..||++||+.+++..+ ++..+.+
T Consensus 162 GekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~--~~g~tvi~vsHd~~~~~~~-~dri~vl 231 (538)
T 1yqt_A 162 GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS--EEGKSVLVVEHDLAVLDYL-SDIIHVV 231 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHHHHH-CSEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 344455688888899999999987321 23344443332 2368899999998876655 3444333
No 132
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.34 E-value=5.3e-07 Score=70.91 Aligned_cols=62 Identities=13% Similarity=0.123 Sum_probs=38.3
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.+...-.+.+.+..++-+|+||+.-+. ..+...+..+. .+.++|++||+...+.. ++..+.+
T Consensus 194 GqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~---~~~Tvi~itH~l~~~~~--aD~i~vl 261 (306)
T 3nh6_A 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC---ANRTTIVVAHRLSTVVN--ADQILVI 261 (306)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH---TTSEEEEECCSHHHHHT--CSEEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc---CCCEEEEEEcChHHHHc--CCEEEEE
Confidence 344455678888888889999987321 22333332221 35688999998877654 4444444
No 133
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.33 E-value=8.2e-07 Score=68.36 Aligned_cols=111 Identities=14% Similarity=0.162 Sum_probs=62.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee-cc-ccccccccCchHHHHHHHHHHHhhccccccchhhhHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL-AN-VREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLI 124 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 124 (216)
..+..++|+||+|+|||||++.+++.+...+...+++ .. ..... .....+ ........ +.......+
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~--~~~~~~--------v~q~~~gl-~~~~l~~~l 91 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF--KHKKSI--------VNQREVGE-DTKSFADAL 91 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC--CCSSSE--------EEEEEBTT-TBSCHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec--CCccee--------eeHHHhCC-CHHHHHHHH
Confidence 4468999999999999999999998765432222222 11 00000 000000 00000000 112235567
Q ss_pred HHHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchh
Q 039455 125 RWRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHV 171 (216)
Q Consensus 125 ~~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~ 171 (216)
...+..++-+|++|++...+....++... ..+..+++|+|+.+.
T Consensus 92 a~aL~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~~ 135 (261)
T 2eyu_A 92 RAALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNTA 135 (261)
T ss_dssp HHHHHHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSSH
T ss_pred HHHHhhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcchH
Confidence 77777788899999996554444433221 246778999998643
No 134
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.32 E-value=6.6e-07 Score=75.78 Aligned_cols=134 Identities=16% Similarity=0.105 Sum_probs=70.9
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCC------ceEeeccccccccccCchHHHHHH----------HHHHHhhcc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVREVSVTRGLVPLQEQL----------LSEVLMERN 111 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~ 111 (216)
.+.+++|.|++|+|||||++.+++....... .+.++.--........+....... ...+.....
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLG 390 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcC
Confidence 4579999999999999999999986543211 122221100000011111111111 011100000
Q ss_pred ---------ccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccC
Q 039455 112 ---------LIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHG 176 (216)
Q Consensus 112 ---------~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~ 176 (216)
...+..+.....+..++..++-+|++|+.-+ ...+..++..+.. ..+..||++||+.+++..+
T Consensus 391 l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~-~~g~tvi~vsHd~~~~~~~- 468 (538)
T 1yqt_A 391 IIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME-KNEKTALVVEHDVLMIDYV- 468 (538)
T ss_dssp CGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-HHTCEEEEECSCHHHHHHH-
T ss_pred ChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-
Confidence 0112223344568889999999999998732 2333333332210 1367899999998877655
Q ss_pred CcceEEe
Q 039455 177 VTNIYKV 183 (216)
Q Consensus 177 ~~~~~~l 183 (216)
++..+.+
T Consensus 469 ~drv~vl 475 (538)
T 1yqt_A 469 SDRLMVF 475 (538)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 3444444
No 135
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.29 E-value=2.1e-07 Score=82.40 Aligned_cols=154 Identities=13% Similarity=0.131 Sum_probs=86.1
Q ss_pred ccccccchhHHHHHHHHHhcC-----------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeecccccccccc
Q 039455 25 VDGLVGIASRMEKMNGYLEAG-----------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTR 93 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~-----------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (216)
.....|-++..+.|...+... ......++++||+|+|||+||+.+++.+...+-. +. ..... .
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~---v~-~~~l~--~ 549 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS---IK-GPELL--T 549 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC---CC-CSSST--T
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE---Ee-chHhh--h
Confidence 456788888888888766421 1235679999999999999999999987533211 11 11100 0
Q ss_pred CchHHHHHHHHHHHhhccccccchhhhHHHHHHHhCCceEEEEEeCCCCH----------------HHHHHhhcCCCCC-
Q 039455 94 GLVPLQEQLLSEVLMERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL----------------EQLQALAGNHDWF- 156 (216)
Q Consensus 94 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~----------------~~~~~l~~~~~~~- 156 (216)
.+ ...........+...-...+.+|+||+++.. ..+..++..+...
T Consensus 550 ~~-----------------~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~ 612 (806)
T 1ypw_A 550 MW-----------------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS 612 (806)
T ss_dssp CC-----------------TTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---
T ss_pred hh-----------------cCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc
Confidence 00 0000001111122222234578999998542 1234555554321
Q ss_pred -CCCcEEEEEeCCchhhhc--c---CCcceEEecCCChHHHHHHHhhhhcC
Q 039455 157 -GFGSRIIITTRDEHVLKG--H---GVTNIYKVRGLDYVEALQLFHLKVSK 201 (216)
Q Consensus 157 -~~~~~il~tsr~~~~~~~--~---~~~~~~~l~~l~~~~~~~ll~~~~~~ 201 (216)
..+..||.||..++.... . .....+.+++.+.++..++++.+...
T Consensus 613 ~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 613 TKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp ---CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred ccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 234456667765433221 1 23467888999999999999887643
No 136
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.26 E-value=6.3e-07 Score=75.82 Aligned_cols=64 Identities=14% Similarity=-0.001 Sum_probs=40.6
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+.....+..++..++-+|++|+.-+. ..+..++..+.. ..+..||++||+.+.+..+ ++..+.+
T Consensus 390 q~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~-~~g~tvi~vsHdl~~~~~~-aDri~vl 459 (538)
T 3ozx_A 390 ELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR-ERKAVTFIIDHDLSIHDYI-ADRIIVF 459 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-HTTCEEEEECSCHHHHHHH-CSEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-CCEEEEE
Confidence 33455688889999999999987321 233333332210 2367899999998877665 4444444
No 137
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.26 E-value=2.7e-07 Score=79.19 Aligned_cols=57 Identities=16% Similarity=0.104 Sum_probs=38.4
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhcc
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGH 175 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~ 175 (216)
.+...-.+...+..++-+|+||+.-+. ..+..++..+. ..+..||++||+..++..+
T Consensus 232 GekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~--~~g~tvIivsHdl~~~~~~ 294 (607)
T 3bk7_A 232 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLA--NEGKAVLVVEHDLAVLDYL 294 (607)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHH--hcCCEEEEEecChHHHHhh
Confidence 334455688888899999999987321 23344443332 2368899999998776654
No 138
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.25 E-value=4.1e-06 Score=66.01 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=39.2
Q ss_pred ccccccc----hhHHHHHHHHHhcCCC-CeeEEEEEecCCCcHHHHHHHHHHHhc-CCCCceEee
Q 039455 25 VDGLVGI----ASRMEKMNGYLEAGLD-DVRFIGICGMGGIGKTTLAKVLYNTLK-DQFEASSFL 83 (216)
Q Consensus 25 ~~~~vgR----~~~~~~l~~~l~~~~~-~~~~i~I~G~~GiGKTtL~~~~~~~~~-~~~~~~~~~ 83 (216)
-+.|++. ...++.+..++..... ....+.|+|++|+|||+|+..++..+. .....+.++
T Consensus 123 fd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 123 LSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp GGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred HhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 3456643 3344455666664322 257899999999999999999999776 443344444
No 139
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.24 E-value=4.7e-06 Score=70.48 Aligned_cols=124 Identities=14% Similarity=0.039 Sum_probs=65.9
Q ss_pred HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHH------HHHHHhh--
Q 039455 38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQL------LSEVLME-- 109 (216)
Q Consensus 38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~~~~~~-- 109 (216)
+...|..+-..+.+++|.|++|+|||||++.++......-..+.++. ... ....+.... ...+...
T Consensus 270 ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~-~ee-----~~~~l~~~~~~~g~~~~~~~~~g~ 343 (525)
T 1tf7_A 270 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFA-YEE-----SRAQLLRNAYSWGMDFEEMERQNL 343 (525)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE-SSS-----CHHHHHHHHHTTSCCHHHHHHTTS
T ss_pred HHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE-EeC-----CHHHHHHHHHHcCCCHHHHHhCCC
Confidence 44444444345689999999999999999999986654322234442 111 111111111 0000000
Q ss_pred cc-----ccccch-hhhHHHHHHHhCCceEEEEEe-----CCC-----CHHHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455 110 RN-----LIIWDV-HKGINLIRWRLCRKRVLVVLD-----DVD-----QLEQLQALAGNHDWFGFGSRIIITTRDE 169 (216)
Q Consensus 110 ~~-----~~~~~~-~~~~~~l~~~l~~~~~llvlD-----d~~-----~~~~~~~l~~~~~~~~~~~~il~tsr~~ 169 (216)
.. ....+. +.....+..++..++-+||+| |.. ....+..++..+. ..+..+|++||+.
T Consensus 344 ~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilDp~~~Ld~~~~~~~~~~~i~~ll~~l~--~~g~tvilvsh~~ 417 (525)
T 1tf7_A 344 LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAK--QEEITGLFTNTSD 417 (525)
T ss_dssp EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHH--HTTCEEEEEEECS
T ss_pred EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEcChHHHHhhCChHHHHHHHHHHHHHHH--hCCCEEEEEECcc
Confidence 00 001122 233344666777889999999 222 2223333433332 3478899999986
No 140
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.21 E-value=1.6e-06 Score=74.35 Aligned_cols=133 Identities=14% Similarity=0.061 Sum_probs=70.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcCCCC------ceEeeccccccccccCc--------------hHHHHHHHHHHHhh
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLKDQFE------ASSFLANVREVSVTRGL--------------VPLQEQLLSEVLME 109 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~ 109 (216)
.+++|.|++|+|||||++.+++....... .+.++.-.......... ......++..+...
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~ 458 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID 458 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence 67999999999999999999985543211 11121100000000000 01111222222111
Q ss_pred -----ccccccchhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCc
Q 039455 110 -----RNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVT 178 (216)
Q Consensus 110 -----~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~ 178 (216)
.....+..+.....+..++..++-+|++|+.-+. ..+..++..+.. ..+..||++||+.+.+..+ ++
T Consensus 459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~-~~g~tviivtHdl~~~~~~-aD 536 (608)
T 3j16_B 459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL-HNKKTAFIVEHDFIMATYL-AD 536 (608)
T ss_dssp TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHH-HHTCEEEEECSCHHHHHHH-CS
T ss_pred hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh-CC
Confidence 1112223344455789999999999999987321 233333332210 2367899999998877665 44
Q ss_pred ceEEec
Q 039455 179 NIYKVR 184 (216)
Q Consensus 179 ~~~~l~ 184 (216)
..+.+.
T Consensus 537 rvivl~ 542 (608)
T 3j16_B 537 KVIVFE 542 (608)
T ss_dssp EEEECE
T ss_pred EEEEEe
Confidence 444443
No 141
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.21 E-value=4.5e-06 Score=67.48 Aligned_cols=111 Identities=14% Similarity=0.123 Sum_probs=63.2
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCC-CCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIR 125 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 125 (216)
..+..++|+|++|+|||||++.+++.+... ...+.++..... ...... + .+..+.... .+.......+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e----~~~~~~---~--~~v~Q~~~g-~~~~~~~~~l~ 203 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE----YVFKHK---K--SIVNQREVG-EDTKSFADALR 203 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC----SCCCCS---S--SEEEEEEBT-TTBSCSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh----hhhccC---c--eEEEeeecC-CCHHHHHHHHH
Confidence 345799999999999999999999876543 222223221000 000000 0 000000000 01123356778
Q ss_pred HHhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCch
Q 039455 126 WRLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEH 170 (216)
Q Consensus 126 ~~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~ 170 (216)
..+..++-+|++|++...+.+...+... ..|..++.|+|..+
T Consensus 204 ~~L~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~~ 245 (372)
T 2ewv_A 204 AALREDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT 245 (372)
T ss_dssp HHTTSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCCS
T ss_pred HHhhhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcch
Confidence 8888888899999997665554443322 24567888888754
No 142
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.18 E-value=1.9e-06 Score=68.67 Aligned_cols=53 Identities=30% Similarity=0.481 Sum_probs=41.6
Q ss_pred CCcccccccchhHHHHHHHHHhcC---CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAG---LDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~---~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
|..-..++|.+..++.+...+... +.....++|+||+|+|||||++.+++.+.
T Consensus 21 ~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 21 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 445567899998888887776532 22346799999999999999999999874
No 143
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.18 E-value=9.5e-07 Score=70.32 Aligned_cols=106 Identities=13% Similarity=0.119 Sum_probs=63.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhcccccc--chhhhHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIW--DVHKGINLIRW 126 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~l~~ 126 (216)
+..++|+|++|+|||||++.+++.+... ...+.+......... ... ...... ........+..
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~-~~~-------------~~i~~~~ggg~~~r~~la~ 235 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFK-HHK-------------NYTQLFFGGNITSADCLKS 235 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCS-SCS-------------SEEEEECBTTBCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccccc-cch-------------hEEEEEeCCChhHHHHHHH
Confidence 3689999999999999999999876543 333333321111000 000 000000 23445667888
Q ss_pred HhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCchhh
Q 039455 127 RLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEHVL 172 (216)
Q Consensus 127 ~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~ 172 (216)
.+..++-+|++|++.+.+.++ ++..+. ..+..+++|+|..+..
T Consensus 236 aL~~~p~ilildE~~~~e~~~-~l~~~~--~g~~tvi~t~H~~~~~ 278 (330)
T 2pt7_A 236 CLRMRPDRIILGELRSSEAYD-FYNVLC--SGHKGTLTTLHAGSSE 278 (330)
T ss_dssp HTTSCCSEEEECCCCSTHHHH-HHHHHH--TTCCCEEEEEECSSHH
T ss_pred HhhhCCCEEEEcCCChHHHHH-HHHHHh--cCCCEEEEEEcccHHH
Confidence 888899999999998754433 333322 1223588899987643
No 144
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.16 E-value=7.2e-06 Score=73.48 Aligned_cols=129 Identities=19% Similarity=0.232 Sum_probs=69.8
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHH-HhcCCCC-----ceEeec-cccccccccCc-----------hHHHHHHHHHHHh-
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYN-TLKDQFE-----ASSFLA-NVREVSVTRGL-----------VPLQEQLLSEVLM- 108 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~-~~~~~~~-----~~~~~~-~~~~~~~~~~~-----------~~~~~~l~~~~~~- 108 (216)
.+..++|+|++|+|||||++.+++ .+. .++ ...++. ........... ......++..+.-
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~i~-g~~~~~~~~~~~v~q~~~~~~~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~ 538 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQVD-GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEFGFT 538 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTCST-TCCCTTTSCEEETTCCCCCCCTTSBHHHHHHTTCSSCHHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC-CCccccceeEEEEcccccccccCCcHHHHHHHhhcCHHHHHHHHHHHcCCC
Confidence 357899999999999999999984 221 111 111221 00000000010 1112223332221
Q ss_pred -----hccccccchhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCC
Q 039455 109 -----ERNLIIWDVHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGV 177 (216)
Q Consensus 109 -----~~~~~~~~~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~ 177 (216)
......+..+...-.+...+..++-+|+||+.-+ ...+..++.. .+..+|++||+..+...+ +
T Consensus 539 ~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~-----~g~tvIivSHdl~~l~~~-a 612 (986)
T 2iw3_A 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT-----CGITSITISHDSVFLDNV-C 612 (986)
T ss_dssp HHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH-----SCSEEEEECSCHHHHHHH-C
T ss_pred hhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh-----CCCEEEEEECCHHHHHHh-C
Confidence 1111223344455568888889999999998732 2334444433 367899999998776654 3
Q ss_pred cceEEe
Q 039455 178 TNIYKV 183 (216)
Q Consensus 178 ~~~~~l 183 (216)
++.+.+
T Consensus 613 drii~L 618 (986)
T 2iw3_A 613 EYIINY 618 (986)
T ss_dssp SEEEEE
T ss_pred CEEEEE
Confidence 333333
No 145
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.16 E-value=9.1e-06 Score=69.57 Aligned_cols=62 Identities=15% Similarity=0.204 Sum_probs=39.5
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
+...-.+.+.+-.++-++++||.-+ ...+.+.+..+. .+..+|++||+.+.... +++.+.++
T Consensus 485 q~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~~~~~~~--~d~i~~l~ 552 (582)
T 3b5x_A 485 QRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ---KNKTVLVIAHRLSTIEQ--ADEILVVD 552 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc---CCCEEEEEecCHHHHHh--CCEEEEEE
Confidence 3444467888888999999998732 233444443332 36789999998876653 45555443
No 146
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.09 E-value=1.5e-05 Score=61.16 Aligned_cols=37 Identities=22% Similarity=0.307 Sum_probs=28.2
Q ss_pred HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.+..|+....+....++++||+|+|||.++..+++..
T Consensus 92 ~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 92 VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 3455555432445689999999999999999999854
No 147
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.07 E-value=5.6e-06 Score=66.35 Aligned_cols=50 Identities=22% Similarity=0.196 Sum_probs=37.6
Q ss_pred HHHHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 35 MEKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 35 ~~~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
...|...|. .+-+.+.++.|.|++|+|||||+..++..+...-..+.|++
T Consensus 46 ~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 46 SLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345666665 44455689999999999999999999987655444566765
No 148
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.06 E-value=4.8e-06 Score=61.73 Aligned_cols=41 Identities=22% Similarity=0.314 Sum_probs=30.8
Q ss_pred HHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 34 RMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 34 ~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
-++.|.+.+......+..++|.|++|+|||||++.++..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34444444433235678999999999999999999998765
No 149
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.06 E-value=1.1e-05 Score=59.51 Aligned_cols=46 Identities=30% Similarity=0.372 Sum_probs=36.2
Q ss_pred cchhHHHHHHHHHhcC-CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 30 GIASRMEKMNGYLEAG-LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 30 gR~~~~~~l~~~l~~~-~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
.|++.++.|...+... ...+.+++|+|++|+||||+++.+...+..
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp CHHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4666777777766543 345689999999999999999999987643
No 150
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.05 E-value=1.7e-05 Score=61.40 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=24.2
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
.+.+++|.|++|+|||||+..++..+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~~ 56 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIAG 56 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 4579999999999999999999976543
No 151
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.02 E-value=6.4e-06 Score=70.44 Aligned_cols=63 Identities=11% Similarity=0.079 Sum_probs=39.5
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
.+...-.+.+.+-.++-++++||.-+. ..+...+..+ ..+.++|++||+.+.... +++.+.++
T Consensus 481 Gq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~---~~~~t~i~itH~l~~~~~--~d~i~~l~ 549 (578)
T 4a82_A 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL---SKDRTTLIVAHRLSTITH--ADKIVVIE 549 (578)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH---TTTSEEEEECSSGGGTTT--CSEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHHc--CCEEEEEE
Confidence 344455678888888899999988321 2333333222 235788999998877654 55555553
No 152
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.00 E-value=2.2e-05 Score=59.17 Aligned_cols=48 Identities=17% Similarity=0.241 Sum_probs=33.3
Q ss_pred HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC------CCCceEeec
Q 039455 37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLA 84 (216)
Q Consensus 37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~------~~~~~~~~~ 84 (216)
.|..++..+-+.+.++.|.|++|+|||||+..++..... ....+.|+.
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~ 65 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID 65 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence 344445444345689999999999999999999985322 124566664
No 153
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.99 E-value=5e-06 Score=71.40 Aligned_cols=62 Identities=18% Similarity=0.193 Sum_probs=39.0
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
+...-.+.+.+-.++-++++|+.-+. ..+...+..+ ..+.++|++||+.+.... +++.+.++
T Consensus 496 q~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~---~~~~t~i~itH~l~~~~~--~d~i~~l~ 563 (598)
T 3qf4_B 496 QRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL---MEGKTSIIIAHRLNTIKN--ADLIIVLR 563 (598)
T ss_dssp HHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHH---HTTSEEEEESCCTTHHHH--CSEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHHc--CCEEEEEE
Confidence 33444678888888889999988321 2233333222 236789999998876654 45555543
No 154
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.98 E-value=8.8e-06 Score=69.70 Aligned_cols=62 Identities=18% Similarity=0.100 Sum_probs=39.4
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.+...-.+.+.+-.++-++++||.-+. ..+.+.+..+ ..+.++|++||+.+.... +++.+.+
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~---~~~~tvi~itH~l~~~~~--~d~i~vl 550 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRY---TKGCTTFIITQKIPTALL--ADKILVL 550 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHH---STTCEEEEEESCHHHHTT--SSEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHh---CCCCEEEEEecChHHHHh--CCEEEEE
Confidence 344455688888888999999988422 2333333222 246889999998876653 4555544
No 155
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.98 E-value=1.1e-05 Score=58.88 Aligned_cols=114 Identities=18% Similarity=0.035 Sum_probs=59.9
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHH-------hhccccc------
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVL-------MERNLII------ 114 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~------ 114 (216)
....|.|++.+|.||||+|-.++-+...+-..+.++..... ....-...++..+. ....+..
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg-----~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~ 101 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKG-----TWPNGERNLLEPHGVEFQVMATGFTWETQNREAD 101 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCC-----SSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCC-----CCCccHHHHHHhCCcEEEEcccccccCCCCcHHH
Confidence 34678888888899999999998876655444444421111 01111112222220 0000000
Q ss_pred -cchhhhHHHHHHHhCCc-eEEEEEeCCC--------CHHHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455 115 -WDVHKGINLIRWRLCRK-RVLVVLDDVD--------QLEQLQALAGNHDWFGFGSRIIITTRDE 169 (216)
Q Consensus 115 -~~~~~~~~~l~~~l~~~-~~llvlDd~~--------~~~~~~~l~~~~~~~~~~~~il~tsr~~ 169 (216)
...........+.+.+. --+||||++. ..+++..++..- .....+|+|+|..
T Consensus 102 ~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R---p~~~~vIlTGr~a 163 (196)
T 1g5t_A 102 TAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR---PGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS---CTTCEEEEECSSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC---cCCCEEEEECCCC
Confidence 01112233345555544 4599999882 334444444332 3567899999986
No 156
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.95 E-value=5.5e-05 Score=59.45 Aligned_cols=52 Identities=23% Similarity=0.186 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHhcC------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455 32 ASRMEKMNGYLEAG------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 83 (216)
Q Consensus 32 ~~~~~~l~~~l~~~------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~ 83 (216)
....++|.+.+... ...+.+++|+|++|+||||++..++..+......+.++
T Consensus 81 ~~~~~~l~~~l~~~~~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 81 ESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp HHHHHHHHHHTCSCCCCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhCCCCCCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 34444555555422 13467999999999999999999999776543444444
No 157
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.95 E-value=7e-06 Score=65.14 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=39.7
Q ss_pred ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
...++|++..++.+...+..+ ..+.++|++|+|||+|++.++.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~ 72 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDL 72 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred ccceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 356899999999988877653 57999999999999999999987643
No 158
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.94 E-value=9.6e-06 Score=69.41 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=38.9
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
+...-.+.+.+-.++-++++|+.-+. ..+.+.+..+. .+..+|++||+.+.... +++.+.++
T Consensus 485 q~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~---~~~tvi~itH~~~~~~~--~d~i~~l~ 552 (582)
T 3b60_A 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ---KNRTSLVIAHRLSTIEQ--ADEIVVVE 552 (582)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHH---TTSEEEEECSCGGGTTT--CSEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh---CCCEEEEEeccHHHHHh--CCEEEEEE
Confidence 34444577777788889999988321 23333333322 36789999998876553 55555543
No 159
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.94 E-value=9.7e-06 Score=63.82 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=22.2
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.++.+.|+|++|+|||+|+.+++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3467899999999999999999876
No 160
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.92 E-value=1e-05 Score=70.32 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=41.5
Q ss_pred hhhHHHHHHHhCCceE--EEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 118 HKGINLIRWRLCRKRV--LVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~--llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+.....+.+.+..++- +|++|+.- ....+..++..+. ..+..||++||+.++... ++..+.+
T Consensus 207 e~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~--~~g~tvi~vtHd~~~~~~--~d~ii~l 276 (670)
T 3ux8_A 207 EAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMR--DLGNTLIVVEHDEDTMLA--ADYLIDI 276 (670)
T ss_dssp HHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHH--HTTCEEEEECCCHHHHHH--CSEEEEE
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHH--HcCCEEEEEeCCHHHHhh--CCEEEEe
Confidence 3445567888877766 99999773 3344555544443 246889999999887553 5666666
No 161
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.91 E-value=2e-05 Score=70.70 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=40.7
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCC------CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVD------QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~------~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.+...-.+...+..++-+|+||+.- +...+..++..+ +..||++||+.++...+ +++.+.+
T Consensus 905 GQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~-----g~tVIiISHD~e~v~~l-~DrVivL 971 (986)
T 2iw3_A 905 GQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-----EGGVIIITHSAEFTKNL-TEEVWAV 971 (986)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC-----SSEEEEECSCHHHHTTT-CCEEECC
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh-----CCEEEEEECCHHHHHHh-CCEEEEE
Confidence 3444556888889999999999762 223344444433 35799999998887665 4555544
No 162
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.90 E-value=1.1e-05 Score=69.28 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=24.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+.+..++|+|++|+|||||++.+++.+.
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 3467999999999999999999987543
No 163
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.89 E-value=2e-05 Score=70.66 Aligned_cols=24 Identities=29% Similarity=0.159 Sum_probs=21.5
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLY 70 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~ 70 (216)
..+.+++|+||+|+||||+++.++
T Consensus 660 ~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 660 DKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp TTBCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 346899999999999999999984
No 164
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.87 E-value=1.7e-06 Score=78.26 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=20.1
Q ss_pred eeEEEEEecCCCcHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVL 69 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~ 69 (216)
+.+++|+||+|+|||||++.+
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHH
Confidence 589999999999999999999
No 165
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.86 E-value=0.00027 Score=55.89 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=28.2
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 83 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~ 83 (216)
.+.+++|+|++|+||||++..++..+......+.++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 467999999999999999999998766543334443
No 166
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.86 E-value=1.6e-05 Score=63.91 Aligned_cols=48 Identities=23% Similarity=0.127 Sum_probs=38.0
Q ss_pred ccccchhHHHHHHHHHh-------------cCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 27 GLVGIASRMEKMNGYLE-------------AGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 27 ~~vgR~~~~~~l~~~l~-------------~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.++|.+..++.+...+. ........++++||+|+|||++|+.++..+.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 37999999998887762 1112346899999999999999999998763
No 167
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=97.84 E-value=0.00014 Score=58.65 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=37.8
Q ss_pred ccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 25 VDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
...++|.+..+..+...+..-......+.|+|++|+||+++++.+.....
T Consensus 128 ~~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~ 177 (368)
T 3dzd_A 128 EIEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSG 177 (368)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcc
Confidence 35689999888888776553323345688999999999999998876543
No 168
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.83 E-value=2.1e-05 Score=58.95 Aligned_cols=113 Identities=13% Similarity=-0.010 Sum_probs=57.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhh-ccccccchhhhHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLME-RNLIIWDVHKGINLIR 125 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~l~ 125 (216)
..+..++++|+.|+||||++..++.++..+...+..+.-..+. . ... .++..+... ..............+.
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~--r-~~~----~i~srlG~~~~~~~~~~~~~i~~~i~ 82 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDT--R-SIR----NIQSRTGTSLPSVEVESAPEILNYIM 82 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCG--G-GCS----SCCCCCCCSSCCEEESSTHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCc--h-HHH----HHHHhcCCCccccccCCHHHHHHHHH
Confidence 3468999999999999999999998776554334433211100 0 000 111111000 0011112223333344
Q ss_pred HHhCC-ceEEEEEeCCCCH--HHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455 126 WRLCR-KRVLVVLDDVDQL--EQLQALAGNHDWFGFGSRIIITTRDE 169 (216)
Q Consensus 126 ~~l~~-~~~llvlDd~~~~--~~~~~l~~~~~~~~~~~~il~tsr~~ 169 (216)
+.+.+ +.-+|++|++... +.++.+. .+. ..+..++++.+..
T Consensus 83 ~~~~~~~~dvViIDEaQ~l~~~~ve~l~-~L~--~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 83 SNSFNDETKVIGIDEVQFFDDRICEVAN-ILA--ENGFVVIISGLDK 126 (223)
T ss_dssp STTSCTTCCEEEECSGGGSCTHHHHHHH-HHH--HTTCEEEEECCSB
T ss_pred HHhhCCCCCEEEEecCccCcHHHHHHHH-HHH--hCCCeEEEEeccc
Confidence 43333 3559999998633 3333222 111 1267899999954
No 169
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.83 E-value=1.1e-05 Score=58.68 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=22.8
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.+.+++|+|++|+|||||++.++..
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999999875
No 170
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.82 E-value=8.6e-05 Score=59.31 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC------CCCceEeec
Q 039455 37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD------QFEASSFLA 84 (216)
Q Consensus 37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~------~~~~~~~~~ 84 (216)
.|...|..+-+.+.++.|+|++|+|||+|+..++..... .-..+.|++
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 344445444456789999999999999999999986432 224566765
No 171
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.82 E-value=3.4e-05 Score=61.81 Aligned_cols=50 Identities=26% Similarity=0.245 Sum_probs=36.8
Q ss_pred HHHHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 35 MEKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 35 ~~~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
...|...|. .+-+.+.++.|.|++|+|||||+..++......-..+.|++
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344555555 44345689999999999999999999976655445667775
No 172
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.82 E-value=2.8e-05 Score=55.10 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=24.7
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..+.+++|.|++|+|||||++.+++.+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 456899999999999999999999976
No 173
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.81 E-value=7.4e-05 Score=58.67 Aligned_cols=47 Identities=17% Similarity=0.167 Sum_probs=34.0
Q ss_pred HHHHHHh----cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC--CCceEeec
Q 039455 37 KMNGYLE----AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ--FEASSFLA 84 (216)
Q Consensus 37 ~l~~~l~----~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~--~~~~~~~~ 84 (216)
.|...|. .+-+.+ ++.|.|++|+|||||+.+++...... -..+.|++
T Consensus 13 ~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 13 MMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp HHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred HHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 4445555 444445 79999999999999999998766543 34577776
No 174
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.81 E-value=1.3e-05 Score=59.01 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=23.3
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.+.+++|+||+|+|||||++.+++..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 35799999999999999999999864
No 175
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.81 E-value=6.3e-06 Score=73.61 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=22.2
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
+.+.+++|+||+|+|||||++.++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 3468999999999999999999874
No 176
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.81 E-value=4.2e-05 Score=62.53 Aligned_cols=75 Identities=19% Similarity=0.131 Sum_probs=44.8
Q ss_pred HHHHHhCCce--EEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe-----------
Q 039455 123 LIRWRLCRKR--VLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV----------- 183 (216)
Q Consensus 123 ~l~~~l~~~~--~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l----------- 183 (216)
.+...+..++ -+|+|||+.+. ..+..++..+. .+..||++||+.+++.. ++..+.+
T Consensus 305 ~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~---~~~~vi~itH~~~~~~~--~d~i~~l~k~~~~G~~~~ 379 (415)
T 4aby_A 305 MLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA---DTRQVLVVTHLAQIAAR--AHHHYKVEKQVEDGRTVS 379 (415)
T ss_dssp HHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT---TTSEEEEECSCHHHHTT--CSEEEEEEEEEETTEEEE
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh---CCCEEEEEeCcHHHHhh--cCeEEEEEEeccCCceEE
Confidence 3555555566 89999998532 33444444433 37889999999887654 3444443
Q ss_pred --cCCChHHHHHHHhhhhcCC
Q 039455 184 --RGLDYVEALQLFHLKVSKG 202 (216)
Q Consensus 184 --~~l~~~~~~~ll~~~~~~~ 202 (216)
..++.++..+=+.+...+.
T Consensus 380 ~~~~l~~~~~~~ei~~~~~g~ 400 (415)
T 4aby_A 380 HVRLLTGDERLEEIARMLSGN 400 (415)
T ss_dssp EEEECCSHHHHHHHHHHHHSS
T ss_pred EEEECCchhhHHHHHHHhcCC
Confidence 4466655554444454443
No 177
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.78 E-value=1.5e-05 Score=57.67 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=23.7
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.+..++|+||+|+|||||++.+.....
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 357999999999999999999998653
No 178
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.77 E-value=2.1e-05 Score=57.86 Aligned_cols=28 Identities=36% Similarity=0.421 Sum_probs=25.1
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+.+++|+|++|+||||+++.++..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999998775
No 179
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.77 E-value=4.5e-05 Score=61.12 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=29.3
Q ss_pred HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
|...|..+-+.+.++.|+|++|+|||||+..++..+.
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~ 156 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 156 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4444544445678999999999999999999998763
No 180
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.77 E-value=1.7e-05 Score=56.99 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..|+|+|++|+||||+++.++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6899999999999999999998764
No 181
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.76 E-value=9.3e-05 Score=58.61 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=33.2
Q ss_pred HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC------CCceEeec
Q 039455 38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ------FEASSFLA 84 (216)
Q Consensus 38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~------~~~~~~~~ 84 (216)
|...|..+-+.+.++.|+|++|+|||+|+..++...... -..+.|++
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 444443333456799999999999999999999865332 24566765
No 182
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.76 E-value=6.6e-06 Score=72.26 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=22.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
+.+++|+||+|+|||||++.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 579999999999999999999874
No 183
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.76 E-value=2.2e-05 Score=58.06 Aligned_cols=27 Identities=48% Similarity=0.516 Sum_probs=24.1
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.+.+++|+|++|+|||||++.+++.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457999999999999999999998764
No 184
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.75 E-value=1.7e-05 Score=58.61 Aligned_cols=27 Identities=22% Similarity=0.412 Sum_probs=23.7
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..+.+++|.||+|+|||||++.+++.+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345799999999999999999999865
No 185
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.74 E-value=7.5e-05 Score=69.59 Aligned_cols=28 Identities=21% Similarity=0.430 Sum_probs=24.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+.+..++|+|++|+|||||++.+.+.+.
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 3467999999999999999999987543
No 186
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.74 E-value=2e-05 Score=57.92 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=23.7
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.+..++|+|++|+|||||++.+++.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999999999876
No 187
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.74 E-value=4.5e-05 Score=60.50 Aligned_cols=36 Identities=31% Similarity=0.269 Sum_probs=28.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEe
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF 82 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~ 82 (216)
..+.+++|+|++|+||||+++.+++.+......+.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l 162 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVI 162 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 357899999999999999999999876654333333
No 188
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.73 E-value=1.9e-05 Score=58.50 Aligned_cols=27 Identities=22% Similarity=0.426 Sum_probs=24.0
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.+.+++|+||+|+|||||++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 467999999999999999999998754
No 189
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.73 E-value=1.4e-05 Score=58.05 Aligned_cols=25 Identities=44% Similarity=0.567 Sum_probs=22.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.+++|+||+|+|||||++.+.+.+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5789999999999999999998764
No 190
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.72 E-value=3e-05 Score=55.55 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=23.8
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..+..++|+|++|+||||+++.++..+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 345799999999999999999998865
No 191
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.72 E-value=2e-05 Score=58.91 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=24.4
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+.+..++|+||+|+|||||++.+++...
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4568999999999999999999998764
No 192
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=97.71 E-value=0.00021 Score=58.02 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=37.2
Q ss_pred cccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 26 DGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..++|.+..++.+.+.+..-......+.|+|++|+|||++|+.+....
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s 184 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLS 184 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred hhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhc
Confidence 357899989998888766433334567999999999999999887653
No 193
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.71 E-value=2.8e-05 Score=61.94 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=37.1
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+..-..++|.+...+.+....... ....+.|+|++|+|||+||+.++....
T Consensus 20 ~~~f~~i~G~~~~~~~l~~~~~~~--~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 20 VFPFSAIVGQEDMKLALLLTAVDP--GIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHCG--GGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCchhccChHHHHHHHHHHhhCC--CCceEEEECCCCccHHHHHHHHHHhCc
Confidence 344567999998666654443322 224599999999999999999998664
No 194
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.71 E-value=0.0003 Score=52.41 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.7
Q ss_pred CCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 46 LDDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 46 ~~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..+.++|+|.||+|+||||.++.++.++
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999875
No 195
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.70 E-value=1.8e-05 Score=56.54 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=22.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..|+|+|++|+||||+++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999998753
No 196
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.69 E-value=0.00013 Score=57.05 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=28.0
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcC-CCCceEee
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFL 83 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~-~~~~~~~~ 83 (216)
.+.+++++|++|+||||++..++..+.. ....+.++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv 140 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFI 140 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4679999999999999999999987763 32234444
No 197
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.69 E-value=1e-05 Score=71.41 Aligned_cols=26 Identities=23% Similarity=0.132 Sum_probs=23.1
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
+.+.+++|+||+|+|||||++.++.-
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 45679999999999999999999873
No 198
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.69 E-value=1.9e-05 Score=58.04 Aligned_cols=26 Identities=35% Similarity=0.491 Sum_probs=22.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+..++|+||+|+|||||++.+...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46899999999999999999988653
No 199
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.68 E-value=6.9e-05 Score=58.43 Aligned_cols=30 Identities=30% Similarity=0.333 Sum_probs=25.7
Q ss_pred CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 46 LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 46 ~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
...+.+|+|.|++|+|||||++.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 455789999999999999999999886653
No 200
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.68 E-value=1.7e-05 Score=57.69 Aligned_cols=26 Identities=46% Similarity=0.606 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
+.|+|+||+|+|||||++.+..+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 46899999999999999999876533
No 201
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.67 E-value=4.5e-05 Score=59.89 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=25.5
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
.+.+++|+|++|+||||+++.++..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999999876654
No 202
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.67 E-value=4.2e-05 Score=60.01 Aligned_cols=29 Identities=38% Similarity=0.415 Sum_probs=25.4
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
.+.+++|+|++|+||||+++.+++.+...
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 127 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 127 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 46799999999999999999999876543
No 203
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.67 E-value=1.2e-05 Score=68.03 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=26.1
Q ss_pred CCeeEEEEEecCCCcHHHHHHHH--HHHhcCCCCceEeec
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVL--YNTLKDQFEASSFLA 84 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~--~~~~~~~~~~~~~~~ 84 (216)
..+.+++|.|++|+|||||++.+ .+.... ....+++.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~ 75 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVT 75 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEE
Confidence 35689999999999999999995 444331 23445543
No 204
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.67 E-value=2.9e-05 Score=56.97 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=23.5
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
....|+|+|++|+||||+++.++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34699999999999999999999876
No 205
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.66 E-value=3.1e-05 Score=55.15 Aligned_cols=25 Identities=32% Similarity=0.220 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..|+|.|++|+||||+++.++..+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999998764
No 206
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.65 E-value=3.7e-05 Score=58.41 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=24.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..+.+++|.|++|+|||||++.+++.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456899999999999999999998865
No 207
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.64 E-value=3.5e-05 Score=55.99 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
+.+++|+|++|+|||||++.++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 368999999999999999999863
No 208
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.64 E-value=2.4e-05 Score=58.38 Aligned_cols=27 Identities=41% Similarity=0.701 Sum_probs=23.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..+..++|+||+|+|||||++.+++.+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 345799999999999999999999865
No 209
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.63 E-value=3.5e-05 Score=56.60 Aligned_cols=26 Identities=27% Similarity=0.450 Sum_probs=23.3
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.+..++|+|++|+||||+++.++...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 35799999999999999999998865
No 210
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.61 E-value=8.8e-05 Score=64.54 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=39.5
Q ss_pred hhhHHHHHHHhCCc---eEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 118 HKGINLIRWRLCRK---RVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 118 ~~~~~~l~~~l~~~---~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+...-.+.+.+..+ +-+|++|+.-+ ...+..++..+. ..+..||++||+.+.+.. ++..+.+
T Consensus 548 ~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~--~~g~tvi~vtHd~~~~~~--~d~i~~l 618 (670)
T 3ux8_A 548 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLV--DNGDTVLVIEHNLDVIKT--ADYIIDL 618 (670)
T ss_dssp HHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECCCHHHHTT--CSEEEEE
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHh--CCEEEEe
Confidence 33445677777554 46999998732 233444443332 247889999999987643 6677766
No 211
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.61 E-value=3.8e-05 Score=56.34 Aligned_cols=27 Identities=15% Similarity=0.383 Sum_probs=24.0
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.+..++|+||+|+|||||++.+.....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 567999999999999999999998653
No 212
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.60 E-value=8.7e-05 Score=56.31 Aligned_cols=44 Identities=14% Similarity=0.016 Sum_probs=30.5
Q ss_pred cchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 30 GIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 30 gR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
+...-+.++.+-..........|+|+|++|+||||+++.++..+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 10 STIDLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CHHHHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 33344444444333223355789999999999999999998765
No 213
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.59 E-value=0.00055 Score=56.25 Aligned_cols=36 Identities=28% Similarity=0.175 Sum_probs=28.2
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 83 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~ 83 (216)
.+.+++++|++|+||||++..++..+...-..+..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv 131 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV 131 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 368999999999999999999998776543334333
No 214
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.59 E-value=0.0001 Score=59.40 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=36.3
Q ss_pred HHHHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 35 MEKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 35 ~~~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
...|...|. .+-+.+.++.|.|++|+|||+|+..++......-..+.|++
T Consensus 59 ~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 59 SLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 345555554 34345679999999999999999999886654445677776
No 215
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.59 E-value=8.3e-05 Score=53.85 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=23.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
..|+|.|++|+||||+++.++.++...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 468999999999999999999987643
No 216
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.59 E-value=8.1e-05 Score=54.77 Aligned_cols=45 Identities=11% Similarity=0.329 Sum_probs=34.2
Q ss_pred ccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 29 VGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 29 vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+.-...+..+..++... ++...++++||+|+|||+++..++..+.
T Consensus 39 ~~~~~f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 39 IEFITFLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CCHHHHHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44445667777777642 3345799999999999999999998764
No 217
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.57 E-value=5.8e-05 Score=56.93 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=31.6
Q ss_pred HHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 40 GYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 40 ~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
..|..+-..+.+++|.|++|+|||||+..++......-..+.|++
T Consensus 14 ~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 14 EILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp HHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 334433345679999999999999999888765544444566654
No 218
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.57 E-value=6.1e-05 Score=54.67 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=23.3
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.+..|+|.|++|+||||+++.++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 35789999999999999999998866
No 219
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.57 E-value=0.00027 Score=55.82 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.|...|..+-+.+.++.|+|++|+|||+|+..++...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444454443456899999999999999999998753
No 220
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.57 E-value=7.9e-05 Score=64.05 Aligned_cols=51 Identities=20% Similarity=0.341 Sum_probs=41.7
Q ss_pred CCcccccccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 22 PSAVDGLVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 22 ~~~~~~~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
|..-..++|.+..++.+...+..+ ..++|+||+|+|||||++.+++.+...
T Consensus 37 p~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 37 EKLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp SSHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 344567899999998888877654 589999999999999999999976543
No 221
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.57 E-value=4.8e-05 Score=54.96 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
...|+|+|++|+||||+++.++..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998763
No 222
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.57 E-value=0.00088 Score=52.33 Aligned_cols=35 Identities=29% Similarity=0.223 Sum_probs=27.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 83 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~ 83 (216)
+.+++++|++|+||||++..++..+......+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 67999999999999999999998765543344444
No 223
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.57 E-value=7e-05 Score=60.11 Aligned_cols=29 Identities=38% Similarity=0.415 Sum_probs=25.4
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
.+.+++|+|++|+||||+++.+++.+...
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~ 184 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE 184 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc
Confidence 46799999999999999999999876543
No 224
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.57 E-value=5.3e-05 Score=59.70 Aligned_cols=30 Identities=33% Similarity=0.389 Sum_probs=26.1
Q ss_pred CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 46 LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 46 ~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
...+.+++|.|++|+|||||++.++..+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 356789999999999999999999987653
No 225
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.57 E-value=8.4e-05 Score=57.86 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.9
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..+..++|+|++|+||||+++.++...
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346799999999999999999998765
No 226
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.56 E-value=0.00038 Score=56.72 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.|...|..+-..+.++.|+|++|+|||||+..++..
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 344455444445689999999999999999987643
No 227
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.56 E-value=3.7e-05 Score=56.15 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=22.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..++|+|++|+|||||++.+++.+.
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 4689999999999999999998764
No 228
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.56 E-value=3.9e-05 Score=56.55 Aligned_cols=26 Identities=31% Similarity=0.603 Sum_probs=23.5
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.+..++|+|++|+|||||++.++..+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 45789999999999999999998876
No 229
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.55 E-value=0.00011 Score=58.08 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=33.3
Q ss_pred cccchhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 28 LVGIASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 28 ~vgR~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
++|....+..+..-+... .....+++|.|++|+|||||++.+...+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~ 118 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR 118 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 445555555544433322 344569999999999999999999887653
No 230
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.55 E-value=0.00035 Score=51.61 Aligned_cols=23 Identities=35% Similarity=0.320 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
+|+|.||+|+||+|.++.++.++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999875
No 231
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.54 E-value=9.7e-05 Score=53.46 Aligned_cols=29 Identities=31% Similarity=0.431 Sum_probs=25.3
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
.+..|+|.|++|+||||+++.++..+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~ 40 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKE 40 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 46799999999999999999999877543
No 232
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.54 E-value=7.1e-05 Score=54.06 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=22.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
+..|+|+|++|+||||+++.++..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 233
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.53 E-value=6e-05 Score=54.04 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
..|+|.|++|+||||+++.++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999987
No 234
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.53 E-value=0.00011 Score=57.69 Aligned_cols=28 Identities=36% Similarity=0.400 Sum_probs=25.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+.+++|+|++|+|||||++.+.+.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4568999999999999999999998765
No 235
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.53 E-value=5.8e-05 Score=54.64 Aligned_cols=26 Identities=23% Similarity=0.565 Sum_probs=23.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
..|+|.|++|+||||+++.++..+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 58999999999999999999987653
No 236
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.53 E-value=3.8e-05 Score=56.93 Aligned_cols=47 Identities=21% Similarity=0.314 Sum_probs=28.0
Q ss_pred HHHHhCCceEEEEEeCCC--CHHHHHHhhcCCCCCCCCcEEEEEeCCchhhhc
Q 039455 124 IRWRLCRKRVLVVLDDVD--QLEQLQALAGNHDWFGFGSRIIITTRDEHVLKG 174 (216)
Q Consensus 124 l~~~l~~~~~llvlDd~~--~~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~ 174 (216)
+...+..++-+|++|+.- ....+..++..+ ..+..|| +||+...+..
T Consensus 115 lAraL~~~p~lllLDEPts~~~~~l~~~l~~l---~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 115 YMRGRTLNDAFVILDEAQNTTPAQMKMFLTRL---GFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp GGTTCCBCSEEEEECSGGGCCHHHHHHHHTTB---CTTCEEE-EEEC------
T ss_pred HHHHHhcCCCEEEEeCCccccHHHHHHHHHHh---cCCCEEE-EECCHHHHhC
Confidence 345556678899999884 344555555554 2467788 9998765544
No 237
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.53 E-value=4.6e-05 Score=55.95 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=22.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..+|+|+|++|+||||+++.++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999876
No 238
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.52 E-value=6.2e-05 Score=57.49 Aligned_cols=25 Identities=24% Similarity=0.118 Sum_probs=22.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.+++|+|++|+|||||++.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999998753
No 239
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.52 E-value=6.1e-05 Score=57.17 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
...++|.|++|+|||||++.++..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4799999999999999999999765
No 240
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.51 E-value=8e-05 Score=69.22 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=37.5
Q ss_pred hhhHHHHHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 118 HKGINLIRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 118 ~~~~~~l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
+...-.+.+.+-.++-+++|||.-+. ..+...+... ..+.++|++||..+.... ++..+.+
T Consensus 531 q~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~---~~~~t~i~itH~l~~i~~--~d~i~vl 597 (1284)
T 3g5u_A 531 QKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA---REGRTTIVIAHRLSTVRN--ADVIAGF 597 (1284)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHH---HTTSEEEEECSCHHHHTT--CSEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH---cCCCEEEEEecCHHHHHc--CCEEEEE
Confidence 34455677888888889999988321 2233332221 246789999998776544 4444444
No 241
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.50 E-value=0.00012 Score=57.46 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=26.7
Q ss_pred HhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 42 LEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 42 l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
+...-+.+..++|+||+|+|||||++.+++.+
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 33344567899999999999999999999876
No 242
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.49 E-value=6.9e-05 Score=55.94 Aligned_cols=24 Identities=42% Similarity=0.534 Sum_probs=21.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..|+|+|++|+||||+++.++..+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 243
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.49 E-value=3.7e-05 Score=57.76 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=17.4
Q ss_pred CeeEEEEEecCCCcHHHHHHHHH-HHh
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLY-NTL 73 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~-~~~ 73 (216)
.+.+++|+||+|+|||||++.++ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45799999999999999999999 754
No 244
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.49 E-value=6.4e-05 Score=55.39 Aligned_cols=28 Identities=46% Similarity=0.522 Sum_probs=24.0
Q ss_pred CCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 46 LDDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 46 ~~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
-..+..++|+|++|+||||+++.++..+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456799999999999999999998754
No 245
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.48 E-value=6e-05 Score=53.61 Aligned_cols=20 Identities=50% Similarity=0.743 Sum_probs=18.8
Q ss_pred eEEEEEecCCCcHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVL 69 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~ 69 (216)
.+|+|+|++|+||||+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 246
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.48 E-value=6.3e-05 Score=54.14 Aligned_cols=25 Identities=40% Similarity=0.469 Sum_probs=22.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
...|+|+|++|+||||+++.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999765
No 247
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.47 E-value=9.5e-05 Score=53.16 Aligned_cols=28 Identities=29% Similarity=0.299 Sum_probs=24.1
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..|+|+|++|+||||+++.++..+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467899999999999999999998764
No 248
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.47 E-value=0.00011 Score=61.27 Aligned_cols=35 Identities=26% Similarity=0.294 Sum_probs=27.8
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEe
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF 82 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~ 82 (216)
.+.+++|+|++|+|||||++.+++.+......+.+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l 326 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 326 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence 46899999999999999999999877644333333
No 249
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.46 E-value=8.5e-05 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.364 Sum_probs=22.7
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
....|+|+|++|+||||+++.++..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999886
No 250
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.46 E-value=8.2e-05 Score=56.76 Aligned_cols=26 Identities=38% Similarity=0.461 Sum_probs=22.9
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.+.+|+|.|++|+||||+++.++.++
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999999654
No 251
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.46 E-value=9.3e-05 Score=53.81 Aligned_cols=25 Identities=24% Similarity=0.290 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
...|+|.|++|+||||+++.++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999865
No 252
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.45 E-value=7.9e-05 Score=53.39 Aligned_cols=24 Identities=42% Similarity=0.516 Sum_probs=21.7
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.|+|+|++|+||||+++.++..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999998763
No 253
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.45 E-value=0.00014 Score=55.40 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=24.5
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..++|+|++|+||||+++.++..+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3467999999999999999999998764
No 254
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.44 E-value=0.0001 Score=54.23 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
+..|+|.|++|+||||+++.++..+...
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 4689999999999999999999877543
No 255
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.44 E-value=0.00014 Score=53.69 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=24.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
+..|+|+|++|+||||+++.++..+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 5789999999999999999999876543
No 256
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.44 E-value=8.6e-05 Score=54.52 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 039455 51 FIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~ 71 (216)
.|+|+|++|+||||+++.++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 257
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.43 E-value=0.0001 Score=53.46 Aligned_cols=25 Identities=20% Similarity=0.179 Sum_probs=22.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
+..|+|.|++|+||||+++.++..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998765
No 258
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.41 E-value=0.00026 Score=56.34 Aligned_cols=38 Identities=24% Similarity=0.303 Sum_probs=29.1
Q ss_pred HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
+.+.+...-..+..++|+|++|+|||||++.+...+..
T Consensus 44 ~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~ 81 (337)
T 2qm8_A 44 LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTA 81 (337)
T ss_dssp HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 33444433456789999999999999999999986543
No 259
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.41 E-value=5.3e-05 Score=70.43 Aligned_cols=62 Identities=16% Similarity=0.164 Sum_probs=39.2
Q ss_pred hhhhHHHHHHHhCCceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEe
Q 039455 117 VHKGINLIRWRLCRKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKV 183 (216)
Q Consensus 117 ~~~~~~~l~~~l~~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l 183 (216)
.+...-.+.+++-.++-+|++|+.-+ ...+...+... ..+..+|++||+.+.... ++..+.+
T Consensus 1175 Gq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~---~~~~tvi~isH~l~~i~~--~dri~vl 1242 (1284)
T 3g5u_A 1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA---REGRTCIVIAHRLSTIQN--ADLIVVI 1242 (1284)
T ss_dssp HHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH---SSSSCEEEECSCTTGGGS--CSEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh---CCCCEEEEEecCHHHHHc--CCEEEEE
Confidence 33445567888888899999998732 23333333322 246789999998877644 4544444
No 260
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.41 E-value=0.00035 Score=57.26 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=25.7
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
..+..++|+||+|+|||||++.+++.+...
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 345799999999999999999999877544
No 261
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.40 E-value=0.00038 Score=64.98 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.8
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.+..++|+|++|+|||||++.+.+.+
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~ 1129 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFY 1129 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCc
Confidence 45799999999999999999998744
No 262
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.39 E-value=7.8e-05 Score=53.80 Aligned_cols=25 Identities=28% Similarity=0.415 Sum_probs=22.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..|+|+|++|+||||+++.++..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998653
No 263
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.39 E-value=0.00011 Score=52.19 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..|+|+|++|+||||+++.++.++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998764
No 264
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.39 E-value=0.00011 Score=53.46 Aligned_cols=25 Identities=32% Similarity=0.323 Sum_probs=22.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..|+|.|++|+||||+++.++..+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999998763
No 265
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.39 E-value=0.00043 Score=54.58 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=32.5
Q ss_pred HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
|...+ .+-..+..++|.|++|+|||||+..++.....+...+.|++
T Consensus 58 LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 58 LDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp HHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred HHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 33334 33345689999999999999999999876543334566654
No 266
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.38 E-value=0.00012 Score=53.92 Aligned_cols=28 Identities=36% Similarity=0.500 Sum_probs=24.4
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
.+..|+|+|++|+||||+++.++..+..
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3578999999999999999999987643
No 267
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.38 E-value=0.00015 Score=56.48 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=28.5
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCC-ceEee
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFE-ASSFL 83 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~-~~~~~ 83 (216)
..+.+++|.|++|+|||||++.++..+..... .+.|+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 45689999999999999999999987654322 34444
No 268
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.38 E-value=9.2e-05 Score=54.47 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.3
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
.+++|+|++|+||||+++.++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 269
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.38 E-value=0.00025 Score=57.33 Aligned_cols=29 Identities=31% Similarity=0.279 Sum_probs=25.1
Q ss_pred CCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 45 GLDDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 45 ~~~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.-+.+..++|+|++|+|||||++.+++..
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34556899999999999999999999865
No 270
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.38 E-value=0.00017 Score=68.90 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=35.4
Q ss_pred HHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 38 MNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 38 l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
|..+|. .+-+.+..+.|+||+|+|||+||.+++.....+-..+.|++
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 444444 23234679999999999999999999987776666777776
No 271
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.37 E-value=0.00012 Score=53.50 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.|+|.|++|+||||+++.++..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998764
No 272
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.37 E-value=0.00014 Score=53.26 Aligned_cols=26 Identities=31% Similarity=0.225 Sum_probs=23.2
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.+..|+|+|++|+||||+++.++..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999999876
No 273
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.36 E-value=0.0017 Score=53.67 Aligned_cols=46 Identities=13% Similarity=0.100 Sum_probs=32.2
Q ss_pred HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC-CCCceEeec
Q 039455 38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLA 84 (216)
Q Consensus 38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~-~~~~~~~~~ 84 (216)
|...+ .+-..+..+.|.|++|+|||+|+..++..... .-..+.|++
T Consensus 190 LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 190 LDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp HHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred hhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 33444 34445689999999999999999999986543 223455554
No 274
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.36 E-value=0.00074 Score=52.71 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=28.4
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 83 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~ 83 (216)
.+.+++++|++|+||||++..++..+......+.++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 467999999999999999999998776543444444
No 275
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.36 E-value=0.00018 Score=51.41 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=24.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
.+++.|.|++|+|||||+..++..+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 4689999999999999999999877654
No 276
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.36 E-value=0.00016 Score=53.01 Aligned_cols=26 Identities=31% Similarity=0.324 Sum_probs=23.0
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
....|+|+|++|+||||+++.++..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34689999999999999999998764
No 277
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.34 E-value=0.00022 Score=58.69 Aligned_cols=50 Identities=22% Similarity=0.224 Sum_probs=37.3
Q ss_pred cccccchhHHHHHHHHHhcC------------CCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 26 DGLVGIASRMEKMNGYLEAG------------LDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 26 ~~~vgR~~~~~~l~~~l~~~------------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
.+.+|.+...+.+...+... ......++++||+|+|||++++.++..+..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 45788888888776655211 112467999999999999999999987643
No 278
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.34 E-value=8.6e-05 Score=53.40 Aligned_cols=26 Identities=38% Similarity=0.381 Sum_probs=18.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
...|+|+|++|+||||+++.++..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999987653
No 279
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.34 E-value=0.00017 Score=52.75 Aligned_cols=26 Identities=38% Similarity=0.456 Sum_probs=23.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.+..+|+|+|++|+||||+++.++..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34578999999999999999999875
No 280
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.34 E-value=0.00014 Score=54.08 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
...|+|.|++|+||||+++.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998763
No 281
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.34 E-value=0.00016 Score=52.24 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
...|+|+|++|+||||+++.++..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998865
No 282
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.33 E-value=0.00016 Score=55.01 Aligned_cols=27 Identities=22% Similarity=0.386 Sum_probs=23.6
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
...+|+|+|++|+||||+++.++..+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999988653
No 283
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.33 E-value=0.00015 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=20.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.|+|+|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 284
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.32 E-value=0.00053 Score=54.50 Aligned_cols=38 Identities=13% Similarity=0.135 Sum_probs=29.1
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
..+..++|.|++|+|||||+..++......-..+.|++
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45579999999999999999999886544334455553
No 285
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.31 E-value=0.0012 Score=54.27 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=27.9
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEe
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF 82 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~ 82 (216)
.+.+|.++|++|+||||++..++..+..+...+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 36899999999999999999999877665333433
No 286
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.31 E-value=0.00015 Score=53.08 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=22.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
+..|+|.|+.|+||||+++.++..+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999876
No 287
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.30 E-value=0.0082 Score=45.12 Aligned_cols=40 Identities=23% Similarity=0.115 Sum_probs=28.6
Q ss_pred ccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 29 VGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 29 vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
--|..+.+.+..++.. ..++|+|+.|+|||.++..++...
T Consensus 93 ~l~~~Q~~ai~~~~~~-----~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 93 SLRDYQEKALERWLVD-----KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCCHHHHHHHHHHTTT-----SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHhC-----CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 4455555555555543 238899999999999998888765
No 288
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.30 E-value=0.00016 Score=55.71 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.++|+|++|+|||||++.+++..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 289
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.29 E-value=0.00015 Score=51.56 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..|+|+|++|+||||+++.++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999875
No 290
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.29 E-value=0.00016 Score=53.61 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.|+|+|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 291
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.29 E-value=0.00016 Score=59.16 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=22.4
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
....++|.|++|+|||||++.+.+.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3469999999999999999999984
No 292
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.29 E-value=0.0002 Score=52.93 Aligned_cols=27 Identities=33% Similarity=0.300 Sum_probs=24.1
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.+..|+|.|++|+||||+++.++..+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999998764
No 293
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.29 E-value=0.00018 Score=51.03 Aligned_cols=24 Identities=29% Similarity=0.364 Sum_probs=21.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.|+|+|++|+||||+++.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 589999999999999999998653
No 294
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.29 E-value=0.0017 Score=64.04 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..+.++||+|+|||++|+.+....
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~ 1291 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS 1291 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC
Confidence 689999999999999998777643
No 295
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.28 E-value=0.00018 Score=52.17 Aligned_cols=24 Identities=54% Similarity=0.744 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.|+|+|++|+||||+++.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999998764
No 296
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.28 E-value=0.00031 Score=56.05 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=30.3
Q ss_pred hhHHHHHHHHHhcC--CCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 32 ASRMEKMNGYLEAG--LDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 32 ~~~~~~l~~~l~~~--~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+.-.+.+...+... ......++|+|++|+||||+++.++..+.
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 44445555555422 23456799999999999999999988543
No 297
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.28 E-value=0.00016 Score=64.16 Aligned_cols=61 Identities=18% Similarity=0.169 Sum_probs=40.6
Q ss_pred hHHHHHHHhCCc---eEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 120 GINLIRWRLCRK---RVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 120 ~~~~l~~~l~~~---~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
..-.+...+..+ +-++|||+.-. ...+..++..+. ..+..||++||+.++. .. ++..+.+.
T Consensus 737 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~--~~G~tVIvisHdl~~i-~~-aDrii~L~ 806 (842)
T 2vf7_A 737 QRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLV--DAGNTVIAVEHKMQVV-AA-SDWVLDIG 806 (842)
T ss_dssp HHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECCCHHHH-TT-CSEEEEEC
T ss_pred HHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--hCCCEEEEEcCCHHHH-Hh-CCEEEEEC
Confidence 344577777764 69999998732 233444443332 3478899999999887 33 77788884
No 298
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=97.27 E-value=0.0007 Score=54.27 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=29.6
Q ss_pred HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
.+...+........+|+|+|.+|+|||||+..++..+...
T Consensus 67 ~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~ 106 (355)
T 3p32_A 67 QLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIER 106 (355)
T ss_dssp HHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 3444443334566899999999999999999998866443
No 299
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.26 E-value=0.00019 Score=52.16 Aligned_cols=25 Identities=36% Similarity=0.573 Sum_probs=22.3
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
.|+|.|+.|+||||+++.+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987644
No 300
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.26 E-value=0.00021 Score=54.78 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=23.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
...|+|+|++|+||||+++.++..+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998754
No 301
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.26 E-value=0.00024 Score=60.24 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=33.5
Q ss_pred cccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 28 LVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 28 ~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
.+.+....+.+..........+.+++|+|++|+|||||++.++..+...
T Consensus 348 ~f~~peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~ 396 (552)
T 3cr8_A 348 WYSFPEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLMEM 396 (552)
T ss_dssp TTSCHHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred cccccchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhccc
Confidence 3444444444444332122345899999999999999999999987643
No 302
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.26 E-value=0.0017 Score=51.52 Aligned_cols=141 Identities=7% Similarity=-0.050 Sum_probs=78.4
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcC-CCCceEeeccccccccccCchHHHHHHHHHHHhhccccccchhhhHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLIIWDVHKGINLIRW 126 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 126 (216)
-.+++.++|+.|.||++.++.++..+.. .+.....+. ... ..++. ++...+. ..
T Consensus 17 ~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~---~~~~~----~l~~~~~-----------------~~ 71 (343)
T 1jr3_D 17 LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS-IDP---NTDWN----AIFSLCQ-----------------AM 71 (343)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE-CCT---TCCHH----HHHHHHH-----------------HH
T ss_pred CCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE-ecC---CCCHH----HHHHHhc-----------------Cc
Confidence 4579999999999999999999886542 222111111 111 11221 2221110 11
Q ss_pred HhCCceEEEEEeCCCC-H--HHHHHhhcCCCCCCCCcEEEEEeCCc-------hhhhcc-CCcceEEecCCChHHHHHHH
Q 039455 127 RLCRKRVLVVLDDVDQ-L--EQLQALAGNHDWFGFGSRIIITTRDE-------HVLKGH-GVTNIYKVRGLDYVEALQLF 195 (216)
Q Consensus 127 ~l~~~~~llvlDd~~~-~--~~~~~l~~~~~~~~~~~~il~tsr~~-------~~~~~~-~~~~~~~l~~l~~~~~~~ll 195 (216)
.+.+++-++|+|+++. . +..+.+...+..-.+++.+|+++... .+...+ .....+++.+++.++....+
T Consensus 72 plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 72 SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp HHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHH
T ss_pred CCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHH
Confidence 2335566889999865 3 33444443333223566666666432 223332 23478999999999999888
Q ss_pred hhhhcCCC--CCchhHhhhc
Q 039455 196 HLKVSKGK--QPTDDRVELS 213 (216)
Q Consensus 196 ~~~~~~~~--~~~~~~~~l~ 213 (216)
.+.+-..+ .+++..+.|+
T Consensus 152 ~~~~~~~g~~i~~~a~~~l~ 171 (343)
T 1jr3_D 152 AARAKQLNLELDDAANQVLC 171 (343)
T ss_dssp HHHHHHTTCEECHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHH
Confidence 87664333 3334444443
No 303
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.26 E-value=0.00018 Score=53.82 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=22.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
...|+|.|++|+||||+++.++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3689999999999999999999865
No 304
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.26 E-value=0.00017 Score=53.76 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
...|+|.|++|+||||+++.++..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999998764
No 305
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.26 E-value=0.00044 Score=55.78 Aligned_cols=30 Identities=17% Similarity=0.018 Sum_probs=25.4
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
..+..++|+|++|+|||||++.++..+.+.
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 346799999999999999999998876543
No 306
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=97.24 E-value=0.00099 Score=55.11 Aligned_cols=27 Identities=33% Similarity=0.516 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
+..++|+|++|+|||||+..++.....
T Consensus 151 Gq~~~i~G~sGvGKTtL~~~l~~~~~~ 177 (473)
T 1sky_E 151 GGKIGLFGGAGVGKTVLIQELIHNIAQ 177 (473)
T ss_dssp TCEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCccHHHHHHHhhhhh
Confidence 357899999999999999999886543
No 307
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.24 E-value=0.00011 Score=52.66 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
+.++|+|++|+|||||++.++..+...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999999877643
No 308
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.21 E-value=0.00021 Score=51.39 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=21.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
...+|+|++|+|||||++.+..-+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 488999999999999999998754
No 309
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.21 E-value=0.0079 Score=49.46 Aligned_cols=44 Identities=18% Similarity=0.220 Sum_probs=32.0
Q ss_pred hHHHHHHHHHhcC-------CCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 33 SRMEKMNGYLEAG-------LDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 33 ~~~~~l~~~l~~~-------~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
...+++.+++... .....+|+++|.+|+||||++..++..+...
T Consensus 77 ~~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 77 IVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp HHHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 3445566666432 1235799999999999999999999876654
No 310
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.20 E-value=0.00018 Score=54.84 Aligned_cols=26 Identities=38% Similarity=0.524 Sum_probs=23.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+..|+|+|++|+||||+++.++..+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998653
No 311
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.20 E-value=0.0011 Score=59.45 Aligned_cols=64 Identities=17% Similarity=0.242 Sum_probs=41.5
Q ss_pred hhhHHHHHHHhCCc---eEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEecC
Q 039455 118 HKGINLIRWRLCRK---RVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVRG 185 (216)
Q Consensus 118 ~~~~~~l~~~l~~~---~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~~ 185 (216)
+...-.+...+..+ +-++|||+.-+ ...+..++..+. ..|..||+++|+.++... ++..+.+.|
T Consensus 810 ErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~--~~G~TVIvI~HdL~~i~~--ADrIivLgp 882 (916)
T 3pih_A 810 EAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLV--DRGNTVIVIEHNLDVIKN--ADHIIDLGP 882 (916)
T ss_dssp HHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHH--HTTCEEEEECCCHHHHTT--CSEEEEEES
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--hcCCEEEEEeCCHHHHHh--CCEEEEecC
Confidence 34444677777654 57999998732 233334443332 247789999999987654 678888844
No 312
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.20 E-value=0.00028 Score=56.58 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=35.9
Q ss_pred HHHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 36 EKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 36 ~~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
..|...|. .+-+.+.++.|.|++|+|||||+..++......-..+.|++
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34555554 34345679999999999999999999986654445677776
No 313
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.19 E-value=0.00013 Score=53.81 Aligned_cols=24 Identities=38% Similarity=0.627 Sum_probs=22.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.|+|.|++|+||||+++.++..+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998764
No 314
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.17 E-value=0.00027 Score=51.61 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=22.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
-.+|+|+|+.|+||||+++.++..+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998763
No 315
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.17 E-value=0.00038 Score=49.99 Aligned_cols=27 Identities=33% Similarity=0.469 Sum_probs=23.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
.+.++|+|++|+|||||++.+...+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 478999999999999999999987653
No 316
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.16 E-value=0.00032 Score=52.06 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
...|+|+|++|+||||+++.++.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999976
No 317
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.16 E-value=0.00024 Score=57.14 Aligned_cols=113 Identities=19% Similarity=0.143 Sum_probs=56.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccc-cccchhhhHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNL-IIWDVHKGINLIRWR 127 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~ 127 (216)
+..++|+|++|+|||||++.++..+... ...+.+......... ...... .+. ...... ...........+...
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie~~~e~~~~-~~~~~v-~~v---~~q~~~~~~~~~~t~~~~i~~~ 248 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIEDVPELFLP-DHPNHV-HLF---YPSEAKEEENAPVTAATLLRSC 248 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEESSSCCCCT-TCSSEE-EEE---CC----------CCHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEECCccccCcc-ccCCEE-EEe---ecCccccccccccCHHHHHHHH
Confidence 4799999999999999999999876543 333333222111100 000000 000 000000 000111234556666
Q ss_pred hCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCch
Q 039455 128 LCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDEH 170 (216)
Q Consensus 128 l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~~ 170 (216)
+...+-.+++|++...+.++.+ ..++. + ...++.|+|...
T Consensus 249 l~~~pd~~l~~e~r~~~~~~~l-~~l~~-g-~~~~l~t~H~~~ 288 (361)
T 2gza_A 249 LRMKPTRILLAELRGGEAYDFI-NVAAS-G-HGGSITSCHAGS 288 (361)
T ss_dssp TTSCCSEEEESCCCSTHHHHHH-HHHHT-T-CCSCEEEEECSS
T ss_pred HhcCCCEEEEcCchHHHHHHHH-HHHhc-C-CCeEEEEECCCC
Confidence 7777778888998765544433 22221 1 123566777653
No 318
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.16 E-value=0.00029 Score=55.30 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..+|+|.||+|+|||+|+..++..+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4689999999999999999999864
No 319
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.15 E-value=0.00029 Score=51.64 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhc
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+|+|+|++|+||||+++.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988653
No 320
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.15 E-value=0.00029 Score=53.06 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=22.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+++|.|++|+||||+++.++..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999998653
No 321
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.15 E-value=0.00019 Score=53.87 Aligned_cols=26 Identities=27% Similarity=0.114 Sum_probs=23.4
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
..+..++|.|++|+||||+++.+++.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45789999999999999999998875
No 322
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.14 E-value=0.0003 Score=51.07 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=22.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.-.++|.|++|+|||||++.+.+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998743
No 323
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.14 E-value=0.00035 Score=55.84 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=25.8
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
..+..++|.|++|+|||||++.+++.....
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 345899999999999999999999986543
No 324
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.13 E-value=0.00028 Score=56.73 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=24.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
...++|+|++|+|||||++.+++.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 679999999999999999999987653
No 325
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.13 E-value=0.00033 Score=51.87 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=21.0
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999999876
No 326
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.12 E-value=0.00029 Score=55.87 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.7
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
...+|+|+||.|+|||+|+..++.++.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 347999999999999999999998653
No 327
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.12 E-value=0.00027 Score=52.50 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=22.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..|+|.|++|+||||+++.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999876
No 328
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.12 E-value=0.00089 Score=49.52 Aligned_cols=44 Identities=23% Similarity=0.205 Sum_probs=31.3
Q ss_pred chhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 31 IASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 31 R~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
.++..+.+...+.. .....++|+|.+|+|||||+..++......
T Consensus 14 ~~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 14 NKRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 34444455554433 245799999999999999999999875443
No 329
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.11 E-value=0.00047 Score=57.79 Aligned_cols=48 Identities=8% Similarity=-0.020 Sum_probs=36.2
Q ss_pred cccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 28 LVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 28 ~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
..-|.+..+.+.+.......+..+|+++|++|+||||+++.++.++..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 455665666666655322345689999999999999999999998864
No 330
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.11 E-value=0.0013 Score=48.72 Aligned_cols=40 Identities=33% Similarity=0.360 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 34 RMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 34 ~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
..+.+...+.. .....|+|+|.+|+|||||+..++.....
T Consensus 25 ~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~~ 64 (226)
T 2hf9_A 25 LADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLKD 64 (226)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 34445554443 24578999999999999999999986533
No 331
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.10 E-value=0.00042 Score=54.25 Aligned_cols=26 Identities=35% Similarity=0.243 Sum_probs=23.2
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
...+++|+||+|+|||+|+..++..+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhC
Confidence 35789999999999999999999864
No 332
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.10 E-value=0.00044 Score=51.94 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=25.8
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
..+..|+|.|++|+||||+++.++..+..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 35689999999999999999999998765
No 333
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.09 E-value=0.00041 Score=54.75 Aligned_cols=26 Identities=35% Similarity=0.308 Sum_probs=23.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
...|+|+||+|+|||||+..++.++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999998653
No 334
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.09 E-value=0.00055 Score=49.59 Aligned_cols=26 Identities=27% Similarity=0.105 Sum_probs=21.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+.+++++|+.|+||||++..++.++.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36889999999999999977776654
No 335
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.09 E-value=0.00036 Score=52.07 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.1
Q ss_pred EEEEEecCCCcHHHHHHHHHHHh
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.|+|.|++|+||||+++.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998876
No 336
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.08 E-value=0.00099 Score=53.09 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=28.0
Q ss_pred HHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 38 MNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 38 l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+...+.........++|+|++|+|||||+..++..+.
T Consensus 45 ~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 45 LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3333333335678999999999999999999987654
No 337
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=97.08 E-value=0.00029 Score=51.54 Aligned_cols=25 Identities=28% Similarity=0.169 Sum_probs=22.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
+..++|+|++|+|||+|+..++.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4789999999999999999998754
No 338
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.08 E-value=0.00019 Score=55.98 Aligned_cols=27 Identities=19% Similarity=0.417 Sum_probs=20.4
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+..+|+|+|++|+||||+++.+...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999988653
No 339
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.08 E-value=0.00041 Score=48.47 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
...+|+|++|+|||+++.++..-+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 688999999999999999987543
No 340
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.08 E-value=0.00031 Score=51.20 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.-.++|.|++|+|||||++.+.+.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 357899999999999999999874
No 341
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.07 E-value=0.00039 Score=55.19 Aligned_cols=25 Identities=28% Similarity=0.293 Sum_probs=22.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.+|+|.||+|+|||||+..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998753
No 342
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.06 E-value=0.00037 Score=55.04 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=23.2
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..++++|+|++|+|||||++.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46799999999999999999999754
No 343
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.06 E-value=0.00044 Score=51.91 Aligned_cols=26 Identities=27% Similarity=0.119 Sum_probs=23.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
...|+|.|++|+||||+++.++.++.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999998763
No 344
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.05 E-value=0.00049 Score=53.90 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+..++|.|++|+|||||++.+. ...
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 3689999999999999999998 543
No 345
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.03 E-value=0.00049 Score=53.31 Aligned_cols=24 Identities=33% Similarity=0.673 Sum_probs=21.4
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
....|+|+|++|+||||+++.++.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999983
No 346
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.03 E-value=0.0034 Score=51.44 Aligned_cols=36 Identities=28% Similarity=0.244 Sum_probs=28.1
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 83 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~ 83 (216)
.+.+++++|++|+||||++..++..+......+.++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 367899999999999999999998776553334433
No 347
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.01 E-value=0.00051 Score=51.67 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.8
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..+..|+|+|++|+||||+++.++..+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456799999999999999999998764
No 348
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.01 E-value=0.00082 Score=55.42 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=25.5
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
..+..++|.|++|+|||||++.+++....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 45689999999999999999999997654
No 349
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.00036 Score=57.91 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=24.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..+..++|.|++|+|||||++.+++.+
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 456899999999999999999999854
No 350
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.98 E-value=0.0038 Score=45.62 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=25.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcCCCCceEee
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTLKDQFEASSFL 83 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~ 83 (216)
-|+|-|.-|+||||.++.+++.+......+.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 377889999999999999999887654444443
No 351
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.93 E-value=0.00062 Score=56.66 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.8
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.+++|.|++|+|||||++.++....
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 7999999999999999999998654
No 352
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.93 E-value=0.00059 Score=53.17 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=21.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
..|+|.|++|+||||+++.++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 353
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.92 E-value=0.0006 Score=48.08 Aligned_cols=22 Identities=27% Similarity=0.372 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
..++|.|++|+|||||++.+.+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999986
No 354
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.92 E-value=0.0011 Score=54.96 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=32.2
Q ss_pred cccccccchhHHHHHHH----HHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 24 AVDGLVGIASRMEKMNG----YLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 24 ~~~~~vgR~~~~~~l~~----~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
.|..|-+-+.+-++... ++..+ ...++|.|++|+|||+++..++..+...
T Consensus 19 ~p~~~~~Ln~~Q~~av~~~~~~i~~~---~~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 19 SHMTFDDLTEGQKNAFNIVMKAIKEK---KHHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp --CCSSCCCHHHHHHHHHHHHHHHSS---SCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCccccCCHHHHHHHHHHHHHHhcC---CCEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 34445554444443333 33332 2499999999999999999999876544
No 355
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.91 E-value=0.00095 Score=53.36 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.0
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
....++|+|++|+|||||++.+.....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 468999999999999999999998554
No 356
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.91 E-value=0.002 Score=53.23 Aligned_cols=38 Identities=18% Similarity=0.243 Sum_probs=29.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
..+..++|.|++|+|||+|+..++.....+-..+.|++
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 45689999999999999999999886544333455554
No 357
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.0008 Score=48.51 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=22.1
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
....|+|+|++|+|||||+..+.+.
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999874
No 358
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.90 E-value=0.00051 Score=56.29 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=23.4
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
....+|+|+|++|+||||+++.++...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 346799999999999999999998754
No 359
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.89 E-value=0.00066 Score=55.58 Aligned_cols=25 Identities=40% Similarity=0.508 Sum_probs=21.5
Q ss_pred CeeE--EEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRF--IGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~--i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.+.. ++|+|++|+|||||++.+++.
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 3456 999999999999999999874
No 360
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.87 E-value=0.00082 Score=47.99 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
+..++|.|++|+|||||+..+..+
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 578999999999999999999873
No 361
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.86 E-value=0.0013 Score=55.30 Aligned_cols=26 Identities=19% Similarity=0.091 Sum_probs=22.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
..++|+|++|+||||+++.+.+.+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 56999999999999999999986643
No 362
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.85 E-value=0.00065 Score=53.15 Aligned_cols=26 Identities=27% Similarity=0.553 Sum_probs=22.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+..++|.|++|+|||||++.++....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 36899999999999999999987544
No 363
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.85 E-value=0.00076 Score=47.99 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
...|+|+|.+|+|||||++.+.+.
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999864
No 364
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.84 E-value=0.00043 Score=49.81 Aligned_cols=21 Identities=43% Similarity=0.482 Sum_probs=19.5
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 039455 51 FIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~ 71 (216)
.|+|+|++|+|||||++.+.+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999986
No 365
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.83 E-value=0.00042 Score=52.21 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=29.1
Q ss_pred HhcCCCCeeEEEEEecCCCcHHHHHHHHHHH-hcCCCCceEeec
Q 039455 42 LEAGLDDVRFIGICGMGGIGKTTLAKVLYNT-LKDQFEASSFLA 84 (216)
Q Consensus 42 l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~-~~~~~~~~~~~~ 84 (216)
+..+-+.+..+.|.|++|+|||+|+..++.. ..+....+.|++
T Consensus 23 l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 23 IEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp TTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred hcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 3334345689999999999999999998754 222233444543
No 366
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.83 E-value=0.00085 Score=48.14 Aligned_cols=24 Identities=25% Similarity=0.326 Sum_probs=21.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
...|+|.|++|+|||||++.+.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999873
No 367
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.82 E-value=0.00092 Score=46.50 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
..|+|.|++|+|||||+..+.+.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 368
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.81 E-value=0.00045 Score=50.62 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=22.5
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
..+..++|+|++|+|||||++.+.+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999988753
No 369
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.81 E-value=0.00089 Score=54.33 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=22.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.+|+|.||+|+|||||+..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 589999999999999999999864
No 370
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.80 E-value=0.022 Score=48.31 Aligned_cols=65 Identities=12% Similarity=0.270 Sum_probs=39.5
Q ss_pred eEEEEEeCCCCH-----HHHHHhhcCCCC--CCCCcEEEEEeCCch--hhh---ccCCcceEEecCCChHHHHHHHh
Q 039455 132 RVLVVLDDVDQL-----EQLQALAGNHDW--FGFGSRIIITTRDEH--VLK---GHGVTNIYKVRGLDYVEALQLFH 196 (216)
Q Consensus 132 ~~llvlDd~~~~-----~~~~~l~~~~~~--~~~~~~il~tsr~~~--~~~---~~~~~~~~~l~~l~~~~~~~ll~ 196 (216)
.++||+|++..+ ..+...+..+.. ...|..+|++|..+. ... .-+....+.+..-+..++..+|.
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 468999999754 222222211111 135778888887664 221 11356678888888888888874
No 371
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=96.80 E-value=0.0018 Score=48.05 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=25.5
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
.+..|+|.|+.|+||||+++.+...+...
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999999987654
No 372
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.76 E-value=0.00097 Score=48.60 Aligned_cols=30 Identities=20% Similarity=0.024 Sum_probs=21.9
Q ss_pred CCeeEEEEEecCCCcHH-HHHHHHHHHhcCC
Q 039455 47 DDVRFIGICGMGGIGKT-TLAKVLYNTLKDQ 76 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKT-tL~~~~~~~~~~~ 76 (216)
..+....|+|+-|+||| .|++.+.+.....
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~ 48 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQ 48 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 34689999999999999 6666665544433
No 373
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.74 E-value=0.002 Score=47.69 Aligned_cols=36 Identities=14% Similarity=-0.036 Sum_probs=27.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEe
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSF 82 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~ 82 (216)
..+.+.+++|+-|+||||.+...+.++..+...+..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli 61 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIV 61 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 446899999999999999999988876654333333
No 374
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.74 E-value=0.0008 Score=53.88 Aligned_cols=25 Identities=28% Similarity=0.473 Sum_probs=22.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..++|.|++|+|||||++.+.....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 6899999999999999999987654
No 375
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.73 E-value=0.0012 Score=49.72 Aligned_cols=26 Identities=35% Similarity=0.425 Sum_probs=23.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
+..|+|.|+.|+||||+++.++..+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 376
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.73 E-value=0.0021 Score=53.23 Aligned_cols=38 Identities=16% Similarity=0.227 Sum_probs=29.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcC-CCCceEeec
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFLA 84 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~-~~~~~~~~~ 84 (216)
..+..++|.|++|+|||||+..++..+.. .-..+.|++
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45679999999999999999999986543 223455554
No 377
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.73 E-value=0.001 Score=46.31 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
-.|++.|.+|+|||||+..+.+.
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 378
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.72 E-value=0.0023 Score=48.61 Aligned_cols=28 Identities=29% Similarity=0.300 Sum_probs=24.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
....++++.|.+|+||||++..++..+.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3468999999999999999999997665
No 379
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=96.72 E-value=0.00045 Score=59.20 Aligned_cols=49 Identities=18% Similarity=0.137 Sum_probs=35.0
Q ss_pred ccccccchhHHHHHHHHHhcCCC---------CeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 25 VDGLVGIASRMEKMNGYLEAGLD---------DVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 25 ~~~~vgR~~~~~~l~~~l~~~~~---------~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.+.++|.+...+.+...+..+.. ....+.++|++|+|||+||+.++...
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 45689999876666544443210 11279999999999999999998754
No 380
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.71 E-value=0.0025 Score=54.04 Aligned_cols=48 Identities=17% Similarity=0.149 Sum_probs=34.1
Q ss_pred cccchhHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 28 LVGIASRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 28 ~vgR~~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
.+-|-+..+.+.+...........|+++|++|+||||+++.+...+..
T Consensus 351 ~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 351 WFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 445555555566654222234578999999999999999999987643
No 381
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.71 E-value=0.0014 Score=45.88 Aligned_cols=25 Identities=16% Similarity=0.294 Sum_probs=21.7
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
..-.|+|.|++|+|||||+..+.+.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999999874
No 382
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.71 E-value=0.0016 Score=48.69 Aligned_cols=32 Identities=16% Similarity=-0.070 Sum_probs=25.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcCCCCceE
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASS 81 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~ 81 (216)
-.|++.|++|+||||++..++..+......+.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 56899999999999999998887655433333
No 383
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.71 E-value=0.0012 Score=48.60 Aligned_cols=24 Identities=29% Similarity=0.365 Sum_probs=21.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
...+|+|++|+||||++..+..-+
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHh
Confidence 689999999999999999987543
No 384
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=96.68 E-value=0.003 Score=48.47 Aligned_cols=31 Identities=23% Similarity=0.337 Sum_probs=24.7
Q ss_pred HhcCCCCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 42 LEAGLDDVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 42 l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
+.........|+++|.+|+|||||+..+.+.
T Consensus 32 ~~~~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 32 LKQEDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp HHHTTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred HhhcCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3333345678999999999999999999863
No 385
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.68 E-value=0.0018 Score=61.33 Aligned_cols=100 Identities=16% Similarity=0.096 Sum_probs=0.0
Q ss_pred HHHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhccccc
Q 039455 36 EKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERNLII 114 (216)
Q Consensus 36 ~~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 114 (216)
..|...+. .+-+.+.++.|.|++|+|||||+.+++......-..+.|++ ......... ...+--.+..-.-...
T Consensus 369 ~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis----~E~s~~~~~-a~~lGvd~~~L~i~~~ 443 (1706)
T 3cmw_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPIY-ARKLGVDIDNLLCSQP 443 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTSCCCHHH-HHHTTCCGGGCEEECC
T ss_pred HHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE----ccCchHHHH-HHHcCCCHHHeEEcCC
Q ss_pred cchhhhHHHHHHHh-CCceEEEEEeCC
Q 039455 115 WDVHKGINLIRWRL-CRKRVLVVLDDV 140 (216)
Q Consensus 115 ~~~~~~~~~l~~~l-~~~~~llvlDd~ 140 (216)
.+.+.....+.... ..+.-+||+|-+
T Consensus 444 ~~~e~~l~~l~~lv~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 444 DTGEQALEICDALARSGAVDVIVVDSV 470 (1706)
T ss_dssp SSHHHHHHHHHHHHHHTCCSEEEESCS
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCH
No 386
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.67 E-value=0.0011 Score=53.25 Aligned_cols=51 Identities=10% Similarity=0.167 Sum_probs=32.7
Q ss_pred CceEEEEEeCCCC------HHHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 130 RKRVLVVLDDVDQ------LEQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 130 ~~~~llvlDd~~~------~~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
.++-++++|+.-. ...+..++..+. ..+..||++||+.++... ++..+.+.
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~--~~g~tvi~itH~~~~~~~--~d~~~~l~ 358 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELE--RLNKVIVFITHDREFSEA--FDRKLRIT 358 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGG--GSSSEEEEEESCHHHHTT--CSCEEEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHH--hCCCEEEEEecchHHHHh--CCEEEEEE
Confidence 6788999998732 233444444443 347889999999887433 45555443
No 387
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.67 E-value=0.0016 Score=46.65 Aligned_cols=26 Identities=38% Similarity=0.391 Sum_probs=22.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.....|+|+|++|+|||||+..+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999998753
No 388
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.66 E-value=0.0013 Score=46.36 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
...|+|.|.+|+|||||++.+.+
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEEECCCCccHHHHHHHHhc
Confidence 46799999999999999999975
No 389
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.64 E-value=0.0033 Score=48.04 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=27.0
Q ss_pred HHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 37 KMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 37 ~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.+.+.+.........|+|.|.+|+|||||+..+.+.
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 333334443345678999999999999999999873
No 390
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.64 E-value=0.002 Score=45.68 Aligned_cols=26 Identities=23% Similarity=0.500 Sum_probs=22.7
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.....|+|.|.+|+|||||+..+.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34578999999999999999999874
No 391
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.64 E-value=0.0021 Score=61.79 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=36.3
Q ss_pred HHHHHHHh-cCCCCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 36 EKMNGYLE-AGLDDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 36 ~~l~~~l~-~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
..|...+. .+-+.+.++.|.|++|+|||||+..++......-..+.|++
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis 418 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 418 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 34444444 33345689999999999999999999987765555677776
No 392
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=96.63 E-value=0.00098 Score=52.16 Aligned_cols=22 Identities=32% Similarity=0.520 Sum_probs=19.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
-.|+|+|++|+|||||++.++.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4669999999999999999775
No 393
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.62 E-value=0.0013 Score=46.59 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=21.6
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
+...|+|.|.+|+|||||+..+.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999976
No 394
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=96.62 E-value=0.0016 Score=47.66 Aligned_cols=24 Identities=25% Similarity=0.250 Sum_probs=21.0
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
+.-.|+|+|.+|+|||||+..+..
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEEECcCCCCHHHHHHHHHh
Confidence 347899999999999999999886
No 395
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.62 E-value=0.0013 Score=45.87 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
-.|+|.|++|+|||||+..+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998863
No 396
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.61 E-value=0.002 Score=44.88 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
...|+|.|.+|+|||||+..+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999999863
No 397
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.61 E-value=0.0016 Score=49.16 Aligned_cols=29 Identities=38% Similarity=0.644 Sum_probs=25.4
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
.+..|+|.|++|+||||+++.++..+...
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 45799999999999999999999877643
No 398
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.60 E-value=0.0013 Score=46.11 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.-.|+|+|.+|+|||||+..+.+.
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999999864
No 399
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.59 E-value=0.0026 Score=54.25 Aligned_cols=28 Identities=29% Similarity=0.247 Sum_probs=24.8
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+..|+|+|++|+||||+++.+...+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999998765
No 400
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.59 E-value=0.0014 Score=52.11 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=35.4
Q ss_pred HHHHhCCceEEEEEeCCCCH------HHHHHhhcCCCCCCCCcEEEEEeCCchhhhccCCcceEEec
Q 039455 124 IRWRLCRKRVLVVLDDVDQL------EQLQALAGNHDWFGFGSRIIITTRDEHVLKGHGVTNIYKVR 184 (216)
Q Consensus 124 l~~~l~~~~~llvlDd~~~~------~~~~~l~~~~~~~~~~~~il~tsr~~~~~~~~~~~~~~~l~ 184 (216)
+...+..++-++++|+.-.. ..+..++..+. ..+..||++||+.++... ++..+.+.
T Consensus 265 ~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~~vi~~sH~~~~~~~--~d~~~~l~ 327 (339)
T 3qkt_A 265 MSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL--KKIPQVILVSHDEELKDA--ADHVIRIS 327 (339)
T ss_dssp HHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTG--GGSSEEEEEESCGGGGGG--CSEEEEEE
T ss_pred HHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--hcCCEEEEEEChHHHHHh--CCEEEEEE
Confidence 45566778889999988421 23333333332 345689999999776543 45555554
No 401
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.59 E-value=0.0014 Score=45.94 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=20.4
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
-.|+|.|++|+|||||+..+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 402
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.59 E-value=0.0012 Score=48.88 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
..|+|+|+.|+||||+++.++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 479999999999999999998764
No 403
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.59 E-value=0.0014 Score=45.98 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
-.|+|.|++|+|||||++.+.+.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 57899999999999999999874
No 404
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.59 E-value=0.0016 Score=47.95 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=22.3
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
....|+|+|++|+|||||+..+.+.
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999874
No 405
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=96.58 E-value=0.0023 Score=50.37 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=28.8
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
..++|+|+|-||+||||++--++..+.+.-..+..++
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID 83 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 83 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4689999999999999999988876655444455553
No 406
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.58 E-value=0.0038 Score=52.28 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=23.7
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
...+|+|+|.+|+||||++..++..+...
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~ 128 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRK 128 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 35689999999999999999999766543
No 407
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.58 E-value=0.002 Score=45.10 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
-.|+|+|++|+|||||+..+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 56899999999999999999863
No 408
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.58 E-value=0.0015 Score=47.11 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.1
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
....|+|+|.+|+|||||+..+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999863
No 409
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.57 E-value=0.002 Score=48.15 Aligned_cols=29 Identities=34% Similarity=0.494 Sum_probs=25.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
..+..|+|.|+.|+||||+++.+...+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35689999999999999999999987764
No 410
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.56 E-value=0.0014 Score=46.30 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
...|+|.|++|+|||||+..+.+.
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999863
No 411
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.56 E-value=0.002 Score=45.70 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.0
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
....|+|+|++|+|||||+..+.+.
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999999863
No 412
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.56 E-value=0.00089 Score=55.09 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.1
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
..+|+|+|++|+||||++..++..+...
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~ 126 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKR 126 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999876543
No 413
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.56 E-value=0.0015 Score=45.64 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
-.|+|.|.+|+|||||++.+.+.
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 414
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.55 E-value=0.01 Score=50.67 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=23.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
+.++|+|++|+||||++..++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~ 231 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL 231 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 689999999999999999999876554
No 415
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.55 E-value=0.0018 Score=45.39 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
.-.|+|.|.+|+|||||+..+.+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35789999999999999999986
No 416
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.53 E-value=0.0016 Score=46.64 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=21.8
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
..-.|+|+|++|+|||||+..+.+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999874
No 417
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.53 E-value=0.0016 Score=45.44 Aligned_cols=22 Identities=32% Similarity=0.282 Sum_probs=19.6
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 039455 51 FIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.|+|.|.+|+|||||+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999763
No 418
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.53 E-value=0.0018 Score=46.52 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=21.9
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
....|+|.|.+|+|||||+..+.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999874
No 419
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=96.52 E-value=0.0016 Score=46.82 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.-.|+|+|.+|+|||||+..+...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 357899999999999999999864
No 420
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.52 E-value=0.0038 Score=54.01 Aligned_cols=37 Identities=27% Similarity=0.145 Sum_probs=25.7
Q ss_pred hHHHHHHHHHhcCCCCeeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 33 SRMEKMNGYLEAGLDDVRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 33 ~~~~~l~~~l~~~~~~~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
...+.+...|... ...+|+||+|+|||+++.+++..+
T Consensus 193 ~Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 193 SQKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp HHHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHHH
Confidence 3445566666532 488999999999997766665543
No 421
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.52 E-value=0.0022 Score=45.03 Aligned_cols=24 Identities=38% Similarity=0.317 Sum_probs=21.3
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
....|+|.|.+|+|||||+..+..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999999976
No 422
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.52 E-value=0.0015 Score=45.71 Aligned_cols=21 Identities=29% Similarity=0.528 Sum_probs=19.0
Q ss_pred EEEEEecCCCcHHHHHHHHHH
Q 039455 51 FIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~ 71 (216)
.|+|.|.+|+|||||++.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999998864
No 423
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.51 E-value=0.0016 Score=46.80 Aligned_cols=25 Identities=24% Similarity=0.244 Sum_probs=21.7
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
..-.|+|.|.+|+|||||+..+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999988763
No 424
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.50 E-value=0.0017 Score=46.89 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=20.8
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
...|+|.|++|+|||||+..+.+.
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999999863
No 425
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.50 E-value=0.0044 Score=45.93 Aligned_cols=28 Identities=39% Similarity=0.580 Sum_probs=24.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
+..|++.|+.|+||||+++.+...+...
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4689999999999999999999987654
No 426
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.50 E-value=0.0017 Score=45.42 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
.-.|+|.|.+|+|||||+..+.+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 35789999999999999999986
No 427
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.50 E-value=0.0068 Score=45.34 Aligned_cols=108 Identities=9% Similarity=-0.005 Sum_probs=52.9
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeeccccccccccCchHHHHHHHHHHHhhcc-ccccchhhhHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLANVREVSVTRGLVPLQEQLLSEVLMERN-LIIWDVHKGINLIRW 126 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~ 126 (216)
.+.+.+++|+-|+||||.+...+.++..+...+..+.-..+ .... . .+...+..... ....+.......+
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D--~Ryg-~----~i~sr~G~~~~a~~i~~~~di~~~~-- 88 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD--TRYS-S----SFCTHDRNTMEALPACLLRDVAQEA-- 88 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC--CCC----------------CEEEEESSGGGGHHHH--
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC--ccch-H----HHHhhcCCeeEEEecCCHHHHHHHh--
Confidence 46899999999999998887777766554333333321111 0111 2 22222211111 1111222222222
Q ss_pred HhCCceEEEEEeCCCCHHHHHHhhcCCCCCCCCcEEEEEeCCc
Q 039455 127 RLCRKRVLVVLDDVDQLEQLQALAGNHDWFGFGSRIIITTRDE 169 (216)
Q Consensus 127 ~l~~~~~llvlDd~~~~~~~~~l~~~~~~~~~~~~il~tsr~~ 169 (216)
+.--+|++|++.-...+.++...+. ..+..+|+|.++.
T Consensus 89 ---~~~dvViIDEaQF~~~v~el~~~l~--~~gi~VI~~GL~~ 126 (234)
T 2orv_A 89 ---LGVAVIGIDEGQFFPDIVEFCEAMA--NAGKTVIVAALDG 126 (234)
T ss_dssp ---TTCSEEEESSGGGCTTHHHHHHHHH--HTTCEEEEECCSB
T ss_pred ---ccCCEEEEEchhhhhhHHHHHHHHH--hCCCEEEEEeccc
Confidence 2334999999853322333333322 2467899999984
No 428
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.49 E-value=0.0014 Score=46.92 Aligned_cols=22 Identities=32% Similarity=0.351 Sum_probs=19.8
Q ss_pred EEEEEecCCCcHHHHHHHHHHH
Q 039455 51 FIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.|+|.|.+|+|||||+..+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5889999999999999999863
No 429
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.49 E-value=0.0016 Score=45.64 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
-.|+|.|++|+|||||+..+.+
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999864
No 430
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.48 E-value=0.0018 Score=45.74 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
-.|+|+|.+|+|||||+..+.+
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5789999999999999999986
No 431
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.46 E-value=0.0021 Score=51.58 Aligned_cols=22 Identities=41% Similarity=0.605 Sum_probs=20.5
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
.+.+|+|++|+|||||++.++.
T Consensus 27 g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 27 GVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCChhHHHHHHHH
Confidence 4999999999999999999985
No 432
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.46 E-value=0.00064 Score=53.31 Aligned_cols=25 Identities=24% Similarity=0.418 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
+..++|.|++|+|||||++.+....
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCEEEEECCCCCCHHHHHHHhcccc
Confidence 4799999999999999999997644
No 433
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.45 E-value=0.0018 Score=46.37 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
...|+|+|.+|+|||||+..+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999863
No 434
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.45 E-value=0.0019 Score=46.07 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=21.8
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
....|+|.|++|+|||||++.+.+.
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999863
No 435
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.44 E-value=0.0019 Score=45.65 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.0
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
....|+|+|.+|+|||||+..+.+.
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3568999999999999999999873
No 436
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=96.44 E-value=0.0019 Score=46.83 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.6
Q ss_pred eeEEEEEecCCCcHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
.-.|+|+|.+|+|||||+..+.+
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999999985
No 437
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=96.44 E-value=0.0016 Score=48.74 Aligned_cols=29 Identities=31% Similarity=0.527 Sum_probs=22.3
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
.+..|+|.|+.|+||||+++.+++.+...
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 46789999999999999999999877643
No 438
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.43 E-value=0.0028 Score=47.06 Aligned_cols=28 Identities=36% Similarity=0.533 Sum_probs=25.1
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhcC
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLKD 75 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~~ 75 (216)
.+..|++.|+.|+||||+++.++..+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3578999999999999999999998865
No 439
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.42 E-value=0.0019 Score=46.51 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.-.|+|+|.+|+|||||+..+.+.
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999873
No 440
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.42 E-value=0.0042 Score=45.70 Aligned_cols=29 Identities=34% Similarity=0.602 Sum_probs=24.6
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcCCCC
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLKDQFE 78 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~ 78 (216)
.-|+|-|+.|+||||+++.++..+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 56889999999999999999998865443
No 441
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.41 E-value=0.0023 Score=48.10 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=22.3
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.....|+|+|.+|+|||||+..+.+.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCC
Confidence 34578999999999999999999873
No 442
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.40 E-value=0.0013 Score=53.84 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=20.9
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
-.|+|+|++|+|||||++.+++..
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCC
Confidence 357999999999999999998743
No 443
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=96.40 E-value=0.022 Score=47.20 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=23.9
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
++..++|.|++|+|||+|+..++..+.
T Consensus 152 kGQr~~Ifgg~G~GKT~L~~~i~~~~~ 178 (482)
T 2ck3_D 152 KGGKIGLFGGAGVGKTVLIMELINNVA 178 (482)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cCCeeeeecCCCCChHHHHHHHHHhhH
Confidence 457999999999999999999998754
No 444
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.40 E-value=0.0025 Score=46.77 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=23.1
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.+|+|.|+.|+||||+++.++.++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg 31 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN 31 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999999764
No 445
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.39 E-value=0.0021 Score=46.45 Aligned_cols=24 Identities=17% Similarity=0.201 Sum_probs=21.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.-.|+|+|++|+|||||+..+.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999874
No 446
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.39 E-value=0.0026 Score=53.61 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=23.7
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
...+|+++|.+|+||||+++.++..+.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 346899999999999999999998764
No 447
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.39 E-value=0.0011 Score=50.75 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.6
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
....|+|.|+.|+||||+++.++..+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 457999999999999999999987653
No 448
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.39 E-value=0.0025 Score=47.76 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHh
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
-.++|.|++|+||||+++.++..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
No 449
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.39 E-value=0.0031 Score=44.54 Aligned_cols=25 Identities=28% Similarity=0.305 Sum_probs=21.6
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
..-.|+|.|.+|+|||||+..+.+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 3467999999999999999999863
No 450
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.37 E-value=0.0022 Score=45.69 Aligned_cols=25 Identities=24% Similarity=0.501 Sum_probs=21.9
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
..-.|+|+|.+|+|||||+..+.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4568899999999999999999864
No 451
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.37 E-value=0.0022 Score=45.50 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
...|+|+|.+|+|||||+..+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999999863
No 452
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.37 E-value=0.0026 Score=45.45 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.-.|+|.|.+|+|||||+..+.+.
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 357899999999999999999863
No 453
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.37 E-value=0.0022 Score=50.15 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=22.3
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
....|+|+|.+|+|||||++.+.+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 3568999999999999999999874
No 454
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.37 E-value=0.0023 Score=46.18 Aligned_cols=24 Identities=17% Similarity=0.275 Sum_probs=21.5
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.-.|+|+|.+|+|||||+..+.+.
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999999864
No 455
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.36 E-value=0.0022 Score=45.62 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
...|+|+|.+|+|||||+..+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 467999999999999999999863
No 456
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=96.36 E-value=0.022 Score=47.38 Aligned_cols=37 Identities=32% Similarity=0.357 Sum_probs=28.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcC-CCCceEee
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKD-QFEASSFL 83 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~-~~~~~~~~ 83 (216)
.++..++|.|++|+|||+|+..++..+.. +....++.
T Consensus 163 gkGqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~ 200 (498)
T 1fx0_B 163 RRGGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 200 (498)
T ss_dssp CTTCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred ccCCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE
Confidence 35678999999999999999999987543 33344444
No 457
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=96.36 E-value=0.0031 Score=46.19 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=22.1
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
..-.|+|+|.+|+|||||+..+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999873
No 458
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.36 E-value=0.0023 Score=45.37 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.-.|+|.|.+|+|||||+..+.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457899999999999999999863
No 459
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.36 E-value=0.0016 Score=46.19 Aligned_cols=24 Identities=21% Similarity=0.293 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.-.|+|.|.+|+|||+|+..+.+.
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999873
No 460
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.35 E-value=0.0025 Score=45.11 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.7
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
+....|+|.|.+|+|||||+..+.+
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCS
T ss_pred CcceEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999875
No 461
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.35 E-value=0.0025 Score=46.40 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
...|+|.|++|+|||||++.+.+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35789999999999999999864
No 462
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.34 E-value=0.0021 Score=46.24 Aligned_cols=25 Identities=36% Similarity=0.268 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHh
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTL 73 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~ 73 (216)
.-.|+|.|.+|+|||||++.+.+..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4579999999999999997776643
No 463
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.34 E-value=0.0031 Score=45.82 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.0
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
....|+|.|.+|+|||||+..+.+.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4568999999999999999999874
No 464
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=96.33 E-value=0.0032 Score=45.24 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.8
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
..-.|+|+|.+|+|||||+..+.+.
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 3468999999999999999999863
No 465
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.33 E-value=0.0036 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=21.8
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
....|+|.|.+|+|||||+..+.+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999999863
No 466
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.33 E-value=0.0025 Score=45.28 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
...|+|.|.+|+|||||+..+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 46899999999999999999985
No 467
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.33 E-value=0.0025 Score=46.62 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
...|+|+|.+|+|||||++.+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 468999999999999999998863
No 468
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=96.33 E-value=0.0032 Score=44.82 Aligned_cols=23 Identities=26% Similarity=0.248 Sum_probs=20.7
Q ss_pred eeEEEEEecCCCcHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
.-.|+|.|.+|+|||||+..+.+
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 45789999999999999999986
No 469
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.0024 Score=46.18 Aligned_cols=25 Identities=24% Similarity=0.388 Sum_probs=21.9
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
..-.|+|.|.+|+|||||+..+.+.
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999873
No 470
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.32 E-value=0.0025 Score=45.85 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.-.|+|.|.+|+|||||+..+.+.
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcC
Confidence 357999999999999999999874
No 471
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.32 E-value=0.0031 Score=54.13 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=24.4
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
.+..|+|+|++|+||||+++.++.++.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 567999999999999999999998764
No 472
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.32 E-value=0.0025 Score=45.92 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=19.2
Q ss_pred EEEEecCCCcHHHHHHHHHHH
Q 039455 52 IGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 52 i~I~G~~GiGKTtL~~~~~~~ 72 (216)
+.|+|++|+|||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999865
No 473
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.32 E-value=0.0025 Score=45.26 Aligned_cols=24 Identities=25% Similarity=0.199 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.-.|+|.|.+|+|||||+..+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357899999999999999998863
No 474
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.32 E-value=0.0049 Score=51.69 Aligned_cols=38 Identities=8% Similarity=-0.038 Sum_probs=29.8
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCC-CCceEeec
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQ-FEASSFLA 84 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~-~~~~~~~~ 84 (216)
..+..+.|.|++|+|||+|+..++...... -..+.|++
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 356799999999999999999999876543 34566664
No 475
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.31 E-value=0.0024 Score=52.41 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
+...+|+|++|+|||||+..++.
T Consensus 26 ~~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 26 SNFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999999986
No 476
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.31 E-value=0.0025 Score=45.77 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.-.|+|+|.+|+|||||+..+.+.
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999864
No 477
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.30 E-value=0.0023 Score=45.58 Aligned_cols=25 Identities=36% Similarity=0.329 Sum_probs=21.5
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
.....|+|.|++|+|||||+..+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999988864
No 478
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.30 E-value=0.0017 Score=51.25 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=20.2
Q ss_pred eEEEEEecCCCcHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
...+|+|++|+|||+|++.++.
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 4899999999999999999983
No 479
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=96.29 E-value=0.0026 Score=45.73 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.-.|+|+|.+|+|||||+..+.+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999863
No 480
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.28 E-value=0.004 Score=44.88 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.4
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
....|+|+|.+|+|||||+..+.+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 346899999999999999999986
No 481
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=96.27 E-value=0.0038 Score=45.37 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.2
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
....|+|.|.+|+|||||+..+.+.
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 4578999999999999999999873
No 482
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=96.27 E-value=0.00096 Score=50.00 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=21.9
Q ss_pred EEEEEecCCCcHHHHHHHHHHHhcCC
Q 039455 51 FIGICGMGGIGKTTLAKVLYNTLKDQ 76 (216)
Q Consensus 51 ~i~I~G~~GiGKTtL~~~~~~~~~~~ 76 (216)
+++|+||+|+|||||++.++..+...
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~ 54 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPD 54 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcccccC
Confidence 45688999999999999999876543
No 483
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.27 E-value=0.0027 Score=45.75 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.-.|+|+|.+|+|||||+..+.+.
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999999863
No 484
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.26 E-value=0.0028 Score=46.19 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=21.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
...|+|.|.+|+|||||+..+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999863
No 485
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=96.25 E-value=0.0028 Score=45.71 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.9
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
..-.|+|+|.+|+|||||+..+.+.
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3468999999999999999999874
No 486
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.25 E-value=0.0028 Score=45.62 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=21.9
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
..-.|+|.|++|+|||||+..+.+.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999873
No 487
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.24 E-value=0.0037 Score=44.76 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.0
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
.....|+|.|.+|+|||||+..+.+
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999999985
No 488
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=96.23 E-value=0.0025 Score=46.28 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=21.2
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.-.|+|+|.+|+|||||+..+.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999863
No 489
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.22 E-value=0.0029 Score=45.93 Aligned_cols=25 Identities=20% Similarity=0.297 Sum_probs=21.5
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
....|+|.|.+|+|||||+..+.+.
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3478999999999999999999863
No 490
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=96.22 E-value=0.0029 Score=46.40 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
...|+|+|.+|+|||||+..+.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999863
No 491
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=96.22 E-value=0.0028 Score=45.99 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=20.9
Q ss_pred CeeEEEEEecCCCcHHHHHHHHHH
Q 039455 48 DVRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 48 ~~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
....|+|+|.+|+|||||++.+.+
T Consensus 22 ~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 22 GIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999999853
No 492
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.22 E-value=0.005 Score=48.05 Aligned_cols=38 Identities=21% Similarity=0.292 Sum_probs=28.6
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
...++|+|+|-||+||||++..++..+.+.-..+..++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35678888899999999999999987665544455543
No 493
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.22 E-value=0.0032 Score=48.30 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=21.0
Q ss_pred eEEEEEecCCCcHHHHHHHHHHH
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
..|+|.|++|+|||||+..+.+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999874
No 494
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.21 E-value=0.0041 Score=44.62 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=21.0
Q ss_pred eeEEEEEecCCCcHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
...|+|+|.+|+|||||+..+..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 46899999999999999999986
No 495
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.21 E-value=0.006 Score=46.49 Aligned_cols=35 Identities=31% Similarity=0.430 Sum_probs=26.7
Q ss_pred eEEEEEecCCCcHHHHHHHHHHHhcCCCCceEeec
Q 039455 50 RFIGICGMGGIGKTTLAKVLYNTLKDQFEASSFLA 84 (216)
Q Consensus 50 ~~i~I~G~~GiGKTtL~~~~~~~~~~~~~~~~~~~ 84 (216)
++|+|.|-||+||||++..++..+.+....+..++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 46777899999999999999987765544455543
No 496
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.21 E-value=0.0033 Score=50.62 Aligned_cols=23 Identities=22% Similarity=0.479 Sum_probs=20.9
Q ss_pred eeEEEEEecCCCcHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
....+|+|++|+|||+++.+++-
T Consensus 25 ~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 37899999999999999999874
No 497
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=96.20 E-value=0.0031 Score=45.31 Aligned_cols=24 Identities=29% Similarity=0.356 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
.-.|+|+|.+|+|||||+..+.+.
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 358999999999999999999874
No 498
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=96.20 E-value=0.0026 Score=45.40 Aligned_cols=24 Identities=25% Similarity=0.256 Sum_probs=21.4
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHH
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNT 72 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~ 72 (216)
...|+|+|.+|+|||||+..+.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 468999999999999999999863
No 499
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=96.19 E-value=0.0037 Score=45.10 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=21.8
Q ss_pred CCeeEEEEEecCCCcHHHHHHHHHH
Q 039455 47 DDVRFIGICGMGGIGKTTLAKVLYN 71 (216)
Q Consensus 47 ~~~~~i~I~G~~GiGKTtL~~~~~~ 71 (216)
.....|+|+|.+|+|||||+..+.+
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999875
No 500
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.19 E-value=0.0049 Score=46.02 Aligned_cols=26 Identities=27% Similarity=0.160 Sum_probs=23.3
Q ss_pred eeEEEEEecCCCcHHHHHHHHHHHhc
Q 039455 49 VRFIGICGMGGIGKTTLAKVLYNTLK 74 (216)
Q Consensus 49 ~~~i~I~G~~GiGKTtL~~~~~~~~~ 74 (216)
..+|+|.|+.|+||||+++.++.++.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 47999999999999999999998653
Done!