BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039458
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
Length = 219
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 11 RLLCAIFFTPIFVVGIIFLILWLSLRPHHPKFHVKQFTLQGLGQTTGY-----LNVNVTV 65
R C + IF G+ L LWLSLR PK ++ F + LG+ LN V
Sbjct: 12 RNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALGKDPNSRDNTTLNFMVRC 71
Query: 66 RNPSHRVRICYDSM 79
NP+ I YD +
Sbjct: 72 DNPNKDKGIYYDDV 85
>sp|Q9C615|SYP24_ARATH Putative syntaxin-24 OS=Arabidopsis thaliana GN=SYP24 PE=3 SV=1
Length = 416
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Query: 35 LRPHHPKFHV-----KQFTLQGLGQTTGYLNVNVTVRNPSHRVRICYDSMRGSVYYKDQR 89
+R + KF V F L+ L++N+++RN + I YD +VYY +QR
Sbjct: 2 VRSNDVKFQVYDAELTHFDLESNNNLQYSLSLNLSIRNSKSSIGIHYDRFEATVYYMNQR 61
Query: 90 VGVVSVFESHYQEPKNTTILHYVYNEPLTLTTQASNNQRTIE 131
+G V + Y KNT +L ++ E TL N ++ E
Sbjct: 62 LGAVPM-PLFYLGSKNTMLLRALF-EGQTLVLLKGNERKKFE 101
>sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160 OS=Arabidopsis thaliana
GN=At1g08160 PE=2 SV=1
Length = 221
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 21/144 (14%)
Query: 30 ILWLSLRPHHPKFHVKQFTLQ--GLGQTTGYLNVN----VTVRNPSHRVRICYDSMRGSV 83
I +L+LRP + V+ ++Q +G ++N + NP V + Y SMR S
Sbjct: 57 ITYLTLRPKRLIYTVEAASVQEFAIGNNDDHINAKFSYVIKSYNPEKHVSVRYHSMRIST 116
Query: 84 YYKDQRVG--VVSVFESHYQEPKNTT-ILHYVYNEPLTLTT------QASNNQRTIEI-- 132
+ +Q V +S F+ Q PKN T I + + + L+ +A ++ TIE+
Sbjct: 117 AHHNQSVAHKNISPFK---QRPKNETRIETQLVSHNVALSKFNARDLRAEKSKGTIEMEV 173
Query: 133 -MNDLIKYKGSMWDKRSHRMRATC 155
+ + YK ++ R ++A C
Sbjct: 174 YITARVSYKTWIFRSRRRTLKAVC 197
>sp|P15321|HLYB_SERMA Hemolysin transporter protein ShlB OS=Serratia marcescens GN=shlB
PE=1 SV=1
Length = 557
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 59 LNVNVTVRNPSHRVRICYDSMRGSVY--YKDQRVGVVSVFESHYQEPKNTTILH 110
LN N T+ NP+HR Y + Y + S +E+H Q P N LH
Sbjct: 260 LNANSTLENPAHRYNRAYTLLYSLPYGAFTFSGFASFSSYENHQQLPHNVVKLH 313
>sp|P41515|TOP2A_CRIGR DNA topoisomerase 2-alpha OS=Cricetulus griseus GN=TOP2A PE=1 SV=1
Length = 1526
Score = 30.8 bits (68), Expect = 5.4, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 23/128 (17%)
Query: 32 WLSLRPHHPKFHVKQFTLQGLGQTTGYLNVNVTVRNPSHRVRICY----DSMRGSVYYKD 87
W S P+H K+ VK + +GLG +T HR++ Y D S+ +
Sbjct: 597 WKSSTPNHKKWKVKYY--KGLGTSTSKEAKEYFADMKRHRIQFKYSGPEDDAAISLAFSK 654
Query: 88 QRVGVVSVFESHYQEPKNTTIL-----HYVYNEPLTLTT------------QASNNQRTI 130
++V + +H+ E + L Y+Y + T T S+N+R+I
Sbjct: 655 KQVDDRKEWLTHFMEDRRQRKLLGLPEDYLYGQTTTYLTYNDFINKELILFSNSDNERSI 714
Query: 131 EIMNDLIK 138
M D +K
Sbjct: 715 PSMVDGLK 722
>sp|P32326|URER_ECOLX Urease operon transcriptional activator OS=Escherichia coli GN=ureR
PE=4 SV=1
Length = 296
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 79 MRGSVYY-----KDQRVGVVSVFESHYQEPKNTTILHYVYNEP 116
M+ S+Y+ + + ++++F +Y EPKN I H + EP
Sbjct: 139 MKQSLYFILMAIYQEGIDILNLFRFNYDEPKNQAITHLITQEP 181
>sp|A0Q0X7|RNH2_CLONN Ribonuclease HII OS=Clostridium novyi (strain NT) GN=rnhB PE=3 SV=1
Length = 269
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 131 EIMNDLIKYKGSMWDKRSHRMRATCNVGVGPNGVILAKYKDRQCHVH 177
EI ++ I KG W R+ CN+ V P+ V+ YK + C ++
Sbjct: 146 EISSEEIDEKGIAWCNNEVLKRSVCNLKVDPDLVLSDGYKIKNCTIN 192
>sp|O57422|OPN4B_XENLA Melanopsin-B OS=Xenopus laevis GN=opn4b PE=2 SV=1
Length = 534
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 6 RSFSCRLLCAIFFTPIFVVGIIFLILWLSLR 36
RS++ L C +FF P+ V+ +L ++L++R
Sbjct: 190 RSYTMMLCCCVFFIPLIVISHCYLFMFLAIR 220
>sp|O46374|TOP2A_PIG DNA topoisomerase 2-alpha OS=Sus scrofa GN=TOP2A PE=2 SV=1
Length = 1533
Score = 30.0 bits (66), Expect = 7.8, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 23/128 (17%)
Query: 32 WLSLRPHHPKFHVKQFTLQGLGQTTGYLNVNVTVRNPSHRVRICY----DSMRGSVYYKD 87
W S P+H K+ VK + +GLG +T HR++ Y D S+ +
Sbjct: 598 WKSSTPNHKKWKVKYY--KGLGTSTSKEAKEYFADMKRHRIQFKYSGPEDDAAISLAFSK 655
Query: 88 QRVGVVSVFESHYQEPKNTTIL-----HYVYNEPLTLTT------------QASNNQRTI 130
+++ + +H+ E + L Y+Y + T T S+N+R+I
Sbjct: 656 KQIDDRKEWLTHFMEDRRQRKLLGLPEDYLYGQTTTYLTYNDFINKELILFSNSDNERSI 715
Query: 131 EIMNDLIK 138
M D +K
Sbjct: 716 PSMVDGLK 723
>sp|Q804X9|OPN4A_GADMO Melanopsin-A OS=Gadus morhua GN=opn4a PE=2 SV=1
Length = 561
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 6 RSFSCRLLCAIFFTPIFVVGIIFLILWLSLR 36
RS++ L C +FF P+ ++ +L ++L++R
Sbjct: 193 RSYTMMLCCFVFFIPLAIISYCYLFMFLAIR 223
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,449,366
Number of Sequences: 539616
Number of extensions: 2499152
Number of successful extensions: 7242
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 7234
Number of HSP's gapped (non-prelim): 17
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)