Query 039460
Match_columns 182
No_of_seqs 205 out of 1632
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 09:52:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039460.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/039460hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 2.4E-21 5.2E-26 175.4 12.4 164 2-179 27-239 (968)
2 PLN03150 hypothetical protein; 99.7 1.2E-17 2.6E-22 145.0 9.9 140 2-158 370-510 (623)
3 PLN00113 leucine-rich repeat r 99.5 5E-14 1.1E-18 128.0 6.6 92 51-151 158-249 (968)
4 KOG0617 Ras suppressor protein 99.3 3.1E-14 6.7E-19 103.6 -3.9 119 50-180 49-177 (264)
5 PLN03150 hypothetical protein; 99.2 1.1E-11 2.4E-16 108.0 6.6 94 50-151 435-528 (623)
6 KOG0617 Ras suppressor protein 99.2 2.3E-12 4.9E-17 93.9 -1.0 115 52-179 28-153 (264)
7 PF08263 LRRNT_2: Leucine rich 99.1 2.9E-10 6.3E-15 64.6 4.4 41 2-46 1-43 (43)
8 PF13855 LRR_8: Leucine rich r 98.9 9.8E-10 2.1E-14 67.1 3.8 61 57-121 1-61 (61)
9 PF13855 LRR_8: Leucine rich r 98.9 2.1E-09 4.6E-14 65.6 3.4 61 85-150 1-61 (61)
10 PF14580 LRR_9: Leucine-rich r 98.8 3.1E-09 6.6E-14 78.4 4.1 102 52-166 36-147 (175)
11 KOG0444 Cytoskeletal regulator 98.8 5E-10 1.1E-14 95.6 -0.4 119 50-180 96-226 (1255)
12 KOG0444 Cytoskeletal regulator 98.8 2.1E-10 4.6E-15 97.8 -3.2 118 50-179 215-342 (1255)
13 KOG4194 Membrane glycoprotein 98.7 2.4E-09 5.3E-14 90.6 -0.5 79 51-133 263-341 (873)
14 KOG4194 Membrane glycoprotein 98.7 1.8E-09 3.8E-14 91.4 -1.6 92 51-151 287-378 (873)
15 KOG0472 Leucine-rich repeat pr 98.7 8.4E-09 1.8E-13 84.0 2.2 90 50-151 428-541 (565)
16 PF14580 LRR_9: Leucine-rich r 98.6 2.5E-08 5.5E-13 73.6 3.2 95 53-161 15-115 (175)
17 KOG0618 Serine/threonine phosp 98.5 7.3E-09 1.6E-13 91.3 -2.1 90 50-151 376-465 (1081)
18 KOG0472 Leucine-rich repeat pr 98.5 6.3E-09 1.4E-13 84.7 -2.4 91 50-153 199-290 (565)
19 PLN03210 Resistant to P. syrin 98.4 2.1E-06 4.5E-11 80.1 9.3 86 53-149 630-715 (1153)
20 KOG4237 Extracellular matrix p 98.4 1.4E-07 3.1E-12 76.6 1.4 91 52-151 269-359 (498)
21 PF12799 LRR_4: Leucine Rich r 98.4 6.4E-07 1.4E-11 50.9 3.7 36 86-122 2-37 (44)
22 PRK15387 E3 ubiquitin-protein 98.3 1.4E-06 3E-11 77.6 7.4 17 162-179 432-448 (788)
23 PRK15370 E3 ubiquitin-protein 98.3 6E-06 1.3E-10 73.6 11.1 55 58-122 200-254 (754)
24 PRK15387 E3 ubiquitin-protein 98.2 8.7E-07 1.9E-11 78.8 3.6 65 86-160 403-467 (788)
25 KOG0532 Leucine-rich repeat (L 98.2 5.5E-08 1.2E-12 82.2 -3.7 89 50-151 114-202 (722)
26 PLN03210 Resistant to P. syrin 98.2 6.1E-06 1.3E-10 77.0 7.7 59 57-120 778-836 (1153)
27 KOG4237 Extracellular matrix p 98.1 4.7E-07 1E-11 73.7 -0.7 97 43-151 51-153 (498)
28 KOG4658 Apoptotic ATPase [Sign 98.1 1.3E-06 2.9E-11 78.9 2.1 86 53-148 567-652 (889)
29 cd00116 LRR_RI Leucine-rich re 98.1 1.6E-06 3.4E-11 69.2 1.9 90 57-151 137-234 (319)
30 PRK15370 E3 ubiquitin-protein 98.0 1.2E-05 2.7E-10 71.6 7.1 77 57-151 220-296 (754)
31 KOG1259 Nischarin, modulator o 98.0 1.4E-06 3.1E-11 69.0 0.8 59 57-122 284-342 (490)
32 KOG0618 Serine/threonine phosp 98.0 9.6E-07 2.1E-11 78.3 -0.5 82 58-151 46-127 (1081)
33 KOG0532 Leucine-rich repeat (L 98.0 6.6E-07 1.4E-11 75.8 -1.9 89 50-151 159-247 (722)
34 PF12799 LRR_4: Leucine Rich r 98.0 7.7E-06 1.7E-10 46.4 3.0 37 109-151 1-37 (44)
35 KOG1259 Nischarin, modulator o 97.9 3.1E-06 6.8E-11 67.1 0.8 85 53-151 303-387 (490)
36 cd00116 LRR_RI Leucine-rich re 97.9 3.7E-06 8E-11 67.0 0.5 62 85-151 137-206 (319)
37 KOG4579 Leucine-rich repeat (L 97.8 2.2E-06 4.8E-11 60.6 -2.1 87 53-151 49-136 (177)
38 COG4886 Leucine-rich repeat (L 97.7 2.2E-05 4.8E-10 64.8 2.5 83 57-151 116-199 (394)
39 COG4886 Leucine-rich repeat (L 97.6 2E-05 4.3E-10 65.1 0.9 87 50-148 132-219 (394)
40 KOG2739 Leucine-rich acidic nu 97.6 4.9E-05 1.1E-09 58.8 2.5 102 55-166 41-150 (260)
41 KOG1859 Leucine-rich repeat pr 97.5 7.8E-06 1.7E-10 71.4 -2.5 86 53-153 183-269 (1096)
42 KOG4658 Apoptotic ATPase [Sign 97.4 7E-05 1.5E-09 68.0 1.7 85 56-149 544-629 (889)
43 KOG3207 Beta-tubulin folding c 97.2 6.8E-05 1.5E-09 62.0 -0.1 13 139-151 247-259 (505)
44 KOG0531 Protein phosphatase 1, 97.2 0.0002 4.3E-09 59.9 2.0 85 53-151 91-175 (414)
45 KOG1644 U2-associated snRNP A' 97.1 0.0012 2.6E-08 49.7 4.9 93 57-161 42-142 (233)
46 KOG0531 Protein phosphatase 1, 97.0 0.00018 3.8E-09 60.1 0.2 85 53-151 114-199 (414)
47 KOG1859 Leucine-rich repeat pr 96.9 5.5E-05 1.2E-09 66.3 -3.5 89 51-151 203-292 (1096)
48 KOG4579 Leucine-rich repeat (L 96.5 0.00016 3.5E-09 51.3 -2.8 68 55-129 75-142 (177)
49 PF00560 LRR_1: Leucine Rich R 96.4 0.0015 3.2E-08 31.2 0.9 21 110-131 1-21 (22)
50 KOG1644 U2-associated snRNP A' 96.3 0.0069 1.5E-07 45.7 4.4 86 50-147 57-149 (233)
51 KOG0473 Leucine-rich repeat pr 96.2 7.1E-05 1.5E-09 57.5 -6.7 92 50-153 35-126 (326)
52 KOG3207 Beta-tubulin folding c 96.0 0.0022 4.8E-08 53.3 0.5 92 55-151 220-314 (505)
53 KOG2739 Leucine-rich acidic nu 95.5 0.0083 1.8E-07 46.7 2.1 68 50-123 58-130 (260)
54 KOG3665 ZYG-1-like serine/thre 95.3 0.0081 1.7E-07 53.5 1.5 93 54-153 170-265 (699)
55 KOG1909 Ran GTPase-activating 95.2 0.0034 7.4E-08 50.8 -1.0 94 52-150 208-310 (382)
56 KOG2982 Uncharacterized conser 95.1 0.0069 1.5E-07 48.4 0.5 65 56-122 70-134 (418)
57 KOG3665 ZYG-1-like serine/thre 95.1 0.0091 2E-07 53.2 1.1 86 55-151 146-233 (699)
58 PF13504 LRR_7: Leucine rich r 94.4 0.026 5.7E-07 25.0 1.2 11 111-121 3-13 (17)
59 KOG2123 Uncharacterized conser 94.0 0.0035 7.6E-08 49.6 -3.5 68 54-128 38-107 (388)
60 PRK15386 type III secretion pr 93.8 0.17 3.7E-06 42.4 5.8 67 53-131 48-116 (426)
61 smart00370 LRR Leucine-rich re 93.5 0.065 1.4E-06 26.2 1.8 18 109-127 2-19 (26)
62 smart00369 LRR_TYP Leucine-ric 93.5 0.065 1.4E-06 26.2 1.8 18 109-127 2-19 (26)
63 KOG2123 Uncharacterized conser 93.2 0.0021 4.5E-08 50.8 -5.9 97 56-164 18-122 (388)
64 COG5238 RNA1 Ran GTPase-activa 92.9 0.091 2E-06 41.7 2.7 71 51-122 86-170 (388)
65 smart00369 LRR_TYP Leucine-ric 92.7 0.12 2.7E-06 25.2 2.1 18 85-103 2-19 (26)
66 smart00370 LRR Leucine-rich re 92.7 0.12 2.7E-06 25.2 2.1 18 85-103 2-19 (26)
67 COG5238 RNA1 Ran GTPase-activa 91.1 0.078 1.7E-06 42.1 0.4 41 81-121 88-132 (388)
68 KOG2982 Uncharacterized conser 90.9 0.16 3.4E-06 40.9 2.0 64 53-121 93-158 (418)
69 KOG1909 Ran GTPase-activating 89.8 0.11 2.4E-06 42.3 0.4 13 139-151 271-283 (382)
70 PRK15386 type III secretion pr 88.4 0.71 1.5E-05 38.8 4.1 56 81-148 48-104 (426)
71 PF13516 LRR_6: Leucine Rich r 87.8 0.11 2.5E-06 24.8 -0.5 13 110-122 3-15 (24)
72 PF13306 LRR_5: Leucine rich r 87.3 2.9 6.2E-05 28.3 6.2 83 52-148 7-91 (129)
73 PF13306 LRR_5: Leucine rich r 85.2 4.2 9E-05 27.4 6.1 84 50-147 28-112 (129)
74 smart00364 LRR_BAC Leucine-ric 83.9 0.72 1.6E-05 22.8 1.2 17 110-127 3-19 (26)
75 smart00365 LRR_SD22 Leucine-ri 81.3 1.4 3E-05 21.8 1.7 14 57-70 2-15 (26)
76 KOG2120 SCF ubiquitin ligase, 81.2 0.85 1.8E-05 36.9 1.4 63 83-149 311-374 (419)
77 smart00368 LRR_RI Leucine rich 77.2 2 4.4E-05 21.3 1.6 13 58-70 3-15 (28)
78 KOG2120 SCF ubiquitin ligase, 75.3 1.2 2.7E-05 35.9 0.7 58 55-118 311-372 (419)
79 KOG0473 Leucine-rich repeat pr 66.8 0.11 2.4E-06 40.3 -6.5 65 52-122 60-124 (326)
80 KOG3763 mRNA export factor TAP 44.2 15 0.00032 32.1 1.7 64 84-151 217-283 (585)
81 TIGR00864 PCC polycystin catio 32.0 29 0.00064 36.1 1.9 32 63-98 1-32 (2740)
82 TIGR00864 PCC polycystin catio 31.9 33 0.00071 35.8 2.2 32 91-122 1-32 (2740)
83 smart00367 LRR_CC Leucine-rich 31.3 37 0.0008 16.1 1.4 10 58-67 3-12 (26)
84 KOG3763 mRNA export factor TAP 29.1 26 0.00056 30.7 0.9 67 55-124 216-285 (585)
85 KOG1947 Leucine rich repeat pr 28.4 30 0.00064 28.8 1.2 39 82-120 240-280 (482)
86 KOG3864 Uncharacterized conser 27.0 11 0.00024 28.7 -1.5 11 109-119 151-161 (221)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=2.4e-21 Score=175.40 Aligned_cols=164 Identities=23% Similarity=0.419 Sum_probs=110.7
Q ss_pred cHHHHHHHHHHHHhC-CCCCCCCCCcCCCCCCCCCCCccccceEEcCCC----------------CCCccCCCCCCEEEC
Q 039460 2 LEQERSALIQLKHFF-NDNQRLQNWADAANDENYSNCCQWEAVEKATYE----------------CSLFTPFQQLESLDL 64 (182)
Q Consensus 2 ~~~~~~al~~~~~~~-~~~~~l~~W~~~~~~~~~~~~c~w~gv~c~~~~----------------~~~~~~l~~L~~L~L 64 (182)
+++|+.||++||+++ +|...+.+|+.. .++|.|.||+|.... +..+..+++|++|++
T Consensus 27 ~~~~~~~l~~~~~~~~~~~~~~~~w~~~------~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~L 100 (968)
T PLN00113 27 HAEELELLLSFKSSINDPLKYLSNWNSS------ADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINL 100 (968)
T ss_pred CHHHHHHHHHHHHhCCCCcccCCCCCCC------CCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEEC
Confidence 367999999999999 777788999765 689999999997421 445667888888888
Q ss_pred cCCccccccCcccccccCCCCCCcEEEccCCcCC----------------------cccchhccCCCCCCEEEccccccc
Q 039460 65 IGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFN----------------------NSIFSSLGGLSSLRCLSLRSNRLN 122 (182)
Q Consensus 65 s~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~----------------------g~~p~~~~~l~~L~~L~L~~N~l~ 122 (182)
++|.++|.+|.. .+..+++|++|++++|.++ +.+|..++.+++|++|++++|.+.
T Consensus 101 s~n~~~~~ip~~---~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 101 SNNQLSGPIPDD---IFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred CCCccCCcCChH---HhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc
Confidence 888888777763 2235555555555555544 455555666666666666666666
Q ss_pred ccccccccccCcCCCCCCCcEEecCcccCccc---ccccccC-------CCCccCcChhcccccCCC
Q 039460 123 GSVVIKVFWFDILDENGLPFLEQTANRLSLES---IDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 123 g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~~---~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
+.+|..++.++ +|++|++++|.+++.. +..+.+| |.+.+.+|.+++++++|+
T Consensus 178 ~~~p~~~~~l~-----~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 239 (968)
T PLN00113 178 GKIPNSLTNLT-----SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239 (968)
T ss_pred ccCChhhhhCc-----CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCC
Confidence 66666666555 6677777777666442 3333333 455666777777666664
No 2
>PLN03150 hypothetical protein; Provisional
Probab=99.73 E-value=1.2e-17 Score=145.02 Aligned_cols=140 Identities=26% Similarity=0.288 Sum_probs=104.6
Q ss_pred cHHHHHHHHHHHHhC-CCCCCCCCCcCCCCCCCCCCCccccceEEcCCCCCCccCCCCCCEEECcCCccccccCcccccc
Q 039460 2 LEQERSALIQLKHFF-NDNQRLQNWADAANDENYSNCCQWEAVEKATYECSLFTPFQQLESLDLIGNNIVGCVENEGLGR 80 (182)
Q Consensus 2 ~~~~~~al~~~~~~~-~~~~~l~~W~~~~~~~~~~~~c~w~gv~c~~~~~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~ 80 (182)
.+.|+.||+.+|+++ .+. ..+|.++ +|....|.|.||.|.... ......++.|+|++|.+.|.+|. .
T Consensus 370 ~~~~~~aL~~~k~~~~~~~--~~~W~g~---~C~p~~~~w~Gv~C~~~~---~~~~~~v~~L~L~~n~L~g~ip~----~ 437 (623)
T PLN03150 370 LLEEVSALQTLKSSLGLPL--RFGWNGD---PCVPQQHPWSGADCQFDS---TKGKWFIDGLGLDNQGLRGFIPN----D 437 (623)
T ss_pred CchHHHHHHHHHHhcCCcc--cCCCCCC---CCCCcccccccceeeccC---CCCceEEEEEECCCCCccccCCH----H
Confidence 457899999999998 432 2479763 111112379999996321 01112467788888888888887 5
Q ss_pred cCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCccccccc
Q 039460 81 LSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCI 158 (182)
Q Consensus 81 ~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~~~~~l 158 (182)
+..+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|..++.++ +|++|++++|.++|..+..+
T Consensus 438 i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~-----~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 438 ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT-----SLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC-----CCCEEECcCCcccccCChHH
Confidence 88888888888888888888888888888888888888888888888888887 88888888888887654433
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.48 E-value=5e-14 Score=127.97 Aligned_cols=92 Identities=33% Similarity=0.461 Sum_probs=49.5
Q ss_pred CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460 51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF 130 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~ 130 (182)
..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+++.+|..++
T Consensus 158 ~~~~~l~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~ 233 (968)
T PLN00113 158 NDIGSFSSLKVLDLGGNVLVGKIPN----SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG 233 (968)
T ss_pred hHHhcCCCCCEEECccCcccccCCh----hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh
Confidence 3444555555555555555555554 355555555555555555555555555555555555555555555555555
Q ss_pred ccCcCCCCCCCcEEecCcccC
Q 039460 131 WFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 131 ~l~~l~~~~L~~l~l~~N~~~ 151 (182)
.++ +|++|++++|.++
T Consensus 234 ~l~-----~L~~L~L~~n~l~ 249 (968)
T PLN00113 234 GLT-----SLNHLDLVYNNLT 249 (968)
T ss_pred cCC-----CCCEEECcCceec
Confidence 444 4555555555544
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.33 E-value=3.1e-14 Score=103.56 Aligned_cols=119 Identities=25% Similarity=0.354 Sum_probs=86.5
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc-ccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG-SVVIK 128 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~ 128 (182)
|+.+..+.+|++|++++|+++ .+|. .++.+++|+.|+++-|++. .+|..|+.++-|++|||.+|++.. .+|..
T Consensus 49 ppnia~l~nlevln~~nnqie-~lp~----~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgn 122 (264)
T KOG0617|consen 49 PPNIAELKNLEVLNLSNNQIE-ELPT----SISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGN 122 (264)
T ss_pred CCcHHHhhhhhhhhcccchhh-hcCh----hhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcc
Confidence 677888888999999999987 4776 5888899999999888887 788889999999999998888863 56777
Q ss_pred ccccCcCCCCCCCcEEecCcccC--cccccccccCC-------CCccCcChhcccccCCCC
Q 039460 129 VFWFDILDENGLPFLEQTANRLS--LESIDCIQDLI-------YLGGNLPRKTLQQTKISE 180 (182)
Q Consensus 129 ~~~l~~l~~~~L~~l~l~~N~~~--~~~~~~l~~L~-------~l~g~ip~~l~~l~~L~~ 180 (182)
|+.+. .|+.+++++|.|. +..++.+++|. .+- ++|.+++.+++|+|
T Consensus 123 ff~m~-----tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lre 177 (264)
T KOG0617|consen 123 FFYMT-----TLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRE 177 (264)
T ss_pred hhHHH-----HHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHH
Confidence 77776 6666777777666 33445555541 221 25666665555543
No 5
>PLN03150 hypothetical protein; Provisional
Probab=99.25 E-value=1.1e-11 Score=107.98 Aligned_cols=94 Identities=34% Similarity=0.393 Sum_probs=84.1
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
|..+..+++|+.|+|++|.+.|.+|. .+..+++|+.|+|++|.++|.+|..++.+++|++|+|++|+++|.+|..+
T Consensus 435 p~~i~~L~~L~~L~Ls~N~l~g~iP~----~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNSIRGNIPP----SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred CHHHhCCCCCCEEECCCCcccCcCCh----HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence 66788999999999999999999998 69999999999999999999999999999999999999999999999988
Q ss_pred cccCcCCCCCCCcEEecCcccC
Q 039460 130 FWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
+.+. .++..+++.+|...
T Consensus 511 ~~~~----~~~~~l~~~~N~~l 528 (623)
T PLN03150 511 GGRL----LHRASFNFTDNAGL 528 (623)
T ss_pred hhcc----ccCceEEecCCccc
Confidence 7542 15677888887643
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.18 E-value=2.3e-12 Score=93.91 Aligned_cols=115 Identities=25% Similarity=0.284 Sum_probs=94.3
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
.+..+.+++.|.||+|.++- +|+ .+..+.+|+.|++.+|++. .+|.++..++.|+.|+++.|++. .+|..|+.
T Consensus 28 gLf~~s~ITrLtLSHNKl~~-vpp----nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs 100 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTV-VPP----NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGS 100 (264)
T ss_pred cccchhhhhhhhcccCceee-cCC----cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCC
Confidence 34456788999999999985 666 6999999999999999998 89999999999999999999997 89999999
Q ss_pred cCcCCCCCCCcEEecCcccCcc----cccccccC-------CCCccCcChhcccccCCC
Q 039460 132 FDILDENGLPFLEQTANRLSLE----SIDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
++ .|+++++..|++... .|-.|..| |.+. .+|++++++++|.
T Consensus 101 ~p-----~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lq 153 (264)
T KOG0617|consen 101 FP-----ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQ 153 (264)
T ss_pred Cc-----hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhccee
Confidence 99 788888888877733 12223333 3333 4899999998875
No 7
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=99.05 E-value=2.9e-10 Score=64.57 Aligned_cols=41 Identities=29% Similarity=0.567 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHHhC-C-CCCCCCCCcCCCCCCCCCCCccccceEEc
Q 039460 2 LEQERSALIQLKHFF-N-DNQRLQNWADAANDENYSNCCQWEAVEKA 46 (182)
Q Consensus 2 ~~~~~~al~~~~~~~-~-~~~~l~~W~~~~~~~~~~~~c~w~gv~c~ 46 (182)
.++|++||++||+++ + +...+.+|+... ..+||.|.||+|+
T Consensus 1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~----~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSS----DSDPCSWSGVTCD 43 (43)
T ss_dssp -HHHHHHHHHHHHCTT-SC-CCCTT--TT------S-CCCSTTEEE-
T ss_pred CcHHHHHHHHHHHhcccccCcccccCCCcC----CCCCeeeccEEeC
Confidence 368999999999999 3 557899999851 2589999999995
No 8
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=9.8e-10 Score=67.08 Aligned_cols=61 Identities=34% Similarity=0.483 Sum_probs=43.8
Q ss_pred CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccc
Q 039460 57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRL 121 (182)
Q Consensus 57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l 121 (182)
++|++|++++|+++. +|.. .|..+++|++|++++|.+....|..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~-i~~~---~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE-IPPD---SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE-ECTT---TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc-cCHH---HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 467778888887774 5542 577778888888888877755455777777888888777764
No 9
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.86 E-value=2.1e-09 Score=65.56 Aligned_cols=61 Identities=26% Similarity=0.286 Sum_probs=53.0
Q ss_pred CCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCccc
Q 039460 85 SNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRL 150 (182)
Q Consensus 85 ~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~ 150 (182)
++|++|++++|+++...+..|..+++|++|++++|.++...|..+..++ +|+++++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~-----~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLP-----NLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTST-----TESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCC-----CCCEEeCcCCcC
Confidence 4689999999999944446889999999999999999966667888888 999999999975
No 10
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.84 E-value=3.1e-09 Score=78.44 Aligned_cols=102 Identities=29% Similarity=0.333 Sum_probs=47.6
Q ss_pred Ccc-CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhc-cCCCCCCEEEccccccccccc--c
Q 039460 52 LFT-PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSL-GGLSSLRCLSLRSNRLNGSVV--I 127 (182)
Q Consensus 52 ~~~-~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~-~~l~~L~~L~L~~N~l~g~~p--~ 127 (182)
.++ .+.+|+.|++++|.++. ++ .+..++.|++|++++|+++ .+.+.+ ..+++|+.|++++|++.. +- .
T Consensus 36 ~L~~~l~~L~~L~Ls~N~I~~-l~-----~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~-l~~l~ 107 (175)
T PF14580_consen 36 NLGATLDKLEVLDLSNNQITK-LE-----GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISD-LNELE 107 (175)
T ss_dssp S--TT-TT--EEE-TTS--S---T-----T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---S-CCCCG
T ss_pred chhhhhcCCCEEECCCCCCcc-cc-----CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCC-hHHhH
Confidence 344 46789999999999985 55 3888999999999999998 565544 468999999999999973 21 2
Q ss_pred cccccCcCCCCCCCcEEecCcccCcc------cccccccCCCCcc
Q 039460 128 KVFWFDILDENGLPFLEQTANRLSLE------SIDCIQDLIYLGG 166 (182)
Q Consensus 128 ~~~~l~~l~~~~L~~l~l~~N~~~~~------~~~~l~~L~~l~g 166 (182)
.+..++ +|++|++.+|.++.. ++..+++|..|.|
T Consensus 108 ~L~~l~-----~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 108 PLSSLP-----KLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp GGGG-T-----T--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred HHHcCC-----CcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 334444 899999999999843 5677777765554
No 11
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.83 E-value=5e-10 Score=95.56 Aligned_cols=119 Identities=23% Similarity=0.246 Sum_probs=90.8
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch-hccCCCCCCEEEccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS-SLGGLSSLRCLSLRSNRLNGSVVIK 128 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~L~~N~l~g~~p~~ 128 (182)
|..+..+..|+.||||+|++. ..|. .+-.-.++-+|+|++|++. .||. -|.++..|-+|||++|++. .+|+.
T Consensus 96 P~diF~l~dLt~lDLShNqL~-EvP~----~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ 168 (1255)
T KOG0444|consen 96 PTDIFRLKDLTILDLSHNQLR-EVPT----NLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQ 168 (1255)
T ss_pred Cchhcccccceeeecchhhhh-hcch----hhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHH
Confidence 778888999999999999998 5787 5888889999999999998 7776 4568999999999999998 89999
Q ss_pred ccccCcCCCCCCCcEEecCcccCcc---cccccccCCCC--------ccCcChhcccccCCCC
Q 039460 129 VFWFDILDENGLPFLEQTANRLSLE---SIDCIQDLIYL--------GGNLPRKTLQQTKISE 180 (182)
Q Consensus 129 ~~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L~~l--------~g~ip~~l~~l~~L~~ 180 (182)
+..+. .|++|.+++|.+..- .+..|++|..| ...||.++-.+.+|.+
T Consensus 169 ~RRL~-----~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~d 226 (1255)
T KOG0444|consen 169 IRRLS-----MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRD 226 (1255)
T ss_pred HHHHh-----hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhh
Confidence 98888 888899988877633 23333333111 1236766655555543
No 12
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.81 E-value=2.1e-10 Score=97.76 Aligned_cols=118 Identities=24% Similarity=0.242 Sum_probs=74.2
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
|..+..+.+|..+|+|.|.+. .+|. .+-.+.+|+.|+|++|.++ .+....+...+|++|+++.|+++ .+|+.+
T Consensus 215 Ptsld~l~NL~dvDlS~N~Lp-~vPe----cly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~av 287 (1255)
T KOG0444|consen 215 PTSLDDLHNLRDVDLSENNLP-IVPE----CLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAV 287 (1255)
T ss_pred CCchhhhhhhhhccccccCCC-cchH----HHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHH
Confidence 566666777777777777775 3555 4666777777777777776 55555566667777777777776 677777
Q ss_pred cccCcCCCCCCCcEEecCcccC----cccccccccC------CCCccCcChhcccccCCC
Q 039460 130 FWFDILDENGLPFLEQTANRLS----LESIDCIQDL------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~----~~~~~~l~~L------~~l~g~ip~~l~~l~~L~ 179 (182)
..++ .|+-|.+.+|+++ +.-++.+.+| ++.-.-+|++++++.+|+
T Consensus 288 cKL~-----kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 288 CKLT-----KLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQ 342 (1255)
T ss_pred hhhH-----HHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHH
Confidence 7766 6666777777666 2234444444 111223666666665554
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.69 E-value=2.4e-09 Score=90.59 Aligned_cols=79 Identities=24% Similarity=0.268 Sum_probs=54.1
Q ss_pred CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460 51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF 130 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~ 130 (182)
..|-.+..+++|+|..|+++..- . +++.++++|+.|++++|.+...-++.+...++|++|+|++|+++.--+..+.
T Consensus 263 G~Fy~l~kme~l~L~~N~l~~vn-~---g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~ 338 (873)
T KOG4194|consen 263 GAFYGLEKMEHLNLETNRLQAVN-E---GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFR 338 (873)
T ss_pred cceeeecccceeecccchhhhhh-c---ccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHH
Confidence 34556677788888888877432 2 2577778888888888887766677777778888888888888743334444
Q ss_pred ccC
Q 039460 131 WFD 133 (182)
Q Consensus 131 ~l~ 133 (182)
.+.
T Consensus 339 ~L~ 341 (873)
T KOG4194|consen 339 VLS 341 (873)
T ss_pred HHH
Confidence 444
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.68 E-value=1.8e-09 Score=91.41 Aligned_cols=92 Identities=27% Similarity=0.177 Sum_probs=59.7
Q ss_pred CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460 51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF 130 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~ 130 (182)
.-+..|+.|+.|++|+|.|+-.-+. .+...++|++|+|++|+++..-+..|..+..|+.|.|++|.+...--..|.
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d----~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~ 362 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHID----SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV 362 (873)
T ss_pred ccccccchhhhhccchhhhheeecc----hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence 3455677788888888887754333 466677788888888887744455666666777777777776643334444
Q ss_pred ccCcCCCCCCCcEEecCcccC
Q 039460 131 WFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 131 ~l~~l~~~~L~~l~l~~N~~~ 151 (182)
.++ +|+.|++.+|.++
T Consensus 363 ~ls-----sL~~LdLr~N~ls 378 (873)
T KOG4194|consen 363 GLS-----SLHKLDLRSNELS 378 (873)
T ss_pred Hhh-----hhhhhcCcCCeEE
Confidence 445 5666666666655
No 15
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.68 E-value=8.4e-09 Score=83.97 Aligned_cols=90 Identities=26% Similarity=0.315 Sum_probs=73.6
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccc-----------------------h-hc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF-----------------------S-SL 105 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p-----------------------~-~~ 105 (182)
|..+..+++|+.|+|++|-+. .+|. .+..+..|+.|+++.|+|. .+| + .+
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~----e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l 501 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLN-DLPE----EMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGL 501 (565)
T ss_pred hHHHHhhhcceeeecccchhh-hcch----hhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHh
Confidence 556778899999999998887 4887 5888888999999998886 444 2 26
Q ss_pred cCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460 106 GGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 106 ~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
..|.+|..|||.+|.+. .+|+.++.+. +|+++++.+|.|+
T Consensus 502 ~nm~nL~tLDL~nNdlq-~IPp~Lgnmt-----nL~hLeL~gNpfr 541 (565)
T KOG0472|consen 502 KNMRNLTTLDLQNNDLQ-QIPPILGNMT-----NLRHLELDGNPFR 541 (565)
T ss_pred hhhhhcceeccCCCchh-hCChhhcccc-----ceeEEEecCCccC
Confidence 67788888888888887 7888888888 8888888888888
No 16
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=2.5e-08 Score=73.57 Aligned_cols=95 Identities=28% Similarity=0.396 Sum_probs=31.5
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccC-CCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc-c
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLS-RLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV-F 130 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~-~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~-~ 130 (182)
+.+..++++|+|++|.|+- +. .+. .+.+|+.|++++|.++ .++ .+..++.|++|++++|.++ .+.+.+ .
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-Ie-----~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~ 85 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-IE-----NLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDK 85 (175)
T ss_dssp ---------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHH
T ss_pred ccccccccccccccccccc-cc-----chhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHH
Confidence 3445578999999999984 44 365 5889999999999998 554 4778999999999999998 555444 3
Q ss_pred ccCcCCCCCCCcEEecCcccCcc----cccccccC
Q 039460 131 WFDILDENGLPFLEQTANRLSLE----SIDCIQDL 161 (182)
Q Consensus 131 ~l~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L 161 (182)
.++ +|+.|++++|++..- .+..+++|
T Consensus 86 ~lp-----~L~~L~L~~N~I~~l~~l~~L~~l~~L 115 (175)
T PF14580_consen 86 NLP-----NLQELYLSNNKISDLNELEPLSSLPKL 115 (175)
T ss_dssp H-T-----T--EEE-TTS---SCCCCGGGGG-TT-
T ss_pred hCC-----cCCEEECcCCcCCChHHhHHHHcCCCc
Confidence 467 899999999999832 34444544
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.53 E-value=7.3e-09 Score=91.33 Aligned_cols=90 Identities=26% Similarity=0.349 Sum_probs=67.3
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
.+.+..+++|++|+|++|++. .+|.. .+.++..|+.|+|++|+++ .+|..+..++.|++|...+|++. .+| .+
T Consensus 376 ~p~l~~~~hLKVLhLsyNrL~-~fpas---~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~ 448 (1081)
T KOG0618|consen 376 FPVLVNFKHLKVLHLSYNRLN-SFPAS---KLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-EL 448 (1081)
T ss_pred hhhhccccceeeeeecccccc-cCCHH---HHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hh
Confidence 445677889999999999997 58874 6788899999999999998 78887777777777777777776 566 55
Q ss_pred cccCcCCCCCCCcEEecCcccC
Q 039460 130 FWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
..++ .|+++|++.|.++
T Consensus 449 ~~l~-----qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 449 AQLP-----QLKVLDLSCNNLS 465 (1081)
T ss_pred hhcC-----cceEEecccchhh
Confidence 5555 5555555555555
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.52 E-value=6.3e-09 Score=84.66 Aligned_cols=91 Identities=26% Similarity=0.229 Sum_probs=60.7
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhcc-CCCCCCEEEccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLG-GLSSLRCLSLRSNRLNGSVVIK 128 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~-~l~~L~~L~L~~N~l~g~~p~~ 128 (182)
|+.++.+.+|..||+..|.+. .+|. |..++.|++|.++.|++. .+|.+.. ++.++.+|||..|++. ++|..
T Consensus 199 P~~lg~l~~L~~LyL~~Nki~-~lPe-----f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde 270 (565)
T KOG0472|consen 199 PPELGGLESLELLYLRRNKIR-FLPE-----FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDE 270 (565)
T ss_pred ChhhcchhhhHHHHhhhcccc-cCCC-----CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchH
Confidence 566666666666666666665 2553 666666666666666665 5666554 6777777777777776 67777
Q ss_pred ccccCcCCCCCCCcEEecCcccCcc
Q 039460 129 VFWFDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 129 ~~~l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
+.-+. +|+++|+++|.+++-
T Consensus 271 ~clLr-----sL~rLDlSNN~is~L 290 (565)
T KOG0472|consen 271 ICLLR-----SLERLDLSNNDISSL 290 (565)
T ss_pred HHHhh-----hhhhhcccCCccccC
Confidence 77666 677777777777743
No 19
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.36 E-value=2.1e-06 Score=80.06 Aligned_cols=86 Identities=21% Similarity=0.159 Sum_probs=52.1
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF 132 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 132 (182)
+..+++|+.|+|+++...+.+|. +..+++|+.|+|++|.....+|..++.+++|+.|+++++.....+|..+ .+
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~-----ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPD-----LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCc-----cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 44566666666666554445553 5666677777776665545667777777777777777654444666544 33
Q ss_pred CcCCCCCCCcEEecCcc
Q 039460 133 DILDENGLPFLEQTANR 149 (182)
Q Consensus 133 ~~l~~~~L~~l~l~~N~ 149 (182)
+ +|+.|++++|.
T Consensus 704 ~-----sL~~L~Lsgc~ 715 (1153)
T PLN03210 704 K-----SLYRLNLSGCS 715 (1153)
T ss_pred C-----CCCEEeCCCCC
Confidence 3 55666665553
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.35 E-value=1.4e-07 Score=76.63 Aligned_cols=91 Identities=23% Similarity=0.235 Sum_probs=78.0
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
.|..|++|+.|+|++|.+++.-+. .|..+..++.|.|..|++...--..|..+.+|+.|+|.+|+++-..|..|..
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~----aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~ 344 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDG----AFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQT 344 (498)
T ss_pred HHhhcccceEeccCCCccchhhhh----hhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccc
Confidence 466799999999999999986554 7999999999999999997444457889999999999999999888888877
Q ss_pred cCcCCCCCCCcEEecCcccC
Q 039460 132 FDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~ 151 (182)
+. +|..+++.+|.+.
T Consensus 345 ~~-----~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 345 LF-----SLSTLNLLSNPFN 359 (498)
T ss_pred cc-----eeeeeehccCccc
Confidence 77 8888888888776
No 21
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.35 E-value=6.4e-07 Score=50.94 Aligned_cols=36 Identities=31% Similarity=0.427 Sum_probs=21.9
Q ss_pred CCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460 86 NLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN 122 (182)
Q Consensus 86 ~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~ 122 (182)
+|++|++++|+++ .+|+.+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4666666666666 55655666666666666666665
No 22
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.34 E-value=1.4e-06 Score=77.58 Aligned_cols=17 Identities=18% Similarity=0.243 Sum_probs=9.6
Q ss_pred CCCccCcChhcccccCCC
Q 039460 162 IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 162 ~~l~g~ip~~l~~l~~L~ 179 (182)
|.++ .||.+++++++|.
T Consensus 432 NqLt-~LP~sl~~L~~L~ 448 (788)
T PRK15387 432 NQLT-RLPESLIHLSSET 448 (788)
T ss_pred Cccc-ccChHHhhccCCC
Confidence 3444 4676666666553
No 23
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.33 E-value=6e-06 Score=73.57 Aligned_cols=55 Identities=27% Similarity=0.383 Sum_probs=29.3
Q ss_pred CCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460 58 QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN 122 (182)
Q Consensus 58 ~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~ 122 (182)
+++.|++++|.++. +|. .+. .+|++|++++|.++ .+|..+. ..|+.|+|++|++.
T Consensus 200 ~L~~L~Ls~N~Lts-LP~----~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 200 QITTLILDNNELKS-LPE----NLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred CCcEEEecCCCCCc-CCh----hhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence 56777777777763 554 222 35666666666665 4454332 23444444444443
No 24
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.23 E-value=8.7e-07 Score=78.83 Aligned_cols=65 Identities=22% Similarity=0.225 Sum_probs=36.8
Q ss_pred CCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCccccccccc
Q 039460 86 NLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLESIDCIQD 160 (182)
Q Consensus 86 ~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~~~~~l~~ 160 (182)
+|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..++.+. +|+.+++++|++++..+..+..
T Consensus 403 ~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~-----~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 403 ELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLS-----SETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhcc-----CCCeEECCCCCCCchHHHHHHH
Confidence 3444444444444 23332 123455556666655 5666666655 7788888888888775554433
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.22 E-value=5.5e-08 Score=82.15 Aligned_cols=89 Identities=25% Similarity=0.319 Sum_probs=68.6
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
|..+..+..|+++||+.|+++ .+|. .++.|+ |+.|-+++|+++ .+|..++.++.|..||.+.|.+. .+|..+
T Consensus 114 p~~i~~L~~lt~l~ls~NqlS-~lp~----~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql 185 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQLS-HLPD----GLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQL 185 (722)
T ss_pred chhhhhhhHHHHhhhccchhh-cCCh----hhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHh
Confidence 667788888999999999988 4666 466666 888888888887 78888888888888888888887 788888
Q ss_pred cccCcCCCCCCCcEEecCcccC
Q 039460 130 FWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
+.+. +|+.+.+..|.+.
T Consensus 186 ~~l~-----slr~l~vrRn~l~ 202 (722)
T KOG0532|consen 186 GYLT-----SLRDLNVRRNHLE 202 (722)
T ss_pred hhHH-----HHHHHHHhhhhhh
Confidence 7777 5555555555443
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.16 E-value=6.1e-06 Score=77.02 Aligned_cols=59 Identities=19% Similarity=0.181 Sum_probs=30.3
Q ss_pred CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccc
Q 039460 57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNR 120 (182)
Q Consensus 57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~ 120 (182)
+.|+.|++++|...+.+|. .+..+++|+.|++++|..-+.+|..+ .+++|+.|+++++.
T Consensus 778 ~sL~~L~Ls~n~~l~~lP~----si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~ 836 (1153)
T PLN03210 778 PSLTRLFLSDIPSLVELPS----SIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS 836 (1153)
T ss_pred ccchheeCCCCCCccccCh----hhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence 3455555555555555554 35555666666665544333455443 34555555555443
No 27
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.10 E-value=4.7e-07 Score=73.73 Aligned_cols=97 Identities=21% Similarity=0.181 Sum_probs=71.3
Q ss_pred eEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccc
Q 039460 43 VEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRS 118 (182)
Q Consensus 43 v~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~ 118 (182)
|.|...+ |..+. ...++++|..|+|+ .+|+. .|+.+++|+.|||+.|.++..-|+.|..+++|..|-+.+
T Consensus 51 VdCr~~GL~eVP~~LP--~~tveirLdqN~I~-~iP~~---aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP--PETVEIRLDQNQIS-SIPPG---AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred EEccCCCcccCcccCC--CcceEEEeccCCcc-cCChh---hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhc
Confidence 7787654 33332 35778899999998 47773 899999999999999999977788999999888776665
Q ss_pred -ccccccccc-cccccCcCCCCCCCcEEecCcccC
Q 039460 119 -NRLNGSVVI-KVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 119 -N~l~g~~p~-~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
|+++ .+|+ .|+.+. +++-|.+..|.+.
T Consensus 125 ~NkI~-~l~k~~F~gL~-----slqrLllNan~i~ 153 (498)
T KOG4237|consen 125 NNKIT-DLPKGAFGGLS-----SLQRLLLNANHIN 153 (498)
T ss_pred CCchh-hhhhhHhhhHH-----HHHHHhcChhhhc
Confidence 8888 5664 455555 5555555555554
No 28
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.10 E-value=1.3e-06 Score=78.85 Aligned_cols=86 Identities=24% Similarity=0.328 Sum_probs=60.0
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF 132 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 132 (182)
|..++.|++|||++|.--+.+|. .++.|-+|++|++++..++ .+|..+++++.|.+|++..+.....+|.....+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~----~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L 641 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPS----SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLEL 641 (889)
T ss_pred HhhCcceEEEECCCCCccCcCCh----HHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhc
Confidence 55577777777777766666776 5777777777777777776 777777777777777777666554555555545
Q ss_pred CcCCCCCCCcEEecCc
Q 039460 133 DILDENGLPFLEQTAN 148 (182)
Q Consensus 133 ~~l~~~~L~~l~l~~N 148 (182)
. +|+++.+...
T Consensus 642 ~-----~Lr~L~l~~s 652 (889)
T KOG4658|consen 642 Q-----SLRVLRLPRS 652 (889)
T ss_pred c-----cccEEEeecc
Confidence 5 7777776544
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.08 E-value=1.6e-06 Score=69.21 Aligned_cols=90 Identities=24% Similarity=0.226 Sum_probs=40.2
Q ss_pred CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcc----cchhccCCCCCCEEEcccccccccc----ccc
Q 039460 57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLRSNRLNGSV----VIK 128 (182)
Q Consensus 57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~~----p~~ 128 (182)
++|++|++++|.+++.....+...+..+.+|++|++++|.+++. ++..+..+++|++|++++|.+++.. +..
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 216 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAET 216 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHH
Confidence 45555555555555221110001233444555555555555421 2223334445555555555554221 122
Q ss_pred ccccCcCCCCCCCcEEecCcccC
Q 039460 129 VFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 129 ~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
+..++ +|++|++++|.++
T Consensus 217 ~~~~~-----~L~~L~ls~n~l~ 234 (319)
T cd00116 217 LASLK-----SLEVLNLGDNNLT 234 (319)
T ss_pred hcccC-----CCCEEecCCCcCc
Confidence 22233 5566666666555
No 30
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.04 E-value=1.2e-05 Score=71.59 Aligned_cols=77 Identities=18% Similarity=0.296 Sum_probs=52.9
Q ss_pred CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCC
Q 039460 57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILD 136 (182)
Q Consensus 57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~ 136 (182)
++|++|++++|.++ .+|. .+ ..+|+.|+|++|.+. .+|..+. .+|+.|++++|+++ .+|..+. .
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~----~l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~--- 283 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPA----TL--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--E--- 283 (754)
T ss_pred cCCCEEECCCCccc-cCCh----hh--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--C---
Confidence 47899999999988 4665 23 246778888888776 6676654 46777788777776 5666442 2
Q ss_pred CCCCCcEEecCcccC
Q 039460 137 ENGLPFLEQTANRLS 151 (182)
Q Consensus 137 ~~~L~~l~l~~N~~~ 151 (182)
+|++|++++|+++
T Consensus 284 --sL~~L~Ls~N~Lt 296 (754)
T PRK15370 284 --ELRYLSVYDNSIR 296 (754)
T ss_pred --CCcEEECCCCccc
Confidence 5666666666665
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.03 E-value=1.4e-06 Score=69.01 Aligned_cols=59 Identities=32% Similarity=0.445 Sum_probs=45.0
Q ss_pred CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460 57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN 122 (182)
Q Consensus 57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~ 122 (182)
+.|+++|||+|.|+ .+.. +..-++.++.|++++|.+. .+ +.+..+++|+.|||++|.++
T Consensus 284 q~LtelDLS~N~I~-~iDE----SvKL~Pkir~L~lS~N~i~-~v-~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDE----SVKLAPKLRRLILSQNRIR-TV-QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred hhhhhccccccchh-hhhh----hhhhccceeEEecccccee-ee-hhhhhcccceEeecccchhH
Confidence 45788888888887 4555 4677788888888888886 33 33778888888888888886
No 32
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.01 E-value=9.6e-07 Score=78.34 Aligned_cols=82 Identities=32% Similarity=0.441 Sum_probs=63.5
Q ss_pred CCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCC
Q 039460 58 QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDE 137 (182)
Q Consensus 58 ~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~ 137 (182)
+|+.||+++|.+. .+|. .++.+.+|+.|+++.|.+. .+|....++.+|+++.|..|++. .+|..+..++
T Consensus 46 ~L~~l~lsnn~~~-~fp~----~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lk---- 114 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPI----QITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELK---- 114 (1081)
T ss_pred eeEEeeccccccc-cCCc----hhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhh----
Confidence 4788888888875 4666 4777788888888888776 67777778888888888888776 7788777777
Q ss_pred CCCCcEEecCcccC
Q 039460 138 NGLPFLEQTANRLS 151 (182)
Q Consensus 138 ~~L~~l~l~~N~~~ 151 (182)
+|++|+++.|.|.
T Consensus 115 -nl~~LdlS~N~f~ 127 (1081)
T KOG0618|consen 115 -NLQYLDLSFNHFG 127 (1081)
T ss_pred -cccccccchhccC
Confidence 7778888887776
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.98 E-value=6.6e-07 Score=75.81 Aligned_cols=89 Identities=21% Similarity=0.260 Sum_probs=74.9
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
|..++.+.+|..||.+.|.+.. +|. .++.+.+|+.|.+.+|++. .+|+.+..|+ |..||++.|+++ .||..|
T Consensus 159 p~~ig~~~tl~~ld~s~nei~s-lps----ql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~f 230 (722)
T KOG0532|consen 159 PEEIGLLPTLAHLDVSKNEIQS-LPS----QLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDF 230 (722)
T ss_pred CcccccchhHHHhhhhhhhhhh-chH----HhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhh
Confidence 6677777888888999988874 666 4888888999999888887 7888887665 888999999998 899999
Q ss_pred cccCcCCCCCCCcEEecCcccC
Q 039460 130 FWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
..|. .|++|.|.+|.+.
T Consensus 231 r~m~-----~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 231 RKMR-----HLQVLQLENNPLQ 247 (722)
T ss_pred hhhh-----hheeeeeccCCCC
Confidence 8888 8999999999888
No 34
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=7.7e-06 Score=46.42 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=32.2
Q ss_pred CCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460 109 SSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 109 ~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
++|++|++++|+++ .+|+.+..++ +|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~-----~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLP-----NLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCT-----TSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCC-----CCCEEEecCCCCC
Confidence 47999999999999 7888889988 9999999999988
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.92 E-value=3.1e-06 Score=67.11 Aligned_cols=85 Identities=22% Similarity=0.250 Sum_probs=62.8
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF 132 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 132 (182)
+.-++.+++|++|+|.+.. +- ++..+.+|+.|||++|.++ .+..+-..+-+++.|.|++|.+. --..++.+
T Consensus 303 vKL~Pkir~L~lS~N~i~~-v~-----nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE--~LSGL~KL 373 (490)
T KOG1259|consen 303 VKLAPKLRRLILSQNRIRT-VQ-----NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE--TLSGLRKL 373 (490)
T ss_pred hhhccceeEEeccccceee-eh-----hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh--hhhhhHhh
Confidence 4446889999999999973 33 4888999999999999987 56555556777788888888775 12334555
Q ss_pred CcCCCCCCCcEEecCcccC
Q 039460 133 DILDENGLPFLEQTANRLS 151 (182)
Q Consensus 133 ~~l~~~~L~~l~l~~N~~~ 151 (182)
- +|.+|++.+|++.
T Consensus 374 Y-----SLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 374 Y-----SLVNLDLSSNQIE 387 (490)
T ss_pred h-----hheeccccccchh
Confidence 5 6777777777776
No 36
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.87 E-value=3.7e-06 Score=67.03 Aligned_cols=62 Identities=21% Similarity=0.216 Sum_probs=29.0
Q ss_pred CCCcEEEccCCcCCcc----cchhccCCCCCCEEEccccccccc----ccccccccCcCCCCCCCcEEecCcccC
Q 039460 85 SNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLRSNRLNGS----VVIKVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 85 ~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~----~p~~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
++|+.|++++|.+++. ++..+..++.|+.|++++|.+++. ++..+...+ +|+++++++|.++
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~-----~L~~L~L~~n~i~ 206 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANC-----NLEVLDLNNNGLT 206 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCC-----CCCEEeccCCccC
Confidence 4555555555555421 222333444555555555555421 122222222 5666666666655
No 37
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.75 E-value=2.2e-06 Score=60.60 Aligned_cols=87 Identities=21% Similarity=0.268 Sum_probs=69.7
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccC-CCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLS-RLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~-~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
+....+|+.++|++|.+.. +|+ .|. .++.++.|+++.|.++ .+|..+..++.|+.|++..|.+. ..|..+..
T Consensus 49 l~~~~el~~i~ls~N~fk~-fp~----kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~ 121 (177)
T KOG4579|consen 49 LSKGYELTKISLSDNGFKK-FPK----KFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAP 121 (177)
T ss_pred HhCCceEEEEecccchhhh-CCH----HHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHH
Confidence 3445678888999999984 676 354 4567889999999998 89999999999999999999997 78888877
Q ss_pred cCcCCCCCCCcEEecCcccC
Q 039460 132 FDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~ 151 (182)
+. ++.+|+..+|...
T Consensus 122 L~-----~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 122 LI-----KLDMLDSPENARA 136 (177)
T ss_pred HH-----hHHHhcCCCCccc
Confidence 77 6777777776655
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.69 E-value=2.2e-05 Score=64.82 Aligned_cols=83 Identities=34% Similarity=0.377 Sum_probs=39.1
Q ss_pred CCCCEEECcCCccccccCcccccccCCCC-CCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460 57 QQLESLDLIGNNIVGCVENEGLGRLSRLS-NLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL 135 (182)
Q Consensus 57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~-~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l 135 (182)
+.++.|++.+|.++- +|. ....+. +|+.|++++|.+. .+|..+..+++|+.|++++|+++ .+|...+...
T Consensus 116 ~~l~~L~l~~n~i~~-i~~----~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~-- 186 (394)
T COG4886 116 TNLTSLDLDNNNITD-IPP----LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLS-- 186 (394)
T ss_pred cceeEEecCCccccc-Ccc----ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhh--
Confidence 445555555555542 333 133332 5555555555554 44444555555555555555554 4444332333
Q ss_pred CCCCCCcEEecCcccC
Q 039460 136 DENGLPFLEQTANRLS 151 (182)
Q Consensus 136 ~~~~L~~l~l~~N~~~ 151 (182)
.|+.+++++|+++
T Consensus 187 ---~L~~L~ls~N~i~ 199 (394)
T COG4886 187 ---NLNNLDLSGNKIS 199 (394)
T ss_pred ---hhhheeccCCccc
Confidence 3444444444444
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.60 E-value=2e-05 Score=65.14 Aligned_cols=87 Identities=30% Similarity=0.414 Sum_probs=70.1
Q ss_pred CCCccCCC-CCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccc
Q 039460 50 CSLFTPFQ-QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK 128 (182)
Q Consensus 50 ~~~~~~l~-~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~ 128 (182)
++....+. +|+.|+++.|.+.- +|. .+..++.|+.|+++.|.+. .+|...+..+.|+.|++++|+++ .+|..
T Consensus 132 ~~~~~~~~~nL~~L~l~~N~i~~-l~~----~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~ 204 (394)
T COG4886 132 PPLIGLLKSNLKELDLSDNKIES-LPS----PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPE 204 (394)
T ss_pred ccccccchhhcccccccccchhh-hhh----hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchh
Confidence 44455564 89999999999984 543 3789999999999999998 78887778899999999999998 78887
Q ss_pred ccccCcCCCCCCCcEEecCc
Q 039460 129 VFWFDILDENGLPFLEQTAN 148 (182)
Q Consensus 129 ~~~l~~l~~~~L~~l~l~~N 148 (182)
+.... .|+.+.+++|
T Consensus 205 ~~~~~-----~L~~l~~~~N 219 (394)
T COG4886 205 IELLS-----ALEELDLSNN 219 (394)
T ss_pred hhhhh-----hhhhhhhcCC
Confidence 54444 5677777777
No 40
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.56 E-value=4.9e-05 Score=58.80 Aligned_cols=102 Identities=22% Similarity=0.269 Sum_probs=71.2
Q ss_pred CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCC--cCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460 55 PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFN--SFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF 132 (182)
Q Consensus 55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n--~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 132 (182)
.+..|+.+.+.+..++. +- .+..|++|+.|.++.| +..+.++.....+++|+++++++|++. ++.++..+
T Consensus 41 ~~~~le~ls~~n~gltt-~~-----~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl 112 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTT-LT-----NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPL 112 (260)
T ss_pred cccchhhhhhhccceee-cc-----cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchh
Confidence 44566666666666653 22 4778889999999999 666667666667799999999999985 35555555
Q ss_pred CcCCCCCCCcEEecCcccCcc------cccccccCCCCcc
Q 039460 133 DILDENGLPFLEQTANRLSLE------SIDCIQDLIYLGG 166 (182)
Q Consensus 133 ~~l~~~~L~~l~l~~N~~~~~------~~~~l~~L~~l~g 166 (182)
+.+. +|..|++.++..+.. ++..+++|..+.|
T Consensus 113 ~~l~--nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 113 KELE--NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhhc--chhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 4332 577888887776632 5666777766654
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.52 E-value=7.8e-06 Score=71.41 Aligned_cols=86 Identities=31% Similarity=0.397 Sum_probs=62.1
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch-hccCCCCCCEEEcccccccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS-SLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
+.-++.+++|||++|+++.. - .+..+++|++|||++|.++ .+|. ....+. |+.|.+.+|.++ . -..+.+
T Consensus 183 Lqll~ale~LnLshNk~~~v-~-----~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-t-L~gie~ 252 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNKFTKV-D-----NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-T-LRGIEN 252 (1096)
T ss_pred HHHHHHhhhhccchhhhhhh-H-----HHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHH-h-hhhHHh
Confidence 44467889999999998853 2 4778899999999999987 6765 233444 888888888886 2 233455
Q ss_pred cCcCCCCCCCcEEecCcccCcc
Q 039460 132 FDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
++ +|+.||++.|.+.+.
T Consensus 253 Lk-----sL~~LDlsyNll~~h 269 (1096)
T KOG1859|consen 253 LK-----SLYGLDLSYNLLSEH 269 (1096)
T ss_pred hh-----hhhccchhHhhhhcc
Confidence 55 778888888877743
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.39 E-value=7e-05 Score=67.98 Aligned_cols=85 Identities=25% Similarity=0.214 Sum_probs=70.9
Q ss_pred CCCCCEEECcCCcc-ccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCc
Q 039460 56 FQQLESLDLIGNNI-VGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDI 134 (182)
Q Consensus 56 l~~L~~L~Ls~n~l-~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~ 134 (182)
.+.|++|-+..|.. ...++.. .|..++.|++|||++|.--+.+|..++.+-+|++|++++..+. .+|..++.++
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~---ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk- 618 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGE---FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLK- 618 (889)
T ss_pred CCccceEEEeecchhhhhcCHH---HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHH-
Confidence 34788998888862 2234432 4788999999999998877799999999999999999999998 8999999999
Q ss_pred CCCCCCCcEEecCcc
Q 039460 135 LDENGLPFLEQTANR 149 (182)
Q Consensus 135 l~~~~L~~l~l~~N~ 149 (182)
.|.+|++..+.
T Consensus 619 ----~L~~Lnl~~~~ 629 (889)
T KOG4658|consen 619 ----KLIYLNLEVTG 629 (889)
T ss_pred ----hhheecccccc
Confidence 78888887654
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=6.8e-05 Score=62.01 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=9.2
Q ss_pred CCCcEEecCcccC
Q 039460 139 GLPFLEQTANRLS 151 (182)
Q Consensus 139 ~L~~l~l~~N~~~ 151 (182)
.|+.|++++|++-
T Consensus 247 ~L~~LdLs~N~li 259 (505)
T KOG3207|consen 247 TLQELDLSNNNLI 259 (505)
T ss_pred HHhhccccCCccc
Confidence 5677778777665
No 44
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.17 E-value=0.0002 Score=59.88 Aligned_cols=85 Identities=33% Similarity=0.453 Sum_probs=42.1
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF 132 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 132 (182)
+..++.+..|++..|.+... .. .+..+++|++|++++|.++.. . .+..++.|+.|++.+|.++ .+. .+..+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~----~l~~~~~L~~L~ls~N~I~~i-~-~l~~l~~L~~L~l~~N~i~-~~~-~~~~l 161 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-EN----LLSSLVNLQVLDLSFNKITKL-E-GLSTLTLLKELNLSGNLIS-DIS-GLESL 161 (414)
T ss_pred cccccceeeeeccccchhhc-cc----chhhhhcchheeccccccccc-c-chhhccchhhheeccCcch-hcc-CCccc
Confidence 44555666666666666542 21 144566666666666665522 1 1334444566666666654 222 12223
Q ss_pred CcCCCCCCCcEEecCcccC
Q 039460 133 DILDENGLPFLEQTANRLS 151 (182)
Q Consensus 133 ~~l~~~~L~~l~l~~N~~~ 151 (182)
. .|+.+++++|.++
T Consensus 162 ~-----~L~~l~l~~n~i~ 175 (414)
T KOG0531|consen 162 K-----SLKLLDLSYNRIV 175 (414)
T ss_pred h-----hhhcccCCcchhh
Confidence 3 4555555555554
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.05 E-value=0.0012 Score=49.72 Aligned_cols=93 Identities=20% Similarity=0.228 Sum_probs=61.6
Q ss_pred CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccc--cccccCc
Q 039460 57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVI--KVFWFDI 134 (182)
Q Consensus 57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~--~~~~l~~ 134 (182)
.+...+||+.|.+-- ++ .|..++.|++|.++.|+++..-|.--..+++|..|.|.+|.+. ++-+ -+..++
T Consensus 42 d~~d~iDLtdNdl~~-l~-----~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p- 113 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK-LD-----NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCP- 113 (233)
T ss_pred cccceecccccchhh-cc-----cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCC-
Confidence 356778888888753 44 4788888899999998888433433335577888888888886 2211 122333
Q ss_pred CCCCCCCcEEecCcccCcc------cccccccC
Q 039460 135 LDENGLPFLEQTANRLSLE------SIDCIQDL 161 (182)
Q Consensus 135 l~~~~L~~l~l~~N~~~~~------~~~~l~~L 161 (182)
.|++|.+-+|..+-. ++..+++|
T Consensus 114 ----~L~~Ltll~Npv~~k~~YR~yvl~klp~l 142 (233)
T KOG1644|consen 114 ----KLEYLTLLGNPVEHKKNYRLYVLYKLPSL 142 (233)
T ss_pred ----ccceeeecCCchhcccCceeEEEEecCcc
Confidence 778888888877733 45555555
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.00 E-value=0.00018 Score=60.15 Aligned_cols=85 Identities=33% Similarity=0.341 Sum_probs=64.9
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccc-ccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK-VFW 131 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~~~ 131 (182)
+..+.+|++|++++|.|+. +. .+..++.|+.|++++|.++ .+ ..+..++.|+.+++++|.+.. +... ...
T Consensus 114 l~~~~~L~~L~ls~N~I~~-i~-----~l~~l~~L~~L~l~~N~i~-~~-~~~~~l~~L~~l~l~~n~i~~-ie~~~~~~ 184 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITK-LE-----GLSTLTLLKELNLSGNLIS-DI-SGLESLKSLKLLDLSYNRIVD-IENDELSE 184 (414)
T ss_pred hhhhhcchheecccccccc-cc-----chhhccchhhheeccCcch-hc-cCCccchhhhcccCCcchhhh-hhhhhhhh
Confidence 6678999999999999986 43 3788888999999999997 33 346668999999999999984 3332 234
Q ss_pred cCcCCCCCCCcEEecCcccC
Q 039460 132 FDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~ 151 (182)
+. +++.+++.+|.+.
T Consensus 185 ~~-----~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 185 LI-----SLEELDLGGNSIR 199 (414)
T ss_pred cc-----chHHHhccCCchh
Confidence 44 5666667766665
No 47
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.93 E-value=5.5e-05 Score=66.28 Aligned_cols=89 Identities=24% Similarity=0.263 Sum_probs=64.7
Q ss_pred CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccc-cccc
Q 039460 51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSV-VIKV 129 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~-p~~~ 129 (182)
..+..+++|++|||++|.+. .+|.. ....+. |+.|.+.+|.++ .+ ..+.++++|+.||+++|-+.+.- -..+
T Consensus 203 ~~Lr~l~~LkhLDlsyN~L~-~vp~l---~~~gc~-L~~L~lrnN~l~-tL-~gie~LksL~~LDlsyNll~~hseL~pL 275 (1096)
T KOG1859|consen 203 DNLRRLPKLKHLDLSYNCLR-HVPQL---SMVGCK-LQLLNLRNNALT-TL-RGIENLKSLYGLDLSYNLLSEHSELEPL 275 (1096)
T ss_pred HHHHhcccccccccccchhc-ccccc---chhhhh-heeeeecccHHH-hh-hhHHhhhhhhccchhHhhhhcchhhhHH
Confidence 45667899999999999998 47762 223333 999999999987 33 34779999999999999998531 1122
Q ss_pred cccCcCCCCCCCcEEecCcccC
Q 039460 130 FWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
..+. .|+.|++.+|.+-
T Consensus 276 wsLs-----~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 276 WSLS-----SLIVLWLEGNPLC 292 (1096)
T ss_pred HHHH-----HHHHHhhcCCccc
Confidence 3333 6677888888765
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.55 E-value=0.00016 Score=51.33 Aligned_cols=68 Identities=25% Similarity=0.343 Sum_probs=59.0
Q ss_pred CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 55 PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
.++.++.|++++|.+. .+|. .+..++.|+.|+++.|.+. ..|..+..+.++-+|+...|... ++|-.+
T Consensus 75 kf~t~t~lNl~~neis-dvPe----E~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl 142 (177)
T KOG4579|consen 75 KFPTATTLNLANNEIS-DVPE----ELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDL 142 (177)
T ss_pred ccchhhhhhcchhhhh-hchH----HHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHH
Confidence 3458899999999998 4888 5999999999999999998 77887888999999999999886 777654
No 49
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.41 E-value=0.0015 Score=31.15 Aligned_cols=21 Identities=29% Similarity=0.281 Sum_probs=16.9
Q ss_pred CCCEEEcccccccccccccccc
Q 039460 110 SLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 110 ~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
+|++|++++|+++ .+|..++.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4789999999998 88887643
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.30 E-value=0.0069 Score=45.67 Aligned_cols=86 Identities=24% Similarity=0.225 Sum_probs=63.3
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccC-CCCCCcEEEccCCcCCcccch--hccCCCCCCEEEccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLS-RLSNLKFLRLDFNSFNNSIFS--SLGGLSSLRCLSLRSNRLNGSVV 126 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~-~l~~L~~L~L~~n~l~g~~p~--~~~~l~~L~~L~L~~N~l~g~~p 126 (182)
...|..++.|..|.+++|+|+..-|. +. .+++|+.|.|.+|++. .+-+ .+..++.|++|.+-+|..+. .+
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~-----L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Ltll~Npv~~-k~ 129 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPD-----LDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLTLLGNPVEH-KK 129 (233)
T ss_pred cccCCCccccceEEecCCcceeeccc-----hhhhccccceEEecCcchh-hhhhcchhccCCccceeeecCCchhc-cc
Confidence 45677889999999999999964443 54 4678999999999985 3322 35678999999999998873 22
Q ss_pred c----cccccCcCCCCCCCcEEecC
Q 039460 127 I----KVFWFDILDENGLPFLEQTA 147 (182)
Q Consensus 127 ~----~~~~l~~l~~~~L~~l~l~~ 147 (182)
. .+..++ +|++||+.+
T Consensus 130 ~YR~yvl~klp-----~l~~LDF~k 149 (233)
T KOG1644|consen 130 NYRLYVLYKLP-----SLRTLDFQK 149 (233)
T ss_pred CceeEEEEecC-----cceEeehhh
Confidence 1 234455 888888753
No 51
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.19 E-value=7.1e-05 Score=57.49 Aligned_cols=92 Identities=16% Similarity=0.061 Sum_probs=78.9
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
..++..+...+.||++.|++.. +-. .|+-++.+..|+++.|.+. .+|..+++...++.+++..|+++ ..|.++
T Consensus 35 v~ei~~~kr~tvld~~s~r~vn-~~~----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~ 107 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLVN-LGK----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQ 107 (326)
T ss_pred hhhhhccceeeeehhhhhHHHh-hcc----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccc
Confidence 3466778899999999999874 333 5888899999999999997 78999999999999999999987 899999
Q ss_pred cccCcCCCCCCCcEEecCcccCcc
Q 039460 130 FWFDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
+.++ +++++++-+|.|+..
T Consensus 108 ~k~~-----~~k~~e~k~~~~~~~ 126 (326)
T KOG0473|consen 108 KKEP-----HPKKNEQKKTEFFRK 126 (326)
T ss_pred cccC-----CcchhhhccCcchHH
Confidence 9988 899999999988733
No 52
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=95.99 E-value=0.0022 Score=53.30 Aligned_cols=92 Identities=23% Similarity=0.171 Sum_probs=47.5
Q ss_pred CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccc--hhccCCCCCCEEEccccccccc-ccccccc
Q 039460 55 PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF--SSLGGLSSLRCLSLRSNRLNGS-VVIKVFW 131 (182)
Q Consensus 55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p--~~~~~l~~L~~L~L~~N~l~g~-~p~~~~~ 131 (182)
.++.|..|+|.+|...+.... ...-+..|+.|||++|.+- ..+ ...+.++.|+.|.++.+.+... +|+.=..
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~----~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~ 294 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKAT----STKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESL 294 (505)
T ss_pred hCCcHHHhhhhcccccceecc----hhhhhhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccch
Confidence 355666666666642221111 2334556777777777654 233 3455666677666666666531 2222000
Q ss_pred cCcCCCCCCCcEEecCcccC
Q 039460 132 FDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~ 151 (182)
...-...+|++|++..|++.
T Consensus 295 ~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 295 DKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred hhhcccccceeeecccCccc
Confidence 00112237788888887774
No 53
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.55 E-value=0.0083 Score=46.66 Aligned_cols=68 Identities=28% Similarity=0.379 Sum_probs=52.0
Q ss_pred CCCccCCCCCCEEECcCC--ccccccCcccccccCCCCCCcEEEccCCcCCcccchh---ccCCCCCCEEEcccccccc
Q 039460 50 CSLFTPFQQLESLDLIGN--NIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSS---LGGLSSLRCLSLRSNRLNG 123 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n--~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~---~~~l~~L~~L~L~~N~l~g 123 (182)
...+..|++|+.|++|.| ++.+.++. -.-.+++|+++++++|++. ++.. +..+.+|..|++.++..++
T Consensus 58 ~~~~P~Lp~LkkL~lsdn~~~~~~~l~v----l~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 58 LTNFPKLPKLKKLELSDNYRRVSGGLEV----LAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKSLDLFNCSVTN 130 (260)
T ss_pred cccCCCcchhhhhcccCCccccccccee----hhhhCCceeEEeecCCccc--cccccchhhhhcchhhhhcccCCccc
Confidence 446777899999999999 77777765 2445699999999999986 2433 4466778888888877664
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.32 E-value=0.0081 Score=53.54 Aligned_cols=93 Identities=27% Similarity=0.419 Sum_probs=54.4
Q ss_pred cCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCc-ccchhccCCCCCCEEEccccccccc--cccccc
Q 039460 54 TPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNN-SIFSSLGGLSSLRCLSLRSNRLNGS--VVIKVF 130 (182)
Q Consensus 54 ~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~L~L~~N~l~g~--~p~~~~ 130 (182)
.++++|..||+|+.+++. +- .++.+++|+.|.+-+=.+.. ..-..+.++++|++||+|....... +....-
T Consensus 170 ~sFpNL~sLDIS~TnI~n-l~-----GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYl 243 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISN-LS-----GISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYL 243 (699)
T ss_pred hccCccceeecCCCCccC-cH-----HHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHH
Confidence 357778888888877763 21 36677777777665433321 1112456788888888887665421 111111
Q ss_pred ccCcCCCCCCCcEEecCcccCcc
Q 039460 131 WFDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 131 ~l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
.+... .+.|++||.+++.+...
T Consensus 244 ec~~~-LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 244 ECGMV-LPELRFLDCSGTDINEE 265 (699)
T ss_pred Hhccc-CccccEEecCCcchhHH
Confidence 11111 23788888888777755
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.23 E-value=0.0034 Score=50.79 Aligned_cols=94 Identities=24% Similarity=0.186 Sum_probs=51.8
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcc----cchhcc-CCCCCCEEEccccccccc--
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS----IFSSLG-GLSSLRCLSLRSNRLNGS-- 124 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~----~p~~~~-~l~~L~~L~L~~N~l~g~-- 124 (182)
.+..+++|++|||..|.|+-.-.......++.+++|+.|+++++.+... +-..+. ..++|++|.+.+|.++..
T Consensus 208 al~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~ 287 (382)
T KOG1909|consen 208 ALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA 287 (382)
T ss_pred HHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH
Confidence 3456677777777777775321100011356666777777777766422 112221 356777777777777622
Q ss_pred --ccccccccCcCCCCCCCcEEecCccc
Q 039460 125 --VVIKVFWFDILDENGLPFLEQTANRL 150 (182)
Q Consensus 125 --~p~~~~~l~~l~~~~L~~l~l~~N~~ 150 (182)
+-..+...+ .|..|++++|.+
T Consensus 288 ~~la~~~~ek~-----dL~kLnLngN~l 310 (382)
T KOG1909|consen 288 LALAACMAEKP-----DLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhcch-----hhHHhcCCcccc
Confidence 111222223 677777777777
No 56
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=0.0069 Score=48.39 Aligned_cols=65 Identities=32% Similarity=0.323 Sum_probs=40.1
Q ss_pred CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460 56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN 122 (182)
Q Consensus 56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~ 122 (182)
.++++++||.+|.++. +.. ++.-+..|+.|++|+|+.|.+...|-..-..+.+|++|-|.+..+.
T Consensus 70 ~~~v~elDL~~N~iSd-Wse-I~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~ 134 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISD-WSE-IGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLS 134 (418)
T ss_pred hhhhhhhhcccchhcc-HHH-HHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCC
Confidence 3567778888887763 211 1112456778888888888776544332235567777777766664
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.07 E-value=0.0091 Score=53.21 Aligned_cols=86 Identities=20% Similarity=0.315 Sum_probs=64.1
Q ss_pred CCCCCCEEECcCCccccc-cCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc-ccccccccc
Q 039460 55 PFQQLESLDLIGNNIVGC-VENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG-SVVIKVFWF 132 (182)
Q Consensus 55 ~l~~L~~L~Ls~n~l~g~-~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~~l 132 (182)
.||.|+.|.+.+-.+... +-. -+.++++|..||+++..++ .+ ..++.+++|++|.+.+=.+.. ..-..++.|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~----lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQ----LCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred hCcccceEEecCceecchhHHH----HhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 478999999988776432 222 3568999999999999887 33 678899999999887766652 222356667
Q ss_pred CcCCCCCCCcEEecCcccC
Q 039460 133 DILDENGLPFLEQTANRLS 151 (182)
Q Consensus 133 ~~l~~~~L~~l~l~~N~~~ 151 (182)
+ +|++||+|.....
T Consensus 220 ~-----~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 220 K-----KLRVLDISRDKNN 233 (699)
T ss_pred c-----CCCeeeccccccc
Confidence 7 9999999977655
No 58
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.41 E-value=0.026 Score=25.00 Aligned_cols=11 Identities=64% Similarity=0.905 Sum_probs=3.5
Q ss_pred CCEEEcccccc
Q 039460 111 LRCLSLRSNRL 121 (182)
Q Consensus 111 L~~L~L~~N~l 121 (182)
|+.|+|++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.00 E-value=0.0035 Score=49.59 Aligned_cols=68 Identities=34% Similarity=0.294 Sum_probs=52.6
Q ss_pred cCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch--hccCCCCCCEEEccccccccccccc
Q 039460 54 TPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS--SLGGLSSLRCLSLRSNRLNGSVVIK 128 (182)
Q Consensus 54 ~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~--~~~~l~~L~~L~L~~N~l~g~~p~~ 128 (182)
..++.|++|.||-|.|+..-| +..+++|+.|+|..|.+. .+.+ -+.++++|+.|+|..|...|.-+..
T Consensus 38 ~kMp~lEVLsLSvNkIssL~p------l~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~n 107 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLAP------LQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQN 107 (388)
T ss_pred HhcccceeEEeeccccccchh------HHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchh
Confidence 457889999999999985432 778899999999998876 4443 3568889999999988888776553
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=93.79 E-value=0.17 Score=42.44 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=42.4
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccC-CcCCcccchhccCCCCCCEEEcccc-ccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDF-NSFNNSIFSSLGGLSSLRCLSLRSN-RLNGSVVIKVF 130 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~-n~l~g~~p~~~~~l~~L~~L~L~~N-~l~g~~p~~~~ 130 (182)
+..+.+++.|++++|.++. +|. + ..+|+.|.+++ +.+. .+|..+. ++|+.|++++| .+. .+|..+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~-----L--P~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV-----L--PNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC-----C--CCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-ccccccc
Confidence 3345788899999887763 442 2 23588888876 3443 5665442 57888888877 443 5666554
Q ss_pred c
Q 039460 131 W 131 (182)
Q Consensus 131 ~ 131 (182)
.
T Consensus 116 ~ 116 (426)
T PRK15386 116 S 116 (426)
T ss_pred e
Confidence 3
No 61
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.46 E-value=0.065 Score=26.24 Aligned_cols=18 Identities=39% Similarity=0.482 Sum_probs=8.9
Q ss_pred CCCCEEEcccccccccccc
Q 039460 109 SSLRCLSLRSNRLNGSVVI 127 (182)
Q Consensus 109 ~~L~~L~L~~N~l~g~~p~ 127 (182)
++|++|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555554 3443
No 62
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.46 E-value=0.065 Score=26.24 Aligned_cols=18 Identities=39% Similarity=0.482 Sum_probs=8.9
Q ss_pred CCCCEEEcccccccccccc
Q 039460 109 SSLRCLSLRSNRLNGSVVI 127 (182)
Q Consensus 109 ~~L~~L~L~~N~l~g~~p~ 127 (182)
++|++|+|++|+++ .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 34555555555554 3443
No 63
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.20 E-value=0.0021 Score=50.85 Aligned_cols=97 Identities=20% Similarity=0.273 Sum_probs=69.0
Q ss_pred CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460 56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL 135 (182)
Q Consensus 56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l 135 (182)
+..++.|++=++.+.. |. -+..|+.|++|.|+-|+++. + ..+..+++|+.|+|..|.|. .+ ..+..++
T Consensus 18 l~~vkKLNcwg~~L~D-Is-----ic~kMp~lEVLsLSvNkIss-L-~pl~rCtrLkElYLRkN~I~-sl-dEL~YLk-- 85 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDD-IS-----ICEKMPLLEVLSLSVNKISS-L-APLQRCTRLKELYLRKNCIE-SL-DELEYLK-- 85 (388)
T ss_pred HHHhhhhcccCCCccH-HH-----HHHhcccceeEEeecccccc-c-hhHHHHHHHHHHHHHhcccc-cH-HHHHHHh--
Confidence 4566777777777764 32 25679999999999999973 3 34678999999999999986 33 2344443
Q ss_pred CCCCCCcEEecCcccCcc--------cccccccCCCC
Q 039460 136 DENGLPFLEQTANRLSLE--------SIDCIQDLIYL 164 (182)
Q Consensus 136 ~~~~L~~l~l~~N~~~~~--------~~~~l~~L~~l 164 (182)
+.++|+.|.+..|.-.|. ++..++||..|
T Consensus 86 nlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 86 NLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred cCchhhhHhhccCCcccccchhHHHHHHHHcccchhc
Confidence 224899999998887744 56666666444
No 64
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=92.86 E-value=0.091 Score=41.70 Aligned_cols=71 Identities=21% Similarity=0.218 Sum_probs=52.0
Q ss_pred CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch-h-------------ccCCCCCCEEEc
Q 039460 51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS-S-------------LGGLSSLRCLSL 116 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~-~-------------~~~l~~L~~L~L 116 (182)
+.+..+++|+.++||.|.|....|++...-++.-+.|++|.+++|.+. ++.. . ...-|.|++...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 455678999999999999987777653334667788999999999874 3322 1 223477888888
Q ss_pred cccccc
Q 039460 117 RSNRLN 122 (182)
Q Consensus 117 ~~N~l~ 122 (182)
.+|++.
T Consensus 165 grNRle 170 (388)
T COG5238 165 GRNRLE 170 (388)
T ss_pred ccchhc
Confidence 888875
No 65
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=92.66 E-value=0.12 Score=25.20 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=10.8
Q ss_pred CCCcEEEccCCcCCcccch
Q 039460 85 SNLKFLRLDFNSFNNSIFS 103 (182)
Q Consensus 85 ~~L~~L~L~~n~l~g~~p~ 103 (182)
++|++|+|++|.+. .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45666666666665 4444
No 66
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=92.66 E-value=0.12 Score=25.20 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=10.8
Q ss_pred CCCcEEEccCCcCCcccch
Q 039460 85 SNLKFLRLDFNSFNNSIFS 103 (182)
Q Consensus 85 ~~L~~L~L~~n~l~g~~p~ 103 (182)
++|++|+|++|.+. .+|.
T Consensus 2 ~~L~~L~L~~N~l~-~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPP 19 (26)
T ss_pred CCCCEEECCCCcCC-cCCH
Confidence 45666666666665 4444
No 67
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=91.06 E-value=0.078 Score=42.08 Aligned_cols=41 Identities=24% Similarity=0.317 Sum_probs=22.6
Q ss_pred cCCCCCCcEEEccCCcCCcccchh----ccCCCCCCEEEcccccc
Q 039460 81 LSRLSNLKFLRLDFNSFNNSIFSS----LGGLSSLRCLSLRSNRL 121 (182)
Q Consensus 81 ~~~l~~L~~L~L~~n~l~g~~p~~----~~~l~~L~~L~L~~N~l 121 (182)
+..+++|+..+||.|.+....|+. +..-..|.+|.+++|.+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 444556666666666665444443 33445566666666555
No 68
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.94 E-value=0.16 Score=40.89 Aligned_cols=64 Identities=27% Similarity=0.348 Sum_probs=46.9
Q ss_pred ccCCCCCCEEECcCCccccccCccccccc-CCCCCCcEEEccCCcCCccc-chhccCCCCCCEEEcccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRL-SRLSNLKFLRLDFNSFNNSI-FSSLGGLSSLRCLSLRSNRL 121 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~-~~l~~L~~L~L~~n~l~g~~-p~~~~~l~~L~~L~L~~N~l 121 (182)
+..+++|++|+++.|.+...|-. + ..+.+|++|-|.+..+.-.- ...+..+|.++.|.++.|.+
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~-----lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKS-----LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred HhcCccceEeeccCCcCCCcccc-----CcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 45789999999999999865543 3 35678999988887775433 23455677778888877744
No 69
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=89.84 E-value=0.11 Score=42.25 Aligned_cols=13 Identities=31% Similarity=0.503 Sum_probs=7.6
Q ss_pred CCCcEEecCcccC
Q 039460 139 GLPFLEQTANRLS 151 (182)
Q Consensus 139 ~L~~l~l~~N~~~ 151 (182)
+|+++.+.+|.++
T Consensus 271 ~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 271 SLEVLELAGNEIT 283 (382)
T ss_pred CCceeccCcchhH
Confidence 5555666666555
No 70
>PRK15386 type III secretion protein GogB; Provisional
Probab=88.44 E-value=0.71 Score=38.83 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=38.4
Q ss_pred cCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccc-ccccccccccccccCcCCCCCCCcEEecCc
Q 039460 81 LSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRS-NRLNGSVVIKVFWFDILDENGLPFLEQTAN 148 (182)
Q Consensus 81 ~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~-N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N 148 (182)
+..+.++..|+++++.++ .+|. -..+|+.|.+++ ++++ .+|..+. . +|+.|++.+|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP--~-----nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP--E-----GLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh--h-----hhhheEccCc
Confidence 555688999999999887 6672 234699999986 4443 5665431 2 5666666665
No 71
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.84 E-value=0.11 Score=24.84 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=4.8
Q ss_pred CCCEEEccccccc
Q 039460 110 SLRCLSLRSNRLN 122 (182)
Q Consensus 110 ~L~~L~L~~N~l~ 122 (182)
+|++|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 72
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=87.28 E-value=2.9 Score=28.27 Aligned_cols=83 Identities=20% Similarity=0.237 Sum_probs=37.0
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch-hccCCCCCCEEEcccccccccccc-cc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS-SLGGLSSLRCLSLRSNRLNGSVVI-KV 129 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~L~~N~l~g~~p~-~~ 129 (182)
.|...++|+.+.+.. .+. .++.. .|..+++|+.+.+..+ +. .++. .|..++.++.+.+.. .+. .++. .+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~-~I~~~---~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F 77 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIK-KIGEN---AFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLK-SIGDNAF 77 (129)
T ss_dssp TTTT-TT--EEEETS-T---EE-TT---TTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT--EE-TTTT
T ss_pred HHhCCCCCCEEEECC-Cee-EeChh---hccccccccccccccc-cc-ccceeeeecccccccccccc-ccc-ccccccc
Confidence 345556677777663 344 24442 5666667777777664 44 3333 556666677777654 332 2232 23
Q ss_pred cccCcCCCCCCCcEEecCc
Q 039460 130 FWFDILDENGLPFLEQTAN 148 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N 148 (182)
..+. +++.+.+..+
T Consensus 78 ~~~~-----~l~~i~~~~~ 91 (129)
T PF13306_consen 78 SNCT-----NLKNIDIPSN 91 (129)
T ss_dssp TT-T-----TECEEEETTT
T ss_pred cccc-----cccccccCcc
Confidence 3344 5666666443
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.23 E-value=4.2 Score=27.45 Aligned_cols=84 Identities=15% Similarity=0.248 Sum_probs=46.7
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccc-hhccCCCCCCEEEccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF-SSLGGLSSLRCLSLRSNRLNGSVVIK 128 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~L~~N~l~g~~p~~ 128 (182)
...|..++.|+.+.+..+ +. .++.. .|..+.+++.+.+.. .+. .++ ..|..+++|+.+++..+ +. .++..
T Consensus 28 ~~~F~~~~~l~~i~~~~~-~~-~i~~~---~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~ 98 (129)
T PF13306_consen 28 ENAFSNCTSLKSINFPNN-LT-SIGDN---AFSNCKSLESITFPN-NLK-SIGDNAFSNCTNLKNIDIPSN-IT-EIGSS 98 (129)
T ss_dssp TTTTTT-TT-SEEEESST-TS-CE-TT---TTTT-TT-EEEEETS-TT--EE-TTTTTT-TTECEEEETTT--B-EEHTT
T ss_pred hhhccccccccccccccc-cc-cccee---eeecccccccccccc-ccc-ccccccccccccccccccCcc-cc-EEchh
Confidence 456778889999999875 54 35542 688888899999976 443 333 46677899999998765 43 34433
Q ss_pred ccccCcCCCCCCCcEEecC
Q 039460 129 VFWFDILDENGLPFLEQTA 147 (182)
Q Consensus 129 ~~~l~~l~~~~L~~l~l~~ 147 (182)
...-. .++.+.+..
T Consensus 99 ~f~~~-----~l~~i~~~~ 112 (129)
T PF13306_consen 99 SFSNC-----NLKEINIPS 112 (129)
T ss_dssp TTTT------T--EEE-TT
T ss_pred hhcCC-----CceEEEECC
Confidence 22212 456665543
No 74
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=83.91 E-value=0.72 Score=22.83 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=11.2
Q ss_pred CCCEEEcccccccccccc
Q 039460 110 SLRCLSLRSNRLNGSVVI 127 (182)
Q Consensus 110 ~L~~L~L~~N~l~g~~p~ 127 (182)
+|+.|++++|+++ .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 5667777777776 5554
No 75
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=81.33 E-value=1.4 Score=21.76 Aligned_cols=14 Identities=50% Similarity=0.603 Sum_probs=7.4
Q ss_pred CCCCEEECcCCccc
Q 039460 57 QQLESLDLIGNNIV 70 (182)
Q Consensus 57 ~~L~~L~Ls~n~l~ 70 (182)
.+|++|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555553
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=81.21 E-value=0.85 Score=36.86 Aligned_cols=63 Identities=21% Similarity=0.227 Sum_probs=40.7
Q ss_pred CCCCCcEEEccCCc-CCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcc
Q 039460 83 RLSNLKFLRLDFNS-FNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANR 149 (182)
Q Consensus 83 ~l~~L~~L~L~~n~-l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~ 149 (182)
.+++|..|||+.+. ++...-..|.+++.|++|.++.+. +.+|..+-.+. ..++|.||++.+.-
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~~~~l~--s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPETLLELN--SKPSLVYLDVFGCV 374 (419)
T ss_pred hCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHHeeeec--cCcceEEEEecccc
Confidence 45778888887754 443444566677888888877655 45676654443 23477888876643
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=77.16 E-value=2 Score=21.34 Aligned_cols=13 Identities=38% Similarity=0.519 Sum_probs=7.5
Q ss_pred CCCEEECcCCccc
Q 039460 58 QLESLDLIGNNIV 70 (182)
Q Consensus 58 ~L~~L~Ls~n~l~ 70 (182)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4556666666553
No 78
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=75.34 E-value=1.2 Score=35.94 Aligned_cols=58 Identities=21% Similarity=0.119 Sum_probs=42.4
Q ss_pred CCCCCCEEECcCCcc-ccccCcccccccCCCCCCcEEEccCCcCCcccch---hccCCCCCCEEEccc
Q 039460 55 PFQQLESLDLIGNNI-VGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS---SLGGLSSLRCLSLRS 118 (182)
Q Consensus 55 ~l~~L~~L~Ls~n~l-~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~---~~~~l~~L~~L~L~~ 118 (182)
.+++|..||||.+.. +...-. .|-.++.|++|.++++.. .+|. .+..+|.|.+|++.+
T Consensus 311 rcp~l~~LDLSD~v~l~~~~~~----~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g 372 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKNDCFQ----EFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFG 372 (419)
T ss_pred hCCceeeeccccccccCchHHH----HHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecc
Confidence 578999999998643 322222 467889999999988753 5665 466789999998764
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=66.77 E-value=0.11 Score=40.32 Aligned_cols=65 Identities=14% Similarity=0.002 Sum_probs=55.6
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN 122 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~ 122 (182)
.|.-++.+..||++.|.+.. +|. ++..+..++.+++..|..+ ..|.+++..+.++++++-.|.|.
T Consensus 60 n~s~~t~~~rl~~sknq~~~-~~~----d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 60 NFSILTRLVRLDLSKNQIKF-LPK----DAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred chHHHHHHHHHhccHhhHhh-Chh----hHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 45556788899999999974 676 6888888999999888877 89999999999999999998876
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.18 E-value=15 Score=32.14 Aligned_cols=64 Identities=20% Similarity=0.062 Sum_probs=35.7
Q ss_pred CCCCcEEEccCCcCCcccch---hccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460 84 LSNLKFLRLDFNSFNNSIFS---SLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 84 l~~L~~L~L~~n~l~g~~p~---~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
.+.+..+.|+.|++. .+.. --...|+|..|+|++|...-..-..+.. +....|+.|-+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K---~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKISSESELDK---LKGLPLEELVLEGNPLC 283 (585)
T ss_pred Ccceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhcchhhhhh---hcCCCHHHeeecCCccc
Confidence 445667777777764 2221 1224577888888888221111122222 22336788888888777
No 81
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=31.97 E-value=29 Score=36.14 Aligned_cols=32 Identities=31% Similarity=0.406 Sum_probs=23.4
Q ss_pred ECcCCccccccCcccccccCCCCCCcEEEccCCcCC
Q 039460 63 DLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFN 98 (182)
Q Consensus 63 ~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~ 98 (182)
||++|+|+- +|.. .|..+.+|+.|+|++|.+.
T Consensus 1 DLSnN~Lst-Lp~g---~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKIST-IEEG---ICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCc-cChH---HhccCCCceEEEeeCCccc
Confidence 577888873 5653 6777888888888888664
No 82
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=31.88 E-value=33 Score=35.82 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=26.3
Q ss_pred EccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460 91 RLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN 122 (182)
Q Consensus 91 ~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~ 122 (182)
||++|+|.-.-+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 58899998444457888999999999999885
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=31.35 E-value=37 Score=16.11 Aligned_cols=10 Identities=50% Similarity=0.700 Sum_probs=4.8
Q ss_pred CCCEEECcCC
Q 039460 58 QLESLDLIGN 67 (182)
Q Consensus 58 ~L~~L~Ls~n 67 (182)
+|++|+++++
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 4445554443
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=29.13 E-value=26 Score=30.70 Aligned_cols=67 Identities=31% Similarity=0.311 Sum_probs=39.6
Q ss_pred CCCCCCEEECcCCccccccCccccccc-CCCCCCcEEEccCCcCCcccchhccCC--CCCCEEEccccccccc
Q 039460 55 PFQQLESLDLIGNNIVGCVENEGLGRL-SRLSNLKFLRLDFNSFNNSIFSSLGGL--SSLRCLSLRSNRLNGS 124 (182)
Q Consensus 55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~-~~l~~L~~L~L~~n~l~g~~p~~~~~l--~~L~~L~L~~N~l~g~ 124 (182)
+.+.+..+.|++|++.. +.. ...+ ...++|..|+|++|...-..-.++.++ ..|+.|.+.+|.+...
T Consensus 216 n~p~i~sl~lsnNrL~~-Ld~--~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYH-LDA--LSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhc-hhh--hhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 45677888899988863 222 0112 235678899999982211122223322 3467888888888643
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=28.43 E-value=30 Score=28.82 Aligned_cols=39 Identities=28% Similarity=0.197 Sum_probs=19.4
Q ss_pred CCCCCCcEEEccCCc-CCcccchhcc-CCCCCCEEEccccc
Q 039460 82 SRLSNLKFLRLDFNS-FNNSIFSSLG-GLSSLRCLSLRSNR 120 (182)
Q Consensus 82 ~~l~~L~~L~L~~n~-l~g~~p~~~~-~l~~L~~L~L~~N~ 120 (182)
..+.+|+.+++++.. ++...-..+. .+++|+.|.+.+..
T Consensus 240 ~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~ 280 (482)
T KOG1947|consen 240 SICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS 280 (482)
T ss_pred hhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC
Confidence 345666677766655 3321112222 25667776654444
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.97 E-value=11 Score=28.74 Aligned_cols=11 Identities=36% Similarity=0.359 Sum_probs=6.7
Q ss_pred CCCCEEEcccc
Q 039460 109 SSLRCLSLRSN 119 (182)
Q Consensus 109 ~~L~~L~L~~N 119 (182)
++|+.|+|+++
T Consensus 151 ~~L~~L~lsgC 161 (221)
T KOG3864|consen 151 PSLQDLDLSGC 161 (221)
T ss_pred cchheeeccCC
Confidence 56666666643
Done!