Query 039459
Match_columns 727
No_of_seqs 272 out of 666
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 09:51:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039459.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039459hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1246 DNA-binding protein ju 100.0 1.7E-74 3.7E-79 690.2 26.0 531 128-687 77-616 (904)
2 KOG0958 DNA damage-responsive 100.0 6.8E-75 1.5E-79 647.5 15.1 312 137-537 11-323 (690)
3 PF02373 JmjC: JmjC domain, hy 100.0 1.2E-33 2.6E-38 256.5 8.1 114 389-505 1-114 (114)
4 smart00545 JmjN Small domain f 99.8 8.5E-20 1.9E-24 140.4 4.5 42 140-181 1-42 (42)
5 PF02375 JmjN: jmjN domain; I 99.6 1.4E-16 3E-21 117.2 3.2 34 142-175 1-34 (34)
6 PF02928 zf-C5HC2: C5HC2 zinc 99.6 1.8E-15 3.8E-20 122.9 4.0 54 612-665 1-54 (54)
7 smart00558 JmjC A domain famil 99.3 7.5E-13 1.6E-17 107.7 3.8 56 361-419 2-57 (57)
8 KOG1246 DNA-binding protein ju 98.1 1.4E-06 2.9E-11 106.5 3.9 174 359-542 604-788 (904)
9 KOG2131 Uncharacterized conser 96.5 0.004 8.7E-08 68.1 6.0 104 389-508 201-304 (427)
10 PF13621 Cupin_8: Cupin-like d 96.5 0.0025 5.3E-08 65.1 4.1 108 387-508 132-248 (251)
11 KOG2130 Phosphatidylserine-spe 94.3 0.03 6.6E-07 60.5 2.9 135 372-512 166-303 (407)
12 KOG1356 Putative transcription 93.8 0.056 1.2E-06 64.7 4.2 111 420-533 740-859 (889)
13 PF08007 Cupin_4: Cupin superf 80.4 4.3 9.3E-05 44.4 7.0 105 385-514 113-218 (319)
14 smart00154 ZnF_AN1 AN1-like Zi 52.5 7.6 0.00016 29.8 1.2 27 612-640 1-28 (39)
15 COG2461 Uncharacterized conser 31.3 32 0.0007 39.0 2.3 44 138-183 197-240 (409)
16 TIGR03792 uncharacterized cyan 28.9 75 0.0016 29.0 3.9 48 423-485 7-54 (90)
17 KOG4611 Uncharacterized conser 28.5 41 0.00089 37.7 2.5 29 630-659 63-91 (747)
18 COG1791 Uncharacterized conser 21.9 75 0.0016 32.4 2.7 44 465-513 111-161 (181)
No 1
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=100.00 E-value=1.7e-74 Score=690.16 Aligned_cols=531 Identities=37% Similarity=0.602 Sum_probs=422.3
Q ss_pred cCCCCCCCCCCCCCccccCChhhhhCHHHHHHHHHhhccccCeeEEcCCCCCCCCCcccccccccCCeeeee-eeeeccc
Q 039459 128 WSPEGAKNDVLEEAPVFYPTEEEFSDTLKYIASVRLKSEEYGICRIVPPPSWKPPCLVKENDIWKSSKFVTQ-IQQIDGL 206 (727)
Q Consensus 128 ~~p~~~~~~~l~e~Pvf~PT~eEF~Dpl~YI~~I~~~a~~yGIcKIVPP~~W~Pp~~~~~~~~~~~~~F~tr-vQ~l~~L 206 (727)
+.+..+.+......+.+.+....|.+...|+..++..++.+|+|.++||..|.+++++..+..|...+|.++ +|.++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (904)
T KOG1246|consen 77 DLTELAKRVISNLKPLLLSIPKNFKDKLLYISKLKLRAEFYGICEKLPPPTSKPKEPLKGKQNWFSSGFDQREVEFIDYP 156 (904)
T ss_pred hhhhhhhcccccccccccccCccccchhhccccccccccccccccccCCcccCCCCcCCcccccccCCCCCcccccccch
Confidence 334444455566667777777899999999999999999999999999999999999999999999999999 8888877
Q ss_pred cccccchhhhh-hhhc-cccccccccccccCcccCCCCC-CccCC--cccccccCCcccccCC-CCCHHHHHHHHHHHHH
Q 039459 207 QNQYFSSKAAK-IYDN-VNSNSKRRRSLNTGLQNGVGGN-GCTMN--LDEARCTEGFESERGP-EFTLETFKKYADDFKE 280 (727)
Q Consensus 207 ~~r~~~~k~~~-~~~~-~~~~~kr~~~~~~~~~~~~~~~-~~~~~--~~e~~~~e~fgf~~g~-~~tl~~F~~~A~~fk~ 280 (727)
+.....+.... +..- ...+.++..+..++.+....+. .+..+ ..+....+.|||++|. .||+..|+++|+.|+.
T Consensus 157 ~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~yt~~~f~~~~~~~~~ 236 (904)
T KOG1246|consen 157 QCNTCSKGKEEKLLLCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPESKPNYKFGFEQGSREYTLPKFEEYADNFKK 236 (904)
T ss_pred hhhccccCCCccceecccccCcccccccCCCCCcCCcCcccCCcccccccCCcccccCcCCCCCccccchhhhHhhhhhc
Confidence 66554443211 0000 0001111111222222111111 11111 1112224789999995 9999999999999999
Q ss_pred HhhccCCCCCCCCCCccccccCCCCChHHHHHHHHhhccCCCCceeeeeccCCCCCCCCCCCCCCCCCCCC-cchhhhhc
Q 039459 281 QYFCTKNIDMTVDENPLVFKKQGEPSLENIEGEYRRIIENPTEEIEVLYGENLETGTFGSGFPTVSNPCEA-SDHQKYLK 359 (727)
Q Consensus 281 ~~f~~~~~~~~~~~n~~~~~~~~~~s~~~vE~efWr~V~~~~~~veV~YGaDl~s~~~GSgFP~~~~~~~~-~~~~~y~~ 359 (727)
.||..+. .. .++++++|++||++|......++|+||+|+.+..+|||||........ ...++|..
T Consensus 237 ~~~~~~~-~~-------------~~~~~~vE~e~w~~v~~~~~~~~~~~g~d~~~~~~~s~~~~~~~~~~~~~~~~~y~~ 302 (904)
T KOG1246|consen 237 DYFPKSK-NS-------------PDSTEDVEKEFWRLVASNLESVEVLYGADLSTKEFGSGFPKSASGPLLGSEAEKYSN 302 (904)
T ss_pred ccccccc-CC-------------CCchHHHHHHHHHhhcccccceeeeeccchhhccccccccccCCCCCCCcchhhhcc
Confidence 9994332 11 133789999999999998889999999999999999999975433222 46689999
Q ss_pred cCCCCCCCCCCCCCCCcccCCCCCCcccceEEeeccCCcccceecCCCceeeeeeeeCCcceEEeeChhhHHHHHHHHHH
Q 039459 360 SGWNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKK 439 (727)
Q Consensus 360 ~~WNLnnlp~~~~SlL~~~~~~I~Gvt~P~LyiGm~fStf~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~ 439 (727)
++|||||+|.+++|+|+|.+.+|+|+++||+|+||+||+||||+|||++||+||+|+|+||+||+||++++++||++|++
T Consensus 303 s~wnL~~i~~~~~svl~~~~~di~g~~~p~l~~gm~fs~~~wh~ed~~~~slny~h~g~pk~wy~v~~~~ae~~e~~~~~ 382 (904)
T KOG1246|consen 303 SGWNLNNIPRLEGSVLSHIDTDISGVTVPWLYIGMCFSTFCWHVEDHSLYSLNYLHLGEPKTWYSVPGSAAEKFEKAMNK 382 (904)
T ss_pred CcccccccccCCccccccccCCcCccccccccccccccccccccCCccccccchhhcCCceEEEecCcchHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCchhhhhchhhhcccccccCccccccCCCceeeeecCCCcEEEEcCCccceeecccccceeeccccCCCcccchhHHHH
Q 039459 440 YLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNAIE 519 (727)
Q Consensus 440 ~~p~~~~~~pd~L~h~~~~isP~~L~~~GIpv~r~vQ~pGEfVvTfP~aYH~gfn~GfN~aEAVNFA~~~Wl~~g~~a~~ 519 (727)
..|+++..+||++++++++++|..|..+||||++++|+|||||||||++||+|||+|||++|+|||||.+||++|+.+++
T Consensus 383 ~~p~~~~~~pd~~~~~~~~~~p~~l~~~gvpv~~~~q~~ge~vitfP~~Y~~g~~~gf~~~e~vn~ap~dwl~~gr~~~~ 462 (904)
T KOG1246|consen 383 LSPGLFIEQPDLLHALVTLMSPNFLTDEGVPVYRTVQNPGEFVITFPRAYHAGFNCGFNFAEAVNFAPSDWLPVGRGAAE 462 (904)
T ss_pred hCCcccccCcccccccccccCcchhhcCCCCceecccCCCCEeecCCCeeeecccccccHHHhcccCCcchhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCccHHHHHHHHHHhhhhhhHHHHhhh-hcCccccchhcccchhhHHHHHHHHHHHHHHhhHHhhhcccccc
Q 039459 520 LYREQGRKTSISHDKLLLGAAREVVKTQWEISLVK-KHTSDNFMWRHVSGKDGILAKALKSRINSESNRRKYLCSSSQSQ 598 (727)
Q Consensus 520 ~y~~~~~~~~~s~d~LL~~~A~~~~~~~~~~~~l~-~~~~~~~~w~~~~~~~~~l~~~l~~~~~~E~~~re~l~~~~~~~ 598 (727)
+|+...+.++|||++|++.+|.+.+...+.+.+.. .+......|+..+...+...-.+..+ |+.+.+.+.
T Consensus 463 ~~~~~~~~~lfs~~~l~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~------ 533 (904)
T KOG1246|consen 463 AYSLLLRLSLFSHDELALLNAENPVKIRKQLSLASDKNDDLAGESKKWLEESGRSKLVIEKY---ERYLLESLP------ 533 (904)
T ss_pred HHHhhccCCccCHHHHHHhccccchhhhhhhccccccchhhhchhhhhhhhcccchhHHHHH---HHHHHHhcc------
Confidence 99999999999999999999998765544333211 11111112211111111111111111 222222211
Q ss_pred ccccccCCCCCcccccccccccccccccCccCCccccccchhhhcCCCCCccEEEEecCHHHHHHHHHHHHhhhhchhhh
Q 039459 599 RMDKNFDYTSKRECNICLYDLHLSAAFCPCSPDIYSCLNHVKQLCSCAWTEKIFLFRYEISELNVLLEAVEGKLSAVYRW 678 (727)
Q Consensus 599 k~~~~~d~~~~~~C~~Ck~~~flS~V~C~c~~~~~~CL~Ha~~lC~C~~~~~~llyRy~~~eL~~lv~~l~~~~~~~~~w 678 (727)
|+..+++|..|+++||++++.|+|.+.+..||.|..++|+|....++++|||++++|..++.+++++...+..|
T Consensus 534 ------~~~~~~~c~~ck~~~~l~~~~~~c~~~~~~cl~h~~~~~~~~~~~~~l~~r~~id~l~~~~~k~~~~~~~~~~~ 607 (904)
T KOG1246|consen 534 ------DDMLERQCEACKRNCFLSEIECKCKPKKLECLSHYKKLCSCPGTDKTLLLRTNIDELDALLDKLQLHELSKLPW 607 (904)
T ss_pred ------chhhHHHHHHhcccHhhhhhhhcccccccccccchhhcCCCCccccEEEEecchhHHHHHhhhhhhhhhhcchh
Confidence 32338999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccc
Q 039459 679 AKDDLKMYL 687 (727)
Q Consensus 679 ~~~~~~~~~ 687 (727)
..++.+..-
T Consensus 608 ~~~~~~~~~ 616 (904)
T KOG1246|consen 608 FGRVDGALP 616 (904)
T ss_pred hhhhhhhhc
Confidence 988887643
No 2
>KOG0958 consensus DNA damage-responsive repressor GIS1/RPH1, jumonji superfamily [Replication, recombination and repair]
Probab=100.00 E-value=6.8e-75 Score=647.49 Aligned_cols=312 Identities=29% Similarity=0.542 Sum_probs=267.3
Q ss_pred CCCCCccccCChhhhhCHHHHHHHHHhhccc-cCeeEEcCCCCCCCCCcccccccccCCeeeeeeeeeccccccccchhh
Q 039459 137 VLEEAPVFYPTEEEFSDTLKYIASVRLKSEE-YGICRIVPPPSWKPPCLVKENDIWKSSKFVTQIQQIDGLQNQYFSSKA 215 (727)
Q Consensus 137 ~l~e~Pvf~PT~eEF~Dpl~YI~~I~~~a~~-yGIcKIVPP~~W~Pp~~~~~~~~~~~~~F~trvQ~l~~L~~r~~~~k~ 215 (727)
...++||||||+|||+||.+||++|+.+|.+ +||+|||||++|+|+...++- +++++...+|++..-+.
T Consensus 11 ps~~I~tF~PtmeEF~dF~~yi~~IEs~G~h~aGlaKVipPkeWk~r~~~~di---~di~I~~PiqQ~v~g~~------- 80 (690)
T KOG0958|consen 11 PSDGIPTFYPTMEEFADFSAYIAYIESQGAHRAGLAKVIPPKEWKPRLMYDDI---DDIKIPAPIQQVVTGQG------- 80 (690)
T ss_pred CCCCcceeCcCHHHHHhHHHHHHHHHhccchhcCeeeeeCCccCCcccccCch---hheecChhHHHHhhccC-------
Confidence 3679999999999999999999999999655 999999999999999766632 46788888887753321
Q ss_pred hhhhhccccccccccccccCcccCCCCCCccCCcccccccCCcccccCCCCCHHHHHHHHHHHHHHhhccCCCCCCCCCC
Q 039459 216 AKIYDNVNSNSKRRRSLNTGLQNGVGGNGCTMNLDEARCTEGFESERGPEFTLETFKKYADDFKEQYFCTKNIDMTVDEN 295 (727)
Q Consensus 216 ~~~~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~e~~~~e~fgf~~g~~~tl~~F~~~A~~fk~~~f~~~~~~~~~~~n 295 (727)
+++.+.+. ...+.|++.+|+++|+. .-||++..
T Consensus 81 -G~F~~~Ni------------------------------------~~~kam~v~q~r~lAns---~~y~tpr~------- 113 (690)
T KOG0958|consen 81 -GLFTQYNI------------------------------------QDKKAMTVRQFRDLANS---DKYCTPRG------- 113 (690)
T ss_pred -ceEEEeeh------------------------------------hhccccChhhhhhhhhh---cccCCCcc-------
Confidence 22222211 12356999999999995 33445542
Q ss_pred ccccccCCCCChHHHHHHHHhhccCCCCceeeeeccCCCCCCCCCCCCCCCCCCCCcchhhhhccCCCCCCCCCCCCCCC
Q 039459 296 PLVFKKQGEPSLENIEGEYRRIIENPTEEIEVLYGENLETGTFGSGFPTVSNPCEASDHQKYLKSGWNLNNLPMLPGSLL 375 (727)
Q Consensus 296 ~~~~~~~~~~s~~~vE~efWr~V~~~~~~veV~YGaDl~s~~~GSgFP~~~~~~~~~~~~~y~~~~WNLnnlp~~~~SlL 375 (727)
.-..+|+|++||+.+... .+.||||+. ||.|+. ....||+++|+...+-
T Consensus 114 --------~~d~~dle~kYWKnltf~----~PiYGaD~~----gSi~~~-------------~~~~WNi~~L~tild~-- 162 (690)
T KOG0958|consen 114 --------SQDFEDLEQKYWKNLTFD----SPIYGADIN----GSIYDE-------------DLDEWNIARLDTILDL-- 162 (690)
T ss_pred --------cccHHHHHHHHHhcccCC----CCcccccCC----CccCcc-------------cccccccccccchhch--
Confidence 134789999999999754 689999999 999963 3567999999972221
Q ss_pred cccCCCCCCcccceEEeeccCCcccceecCCCceeeeeeeeCCcceEEeeChhhHHHHHHHHHHhCchhhhhchhhhccc
Q 039459 376 SSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRW 455 (727)
Q Consensus 376 ~~~~~~I~Gvt~P~LyiGm~fStf~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~p~~~~~~pd~L~h~ 455 (727)
...+..|.|||+|+||+|||.++|+||+||++||||||+|+|+||.||+||++|.++||+++.+.+|+....|++||+|+
T Consensus 163 ~~~~~~i~gvNt~yLyfGmwKttFaWHtEdmDLySINyLHFGaPK~WYaIP~eh~~rfekla~~~fp~~~~~C~aFLRHK 242 (690)
T KOG0958|consen 163 EECGIIIEGVNTPYLYFGMWKTTFAWHTEDMDLYSINYLHFGAPKQWYAIPPEHGDRFEKLASELFPDSSQGCPAFLRHK 242 (690)
T ss_pred hhcceeecccCccceeeeeeecccccccCCccceeeeeeecCCCcceeecCHHHHHHHHHHHHhhCCccccCCHHHHhhc
Confidence 47788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccccccCCCceeeeecCCCcEEEEcCCccceeecccccceeeccccCCCcccchhHHHHHHHhcCCCCCccHHHH
Q 039459 456 VASLSPSPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHGQNAIELYREQGRKTSISHDKL 535 (727)
Q Consensus 456 ~~~isP~~L~~~GIpv~r~vQ~pGEfVvTfP~aYH~gfn~GfN~aEAVNFA~~~Wl~~g~~a~~~y~~~~~~~~~s~d~L 535 (727)
+++++|.+|+++|||++++||++||||||||++||+|||+||||+|++|||++.|++||+.|..|-|... .--||++.+
T Consensus 243 ~~LiSP~~LkqnGIpfn~ivqeagEFmITFPygyHaGFN~GfN~aES~nFat~Rwi~YgK~a~~C~C~~d-~vkism~~f 321 (690)
T KOG0958|consen 243 MTLISPSVLKQNGIPFNRIVQEAGEFMITFPYGYHAGFNHGFNCAESTNFATPRWIDYGKQALLCSCRSD-SVKISMDPF 321 (690)
T ss_pred ccccCHHHHHHcCCCcceeeecCCcEEEecCcccccccccchhhhhhhcccchhhhhhcccccccccccc-eeeeechhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999988743 355777766
Q ss_pred HH
Q 039459 536 LL 537 (727)
Q Consensus 536 L~ 537 (727)
.-
T Consensus 322 vr 323 (690)
T KOG0958|consen 322 VR 323 (690)
T ss_pred hh
Confidence 53
No 3
>PF02373 JmjC: JmjC domain, hydroxylase; InterPro: IPR013129 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with jmjN (see IPR003349 from INTERPRO) and belongs to the Cupin superfamily [].; PDB: 2YU2_A 2YU1_A 3AVR_A 3AVS_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=100.00 E-value=1.2e-33 Score=256.54 Aligned_cols=114 Identities=37% Similarity=0.609 Sum_probs=101.8
Q ss_pred eEEeeccCCcccceecCCCceeeeeeeeCCcceEEeeChhhHHHHHHHHHHhCchhhhhchhhhcccccccCccccccCC
Q 039459 389 RLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEG 468 (727)
Q Consensus 389 ~LyiGm~fStf~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~p~~~~~~pd~L~h~~~~isP~~L~~~G 468 (727)
|||+||.+|+++||+||+.++||||+|.|++|+||+||++++++|++++++. ...++++++.+...+++|+.|+++|
T Consensus 1 ~~~ig~~~s~t~~H~e~~~~~sv~~~~~g~~k~W~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~l~~~g 77 (114)
T PF02373_consen 1 WLYIGMKGSYTPWHIEDNGLSSVNYHHFGGSKVWYIVPPEDADKFEKFLRSK---ESQNCPQFLDHKNIFVSPEQLKKAG 77 (114)
T ss_dssp EEEEE-TTEEEEEEE-GGG-EEEEEEEEESEEEEEEE-GGGHHHHHHHHHHH---HHHHSTTGGCTGGEEEGHHHHHHTT
T ss_pred CEEEeCCCcCCCcEecCCCCceeeeeccCcceEeEEechhhhhhHHHHHhhc---ccccccccccccccccceeeeeccC
Confidence 7999999999999999999999999999999999999999999999999987 4568899999999999999999999
Q ss_pred CceeeeecCCCcEEEEcCCccceeecccccceeeccc
Q 039459 469 VPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNF 505 (727)
Q Consensus 469 Ipv~r~vQ~pGEfVvTfP~aYH~gfn~GfN~aEAVNF 505 (727)
||+++++|+|||+|||+||+||+++|.|+|++|||||
T Consensus 78 i~~~~~~Q~~Ge~V~i~pg~~H~v~n~g~~i~~a~Nf 114 (114)
T PF02373_consen 78 IPVYRFVQKPGEFVFIPPGAYHQVFNLGDNISEAVNF 114 (114)
T ss_dssp S--EEEEEETT-EEEE-TT-EEEEEESSSEEEEEEEE
T ss_pred cccccceECCCCEEEECCCceEEEEeCCceEEEEecC
Confidence 9999999999999999999999999999999999998
No 4
>smart00545 JmjN Small domain found in the jumonji family of transcription factors. To date, this domain always co-occurs with the JmjC domain (although the reverse is not true).
Probab=99.78 E-value=8.5e-20 Score=140.35 Aligned_cols=42 Identities=64% Similarity=1.317 Sum_probs=41.1
Q ss_pred CCccccCChhhhhCHHHHHHHHHhhccccCeeEEcCCCCCCC
Q 039459 140 EAPVFYPTEEEFSDTLKYIASVRLKSEEYGICRIVPPPSWKP 181 (727)
Q Consensus 140 e~Pvf~PT~eEF~Dpl~YI~~I~~~a~~yGIcKIVPP~~W~P 181 (727)
++||||||+|||+||++||++|+++|++|||||||||.+|+|
T Consensus 1 eiPvf~Pt~eEF~Dp~~yi~~i~~~~~~yGi~KIvPP~~w~p 42 (42)
T smart00545 1 EIPVFYPTMEEFKDPLAYISKIRPQAEKYGICKVVPPKSWKP 42 (42)
T ss_pred CCCeEcCCHHHHHCHHHHHHHHHHHHhhCCEEEEECCCCCCc
Confidence 689999999999999999999999999999999999999987
No 5
>PF02375 JmjN: jmjN domain; InterPro: IPR003349 Jumonji protein is required for neural tube formation in mice [].There is evidence of domain swapping within the jumonji family of transcription factors []. This domain is often associated with JmjC (see IPR003347 from INTERPRO).; PDB: 2XML_A 2W2I_C 3DXT_A 3DXU_A 2OX0_B 2OQ6_B 2WWJ_A 2Q8D_A 3PDQ_A 2YBK_A ....
Probab=99.63 E-value=1.4e-16 Score=117.21 Aligned_cols=34 Identities=65% Similarity=1.266 Sum_probs=27.8
Q ss_pred ccccCChhhhhCHHHHHHHHHhhccccCeeEEcC
Q 039459 142 PVFYPTEEEFSDTLKYIASVRLKSEEYGICRIVP 175 (727)
Q Consensus 142 Pvf~PT~eEF~Dpl~YI~~I~~~a~~yGIcKIVP 175 (727)
||||||+|||+||++||++|+++|++||||||||
T Consensus 1 Pvf~Pt~eEF~dp~~yi~~i~~~g~~~Gi~KIvP 34 (34)
T PF02375_consen 1 PVFYPTMEEFKDPIKYISSIEPEGEKYGICKIVP 34 (34)
T ss_dssp EEE---HHHHS-HHHHHHHHHHTTGGGSEEEE--
T ss_pred CcccCCHHHHhCHHHHHHHHHHHHHHCCEEEecC
Confidence 8999999999999999999999999999999998
No 6
>PF02928 zf-C5HC2: C5HC2 zinc finger; InterPro: IPR004198 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a predicted zinc finger with eight potential zinc ligand binding residues. This domain is found in Jumonji [], and may have a DNA binding function. The mouse jumonji protein is required for neural tube formation, and is essential for normal heart development. It also plays a role in the down-regulation of cell proliferation signalling. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005634 nucleus
Probab=99.56 E-value=1.8e-15 Score=122.90 Aligned_cols=54 Identities=43% Similarity=0.880 Sum_probs=52.2
Q ss_pred cccccccccccccccCccCCccccccchhhhcCCCCCccEEEEecCHHHHHHHH
Q 039459 612 CNICLYDLHLSAAFCPCSPDIYSCLNHVKQLCSCAWTEKIFLFRYEISELNVLL 665 (727)
Q Consensus 612 C~~Ck~~~flS~V~C~c~~~~~~CL~Ha~~lC~C~~~~~~llyRy~~~eL~~lv 665 (727)
|.+||++||||+|.|.|++++++||+|+.++|+|+.++++|+|||+++||+.||
T Consensus 1 C~~Ck~~~yLS~v~C~C~~~~~~CL~H~~~~c~C~~~~~~L~yR~~~~eL~~lv 54 (54)
T PF02928_consen 1 CSICKAYCYLSAVTCSCKPDKVVCLRHAKELCSCPCSNHTLRYRYDDEELESLV 54 (54)
T ss_pred CcccCCchhhcccccCCCCCcEEccccchhhcCCCCCCeEEEEeCCHHHHHHhC
Confidence 899999999999999999999999999999999999999999999999999885
No 7
>smart00558 JmjC A domain family that is part of the cupin metalloenzyme superfamily. Probable enzymes, but of unknown functions, that regulate chromatin reorganisation processes (Clissold and Ponting, in press).
Probab=99.33 E-value=7.5e-13 Score=107.73 Aligned_cols=56 Identities=32% Similarity=0.403 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCCCcccCCCCCCcccceEEeeccCCcccceecCCCceeeeeeeeCCc
Q 039459 361 GWNLNNLPMLPGSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAP 419 (727)
Q Consensus 361 ~WNLnnlp~~~~SlL~~~~~~I~Gvt~P~LyiGm~fStf~WH~ED~~l~SINY~H~Gap 419 (727)
+|||+++|. ++++|++++.+++|+++||+|+||.+|+|+||+|++++ +||+|.|+.
T Consensus 2 ~~~l~~lP~-~~~ll~~~~~~~~~~~~~~~~~G~~~s~t~~H~d~~~~--~n~~~~~~~ 57 (57)
T smart00558 2 LNNLAKLPF-KLNLLSDLPEDILGPDVPYLYMGMAGSVTPWHIDDYDL--VNYLHQGAG 57 (57)
T ss_pred cchhhhCCC-cchHHHHCCcccCCCCcceEEEeCCCCccceeEcCCCe--EEEEEecCC
Confidence 699999999 88999999999999999999999999999999999999 999999973
No 8
>KOG1246 consensus DNA-binding protein jumonji/RBP2/SMCY, contains JmjC domain [General function prediction only]
Probab=98.13 E-value=1.4e-06 Score=106.48 Aligned_cols=174 Identities=20% Similarity=0.158 Sum_probs=140.7
Q ss_pred ccCCCCCCCCCCC-----C-CCCcccCCCCCCcccceEEeeccCCcccceecCCCceeeeeeeeCCcceEEeeChhhHHH
Q 039459 359 KSGWNLNNLPMLP-----G-SLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVK 432 (727)
Q Consensus 359 ~~~WNLnnlp~~~-----~-SlL~~~~~~I~Gvt~P~LyiGm~fStf~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~k 432 (727)
..+|...-.-.++ + ++|.|++..+-||++..+|+.-..+.+.-|.|...+.++|.++..+.+.|++||.++...
T Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~e~~~e~~~~~n~~~~~~k~~~~rt~~~~~n~~~~s~~~n~~p~~~~~~~v~~~~~~~ 683 (904)
T KOG1246|consen 604 KLPWFGRVDGALPSLGFRGANLLEHAGEKILGMNTVQCYMKVPGSRTTAHQENSALASININLGPGDCVWFAVPLEYWGV 683 (904)
T ss_pred cchhhhhhhhhhcccccCCcchHHHHHHHhhcccccceeeccccccchhHHHHHHHhhhhccCCcccceeeecccchhHH
Confidence 4577665554443 4 888999999999999999999999999999999999999999987799999999999999
Q ss_pred HHHHHHHhCchhhhhchhhhcccccccCc---cccccCCCceeeeecCCCcEEEEcCCccceeecccccceeeccccCCC
Q 039459 433 FDAAAKKYLPTLSFKQSKWHNRWVASLSP---SPLKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIE 509 (727)
Q Consensus 433 fE~l~~~~~p~~~~~~pd~L~h~~~~isP---~~L~~~GIpv~r~vQ~pGEfVvTfP~aYH~gfn~GfN~aEAVNFA~~~ 509 (727)
+++++.+.-- .++.. -+.| ..|...+|++++.+|++|.++.++.+.||+....||..+-++|.+...
T Consensus 684 ~~~~~~~~~~-------~~~~~---~~w~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~v~~~~ 753 (904)
T KOG1246|consen 684 VEDACEKHNL-------KYSDS---SVWPSSEEELLNLVIPVQKFIQKAGDLVYVGNGTVHWVQVLGFCINVSWNVSEST 753 (904)
T ss_pred HHHHHhhccc-------cccch---hccchhhHHHHhccchHHHHHhccccccccCCceEEEeeecCccccceecccccc
Confidence 9999887421 11111 2333 568889999999999999999999999999999999999999999977
Q ss_pred cccc--hhHHHHHHHhcCCCCCccHHHHHHHHHHh
Q 039459 510 WLPH--GQNAIELYREQGRKTSISHDKLLLGAARE 542 (727)
Q Consensus 510 Wl~~--g~~a~~~y~~~~~~~~~s~d~LL~~~A~~ 542 (727)
--.+ ......+........++++..+-|++|+.
T Consensus 754 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 788 (904)
T KOG1246|consen 754 FAQLALALFRHDHNIESKHPSSVPMSFKVWEMAEK 788 (904)
T ss_pred hhhhhcchhhhhhhhhccCcccchhhhhhhhHhhc
Confidence 4433 22333444444667788888899999975
No 9
>KOG2131 consensus Uncharacterized conserved protein, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=96.52 E-value=0.004 Score=68.14 Aligned_cols=104 Identities=18% Similarity=0.070 Sum_probs=80.4
Q ss_pred eEEeeccCCcccceecCCCceeeeeeeeCCcceEEeeChhhHHHHHHHHHHhCchhhhhchhhhcccccccCccccccCC
Q 039459 389 RLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEG 468 (727)
Q Consensus 389 ~LyiGm~fStf~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~p~~~~~~pd~L~h~~~~isP~~L~~~G 468 (727)
-.|+|-.+|+++.|.+=-.-+|-.-+..| -|.|..+||....++.....+ +..-+.-..|....
T Consensus 201 Fvy~Gp~gSwtp~HaDVf~s~swS~nicG-~KrWl~~pP~qe~~l~dr~gn---------------lp~~~~~~~ld~~~ 264 (427)
T KOG2131|consen 201 FVYAGPAGSWTPFHADVFHSPSWSVNICG-RKRWLLYPPEQEQTLADRYGN---------------LPLPSWITKLDLFR 264 (427)
T ss_pred EEEeccCCCCCccchhhhcCCcceeeeec-ceeEEEeChHHhhhhhhhccC---------------cCCccccccccccc
Confidence 57899999999999776666777777788 699999999996655443222 11223334577778
Q ss_pred CceeeeecCCCcEEEEcCCccceeecccccceeeccccCC
Q 039459 469 VPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPI 508 (727)
Q Consensus 469 Ipv~r~vQ~pGEfVvTfP~aYH~gfn~GfN~aEAVNFA~~ 508 (727)
.+.+.+.|+|||.|++--|=||.+.|.|-.++..=|..-.
T Consensus 265 ~~~lei~Qepge~VFvPsGW~hQV~NL~dTISINHNW~N~ 304 (427)
T KOG2131|consen 265 GPLLEIFQEPGETVFVPSGWHHQVLNLGDTISINHNWCNA 304 (427)
T ss_pred cchhhhhccCCceeeccCccccccccccceeeeccccccc
Confidence 8889999999999999999999999999998877665443
No 10
>PF13621 Cupin_8: Cupin-like domain; PDB: 3AL6_C 3AL5_C 2XUM_A 2Y0I_A 1MZE_A 3KCY_A 1MZF_A 1YCI_A 2ILM_A 1H2L_A ....
Probab=96.49 E-value=0.0025 Score=65.05 Aligned_cols=108 Identities=16% Similarity=0.166 Sum_probs=66.5
Q ss_pred cceEEeeccCCcccceecCCCceeeeeeeeCCcceEEeeChhhHHHHHHHHHHhCchhhhhchhhhcccccccCc---cc
Q 039459 387 VPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSP---SP 463 (727)
Q Consensus 387 ~P~LyiGm~fStf~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~p~~~~~~pd~L~h~~~~isP---~~ 463 (727)
..+|+||..+|.+.+|.+. ..+++-+..|. |.|+-+||++...+ .+..... -.....++.+ +.
T Consensus 132 ~~~l~ig~~gs~t~lH~D~--~~n~~~~i~G~-K~~~L~pP~~~~~l-------~~~~~~~----~~~~~~~~d~~~~d~ 197 (251)
T PF13621_consen 132 SSNLWIGPPGSFTPLHYDP--SHNLLAQIRGR-KRWILFPPDDSPNL-------YPRPDSH----GGTVFSWVDPDNPDL 197 (251)
T ss_dssp EEEEEEE-TTEEEEEEE-S--SEEEEEEEESE-EEEEEE-GGGGGGC-------TBETTTS----T-TCBBSS-TTS--T
T ss_pred ccEEEEeCCCceeeeeECc--hhhhhhccCCC-EEEEEECCcccccc-------ccceecc----cccceeeeeccChhh
Confidence 5569999999999999977 45777777885 99999999986543 1110000 0000111221 11
Q ss_pred ---cccCCCceeeeecCCCcEEEEcCCccceeecc---cccceeeccccCC
Q 039459 464 ---LKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDC---GFNCSESVNFAPI 508 (727)
Q Consensus 464 ---L~~~GIpv~r~vQ~pGEfVvTfP~aYH~gfn~---GfN~aEAVNFA~~ 508 (727)
-.-..++.+.++++|||.+++-+|-+|.+.|. ++|++-.++|-+.
T Consensus 198 ~~~p~~~~~~~~~~~l~pGD~LfiP~gWwH~V~~~~~~~~sisvn~w~~~~ 248 (251)
T PF13621_consen 198 ERFPKFRKAPPYEVVLEPGDVLFIPPGWWHQVENLSDDDLSISVNYWFRTP 248 (251)
T ss_dssp TT-CGGGG--EEEEEEETT-EEEE-TT-EEEEEESTTSSCEEEEEEEEESS
T ss_pred hhhhhhccCceeEEEECCCeEEEECCCCeEEEEEcCCCCeEEEEEEEeccc
Confidence 01122389999999999999999999999999 4677776666543
No 11
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=94.29 E-value=0.03 Score=60.47 Aligned_cols=135 Identities=17% Similarity=0.168 Sum_probs=88.8
Q ss_pred CCCCcccCCCCCCcccceEEeeccCCcccceecCCCceeeeeeeeCCcceEEeeChhhHHHHHHHHHHhCchhhhhchhh
Q 039459 372 GSLLSSESCKTCNLLVPRLHVGMCFTSIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFKQSKW 451 (727)
Q Consensus 372 ~SlL~~~~~~I~Gvt~P~LyiGm~fStf~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~p~~~~~~pd~ 451 (727)
..|+.+++.. .-=---|+-+|-..|.+.||++...+-.-|-+..| -|.|.-+|+.--..+-++. ++.-.+|++=
T Consensus 166 dDlF~y~g~e-~RPpyRWfvmGParSGtsiHIDPlgTSAWNtll~G-hKrW~LfPp~~p~~lvkv~----~~e~g~~~de 239 (407)
T KOG2130|consen 166 DDLFQYLGEE-RRPPYRWFVMGPARSGTSIHIDPLGTSAWNTLLQG-HKRWVLFPPGTPPELVKVT----VDEGGKQPDE 239 (407)
T ss_pred HHHHHhcCcc-cCCCceeEEecCCCCCceeEECCcchHHHHHHhhc-cceeEEcCCCCCCCceeec----ccccCCCCcc
Confidence 3455555432 11123499999999999999999999999999999 5999999997633322222 1222244431
Q ss_pred hcccccccCcc-c--cccCCCceeeeecCCCcEEEEcCCccceeecccccceeeccccCCCccc
Q 039459 452 HNRWVASLSPS-P--LKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLP 512 (727)
Q Consensus 452 L~h~~~~isP~-~--L~~~GIpv~r~vQ~pGEfVvTfP~aYH~gfn~GfN~aEAVNFA~~~Wl~ 512 (727)
.----..+-|. . +-..--.-.-++|.|||-|++--|=+|.++|.-..+|..-|||...=++
T Consensus 240 ~itwf~~~y~rt~~Pswp~E~kPIEc~q~pGEt~fVP~GWWHvVlNle~TIAiTqNf~s~eNf~ 303 (407)
T KOG2130|consen 240 IITWFSTIYPRTQLPSWPDEYKPIECLQKPGETMFVPSGWWHVVLNLEPTIAITQNFASKENFP 303 (407)
T ss_pred eechhhhccccccCCCCccccCCceeeecCCceEEecCCeEEEEeccCceeeeeeccccccCCc
Confidence 10000001111 0 0011122346889999999999999999999999999999999877544
No 12
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=93.82 E-value=0.056 Score=64.68 Aligned_cols=111 Identities=16% Similarity=0.133 Sum_probs=80.3
Q ss_pred ceEEeeChhhHHHHHHHHHHhCchhhhhch---hhhcccccccCcc---ccc-cCCCceeeeecCCCcEEEEcCCcccee
Q 039459 420 KIWHSIPQRYAVKFDAAAKKYLPTLSFKQS---KWHNRWVASLSPS---PLK-SEGVPVYRCTQSPGEFVLVFSGSYYSG 492 (727)
Q Consensus 420 K~WY~VP~~~~~kfE~l~~~~~p~~~~~~p---d~L~h~~~~isP~---~L~-~~GIpv~r~vQ~pGEfVvTfP~aYH~g 492 (727)
-.|-+....++.|++++++++-++.-..-+ +=+|.+.+.+.-. .|+ +.||.-..++|..||.||+-.||-|.+
T Consensus 740 ALWhIF~~~Dv~KireyL~k~~~E~~~~~~~v~hPIhDQS~YLd~~lr~RLkeEyGVe~WtfvQ~LGdAVfIPAGaPHQV 819 (889)
T KOG1356|consen 740 ALWHIFRAQDVPKIREYLRKVCKEQGHEVPKVHHPIHDQSWYLDRYLRRRLKEEYGVEPWTFVQFLGDAVFIPAGAPHQV 819 (889)
T ss_pred chhhhhhhcchHHHHHHHHHhhHHhcCCCCcccCCCcccceeccHHHHHHHHHHhCCCccchhhcccceEEecCCCcHHh
Confidence 489999999999999999998665322111 1122222233321 233 469999999999999999999999999
Q ss_pred ecccccceeeccccCCCcccchhHHHHHHHhcCCCC--CccHH
Q 039459 493 FDCGFNCSESVNFAPIEWLPHGQNAIELYREQGRKT--SISHD 533 (727)
Q Consensus 493 fn~GfN~aEAVNFA~~~Wl~~g~~a~~~y~~~~~~~--~~s~d 533 (727)
.|.--++..|+-|..|.-+.. |+....+.+.+| .+.|+
T Consensus 820 rNLkSCikVa~DFVSPE~v~e---c~rLT~EfR~Lp~~h~~~e 859 (889)
T KOG1356|consen 820 RNLKSCIKVAEDFVSPEHVSE---CFRLTQEFRQLPQNHKNHE 859 (889)
T ss_pred hhhhhHHHHHHhhCChhhHHH---HHHHHHHHhhCCCcccchH
Confidence 999999999999999976654 444444444444 55554
No 13
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors. The fold is also found in lysine-specific demethylase NO66.; PDB: 2XDV_A 1VRB_B 4DIQ_B.
Probab=80.43 E-value=4.3 Score=44.42 Aligned_cols=105 Identities=15% Similarity=0.135 Sum_probs=65.8
Q ss_pred cccceEEeeccCC-cccceecCCCceeeeeeeeCCcceEEeeChhhHHHHHHHHHHhCchhhhhchhhhcccccccCccc
Q 039459 385 LLVPRLHVGMCFT-SIYWKVEEHCLCSLYYMHLGAPKIWHSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSP 463 (727)
Q Consensus 385 vt~P~LyiGm~fS-tf~WH~ED~~l~SINY~H~GapK~WY~VP~~~~~kfE~l~~~~~p~~~~~~pd~L~h~~~~isP~~ 463 (727)
-..-.+|++-..+ .|..|.+++...-| -.-+.|.|..-++.. + ...+-.+ .+-.
T Consensus 113 ~~~~n~Y~tp~g~~g~~~H~D~~dvfvl---Q~~G~K~W~l~~~~~------------~-----~~~~~~~-----~~~~ 167 (319)
T PF08007_consen 113 PVGANAYLTPPGSQGFGPHYDDHDVFVL---QLEGRKRWRLYPPPD------------E-----PAPLYSD-----QPFK 167 (319)
T ss_dssp -EEEEEEEETSSBEESECEE-SSEEEEE---EEES-EEEEEE-SCC------------C-----TTTSSCE-------TT
T ss_pred ccceEEEecCCCCCCccCEECCcccEEE---ECCceeEEEECCCCc------------c-----cccccCC-----CCcc
Confidence 4556789998885 69999999766543 344579999887110 0 0000000 0111
Q ss_pred cccCCCceeeeecCCCcEEEEcCCccceeecccccceeeccccCCCcccch
Q 039459 464 LKSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNFAPIEWLPHG 514 (727)
Q Consensus 464 L~~~GIpv~r~vQ~pGEfVvTfP~aYH~gfn~GfN~aEAVNFA~~~Wl~~g 514 (727)
..+..-|+..++=+||+.+..-+|.+|.+.+.|.++.-+++|-+++|..+-
T Consensus 168 ~~~~~~~~~~~~L~pGD~LYlPrG~~H~~~~~~~S~hltv~~~~~t~~dl~ 218 (319)
T PF08007_consen 168 QLEEFEPVEEVVLEPGDVLYLPRGWWHQAVTTDPSLHLTVGFRAPTWADLL 218 (319)
T ss_dssp TCG--STSEEEEE-TT-EEEE-TT-EEEEEESS-EEEEEEEECCEBHHHHH
T ss_pred ccccCceeEEEEECCCCEEEECCCccCCCCCCCCceEEEEeeeCCchhhHH
Confidence 123336788899999999999999999999999999999999999888753
No 14
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=52.50 E-value=7.6 Score=29.84 Aligned_cols=27 Identities=26% Similarity=0.605 Sum_probs=22.7
Q ss_pred cccccccccccccccC-ccCCccccccchh
Q 039459 612 CNICLYDLHLSAAFCP-CSPDIYSCLNHVK 640 (727)
Q Consensus 612 C~~Ck~~~flS~V~C~-c~~~~~~CL~Ha~ 640 (727)
|.+|+...+|..+.|. |. .++|+.|-.
T Consensus 1 C~~C~~~~~l~~f~C~~C~--~~FC~~HR~ 28 (39)
T smart00154 1 CHFCRKKVGLTGFKCRHCG--NLFCGEHRL 28 (39)
T ss_pred CcccCCcccccCeECCccC--CccccccCC
Confidence 7899999999878898 65 589999953
No 15
>COG2461 Uncharacterized conserved protein [Function unknown]
Probab=31.28 E-value=32 Score=38.98 Aligned_cols=44 Identities=30% Similarity=0.659 Sum_probs=36.3
Q ss_pred CCCCccccCChhhhhCHHHHHHHHHhhccccCeeEEcCCCCCCCCC
Q 039459 138 LEEAPVFYPTEEEFSDTLKYIASVRLKSEEYGICRIVPPPSWKPPC 183 (727)
Q Consensus 138 l~e~Pvf~PT~eEF~Dpl~YI~~I~~~a~~yGIcKIVPP~~W~Pp~ 183 (727)
..|.-+||||.-+--++-.| ..|+.+-..+|-+||+|| .|+|.-
T Consensus 197 FkEe~Ilypt~~d~~te~ew-~~i~~~~~eigy~~i~p~-~w~p~~ 240 (409)
T COG2461 197 FKEENILYPTLLDLLTEGEW-EAIKEQSKEIGYAKIKPP-KWKPKK 240 (409)
T ss_pred HhhhhhHHhHHHHhcCHHHH-HHHHhcCcccceEEecCc-cccCcc
Confidence 55788899998877776555 468888999999999999 899963
No 16
>TIGR03792 uncharacterized cyanobacterial protein, TIGR03792 family. Members of this family are found, no more than one to a genome, exclusively in (but not universal to) the Cyanobacteria. These proteins are small, 100-150 amino acids. The function is unknown.
Probab=28.93 E-value=75 Score=28.99 Aligned_cols=48 Identities=21% Similarity=0.251 Sum_probs=37.6
Q ss_pred EeeChhhHHHHHHHHHHhCchhhhhchhhhcccccccCccccccCCCceeeeecCCCcEEEEc
Q 039459 423 HSIPQRYAVKFDAAAKKYLPTLSFKQSKWHNRWVASLSPSPLKSEGVPVYRCTQSPGEFVLVF 485 (727)
Q Consensus 423 Y~VP~~~~~kfE~l~~~~~p~~~~~~pd~L~h~~~~isP~~L~~~GIpv~r~vQ~pGEfVvTf 485 (727)
+-||+...+.|+++.+...-..+..++.|+.+ .|.+..+.|+++++..
T Consensus 7 ~~V~p~~~~~f~~a~~~~w~~~l~~~~GFlg~---------------ev~~~~e~pee~~llI 54 (90)
T TIGR03792 7 FKVPPEDREAFLEADEEIWTPWLAKQPGFLGK---------------EVWWDPEKPEEGVLLI 54 (90)
T ss_pred EeeChhhHHHHHHHHHHHHHHHHHhCCCccce---------------EEEecCCCCCEEEEEE
Confidence 46899999999999999866677788888655 4456667789988764
No 17
>KOG4611 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.55 E-value=41 Score=37.68 Aligned_cols=29 Identities=31% Similarity=0.631 Sum_probs=22.0
Q ss_pred CCccccccchhhhcCCCCCccEEEEecCHH
Q 039459 630 PDIYSCLNHVKQLCSCAWTEKIFLFRYEIS 659 (727)
Q Consensus 630 ~~~~~CL~Ha~~lC~C~~~~~~llyRy~~~ 659 (727)
|+...||++-...|-|+.+. +|.+|-.--
T Consensus 63 pdqtgclncnngtchcpsqs-tlifrdasg 91 (747)
T KOG4611|consen 63 PDQTGCLNCNNGTCHCPSQS-TLIFRDASG 91 (747)
T ss_pred CccCCceecCCCccCCCCcc-eEEEEcCCC
Confidence 57788999999999998655 577774433
No 18
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=21.90 E-value=75 Score=32.36 Aligned_cols=44 Identities=32% Similarity=0.508 Sum_probs=34.0
Q ss_pred ccCCCceeeeecCCCcEEEEcCCccceeecccccceeeccc-------cCCCcccc
Q 039459 465 KSEGVPVYRCTQSPGEFVLVFSGSYYSGFDCGFNCSESVNF-------APIEWLPH 513 (727)
Q Consensus 465 ~~~GIpv~r~vQ~pGEfVvTfP~aYH~gfn~GfN~aEAVNF-------A~~~Wl~~ 513 (727)
....=++|.+.-.+|++|.+-||.||| |.+.|+-|| +++.|.+.
T Consensus 111 ~~~d~~~~~i~c~~gDLI~vP~gi~Hw-----Ftlt~~~~f~AvRlF~~~~gWVa~ 161 (181)
T COG1791 111 HSPDGKVYQIRCEKGDLISVPPGIYHW-----FTLTESPNFKAVRLFTEPEGWVAI 161 (181)
T ss_pred ECCCCcEEEEEEccCCEEecCCCceEE-----EEccCCCcEEEEEEeeCCCCceee
Confidence 344448899999999999999999998 555666666 46678864
Done!