Query 039458
Match_columns 179
No_of_seqs 131 out of 768
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 09:50:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.1E-33 2.5E-38 224.0 21.9 168 5-179 32-218 (219)
2 PF03168 LEA_2: Late embryogen 99.3 3.3E-11 7.1E-16 83.5 8.5 66 62-132 1-66 (101)
3 smart00769 WHy Water Stress an 98.6 1.2E-06 2.6E-11 61.2 10.1 72 57-135 15-87 (100)
4 COG5608 LEA14-like dessication 97.9 0.0013 2.9E-08 48.9 13.9 99 38-141 31-132 (161)
5 PF07092 DUF1356: Protein of u 97.4 0.0018 3.9E-08 51.8 10.2 96 10-111 75-177 (238)
6 PF12751 Vac7: Vacuolar segreg 97.1 0.002 4.4E-08 54.7 7.2 34 58-92 349-382 (387)
7 PLN03160 uncharacterized prote 95.8 0.038 8.3E-07 43.9 7.0 98 2-107 32-146 (219)
8 COG4698 Uncharacterized protei 88.9 0.37 8.1E-06 37.0 2.6 47 1-49 1-48 (197)
9 PF14155 DUF4307: Domain of un 87.4 8.3 0.00018 27.3 8.9 66 27-98 18-86 (112)
10 COG2332 CcmE Cytochrome c-type 87.1 6.6 0.00014 29.4 8.1 38 57-94 70-108 (153)
11 TIGR02588 conserved hypothetic 85.6 2.3 5.1E-05 30.7 5.0 52 19-72 11-64 (122)
12 PF06072 Herpes_US9: Alphaherp 81.5 0.57 1.2E-05 29.3 0.4 8 4-11 26-33 (60)
13 PRK10893 lipopolysaccharide ex 76.0 15 0.00033 28.5 7.0 20 36-55 37-56 (192)
14 PRK05529 cell division protein 68.0 11 0.00023 30.6 4.7 17 61-78 112-128 (255)
15 PF09624 DUF2393: Protein of u 59.0 57 0.0012 23.8 6.8 63 27-93 33-97 (149)
16 PF13473 Cupredoxin_1: Cupredo 55.7 11 0.00024 25.8 2.4 32 40-71 18-55 (104)
17 PRK13150 cytochrome c-type bio 54.5 93 0.002 23.6 9.2 30 59-88 78-107 (159)
18 PRK06531 yajC preprotein trans 53.3 6.7 0.00014 28.0 0.9 11 29-39 14-24 (113)
19 TIGR03726 strep_RK_lipo putati 50.6 13 0.00028 20.6 1.5 20 5-24 4-23 (34)
20 COG1589 FtsQ Cell division sep 46.7 18 0.00039 29.4 2.6 62 21-83 39-132 (269)
21 PF06092 DUF943: Enterobacteri 46.2 13 0.00028 28.1 1.5 17 21-37 12-28 (157)
22 PF15012 DUF4519: Domain of un 46.0 24 0.00053 21.8 2.4 17 22-38 40-56 (56)
23 PF08693 SKG6: Transmembrane a 45.8 6.2 0.00013 22.8 -0.2 27 11-37 12-38 (40)
24 PF08113 CoxIIa: Cytochrome c 45.1 11 0.00024 20.7 0.8 14 20-33 11-24 (34)
25 COG5353 Uncharacterized protei 44.8 15 0.00033 27.5 1.7 28 11-38 7-34 (161)
26 PF10907 DUF2749: Protein of u 44.7 30 0.00065 22.1 2.8 14 25-38 15-28 (66)
27 PF09911 DUF2140: Uncharacteri 44.6 34 0.00074 26.4 3.7 29 10-40 3-31 (187)
28 PHA02844 putative transmembran 43.7 26 0.00057 23.0 2.5 7 27-33 63-69 (75)
29 PRK13165 cytochrome c-type bio 43.5 1.4E+02 0.0031 22.6 8.1 12 123-134 134-145 (160)
30 PRK13183 psbN photosystem II r 42.4 37 0.0008 20.1 2.7 22 16-37 11-32 (46)
31 PF04478 Mid2: Mid2 like cell 42.4 22 0.00047 26.7 2.2 23 20-42 60-82 (154)
32 PF11837 DUF3357: Domain of un 41.0 9 0.00019 26.8 0.0 20 11-30 29-48 (106)
33 PRK13254 cytochrome c-type bio 40.3 1.5E+02 0.0033 22.0 6.7 9 79-87 82-90 (148)
34 PF09604 Potass_KdpF: F subuni 39.8 12 0.00026 19.3 0.3 20 20-39 5-24 (25)
35 PF02468 PsbN: Photosystem II 38.6 35 0.00076 20.0 2.2 22 16-37 8-29 (43)
36 PF03100 CcmE: CcmE; InterPro 38.5 60 0.0013 23.4 4.0 7 81-87 84-90 (131)
37 PF14927 Neurensin: Neurensin 38.3 35 0.00075 25.3 2.7 18 14-31 47-64 (140)
38 CHL00020 psbN photosystem II p 37.7 44 0.00096 19.5 2.5 22 16-37 8-29 (43)
39 PF11906 DUF3426: Protein of u 37.4 1.6E+02 0.0034 21.3 8.7 37 57-94 68-105 (149)
40 PRK07021 fliL flagellar basal 37.0 1.2E+02 0.0025 22.7 5.5 18 73-90 77-94 (162)
41 PF12505 DUF3712: Protein of u 36.7 1.1E+02 0.0023 21.7 5.1 23 59-82 102-124 (125)
42 PF15145 DUF4577: Domain of un 36.4 39 0.00085 24.0 2.6 26 12-37 63-88 (128)
43 PRK13159 cytochrome c-type bio 36.1 1.9E+02 0.0041 21.8 7.2 12 123-134 127-138 (155)
44 PF06024 DUF912: Nucleopolyhed 34.4 67 0.0015 22.2 3.6 22 15-36 66-88 (101)
45 TIGR02115 potass_kdpF K+-trans 33.8 8.8 0.00019 20.0 -0.7 19 21-39 5-23 (26)
46 COG1580 FliL Flagellar basal b 33.0 1.6E+02 0.0035 22.1 5.7 18 18-35 25-42 (159)
47 PRK05886 yajC preprotein trans 33.0 17 0.00036 25.8 0.3 13 27-39 14-26 (109)
48 PF11807 DUF3328: Domain of un 32.3 26 0.00057 26.5 1.4 11 3-13 3-13 (217)
49 PF11395 DUF2873: Protein of u 31.4 19 0.0004 20.4 0.3 15 22-36 19-33 (43)
50 PF05545 FixQ: Cbb3-type cytoc 31.3 19 0.0004 21.3 0.3 15 25-39 20-34 (49)
51 PF05966 Chordopox_A33R: Chord 31.2 16 0.00035 28.4 0.0 83 6-89 37-123 (190)
52 PF01102 Glycophorin_A: Glycop 31.1 19 0.00041 26.0 0.4 22 23-44 77-99 (122)
53 PRK14759 potassium-transportin 30.8 22 0.00047 19.0 0.5 19 20-38 9-27 (29)
54 PF04790 Sarcoglycan_1: Sarcog 30.8 33 0.00072 28.1 1.8 11 61-71 90-100 (264)
55 PHA02973 hypothetical protein; 30.5 1.6E+02 0.0035 20.5 4.8 53 28-86 13-66 (102)
56 PF01456 Mucin: Mucin-like gly 29.7 31 0.00067 25.0 1.3 10 9-18 3-12 (143)
57 PF14283 DUF4366: Domain of un 28.8 52 0.0011 26.2 2.5 10 33-42 181-190 (218)
58 cd01324 cbb3_Oxidase_CcoQ Cyto 28.6 32 0.00069 20.5 1.0 20 20-39 16-35 (48)
59 PF07423 DUF1510: Protein of u 28.4 42 0.00091 26.7 1.9 6 17-22 19-24 (217)
60 PHA02650 hypothetical protein; 28.3 45 0.00097 22.2 1.7 6 28-33 65-70 (81)
61 PF10296 DUF2404: Putative int 28.2 1.7E+02 0.0037 19.4 4.7 44 39-88 34-80 (91)
62 COG1862 YajC Preprotein transl 28.1 26 0.00056 24.3 0.6 13 27-39 19-31 (97)
63 PHA03093 EEV glycoprotein; Pro 27.9 18 0.00039 27.9 -0.2 31 62-93 93-123 (185)
64 PF06129 Chordopox_G3: Chordop 26.3 78 0.0017 22.4 2.8 62 27-88 13-86 (109)
65 PF12751 Vac7: Vacuolar segreg 25.9 49 0.0011 28.6 2.0 27 21-47 313-341 (387)
66 PRK07718 fliL flagellar basal 25.8 60 0.0013 23.8 2.3 15 75-89 63-77 (142)
67 KOG3927 Na+/K+ ATPase, beta su 25.8 34 0.00073 28.6 1.0 35 11-46 46-83 (300)
68 PF14828 Amnionless: Amnionles 24.7 46 0.001 29.3 1.7 26 17-42 344-369 (437)
69 COG4736 CcoQ Cbb3-type cytochr 24.7 27 0.00058 22.0 0.2 13 27-39 22-34 (60)
70 TIGR01732 tiny_TM_bacill conse 24.5 99 0.0021 16.0 2.2 6 27-32 20-25 (26)
71 PF13396 PLDc_N: Phospholipase 24.1 1E+02 0.0022 17.6 2.6 17 22-38 30-46 (46)
72 COG2869 NqrC Na+-transporting 23.5 75 0.0016 25.8 2.5 37 1-38 1-38 (264)
73 PF09677 TrbI_Ftype: Type-F co 23.4 62 0.0013 22.9 1.8 16 28-43 19-34 (111)
74 PF05781 MRVI1: MRVI1 protein; 23.0 53 0.0012 29.7 1.7 28 10-37 477-504 (538)
75 PF08758 Cadherin_pro: Cadheri 22.8 2.5E+02 0.0054 18.9 4.8 39 33-71 39-81 (90)
76 COG3121 FimC P pilus assembly 22.3 1.6E+02 0.0035 23.5 4.3 37 61-101 165-203 (235)
77 cd07912 Tweety_N N-terminal do 22.0 92 0.002 27.3 3.0 6 4-9 75-80 (418)
78 KOG3950 Gamma/delta sarcoglyca 21.9 1.5E+02 0.0032 24.3 3.8 16 60-75 111-126 (292)
79 PF10969 DUF2771: Protein of u 21.6 62 0.0013 24.4 1.7 11 36-46 31-41 (161)
80 PRK11486 flagellar biosynthesi 21.6 48 0.001 24.0 1.0 22 15-36 20-41 (124)
81 TIGR00739 yajC preprotein tran 21.6 57 0.0012 21.8 1.3 9 30-38 16-24 (84)
82 PF09307 MHC2-interact: CLIP, 21.4 31 0.00068 24.6 0.0 11 27-37 48-58 (114)
83 PF11770 GAPT: GRB2-binding ad 21.3 1.2E+02 0.0027 22.7 3.1 19 20-38 19-37 (158)
84 PF05399 EVI2A: Ectropic viral 20.9 90 0.002 24.8 2.4 13 12-24 131-143 (227)
85 PF14654 Epiglycanin_C: Mucin, 20.6 1.2E+02 0.0026 21.1 2.7 25 9-33 17-41 (106)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=223.95 Aligned_cols=168 Identities=18% Similarity=0.239 Sum_probs=126.7
Q ss_pred cccceehhhHHHHHHHHHHHHHHhheeeeEeecCCCEEEEeeEEEeeeecCC-----ceEE----EEEEEEcCCCeeEEE
Q 039458 5 RRSFSCRLLCAIFFTPIFVVGIIFLILWLSLRPHHPKFHVKQFTLQGLGQTT-----GYLN----VNVTVRNPSHRVRIC 75 (179)
Q Consensus 5 ~r~~~c~~lc~~l~~~~~l~g~~~li~~l~lrP~~P~~~v~~~~l~~~~~~~-----~~ln----~~l~v~NPN~~~~i~ 75 (179)
||++||+|+++++.++++++++++.++|++|||++|+|+|+++++++|++++ ..+| ++++++|||. ++|+
T Consensus 32 ~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~ 110 (219)
T PLN03160 32 RRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFK 110 (219)
T ss_pred ccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEE
Confidence 3444444544444445555666777789999999999999999999999852 2334 6778999998 8999
Q ss_pred EeeeEEEEEECCEEEeccccCCceeeCCCCeEEEEeEeeeeeEEccccCChHHHHHhhcce----------eEEEeeEEE
Q 039458 76 YDSMRGSVYYKDQRVGVVSVFESHYQEPKNTTILHYVYNEPLTLTTQASNNQRTIEIMNDL----------IKYKGSMWD 145 (179)
Q Consensus 76 Y~~~~~~v~Y~g~~lg~~~~lp~f~q~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~l~~d~----------vr~kvg~~~ 145 (179)
|+++++.++|+|+.+|++. +|+|+|++++++.+++++ .+.+.++.-.++...|+..+. .+++++.+.
T Consensus 111 Y~~~~~~v~Y~g~~vG~a~-~p~g~~~ar~T~~l~~tv--~~~~~~~~~~~~L~~D~~~G~v~l~~~~~v~gkVkv~~i~ 187 (219)
T PLN03160 111 YSNTTTTIYYGGTVVGEAR-TPPGKAKARRTMRMNVTV--DIIPDKILSVPGLLTDISSGLLNMNSYTRIGGKVKILKII 187 (219)
T ss_pred EcCeEEEEEECCEEEEEEE-cCCcccCCCCeEEEEEEE--EEEeceeccchhHHHHhhCCeEEEEEEEEEEEEEEEEEEE
Confidence 9999999999999999999 999999999999998832 233444332344444444332 455777778
Q ss_pred EeCeeEEEEeeEEEcCCCceeccccCCCceEecC
Q 039458 146 KRSHRMRATCNVGVGPNGVILAKYKDRQCHVHMS 179 (179)
Q Consensus 146 ~~~~~~~v~C~~~v~~~g~~~~~~~~~~C~v~~~ 179 (179)
++++.++++|++.++..++ .+++++|+.+++
T Consensus 188 k~~v~~~v~C~v~V~~~~~---~i~~~~C~~~~~ 218 (219)
T PLN03160 188 KKHVVVKMNCTMTVNITSQ---AIQGQKCKRHVD 218 (219)
T ss_pred EEEEEEEEEeEEEEECCCC---EEeccEeccccc
Confidence 8889999999999986553 467899998753
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.26 E-value=3.3e-11 Score=83.49 Aligned_cols=66 Identities=26% Similarity=0.392 Sum_probs=51.3
Q ss_pred EEEEEcCCCeeEEEEeeeEEEEEECCEEEeccccCCceeeCCCCeEEEEeEeeeeeEEccccCChHHHHHh
Q 039458 62 NVTVRNPSHRVRICYDSMRGSVYYKDQRVGVVSVFESHYQEPKNTTILHYVYNEPLTLTTQASNNQRTIEI 132 (179)
Q Consensus 62 ~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~lp~f~q~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~l 132 (179)
+|+++|||. ++++|+++++.++|+|+.+|.+...|+|+|++++++.+.. .+..+...+.......+
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~----~v~~~~~~l~~~l~~~~ 66 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPV----PVSVDYSDLPRLLKDLL 66 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEE----EEEEEHHHHHHHHHHHH
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEE----EEEEcHHHHHHHHHhhh
Confidence 689999999 9999999999999999999944438999999999999988 66666554433333333
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.55 E-value=1.2e-06 Score=61.17 Aligned_cols=72 Identities=19% Similarity=0.220 Sum_probs=56.8
Q ss_pred ceEEEEEEEEcCCCeeEEEEeeeEEEEEECCEEEeccccCC-ceeeCCCCeEEEEeEeeeeeEEccccCChHHHHHhhcc
Q 039458 57 GYLNVNVTVRNPSHRVRICYDSMRGSVYYKDQRVGVVSVFE-SHYQEPKNTTILHYVYNEPLTLTTQASNNQRTIEIMND 135 (179)
Q Consensus 57 ~~ln~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~lp-~f~q~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~l~~d 135 (179)
.++.+++.++|||. +++.|++++..++|+|..+|.+. .+ +...++++++.+.+ .+.. +.........+|...
T Consensus 15 ~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~-~~~~~~ipa~~~~~v~v----~~~~-~~~~~~~~~~~l~~~ 87 (100)
T smart00769 15 IEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGE-IPDSGTLPGNGRTVLDV----PVTV-NLFLAEALIWHIANG 87 (100)
T ss_pred EEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEE-cCCCcEECCCCcEEEEE----EEEe-ehhHhHHHHHhhccC
Confidence 46779999999998 89999999999999999999999 65 79999999999888 5555 332233334455443
No 4
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=97.87 E-value=0.0013 Score=48.95 Aligned_cols=99 Identities=15% Similarity=0.225 Sum_probs=73.1
Q ss_pred CCCEEEEeeEEEeeeecCCceEEEEEEEEcCCCeeEEEEeeeEEEEEECCEEEeccccCCceeeCCCCeEEEEeEeeeee
Q 039458 38 HHPKFHVKQFTLQGLGQTTGYLNVNVTVRNPSHRVRICYDSMRGSVYYKDQRVGVVSVFESHYQEPKNTTILHYVYNEPL 117 (179)
Q Consensus 38 ~~P~~~v~~~~l~~~~~~~~~ln~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~lp~f~q~~~~~~~v~~~~~~~l 117 (179)
+.|.+.--.+..-....+...+-.++.++|||. +.+--..++..++-+|..+|++..+.++..++++...+++ .+
T Consensus 31 ~~p~ve~~ka~wGkvt~s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvdv----~l 105 (161)
T COG5608 31 KKPGVESMKAKWGKVTNSETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVDV----PL 105 (161)
T ss_pred CCCCceEEEEEEEEEeccceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEEE----EE
Confidence 667766666666555444446779999999998 8999999999999999999999866789999999999988 66
Q ss_pred EEccccCChHHHHHhhcce---eEEEe
Q 039458 118 TLTTQASNNQRTIEIMNDL---IKYKG 141 (179)
Q Consensus 118 ~~~~~~~~~~~~~~l~~d~---vr~kv 141 (179)
.-+.-.+...-...+.... +|+++
T Consensus 106 ~~d~~~~ke~w~~hi~ngErs~Ir~~i 132 (161)
T COG5608 106 RLDNSKIKEWWVTHIENGERSTIRVRI 132 (161)
T ss_pred EEehHHHHHHHHHHhhccCcccEEEEE
Confidence 6554444444344554332 55554
No 5
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.45 E-value=0.0018 Score=51.79 Aligned_cols=96 Identities=14% Similarity=0.225 Sum_probs=59.4
Q ss_pred ehhhHHHHHHHHHHHHHHhheeeeEeecCCCEEEEeeEEEeeeec--CCce--EE--EEEEEEcCCCeeEEEEeeeEEEE
Q 039458 10 CRLLCAIFFTPIFVVGIIFLILWLSLRPHHPKFHVKQFTLQGLGQ--TTGY--LN--VNVTVRNPSHRVRICYDSMRGSV 83 (179)
Q Consensus 10 c~~lc~~l~~~~~l~g~~~li~~l~lrP~~P~~~v~~~~l~~~~~--~~~~--ln--~~l~v~NPN~~~~i~Y~~~~~~v 83 (179)
+..+++++++-+++.|+++++++ ||.-.++-.++......+ +.++ ++ -.|-++|||. ..+.-.++.+++
T Consensus 75 klyV~~sV~~CLl~~~L~iFFLf----PRsV~v~~~gv~s~~V~f~~~~~~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv 149 (238)
T PF07092_consen 75 KLYVFLSVLLCLLLSGLVIFFLF----PRSVTVSPVGVKSVTVSFNPDKSTVQLNITNTLNISNPNF-YPVTVTNLSIQV 149 (238)
T ss_pred EEEeeHHHHHHHHHHHheEEEEe----CcEEEEecCcEEEEEEEEeCCCCEEEEEEEEEEEccCCCE-EEEEEEeEEEEE
Confidence 33444444433444444444444 776555444443333333 3333 34 6678999997 899999999999
Q ss_pred EECCEEEeccccCC-ceeeCCCCeEEEEe
Q 039458 84 YYKDQRVGVVSVFE-SHYQEPKNTTILHY 111 (179)
Q Consensus 84 ~Y~g~~lg~~~~lp-~f~q~~~~~~~v~~ 111 (179)
.|....+|.+. .. ....++++.+.+..
T Consensus 150 ~~~~~VVG~~~-~~~~~~I~Prs~~q~~~ 177 (238)
T PF07092_consen 150 LYMKTVVGKGK-NSNITVIGPRSSKQVNY 177 (238)
T ss_pred EEEEeEEeeeE-ecceEEecccCCceEEE
Confidence 99999999887 43 23556666665655
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=97.08 E-value=0.002 Score=54.70 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=28.8
Q ss_pred eEEEEEEEEcCCCeeEEEEeeeEEEEEECCEEEec
Q 039458 58 YLNVNVTVRNPSHRVRICYDSMRGSVYYKDQRVGV 92 (179)
Q Consensus 58 ~ln~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~ 92 (179)
-|++++.+.|||- +.|..++.++.++-+-.-+|.
T Consensus 349 mfdl~V~A~NPn~-~~V~I~d~dldIFAKS~yvg~ 382 (387)
T PF12751_consen 349 MFDLTVEAFNPNW-FTVTIDDMDLDIFAKSRYVGT 382 (387)
T ss_pred EEeeEEEEECCCe-EEEEeccceeeeEecCCccCc
Confidence 3689999999998 899999999999977655554
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=95.84 E-value=0.038 Score=43.94 Aligned_cols=98 Identities=12% Similarity=0.107 Sum_probs=56.8
Q ss_pred CCccccceehhhHHHHHHHHHHHHHHhheeeeEeecC--CCEEEEeeEEEe-------eeecC--------CceEEEEEE
Q 039458 2 ATQRRSFSCRLLCAIFFTPIFVVGIIFLILWLSLRPH--HPKFHVKQFTLQ-------GLGQT--------TGYLNVNVT 64 (179)
Q Consensus 2 ~~k~r~~~c~~lc~~l~~~~~l~g~~~li~~l~lrP~--~P~~~v~~~~l~-------~~~~~--------~~~ln~~l~ 64 (179)
.++++.+||.|+|++++++++++++++++++=-=.|+ .-.++++++.+. .+|++ |+.. +.+.
T Consensus 32 ~r~~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~ 110 (219)
T PLN03160 32 RRRNCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFK 110 (219)
T ss_pred ccccceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEE
Confidence 3788999999999988887777777777765555564 334555554432 12221 3322 4555
Q ss_pred EEcCCCeeEEEEeeeEEEEEECCEEEeccccCCceeeCCCCeE
Q 039458 65 VRNPSHRVRICYDSMRGSVYYKDQRVGVVSVFESHYQEPKNTT 107 (179)
Q Consensus 65 v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~lp~f~q~~~~~~ 107 (179)
.. |....++|++..+.- ..+..+. .|++.+...+.+
T Consensus 111 Y~--~~~~~v~Y~g~~vG~----a~~p~g~-~~ar~T~~l~~t 146 (219)
T PLN03160 111 YS--NTTTTIYYGGTVVGE----ARTPPGK-AKARRTMRMNVT 146 (219)
T ss_pred Ec--CeEEEEEECCEEEEE----EEcCCcc-cCCCCeEEEEEE
Confidence 54 334788997754432 2233444 455544444444
No 8
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.92 E-value=0.37 Score=37.00 Aligned_cols=47 Identities=17% Similarity=0.260 Sum_probs=29.8
Q ss_pred CCCccccc-eehhhHHHHHHHHHHHHHHhheeeeEeecCCCEEEEeeEEE
Q 039458 1 MATQRRSF-SCRLLCAIFFTPIFVVGIIFLILWLSLRPHHPKFHVKQFTL 49 (179)
Q Consensus 1 ~~~k~r~~-~c~~lc~~l~~~~~l~g~~~li~~l~lrP~~P~~~v~~~~l 49 (179)
|++|+... -++.+|.+++++..+++ ++++-+++.|++|..++.+++=
T Consensus 1 ~~~kk~~~n~WKw~f~iLLAln~l~~--~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 1 MFRKKGTLNYWKWLFFILLALNTLLA--VLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred CCCccccccHHHHHHHHHHHHHHHHH--HHhheeeccCCCCCchhhccCc
Confidence 44444333 47777776665554433 5566678899997777776654
No 9
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=87.36 E-value=8.3 Score=27.28 Aligned_cols=66 Identities=12% Similarity=0.192 Sum_probs=34.1
Q ss_pred HhheeeeEee-cCCCEEEEeeEEEeeeec-CCceEEEEEEEEcCCCeeEEEEeeeEEEEEECCEEEeccc-cCCc
Q 039458 27 IFLILWLSLR-PHHPKFHVKQFTLQGLGQ-TTGYLNVNVTVRNPSHRVRICYDSMRGSVYYKDQRVGVVS-VFES 98 (179)
Q Consensus 27 ~~li~~l~lr-P~~P~~~v~~~~l~~~~~-~~~~ln~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~-~lp~ 98 (179)
++++.|+.++ ...|.++ .....|.+ ++.++.+++++.-|-. ...+- .--...|.+.++|... .+||
T Consensus 18 ~~~~~w~~~~~~~~~~v~---~~~~gf~vv~d~~v~v~f~Vtr~~~-~~a~C--~VrA~~~d~aeVGrreV~vp~ 86 (112)
T PF14155_consen 18 GAVVAWFGYSQFGSPPVS---AEVIGFEVVDDSTVEVTFDVTRDPG-RPAVC--IVRALDYDGAEVGRREVLVPP 86 (112)
T ss_pred HHHHhHhhhhhccCCCce---EEEEEEEECCCCEEEEEEEEEECCC-CCEEE--EEEEEeCCCCEEEEEEEEECC
Confidence 3444555444 4445553 33444554 3467777777665522 22222 1122357888888765 2565
No 10
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=87.06 E-value=6.6 Score=29.36 Aligned_cols=38 Identities=21% Similarity=0.374 Sum_probs=26.2
Q ss_pred ceEEEEEEEEcCCCeeEEEEeeeEEEEEECCEE-Eeccc
Q 039458 57 GYLNVNVTVRNPSHRVRICYDSMRGSVYYKDQR-VGVVS 94 (179)
Q Consensus 57 ~~ln~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~-lg~~~ 94 (179)
..+++.+.+.--|.++.+.|..+-=.++=+|+. ++.++
T Consensus 70 ~~~~v~F~vtD~~~~v~V~Y~GiLPDLFREGQgVVa~G~ 108 (153)
T COG2332 70 GSLKVSFVVTDGNKSVTVSYEGILPDLFREGQGVVAEGQ 108 (153)
T ss_pred CCcEEEEEEecCCceEEEEEeccCchhhhcCCeEEEEEE
Confidence 456677777777777888888776677666664 44454
No 11
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=85.60 E-value=2.3 Score=30.66 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=33.2
Q ss_pred HHHHHHHHHhheeeeEe--ecCCCEEEEeeEEEeeeecCCceEEEEEEEEcCCCee
Q 039458 19 TPIFVVGIIFLILWLSL--RPHHPKFHVKQFTLQGLGQTTGYLNVNVTVRNPSHRV 72 (179)
Q Consensus 19 ~~~~l~g~~~li~~l~l--rP~~P~~~v~~~~l~~~~~~~~~ln~~l~v~NPN~~~ 72 (179)
..+++++++.+++|.++ +++.|.+.+......+-. .+.+-+-++++|--...
T Consensus 11 s~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~~--~gqyyVpF~V~N~gg~T 64 (122)
T TIGR02588 11 STLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERMQ--TGQYYVPFAIHNLGGTT 64 (122)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEEe--CCEEEEEEEEEeCCCcE
Confidence 34455566666665544 667899988776654322 34567778888876643
No 12
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=81.48 E-value=0.57 Score=29.33 Aligned_cols=8 Identities=50% Similarity=0.978 Sum_probs=4.2
Q ss_pred ccccceeh
Q 039458 4 QRRSFSCR 11 (179)
Q Consensus 4 k~r~~~c~ 11 (179)
+||+|+|.
T Consensus 26 r~RrRrc~ 33 (60)
T PF06072_consen 26 RRRRRRCR 33 (60)
T ss_pred HHHHHHHH
Confidence 44555554
No 13
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=75.95 E-value=15 Score=28.51 Aligned_cols=20 Identities=5% Similarity=0.144 Sum_probs=16.7
Q ss_pred ecCCCEEEEeeEEEeeeecC
Q 039458 36 RPHHPKFHVKQFTLQGLGQT 55 (179)
Q Consensus 36 rP~~P~~~v~~~~l~~~~~~ 55 (179)
.++.|.|..++++...++.+
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred CCCCCCEEEeccEEEEECCC
Confidence 46679999999999888875
No 14
>PRK05529 cell division protein FtsQ; Provisional
Probab=67.98 E-value=11 Score=30.62 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=14.4
Q ss_pred EEEEEEcCCCeeEEEEee
Q 039458 61 VNVTVRNPSHRVRICYDS 78 (179)
Q Consensus 61 ~~l~v~NPN~~~~i~Y~~ 78 (179)
++++-+.||. +.|+-.+
T Consensus 112 a~V~r~~P~t-l~I~V~E 128 (255)
T PRK05529 112 YSVESKPPGT-IVVRVVE 128 (255)
T ss_pred EEEEEeCCCE-EEEEEEE
Confidence 8999999997 8888754
No 15
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=59.00 E-value=57 Score=23.83 Aligned_cols=63 Identities=17% Similarity=0.117 Sum_probs=40.4
Q ss_pred HhheeeeEeec--CCCEEEEeeEEEeeeecCCceEEEEEEEEcCCCeeEEEEeeeEEEEEECCEEEecc
Q 039458 27 IFLILWLSLRP--HHPKFHVKQFTLQGLGQTTGYLNVNVTVRNPSHRVRICYDSMRGSVYYKDQRVGVV 93 (179)
Q Consensus 27 ~~li~~l~lrP--~~P~~~v~~~~l~~~~~~~~~ln~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~ 93 (179)
+.+++|.++.. +.|..++.+..- +.. +..+-+..+++|-.+ ..+..=.+++.+..++...++.
T Consensus 33 ~~~~~~~~l~~~~~~~~~~~~~~~~--l~~-~~~~~v~g~V~N~g~-~~i~~c~i~~~l~~~~~~~~n~ 97 (149)
T PF09624_consen 33 IPFFGYYWLDKYLKKIELTLTSQKR--LQY-SESFYVDGTVTNTGK-FTIKKCKITVKLYNDKQVSGNK 97 (149)
T ss_pred HHHHHHHHHhhhcCCceEEEeeeee--eee-ccEEEEEEEEEECCC-CEeeEEEEEEEEEeCCCccCch
Confidence 34444555544 456666655543 332 356778899999987 6788878888888866544443
No 16
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=55.72 E-value=11 Score=25.79 Aligned_cols=32 Identities=19% Similarity=0.292 Sum_probs=12.4
Q ss_pred CEEEEeeEEEeeeecCCceEE------EEEEEEcCCCe
Q 039458 40 PKFHVKQFTLQGLGQTTGYLN------VNVTVRNPSHR 71 (179)
Q Consensus 40 P~~~v~~~~l~~~~~~~~~ln------~~l~v~NPN~~ 71 (179)
..-....+++++..++++.+. +++.++|.+..
T Consensus 18 ~~~~~v~I~~~~~~f~P~~i~v~~G~~v~l~~~N~~~~ 55 (104)
T PF13473_consen 18 AAAQTVTITVTDFGFSPSTITVKAGQPVTLTFTNNDSR 55 (104)
T ss_dssp ------------EEEES-EEEEETTCEEEEEEEE-SSS
T ss_pred cccccccccccCCeEecCEEEEcCCCeEEEEEEECCCC
Confidence 334445556666666665553 78888888764
No 17
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=54.46 E-value=93 Score=23.56 Aligned_cols=30 Identities=20% Similarity=0.449 Sum_probs=15.4
Q ss_pred EEEEEEEEcCCCeeEEEEeeeEEEEEECCE
Q 039458 59 LNVNVTVRNPSHRVRICYDSMRGSVYYKDQ 88 (179)
Q Consensus 59 ln~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~ 88 (179)
+.+.+.+...+..+.+.|..+-=.++=.|+
T Consensus 78 ~~v~F~vtD~~~~v~V~Y~GilPDlFrEG~ 107 (159)
T PRK13150 78 LKVNFSLYDAEGSVTVSYEGILPDLFREGQ 107 (159)
T ss_pred cEEEEEEEcCCcEEEEEEeccCCccccCCC
Confidence 345555555555555555555444444443
No 18
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=53.33 E-value=6.7 Score=27.97 Aligned_cols=11 Identities=9% Similarity=0.308 Sum_probs=7.2
Q ss_pred heeeeEeecCC
Q 039458 29 LILWLSLRPHH 39 (179)
Q Consensus 29 li~~l~lrP~~ 39 (179)
+++|+.+||+.
T Consensus 14 ~i~yf~iRPQk 24 (113)
T PRK06531 14 GLIFFMQRQQK 24 (113)
T ss_pred HHHHheechHH
Confidence 34566799964
No 19
>TIGR03726 strep_RK_lipo putative cross-wall-targeting lipoprotein signal. The YSIRK signal domain targets proteins to the cross-wall, or septum, of dividing Gram-positive bacterial. Lipoprotein signal motifs direct a characteristic N-terminal cleavage and lipid modification for membrane anchoring. This Streptococcal-only signal peptide variant appears to be a hybrid between the two, likely directing protein targeting of nascent surface lipoproteins to the cross-wall. Nearly all members of this family have the characteristic LPXTG cell wall anchor signal at the C-terminus.
Probab=50.57 E-value=13 Score=20.62 Aligned_cols=20 Identities=25% Similarity=0.378 Sum_probs=14.0
Q ss_pred cccceehhhHHHHHHHHHHH
Q 039458 5 RRSFSCRLLCAIFFTPIFVV 24 (179)
Q Consensus 5 ~r~~~c~~lc~~l~~~~~l~ 24 (179)
|+|.-++.+|.+++.-.+++
T Consensus 4 RKsK~~~tLCGa~Lgt~~~~ 23 (34)
T TIGR03726 4 RKSKKYRTLCGAALGTAVTA 23 (34)
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 56677889999877654443
No 20
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=46.74 E-value=18 Score=29.44 Aligned_cols=62 Identities=15% Similarity=0.373 Sum_probs=40.2
Q ss_pred HHHHHHHhheeeeEeecCCCEEEEeeEEEeeee-cCC-------------ce--E----------------EEEEEEEcC
Q 039458 21 IFVVGIIFLILWLSLRPHHPKFHVKQFTLQGLG-QTT-------------GY--L----------------NVNVTVRNP 68 (179)
Q Consensus 21 ~~l~g~~~li~~l~lrP~~P~~~v~~~~l~~~~-~~~-------------~~--l----------------n~~l~v~NP 68 (179)
+.++++.++++|...-++.|.|.+..+.++.=. ++. +. + +++++=.=|
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~Gn~~~s~~~I~~~~~l~~~~~~~~ld~~~~~~~i~~~PwVk~a~V~r~~P 118 (269)
T COG1589 39 LVLLLLVLVVLWVLILLSLPYFPIRKVSVSGNNQVSEEDILKALGLDGGTSFLTLDLNAIRENIEKLPWVKSAEVRRQFP 118 (269)
T ss_pred HHHHHHHHHHHheehhhhcCCccceEEEEecCcccCHHHHHHHhhhccCCceEEEcHHHHHHHHHhCCCeEEEEEEEeCC
Confidence 344455666778888888999999999887432 221 11 1 277777789
Q ss_pred CCeeEEEEeeeEEEE
Q 039458 69 SHRVRICYDSMRGSV 83 (179)
Q Consensus 69 N~~~~i~Y~~~~~~v 83 (179)
|. +.|+-.+=+.-.
T Consensus 119 nt-v~I~v~Er~piA 132 (269)
T COG1589 119 NT-LEIEVVEREPIA 132 (269)
T ss_pred Cc-EEEEEEEeeeEE
Confidence 97 888876543333
No 21
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=46.24 E-value=13 Score=28.08 Aligned_cols=17 Identities=47% Similarity=1.171 Sum_probs=11.2
Q ss_pred HHHHHHHhheeeeEeec
Q 039458 21 IFVVGIIFLILWLSLRP 37 (179)
Q Consensus 21 ~~l~g~~~li~~l~lrP 37 (179)
++++++++.++|+.+||
T Consensus 12 l~l~~~~~y~~W~~~rp 28 (157)
T PF06092_consen 12 LFLLACILYFLWLTLRP 28 (157)
T ss_pred HHHHHHHHHhhhhccCC
Confidence 33434444788989999
No 22
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=45.99 E-value=24 Score=21.85 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=11.1
Q ss_pred HHHHHHhheeeeEeecC
Q 039458 22 FVVGIIFLILWLSLRPH 38 (179)
Q Consensus 22 ~l~g~~~li~~l~lrP~ 38 (179)
.++.++++++|+.-||+
T Consensus 40 ~~~~~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 40 AVFLFIVVFVYLKTRPR 56 (56)
T ss_pred HHHHHHhheeEEeccCC
Confidence 33344667778888885
No 23
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=45.78 E-value=6.2 Score=22.77 Aligned_cols=27 Identities=7% Similarity=0.138 Sum_probs=12.2
Q ss_pred hhhHHHHHHHHHHHHHHhheeeeEeec
Q 039458 11 RLLCAIFFTPIFVVGIIFLILWLSLRP 37 (179)
Q Consensus 11 ~~lc~~l~~~~~l~g~~~li~~l~lrP 37 (179)
..-|+..+-+.+++.++.+++|+++|-
T Consensus 12 aIa~~VvVPV~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 12 AIAVGVVVPVGVIIIVLGAFLFFWYRR 38 (40)
T ss_pred EEEEEEEechHHHHHHHHHHhheEEec
Confidence 344443333333434444555555654
No 24
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=45.11 E-value=11 Score=20.74 Aligned_cols=14 Identities=14% Similarity=0.790 Sum_probs=7.8
Q ss_pred HHHHHHHHhheeee
Q 039458 20 PIFVVGIIFLILWL 33 (179)
Q Consensus 20 ~~~l~g~~~li~~l 33 (179)
.+.+++++++++|+
T Consensus 11 vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 11 VVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHH
Confidence 34445556666664
No 25
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.83 E-value=15 Score=27.45 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHHHHHHhheeeeEeecC
Q 039458 11 RLLCAIFFTPIFVVGIIFLILWLSLRPH 38 (179)
Q Consensus 11 ~~lc~~l~~~~~l~g~~~li~~l~lrP~ 38 (179)
..+.+++++++.+++.+++++|....|.
T Consensus 7 ~~i~ii~viflai~~s~~~~~~~s~~P~ 34 (161)
T COG5353 7 IIIIIILVIFLAIILSIALFFWKSMKPY 34 (161)
T ss_pred eeehhHHHHHHHHHHHHHHHHhHhcCcc
Confidence 3344444556666677788888888884
No 26
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=44.68 E-value=30 Score=22.11 Aligned_cols=14 Identities=14% Similarity=0.385 Sum_probs=10.4
Q ss_pred HHHhheeeeEeecC
Q 039458 25 GIIFLILWLSLRPH 38 (179)
Q Consensus 25 g~~~li~~l~lrP~ 38 (179)
+.+..+.|++.+|+
T Consensus 15 a~a~~atwviVq~~ 28 (66)
T PF10907_consen 15 AAAGAATWVIVQPR 28 (66)
T ss_pred hhhceeEEEEECCC
Confidence 33566679999998
No 27
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=44.56 E-value=34 Score=26.42 Aligned_cols=29 Identities=10% Similarity=0.430 Sum_probs=17.7
Q ss_pred ehhhHHHHHHHHHHHHHHhheeeeEeecCCC
Q 039458 10 CRLLCAIFFTPIFVVGIIFLILWLSLRPHHP 40 (179)
Q Consensus 10 c~~lc~~l~~~~~l~g~~~li~~l~lrP~~P 40 (179)
++..|++++ .+++++++++++.+++|.+|
T Consensus 3 WK~aF~~Ll--a~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 3 WKWAFLILL--ALNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHHHH--HHHHHHHhheeeEEEccCCC
Confidence 344455443 34445566677778899876
No 28
>PHA02844 putative transmembrane protein; Provisional
Probab=43.72 E-value=26 Score=22.96 Aligned_cols=7 Identities=29% Similarity=0.705 Sum_probs=3.1
Q ss_pred Hhheeee
Q 039458 27 IFLILWL 33 (179)
Q Consensus 27 ~~li~~l 33 (179)
+..++||
T Consensus 63 ~~~flYL 69 (75)
T PHA02844 63 FLTFLYL 69 (75)
T ss_pred HHHHHHH
Confidence 3334455
No 29
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=43.53 E-value=1.4e+02 Score=22.56 Aligned_cols=12 Identities=0% Similarity=-0.100 Sum_probs=7.3
Q ss_pred cCChHHHHHhhc
Q 039458 123 ASNNQRTIEIMN 134 (179)
Q Consensus 123 ~~~~~~~~~l~~ 134 (179)
..+++++++|+.
T Consensus 134 YmPpEv~~al~~ 145 (160)
T PRK13165 134 YTPPEVEEAMKK 145 (160)
T ss_pred CCCHHHHHHHHh
Confidence 455667666654
No 30
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=42.43 E-value=37 Score=20.15 Aligned_cols=22 Identities=5% Similarity=0.141 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhheeeeEeec
Q 039458 16 IFFTPIFVVGIIFLILWLSLRP 37 (179)
Q Consensus 16 ~l~~~~~l~g~~~li~~l~lrP 37 (179)
++++..++++++...+|..|-|
T Consensus 11 ~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 11 AITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred HHHHHHHHHHHhhheeeeccCC
Confidence 3455667778889999999977
No 31
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=42.36 E-value=22 Score=26.74 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=15.4
Q ss_pred HHHHHHHHhheeeeEeecCCCEE
Q 039458 20 PIFVVGIIFLILWLSLRPHHPKF 42 (179)
Q Consensus 20 ~~~l~g~~~li~~l~lrP~~P~~ 42 (179)
..++++++++++|+..|++.=.|
T Consensus 60 g~ill~il~lvf~~c~r~kktdf 82 (154)
T PF04478_consen 60 GPILLGILALVFIFCIRRKKTDF 82 (154)
T ss_pred HHHHHHHHHhheeEEEecccCcc
Confidence 34555677777888888876443
No 32
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=40.99 E-value=9 Score=26.85 Aligned_cols=20 Identities=35% Similarity=0.682 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHhhe
Q 039458 11 RLLCAIFFTPIFVVGIIFLI 30 (179)
Q Consensus 11 ~~lc~~l~~~~~l~g~~~li 30 (179)
+++..++..+++++.+++++
T Consensus 29 k~~~~i~~s~~~ll~lval~ 48 (106)
T PF11837_consen 29 KCLAAIFSSLLFLLSLVALI 48 (106)
T ss_dssp --------------------
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34434444444444444444
No 33
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=40.28 E-value=1.5e+02 Score=22.00 Aligned_cols=9 Identities=22% Similarity=0.242 Sum_probs=4.5
Q ss_pred eEEEEEECC
Q 039458 79 MRGSVYYKD 87 (179)
Q Consensus 79 ~~~~v~Y~g 87 (179)
.++.|.|.|
T Consensus 82 ~~i~V~Y~G 90 (148)
T PRK13254 82 ATVPVVYTG 90 (148)
T ss_pred eEEEEEECC
Confidence 344555555
No 34
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=39.77 E-value=12 Score=19.30 Aligned_cols=20 Identities=25% Similarity=0.556 Sum_probs=10.7
Q ss_pred HHHHHHHHhheeeeEeecCC
Q 039458 20 PIFVVGIIFLILWLSLRPHH 39 (179)
Q Consensus 20 ~~~l~g~~~li~~l~lrP~~ 39 (179)
.++.+++.+..+|-.++|..
T Consensus 5 ~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 5 GIVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHHhCccc
Confidence 33444445555555677853
No 35
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=38.64 E-value=35 Score=19.97 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhheeeeEeec
Q 039458 16 IFFTPIFVVGIIFLILWLSLRP 37 (179)
Q Consensus 16 ~l~~~~~l~g~~~li~~l~lrP 37 (179)
++++..++++++...+|..+.|
T Consensus 8 ~i~i~~~lv~~Tgy~iYtaFGp 29 (43)
T PF02468_consen 8 AIFISCLLVSITGYAIYTAFGP 29 (43)
T ss_pred HHHHHHHHHHHHhhhhhheeCC
Confidence 3445667778888889999976
No 36
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=38.51 E-value=60 Score=23.44 Aligned_cols=7 Identities=29% Similarity=0.297 Sum_probs=3.4
Q ss_pred EEEEECC
Q 039458 81 GSVYYKD 87 (179)
Q Consensus 81 ~~v~Y~g 87 (179)
+.|.|.|
T Consensus 84 i~V~Y~G 90 (131)
T PF03100_consen 84 IPVVYTG 90 (131)
T ss_dssp EEEEEES
T ss_pred EEEEECC
Confidence 4445554
No 37
>PF14927 Neurensin: Neurensin
Probab=38.28 E-value=35 Score=25.28 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHhhee
Q 039458 14 CAIFFTPIFVVGIIFLIL 31 (179)
Q Consensus 14 c~~l~~~~~l~g~~~li~ 31 (179)
+.++-++++++|+++++.
T Consensus 47 ~~i~g~l~Ll~Gi~~l~v 64 (140)
T PF14927_consen 47 GFISGLLLLLLGIVALTV 64 (140)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 333445667778776655
No 38
>CHL00020 psbN photosystem II protein N
Probab=37.67 E-value=44 Score=19.54 Aligned_cols=22 Identities=14% Similarity=0.202 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHhheeeeEeec
Q 039458 16 IFFTPIFVVGIIFLILWLSLRP 37 (179)
Q Consensus 16 ~l~~~~~l~g~~~li~~l~lrP 37 (179)
++++..++++++...+|..+-|
T Consensus 8 ~i~i~~ll~~~Tgy~iYtaFGp 29 (43)
T CHL00020 8 AIFISGLLVSFTGYALYTAFGQ 29 (43)
T ss_pred HHHHHHHHHHhhheeeeeccCC
Confidence 3445667778888889999977
No 39
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=37.36 E-value=1.6e+02 Score=21.28 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=31.5
Q ss_pred ceEEEEEEEEcCCCeeEEEEeeeEEEEE-ECCEEEeccc
Q 039458 57 GYLNVNVTVRNPSHRVRICYDSMRGSVY-YKDQRVGVVS 94 (179)
Q Consensus 57 ~~ln~~l~v~NPN~~~~i~Y~~~~~~v~-Y~g~~lg~~~ 94 (179)
+.+.++.+++|..+ ....|-.++++++ -+|+.+.+-.
T Consensus 68 ~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~r~ 105 (149)
T PF11906_consen 68 GVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLARRV 105 (149)
T ss_pred CEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEEEE
Confidence 56779999999998 6899999999998 7888887766
No 40
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=37.00 E-value=1.2e+02 Score=22.71 Aligned_cols=18 Identities=6% Similarity=-0.195 Sum_probs=13.1
Q ss_pred EEEEeeeEEEEEECCEEE
Q 039458 73 RICYDSMRGSVYYKDQRV 90 (179)
Q Consensus 73 ~i~Y~~~~~~v~Y~g~~l 90 (179)
+-+|=...+++.+.+...
T Consensus 77 ~~rylkv~i~L~~~~~~~ 94 (162)
T PRK07021 77 ADRVLYVGLTLRLPDEAT 94 (162)
T ss_pred CceEEEEEEEEEECCHHH
Confidence 467888888888876644
No 41
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=36.73 E-value=1.1e+02 Score=21.67 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=16.6
Q ss_pred EEEEEEEEcCCCeeEEEEeeeEEE
Q 039458 59 LNVNVTVRNPSHRVRICYDSMRGS 82 (179)
Q Consensus 59 ln~~l~v~NPN~~~~i~Y~~~~~~ 82 (179)
+++++.+.||.. +++..+.+.+.
T Consensus 102 ~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 102 LNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred EEEEEEEcCCCe-EEEEeccEEEe
Confidence 448888889887 77777666554
No 42
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=36.40 E-value=39 Score=24.05 Aligned_cols=26 Identities=8% Similarity=0.432 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHHHHHhheeeeEeec
Q 039458 12 LLCAIFFTPIFVVGIIFLILWLSLRP 37 (179)
Q Consensus 12 ~lc~~l~~~~~l~g~~~li~~l~lrP 37 (179)
.+.++++.+++-++++.+++||+++-
T Consensus 63 ffvglii~LivSLaLVsFvIFLiiQT 88 (128)
T PF15145_consen 63 FFVGLIIVLIVSLALVSFVIFLIIQT 88 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHHHheeec
Confidence 33344555666666777777888764
No 43
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=36.13 E-value=1.9e+02 Score=21.81 Aligned_cols=12 Identities=0% Similarity=-0.141 Sum_probs=7.0
Q ss_pred cCChHHHHHhhc
Q 039458 123 ASNNQRTIEIMN 134 (179)
Q Consensus 123 ~~~~~~~~~l~~ 134 (179)
..++++.++|+.
T Consensus 127 YmP~Ev~~al~~ 138 (155)
T PRK13159 127 YMPKELKDAMAE 138 (155)
T ss_pred CCCHHHHHHHHh
Confidence 455666666653
No 44
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=34.40 E-value=67 Score=22.16 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhheeee-Eee
Q 039458 15 AIFFTPIFVVGIIFLILWL-SLR 36 (179)
Q Consensus 15 ~~l~~~~~l~g~~~li~~l-~lr 36 (179)
..+++++.++.++.+|.|+ ++|
T Consensus 66 i~lls~v~IlVily~IyYFVILR 88 (101)
T PF06024_consen 66 ISLLSFVCILVILYAIYYFVILR 88 (101)
T ss_pred HHHHHHHHHHHHHhhheEEEEEe
Confidence 3344444444444445555 444
No 45
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=33.78 E-value=8.8 Score=19.99 Aligned_cols=19 Identities=26% Similarity=0.752 Sum_probs=10.2
Q ss_pred HHHHHHHhheeeeEeecCC
Q 039458 21 IFVVGIIFLILWLSLRPHH 39 (179)
Q Consensus 21 ~~l~g~~~li~~l~lrP~~ 39 (179)
++.+++.+..+|-.+||..
T Consensus 5 ~l~~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 5 VLAVGLFIYLFYALLRPER 23 (26)
T ss_pred HHHHHHHHHHHHHHhCHHh
Confidence 3444445555555677853
No 46
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=33.03 E-value=1.6e+02 Score=22.15 Aligned_cols=18 Identities=6% Similarity=0.257 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhheeeeEe
Q 039458 18 FTPIFVVGIIFLILWLSL 35 (179)
Q Consensus 18 ~~~~~l~g~~~li~~l~l 35 (179)
++++++++..+.++|+..
T Consensus 25 ~ivl~~~a~~~~~~~~~~ 42 (159)
T COG1580 25 LIVLLALAGAGYFFWFGS 42 (159)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 344455555666667665
No 47
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=33.00 E-value=17 Score=25.77 Aligned_cols=13 Identities=8% Similarity=0.191 Sum_probs=7.5
Q ss_pred HhheeeeEeecCC
Q 039458 27 IFLILWLSLRPHH 39 (179)
Q Consensus 27 ~~li~~l~lrP~~ 39 (179)
++++.|+.+||+.
T Consensus 14 ~~i~yF~~iRPQk 26 (109)
T PRK05886 14 MGGFMYFASRRQR 26 (109)
T ss_pred HHHHHHHHccHHH
Confidence 3334455788863
No 48
>PF11807 DUF3328: Domain of unknown function (DUF3328); InterPro: IPR021765 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes.
Probab=32.35 E-value=26 Score=26.52 Aligned_cols=11 Identities=36% Similarity=0.392 Sum_probs=5.1
Q ss_pred Cccccceehhh
Q 039458 3 TQRRSFSCRLL 13 (179)
Q Consensus 3 ~k~r~~~c~~l 13 (179)
+++|+++....
T Consensus 3 p~~r~~~w~~~ 13 (217)
T PF11807_consen 3 PRRRRRRWRRL 13 (217)
T ss_pred CCCCCccHHHH
Confidence 34455545443
No 49
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=31.43 E-value=19 Score=20.41 Aligned_cols=15 Identities=47% Similarity=1.061 Sum_probs=7.2
Q ss_pred HHHHHHhheeeeEee
Q 039458 22 FVVGIIFLILWLSLR 36 (179)
Q Consensus 22 ~l~g~~~li~~l~lr 36 (179)
+++.+..+|+|.++.
T Consensus 19 flv~imliif~f~le 33 (43)
T PF11395_consen 19 FLVIIMLIIFWFSLE 33 (43)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333334555666553
No 50
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=31.27 E-value=19 Score=21.35 Aligned_cols=15 Identities=20% Similarity=0.308 Sum_probs=7.6
Q ss_pred HHHhheeeeEeecCC
Q 039458 25 GIIFLILWLSLRPHH 39 (179)
Q Consensus 25 g~~~li~~l~lrP~~ 39 (179)
++.++++|.+++|+.
T Consensus 20 ~~F~gi~~w~~~~~~ 34 (49)
T PF05545_consen 20 VFFIGIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHHHHHcccc
Confidence 333444444667763
No 51
>PF05966 Chordopox_A33R: Chordopoxvirus A33R protein; InterPro: IPR009238 This family consists of several Chordopoxvirus A33R proteins. A33R plays a role in promoting Ab-resistant cell-to-cell spread of virus [] and interacts with A36R to incorporate the protein into the outer membrane of intracellular enveloped virions (IEV) [].; PDB: 3K7B_A.
Probab=31.25 E-value=16 Score=28.42 Aligned_cols=83 Identities=14% Similarity=0.147 Sum_probs=11.2
Q ss_pred ccceehhhHHHHHHHHHHHHHHhheeeeEeecCCCEEEEeeEEEe-eeecCC---ceEEEEEEEEcCCCeeEEEEeeeEE
Q 039458 6 RSFSCRLLCAIFFTPIFVVGIIFLILWLSLRPHHPKFHVKQFTLQ-GLGQTT---GYLNVNVTVRNPSHRVRICYDSMRG 81 (179)
Q Consensus 6 r~~~c~~lc~~l~~~~~l~g~~~li~~l~lrP~~P~~~v~~~~l~-~~~~~~---~~ln~~l~v~NPN~~~~i~Y~~~~~ 81 (179)
+.++|-.+|.=+++++-++.++++...|+++=..=+-..+++.-. .++-.+ +.-+..-...|-.= =||.|++--.
T Consensus 37 kk~r~i~l~lRI~ii~SilSL~~i~~~Lalq~n~C~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~tC-~GI~~~n~Cl 115 (190)
T PF05966_consen 37 KKRRCISLFLRISIIISILSLMAITVTLALQLNKCKSISESAHTDYSVNTYSSITPDADYASSVTNSTC-DGIVYDNKCL 115 (190)
T ss_dssp ------------------------------------------------------------------S---SSEEETTEEE
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhccccccccccccccccccCcC-CCcccCCEEE
Confidence 344454455534445555555666666776654433333322221 111111 11123334445443 2677877666
Q ss_pred EEEECCEE
Q 039458 82 SVYYKDQR 89 (179)
Q Consensus 82 ~v~Y~g~~ 89 (179)
.+.+....
T Consensus 116 ~~~~~p~T 123 (190)
T PF05966_consen 116 TLNYEPKT 123 (190)
T ss_dssp EEEEEEEE
T ss_pred EecCCCCC
Confidence 65554433
No 52
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=31.14 E-value=19 Score=25.99 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=8.0
Q ss_pred HHHHHhheeeeEeec-CCCEEEE
Q 039458 23 VVGIIFLILWLSLRP-HHPKFHV 44 (179)
Q Consensus 23 l~g~~~li~~l~lrP-~~P~~~v 44 (179)
++|++++|+|++-|- |.+...+
T Consensus 77 vIg~Illi~y~irR~~Kk~~~~~ 99 (122)
T PF01102_consen 77 VIGIILLISYCIRRLRKKSSSDV 99 (122)
T ss_dssp HHHHHHHHHHHHHHHS-------
T ss_pred HHHHHHHHHHHHHHHhccCCCCC
Confidence 445555666665532 3343333
No 53
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=30.79 E-value=22 Score=19.01 Aligned_cols=19 Identities=21% Similarity=0.539 Sum_probs=10.4
Q ss_pred HHHHHHHHhheeeeEeecC
Q 039458 20 PIFVVGIIFLILWLSLRPH 38 (179)
Q Consensus 20 ~~~l~g~~~li~~l~lrP~ 38 (179)
.++.+|+.+..++-.+||.
T Consensus 9 ~~va~~L~vYL~~ALlrPE 27 (29)
T PRK14759 9 GAVSLGLLIYLTYALLRPE 27 (29)
T ss_pred HHHHHHHHHHHHHHHhCcc
Confidence 3344444555555567885
No 54
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=30.78 E-value=33 Score=28.08 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=9.1
Q ss_pred EEEEEEcCCCe
Q 039458 61 VNVTVRNPSHR 71 (179)
Q Consensus 61 ~~l~v~NPN~~ 71 (179)
+++.++|+|..
T Consensus 90 v~~~~r~~~g~ 100 (264)
T PF04790_consen 90 VTLNARNENGS 100 (264)
T ss_pred eEEEEecCCCc
Confidence 88888888875
No 55
>PHA02973 hypothetical protein; Provisional
Probab=30.46 E-value=1.6e+02 Score=20.53 Aligned_cols=53 Identities=8% Similarity=0.125 Sum_probs=28.9
Q ss_pred hheeeeEeecC-CCEEEEeeEEEeeeecCCceEEEEEEEEcCCCeeEEEEeeeEEEEEEC
Q 039458 28 FLILWLSLRPH-HPKFHVKQFTLQGLGQTTGYLNVNVTVRNPSHRVRICYDSMRGSVYYK 86 (179)
Q Consensus 28 ~li~~l~lrP~-~P~~~v~~~~l~~~~~~~~~ln~~l~v~NPN~~~~i~Y~~~~~~v~Y~ 86 (179)
++..|+-+.|. .-+..|....-.+.. ++++.--++-+.||++.. ...+.++|+
T Consensus 13 ~l~Y~fn~~pTNKmq~aV~~l~~e~~~-d~p~~l~t~lF~~~~~~~-----~~~v~~yyd 66 (102)
T PHA02973 13 LLCYFFNFKRTNKMDIGINPIKKIPWS-DNDHIFVSSLFHNKDKYL-----TGPMKLNYD 66 (102)
T ss_pred HHHHHhhccccchhhhhhhhccccccc-CCCceeEEEEecCCCCcc-----ccceEEEEc
Confidence 33445566673 345555555444422 334555777888888732 344555553
No 56
>PF01456 Mucin: Mucin-like glycoprotein; InterPro: IPR000458 This family of trypanosomal proteins resemble vertebrate mucins. The protein consists of three regions. The N and C terminii are conserved between all members of the family, whereas the central region is not well conserved and contains a large number of threonine residues which can be glycosylated []. Indirect evidence suggested that these genes might encode the core protein of parasite mucins, glycoproteins that were proposed to be involved in the interaction with, and invasion of, mammalian host cells.
Probab=29.69 E-value=31 Score=25.01 Aligned_cols=10 Identities=60% Similarity=1.481 Sum_probs=6.8
Q ss_pred eehhhHHHHH
Q 039458 9 SCRLLCAIFF 18 (179)
Q Consensus 9 ~c~~lc~~l~ 18 (179)
-||.||++|+
T Consensus 3 tcRLLCalLv 12 (143)
T PF01456_consen 3 TCRLLCALLV 12 (143)
T ss_pred hHHHHHHHHH
Confidence 3788887554
No 57
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=28.81 E-value=52 Score=26.17 Aligned_cols=10 Identities=10% Similarity=0.155 Sum_probs=6.4
Q ss_pred eEeecCCCEE
Q 039458 33 LSLRPHHPKF 42 (179)
Q Consensus 33 l~lrP~~P~~ 42 (179)
-++||+...-
T Consensus 181 K~~K~K~~~~ 190 (218)
T PF14283_consen 181 KFYKPKQEEK 190 (218)
T ss_pred EEeccccccc
Confidence 3778876543
No 58
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=28.59 E-value=32 Score=20.51 Aligned_cols=20 Identities=10% Similarity=0.316 Sum_probs=9.6
Q ss_pred HHHHHHHHhheeeeEeecCC
Q 039458 20 PIFVVGIIFLILWLSLRPHH 39 (179)
Q Consensus 20 ~~~l~g~~~li~~l~lrP~~ 39 (179)
++.++++.+.+++.+++|+.
T Consensus 16 l~~~~~~Figiv~wa~~p~~ 35 (48)
T cd01324 16 LLYLALFFLGVVVWAFRPGR 35 (48)
T ss_pred HHHHHHHHHHHHHHHhCCCc
Confidence 33333334444444677853
No 59
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=28.41 E-value=42 Score=26.71 Aligned_cols=6 Identities=0% Similarity=-0.258 Sum_probs=2.2
Q ss_pred HHHHHH
Q 039458 17 FFTPIF 22 (179)
Q Consensus 17 l~~~~~ 22 (179)
++++++
T Consensus 19 aI~IV~ 24 (217)
T PF07423_consen 19 AIGIVS 24 (217)
T ss_pred HHHHHH
Confidence 333333
No 60
>PHA02650 hypothetical protein; Provisional
Probab=28.30 E-value=45 Score=22.18 Aligned_cols=6 Identities=17% Similarity=0.406 Sum_probs=2.5
Q ss_pred hheeee
Q 039458 28 FLILWL 33 (179)
Q Consensus 28 ~li~~l 33 (179)
..++||
T Consensus 65 ~~flYL 70 (81)
T PHA02650 65 FSFFVF 70 (81)
T ss_pred HHHHHH
Confidence 333454
No 61
>PF10296 DUF2404: Putative integral membrane protein conserved region (DUF2404); InterPro: IPR019411 This is entry represents a domain of unknown function found in mitochondrial distribution and morphology proteins Mdm12 and Mdm34, and in maintenance of mitochondrial morphology protein Mmm1. These proteins are components of the ERMES/MDM complex, which serves as a molecular tether to connect the endoplasmic reticulum and mitochondria [].
Probab=28.23 E-value=1.7e+02 Score=19.43 Aligned_cols=44 Identities=16% Similarity=0.285 Sum_probs=28.2
Q ss_pred CCEEEEeeEEEeeeecCC--ceEE-EEEEEEcCCCeeEEEEeeeEEEEEECCE
Q 039458 39 HPKFHVKQFTLQGLGQTT--GYLN-VNVTVRNPSHRVRICYDSMRGSVYYKDQ 88 (179)
Q Consensus 39 ~P~~~v~~~~l~~~~~~~--~~ln-~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~ 88 (179)
.|.|- +++++..+++++ +.+. +.+.--+++.... .++.+.|.|.
T Consensus 34 ~P~fl-~~i~v~~~~lG~~~P~i~~~~~~~~~~~g~~~-----~~~dv~Y~G~ 80 (91)
T PF10296_consen 34 LPSFL-DEISVTELDLGDSPPIISNVRIPDLDPDGELW-----IEFDVSYSGG 80 (91)
T ss_pred CCCcc-CcEEEEEEECCCCCCEEEeccccccCCCCCEE-----EEEEEEEcCC
Confidence 56665 899999999964 5664 5554345554332 2377888763
No 62
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=28.11 E-value=26 Score=24.28 Aligned_cols=13 Identities=23% Similarity=0.646 Sum_probs=7.6
Q ss_pred HhheeeeEeecCC
Q 039458 27 IFLILWLSLRPHH 39 (179)
Q Consensus 27 ~~li~~l~lrP~~ 39 (179)
++++.|+++||+.
T Consensus 19 ~~ifyFli~RPQr 31 (97)
T COG1862 19 FAIFYFLIIRPQR 31 (97)
T ss_pred HHHHHHhhcCHHH
Confidence 3334455889964
No 63
>PHA03093 EEV glycoprotein; Provisional
Probab=27.87 E-value=18 Score=27.94 Aligned_cols=31 Identities=13% Similarity=-0.024 Sum_probs=17.8
Q ss_pred EEEEEcCCCeeEEEEeeeEEEEEECCEEEecc
Q 039458 62 NVTVRNPSHRVRICYDSMRGSVYYKDQRVGVV 93 (179)
Q Consensus 62 ~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~ 93 (179)
.-..+|.+= =||.|+.--..+.+....+-+|
T Consensus 93 ~~~~~~~~C-~GI~~~~~C~~~~~epkTf~dA 123 (185)
T PHA03093 93 TQYKHKESC-KGIVYDGSCYIFHSEPKTFSDA 123 (185)
T ss_pred ccccccCcC-CCeecCCEeEEecCCCcCHHHH
Confidence 334455554 3788887766666655444443
No 64
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=26.35 E-value=78 Score=22.41 Aligned_cols=62 Identities=23% Similarity=0.329 Sum_probs=30.3
Q ss_pred HhheeeeEeecCC-CEEEEeeEEEeeeecC-----CceEEEEEEEEcCCC----eeEEEEee--eEEEEEECCE
Q 039458 27 IFLILWLSLRPHH-PKFHVKQFTLQGLGQT-----TGYLNVNVTVRNPSH----RVRICYDS--MRGSVYYKDQ 88 (179)
Q Consensus 27 ~~li~~l~lrP~~-P~~~v~~~~l~~~~~~-----~~~ln~~l~v~NPN~----~~~i~Y~~--~~~~v~Y~g~ 88 (179)
+++..++-+.|-. =...|....-.+.-.. .+..--++-+.||+. .+.++||+ ..+.+.|+|.
T Consensus 13 l~~~Y~~~y~PTNK~ql~v~~~~~~~~i~k~~d~~~~~~~~t~lF~~~~~~~~~~v~l~Yds~~~~Vtv~~~~~ 86 (109)
T PF06129_consen 13 LVLCYFFNYYPTNKMQLAVRELNYENAIIKQQDDNLPKLLNTVLFLNPDKPVSSQVILYYDSRSGTVTVAYKNK 86 (109)
T ss_pred HHHHHHHhhccchHHHHhhcccchhhHHHhcccccCccceeeEEecCCCcccccceEEEEccCCCeEEEEECCc
Confidence 3444566677842 2333333322211110 123335667888883 35666665 3456666654
No 65
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=25.94 E-value=49 Score=28.65 Aligned_cols=27 Identities=11% Similarity=0.439 Sum_probs=12.1
Q ss_pred HHHHHHHhheeeeEeec-CCCEE-EEeeE
Q 039458 21 IFVVGIIFLILWLSLRP-HHPKF-HVKQF 47 (179)
Q Consensus 21 ~~l~g~~~li~~l~lrP-~~P~~-~v~~~ 47 (179)
+|++|.++.+++..-+| .+-.+ .|+++
T Consensus 313 lL~ig~~~gFv~AttKpL~~v~v~~I~NV 341 (387)
T PF12751_consen 313 LLVIGFAIGFVFATTKPLTDVQVVSIQNV 341 (387)
T ss_pred HHHHHHHHHhhhhcCcccccceEEEeeee
Confidence 33444444444445566 33333 44444
No 66
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=25.82 E-value=60 Score=23.78 Aligned_cols=15 Identities=0% Similarity=0.045 Sum_probs=10.0
Q ss_pred EEeeeEEEEEECCEE
Q 039458 75 CYDSMRGSVYYKDQR 89 (179)
Q Consensus 75 ~Y~~~~~~v~Y~g~~ 89 (179)
+|=..++++.+.+..
T Consensus 63 ~ylk~~i~l~~~~~~ 77 (142)
T PRK07718 63 NFIRIQFKIETDSKK 77 (142)
T ss_pred CEEEEEEEEEECCHH
Confidence 465677777777654
No 67
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=25.77 E-value=34 Score=28.64 Aligned_cols=35 Identities=14% Similarity=0.393 Sum_probs=20.2
Q ss_pred hhhHHHHHHHHHHHHHHhheeee---EeecCCCEEEEee
Q 039458 11 RLLCAIFFTPIFVVGIIFLILWL---SLRPHHPKFHVKQ 46 (179)
Q Consensus 11 ~~lc~~l~~~~~l~g~~~li~~l---~lrP~~P~~~v~~ 46 (179)
.++...+++-+++++++++++|. .+-|+.|.+. ++
T Consensus 46 ~IllfYivFY~~la~lf~~~~~~~~~tidp~~P~~~-~~ 83 (300)
T KOG3927|consen 46 KILLFYIVFYGVLAALFAGCMWFMLQTIDPKVPKYK-DS 83 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc-cc
Confidence 44333333344555555555555 4579999999 44
No 68
>PF14828 Amnionless: Amnionless
Probab=24.68 E-value=46 Score=29.30 Aligned_cols=26 Identities=19% Similarity=0.495 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhheeeeEeecCCCEE
Q 039458 17 FFTPIFVVGIIFLILWLSLRPHHPKF 42 (179)
Q Consensus 17 l~~~~~l~g~~~li~~l~lrP~~P~~ 42 (179)
+++.+++++++..++|+.+-|+.|.+
T Consensus 344 vl~~Lllv~ll~~~~ll~~~~~~~~l 369 (437)
T PF14828_consen 344 VLGCLLLVALLFGVILLYRLPRNPSL 369 (437)
T ss_pred hHHHHHHHHHHHHhheEEeccccccc
Confidence 33334444555555555555776655
No 69
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.68 E-value=27 Score=22.01 Aligned_cols=13 Identities=15% Similarity=0.651 Sum_probs=8.2
Q ss_pred HhheeeeEeecCC
Q 039458 27 IFLILWLSLRPHH 39 (179)
Q Consensus 27 ~~li~~l~lrP~~ 39 (179)
.+.++|.++||+.
T Consensus 22 fiavi~~ayr~~~ 34 (60)
T COG4736 22 FIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHhcccc
Confidence 4445566788853
No 70
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=24.55 E-value=99 Score=16.02 Aligned_cols=6 Identities=17% Similarity=0.074 Sum_probs=2.3
Q ss_pred Hhheee
Q 039458 27 IFLILW 32 (179)
Q Consensus 27 ~~li~~ 32 (179)
++...|
T Consensus 20 Iiga~~ 25 (26)
T TIGR01732 20 IVGAAF 25 (26)
T ss_pred Hhheee
Confidence 443333
No 71
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=24.06 E-value=1e+02 Score=17.60 Aligned_cols=17 Identities=29% Similarity=0.317 Sum_probs=10.6
Q ss_pred HHHHHHhheeeeEeecC
Q 039458 22 FVVGIIFLILWLSLRPH 38 (179)
Q Consensus 22 ~l~g~~~li~~l~lrP~ 38 (179)
+++-++..++|+.++++
T Consensus 30 ~~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 30 LFFPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHHHhheEEEeCC
Confidence 33455666778877653
No 72
>COG2869 NqrC Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrC [Energy production and conversion]
Probab=23.51 E-value=75 Score=25.76 Aligned_cols=37 Identities=19% Similarity=0.183 Sum_probs=19.9
Q ss_pred CCCccc-cceehhhHHHHHHHHHHHHHHhheeeeEeecC
Q 039458 1 MATQRR-SFSCRLLCAIFFTPIFVVGIIFLILWLSLRPH 38 (179)
Q Consensus 1 ~~~k~r-~~~c~~lc~~l~~~~~l~g~~~li~~l~lrP~ 38 (179)
||+|.+ ......+.. ++++-++.++++.-.+..|+|.
T Consensus 1 mask~~~ds~~~tllv-vl~lsLvcsvivagaav~Lkp~ 38 (264)
T COG2869 1 MASKFNKDSTWGTLLV-VLVLSLVCSVIVAGAAVGLKPI 38 (264)
T ss_pred CCccccccCcceeehh-HHHHHHHHHHHHhhhheeeChH
Confidence 675553 344444322 2334455556666667788884
No 73
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=23.42 E-value=62 Score=22.88 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=9.1
Q ss_pred hheeeeEeecCCCEEE
Q 039458 28 FLILWLSLRPHHPKFH 43 (179)
Q Consensus 28 ~li~~l~lrP~~P~~~ 43 (179)
+.+.|++.++..|.+.
T Consensus 19 ~~vt~~l~~~~~p~iV 34 (111)
T PF09677_consen 19 AWVTWLLASQPQPRIV 34 (111)
T ss_pred HHHHHHHHhcCCCceE
Confidence 4455556666666543
No 74
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=23.02 E-value=53 Score=29.67 Aligned_cols=28 Identities=7% Similarity=0.128 Sum_probs=15.1
Q ss_pred ehhhHHHHHHHHHHHHHHhheeeeEeec
Q 039458 10 CRLLCAIFFTPIFVVGIIFLILWLSLRP 37 (179)
Q Consensus 10 c~~lc~~l~~~~~l~g~~~li~~l~lrP 37 (179)
|+.|+..+.+++++++++.++.-+.|++
T Consensus 477 nK~LWIsvAliVLLAaLlSfLtg~~fq~ 504 (538)
T PF05781_consen 477 NKVLWISVALIVLLAALLSFLTGLFFQR 504 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3556665555555555555554555654
No 75
>PF08758 Cadherin_pro: Cadherin prodomain like; InterPro: IPR014868 Cadherins are a group of proteins that mediate calcium dependent cell-cell adhesion. They are activated through cleavage of a prosequence in the late Golgi. This protein corresponds to the folded region of the prosequence, and is termed the prodomain. The prodomain shows structural resemblance to the cadherin domain, but lacks all the features known to be important for cadherin-cadherin interactions []. ; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1OP4_A.
Probab=22.80 E-value=2.5e+02 Score=18.91 Aligned_cols=39 Identities=10% Similarity=0.182 Sum_probs=20.6
Q ss_pred eEeecCCCEEEEee-EEEe---eeecCCceEEEEEEEEcCCCe
Q 039458 33 LSLRPHHPKFHVKQ-FTLQ---GLGQTTGYLNVNVTVRNPSHR 71 (179)
Q Consensus 33 l~lrP~~P~~~v~~-~~l~---~~~~~~~~ln~~l~v~NPN~~ 71 (179)
+.|++.+|.|.|.. -+|. .+.+.+....+++.+.+++.+
T Consensus 39 ~~~~ssDpdF~V~~DGsVy~~r~v~l~~~~~~F~V~a~D~~~~ 81 (90)
T PF08758_consen 39 VIFESSDPDFRVLEDGSVYAKRPVQLSSEQRSFTVHAWDSQTQ 81 (90)
T ss_dssp EEEE---SEEEEETTTEEEEES--S-SSS-EEEEEEEEETTTT
T ss_pred eEEecCCCCEEEcCCCeEEEeeeEecCCCceEEEEEEECCCCC
Confidence 56778888888765 2332 333344445688888888764
No 76
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.35 E-value=1.6e+02 Score=23.45 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=23.7
Q ss_pred EEEEEEcCCCeeEEEEeeeEEEEEECCEEEe--ccccCCceee
Q 039458 61 VNVTVRNPSHRVRICYDSMRGSVYYKDQRVG--VVSVFESHYQ 101 (179)
Q Consensus 61 ~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg--~~~~lp~f~q 101 (179)
-.|+++||.. ..+.+.+.++.. +|..++ ... ++||.+
T Consensus 165 ~~l~v~Nptp-y~vtl~~~~l~~--~~~~~~~~~~m-v~P~s~ 203 (235)
T COG3121 165 NLLTVKNPTP-YYVTLANLTLNV--GGRKLGLNSGM-VAPFST 203 (235)
T ss_pred CEEEEECCCC-cEEEEEEEEEee--CceecCCCcce-ECCCcc
Confidence 5778999987 567777666655 666654 333 455433
No 77
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=22.04 E-value=92 Score=27.33 Aligned_cols=6 Identities=33% Similarity=0.468 Sum_probs=2.4
Q ss_pred ccccce
Q 039458 4 QRRSFS 9 (179)
Q Consensus 4 k~r~~~ 9 (179)
|+++++
T Consensus 75 k~~s~~ 80 (418)
T cd07912 75 PRHSIC 80 (418)
T ss_pred CCCCcc
Confidence 334443
No 78
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=21.92 E-value=1.5e+02 Score=24.29 Aligned_cols=16 Identities=44% Similarity=0.549 Sum_probs=12.8
Q ss_pred EEEEEEEcCCCeeEEE
Q 039458 60 NVNVTVRNPSHRVRIC 75 (179)
Q Consensus 60 n~~l~v~NPN~~~~i~ 75 (179)
|+++.++|||.++.=+
T Consensus 111 nvtvnarn~~g~v~~~ 126 (292)
T KOG3950|consen 111 NVTVNARNPNGKVTGQ 126 (292)
T ss_pred CeeEEccCCCCceeee
Confidence 4999999999876443
No 79
>PF10969 DUF2771: Protein of unknown function (DUF2771); InterPro: IPR024495 This bacterial family of proteins has no known function.
Probab=21.62 E-value=62 Score=24.40 Aligned_cols=11 Identities=18% Similarity=0.504 Sum_probs=6.9
Q ss_pred ecCCCEEEEee
Q 039458 36 RPHHPKFHVKQ 46 (179)
Q Consensus 36 rP~~P~~~v~~ 46 (179)
.|+.|++++-+
T Consensus 31 ~p~~p~It~~s 41 (161)
T PF10969_consen 31 DPQDPEITAYS 41 (161)
T ss_pred CCCCcEEEEEE
Confidence 36677776653
No 80
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=21.62 E-value=48 Score=24.01 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHhheeeeEee
Q 039458 15 AIFFTPIFVVGIIFLILWLSLR 36 (179)
Q Consensus 15 ~~l~~~~~l~g~~~li~~l~lr 36 (179)
-++..+++++++++++.|++=|
T Consensus 20 qv~~~L~lVl~lI~~~aWLlkR 41 (124)
T PRK11486 20 QVSGALIGIIALILAAAWLVKR 41 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777778888887533
No 81
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=21.60 E-value=57 Score=21.79 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=5.5
Q ss_pred eeeeEeecC
Q 039458 30 ILWLSLRPH 38 (179)
Q Consensus 30 i~~l~lrP~ 38 (179)
..++.+||.
T Consensus 16 ~yf~~~rpq 24 (84)
T TIGR00739 16 FYFLIIRPQ 24 (84)
T ss_pred HHHheechH
Confidence 344567885
No 82
>PF09307 MHC2-interact: CLIP, MHC2 interacting; InterPro: IPR015386 This domain is found in MHC class II-associated invariant chain (Ii), and in class II invariant chain-associated peptide (CLIP), and is required for association with class II major histocompatibility complex (MHC II) in the MHC II processing pathway []. Ii plays a critical role in the assembly of the MHC, as well as in MHC II antigen processing by stabilising peptide-free class II alpha/beta heterodimers in a complex soon after their synthesis and directing transport of the complex from the endoplasmic reticulum to compartments where peptide loading of class II takes place []. In antigen-presenting cells (APCs), loading of MHC II molecules with peptides is regulated by Ii, which blocks MHC II antigen-binding sites in pre-endosomal compartments []. Several factors modulate the surface expression of MHC II molecules via post-Golgi mechanisms, including CLIP. The Invariant chain contains a single transmembrane domain. Ii first assembles into a trimer and then associates with three class II alpha/beta MHC heterodimers. Although the membrane-proximal region of the Ii luminal domain is structurally disordered, the C-terminal segment of the luminal domain is largely alpha-helical and contains a major interaction site for the Ii trimer []. More information about these proteins can be found at Protein of the Month: MHC [].; GO: 0042289 MHC class II protein binding, 0006886 intracellular protein transport, 0006955 immune response, 0019882 antigen processing and presentation, 0016020 membrane; PDB: 1A6A_C 3QXD_F 3QXA_F 3PDO_C 1MUJ_C 3PGD_F 3PGC_F.
Probab=21.40 E-value=31 Score=24.61 Aligned_cols=11 Identities=0% Similarity=0.129 Sum_probs=0.0
Q ss_pred HhheeeeEeec
Q 039458 27 IFLILWLSLRP 37 (179)
Q Consensus 27 ~~li~~l~lrP 37 (179)
-++.+|++|+=
T Consensus 48 Qa~TaYfv~~Q 58 (114)
T PF09307_consen 48 QAVTAYFVFQQ 58 (114)
T ss_dssp -----------
T ss_pred HHHHHHHHHHh
Confidence 45566777765
No 83
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=21.26 E-value=1.2e+02 Score=22.70 Aligned_cols=19 Identities=5% Similarity=0.009 Sum_probs=10.7
Q ss_pred HHHHHHHHhheeeeEeecC
Q 039458 20 PIFVVGIIFLILWLSLRPH 38 (179)
Q Consensus 20 ~~~l~g~~~li~~l~lrP~ 38 (179)
+++|+...+.++|-+=|..
T Consensus 19 l~lLl~cgiGcvwhwkhr~ 37 (158)
T PF11770_consen 19 LLLLLLCGIGCVWHWKHRD 37 (158)
T ss_pred HHHHHHHhcceEEEeeccC
Confidence 3344444667777765543
No 84
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=20.91 E-value=90 Score=24.81 Aligned_cols=13 Identities=31% Similarity=0.938 Sum_probs=5.4
Q ss_pred hhHHHHHHHHHHH
Q 039458 12 LLCAIFFTPIFVV 24 (179)
Q Consensus 12 ~lc~~l~~~~~l~ 24 (179)
.+|.+++++++|+
T Consensus 131 LIClIIIAVLfLI 143 (227)
T PF05399_consen 131 LICLIIIAVLFLI 143 (227)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 85
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=20.64 E-value=1.2e+02 Score=21.06 Aligned_cols=25 Identities=8% Similarity=0.247 Sum_probs=15.9
Q ss_pred eehhhHHHHHHHHHHHHHHhheeee
Q 039458 9 SCRLLCAIFFTPIFVVGIIFLILWL 33 (179)
Q Consensus 9 ~c~~lc~~l~~~~~l~g~~~li~~l 33 (179)
-+-++.+.|..+++.+|+.+.+++.
T Consensus 17 PWeIfLItLasVvvavGl~aGLfFc 41 (106)
T PF14654_consen 17 PWEIFLITLASVVVAVGLFAGLFFC 41 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666677777776665543
Done!