Query 039458
Match_columns 179
No_of_seqs 131 out of 768
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:50:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.4 1.9E-06 6.5E-11 65.0 8.7 77 38-120 43-120 (174)
2 1xo8_A AT1G01470; structural g 98.1 1.2E-06 4.1E-11 64.7 3.3 72 38-111 20-92 (151)
3 3but_A Uncharacterized protein 98.0 0.0004 1.4E-08 50.2 13.7 73 58-135 19-91 (136)
4 2knc_B Integrin beta-3; transm 45.8 11 0.00037 24.1 1.9 17 17-33 17-33 (79)
5 2knc_A Integrin alpha-IIB; tra 43.8 19 0.00064 21.3 2.6 18 16-33 18-35 (54)
6 3me0_B PAPG protein; immunoglo 38.2 74 0.0025 22.1 5.3 81 35-121 9-109 (128)
7 3s8f_C Cytochrome C oxidase po 37.6 11 0.00037 20.2 0.8 14 20-33 11-24 (34)
8 3p5s_A CD38 molecule; cyclic A 35.6 7.8 0.00027 30.8 0.0 7 33-39 31-37 (278)
9 1nrp_R Receptor based peptide 35.4 7.3 0.00025 18.8 -0.1 11 63-73 6-16 (26)
10 2k9j_B Integrin beta-3; transm 34.6 23 0.0008 19.7 1.9 16 17-32 16-31 (43)
11 2lk9_A Bone marrow stromal ant 34.0 18 0.00061 19.2 1.2 7 9-15 2-8 (35)
12 1nro_R Receptor based peptide 28.5 13 0.00044 18.1 0.1 11 63-73 6-16 (27)
13 3qde_A Cellobiose phosphorylas 26.6 1.1E+02 0.0037 27.8 5.9 61 32-102 741-801 (811)
14 2v3s_A Serine/threonine-protei 25.4 91 0.0031 20.5 3.8 15 58-72 2-16 (96)
15 2l8s_A Integrin alpha-1; trans 23.6 48 0.0016 19.5 2.0 17 17-33 16-32 (54)
16 2rdd_B UPF0092 membrane protei 23.2 9.3 0.00032 20.6 -1.1 8 31-38 17-24 (37)
17 2kse_A Sensor protein QSEC; me 22.7 50 0.0017 22.7 2.5 30 6-35 8-37 (186)
18 1nei_A Hypothetical protein YO 22.4 77 0.0026 18.9 2.7 17 61-77 6-22 (60)
19 2kj1_A BM2 protein; cytoplasmi 20.5 21 0.0007 22.4 -0.1 13 59-71 10-22 (89)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.36 E-value=1.9e-06 Score=65.03 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=69.0
Q ss_pred CCCEEEEeeEEEeeeecCCceEEEEEEEEcCCCeeEEEEeeeEEEEEECCEEEeccccCC-ceeeCCCCeEEEEeEeeee
Q 039458 38 HHPKFHVKQFTLQGLGQTTGYLNVNVTVRNPSHRVRICYDSMRGSVYYKDQRVGVVSVFE-SHYQEPKNTTILHYVYNEP 116 (179)
Q Consensus 38 ~~P~~~v~~~~l~~~~~~~~~ln~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~lp-~f~q~~~~~~~v~~~~~~~ 116 (179)
+.|.+++.++++..++.....+.+.|+++|||. ..+.+.+++..+.-+|.+++++. .+ ++..++++++.+.+ .
T Consensus 43 ~~PeV~v~~v~~~~~~l~~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~-s~~~~tIpa~g~~~v~V----p 116 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTRDGVDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGT-IPDPGSLVGSGTTVLDV----P 116 (174)
T ss_dssp CCCEEEEEEEEEEEECSSSEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEE-ESCCCBCCSSEEEEEEE----E
T ss_pred CCCEEEEEEeEEeccccceEEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEe-cCCCceECCCCcEEEEE----E
Confidence 679999999999999888778999999999998 89999999999999999999998 55 68899999999988 5
Q ss_pred eEEc
Q 039458 117 LTLT 120 (179)
Q Consensus 117 l~~~ 120 (179)
++..
T Consensus 117 v~v~ 120 (174)
T 1yyc_A 117 VKVA 120 (174)
T ss_dssp EEES
T ss_pred EEEE
Confidence 5554
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.14 E-value=1.2e-06 Score=64.73 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=65.2
Q ss_pred CCCEEEEeeEEEeeeecCCceEEEEEEEEcCCCeeEEEEeeeEEEEEECCEEEeccccCC-ceeeCCCCeEEEEe
Q 039458 38 HHPKFHVKQFTLQGLGQTTGYLNVNVTVRNPSHRVRICYDSMRGSVYYKDQRVGVVSVFE-SHYQEPKNTTILHY 111 (179)
Q Consensus 38 ~~P~~~v~~~~l~~~~~~~~~ln~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~lp-~f~q~~~~~~~v~~ 111 (179)
+.|++++.++++..++.....+.+.|+++|||. ..+.+.+++..+.-+|.+++++. .+ ++..++++++.+.+
T Consensus 20 ~~P~v~v~~v~~~~~~~~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~-~~~~~~ipa~g~~~v~v 92 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNRDSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGK-IPDPGSLKAKDMTALDI 92 (151)
T ss_dssp CSCCCBCSEEEECCCTTTEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEE-EEECCCCSSSSEEEEEE
T ss_pred CCCEEEEEEeEEeccCcceeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEe-cCCCcEECCCCcEEEEE
Confidence 679999999999888877678999999999998 89999999999999999999998 54 68889999999987
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.95 E-value=0.0004 Score=50.20 Aligned_cols=73 Identities=18% Similarity=0.130 Sum_probs=60.3
Q ss_pred eEEEEEEEEcCCCeeEEEEeeeEEEEEECCEEEeccccCCceeeCCCCeEEEEeEeeeeeEEccccCChHHHHHhhcc
Q 039458 58 YLNVNVTVRNPSHRVRICYDSMRGSVYYKDQRVGVVSVFESHYQEPKNTTILHYVYNEPLTLTTQASNNQRTIEIMND 135 (179)
Q Consensus 58 ~ln~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~lp~f~q~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~l~~d 135 (179)
.+.+.|.+.|||. ..+.++.+...++.+|.++|++.+...+..++.+.+.+.+ .+..+.-.+.+.....++.+
T Consensus 19 ~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v----~~~i~~~~l~~~~~~hi~ng 91 (136)
T 3but_A 19 EIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKF----SLRLNNSFLREWWVTHIANG 91 (136)
T ss_dssp EEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEE----EEEEEHHHHTTHHHHHHHTT
T ss_pred EEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEE----EEEEchHHhHHHHHHHhhcC
Confidence 4679999999998 8999999999999999999999756789999999888888 67666655555555566554
No 4
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=45.82 E-value=11 Score=24.09 Aligned_cols=17 Identities=24% Similarity=0.780 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhheeee
Q 039458 17 FFTPIFVVGIIFLILWL 33 (179)
Q Consensus 17 l~~~~~l~g~~~li~~l 33 (179)
+++.++++|++++++|-
T Consensus 17 vi~gilliGllllliwk 33 (79)
T 2knc_B 17 VMGAILLIGLAALLIWK 33 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556777877777764
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=43.80 E-value=19 Score=21.32 Aligned_cols=18 Identities=17% Similarity=0.504 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhheeee
Q 039458 16 IFFTPIFVVGIIFLILWL 33 (179)
Q Consensus 16 ~l~~~~~l~g~~~li~~l 33 (179)
.+++-+++++++++++|-
T Consensus 18 svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 18 GVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444555666667763
No 6
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=38.22 E-value=74 Score=22.14 Aligned_cols=81 Identities=12% Similarity=0.114 Sum_probs=45.8
Q ss_pred eecCCCEEEEeeEEEeeeecCCc------------eEEEEEEEEcC-----C--CeeEEEEee-eEEEEEECCEEEeccc
Q 039458 35 LRPHHPKFHVKQFTLQGLGQTTG------------YLNVNVTVRNP-----S--HRVRICYDS-MRGSVYYKDQRVGVVS 94 (179)
Q Consensus 35 lrP~~P~~~v~~~~l~~~~~~~~------------~ln~~l~v~NP-----N--~~~~i~Y~~-~~~~v~Y~g~~lg~~~ 94 (179)
-||..|.+.++.-+++.=.+.+. ..|+.+.+..+ | .++.+--++ .+..++-+|+..++..
T Consensus 9 ~~~~~~~l~IdHG~ls~~~a~Gnt~~~~isV~Ct~p~~Vki~lt~~~~p~~~~~~~f~V~L~ngl~S~l~lNG~~~~e~~ 88 (128)
T 3me0_B 9 CRPSAQSLEIKHGDLSINSANNHYAAQTLSVSCDVPANIRFMLLRNTTPTYSHGKKFSVGLGHGWDSIVSVNGVDTGETT 88 (128)
T ss_dssp EEECCSCCEEECCCSSSSCCSSCEEEEEEEEEESSCEEEEEEEEECSCCSSCCTTSCEEEEETTEEEEEEETTBCSSEEE
T ss_pred cCCCCCceecccceechhhcCCCEEeeEEEEEeCCCceEEEEEecCCcccccccCceEEecCCCeEEEEEECCeecccee
Confidence 37999999988876654333321 12355554332 1 234555544 5666777998888776
Q ss_pred cCCceeeCCCCeEEEEeEeeeeeEEcc
Q 039458 95 VFESHYQEPKNTTILHYVYNEPLTLTT 121 (179)
Q Consensus 95 ~lp~f~q~~~~~~~v~~~~~~~l~~~~ 121 (179)
+ .|+.....+-.+.. +|.++.
T Consensus 89 -~-~~~~~~s~tvtV~S----~L~g~~ 109 (128)
T 3me0_B 89 -M-RWYKAGTQNLTIGS----RLYGES 109 (128)
T ss_dssp -E-EESSSEEEEEEEEE----EEEECS
T ss_pred -E-EEEecCCcEEEEEE----EEecCc
Confidence 6 33333333444555 675554
No 7
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=37.58 E-value=11 Score=20.17 Aligned_cols=14 Identities=36% Similarity=0.923 Sum_probs=8.4
Q ss_pred HHHHHHHHhheeee
Q 039458 20 PIFVVGIIFLILWL 33 (179)
Q Consensus 20 ~~~l~g~~~li~~l 33 (179)
.++++|+.++++|+
T Consensus 11 ~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 11 VILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555666666664
No 8
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=35.57 E-value=7.8 Score=30.82 Aligned_cols=7 Identities=0% Similarity=-0.296 Sum_probs=0.0
Q ss_pred eEeecCC
Q 039458 33 LSLRPHH 39 (179)
Q Consensus 33 l~lrP~~ 39 (179)
+.+.|+.
T Consensus 31 ~~~~~~~ 37 (278)
T 3p5s_A 31 IYKWHYS 37 (278)
T ss_dssp -------
T ss_pred EEeccCC
Confidence 3344443
No 9
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=35.43 E-value=7.3 Score=18.85 Aligned_cols=11 Identities=27% Similarity=0.606 Sum_probs=8.1
Q ss_pred EEEEcCCCeeE
Q 039458 63 VTVRNPSHRVR 73 (179)
Q Consensus 63 l~v~NPN~~~~ 73 (179)
+..+|||++..
T Consensus 6 fllrnpndkye 16 (26)
T 1nrp_R 6 FLLRNPNDKYE 16 (26)
T ss_pred hhhcCCCcccC
Confidence 45789999754
No 10
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=34.64 E-value=23 Score=19.75 Aligned_cols=16 Identities=25% Similarity=0.872 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHhheee
Q 039458 17 FFTPIFVVGIIFLILW 32 (179)
Q Consensus 17 l~~~~~l~g~~~li~~ 32 (179)
+++.++++|++++++|
T Consensus 16 vi~~ivliGl~lLliw 31 (43)
T 2k9j_B 16 VMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455667787777776
No 11
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=34.05 E-value=18 Score=19.21 Aligned_cols=7 Identities=29% Similarity=0.458 Sum_probs=2.2
Q ss_pred eehhhHH
Q 039458 9 SCRLLCA 15 (179)
Q Consensus 9 ~c~~lc~ 15 (179)
+|+.+.+
T Consensus 2 RcKL~lg 8 (35)
T 2lk9_A 2 RSKLLLG 8 (35)
T ss_dssp ---CHHH
T ss_pred cceeeec
Confidence 4666644
No 12
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=28.52 E-value=13 Score=18.12 Aligned_cols=11 Identities=27% Similarity=0.606 Sum_probs=7.8
Q ss_pred EEEEcCCCeeE
Q 039458 63 VTVRNPSHRVR 73 (179)
Q Consensus 63 l~v~NPN~~~~ 73 (179)
+..+|||++..
T Consensus 6 fllrnpndkye 16 (27)
T 1nro_R 6 FLLRNPNDKYE 16 (27)
T ss_pred ccccCCCcccC
Confidence 35789998753
No 13
>3qde_A Cellobiose phosphorylase; cellulase, phosphate, transferase; 2.40A {Clostridium thermocellum}
Probab=26.55 E-value=1.1e+02 Score=27.84 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=39.1
Q ss_pred eeEeecCCCEEEEeeEEEeeeecCCceEEEEEEEEcCCCeeEEEEeeeEEEEEECCEEEeccccCCceeeC
Q 039458 32 WLSLRPHHPKFHVKQFTLQGLGQTTGYLNVNVTVRNPSHRVRICYDSMRGSVYYKDQRVGVVSVFESHYQE 102 (179)
Q Consensus 32 ~l~lrP~~P~~~v~~~~l~~~~~~~~~ln~~l~v~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~~lp~f~q~ 102 (179)
-|.++|..|.. .+++++. +.+.+.. +.++++||+..- ....++.-+|+.+.... +|-+..+
T Consensus 741 ~L~i~P~LP~~-w~~~~~~-~~~~g~~--~~I~v~~~~~~~-----~~~~~~~~dg~~~~~~~-i~~~~~~ 801 (811)
T 3qde_A 741 GLKIDPCIPKA-WDGYKVT-RYFRGST--YEITVKNPNHVS-----KGVAKITVDGNEISGNI-LPVFNDG 801 (811)
T ss_dssp EEEECCBCCTT-CCEEEEE-EEETTEE--EEEEEECTTCCS-----BCEEEEEETTEECSSSB-CCCCCSS
T ss_pred EEEEeCcCCcc-cCcEEEE-EEECCEE--EEEEEEccCCCC-----CCcEEEEECCEECcCCe-eeecCCC
Confidence 45678888876 6677765 4444333 566778997621 22356677999986666 7765443
No 14
>2v3s_A Serine/threonine-protein kinase OSR1; ATP-binding, magnesium, metal-binding, nucleotide-binding, phosphorylation, polymorphism, transferase; 1.70A {Homo sapiens}
Probab=25.38 E-value=91 Score=20.52 Aligned_cols=15 Identities=13% Similarity=0.344 Sum_probs=12.0
Q ss_pred eEEEEEEEEcCCCee
Q 039458 58 YLNVNVTVRNPSHRV 72 (179)
Q Consensus 58 ~ln~~l~v~NPN~~~ 72 (179)
.+|+.|+.+|+++.+
T Consensus 2 pv~LvLRlRn~~rEL 16 (96)
T 2v3s_A 2 PISLVLRLRNSKKEL 16 (96)
T ss_dssp CEEEEEEEECTTSCE
T ss_pred CeeEEEEeccccchh
Confidence 467899999999754
No 15
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=23.59 E-value=48 Score=19.52 Aligned_cols=17 Identities=24% Similarity=0.677 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHhheeee
Q 039458 17 FFTPIFVVGIIFLILWL 33 (179)
Q Consensus 17 l~~~~~l~g~~~li~~l 33 (179)
+++-+++++++++++|-
T Consensus 16 vl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 16 AFAGLLLLMLLILALWK 32 (54)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444555666667763
No 16
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=23.16 E-value=9.3 Score=20.59 Aligned_cols=8 Identities=38% Similarity=0.920 Sum_probs=4.8
Q ss_pred eeeEeecC
Q 039458 31 LWLSLRPH 38 (179)
Q Consensus 31 ~~l~lrP~ 38 (179)
.|+.+||.
T Consensus 17 YFl~iRPQ 24 (37)
T 2rdd_B 17 YFMILRPQ 24 (37)
T ss_dssp HHHTHHHH
T ss_pred HHHHhhhH
Confidence 34567874
No 17
>2kse_A Sensor protein QSEC; methods development, histidine kinase receptor, membrane domain, two-helical hairpin, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=22.70 E-value=50 Score=22.68 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=13.2
Q ss_pred ccceehhhHHHHHHHHHHHHHHhheeeeEe
Q 039458 6 RSFSCRLLCAIFFTPIFVVGIIFLILWLSL 35 (179)
Q Consensus 6 r~~~c~~lc~~l~~~~~l~g~~~li~~l~l 35 (179)
+|=+.+...+..+.++++++++.+++|..+
T Consensus 8 ~SLr~RL~l~~~~~~~~~~~~~~~~~~~~~ 37 (186)
T 2kse_A 8 LSLRVRLTLIFLILASVTWLLSSFVAWKQT 37 (186)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445554443333444344444444444
No 18
>1nei_A Hypothetical protein YOAG; alpha/beta protein, homodimer, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Escherichia coli} SCOP: d.253.1.1
Probab=22.41 E-value=77 Score=18.88 Aligned_cols=17 Identities=41% Similarity=0.538 Sum_probs=13.4
Q ss_pred EEEEEEcCCCeeEEEEe
Q 039458 61 VNVTVRNPSHRVRICYD 77 (179)
Q Consensus 61 ~~l~v~NPN~~~~i~Y~ 77 (179)
+.|++.|-|.-+++.|+
T Consensus 6 ~~lTvTNnnnGVSVdk~ 22 (60)
T 1nei_A 6 YTVTVTNNSNGVSVDYE 22 (60)
T ss_dssp EEEEEEETTTCCEEEEE
T ss_pred EEEEEEeCCCceEeecc
Confidence 67888898887777775
No 19
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=20.53 E-value=21 Score=22.42 Aligned_cols=13 Identities=15% Similarity=0.682 Sum_probs=3.9
Q ss_pred EEEEEEEEcCCCe
Q 039458 59 LNVNVTVRNPSHR 71 (179)
Q Consensus 59 ln~~l~v~NPN~~ 71 (179)
+|+.++++|||+.
T Consensus 10 v~lki~ir~pnke 22 (89)
T 2kj1_A 10 VNMKIRIKGPNKE 22 (89)
T ss_dssp --------CCCHH
T ss_pred CceEEEecCCCHH
Confidence 4578889999973
Done!