BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>039460
CLEQERSALIQLKHFFNDNQRLQNWADAANDENYSNCCQWEAVEKATYECSLFTPFQQLE
SLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNR
LNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCIQDLIYLGGNLPRKTLQQTKISE
GK

High Scoring Gene Products

Symbol, full name Information P value
RLP14
AT1G74180 		protein from Arabidopsis thaliana 0.00049
RLP56
AT5G49290 		protein from Arabidopsis thaliana 0.00067

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  039460
        (182 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2037308 - symbol:RLP14 "AT1G74180" species:370...    79  0.00049   3
TAIR|locus:2155909 - symbol:RLP56 "AT5G49290" species:370...    77  0.00067   2


>TAIR|locus:2037308 [details] [associations]
            symbol:RLP14 "AT1G74180" species:3702 "Arabidopsis
            thaliana" [GO:0007165 "signal transduction" evidence=IC]
            [GO:0009507 "chloroplast" evidence=IDA] Pfam:PF00560
            InterPro:IPR001611 PROSITE:PS51450 EMBL:CP002684 GO:GO:0009507
            InterPro:IPR013210 Pfam:PF08263 IPI:IPI00525645 RefSeq:NP_177558.4
            UniGene:At.52506 ProteinModelPortal:F4HTV4 SMR:F4HTV4 PRIDE:F4HTV4
            EnsemblPlants:AT1G74180.1 GeneID:843758 KEGG:ath:AT1G74180
            OMA:HELYLEG Uniprot:F4HTV4
        Length = 976

 Score = 79 (32.9 bits), Expect = 0.00049, Sum P(3) = 0.00049
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query:     1 CLEQERSALIQLKHFFNDNQRLQNWA-DAA----NDENYSNCCQWEAVE 44
             C+E+ER AL++LK +     +  +W  D+      ++  SNCC+WE ++
Sbjct:    27 CIEKERKALLELKKYMIS--KTADWGLDSVLPTWTNDTKSNCCRWEGLK 73

 Score = 70 (29.7 bits), Expect = 0.00049, Sum P(3) = 0.00049
 Identities = 21/53 (39%), Positives = 28/53 (52%)

Query:    44 EKATYECSLFTPFQQLESLDLIG---NNIVGCVEN-EGLGRLSRLSNLKFLRL 92
             E +    SL  PF++L SL+L G   N   G  ++ EG   L RL NL+ L L
Sbjct:    93 ESSLLNLSLLHPFEELRSLNLSGEIYNEFNGLFDDVEGYESLRRLRNLEILDL 145

 Score = 39 (18.8 bits), Expect = 0.00049, Sum P(3) = 0.00049
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query:   163 YLGGNLPRKTLQQ-TKI 178
             Y+GG LP K L+  TK+
Sbjct:   173 YIGGPLPIKELKNLTKL 189


>TAIR|locus:2155909 [details] [associations]
            symbol:RLP56 "AT5G49290" species:3702 "Arabidopsis
            thaliana" [GO:0007165 "signal transduction" evidence=IC]
            Pfam:PF00560 InterPro:IPR001611 PROSITE:PS51450 EMBL:CP002688
            InterPro:IPR013210 Pfam:PF08263 IPI:IPI00518781 RefSeq:NP_199740.4
            UniGene:At.55450 ProteinModelPortal:F4K4T3 SMR:F4K4T3
            EnsemblPlants:AT5G49290.1 GeneID:834989 KEGG:ath:AT5G49290
            OMA:RCEECEY ArrayExpress:F4K4T3 Uniprot:F4K4T3
        Length = 908

 Score = 77 (32.2 bits), Expect = 0.00067, Sum P(2) = 0.00067
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query:    43 VEKATYECSLFTPFQQLESLDLIGNNIVGCVEN-EGLGRLSRLSNLKFL 90
             +E +    SL  PF+++ SLDL  + + G V++ EG   L RL NL+ L
Sbjct:    78 LEISLLNLSLLHPFEEVRSLDLSNSRLNGLVDDVEGYKSLRRLRNLQIL 126

 Score = 76 (31.8 bits), Expect = 0.00067, Sum P(2) = 0.00067
 Identities = 19/51 (37%), Positives = 27/51 (52%)

Query:     1 CLEQERSALIQLKHFFND-------NQRLQNWADAANDENYSNCCQWEAVE 44
             C+E+ER AL++LK F          +  L  W    ND   S+CCQWE ++
Sbjct:    13 CIEKERKALLELKKFVMSRCEECEYDSVLPTWT---NDTK-SDCCQWENIK 59


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.137   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      182       151   0.00097  104 3  11 22  0.47    31
                                                     30  0.40    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  597 (63 KB)
  Total size of DFA:  158 KB (2094 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.86u 0.12s 12.98t   Elapsed:  00:00:01
  Total cpu time:  12.87u 0.12s 12.99t   Elapsed:  00:00:01
  Start:  Sat May 11 02:35:44 2013   End:  Sat May 11 02:35:45 2013

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