BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039459
(727 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d
Length = 354
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%)
Query: 362 WNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKI 421
WNL +L + L + P L+ GM T+ W E+ L S+ Y+HLG PK
Sbjct: 152 WNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKT 211
Query: 422 WHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEF 481
W+ +P + + + A++ P S + VA +SP+ LK G+P R TQ GEF
Sbjct: 212 WYVVPPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEF 271
Query: 482 VLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNA 517
++ F Y++GF+ GFNC+E++NFA W+ +G+ A
Sbjct: 272 MVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMA 307
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 143 VFYPTEEEFSDTLKYIASVRLK-SEEYGICRIVPPPSWK 180
+F+PT+EEF+D KYIA + + + G+ +I+PP WK
Sbjct: 20 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWK 58
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And
N- Oxalylglycine
Length = 337
Score = 109 bits (273), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%)
Query: 362 WNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKI 421
WNL +L + L + P L+ GM T+ W E+ L S+ Y+HLG PK
Sbjct: 145 WNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKT 204
Query: 422 WHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEF 481
W+ +P + + + A++ P S + VA +SP+ LK G+P R TQ GEF
Sbjct: 205 WYVVPPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEF 264
Query: 482 VLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNA 517
++ F Y++GF+ GFNC+E++NFA W+ +G+ A
Sbjct: 265 MVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMA 300
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 143 VFYPTEEEFSDTLKYIASVRLK-SEEYGICRIVPPPSWK 180
+F+PT+EEF+D KYIA + + + G+ +I+PP WK
Sbjct: 13 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWK 51
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
pdb|4HON|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
Length = 330
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%)
Query: 362 WNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKI 421
WNL +L + L + P L+ GM T+ W E+ L S+ Y+HLG PK
Sbjct: 141 WNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKT 200
Query: 422 WHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEF 481
W+ +P + + + A++ P S + VA +SP+ LK G+P R TQ GEF
Sbjct: 201 WYVVPPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEF 260
Query: 482 VLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNA 517
++ F Y++GF+ GFNC+E++NFA W+ +G+ A
Sbjct: 261 MVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMA 296
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 143 VFYPTEEEFSDTLKYIASVRLK-SEEYGICRIVPPPSWK 180
+F+PT+EEF+D KYIA + + + G+ +I+PP WK
Sbjct: 9 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWK 47
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
pdb|4HOO|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
Length = 330
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 54/156 (34%), Positives = 84/156 (53%)
Query: 362 WNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKI 421
WNL +L + L + P L+ GM T+ W E+ L S+ Y+HLG PK
Sbjct: 141 WNLGHLGTIQDLLEKECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHLGEPKT 200
Query: 422 WHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEF 481
W+ +P + + + A++ P S + VA +SP+ LK G+P R TQ GEF
Sbjct: 201 WYVVPPEHGQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEF 260
Query: 482 VLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNA 517
++ F Y++GF+ GFNC+E++NFA W+ +G+ A
Sbjct: 261 MVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMA 296
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 143 VFYPTEEEFSDTLKYIASVRLK-SEEYGICRIVPPPSWK 180
+F+PT+EEF+D KYIA + + + G+ +I+PP WK
Sbjct: 9 IFHPTKEEFNDFDKYIAYMESQGAHRAGLAKIIPPKEWK 47
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ6|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ7|A Chain A, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OQ7|B Chain B, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OS2|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OS2|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OT7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OT7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OX0|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2OX0|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2VD7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|2VD7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|3NJY|A Chain A, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|3NJY|B Chain B, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|2YBP|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBP|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|A Chain A, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|B Chain B, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|3PDQ|A Chain A, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|3PDQ|B Chain B, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|2YBK|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|2YBK|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|3U4S|A Chain A, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3U4S|B Chain B, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3RVH|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|3RVH|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4AI9|A Chain A, Jmjd2a Complexed With Daminozide
pdb|4AI9|B Chain B, Jmjd2a Complexed With Daminozide
Length = 381
Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 8/197 (4%)
Query: 323 EEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKSGWNLNNLPMLPGSLLSSESCKT 382
EE+E Y +NL TF P + ++K++ WN+ L + L+ ES T
Sbjct: 137 EELERKYWKNL---TFNP--PIYGADVNGTLYEKHVDE-WNIGRLRTIL-DLVEKESGIT 189
Query: 383 C-NLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYL 441
+ P L+ GM TS W E+ L S+ Y+H G PK W+S+P + + + AK +
Sbjct: 190 IEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFF 249
Query: 442 PTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSE 501
P + + + +SP LK G+P + TQ GEF++ F Y++GF+ GFNC+E
Sbjct: 250 PGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAE 309
Query: 502 SVNFAPIEWLPHGQNAI 518
S NFA W+ +G+ A+
Sbjct: 310 STNFATRRWIEYGKQAV 326
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 143 VFYPTEEEFSDTLKYIASVRLK-SEEYGICRIVPPPSWKPPCLVKE-NDIWKSSKFVTQI 200
FYPT EEF + +YIA + + + G+ ++VPP WKP + +D+ + +
Sbjct: 38 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDIDDLVIPAPIQQLV 97
Query: 201 QQIDGLQNQYFSSKAA 216
GL QY K A
Sbjct: 98 TGQSGLFTQYNIQKKA 113
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2P5B|B Chain B, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2Q8C|A Chain A, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8C|B Chain B, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8D|A Chain A, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8D|B Chain B, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8E|A Chain A, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
pdb|2Q8E|B Chain B, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
Length = 352
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 8/197 (4%)
Query: 323 EEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKSGWNLNNLPMLPGSLLSSESCKT 382
EE+E Y +NL TF P + ++K++ WN+ L + L+ ES T
Sbjct: 117 EELERKYWKNL---TFNP--PIYGADVNGTLYEKHVDE-WNIGRLRTIL-DLVEKESGIT 169
Query: 383 C-NLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYL 441
+ P L+ GM TS W E+ L S+ Y+H G PK W+S+P + + + AK +
Sbjct: 170 IEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFF 229
Query: 442 PTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSE 501
P + + + +SP LK G+P + TQ GEF++ F Y++GF+ GFNC+E
Sbjct: 230 PGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAE 289
Query: 502 SVNFAPIEWLPHGQNAI 518
S NFA W+ +G+ A+
Sbjct: 290 STNFATRRWIEYGKQAV 306
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 143 VFYPTEEEFSDTLKYIASVRLK-SEEYGICRIVPPPSWKPPCLVKE-NDIWKSSKFVTQI 200
FYPT EEF + +YIA + + + G+ ++VPP WKP + +D+ + +
Sbjct: 18 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDIDDLVIPAPIQQLV 77
Query: 201 QQIDGLQNQYFSSKAA 216
GL QY K A
Sbjct: 78 TGQSGLFTQYNIQKKA 93
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP3|B Chain B, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP5|A Chain A, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
pdb|2GP5|B Chain B, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
Length = 349
Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 8/197 (4%)
Query: 323 EEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKSGWNLNNLPMLPGSLLSSESCKT 382
EE+E Y +NL TF P + ++K++ WN+ L + L+ ES T
Sbjct: 114 EELERKYWKNL---TFNP--PIYGADVNGTLYEKHVDE-WNIGRLRTIL-DLVEKESGIT 166
Query: 383 C-NLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYL 441
+ P L+ GM TS W E+ L S+ Y+H G PK W+S+P + + + AK +
Sbjct: 167 IEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFF 226
Query: 442 PTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSE 501
P + + + +SP LK G+P + TQ GEF++ F Y++GF+ GFNC+E
Sbjct: 227 PGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAE 286
Query: 502 SVNFAPIEWLPHGQNAI 518
S NFA W+ +G+ A+
Sbjct: 287 STNFATRRWIEYGKQAV 303
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 143 VFYPTEEEFSDTLKYIASVRLK-SEEYGICRIVPPPSWKPPCLVKE-NDIWKSSKFVTQI 200
FYPT EEF + +YIA + + + G+ ++VPP WKP + +D+ + +
Sbjct: 15 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDIDDLVIPAPIQQLV 74
Query: 201 QQIDGLQNQYFSSKAA 216
GL QY K A
Sbjct: 75 TGQSGLFTQYNIQKKA 90
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a
pdb|2WWJ|B Chain B, Structure Of Jmjd2a Complexed With Inhibitor 10a
Length = 348
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 8/197 (4%)
Query: 323 EEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKSGWNLNNLPMLPGSLLSSESCKT 382
EE+E Y +NL TF P + ++K++ WN+ L + L+ ES T
Sbjct: 109 EELERKYWKNL---TFNP--PIYGADVNGTLYEKHVDE-WNIGRLRTIL-DLVEKESGIT 161
Query: 383 C-NLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYL 441
+ P L+ GM TS W E+ L S+ Y+H G PK W+S+P + + + AK +
Sbjct: 162 IEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFF 221
Query: 442 PTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSE 501
P + + + +SP LK G+P + TQ GEF++ F Y++GF+ GFNC+E
Sbjct: 222 PGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAE 281
Query: 502 SVNFAPIEWLPHGQNAI 518
S NFA W+ +G+ A+
Sbjct: 282 STNFATRRWIEYGKQAV 298
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 143 VFYPTEEEFSDTLKYIASVRLK-SEEYGICRIVPPPSWKP 181
FYPT EEF + +YIA + + + G+ ++VPP WKP
Sbjct: 10 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKP 49
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
pdb|2PXJ|B Chain B, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
Length = 347
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 102/197 (51%), Gaps = 8/197 (4%)
Query: 323 EEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKSGWNLNNLPMLPGSLLSSESCKT 382
EE+E Y +NL TF P + ++K++ WN+ L + L+ ES T
Sbjct: 114 EELERKYWKNL---TFNP--PIYGADVNGTLYEKHVDE-WNIGRLRTIL-DLVEKESGIT 166
Query: 383 C-NLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYL 441
+ P L+ GM TS W E+ L S+ Y+H G PK W+S+P + + + AK +
Sbjct: 167 IEGVNTPYLYFGMWKTSFAWHTEDMDLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFF 226
Query: 442 PTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSE 501
P + + + +SP LK G+P + TQ GEF++ F Y++GF+ GFNC+E
Sbjct: 227 PGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAE 286
Query: 502 SVNFAPIEWLPHGQNAI 518
S NFA W+ +G+ A+
Sbjct: 287 STNFATRRWIEYGKQAV 303
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 143 VFYPTEEEFSDTLKYIASVRLK-SEEYGICRIVPPPSWKPPCLVKENDIWKSSKFVTQIQ 201
FYPT EEF + +YIA + + + G+ ++VPP WKP + D IQ
Sbjct: 15 TFYPTMEEFRNFSRYIAYIESQGAHRAGLAKVVPPKEWKPRASYDDID---DLVIPAPIQ 71
Query: 202 QI----DGLQNQYFSSKAA 216
Q+ GL QY K A
Sbjct: 72 QLVTGQSGLFTQYNIQKKA 90
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With
A-Ketoglutarate
pdb|3OPW|A Chain A, Crystal Structure Of The Rph1 Catalytic Core
Length = 373
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 100/388 (25%), Positives = 168/388 (43%), Gaps = 46/388 (11%)
Query: 133 AKNDVLEEAPVFYPTEEEFSDTLKYIASVRLKSEEYGICRIVPPPSWKPPCLVKENDIWK 192
A ++++ PVF PT E+F D Y ++ + G+ +++PP WK D+
Sbjct: 6 APSEIVGGVPVFKPTYEQFEDFYAYCKAINKYGMKSGVVKVIPPKEWKDKL-----DLPY 60
Query: 193 SSKFVTQIQQIDGLQNQYFSSKAAKIYDNVNSNSKRRRSLNTGLQNGVGGNGCTMNLDEA 252
S++ + +I+ +Q +K + NV N ++ N + + +A
Sbjct: 61 SAETLQKIKIKSPIQQHISGNKGLFMVQNVEKN----KTYNIIQWKDLSKDYVPPEDPKA 116
Query: 253 RCTEGFES-ERGPEFTLETFKKY--ADDFKEQYFCTKNIDMTVDENPLVFKKQGEPSLEN 309
R S + + L+ F+ DDF EQ+ ID++ +N L+
Sbjct: 117 RRNSRKGSVSKSTKLKLKNFESSFNIDDF-EQFRTEYTIDLSDFQN--------TERLKF 167
Query: 310 IEGEYRRIIENPTEEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKSGWNLNNLPM 369
+E Y + + T +YG + T GS FP N WN+ LP
Sbjct: 168 LEEYYWKTLNFTTP----MYGAD----TPGSIFPEGLN-------------VWNVAKLP- 205
Query: 370 LPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRY 429
++L K + L+ G+ S W +E+ L S+ Y+H GAPK W+SIPQ
Sbjct: 206 ---NILDHMETKVPGVNDSYLYAGLWKASFSWHLEDQDLYSINYIHFGAPKQWYSIPQED 262
Query: 430 AVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSY 489
KF ++ P + ++ + SP L+ G+ GEF++ + Y
Sbjct: 263 RFKFYKFMQEQFPEEAKNCPEFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGY 322
Query: 490 YSGFDCGFNCSESVNFAPIEWLPHGQNA 517
++GF+ G+N +ESVNFA EWLP G+ A
Sbjct: 323 HAGFNYGYNLAESVNFALEEWLPIGKKA 350
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain
pdb|2XML|B Chain B, Crystal Structure Of Human Jmjd2c Catalytic Domain
Length = 348
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 83/156 (53%)
Query: 362 WNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKI 421
WN+ L + + + P L+ GM T+ W E+ L S+ Y+H G PK
Sbjct: 151 WNIARLNTVLDVVEEECGISIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKS 210
Query: 422 WHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEF 481
W++IP + + + A+ + P+ S + + +SPS LK G+P + TQ GEF
Sbjct: 211 WYAIPPEHGKRLERLAQGFFPSSSQGCDAFLRHKMTLISPSVLKKYGIPFDKITQEAGEF 270
Query: 482 VLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNA 517
++ F Y++GF+ GFNC+ES NFA + W+ +G+ A
Sbjct: 271 MITFPYGYHAGFNHGFNCAESTNFATVRWIDYGKVA 306
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 143 VFYPTEEEFSDTLKYIASVRLK-SEEYGICRIVPPPSWKP-PCLVKENDIWKSSKFVTQI 200
F P+ EEF + KY+A + K + G+ +++PP WKP C +++ + +
Sbjct: 19 TFRPSMEEFREFNKYLAYMESKGAHRAGLAKVIPPKEWKPRQCYDDIDNLLIPAPIQQMV 78
Query: 201 QQIDGLQNQYFSSKAA 216
GL QY K A
Sbjct: 79 TGQSGLFTQYNIQKKA 94
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|B Chain B, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|C Chain C, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
Length = 358
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 82/156 (52%)
Query: 362 WNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKI 421
WNL +L + L + P L+ GM T+ W E+ L S+ Y+H G PK
Sbjct: 171 WNLGHLGTILDLLEQECGVVIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGEPKT 230
Query: 422 WHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEF 481
W+ +P + + A++ P +S + VA +SP+ LK G+P TQ GEF
Sbjct: 231 WYVVPPEHGQHLERLARELFPDISRGCEAFLRHKVALISPTVLKENGIPFNCMTQEAGEF 290
Query: 482 VLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNA 517
++ F Y++GF+ GFNC+E++NFA W+ +G+ A
Sbjct: 291 MVTFPYGYHAGFNHGFNCAEAINFATPRWIDYGKMA 326
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 12/93 (12%)
Query: 129 SPEGAKNDVLEEAPVFYPTEEEFSDTLKYIASVRLK-SEEYGICRIVPPPSWKPPCLVKE 187
SP+ + ++ FYPT EEF+D Y+A + + + + G+ +++PP WK +
Sbjct: 29 SPQNTSHTIM----TFYPTMEEFADFNTYVAYMESQGAHQAGLAKVIPPKEWKARQMY-- 82
Query: 188 NDIWKSSKFVTQIQQI----DGLQNQYFSSKAA 216
+DI + T +QQ+ G+ QY K A
Sbjct: 83 DDI-EDILIATPLQQVTSGQGGVFTQYHKKKKA 114
>pdb|2DTG|E Chain E, Insulin Receptor (Ir) Ectodomain In Complex With Fab's
Length = 897
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 67/179 (37%), Gaps = 28/179 (15%)
Query: 21 PPGFMSLTSFLLKKVE---------NSEESCNSVAFASASAQEPVCANAPSDMVDAGTLK 71
PP F L F+L E + +++C S ++ P+ +N P G L
Sbjct: 494 PPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLM 553
Query: 72 RSLRNRPWILYE-------QSDNNQKESNFEQPVEELSSRATLPKGVIRGCPDCSNCLKV 124
R L +PW Y + ++ + + + + AT P + ++ ++
Sbjct: 554 RGL--KPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQI 611
Query: 125 TARWSPEGAKNDVLEEAPVFYPTEEEFSDTLKYIASVR-LKSEEYGICRIVPPPSWKPP 182
+W P N + VF+ + E S+ + ++ LK +P +W PP
Sbjct: 612 ILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLK---------LPSRTWSPP 661
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
pdb|3EYX|B Chain B, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
Length = 216
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 259 ESERGPEFTLETFKKYADDFKEQYFCTKNIDMTVDENPLVFKKQGEPSLE----NIEGEY 314
+ E P+ KY DD Y +N + K Q E S N++ ++
Sbjct: 120 QREALPKVNCSHLYKYLDDIDTMYH-------EESQNLIHLKTQREKSHYLSHCNVKRQF 172
Query: 315 RRIIENPTEEIEVLYGE 331
RIIENPT + V GE
Sbjct: 173 NRIIENPTVQTAVQNGE 189
>pdb|3LOH|E Chain E, Structure Of The Insulin Receptor Ectodomain, Including Ct
P
Length = 917
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 67/179 (37%), Gaps = 28/179 (15%)
Query: 21 PPGFMSLTSFLLKKVE---------NSEESCNSVAFASASAQEPVCANAPSDMVDAGTLK 71
PP F L F+L E + +++C S ++ P+ +N P G L
Sbjct: 494 PPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLM 553
Query: 72 RSLRNRPWILYE-------QSDNNQKESNFEQPVEELSSRATLPKGVIRGCPDCSNCLKV 124
R L +PW Y + ++ + + + + AT P + ++ ++
Sbjct: 554 RGL--KPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQI 611
Query: 125 TARWSPEGAKNDVLEEAPVFYPTEEEFSDTLKYIASVR-LKSEEYGICRIVPPPSWKPP 182
+W P N + VF+ + E S+ + ++ LK +P +W PP
Sbjct: 612 ILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLK---------LPSRTWSPP 661
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 20/93 (21%)
Query: 31 LLKKVENSEESCNSVAFASASAQEPVCANAPSDMVDAGTLKRSLRNRPWILYEQSDNNQK 90
+++++ N +E CN+ A+ Q+ A + +++ + L S+RNRPW +
Sbjct: 106 VMQRMLNEDELCNAAWLVFANKQDLPEAMSAAEITEKLGL-HSIRNRPWFIQ-------- 156
Query: 91 ESNFEQPVEELSSRATLPKGVIRGCPDCSNCLK 123
++ AT +G+ G SNCLK
Sbjct: 157 -----------ATCATSGEGLYEGLEWLSNCLK 178
>pdb|3ZLI|A Chain A, Crystal Structure Of Jmjc Domain Of Human Histone
Demethylase Uty
pdb|3ZLI|B Chain B, Crystal Structure Of Jmjc Domain Of Human Histone
Demethylase Uty
Length = 478
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 69/171 (40%), Gaps = 27/171 (15%)
Query: 350 EASDHQKYLKSGWNLNNLPMLPGSLLSSESCKTCNLLVPRLH--VGMCFTSIYWKV---- 403
+ SD++K+ L LP + NLL H +GM +Y KV
Sbjct: 160 DLSDNKKWKLQLHELTKLPAF------ARVVSAGNLLTHVGHTILGMNTVQLYMKVPGSR 213
Query: 404 -----EEHCLCSLYYMHLGAPKI-WHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVA 457
E + CS+ +++G W +P+ Y + +K L+F S W W
Sbjct: 214 TPGHQENNNFCSVN-INIGPGDCEWFVVPEDYWGVLNDFCEK--NNLNFLMSSW---WP- 266
Query: 458 SLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPI 508
+ L VPVYR Q PG+ V + +G+ + G+ + + N P+
Sbjct: 267 --NLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAVGWCNNIAWNVGPL 315
>pdb|1ZY9|A Chain A, Crystal Structure Of Alpha-Galactosidase (Ec 3.2.1.22)
(Melibiase) (Tm1192) From Thermotoga Maritima At 2.34 A
Resolution
Length = 564
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 166 EEYGICRIVPPPSWKPPCLVKENDIWKSSKFVTQIQQIDGLQNQYFSSKAAKIYDNVNS 224
+ +G CR+V S+KPP + + W+ + V LQ+ YF ++ K+Y ++S
Sbjct: 75 QSWGPCRVVDAFSFKPPEI---DPNWRYTASVVPDVLERNLQSDYFVAEEGKVYGFLSS 130
>pdb|3W14|E Chain E, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
pdb|3W14|F Chain F, Insulin Receptor Ectodomain Construct Comprising Domains
L1,cr,l2, Fniii-1 And Alphact Peptide In Complex With
Bovine Insulin And Fab 83-14
Length = 609
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 21 PPGFMSLTSFLLKKVE---------NSEESCNSVAFASASAQEPVCANAPSDMVDAGTLK 71
PP F L F+L E + +++C S ++ P+ +N P G L
Sbjct: 494 PPDFRDLLGFMLFYKEAPYQNVTEFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLM 553
Query: 72 RSLRNRPWILY 82
R L +PW Y
Sbjct: 554 RGL--KPWTQY 562
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,426,007
Number of Sequences: 62578
Number of extensions: 963470
Number of successful extensions: 2010
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1969
Number of HSP's gapped (non-prelim): 32
length of query: 727
length of database: 14,973,337
effective HSP length: 106
effective length of query: 621
effective length of database: 8,340,069
effective search space: 5179182849
effective search space used: 5179182849
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)