BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039457
(260 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SPS|A Chain A, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
pdb|3SPS|B Chain B, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
pdb|3SPS|C Chain C, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
pdb|3SPS|D Chain D, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
pdb|3SPS|E Chain E, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
pdb|3SPS|F Chain F, Crystal Structure Of Apo-Hexameric Acyl-Coa Thioesterase
Length = 169
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 8/71 (11%)
Query: 156 GKLLEDLDALAGTISYKHCCNDDGATRPILLVTASVDRMVVKKPIRVDIDLELTGAVTWV 215
GK+L +D +A + KH + +VTAS+D + K V LEL G VT
Sbjct: 44 GKVLAYIDEIAALTAMKHANS--------AVVTASIDSVDFKSSATVGDALELEGFVTHT 95
Query: 216 GRSSMEIQLEV 226
GR+SME+ + V
Sbjct: 96 GRTSMEVYVRV 106
>pdb|1VPM|A Chain A, Crystal Structure Of Acyl-Coa Hydrolase (Np_241664.1) From
Bacillus Halodurans At 1.66 A Resolution
pdb|1VPM|B Chain B, Crystal Structure Of Acyl-Coa Hydrolase (Np_241664.1) From
Bacillus Halodurans At 1.66 A Resolution
pdb|1VPM|C Chain C, Crystal Structure Of Acyl-Coa Hydrolase (Np_241664.1) From
Bacillus Halodurans At 1.66 A Resolution
Length = 169
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 156 GKLLEDLDALAGTISYKHCCNDDGATRPILLVTASVDRMVVKKPIRVDIDLELTGAVTWV 215
GK+L +D +A + KH + +VTAS+D + K V LEL G VT
Sbjct: 44 GKVLAYIDEIAALTAXKHANS--------AVVTASIDSVDFKSSATVGDALELEGFVTHT 95
Query: 216 GRSSMEIQLEV 226
GR+S E+ + V
Sbjct: 96 GRTSXEVYVRV 106
>pdb|4IEN|A Chain A, Crystal Structure Of Acyl-coa Hydrolase From Neisseria
Meningitidis Fam18
pdb|4IEN|B Chain B, Crystal Structure Of Acyl-coa Hydrolase From Neisseria
Meningitidis Fam18
pdb|4IEN|C Chain C, Crystal Structure Of Acyl-coa Hydrolase From Neisseria
Meningitidis Fam18
pdb|4IEN|D Chain D, Crystal Structure Of Acyl-coa Hydrolase From Neisseria
Meningitidis Fam18
Length = 163
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 8/71 (11%)
Query: 156 GKLLEDLDALAGTISYKHCCNDDGATRPILLVTASVDRMVVKKPIRVDIDLELTGAVTWV 215
G+LL LD +A + + ++ N VT SVD+++ K+PI + + AV +
Sbjct: 35 GELLLLLDQVAYSCASRYSGN--------YCVTLSVDKVLFKEPIHIGDLVTFYAAVNYT 86
Query: 216 GRSSMEIQLEV 226
GR+SMEI + V
Sbjct: 87 GRTSMEIGIRV 97
>pdb|2Q2B|A Chain A, Crystal Structure Of The C-Terminal Domain Of Mouse
Acyl-Coa Thioesterase 7
pdb|2Q2B|B Chain B, Crystal Structure Of The C-Terminal Domain Of Mouse
Acyl-Coa Thioesterase 7
Length = 179
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 156 GKLLEDLDALAGTISYKHCCNDDGATRPILLVTASVDRMVVKKPIRVDIDLELTGAVTWV 215
G ++ +D +AG ++ +HC + +VTASVD + IR + ++G +T+
Sbjct: 47 GVTMKLMDEVAGIVAARHCKTN--------IVTASVDAINFHDKIRKGCVITISGRMTFT 98
Query: 216 GRSSMEIQLEV 226
SMEI++ V
Sbjct: 99 SNKSMEIEVLV 109
>pdb|2QQ2|A Chain A, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|B Chain B, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|C Chain C, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|D Chain D, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|E Chain E, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|F Chain F, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|G Chain G, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|H Chain H, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|I Chain I, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|J Chain J, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|K Chain K, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|L Chain L, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
Length = 193
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 156 GKLLEDLDALAGTISYKHCCNDDGATRPILLVTASVDRMVVKKPIRVDIDLELTGAVTWV 215
G ++ +D +AG ++ +HC + +VTASVD + IR + ++G +T+
Sbjct: 63 GVTMKLMDEVAGIVAARHCKTN--------IVTASVDAINFHDKIRKGCVITISGRMTFT 114
Query: 216 GRSSMEIQLEV 226
SMEI++ V
Sbjct: 115 SNKSMEIEVLV 125
>pdb|3D6L|A Chain A, Crystal Structure Of Cj0915, A Hexameric Hotdog Fold
Thioesterase Of Campylobacter Jejuni
Length = 137
Score = 35.0 bits (79), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 148 NPWNEMRMGKLLEDLDALAGTISYKHCCNDDGATRPILLVTASVDRMVVKKPIRVDIDLE 207
NP + G +L +D LAG I+ + P +VT S+D++V K+P+ + +
Sbjct: 19 NPAGNIFGGWILSQID-LAGAIAARE-------LSPERVVTISMDKVVFKEPVFIGDIIS 70
Query: 208 LTGAVTWVGRSSMEIQLEVT 227
V VG +S+ +++EVT
Sbjct: 71 CYSKVVNVGNTSISVEVEVT 90
>pdb|1Y7U|A Chain A, Crystal Structure Of Acyl-Coa Hydrolase From Bacillus
Cereus
pdb|1Y7U|B Chain B, Crystal Structure Of Acyl-Coa Hydrolase From Bacillus
Cereus
pdb|1Y7U|C Chain C, Crystal Structure Of Acyl-Coa Hydrolase From Bacillus
Cereus
Length = 174
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 8/79 (10%)
Query: 148 NPWNEMRMGKLLEDLDALAGTISYKHCCNDDGATRPILLVTASVDRMVVKKPIRVDIDLE 207
N N + GK+L + D +A + +H + VTAS D + P+R +
Sbjct: 32 NDHNTLFGGKILSEXDXVASISASRHSRKE--------CVTASXDWVDFLHPVRSSDCVS 83
Query: 208 LTGAVTWVGRSSMEIQLEV 226
V W GR+S E+ ++V
Sbjct: 84 YESFVIWTGRTSXEVFVKV 102
>pdb|3B7K|A Chain A, Human Acyl-Coenzyme A Thioesterase 12
pdb|3B7K|B Chain B, Human Acyl-Coenzyme A Thioesterase 12
pdb|3B7K|C Chain C, Human Acyl-Coenzyme A Thioesterase 12
Length = 333
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 151 NEMRMGKLLEDLDALAGTISYKHCCNDDGATRPILLVTASVDRMVVKKPIRVDIDLELTG 210
E+ G+LL+ +D A + KH + VTASVD + ++ RV + +
Sbjct: 41 GELSAGQLLKWIDTTACLAAEKHA--------GVSCVTASVDDIQFEETARVGQVITIKA 92
Query: 211 AVTWVGRSSMEIQLEVTQSTQGTPYESRVFV-FLAFWA 247
VT +SMEI ++V T E V V F F A
Sbjct: 93 KVTRAFSTSMEISIKVMVQDMLTGIEKLVSVAFSTFVA 130
>pdb|3BJK|A Chain A, Crystal Structure Of Hi0827, A Hexameric Broad Specificity
Acyl- Coenzyme A Thioesterase: The Asp44ala Mutant
Enzyme
pdb|3BJK|B Chain B, Crystal Structure Of Hi0827, A Hexameric Broad Specificity
Acyl- Coenzyme A Thioesterase: The Asp44ala Mutant
Enzyme
pdb|3BJK|C Chain C, Crystal Structure Of Hi0827, A Hexameric Broad Specificity
Acyl- Coenzyme A Thioesterase: The Asp44ala Mutant
Enzyme
pdb|3BJK|D Chain D, Crystal Structure Of Hi0827, A Hexameric Broad Specificity
Acyl- Coenzyme A Thioesterase: The Asp44ala Mutant
Enzyme
pdb|3BJK|E Chain E, Crystal Structure Of Hi0827, A Hexameric Broad Specificity
Acyl- Coenzyme A Thioesterase: The Asp44ala Mutant
Enzyme
pdb|3BJK|F Chain F, Crystal Structure Of Hi0827, A Hexameric Broad Specificity
Acyl- Coenzyme A Thioesterase: The Asp44ala Mutant
Enzyme
Length = 153
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 186 LVTASVDRMVVKKPIRVDIDLELTGAVTWVGRSSMEIQLEV-TQSTQGTPYESR------ 238
+VT +V+ M KPI V + G VGRSS++I++EV + P R
Sbjct: 58 VVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKKVASEPIGERYCVTDA 117
Query: 239 VFVFLA 244
VF F+A
Sbjct: 118 VFTFVA 123
>pdb|1YLI|A Chain A, Crystal Structure Of Hi0827, A Hexameric Broad Specificity
Acyl- Coenzyme A Thioesterase
pdb|1YLI|B Chain B, Crystal Structure Of Hi0827, A Hexameric Broad Specificity
Acyl- Coenzyme A Thioesterase
Length = 153
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 186 LVTASVDRMVVKKPIRVDIDLELTGAVTWVGRSSMEIQLEV-TQSTQGTPYESR------ 238
+VT +V+ M KPI V + G VGRSS++I++EV + P R
Sbjct: 58 VVTVAVESMNFIKPISVGDVVCCYGQCLKVGRSSIKIKVEVWVKKVASEPIGERYCVTDA 117
Query: 239 VFVFLA 244
VF F+A
Sbjct: 118 VFTFVA 123
>pdb|3VAC|A Chain A, Crystal Structure Of The Cfa/i Enterotoxigenic E. Coli
Adhesin Cfae Mutant G168d
pdb|3VAC|B Chain B, Crystal Structure Of The Cfa/i Enterotoxigenic E. Coli
Adhesin Cfae Mutant G168d
Length = 356
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 197 KKPIRVDIDLELTGAVTWVGRSSMEIQLEVTQSTQGTPYESR 238
K RVD++L TG T++GR+S+++ ST + E R
Sbjct: 190 KSNARVDLNLRPTGGGTYIGRNSVDMCFYDGYSTNSSSLEIR 231
>pdb|2HB0|A Chain A, Crystal Structure Of Cfae, The Adhesive Subunit Of CfaI
Fimbria Of Enterotoxigenic Escherichia Coli
pdb|2HB0|B Chain B, Crystal Structure Of Cfae, The Adhesive Subunit Of CfaI
Fimbria Of Enterotoxigenic Escherichia Coli
Length = 369
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 197 KKPIRVDIDLELTGAVTWVGRSSMEIQLEVTQSTQGTPYESR 238
K RVD++L TG T++GR+S+++ ST + E R
Sbjct: 190 KSNARVDLNLRPTGGGTYIGRNSVDMCFYDGYSTNSSSLEIR 231
>pdb|2V1O|A Chain A, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
pdb|2V1O|B Chain B, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
pdb|2V1O|C Chain C, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
pdb|2V1O|D Chain D, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
pdb|2V1O|E Chain E, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
pdb|2V1O|F Chain F, Crystal Structure Of N-Terminal Domain Of Acyl-Coa
Thioesterase 7
Length = 151
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 148 NPWNEMRMGKLLEDLDALAGTISYKHCCNDDGATRPILLVTASVDRMVVKKPIRVDIDLE 207
N + G +L+ ++ IS +HC + +G + A V+R P+ +
Sbjct: 12 NVAGNVHGGTILKMIEEAGAIISTRHCNSQNG--ERCVAALARVERTDFLSPMCIGEVAH 69
Query: 208 LTGAVTWVGRSSMEIQLEV 226
++ +T+ + S+E+Q+ V
Sbjct: 70 VSAEITYTSKHSVEVQVHV 88
>pdb|2GVH|A Chain A, Crystal Structure Of Acyl-Coa Hydrolase (15159470) From
Agrobacterium Tumefaciens At 2.65 A Resolution
pdb|2GVH|B Chain B, Crystal Structure Of Acyl-Coa Hydrolase (15159470) From
Agrobacterium Tumefaciens At 2.65 A Resolution
pdb|2GVH|C Chain C, Crystal Structure Of Acyl-Coa Hydrolase (15159470) From
Agrobacterium Tumefaciens At 2.65 A Resolution
Length = 288
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 186 LVTASVDRMVVKKPIRVDIDLELTGAVTWVGRSSMEIQLEVTQST 230
VTAS +R+ ++P R+ +E T GR S+ +++E T
Sbjct: 71 FVTASCERIDFRQPARIGHIVEFTARPVKAGRRSLTVEVEXVAET 115
>pdb|3F83|A Chain A, Structure Of Fusion Complex Of The Minor Pilin Cfae And
Major Pilin Cfab Of CfaI PILI FROM ETEC E. COLI
Length = 519
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 197 KKPIRVDIDLELTGAVTWVGRSSMEIQLEVTQSTQGTPYESR 238
K RVD++L TG T++GR+S+++ ST + E R
Sbjct: 190 KSNARVDLNLRPTGGGTYIGRNSVDMCFYDGYSTNSSSLEIR 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,186,749
Number of Sequences: 62578
Number of extensions: 210158
Number of successful extensions: 380
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 368
Number of HSP's gapped (non-prelim): 16
length of query: 260
length of database: 14,973,337
effective HSP length: 97
effective length of query: 163
effective length of database: 8,903,271
effective search space: 1451233173
effective search space used: 1451233173
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)