Query 039460
Match_columns 182
No_of_seqs 205 out of 1632
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 16:53:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/039460.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/039460hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 99.9 5.8E-26 2E-30 180.6 10.6 137 1-153 3-164 (313)
2 3rgz_A Protein brassinosteroid 99.9 4E-23 1.4E-27 181.7 12.7 169 2-179 10-250 (768)
3 4eco_A Uncharacterized protein 99.9 4.7E-22 1.6E-26 171.8 12.0 160 3-179 29-333 (636)
4 4ecn_A Leucine-rich repeat pro 99.8 2.1E-21 7.1E-26 172.7 9.6 161 3-179 268-576 (876)
5 4fcg_A Uncharacterized protein 99.8 1.4E-21 4.8E-26 156.4 4.8 122 2-131 25-172 (328)
6 3e6j_A Variable lymphocyte rec 99.7 1.4E-16 4.7E-21 121.2 13.7 133 35-179 16-162 (229)
7 2o6s_A Variable lymphocyte rec 99.7 1.9E-16 6.4E-21 118.3 11.6 106 37-151 6-137 (208)
8 3m19_A Variable lymphocyte rec 99.7 5.8E-16 2E-20 118.9 11.5 119 52-179 54-182 (251)
9 2v9t_B SLIT homolog 2 protein 99.7 1.8E-15 6.3E-20 114.3 13.6 131 38-179 11-155 (220)
10 3rgz_A Protein brassinosteroid 99.7 3E-16 1E-20 138.0 10.4 69 53-125 486-554 (768)
11 2o6q_A Variable lymphocyte rec 99.6 2.1E-15 7.1E-20 117.0 12.1 91 52-151 56-146 (270)
12 2v70_A SLIT-2, SLIT homolog 2 99.6 3.1E-15 1.1E-19 113.0 11.8 132 38-179 11-156 (220)
13 1w8a_A SLIT protein; signaling 99.6 2.2E-15 7.4E-20 111.5 10.4 92 53-153 50-141 (192)
14 1ogq_A PGIP-2, polygalacturona 99.6 2.4E-15 8.1E-20 119.3 9.3 125 50-179 118-271 (313)
15 2z81_A CD282 antigen, TOLL-lik 99.6 2.9E-15 9.8E-20 126.4 10.2 89 52-149 45-134 (549)
16 4g8a_A TOLL-like receptor 4; l 99.6 4.8E-15 1.6E-19 126.2 11.6 120 19-151 10-137 (635)
17 4fcg_A Uncharacterized protein 99.6 5.3E-15 1.8E-19 118.1 9.8 113 56-179 182-304 (328)
18 3g39_A Variable lymphocyte rec 99.6 1.2E-14 3.9E-19 105.7 10.7 105 38-153 9-117 (170)
19 3vq2_A TLR4, TOLL-like recepto 99.6 2E-14 6.8E-19 122.6 12.6 106 35-151 4-117 (606)
20 4eco_A Uncharacterized protein 99.6 1.4E-15 4.7E-20 131.3 5.1 120 50-179 199-356 (636)
21 4b8c_D Glucose-repressible alc 99.6 1.1E-15 3.9E-20 133.8 4.6 74 53-133 220-293 (727)
22 3v47_A TOLL-like receptor 5B a 99.6 1.9E-14 6.6E-19 118.7 11.7 135 36-179 6-157 (455)
23 2o6r_A Variable lymphocyte rec 99.6 2.7E-14 9.3E-19 103.9 11.1 108 37-153 6-115 (177)
24 2ifg_A High affinity nerve gro 99.6 2.6E-14 8.8E-19 114.3 11.2 103 38-151 8-116 (347)
25 2z80_A TOLL-like receptor 2, v 99.5 3.5E-14 1.2E-18 113.9 10.4 117 52-178 71-200 (353)
26 3rfs_A Internalin B, repeat mo 99.5 8.5E-14 2.9E-18 108.1 11.9 120 51-179 79-208 (272)
27 2v70_A SLIT-2, SLIT homolog 2 99.5 1.1E-13 3.8E-18 104.5 11.4 93 52-153 52-144 (220)
28 2r9u_A Variable lymphocyte rec 99.5 1.7E-13 5.7E-18 100.0 11.9 105 38-153 12-120 (174)
29 2wfh_A SLIT homolog 2 protein 99.5 8.7E-14 3E-18 103.1 9.9 102 38-151 10-115 (193)
30 3rfs_A Internalin B, repeat mo 99.5 8.5E-14 2.9E-18 108.1 10.3 91 52-151 104-194 (272)
31 2je0_A Acidic leucine-rich nuc 99.5 5.9E-14 2E-18 99.3 8.4 90 51-151 36-126 (149)
32 2xot_A Amphoterin-induced prot 99.5 3.4E-13 1.2E-17 108.8 13.3 103 38-151 18-125 (361)
33 2v9t_B SLIT homolog 2 protein 99.5 2E-13 7E-18 103.0 11.3 95 50-153 49-143 (220)
34 1ozn_A Reticulon 4 receptor; N 99.5 2.2E-13 7.7E-18 106.1 11.5 41 82-122 102-142 (285)
35 3oja_B Anopheles plasmodium-re 99.5 1.8E-13 6E-18 117.2 11.9 65 54-122 72-136 (597)
36 2z62_A TOLL-like receptor 4, v 99.5 3.9E-13 1.3E-17 104.2 12.5 91 52-151 47-137 (276)
37 2id5_A Lingo-1, leucine rich r 99.5 3E-13 1E-17 112.4 12.1 92 51-151 50-141 (477)
38 4g8a_A TOLL-like receptor 4; l 99.5 2E-13 6.7E-18 116.2 11.1 121 50-179 69-200 (635)
39 3m19_A Variable lymphocyte rec 99.5 4E-13 1.4E-17 103.0 11.5 114 57-179 35-158 (251)
40 1ozn_A Reticulon 4 receptor; N 99.5 3.5E-13 1.2E-17 104.9 11.0 121 50-179 98-228 (285)
41 2z66_A Variable lymphocyte rec 99.5 3.6E-13 1.2E-17 105.8 10.9 115 52-175 121-246 (306)
42 2o6s_A Variable lymphocyte rec 99.5 6.7E-13 2.3E-17 98.8 11.8 114 56-179 27-151 (208)
43 2ell_A Acidic leucine-rich nuc 99.5 1.4E-13 4.8E-18 99.3 7.8 92 50-152 42-134 (168)
44 2z66_A Variable lymphocyte rec 99.5 3.3E-13 1.1E-17 106.0 10.6 67 81-152 122-189 (306)
45 3vq2_A TLR4, TOLL-like recepto 99.5 2.2E-13 7.5E-18 116.2 10.0 120 50-178 49-179 (606)
46 3zyi_A Leucine-rich repeat-con 99.4 8.8E-13 3E-17 109.2 12.8 70 50-123 92-161 (452)
47 2o6q_A Variable lymphocyte rec 99.4 1.1E-12 3.8E-17 101.5 12.4 119 51-179 79-208 (270)
48 3e6j_A Variable lymphocyte rec 99.4 8.1E-13 2.8E-17 100.2 11.3 102 50-161 57-161 (229)
49 1w8a_A SLIT protein; signaling 99.4 5.8E-13 2E-17 98.4 9.5 114 38-161 8-128 (192)
50 3t6q_A CD180 antigen; protein- 99.4 4.8E-13 1.6E-17 114.1 10.2 93 51-152 51-143 (606)
51 3v47_A TOLL-like receptor 5B a 99.4 1E-12 3.4E-17 108.3 11.3 111 50-169 292-412 (455)
52 2z62_A TOLL-like receptor 4, v 99.4 1E-12 3.5E-17 101.8 10.3 85 58-151 29-113 (276)
53 1p9a_G Platelet glycoprotein I 99.4 1.9E-12 6.5E-17 101.6 11.9 86 56-151 76-161 (290)
54 2z7x_B TOLL-like receptor 1, v 99.4 1.2E-12 3.9E-17 109.9 11.3 91 54-153 321-414 (520)
55 4ezg_A Putative uncharacterize 99.4 9.5E-13 3.2E-17 97.4 9.5 87 52-149 61-147 (197)
56 3j0a_A TOLL-like receptor 5; m 99.4 9.3E-13 3.2E-17 116.9 11.1 94 50-151 41-136 (844)
57 1ziw_A TOLL-like receptor 3; i 99.4 8.6E-13 2.9E-17 114.0 10.5 91 53-152 45-135 (680)
58 1p9a_G Platelet glycoprotein I 99.4 1.5E-12 5E-17 102.2 10.8 117 50-179 48-175 (290)
59 2je0_A Acidic leucine-rich nuc 99.4 5.5E-13 1.9E-17 94.2 7.5 112 56-179 16-143 (149)
60 3t6q_A CD180 antigen; protein- 99.4 2E-12 7E-17 110.2 12.2 111 40-161 14-131 (606)
61 2z63_A TOLL-like receptor 4, v 99.4 2.1E-12 7.2E-17 109.1 12.2 91 52-151 47-137 (570)
62 3j0a_A TOLL-like receptor 5; m 99.4 1.8E-12 6.1E-17 115.1 12.2 117 55-180 22-152 (844)
63 1xku_A Decorin; proteoglycan, 99.4 3.5E-12 1.2E-16 101.3 12.3 102 37-152 30-135 (330)
64 2z7x_B TOLL-like receptor 1, v 99.4 1.8E-12 6E-17 108.8 10.7 114 51-176 39-164 (520)
65 4ecn_A Leucine-rich repeat pro 99.4 2.7E-13 9.1E-18 120.8 5.8 119 50-179 482-622 (876)
66 4ezg_A Putative uncharacterize 99.4 1.9E-12 6.3E-17 95.9 9.3 102 50-161 81-183 (197)
67 2ft3_A Biglycan; proteoglycan, 99.4 5.6E-12 1.9E-16 100.2 12.6 100 38-151 33-136 (332)
68 4b8c_D Glucose-repressible alc 99.4 4.2E-13 1.5E-17 117.6 6.4 115 50-176 240-365 (727)
69 2wfh_A SLIT homolog 2 protein 99.4 2.8E-12 9.4E-17 95.0 9.8 94 50-152 47-140 (193)
70 3o6n_A APL1; leucine-rich repe 99.4 1.3E-12 4.6E-17 105.9 8.6 99 53-161 65-167 (390)
71 2id5_A Lingo-1, leucine rich r 99.4 2.6E-12 8.8E-17 106.8 10.5 121 50-179 73-203 (477)
72 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 3.8E-12 1.3E-16 108.0 11.3 91 54-153 350-443 (562)
73 3zyj_A Leucine-rich repeat-con 99.4 5.5E-12 1.9E-16 104.0 12.0 101 40-151 45-149 (440)
74 2z81_A CD282 antigen, TOLL-lik 99.4 1.3E-12 4.6E-17 110.0 8.3 131 37-179 3-151 (549)
75 3o6n_A APL1; leucine-rich repe 99.4 6.2E-12 2.1E-16 102.0 11.8 94 50-153 86-180 (390)
76 2xot_A Amphoterin-induced prot 99.4 2.7E-12 9.4E-17 103.5 9.6 95 50-153 56-151 (361)
77 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 3.6E-12 1.2E-16 108.2 10.7 95 52-158 71-166 (562)
78 2z63_A TOLL-like receptor 4, v 99.3 4.3E-12 1.5E-16 107.1 10.7 119 53-179 392-521 (570)
79 2o6r_A Variable lymphocyte rec 99.3 9.3E-12 3.2E-16 90.4 10.8 95 50-153 45-139 (177)
80 3zyj_A Leucine-rich repeat-con 99.3 7.7E-12 2.6E-16 103.1 11.5 78 50-131 81-158 (440)
81 2xwt_C Thyrotropin receptor; s 99.3 4.6E-12 1.6E-16 96.2 9.3 85 58-151 32-118 (239)
82 2ell_A Acidic leucine-rich nuc 99.3 2.3E-12 7.7E-17 92.8 7.1 112 56-179 23-150 (168)
83 1wwl_A Monocyte differentiatio 99.3 1.6E-12 5.5E-17 102.7 6.0 38 85-122 149-186 (312)
84 1dce_A Protein (RAB geranylger 99.3 5E-12 1.7E-16 107.9 8.9 89 53-153 459-548 (567)
85 3oja_A Leucine-rich immune mol 99.3 8.6E-12 3E-16 104.5 9.4 112 56-179 119-240 (487)
86 1wwl_A Monocyte differentiatio 99.3 1.4E-12 4.9E-17 103.0 4.4 88 55-152 93-187 (312)
87 3zyi_A Leucine-rich repeat-con 99.3 1.4E-11 4.8E-16 101.9 10.5 102 40-152 56-161 (452)
88 1ziw_A TOLL-like receptor 3; i 99.3 8.1E-12 2.8E-16 107.9 9.3 120 50-178 66-197 (680)
89 1dce_A Protein (RAB geranylger 99.3 9.4E-12 3.2E-16 106.2 9.3 96 58-167 442-548 (567)
90 3oja_B Anopheles plasmodium-re 99.3 1.7E-11 5.7E-16 105.0 10.4 102 51-161 93-194 (597)
91 2z80_A TOLL-like receptor 2, v 99.3 1.1E-11 3.9E-16 99.2 8.2 133 35-179 27-177 (353)
92 1a9n_A U2A', U2A'; complex (nu 99.3 1.1E-11 3.9E-16 90.0 7.5 87 53-151 37-126 (176)
93 4glp_A Monocyte differentiatio 99.3 1.2E-11 4.1E-16 97.5 7.8 96 51-151 163-264 (310)
94 4glp_A Monocyte differentiatio 99.3 7E-12 2.4E-16 98.9 6.3 70 54-123 114-183 (310)
95 3g39_A Variable lymphocyte rec 99.2 5.5E-11 1.9E-15 86.1 9.8 92 58-161 10-104 (170)
96 2ft3_A Biglycan; proteoglycan, 99.2 1E-10 3.5E-15 92.9 12.0 89 50-150 71-159 (332)
97 1xku_A Decorin; proteoglycan, 99.2 9E-11 3.1E-15 93.1 11.4 48 51-103 70-117 (330)
98 1h6t_A Internalin B; cell adhe 99.2 1E-10 3.5E-15 91.6 11.5 85 53-152 86-170 (291)
99 3oja_A Leucine-rich immune mol 99.2 1.5E-11 5.3E-16 103.0 7.1 115 57-179 34-172 (487)
100 1h6u_A Internalin H; cell adhe 99.2 1.1E-10 3.8E-15 92.1 11.3 84 53-151 81-164 (308)
101 2r9u_A Variable lymphocyte rec 99.2 9E-11 3.1E-15 85.4 9.9 91 59-161 14-107 (174)
102 1a9n_A U2A', U2A'; complex (nu 99.2 3.9E-11 1.3E-15 87.1 7.6 113 52-179 14-143 (176)
103 3o53_A Protein LRIM1, AGAP0063 99.2 3.7E-11 1.3E-15 95.1 7.9 91 81-179 140-240 (317)
104 1h6t_A Internalin B; cell adhe 99.2 1.4E-10 4.9E-15 90.8 11.0 95 52-161 63-158 (291)
105 1h6u_A Internalin H; cell adhe 99.2 1.8E-10 6E-15 90.9 10.8 113 50-179 100-220 (308)
106 1xeu_A Internalin C; cellular 99.2 2.1E-10 7.2E-15 88.6 11.0 59 85-152 106-164 (263)
107 1xeu_A Internalin C; cellular 99.2 1.1E-10 3.7E-15 90.3 9.2 110 52-179 58-175 (263)
108 3o53_A Protein LRIM1, AGAP0063 99.2 2.4E-11 8.1E-16 96.2 5.4 63 55-123 32-94 (317)
109 1o6v_A Internalin A; bacterial 99.1 2.3E-10 8E-15 94.9 10.9 63 81-152 283-345 (466)
110 3bz5_A Internalin-J, INLJ; leu 99.1 3.2E-10 1.1E-14 94.3 11.3 92 52-161 59-150 (457)
111 2xwt_C Thyrotropin receptor; s 99.1 8.2E-11 2.8E-15 89.3 7.0 91 50-151 48-144 (239)
112 1m9s_A Internalin B; cell inva 99.1 2.8E-10 9.7E-15 97.8 10.8 110 53-179 83-200 (605)
113 3bz5_A Internalin-J, INLJ; leu 99.1 1.5E-10 5.2E-15 96.2 8.9 108 51-178 36-150 (457)
114 3cvr_A Invasion plasmid antige 99.1 1.4E-10 4.9E-15 99.0 8.1 102 22-152 33-154 (571)
115 1m9s_A Internalin B; cell inva 99.1 6.6E-10 2.3E-14 95.5 11.3 86 52-152 104-189 (605)
116 4ay9_X Follicle-stimulating ho 99.1 3.3E-10 1.1E-14 90.8 8.7 103 38-151 9-117 (350)
117 2ifg_A High affinity nerve gro 99.1 4.5E-10 1.6E-14 89.6 9.0 83 60-153 11-95 (347)
118 2ast_B S-phase kinase-associat 99.1 2.6E-11 9.1E-16 96.0 1.5 90 53-151 89-182 (336)
119 1ds9_A Outer arm dynein; leuci 99.1 7.3E-13 2.5E-17 98.1 -7.1 96 52-161 43-142 (198)
120 1o6v_A Internalin A; bacterial 99.0 1.3E-09 4.4E-14 90.4 11.2 94 53-161 239-333 (466)
121 4fmz_A Internalin; leucine ric 99.0 1.2E-09 4.3E-14 86.8 10.6 110 53-179 217-336 (347)
122 1jl5_A Outer protein YOPM; leu 99.0 1.3E-09 4.5E-14 90.5 10.1 79 57-152 131-209 (454)
123 4fmz_A Internalin; leucine ric 99.0 4.8E-10 1.6E-14 89.2 6.6 96 53-161 239-335 (347)
124 2ast_B S-phase kinase-associat 99.0 1.6E-10 5.6E-15 91.4 3.2 113 57-179 70-198 (336)
125 1ds9_A Outer arm dynein; leuci 99.0 7.4E-12 2.5E-16 92.6 -4.8 117 54-179 15-143 (198)
126 2ca6_A RAN GTPase-activating p 98.9 1E-10 3.5E-15 94.7 0.3 15 56-70 93-107 (386)
127 1jl5_A Outer protein YOPM; leu 98.9 2.5E-09 8.5E-14 88.8 7.1 54 86-152 318-371 (454)
128 3rw6_A Nuclear RNA export fact 98.9 1.7E-10 5.7E-15 89.7 -0.5 80 82-166 167-258 (267)
129 2ca6_A RAN GTPase-activating p 98.9 8.8E-10 3E-14 89.2 3.5 91 53-152 183-288 (386)
130 4ay9_X Follicle-stimulating ho 98.8 7.8E-09 2.7E-13 82.8 7.5 74 50-126 47-121 (350)
131 3cvr_A Invasion plasmid antige 98.8 4.7E-09 1.6E-13 89.6 5.6 104 56-175 139-253 (571)
132 3g06_A SSPH2 (leucine-rich rep 98.8 9.6E-09 3.3E-13 88.6 7.6 84 57-158 221-304 (622)
133 3goz_A Leucine-rich repeat-con 98.8 9E-10 3.1E-14 88.6 0.9 94 53-151 46-151 (362)
134 3g06_A SSPH2 (leucine-rich rep 98.8 4E-08 1.4E-12 84.7 10.5 39 139-179 242-287 (622)
135 3goz_A Leucine-rich repeat-con 98.7 9.1E-09 3.1E-13 82.7 3.2 98 55-153 20-124 (362)
136 1z7x_W Ribonuclease inhibitor; 98.6 1.8E-09 6.1E-14 88.9 -2.0 13 139-151 342-354 (461)
137 3rw6_A Nuclear RNA export fact 98.6 3.7E-08 1.3E-12 76.5 4.7 79 55-144 168-257 (267)
138 1z7x_W Ribonuclease inhibitor; 98.6 4.7E-09 1.6E-13 86.4 -0.9 71 53-123 280-355 (461)
139 3ogk_B Coronatine-insensitive 98.2 7.2E-07 2.5E-11 75.5 4.3 82 55-146 162-251 (592)
140 3un9_A NLR family member X1; l 98.2 4.7E-07 1.6E-11 73.3 2.4 65 82-151 180-252 (372)
141 3sb4_A Hypothetical leucine ri 98.2 4.1E-06 1.4E-10 66.2 7.8 85 56-151 225-310 (329)
142 3ogk_B Coronatine-insensitive 98.2 3.7E-07 1.3E-11 77.3 1.6 90 55-153 434-528 (592)
143 3un9_A NLR family member X1; l 98.0 1.1E-06 3.8E-11 71.1 1.2 92 56-152 125-225 (372)
144 1io0_A Tropomodulin; LRR prote 98.0 2.4E-06 8.2E-11 62.4 2.8 96 53-153 32-138 (185)
145 2p1m_B Transport inhibitor res 97.9 1.1E-06 3.7E-11 74.3 -0.4 90 55-149 103-195 (594)
146 1io0_A Tropomodulin; LRR prote 97.9 2.4E-06 8.1E-11 62.4 1.0 96 53-153 61-166 (185)
147 3sb4_A Hypothetical leucine ri 97.9 8.8E-05 3E-09 58.5 10.2 87 84-179 225-324 (329)
148 2p1m_B Transport inhibitor res 97.8 3.2E-06 1.1E-10 71.5 -0.0 63 84-151 455-519 (594)
149 3e4g_A ATP synthase subunit S, 97.3 0.00013 4.5E-09 52.9 3.3 86 57-151 61-153 (176)
150 2ra8_A Uncharacterized protein 97.3 0.00012 4.3E-09 58.9 3.2 15 56-70 192-206 (362)
151 3rfe_A Platelet glycoprotein I 97.1 0.0017 5.7E-08 44.5 6.5 56 61-122 12-68 (130)
152 4fdw_A Leucine rich hypothetic 96.8 0.01 3.5E-07 48.2 10.2 63 50-118 173-235 (401)
153 3rfe_A Platelet glycoprotein I 96.7 0.0034 1.2E-07 42.9 5.9 57 88-151 11-68 (130)
154 2ra8_A Uncharacterized protein 96.4 0.00059 2E-08 54.9 0.2 91 55-154 217-323 (362)
155 4fdw_A Leucine rich hypothetic 96.3 0.015 5.2E-07 47.2 8.4 63 51-117 265-331 (401)
156 3e4g_A ATP synthase subunit S, 95.8 0.0062 2.1E-07 44.0 3.1 76 85-161 61-141 (176)
157 4gt6_A Cell surface protein; l 95.3 0.076 2.6E-06 42.5 8.3 60 51-117 259-319 (394)
158 1pgv_A TMD-1, tropomodulin TMD 94.8 0.0084 2.9E-07 44.1 1.2 91 56-148 40-136 (197)
159 4h09_A Hypothetical leucine ri 94.4 0.33 1.1E-05 38.3 9.9 83 53-147 236-319 (379)
160 4fs7_A Uncharacterized protein 93.1 0.35 1.2E-05 38.6 7.9 95 51-161 270-368 (394)
161 4gt6_A Cell surface protein; l 93.0 0.29 1E-05 39.1 7.2 102 50-164 281-383 (394)
162 4h09_A Hypothetical leucine ri 92.0 0.57 1.9E-05 37.0 7.7 86 50-147 256-342 (379)
163 4fs7_A Uncharacterized protein 91.2 0.75 2.6E-05 36.6 7.6 13 105-117 293-305 (394)
164 1pgv_A TMD-1, tropomodulin TMD 90.8 0.21 7.1E-06 36.6 3.6 72 81-153 37-113 (197)
165 3ox7_P MH027; urokinase-type p 32.4 15 0.00052 16.2 0.7 10 35-44 5-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=5.8e-26 Score=180.62 Aligned_cols=137 Identities=26% Similarity=0.434 Sum_probs=109.9
Q ss_pred CcHHHHHHHHHHHHhC-CCCCCCCCCcCCCCCCCCCCCcc--ccceEEcCC----C-----------------CCCccCC
Q 039460 1 CLEQERSALIQLKHFF-NDNQRLQNWADAANDENYSNCCQ--WEAVEKATY----E-----------------CSLFTPF 56 (182)
Q Consensus 1 c~~~~~~al~~~~~~~-~~~~~l~~W~~~~~~~~~~~~c~--w~gv~c~~~----~-----------------~~~~~~l 56 (182)
|.++|++||++||+++ +|. .+.+|..+ .+||. |.||+|... . |..+..+
T Consensus 3 c~~~~~~aL~~~k~~~~~~~-~l~~W~~~------~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l 75 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPT-TLSSWLPT------TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANL 75 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCG-GGTTCCTT------SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGC
T ss_pred CCHHHHHHHHHHHHhcCCcc-cccCCCCC------CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCC
Confidence 8999999999999999 665 78999875 68998 999999742 1 3456778
Q ss_pred CCCCEEECcC-CccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460 57 QQLESLDLIG-NNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL 135 (182)
Q Consensus 57 ~~L~~L~Ls~-n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l 135 (182)
++|++|++++ |.+.+.+|. .+..+++|++|++++|.+++.+|..|..+++|++|++++|.+++.+|..+..++
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~----~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-- 149 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPP----AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-- 149 (313)
T ss_dssp TTCSEEEEEEETTEESCCCG----GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT--
T ss_pred CCCCeeeCCCCCcccccCCh----hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC--
Confidence 8888888884 888887876 577888888888888888878888888888888888888888878888777777
Q ss_pred CCCCCCcEEecCcccCcc
Q 039460 136 DENGLPFLEQTANRLSLE 153 (182)
Q Consensus 136 ~~~~L~~l~l~~N~~~~~ 153 (182)
+|++|++++|.+++.
T Consensus 150 ---~L~~L~L~~N~l~~~ 164 (313)
T 1ogq_A 150 ---NLVGITFDGNRISGA 164 (313)
T ss_dssp ---TCCEEECCSSCCEEE
T ss_pred ---CCCeEECcCCcccCc
Confidence 677777777777644
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=4e-23 Score=181.72 Aligned_cols=169 Identities=28% Similarity=0.332 Sum_probs=117.1
Q ss_pred cHHHHHHHHHHHHhC-CCCCCCCCCcCCCCCCCCCCCccccceEEcCCC-------------------------------
Q 039460 2 LEQERSALIQLKHFF-NDNQRLQNWADAANDENYSNCCQWEAVEKATYE------------------------------- 49 (182)
Q Consensus 2 ~~~~~~al~~~~~~~-~~~~~l~~W~~~~~~~~~~~~c~w~gv~c~~~~------------------------------- 49 (182)
.++|++||++||+++ +|. .+++|..+ .+||.|.||+|+...
T Consensus 10 ~~~~~~all~~k~~~~~~~-~l~~W~~~------~~~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 10 LYREIHQLISFKDVLPDKN-LLPDWSSN------KNPCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp HHHHHHHHHHHHTTCSCTT-SSTTCCTT------SCGGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEE
T ss_pred CHHHHHHHHHHHhhCCCcc-cccCCCCC------CCCcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCccccc
Confidence 468999999999999 887 89999865 689999999996321
Q ss_pred ----------CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhc-cCCCCCCEEEccc
Q 039460 50 ----------CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSL-GGLSSLRCLSLRS 118 (182)
Q Consensus 50 ----------~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~-~~l~~L~~L~L~~ 118 (182)
+..+..+++|++|+|++|.++|.+|.. ..+..+++|++|++++|.+.+.+|..+ ..+++|++|++++
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTL--TSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGG--GGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred CCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCCh--HHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 146677888888888888888877751 136777888888888888877777655 6777777777777
Q ss_pred cccccccccc---ccccCcC-----------------CCCCCCcEEecCcccCccc--ccccccC-------CCCccCcC
Q 039460 119 NRLNGSVVIK---VFWFDIL-----------------DENGLPFLEQTANRLSLES--IDCIQDL-------IYLGGNLP 169 (182)
Q Consensus 119 N~l~g~~p~~---~~~l~~l-----------------~~~~L~~l~l~~N~~~~~~--~~~l~~L-------~~l~g~ip 169 (182)
|.+++..|.. +..++.| ...+|++|++++|.+++.. +..+++| +.+++.+|
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHH
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCccc
Confidence 7777666554 3333311 1235666666666665431 3333333 55566666
Q ss_pred hhcccccCCC
Q 039460 170 RKTLQQTKIS 179 (182)
Q Consensus 170 ~~l~~l~~L~ 179 (182)
..++.+++|+
T Consensus 241 ~~l~~l~~L~ 250 (768)
T 3rgz_A 241 RAISTCTELK 250 (768)
T ss_dssp HHTTTCSSCC
T ss_pred HHHhcCCCCC
Confidence 6676666664
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=4.7e-22 Score=171.76 Aligned_cols=160 Identities=16% Similarity=0.175 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHhC-CC-CCC-------CCCCcCCCCCCCCCCCccc---cceEEcCCC----------------CCCcc
Q 039460 3 EQERSALIQLKHFF-ND-NQR-------LQNWADAANDENYSNCCQW---EAVEKATYE----------------CSLFT 54 (182)
Q Consensus 3 ~~~~~al~~~~~~~-~~-~~~-------l~~W~~~~~~~~~~~~c~w---~gv~c~~~~----------------~~~~~ 54 (182)
..|++||.+||+++ ++ +.. ..+|+.+ .++|.| .||+|+..+ |+.++
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~------~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~ 102 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN------KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIG 102 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCS------SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGG
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC------CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHh
Confidence 36999999999998 33 332 2379876 789999 999997542 77899
Q ss_pred CCCCCCEEECcCCc------------------------------------------------------------------
Q 039460 55 PFQQLESLDLIGNN------------------------------------------------------------------ 68 (182)
Q Consensus 55 ~l~~L~~L~Ls~n~------------------------------------------------------------------ 68 (182)
.|++|++|+|++|.
T Consensus 103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 182 (636)
T 4eco_A 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182 (636)
T ss_dssp GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCC
T ss_pred cCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccc
Confidence 99999999999884
Q ss_pred ------------cccccCcccccccCCCCCCcEEEccCCcCCcc-----------------cchhcc--CCCCCCEEEcc
Q 039460 69 ------------IVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS-----------------IFSSLG--GLSSLRCLSLR 117 (182)
Q Consensus 69 ------------l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~-----------------~p~~~~--~l~~L~~L~L~ 117 (182)
++| +|. .+..+++|++|+|++|.++|. +|..++ .+++|++|+++
T Consensus 183 l~~l~l~~~~n~l~~-ip~----~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~ 257 (636)
T 4eco_A 183 LKDTQIGQLSNNITF-VSK----AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY 257 (636)
T ss_dssp CCTTTTTCCSCEEEE-ECG----GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE
T ss_pred hhhhhhccccCCCcc-CCH----HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec
Confidence 445 776 588999999999999999986 999998 99999999999
Q ss_pred cccccccccccccccCcCCCCCCCcEEecCcc-cCc-c---ccccc------ccC-------CCCccCcCh--hcccccC
Q 039460 118 SNRLNGSVVIKVFWFDILDENGLPFLEQTANR-LSL-E---SIDCI------QDL-------IYLGGNLPR--KTLQQTK 177 (182)
Q Consensus 118 ~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~-~~~-~---~~~~l------~~L-------~~l~g~ip~--~l~~l~~ 177 (182)
+|.+.|.+|..++.++ +|++|++++|. +++ . .+..+ ++| |.++ .+|. .++.+++
T Consensus 258 ~n~l~~~~p~~l~~l~-----~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~ 331 (636)
T 4eco_A 258 NCPNLTKLPTFLKALP-----EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK 331 (636)
T ss_dssp CCTTCSSCCTTTTTCS-----SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT
T ss_pred CCcCCccChHHHhcCC-----CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCC
Confidence 9999999999999988 89999999998 887 3 23322 444 5666 6888 7888877
Q ss_pred CC
Q 039460 178 IS 179 (182)
Q Consensus 178 L~ 179 (182)
|+
T Consensus 332 L~ 333 (636)
T 4eco_A 332 LG 333 (636)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=2.1e-21 Score=172.71 Aligned_cols=161 Identities=16% Similarity=0.210 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHhC-CCCCCCCCCcCCCCCCCCCCC--ccc------------cceEEcCCC----------------CC
Q 039460 3 EQERSALIQLKHFF-NDNQRLQNWADAANDENYSNC--CQW------------EAVEKATYE----------------CS 51 (182)
Q Consensus 3 ~~~~~al~~~~~~~-~~~~~l~~W~~~~~~~~~~~~--c~w------------~gv~c~~~~----------------~~ 51 (182)
.+|+.||++||+++ +| +|..+... ...+| |.| .||+|+..+ |+
T Consensus 268 ~~d~~ALl~~k~~l~~~-----~W~~~~~~-~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~ 341 (876)
T 4ecn_A 268 IKDYKALKAIWEALDGK-----NWRYYSGT-INNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD 341 (876)
T ss_dssp HHHHHHHHHHHHHTTGG-----GCCCCCSS-CSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG
T ss_pred hHHHHHHHHHHHHcCCC-----CCCcCCCc-ccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch
Confidence 57999999999999 54 67664100 01245 999 999997421 78
Q ss_pred CccCCCCCCEEEC-cCCccccc----------------------------------------------------------
Q 039460 52 LFTPFQQLESLDL-IGNNIVGC---------------------------------------------------------- 72 (182)
Q Consensus 52 ~~~~l~~L~~L~L-s~n~l~g~---------------------------------------------------------- 72 (182)
.++.|++|++|+| ++|.+.|.
T Consensus 342 ~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~ 421 (876)
T 4ecn_A 342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS 421 (876)
T ss_dssp GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence 8999999999999 88877665
Q ss_pred ------------------cCcccccccCCCCCCcEEEccCCcCCc-----------------ccchhcc--CCCCCCEEE
Q 039460 73 ------------------VENEGLGRLSRLSNLKFLRLDFNSFNN-----------------SIFSSLG--GLSSLRCLS 115 (182)
Q Consensus 73 ------------------~p~~~~~~~~~l~~L~~L~L~~n~l~g-----------------~~p~~~~--~l~~L~~L~ 115 (182)
+|. .+..+++|++|+|++|.++| .+|..++ .+++|++|+
T Consensus 422 ~l~l~~l~l~~~~N~L~~IP~----~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 422 RISLKDTQIGNLTNRITFISK----AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCTTTTTCCSCEEEEECG----GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred ccchhhceeccccCcccchhH----HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 555 58899999999999999998 4999988 999999999
Q ss_pred cccccccccccccccccCcCCCCCCCcEEecCcc-cCc-c---cccccc-------cC-------CCCccCcCh--hccc
Q 039460 116 LRSNRLNGSVVIKVFWFDILDENGLPFLEQTANR-LSL-E---SIDCIQ-------DL-------IYLGGNLPR--KTLQ 174 (182)
Q Consensus 116 L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~-~~~-~---~~~~l~-------~L-------~~l~g~ip~--~l~~ 174 (182)
|++|.+.|.+|..++.++ +|++|++++|+ +++ . .+..+. +| |.++ .||. .+++
T Consensus 498 Ls~N~l~~~iP~~l~~L~-----~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~ 571 (876)
T 4ecn_A 498 LYNCPNMTQLPDFLYDLP-----ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK 571 (876)
T ss_dssp EESCTTCCSCCGGGGGCS-----SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTT
T ss_pred CcCCCCCccChHHHhCCC-----CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhc
Confidence 999999999999999998 89999999998 887 3 233322 44 5666 6888 7888
Q ss_pred ccCCC
Q 039460 175 QTKIS 179 (182)
Q Consensus 175 l~~L~ 179 (182)
+++|+
T Consensus 572 L~~L~ 576 (876)
T 4ecn_A 572 MVKLG 576 (876)
T ss_dssp CTTCC
T ss_pred CCCCC
Confidence 88775
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=1.4e-21 Score=156.35 Aligned_cols=122 Identities=16% Similarity=0.197 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHHHhC--CCCCCCCCCcCCCCCCCCCCCccccceEEcC----------CC--------------CCCccC
Q 039460 2 LEQERSALIQLKHFF--NDNQRLQNWADAANDENYSNCCQWEAVEKAT----------YE--------------CSLFTP 55 (182)
Q Consensus 2 ~~~~~~al~~~~~~~--~~~~~l~~W~~~~~~~~~~~~c~w~gv~c~~----------~~--------------~~~~~~ 55 (182)
..+|+.||++||.++ ++.+.+..|..+ .....++|.|.||.|.. .. |..+..
T Consensus 25 ~~~~~~aLl~~k~~~~~~~~~~~~~w~~~--~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~~lp~~l~~ 102 (328)
T 4fcg_A 25 LRPYHDVLSQWQRHYNADRNRWHSAWRQA--NSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFR 102 (328)
T ss_dssp CCCHHHHHHHHHHHHHHCCTTHHHHHHHH--TTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCSSCCSCGGG
T ss_pred CchHHHHHHHHHHhccCCchhhhhhhccc--ccccccccccCCcchhhhHHHHhcccccceeEEEccCCCchhcChhhhh
Confidence 356899999999988 666667889521 01136899999999942 10 566777
Q ss_pred CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
+++|++|++++|.++ .+|. .+..+++|++|++++|.+. .+|..++.+++|++|++++|++.+.+|..++.
T Consensus 103 l~~L~~L~L~~n~l~-~lp~----~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-ELPD----TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp GTTCSEEEEESSCCC-CCCS----CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred CCCCCEEECCCCCcc-chhH----HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 889999999999998 6887 5888889999999999888 78888888888888888888888888877654
No 6
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=1.4e-16 Score=121.16 Aligned_cols=133 Identities=20% Similarity=0.144 Sum_probs=86.0
Q ss_pred CCCccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCC
Q 039460 35 SNCCQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110 (182)
Q Consensus 35 ~~~c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~ 110 (182)
...|+|.+|.|.... |..+ .++|++|++++|.+++..|. .|..+++|++|+|++|.+....+..|..+++
T Consensus 16 ~~~Cs~~~v~c~~~~l~~ip~~~--~~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~ 89 (229)
T 3e6j_A 16 QCSCSGTTVDCRSKRHASVPAGI--PTNAQILYLHDNQITKLEPG----VFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89 (229)
T ss_dssp TCEEETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCEEeCCEeEccCCCcCccCCCC--CCCCCEEEcCCCccCccCHH----HhhCccCCcEEECCCCCCCCcChhhcccCCC
Confidence 479999999998653 3222 26777788888887775554 5777777777777777776433345677777
Q ss_pred CCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCcc--cccccccC-------CCCccCcC-hhcccccCCC
Q 039460 111 LRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE--SIDCIQDL-------IYLGGNLP-RKTLQQTKIS 179 (182)
Q Consensus 111 L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~--~~~~l~~L-------~~l~g~ip-~~l~~l~~L~ 179 (182)
|++|+|++|++++..+..+..++ +|++|++++|.++.- .+..+.+| |.+++ +| ..|..+++|+
T Consensus 90 L~~L~Ls~N~l~~l~~~~~~~l~-----~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 90 LTVLDLGTNQLTVLPSAVFDRLV-----HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSSLT 162 (229)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred cCEEECCCCcCCccChhHhCcch-----hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCc-cCHHHHhCCCCCC
Confidence 77777777777754444455666 777777777777621 23334444 45554 34 3355555554
No 7
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.69 E-value=1.9e-16 Score=118.28 Aligned_cols=106 Identities=24% Similarity=0.273 Sum_probs=53.4
Q ss_pred CccccceEEcCCC--------------------------CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEE
Q 039460 37 CCQWEAVEKATYE--------------------------CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFL 90 (182)
Q Consensus 37 ~c~w~gv~c~~~~--------------------------~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L 90 (182)
.|.|.+|.|...+ +..+..+++|++|++++|.+++ +|.. .+..+++|++|
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~---~~~~l~~L~~L 81 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNG---VFNKLTSLTYL 81 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTT---TTTTCTTCCEE
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCc-cChh---hcCCCCCcCEE
Confidence 3789999997542 1224445555555555555553 2221 34455555555
Q ss_pred EccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460 91 RLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 91 ~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
++++|.+++..+..|..+++|++|++++|++++..+..+..++ +|++|++++|.++
T Consensus 82 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 82 NLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT-----QLKDLRLYQNQLK 137 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCS
T ss_pred ECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCC-----cCCEEECCCCccc
Confidence 5555555533333345555555555555555533333333343 4444444444444
No 8
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.66 E-value=5.8e-16 Score=118.94 Aligned_cols=119 Identities=20% Similarity=0.131 Sum_probs=76.8
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
.+..+++|++|++++|.+++..|. .+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..+..
T Consensus 54 ~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 129 (251)
T 3m19_A 54 TFRGLTKLTWLNLDYNQLQTLSAG----VFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR 129 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred HhcCcccCCEEECCCCcCCccCHh----HhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc
Confidence 456667777777777777764443 4667777777777777777555556677777777777777777444444555
Q ss_pred cCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcccccCCC
Q 039460 132 FDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
++ +|++|++++|.++.. .+..+++| |.+++..|..+..+++|+
T Consensus 130 l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 182 (251)
T 3m19_A 130 LT-----KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182 (251)
T ss_dssp CT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CC-----cccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 65 777888888877743 24444444 555653344566666554
No 9
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.66 E-value=1.8e-15 Score=114.30 Aligned_cols=131 Identities=18% Similarity=0.132 Sum_probs=89.5
Q ss_pred ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCE
Q 039460 38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC 113 (182)
Q Consensus 38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 113 (182)
|.|..|.|...+ |..+. +.+++|++++|.+++..+. .|..+++|++|+|++|.+++..|..|..+++|++
T Consensus 11 C~~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~----~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~ 84 (220)
T 2v9t_B 11 CSNNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPG----AFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS 84 (220)
T ss_dssp EETTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTT----SSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred ECCCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHh----HhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence 689999998654 33232 5788888888888764443 5777888888888888888666778888888888
Q ss_pred EEcccccccccccccccccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcccccCCC
Q 039460 114 LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 114 L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
|+|++|.+++..+..+..++ +|++|++++|.+++. .+..+++| |.+++..+..|..+++|+
T Consensus 85 L~Ls~N~l~~l~~~~f~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 155 (220)
T 2v9t_B 85 LVLYGNKITELPKSLFEGLF-----SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred EECCCCcCCccCHhHccCCC-----CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCC
Confidence 88888888743333345566 788888888887754 34444444 555553334466666654
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.66 E-value=3e-16 Score=138.00 Aligned_cols=69 Identities=33% Similarity=0.524 Sum_probs=26.8
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSV 125 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~ 125 (182)
+..+++|++|++++|.++|.+|. .+..+++|++|++++|.+.|.+|..++.+++|++|++++|.++|.+
T Consensus 486 l~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGEIPK----WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBC
T ss_pred HhcCCCCCEEEccCCccCCcCCh----HHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcC
Confidence 33344444444444444433333 2333333333333333333333333333333333333333333333
No 11
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.64 E-value=2.1e-15 Score=117.02 Aligned_cols=91 Identities=22% Similarity=0.200 Sum_probs=48.0
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
.|..+++|++|++++|.++. +|.. .|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~-i~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 131 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQT-LPAG---IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSC-CCTT---TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred HhcCCCCCCEEECCCCccCe-eChh---hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc
Confidence 44555666666666666653 3331 3455566666666666655333334455555666666666555444444444
Q ss_pred cCcCCCCCCCcEEecCcccC
Q 039460 132 FDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~ 151 (182)
++ +|++|++++|.++
T Consensus 132 l~-----~L~~L~Ls~n~l~ 146 (270)
T 2o6q_A 132 LT-----KLTYLSLGYNELQ 146 (270)
T ss_dssp CT-----TCCEEECCSSCCC
T ss_pred Cc-----CCCEEECCCCcCC
Confidence 44 4555555555444
No 12
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.63 E-value=3.1e-15 Score=113.04 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=77.4
Q ss_pred ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCE
Q 039460 38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC 113 (182)
Q Consensus 38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 113 (182)
|.|..+.|.... |..+ ...+++|++++|.+++..|.. .|..+++|++|+|++|.+++..+..|..+++|++
T Consensus 11 C~~~~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~---~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~ 85 (220)
T 2v70_A 11 CEGTTVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATG---IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNE 85 (220)
T ss_dssp EETTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCC---CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ECCCEeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchh---hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence 679999997643 2222 134566677777666543431 3556666666666666666544456666666666
Q ss_pred EEcccccccccccccccccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcccccCCC
Q 039460 114 LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 114 L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
|+|++|.+++..|..+..++ +|++|++++|.+++. .+..+.+| |.+++..|..|..+++|+
T Consensus 86 L~Ls~N~l~~~~~~~~~~l~-----~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 156 (220)
T 2v70_A 86 ILLTSNRLENVQHKMFKGLE-----SLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156 (220)
T ss_dssp EECCSSCCCCCCGGGGTTCS-----SCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCC
T ss_pred EECCCCccCccCHhHhcCCc-----CCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCC
Confidence 66666666655555555555 666666666666633 23333333 455554455566555554
No 13
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=2.2e-15 Score=111.55 Aligned_cols=92 Identities=22% Similarity=0.271 Sum_probs=63.4
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF 132 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 132 (182)
+..+++|++|++++|.+++..|. .|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..|..+..+
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 125 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGIEPN----AFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC
T ss_pred cccCCCCCEEECCCCCCCCcCHh----HcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC
Confidence 56667777777777777765554 46677777777777777776555566677777777777777776666666666
Q ss_pred CcCCCCCCCcEEecCcccCcc
Q 039460 133 DILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 133 ~~l~~~~L~~l~l~~N~~~~~ 153 (182)
+ +|+++++++|.+++.
T Consensus 126 ~-----~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 126 N-----SLTSLNLASNPFNCN 141 (192)
T ss_dssp T-----TCCEEECTTCCBCCS
T ss_pred C-----CCCEEEeCCCCccCc
Confidence 6 677777777777644
No 14
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.60 E-value=2.4e-15 Score=119.27 Aligned_cols=125 Identities=22% Similarity=0.326 Sum_probs=90.6
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCC-CCCEEEccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLS-SLRCLSLRSNRLNGSVVIK 128 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~-~L~~L~L~~N~l~g~~p~~ 128 (182)
|..+..+++|++|++++|.+++.+|. .+..+++|++|++++|.+++.+|..++.++ +|++|++++|.++|.+|..
T Consensus 118 p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~ 193 (313)
T 1ogq_A 118 PDFLSQIKTLVTLDFSYNALSGTLPP----SISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193 (313)
T ss_dssp CGGGGGCTTCCEEECCSSEEESCCCG----GGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG
T ss_pred CHHHhCCCCCCEEeCCCCccCCcCCh----HHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH
Confidence 56778888888888888888887877 578888888888888888888888888887 8888888888888777766
Q ss_pred ccccCcC-------------------CCCCCCcEEecCcccCcc--cccccccC-------CCCccCcChhcccccCCC
Q 039460 129 VFWFDIL-------------------DENGLPFLEQTANRLSLE--SIDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 129 ~~~l~~l-------------------~~~~L~~l~l~~N~~~~~--~~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
+..+. | ...+|++|++++|.+++. .+..+++| |.+++.+|..++.+++|+
T Consensus 194 ~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 271 (313)
T 1ogq_A 194 FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271 (313)
T ss_dssp GGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCC
T ss_pred HhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCC
Confidence 65543 1 123667777777776643 22333333 666777887777777665
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.60 E-value=2.9e-15 Score=126.37 Aligned_cols=89 Identities=24% Similarity=0.174 Sum_probs=42.0
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc-ccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG-SVVIKVF 130 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~ 130 (182)
.|..+++|++|++++|.+++..|. .|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++ .+|..++
T Consensus 45 ~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 120 (549)
T 2z81_A 45 DLRACANLQVLILKSSRINTIEGD----AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFP 120 (549)
T ss_dssp TTSSCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCT
T ss_pred hhhcCCcccEEECCCCCcCccChh----hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhh
Confidence 344444444445544444443332 34445555555555555544333344555555555555555543 2334444
Q ss_pred ccCcCCCCCCCcEEecCcc
Q 039460 131 WFDILDENGLPFLEQTANR 149 (182)
Q Consensus 131 ~l~~l~~~~L~~l~l~~N~ 149 (182)
.++ +|++|++++|.
T Consensus 121 ~l~-----~L~~L~L~~n~ 134 (549)
T 2z81_A 121 NLT-----NLQTLRIGNVE 134 (549)
T ss_dssp TCT-----TCCEEEEEESS
T ss_pred ccC-----CccEEECCCCc
Confidence 444 45555555554
No 16
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.60 E-value=4.8e-15 Score=126.20 Aligned_cols=120 Identities=15% Similarity=0.065 Sum_probs=52.5
Q ss_pred CCCCCCCcCCCCCCCCCCCcccc----ceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEE
Q 039460 19 NQRLQNWADAANDENYSNCCQWE----AVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFL 90 (182)
Q Consensus 19 ~~~l~~W~~~~~~~~~~~~c~w~----gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L 90 (182)
.+.++.|..+ -|....+|.+. .|.|...+ |..+. +.+++|||++|.|++..|. .|..+++|++|
T Consensus 10 ~~~~~~~~~~--~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~----~f~~l~~L~~L 81 (635)
T 4g8a_A 10 DDKLAAANSS--IPESWEPCVEVVPNITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSY----SFFSFPELQVL 81 (635)
T ss_dssp -----------------CCSEEEETTTEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTT----TTTTCTTCCEE
T ss_pred cchhhcccCC--CCCCCCCccccCCCCEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHH----HHhCCCCCCEE
Confidence 3445666553 11112456432 46786543 22221 2455555555555542222 45555555555
Q ss_pred EccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460 91 RLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 91 ~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
+|++|.+++..|..|..+++|++|+|++|++++..+..|..++ +|++|++++|+++
T Consensus 82 ~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~-----~L~~L~Ls~N~l~ 137 (635)
T 4g8a_A 82 DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS-----SLQKLVAVETNLA 137 (635)
T ss_dssp ECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCT-----TCCEEECTTSCCC
T ss_pred ECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCC-----CCCEEECCCCcCC
Confidence 5555555533334455555555555555555533333444444 4555555555444
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.58 E-value=5.3e-15 Score=118.08 Aligned_cols=113 Identities=20% Similarity=0.101 Sum_probs=75.1
Q ss_pred CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460 56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL 135 (182)
Q Consensus 56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l 135 (182)
+++|++|++++|.++ .+|. .+..+++|++|++++|.+. .+|..++.+++|++|++++|.+.+.+|..++.++
T Consensus 182 l~~L~~L~L~~n~l~-~lp~----~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~-- 253 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR-SLPA----SIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA-- 253 (328)
T ss_dssp STTCCEEEEEEECCC-CCCG----GGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCC--
T ss_pred CCCCCEEECcCCCcC-cchH----hhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCC--
Confidence 555555555555555 4444 4666667777777777776 4555667777777777777777777777766666
Q ss_pred CCCCCCcEEecCcccCccc---ccccccC-------CCCccCcChhcccccCCC
Q 039460 136 DENGLPFLEQTANRLSLES---IDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 136 ~~~~L~~l~l~~N~~~~~~---~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
+|++|++++|.+.+.. +..+++| |.+.+.+|++++++++|.
T Consensus 254 ---~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 254 ---PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC 304 (328)
T ss_dssp ---CCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred ---CCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence 7788888887776553 3444444 566778888888888765
No 18
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=1.2e-14 Score=105.74 Aligned_cols=105 Identities=21% Similarity=0.134 Sum_probs=89.1
Q ss_pred ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCE
Q 039460 38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC 113 (182)
Q Consensus 38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 113 (182)
|.|..|.|.... |..+ .+.|++|+|++|.+++..|. .|..+++|++|+|++|++++..+..|..+++|++
T Consensus 9 C~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 9 CSGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPG----VFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp EETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChh----hhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 689999998654 3333 37899999999999986665 6899999999999999999666667899999999
Q ss_pred EEcccccccccccccccccCcCCCCCCCcEEecCcccCcc
Q 039460 114 LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 114 L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
|+|++|++++..+..+..++ +|++|++++|.++..
T Consensus 83 L~L~~N~l~~~~~~~~~~l~-----~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLK-----SLTHIWLLNNPWDCA 117 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCBCTT
T ss_pred EECCCCccCEeCHHHhcCCC-----CCCEEEeCCCCCCCC
Confidence 99999999965555688888 999999999999844
No 19
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.57 E-value=2e-14 Score=122.65 Aligned_cols=106 Identities=18% Similarity=0.096 Sum_probs=59.0
Q ss_pred CCCccc----cceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhcc
Q 039460 35 SNCCQW----EAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLG 106 (182)
Q Consensus 35 ~~~c~w----~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~ 106 (182)
..+|.+ ..|.|...+ |..+. +++++|++++|.+++..+. .|..+++|++|++++|.+++..|..|.
T Consensus 4 ~~~c~~~~~~~~~~c~~~~l~~ip~~~~--~~l~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~i~~~~~~ 77 (606)
T 3vq2_A 4 LNPCIEVVPNITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSY----SFSNFSELQWLDLSRCEIETIEDKAWH 77 (606)
T ss_dssp --CCEEEETTTEEECTTSCCSSCCTTSC--TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred CCCceecCCCCceEccCCCcccCCCCCC--CCcCEEECCCCCcCEeChh----hccCCccCcEEeCCCCcccccCHHHhh
Confidence 356655 257776543 22222 4566666666666554433 455666666666666666544455566
Q ss_pred CCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460 107 GLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 107 ~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
.+++|++|++++|.+++..|..++.++ +|++|++++|.++
T Consensus 78 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~ 117 (606)
T 3vq2_A 78 GLHHLSNLILTGNPIQSFSPGSFSGLT-----SLENLVAVETKLA 117 (606)
T ss_dssp TCTTCCEEECTTCCCCCCCTTSSTTCT-----TCCEEECTTSCCC
T ss_pred chhhcCEeECCCCcccccChhhcCCcc-----cCCEEEccCCccc
Confidence 666666666666666655555555555 5555665555554
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.57 E-value=1.4e-15 Score=131.31 Aligned_cols=120 Identities=16% Similarity=0.174 Sum_probs=97.7
Q ss_pred CCCccCCCCCCEEECcCCccccc-----------------cCcccccccC--CCCCCcEEEccCCcCCcccchhccCCCC
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGC-----------------VENEGLGRLS--RLSNLKFLRLDFNSFNNSIFSSLGGLSS 110 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~-----------------~p~~~~~~~~--~l~~L~~L~L~~n~l~g~~p~~~~~l~~ 110 (182)
|..++.+++|++|++++|.++|. +|. .+. .+++|++|++++|.+.|.+|..|+.+++
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~----~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 274 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTE----DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPE 274 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS----CCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSS
T ss_pred CHHHhcccCCCEEECcCCccccccccccccccccchhcccCch----hhhhcccCCCCEEEecCCcCCccChHHHhcCCC
Confidence 66788999999999999999986 887 588 8999999999999999999999999999
Q ss_pred CCEEEccccc-ccc-ccccccccc------CcCCCCCCCcEEecCcccCcc----cccccccC-------CCCccCcChh
Q 039460 111 LRCLSLRSNR-LNG-SVVIKVFWF------DILDENGLPFLEQTANRLSLE----SIDCIQDL-------IYLGGNLPRK 171 (182)
Q Consensus 111 L~~L~L~~N~-l~g-~~p~~~~~l------~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L-------~~l~g~ip~~ 171 (182)
|++|++++|+ ++| .+|..++.+ + +|++|++++|.++.- .+..+++| |.+.|.+| .
T Consensus 275 L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~-----~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~ 348 (636)
T 4eco_A 275 MQLINVACNRGISGEQLKDDWQALADAPVGE-----KIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A 348 (636)
T ss_dssp CCEEECTTCTTSCHHHHHHHHHHHHHSGGGG-----TCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C
T ss_pred CCEEECcCCCCCccccchHHHHhhhccccCC-----CCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h
Confidence 9999999998 998 899888776 6 788888888887711 23444444 56666777 6
Q ss_pred cccccCCC
Q 039460 172 TLQQTKIS 179 (182)
Q Consensus 172 l~~l~~L~ 179 (182)
++.+++|+
T Consensus 349 ~~~l~~L~ 356 (636)
T 4eco_A 349 FGSEIKLA 356 (636)
T ss_dssp CEEEEEES
T ss_pred hCCCCCCC
Confidence 66665554
No 21
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.57 E-value=1.1e-15 Score=133.82 Aligned_cols=74 Identities=27% Similarity=0.222 Sum_probs=36.5
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF 132 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 132 (182)
+..++.|++|+|++|.+. .+|. .+..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.|+ .+|..++.+
T Consensus 220 ~~~l~~L~~L~Ls~n~l~-~l~~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIF-NISA----NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp --CCCCCCEEECTTSCCS-CCCG----GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred hccCCCCcEEECCCCCCC-CCCh----hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 444555566666666555 3444 2334555555555555554 44544555555555555555554 444444444
Q ss_pred C
Q 039460 133 D 133 (182)
Q Consensus 133 ~ 133 (182)
.
T Consensus 293 ~ 293 (727)
T 4b8c_D 293 F 293 (727)
T ss_dssp T
T ss_pred C
Confidence 4
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.56 E-value=1.9e-14 Score=118.67 Aligned_cols=135 Identities=21% Similarity=0.158 Sum_probs=81.7
Q ss_pred CCccccc--eEEcCCCCCCcc-CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccc-hhccCCCCC
Q 039460 36 NCCQWEA--VEKATYECSLFT-PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF-SSLGGLSSL 111 (182)
Q Consensus 36 ~~c~w~g--v~c~~~~~~~~~-~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L 111 (182)
..|.|.+ |.|...+...+. -.++|++|++++|.+++..|. .+..+++|++|++++|.+.+.++ ..|..+++|
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET----SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT----TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChh----HhccCccccEEECcCCcccceECcccccccccC
Confidence 4676666 888754311111 115677777777777765554 46777777777777777665553 356677777
Q ss_pred CEEEcccccccccccccccccCcCCCCCCCcEEecCcccCccc-----ccccccC-------CCCccCcChh-cccccCC
Q 039460 112 RCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLES-----IDCIQDL-------IYLGGNLPRK-TLQQTKI 178 (182)
Q Consensus 112 ~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~~-----~~~l~~L-------~~l~g~ip~~-l~~l~~L 178 (182)
++|+|++|.+++..|..+..++ +|++|++++|.+++.. +..+++| |.+.+..|.. ++.+++|
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 156 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLA-----NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRF 156 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCT-----TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTC
T ss_pred CEEeCCCCccCccChhhccCcc-----cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcc
Confidence 7777777777766666666666 6677777777666421 3444444 4445544544 5555555
Q ss_pred C
Q 039460 179 S 179 (182)
Q Consensus 179 ~ 179 (182)
+
T Consensus 157 ~ 157 (455)
T 3v47_A 157 H 157 (455)
T ss_dssp C
T ss_pred c
Confidence 4
No 23
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=2.7e-14 Score=103.94 Aligned_cols=108 Identities=18% Similarity=0.111 Sum_probs=75.0
Q ss_pred CccccceEEcCCCCCC--ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEE
Q 039460 37 CCQWEAVEKATYECSL--FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCL 114 (182)
Q Consensus 37 ~c~w~gv~c~~~~~~~--~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L 114 (182)
.|.|.+|.|...+... ....++|++|++++|.+++..+. .+..+++|++|++++|.+++..+..|..+++|++|
T Consensus 6 ~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG----VFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL 81 (177)
T ss_dssp EEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred EeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHH----HhcCcccccEEECCCCcceEeChhHccCCCccCEE
Confidence 3789999998653111 11236788888888888753333 46778888888888888875445556778888888
Q ss_pred EcccccccccccccccccCcCCCCCCCcEEecCcccCcc
Q 039460 115 SLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 115 ~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
++++|++++..+..+..++ +|++|++++|.+++.
T Consensus 82 ~l~~N~l~~~~~~~~~~l~-----~L~~L~l~~N~l~~~ 115 (177)
T 2o6r_A 82 YLHENKLQSLPNGVFDKLT-----QLKELALDTNQLKSV 115 (177)
T ss_dssp ECCSSCCCCCCTTTTTTCT-----TCCEEECCSSCCSCC
T ss_pred ECCCCCccccCHHHhhCCc-----ccCEEECcCCcceEe
Confidence 8888888755555556666 778888888877743
No 24
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.55 E-value=2.6e-14 Score=114.35 Aligned_cols=103 Identities=16% Similarity=0.039 Sum_probs=89.0
Q ss_pred ccccceEEcCC-C----CCCccCCCCCCEEECcC-CccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCC
Q 039460 38 CQWEAVEKATY-E----CSLFTPFQQLESLDLIG-NNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSL 111 (182)
Q Consensus 38 c~w~gv~c~~~-~----~~~~~~l~~L~~L~Ls~-n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L 111 (182)
|.|..|.|... . |. +..+++|++|+|++ |.+++..+. .|..+++|++|+|++|++++..|..|..+++|
T Consensus 8 C~~~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 82 (347)
T 2ifg_A 8 HGSSGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELR----DLRGLGELRNLTIVKSGLRFVAPDAFHFTPRL 82 (347)
T ss_dssp SSSSCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGG----GSCSCCCCSEEECCSSCCCEECTTGGGSCSCC
T ss_pred ccCCEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChh----HhccccCCCEEECCCCccceeCHHHhcCCcCC
Confidence 89999999876 4 66 88999999999996 999975544 69999999999999999998888899999999
Q ss_pred CEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460 112 RCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 112 ~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
++|+|++|+|++ +|..+.... .|+.|++.+|.+.
T Consensus 83 ~~L~l~~N~l~~-~~~~~~~~~-----~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 83 SRLNLSFNALES-LSWKTVQGL-----SLQELVLSGNPLH 116 (347)
T ss_dssp CEEECCSSCCSC-CCSTTTCSC-----CCCEEECCSSCCC
T ss_pred CEEeCCCCccce-eCHHHcccC-----CceEEEeeCCCcc
Confidence 999999999984 565544333 5999999999988
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.53 E-value=3.5e-14 Score=113.93 Aligned_cols=117 Identities=22% Similarity=0.187 Sum_probs=63.0
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccc--cc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVI--KV 129 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~--~~ 129 (182)
.+..+++|++|++++|.+++..|. .+..+++|++|++++|.+++..+..|..+++|++|++++|+++ .+|. .+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~ 145 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEED----SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLF 145 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSC
T ss_pred HhccCCCCCEEECCCCccCccCHh----hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhh
Confidence 455556666666666666554333 4566666666666666665333333566666666666666665 3443 44
Q ss_pred cccCcCCCCCCCcEEecCcc-cCcc---cccccccC-------CCCccCcChhcccccCC
Q 039460 130 FWFDILDENGLPFLEQTANR-LSLE---SIDCIQDL-------IYLGGNLPRKTLQQTKI 178 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~-~~~~---~~~~l~~L-------~~l~g~ip~~l~~l~~L 178 (182)
..++ +|++|++++|. ++.. .+..+++| |.+.+..|..++.+++|
T Consensus 146 ~~l~-----~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 200 (353)
T 2z80_A 146 SHLT-----KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200 (353)
T ss_dssp TTCT-----TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE
T ss_pred ccCC-----CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC
Confidence 4455 66666666663 3321 23333333 44555445555555544
No 26
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.53 E-value=8.5e-14 Score=108.07 Aligned_cols=120 Identities=23% Similarity=0.160 Sum_probs=81.1
Q ss_pred CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460 51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF 130 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~ 130 (182)
+.+..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.
T Consensus 79 ~~l~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 154 (272)
T 3rfs_A 79 SALKELTNLTYLILTGNQLQSLPNG----VFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD 154 (272)
T ss_dssp GGGTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred hhhcCCCCCCEEECCCCccCccChh----HhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc
Confidence 3566777788888888877764443 467778888888888887755555677778888888888887755555556
Q ss_pred ccCcCCCCCCCcEEecCcccCccc---ccccccC-------CCCccCcChhcccccCCC
Q 039460 131 WFDILDENGLPFLEQTANRLSLES---IDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 131 ~l~~l~~~~L~~l~l~~N~~~~~~---~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
.++ +|++|++++|.+++.. +..+++| |.+++..|..++.+++|+
T Consensus 155 ~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 155 KLT-----NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp TCT-----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cCc-----cCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 666 7788888888777442 3444444 566664444466666654
No 27
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.52 E-value=1.1e-13 Score=104.47 Aligned_cols=93 Identities=24% Similarity=0.306 Sum_probs=70.1
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
.|..+++|++|++++|.+++..+. .|..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..+..
T Consensus 52 ~~~~l~~L~~L~L~~N~i~~i~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 127 (220)
T 2v70_A 52 IFKKLPQLRKINFSNNKITDIEEG----AFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIG 127 (220)
T ss_dssp CGGGCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTT
T ss_pred hhccCCCCCEEECCCCcCCEECHH----HhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCC
Confidence 467778888888888888765443 5777888888888888887666666777888888888888887766777777
Q ss_pred cCcCCCCCCCcEEecCcccCcc
Q 039460 132 FDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
++ +|++|++++|.+++.
T Consensus 128 l~-----~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 128 LS-----SVRLLSLYDNQITTV 144 (220)
T ss_dssp CT-----TCSEEECTTSCCCCB
T ss_pred Cc-----cCCEEECCCCcCCEE
Confidence 66 777788877777744
No 28
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.52 E-value=1.7e-13 Score=100.01 Aligned_cols=105 Identities=19% Similarity=0.126 Sum_probs=85.2
Q ss_pred ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCE
Q 039460 38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC 113 (182)
Q Consensus 38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 113 (182)
|....|.|.... |..+. ++|++|++++|.+++..|. .|..+++|++|+|++|++++..+..|..+++|++
T Consensus 12 C~~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 85 (174)
T 2r9u_A 12 CDQTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPG----VFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQ 85 (174)
T ss_dssp ECSSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ECCcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHH----HhcCCcCCCEEECCCCCCCccChhHhCCcchhhE
Confidence 455667777543 44343 7899999999999986666 6899999999999999999654456789999999
Q ss_pred EEcccccccccccccccccCcCCCCCCCcEEecCcccCcc
Q 039460 114 LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 114 L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
|+|++|++++..+..+..++ +|++|++++|.+...
T Consensus 86 L~L~~N~l~~l~~~~~~~l~-----~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 86 LDLNDNHLKSIPRGAFDNLK-----SLTHIYLYNNPWDCE 120 (174)
T ss_dssp EECCSSCCCCCCTTTTTTCT-----TCSEEECCSSCBCTT
T ss_pred EECCCCccceeCHHHhcccc-----CCCEEEeCCCCcccc
Confidence 99999999954444577787 999999999998843
No 29
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.51 E-value=8.7e-14 Score=103.11 Aligned_cols=102 Identities=23% Similarity=0.200 Sum_probs=55.0
Q ss_pred ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCE
Q 039460 38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC 113 (182)
Q Consensus 38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 113 (182)
|.|..|.|.... |..+ .+.|++|++++|.++ .+|. .+..+++|++|+|++|.+++..+..|..+++|++
T Consensus 10 C~~~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~-~ip~----~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~ 82 (193)
T 2wfh_A 10 CLDTVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFT-LVPK----ELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLT 82 (193)
T ss_dssp EETTEEECTTSCCSSCCSCC--CTTCCEEECCSSCCC-SCCG----GGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred eCCCEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCc-hhHH----HhhcccCCCEEECCCCcCCEeCHhHccCCCCCCE
Confidence 578888887543 2222 135555555555555 3443 3555555555555555555444445555555555
Q ss_pred EEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460 114 LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 114 L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
|+|++|++++..|..+..++ +|++|++++|.++
T Consensus 83 L~Ls~N~l~~i~~~~f~~l~-----~L~~L~L~~N~l~ 115 (193)
T 2wfh_A 83 LILSYNRLRCIPPRTFDGLK-----SLRLLSLHGNDIS 115 (193)
T ss_dssp EECCSSCCCBCCTTTTTTCT-----TCCEEECCSSCCC
T ss_pred EECCCCccCEeCHHHhCCCC-----CCCEEECCCCCCC
Confidence 55555555544444454444 5555555555554
No 30
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.51 E-value=8.5e-14 Score=108.06 Aligned_cols=91 Identities=23% Similarity=0.270 Sum_probs=47.6
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
.+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..
T Consensus 104 ~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 179 (272)
T 3rfs_A 104 VFDKLTNLKELVLVENQLQSLPDG----VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK 179 (272)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred HhcCCcCCCEEECCCCcCCccCHH----HhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC
Confidence 345566666666666666543332 3455555666666666555444444455555555555555555433333444
Q ss_pred cCcCCCCCCCcEEecCcccC
Q 039460 132 FDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~ 151 (182)
++ +|++|++++|.++
T Consensus 180 l~-----~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 180 LT-----QLKDLRLYQNQLK 194 (272)
T ss_dssp CT-----TCCEEECCSSCCS
T ss_pred Cc-----cCCEEECCCCcCC
Confidence 44 4444444444444
No 31
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.50 E-value=5.9e-14 Score=99.32 Aligned_cols=90 Identities=21% Similarity=0.256 Sum_probs=52.7
Q ss_pred CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccc-ccccc
Q 039460 51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGS-VVIKV 129 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~-~p~~~ 129 (182)
..+..+++|++|++++|.+++. + .+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++. .|..+
T Consensus 36 ~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~ 109 (149)
T 2je0_A 36 GLTDEFEELEFLSTINVGLTSI-A-----NLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPL 109 (149)
T ss_dssp SCCTTCTTCCEEECTTSCCCCC-T-----TCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGG
T ss_pred HHHhhcCCCcEEECcCCCCCCc-h-----hhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHH
Confidence 3445566666666666666543 2 356666666666666666655555555566666666666666542 23555
Q ss_pred cccCcCCCCCCCcEEecCcccC
Q 039460 130 FWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
..++ +|+++++++|.++
T Consensus 110 ~~l~-----~L~~L~l~~N~l~ 126 (149)
T 2je0_A 110 KKLE-----NLKSLDLFNCEVT 126 (149)
T ss_dssp GGCT-----TCCEEECTTCGGG
T ss_pred hhCC-----CCCEEeCcCCccc
Confidence 5555 5666666666555
No 32
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.50 E-value=3.4e-13 Score=108.78 Aligned_cols=103 Identities=23% Similarity=0.192 Sum_probs=50.7
Q ss_pred ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccC-CCCCCcEEEccCCcCCcccchhccCCCCCC
Q 039460 38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLS-RLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112 (182)
Q Consensus 38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~-~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~ 112 (182)
|.+..|.|.... |..+. ..+++|+|++|.+++..+. .+. .+++|++|+|++|.+++..+..|..+++|+
T Consensus 18 C~~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~----~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~ 91 (361)
T 2xot_A 18 CASNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAE----WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91 (361)
T ss_dssp EETTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTT----SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred ECCCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChh----hhhhcccccCEEECCCCcCCccChhhccCCCCCC
Confidence 678889997643 22111 2345555555555543222 233 455555555555555533334455555555
Q ss_pred EEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460 113 CLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 113 ~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
+|+|++|++++..+..+..++ +|++|++++|.++
T Consensus 92 ~L~Ls~N~l~~~~~~~~~~l~-----~L~~L~L~~N~i~ 125 (361)
T 2xot_A 92 YLDLSSNHLHTLDEFLFSDLQ-----ALEVLLLYNNHIV 125 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCT-----TCCEEECCSSCCC
T ss_pred EEECCCCcCCcCCHHHhCCCc-----CCCEEECCCCccc
Confidence 555555555433333344444 4444444444444
No 33
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.49 E-value=2e-13 Score=102.99 Aligned_cols=95 Identities=27% Similarity=0.287 Sum_probs=74.0
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
+..|..+++|++|+|++|.+++..|. .|..+++|++|+|++|.++...+..|..+++|++|+|++|++++..|..+
T Consensus 49 ~~~~~~l~~L~~L~Ls~N~i~~~~~~----~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 124 (220)
T 2v9t_B 49 PGAFSPYKKLRRIDLSNNQISELAPD----AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF 124 (220)
T ss_dssp TTSSTTCTTCCEEECCSSCCCEECTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred HhHhhCCCCCCEEECCCCcCCCcCHH----HhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHc
Confidence 44677788888888888888876565 58888888888888888884434456788888888888888887777777
Q ss_pred cccCcCCCCCCCcEEecCcccCcc
Q 039460 130 FWFDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
..++ +|++|++++|.++..
T Consensus 125 ~~l~-----~L~~L~L~~N~l~~~ 143 (220)
T 2v9t_B 125 QDLH-----NLNLLSLYDNKLQTI 143 (220)
T ss_dssp TTCT-----TCCEEECCSSCCSCC
T ss_pred CCCC-----CCCEEECCCCcCCEE
Confidence 7777 788888888887744
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.49 E-value=2.2e-13 Score=106.05 Aligned_cols=41 Identities=29% Similarity=0.334 Sum_probs=16.1
Q ss_pred CCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460 82 SRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN 122 (182)
Q Consensus 82 ~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~ 122 (182)
..+++|++|++++|.+.+..|..+..+++|++|++++|.++
T Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 142 (285)
T 1ozn_A 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142 (285)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc
Confidence 33334444444444433333333333444444444444443
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.49 E-value=1.8e-13 Score=117.22 Aligned_cols=65 Identities=22% Similarity=0.231 Sum_probs=31.6
Q ss_pred cCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460 54 TPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN 122 (182)
Q Consensus 54 ~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~ 122 (182)
..+++|++|++++|.+++..|. .|..+++|++|+|++|.+++..|..|+.+++|++|+|++|.++
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 136 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ccCCCCcEEECCCCCCCCCChH----HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC
Confidence 3445555555555555543332 3444555555555555554433444444444444444444444
No 36
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.49 E-value=3.9e-13 Score=104.23 Aligned_cols=91 Identities=25% Similarity=0.252 Sum_probs=45.2
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
.+..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 122 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred HhccccCCcEEECCCCcCCccCHH----HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhccc
Confidence 344445555555555555432222 3445555555555555555444444555555555555555554333334444
Q ss_pred cCcCCCCCCCcEEecCcccC
Q 039460 132 FDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~ 151 (182)
++ +|++|++++|.++
T Consensus 123 l~-----~L~~L~l~~n~l~ 137 (276)
T 2z62_A 123 LK-----TLKELNVAHNLIQ 137 (276)
T ss_dssp CT-----TCCEEECCSSCCC
T ss_pred CC-----CCCEEECcCCccc
Confidence 44 5566666666555
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.48 E-value=3e-13 Score=112.40 Aligned_cols=92 Identities=26% Similarity=0.257 Sum_probs=54.5
Q ss_pred CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460 51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF 130 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~ 130 (182)
..|..+++|++|+|++|.+++..|. .|..+++|++|+|++|.+.+..+..|..+++|++|+|++|.+++..|..+.
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~ 125 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPG----AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred hHccCCCCCCEEECCCCccCEeChh----hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHcc
Confidence 3455566666666666666654444 466666666666666666533333455666666666666666655555555
Q ss_pred ccCcCCCCCCCcEEecCcccC
Q 039460 131 WFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 131 ~l~~l~~~~L~~l~l~~N~~~ 151 (182)
.++ +|++|++++|.++
T Consensus 126 ~l~-----~L~~L~l~~n~l~ 141 (477)
T 2id5_A 126 DLY-----NLKSLEVGDNDLV 141 (477)
T ss_dssp TCT-----TCCEEEECCTTCC
T ss_pred ccc-----cCCEEECCCCccc
Confidence 555 5566666666555
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.48 E-value=2e-13 Score=116.22 Aligned_cols=121 Identities=20% Similarity=0.158 Sum_probs=98.2
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
+..|..+++|++|+|++|.|++..|. .|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+
T Consensus 69 ~~~f~~l~~L~~L~Ls~N~i~~i~~~----~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~ 144 (635)
T 4g8a_A 69 SYSFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 144 (635)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCC
T ss_pred HHHHhCCCCCCEEECCCCcCCCcChh----HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhh
Confidence 56799999999999999999974443 68999999999999999996556689999999999999999997666678
Q ss_pred cccCcCCCCCCCcEEecCcccCcc----cccccccC-------CCCccCcChhcccccCCC
Q 039460 130 FWFDILDENGLPFLEQTANRLSLE----SIDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
+.++ +|++|++++|.++.. .+..+++| |.+++..|.++..+.++.
T Consensus 145 ~~L~-----~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~ 200 (635)
T 4g8a_A 145 GHLK-----TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 200 (635)
T ss_dssp TTCT-----TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT
T ss_pred hcCc-----ccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhh
Confidence 8888 999999999998742 34555555 566665566677666543
No 39
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.47 E-value=4e-13 Score=103.00 Aligned_cols=114 Identities=21% Similarity=0.217 Sum_probs=93.6
Q ss_pred CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCC
Q 039460 57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILD 136 (182)
Q Consensus 57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~ 136 (182)
+.++.|++++|.+++..+. .+..+++|++|++++|.+.+..|..|..+++|++|++++|++++..+..+..++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--- 107 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDA----TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT--- 107 (251)
T ss_dssp TTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT---
T ss_pred CCCCEEEccCCCcCccCHh----HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccC---
Confidence 5899999999999986665 689999999999999999987778899999999999999999966666777777
Q ss_pred CCCCCcEEecCcccCccc---ccccccC-------CCCccCcChhcccccCCC
Q 039460 137 ENGLPFLEQTANRLSLES---IDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 137 ~~~L~~l~l~~N~~~~~~---~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
+|++|++++|.++... +..+.+| |.+++..|..|+.+++|+
T Consensus 108 --~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 158 (251)
T 3m19_A 108 --QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ 158 (251)
T ss_dssp --TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred --CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence 9999999999998542 4445555 666663333587777765
No 40
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.47 E-value=3.5e-13 Score=104.94 Aligned_cols=121 Identities=17% Similarity=0.126 Sum_probs=89.1
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
+..+..+++|++|++++|.+++..|. .+..+++|++|++++|.+.+..+..|+.+++|++|++++|++++..+..+
T Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 98 PATFHGLGRLHTLHLDRCGLQELGPG----LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred HHHhcCCcCCCEEECCCCcCCEECHh----HhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh
Confidence 44567778888888888888765554 57889999999999999986555668889999999999999985545557
Q ss_pred cccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcccccCCC
Q 039460 130 FWFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
..++ +|++|++++|.+++. .+..+++| |.+.+..+..+..+++|+
T Consensus 174 ~~l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 174 RGLH-----SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp TTCT-----TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred cCcc-----ccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence 7777 888999999988854 34444444 556653334477777665
No 41
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.46 E-value=3.6e-13 Score=105.83 Aligned_cols=115 Identities=18% Similarity=0.204 Sum_probs=71.4
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCc-ccchhccCCCCCCEEEccccccccccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNN-SIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF 130 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~ 130 (182)
.+..+++|++|++++|.+.+..|. .+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..+.
T Consensus 121 ~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 196 (306)
T 2z66_A 121 VFLSLRNLIYLDISHTHTRVAFNG----IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 196 (306)
T ss_dssp TTTTCTTCCEEECTTSCCEECSTT----TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred hhhhccCCCEEECCCCcCCccchh----hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhc
Confidence 455566666666666666654444 45666667777777766664 4566666677777777777777655566666
Q ss_pred ccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcccc
Q 039460 131 WFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTLQQ 175 (182)
Q Consensus 131 ~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~~l 175 (182)
.++ +|++|++++|.++.. .+..+++| |.+.+..|..+..+
T Consensus 197 ~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 197 SLS-----SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp TCT-----TCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred CCC-----CCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 665 677777777777643 23334444 55666666666555
No 42
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.46 E-value=6.7e-13 Score=98.83 Aligned_cols=114 Identities=23% Similarity=0.160 Sum_probs=89.5
Q ss_pred CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460 56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL 135 (182)
Q Consensus 56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l 135 (182)
.++|++|++++|.+++..+. .+..+++|++|++++|++.+..+..|..+++|++|++++|.+++..+..+..++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-- 100 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNG----VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLT-- 100 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTT----TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT--
T ss_pred CCCCcEEEcCCCccCcCChh----hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCcc--
Confidence 35799999999999964443 578999999999999999965555678999999999999999965555567777
Q ss_pred CCCCCCcEEecCcccCcc---cccccccC-------CCCccCcCh-hcccccCCC
Q 039460 136 DENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPR-KTLQQTKIS 179 (182)
Q Consensus 136 ~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~-~l~~l~~L~ 179 (182)
+|++|++++|.++.. .+..+.+| |.+++ +|. .+..+++|+
T Consensus 101 ---~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~ 151 (208)
T 2o6s_A 101 ---QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQ 151 (208)
T ss_dssp ---TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCC
T ss_pred ---CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccce-eCHHHhccCCCcc
Confidence 999999999999854 24555555 56665 454 477777765
No 43
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=1.4e-13 Score=99.25 Aligned_cols=92 Identities=24% Similarity=0.249 Sum_probs=60.0
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccc-cccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGS-VVIK 128 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~-~p~~ 128 (182)
+..+..+++|++|++++|.+++. + .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++. .+..
T Consensus 42 ~~~~~~l~~L~~L~l~~n~l~~~-~-----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 115 (168)
T 2ell_A 42 EGLTAEFVNLEFLSLINVGLISV-S-----NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP 115 (168)
T ss_dssp SSCCGGGGGCCEEEEESSCCCCC-S-----SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGG
T ss_pred HHHHHhCCCCCEEeCcCCCCCCh-h-----hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHH
Confidence 33456667777777777777653 2 366777777777777777655666666677777777777777642 1145
Q ss_pred ccccCcCCCCCCCcEEecCcccCc
Q 039460 129 VFWFDILDENGLPFLEQTANRLSL 152 (182)
Q Consensus 129 ~~~l~~l~~~~L~~l~l~~N~~~~ 152 (182)
+..++ +|++|++++|.++.
T Consensus 116 l~~l~-----~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 116 LKKLE-----CLKSLDLFNCEVTN 134 (168)
T ss_dssp GSSCS-----CCCEEECCSSGGGT
T ss_pred HhcCC-----CCCEEEeeCCcCcc
Confidence 55555 67777777777663
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.46 E-value=3.3e-13 Score=106.03 Aligned_cols=67 Identities=22% Similarity=0.279 Sum_probs=34.2
Q ss_pred cCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc-cccccccccCcCCCCCCCcEEecCcccCc
Q 039460 81 LSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG-SVVIKVFWFDILDENGLPFLEQTANRLSL 152 (182)
Q Consensus 81 ~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~~l~~l~~~~L~~l~l~~N~~~~ 152 (182)
+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..++ +|++|++++|.++.
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-----~L~~L~Ls~n~l~~ 189 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR-----NLTFLDLSQCQLEQ 189 (306)
T ss_dssp TTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT-----TCCEEECTTSCCCE
T ss_pred hhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCc-----CCCEEECCCCCcCC
Confidence 3444445555555554444444444555555555555555543 3444444444 56666666666553
No 45
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.46 E-value=2.2e-13 Score=116.18 Aligned_cols=120 Identities=20% Similarity=0.134 Sum_probs=88.7
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
+..|..+++|++|++++|.+++..|. .|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++..|..+
T Consensus 49 ~~~~~~l~~L~~L~Ls~n~l~~i~~~----~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 124 (606)
T 3vq2_A 49 SYSFSNFSELQWLDLSRCEIETIEDK----AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPI 124 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCC
T ss_pred hhhccCCccCcEEeCCCCcccccCHH----HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccccccc
Confidence 44677888888888888888875555 57888888888888888887778888888888888888888886655777
Q ss_pred cccCcCCCCCCCcEEecCcccCc----ccccccccC-------CCCccCcChhcccccCC
Q 039460 130 FWFDILDENGLPFLEQTANRLSL----ESIDCIQDL-------IYLGGNLPRKTLQQTKI 178 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~----~~~~~l~~L-------~~l~g~ip~~l~~l~~L 178 (182)
+.++ +|++|++++|.+++ ..+..+++| |.+.+..|..++.+++|
T Consensus 125 ~~l~-----~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 125 GQLI-----TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp TTCT-----TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred CCCC-----CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 7777 78888888888763 235555555 45555445556655544
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.45 E-value=8.8e-13 Score=109.17 Aligned_cols=70 Identities=29% Similarity=0.249 Sum_probs=44.8
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG 123 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g 123 (182)
+..|..+++|++|+|++|.+++..|. .|..+++|++|+|++|.+++..+..|..+++|++|+|++|.+++
T Consensus 92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRNSIRQIEVG----AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIES 161 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCE
T ss_pred HHHcCCCCCCCEEECCCCccCCcChh----hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcce
Confidence 34556666777777777776654443 46667777777777777664444456666777777777776663
No 47
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.45 E-value=1.1e-12 Score=101.55 Aligned_cols=119 Identities=24% Similarity=0.224 Sum_probs=90.9
Q ss_pred CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460 51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF 130 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~ 130 (182)
..|..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.
T Consensus 79 ~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 79 GIFKELKNLETLWVTDNKLQALPIG----VFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp TTTSSCTTCCEEECCSSCCCCCCTT----TTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred hhhcCCCCCCEEECCCCcCCcCCHh----HcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence 3467889999999999999864333 578899999999999999977677788999999999999999855445567
Q ss_pred ccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcCh-hcccccCCC
Q 039460 131 WFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPR-KTLQQTKIS 179 (182)
Q Consensus 131 ~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~-~l~~l~~L~ 179 (182)
.++ +|++|++++|.++.. .+..+++| |.+++ +|. .+..+++|+
T Consensus 155 ~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 155 KLT-----SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEKLK 208 (270)
T ss_dssp TCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCC
T ss_pred CCc-----ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHHHhccccCCC
Confidence 777 899999999988844 24445555 55555 554 366666654
No 48
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.44 E-value=8.1e-13 Score=100.21 Aligned_cols=102 Identities=21% Similarity=0.224 Sum_probs=82.8
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
+..|..+++|++|++++|.++. +|.. .|..+++|++|+|++|.+++..+..|..+++|++|+|++|+++ .+|..+
T Consensus 57 ~~~~~~l~~L~~L~L~~N~l~~-i~~~---~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 131 (229)
T 3e6j_A 57 PGVFDSLINLKELYLGSNQLGA-LPVG---VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI 131 (229)
T ss_dssp TTTTTTCTTCCEEECCSSCCCC-CCTT---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG
T ss_pred HHHhhCccCCcEEECCCCCCCC-cChh---hcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccc
Confidence 5568889999999999999975 5542 5788999999999999998655666788999999999999998 888888
Q ss_pred cccCcCCCCCCCcEEecCcccCcc---cccccccC
Q 039460 130 FWFDILDENGLPFLEQTANRLSLE---SIDCIQDL 161 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L 161 (182)
..++ +|++|++++|.++.. .+..+++|
T Consensus 132 ~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L 161 (229)
T 3e6j_A 132 ERLT-----HLTHLALDQNQLKSIPHGAFDRLSSL 161 (229)
T ss_dssp GGCT-----TCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ccCC-----CCCEEECCCCcCCccCHHHHhCCCCC
Confidence 8887 889999999988844 34444554
No 49
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.43 E-value=5.8e-13 Score=98.41 Aligned_cols=114 Identities=19% Similarity=0.181 Sum_probs=94.6
Q ss_pred ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCE
Q 039460 38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC 113 (182)
Q Consensus 38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 113 (182)
|.|..|.|.... |..+. ..+++|++++|.+++..+.. .+..+++|++|+|++|.+++..|..|..+++|++
T Consensus 8 C~~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 82 (192)
T 1w8a_A 8 CEGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDG---LFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQE 82 (192)
T ss_dssp EETTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSC---SGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred ECCCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCcc---ccccCCCCCEEECCCCCCCCcCHhHcCCcccCCE
Confidence 789999998654 33333 38999999999998755431 3789999999999999999888999999999999
Q ss_pred EEcccccccccccccccccCcCCCCCCCcEEecCcccCcc---cccccccC
Q 039460 114 LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE---SIDCIQDL 161 (182)
Q Consensus 114 L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L 161 (182)
|+|++|++++..|..+..++ +|++|++++|++++. .+..+++|
T Consensus 83 L~Ls~N~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L 128 (192)
T 1w8a_A 83 LQLGENKIKEISNKMFLGLH-----QLKTLNLYDNQISCVMPGSFEHLNSL 128 (192)
T ss_dssp EECCSCCCCEECSSSSTTCT-----TCCEEECCSSCCCEECTTSSTTCTTC
T ss_pred EECCCCcCCccCHHHhcCCC-----CCCEEECCCCcCCeeCHHHhhcCCCC
Confidence 99999999988887788888 999999999999955 34444444
No 50
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.43 E-value=4.8e-13 Score=114.08 Aligned_cols=93 Identities=22% Similarity=0.166 Sum_probs=53.8
Q ss_pred CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460 51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF 130 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~ 130 (182)
..|..+++|++|++++|.+++..|. .|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++..|..+.
T Consensus 51 ~~~~~l~~L~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~ 126 (606)
T 3t6q_A 51 TTFSRLINLTFLDLTRCQIYWIHED----TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126 (606)
T ss_dssp TTSTTCTTCSEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCT
T ss_pred hHhccCccceEEECCCCccceeChh----hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhc
Confidence 3455555666666666666554444 455666666666666666555555566666666666666666544344455
Q ss_pred ccCcCCCCCCCcEEecCcccCc
Q 039460 131 WFDILDENGLPFLEQTANRLSL 152 (182)
Q Consensus 131 ~l~~l~~~~L~~l~l~~N~~~~ 152 (182)
.++ +|++|++++|.+++
T Consensus 127 ~l~-----~L~~L~L~~n~l~~ 143 (606)
T 3t6q_A 127 NQK-----TLESLYLGSNHISS 143 (606)
T ss_dssp TCT-----TCCEEECCSSCCCC
T ss_pred cCC-----cccEEECCCCcccc
Confidence 555 66666666666654
No 51
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.42 E-value=1e-12 Score=108.34 Aligned_cols=111 Identities=24% Similarity=0.216 Sum_probs=84.6
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
+..+..+++|++|++++|.+++..|. .+..+++|++|++++|.+.+..|..|..+++|++|++++|++++..|..+
T Consensus 292 ~~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 367 (455)
T 3v47_A 292 KSVFSHFTDLEQLTLAQNEINKIDDN----AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSF 367 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTT
T ss_pred hhhcccCCCCCEEECCCCcccccChh----HhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhc
Confidence 55677788888888888888876665 57888888888888888876667788888888888888888887777777
Q ss_pred cccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcC
Q 039460 130 FWFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLP 169 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip 169 (182)
..++ +|++|++++|+++.. .+..+++| |.+++.+|
T Consensus 368 ~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 368 LGLP-----NLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCT-----TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cccc-----cccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 7777 788888888888743 23444444 56666666
No 52
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.42 E-value=1e-12 Score=101.83 Aligned_cols=85 Identities=19% Similarity=0.120 Sum_probs=42.6
Q ss_pred CCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCC
Q 039460 58 QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDE 137 (182)
Q Consensus 58 ~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~ 137 (182)
.|++|++++|.+++..+. .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..+..++
T Consensus 29 ~l~~L~ls~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~---- 100 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSY----SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS---- 100 (276)
T ss_dssp TCCEEECTTCCCCEECTT----TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT----
T ss_pred CccEEECCCCcccccCHh----HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc----
Confidence 355555555555543222 345555555555555555533333455555555555555555544444444444
Q ss_pred CCCCcEEecCcccC
Q 039460 138 NGLPFLEQTANRLS 151 (182)
Q Consensus 138 ~~L~~l~l~~N~~~ 151 (182)
+|++|++++|.++
T Consensus 101 -~L~~L~l~~n~l~ 113 (276)
T 2z62_A 101 -SLQKLVAVETNLA 113 (276)
T ss_dssp -TCCEEECTTSCCC
T ss_pred -cccEEECCCCCcc
Confidence 5555555555544
No 53
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.41 E-value=1.9e-12 Score=101.58 Aligned_cols=86 Identities=26% Similarity=0.250 Sum_probs=45.4
Q ss_pred CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460 56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL 135 (182)
Q Consensus 56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l 135 (182)
+++|++|++++|.++ .+|. .+..+++|++|++++|++++..|..|..+++|++|++++|++++..+..+..++
T Consensus 76 l~~L~~L~Ls~N~l~-~l~~----~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-- 148 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQ-SLPL----LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP-- 148 (290)
T ss_dssp CTTCCEEECCSSCCS-SCCC----CTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCT--
T ss_pred CCcCCEEECCCCcCC-cCch----hhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccccc--
Confidence 344444444444444 2343 345555556666666655543344555556666666666665543333344444
Q ss_pred CCCCCCcEEecCcccC
Q 039460 136 DENGLPFLEQTANRLS 151 (182)
Q Consensus 136 ~~~~L~~l~l~~N~~~ 151 (182)
+|+.|++++|+++
T Consensus 149 ---~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 149 ---KLEKLSLANNNLT 161 (290)
T ss_dssp ---TCCEEECTTSCCS
T ss_pred ---CCCEEECCCCcCC
Confidence 5666666666665
No 54
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.41 E-value=1.2e-12 Score=109.89 Aligned_cols=91 Identities=21% Similarity=0.243 Sum_probs=68.1
Q ss_pred cCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCc--ccchhccCCCCCCEEEccccccccccccc-cc
Q 039460 54 TPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNN--SIFSSLGGLSSLRCLSLRSNRLNGSVVIK-VF 130 (182)
Q Consensus 54 ~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g--~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~~ 130 (182)
..+++|++|++++|.+++.+|. .+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++.+|.. +.
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFE----NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTT----TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred hhCCcccEEEeECCccChhhhh----hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 5678888888888888887776 57888888888888888875 56677888888888888888888767754 44
Q ss_pred ccCcCCCCCCCcEEecCcccCcc
Q 039460 131 WFDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 131 ~l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
.++ +|+++++++|.+++.
T Consensus 397 ~l~-----~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 397 WTK-----SLLSLNMSSNILTDT 414 (520)
T ss_dssp CCT-----TCCEEECCSSCCCGG
T ss_pred cCc-----cCCEEECcCCCCCcc
Confidence 444 566666666666544
No 55
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.41 E-value=9.5e-13 Score=97.44 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=56.6
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
.+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..|..++.+++|++|++++|.+++..|..+..
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~-~~-----~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~ 134 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATN-YN-----PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSC-CG-----GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT
T ss_pred HHhcCCCCCEEEccCCCCCc-ch-----hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh
Confidence 45566667777777765542 22 3666677777777777766656666666777777777777776656666666
Q ss_pred cCcCCCCCCCcEEecCcc
Q 039460 132 FDILDENGLPFLEQTANR 149 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~ 149 (182)
++ +|++|++++|.
T Consensus 135 l~-----~L~~L~L~~n~ 147 (197)
T 4ezg_A 135 LP-----KVNSIDLSYNG 147 (197)
T ss_dssp CS-----SCCEEECCSCT
T ss_pred CC-----CCCEEEccCCC
Confidence 65 66677776665
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.41 E-value=9.3e-13 Score=116.91 Aligned_cols=94 Identities=23% Similarity=0.228 Sum_probs=49.7
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccc-
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK- 128 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~- 128 (182)
+..|..+++|++|++++|.+.+.+++. .|..+++|++|+|++|.+.+..|..|+.+++|++|+|++|.+++.+|..
T Consensus 41 ~~~~~~l~~L~~LdLs~n~~~~~i~~~---~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 117 (844)
T 3j0a_A 41 ASSFPFLEQLQLLELGSQYTPLTIDKE---AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117 (844)
T ss_dssp SSSCSSCCSCSEEEECTTCCCCEECTT---TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTC
T ss_pred hhHCcccccCeEEeCCCCCCccccCHH---HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCc
Confidence 344555555555555555444444321 4555555555555555555545555555555555555555555544443
Q ss_pred -ccccCcCCCCCCCcEEecCcccC
Q 039460 129 -VFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 129 -~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
+..++ +|++|++++|.++
T Consensus 118 ~~~~L~-----~L~~L~Ls~N~l~ 136 (844)
T 3j0a_A 118 YFRNLK-----ALTRLDLSKNQIR 136 (844)
T ss_dssp CCSSCS-----SCCEEEEESCCCC
T ss_pred cccccC-----CCCEEECCCCccc
Confidence 44444 5555555555554
No 57
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.41 E-value=8.6e-13 Score=114.02 Aligned_cols=91 Identities=27% Similarity=0.208 Sum_probs=46.3
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF 132 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 132 (182)
|..+++|++|++++|.+++..|. .+..+++|++|++++|.+++..+..|+.+++|++|++++|.+++..|..++.+
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 120 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPE----LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTT----HHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTC
T ss_pred HhCCCcCcEEECCCCccCccCHH----HHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHcccc
Confidence 44455555555555555544333 34455555555555555552222245555555555555555554333445444
Q ss_pred CcCCCCCCCcEEecCcccCc
Q 039460 133 DILDENGLPFLEQTANRLSL 152 (182)
Q Consensus 133 ~~l~~~~L~~l~l~~N~~~~ 152 (182)
+ +|++|++++|.+++
T Consensus 121 ~-----~L~~L~Ls~n~l~~ 135 (680)
T 1ziw_A 121 K-----NLITLDLSHNGLSS 135 (680)
T ss_dssp T-----TCCEEECCSSCCSC
T ss_pred C-----CCCEEECCCCcccc
Confidence 4 55566666555553
No 58
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.41 E-value=1.5e-12 Score=102.23 Aligned_cols=117 Identities=21% Similarity=0.164 Sum_probs=84.6
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
+..+..+++|++|++++|.+++ ++. ...+++|++|++++|.+. .+|..+..+++|++|++++|++++..|..+
T Consensus 48 ~~~~~~l~~L~~L~L~~n~l~~-~~~-----~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~ 120 (290)
T 1p9a_G 48 LATLMPYTRLTQLNLDRAELTK-LQV-----DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120 (290)
T ss_dssp GGGGTTCTTCCEEECTTSCCCE-EEC-----CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTT
T ss_pred HHHhhcCCCCCEEECCCCccCc-ccC-----CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHH
Confidence 3456677788888888888775 443 367788888888888887 778888888899999999999886556677
Q ss_pred cccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChh-cccccCCC
Q 039460 130 FWFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRK-TLQQTKIS 179 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~-l~~l~~L~ 179 (182)
..++ +|++|++++|.++.. .+..+.+| |.+++ +|.. |..+++|+
T Consensus 121 ~~l~-----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 121 RGLG-----ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLD 175 (290)
T ss_dssp TTCT-----TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCC
T ss_pred cCCC-----CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCCC
Confidence 7777 889999999988844 34444444 55554 5554 45565554
No 59
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.41 E-value=5.5e-13 Score=94.23 Aligned_cols=112 Identities=19% Similarity=0.226 Sum_probs=93.2
Q ss_pred CCCCCEEECcCCccc-cccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCc
Q 039460 56 FQQLESLDLIGNNIV-GCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDI 134 (182)
Q Consensus 56 l~~L~~L~Ls~n~l~-g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~ 134 (182)
.+++++|++++|.++ +.+|. .+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+..++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~- 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG----LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP- 88 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS----CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT-
T ss_pred CccCeEEEccCCcCChhHHHH----HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC-
Confidence 468999999999998 77887 588999999999999999855 7789999999999999999987888887788
Q ss_pred CCCCCCCcEEecCcccCc----ccccccccC-------CCCccCcCh----hcccccCCC
Q 039460 135 LDENGLPFLEQTANRLSL----ESIDCIQDL-------IYLGGNLPR----KTLQQTKIS 179 (182)
Q Consensus 135 l~~~~L~~l~l~~N~~~~----~~~~~l~~L-------~~l~g~ip~----~l~~l~~L~ 179 (182)
+|+++++++|.+++ ..+..+++| |.+++ +|. .+..+++|+
T Consensus 89 ----~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~ 143 (149)
T 2je0_A 89 ----NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFKLLPQLT 143 (149)
T ss_dssp ----TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHHHCTTCC
T ss_pred ----CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHHHCCCcc
Confidence 99999999999996 345566665 55555 443 577777765
No 60
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.40 E-value=2e-12 Score=110.19 Aligned_cols=111 Identities=18% Similarity=0.061 Sum_probs=93.6
Q ss_pred ccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEE
Q 039460 40 WEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115 (182)
Q Consensus 40 w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 115 (182)
+..|.|...+ |..+. ..+++|++++|.+++..|. .|..+++|++|++++|.+.+..|..|..+++|++|+
T Consensus 14 ~~~~~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 87 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNT----TFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC--TTCCEEECTTCCCSEECTT----TSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CceEECCCCCcccCcCCCC--CcCcEEEccCCccCcCChh----HhccCccceEEECCCCccceeChhhccCccccCeee
Confidence 4457787653 44443 4799999999999986665 699999999999999999988899999999999999
Q ss_pred cccccccccccccccccCcCCCCCCCcEEecCcccCcc---cccccccC
Q 039460 116 LRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE---SIDCIQDL 161 (182)
Q Consensus 116 L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L 161 (182)
+++|.+++..|..++.++ +|++|++++|.++.. .+..+++|
T Consensus 88 Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~i~~l~~~~~~~l~~L 131 (606)
T 3t6q_A 88 LTANPLIFMAETALSGPK-----ALKHLFFIQTGISSIDFIPLHNQKTL 131 (606)
T ss_dssp CTTCCCSEECTTTTSSCT-----TCCEEECTTSCCSCGGGSCCTTCTTC
T ss_pred CCCCcccccChhhhcccc-----cccEeeccccCcccCCcchhccCCcc
Confidence 999999988899999888 999999999999963 45555555
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.40 E-value=2.1e-12 Score=109.06 Aligned_cols=91 Identities=25% Similarity=0.252 Sum_probs=48.5
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
.|..+++|++|++++|.+++..|. .|..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..++.
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~ 122 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQTIEDG----AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGH 122 (570)
T ss_dssp TTTTCSSCCEEECTTCCCCEECTT----TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTT
T ss_pred HhhCCCCceEEECCCCcCCccCcc----cccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccc
Confidence 445555555555555555543332 3555555555555555555444445555555555555555555322223444
Q ss_pred cCcCCCCCCCcEEecCcccC
Q 039460 132 FDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~ 151 (182)
++ +|++|++++|.++
T Consensus 123 l~-----~L~~L~L~~n~l~ 137 (570)
T 2z63_A 123 LK-----TLKELNVAHNLIQ 137 (570)
T ss_dssp CT-----TCCEEECCSSCCC
T ss_pred cc-----cccEEecCCCccc
Confidence 44 5666666666555
No 62
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.40 E-value=1.8e-12 Score=115.07 Aligned_cols=117 Identities=18% Similarity=0.030 Sum_probs=98.8
Q ss_pred CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCccc-chhccCCCCCCEEEcccccccccccccccccC
Q 039460 55 PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSI-FSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFD 133 (182)
Q Consensus 55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~-p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~ 133 (182)
-.+++++|+|++|.+++..|. .|..+++|++|+|++|...+.+ |..|..+++|++|+|++|.+++..|..+..++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~----~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTAS----SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSS----SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcCCccChh----HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 347899999999999987676 6999999999999999777777 67899999999999999999988899999998
Q ss_pred cCCCCCCCcEEecCcccCccc-----ccccccC-------CCCccCcC-hhcccccCCCC
Q 039460 134 ILDENGLPFLEQTANRLSLES-----IDCIQDL-------IYLGGNLP-RKTLQQTKISE 180 (182)
Q Consensus 134 ~l~~~~L~~l~l~~N~~~~~~-----~~~l~~L-------~~l~g~ip-~~l~~l~~L~~ 180 (182)
+|++|++++|.+++.. +..+++| |.+.+..| +.|+++++|++
T Consensus 98 -----~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~ 152 (844)
T 3j0a_A 98 -----HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKS 152 (844)
T ss_dssp -----SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCE
T ss_pred -----ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCE
Confidence 9999999999998642 5566666 56666444 56888888763
No 63
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.39 E-value=3.5e-12 Score=101.26 Aligned_cols=102 Identities=23% Similarity=0.203 Sum_probs=77.0
Q ss_pred CccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCC
Q 039460 37 CCQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR 112 (182)
Q Consensus 37 ~c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~ 112 (182)
.|.|..+.|...+ |..+ .+.+++|++++|.+++..+. .+..+++|++|++++|.+.+..|..|..+++|+
T Consensus 30 ~c~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (330)
T 1xku_A 30 QCHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIKDG----DFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103 (330)
T ss_dssp EEETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred cCCCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeChh----hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCC
Confidence 4689999998643 3323 25788899999998875443 588889999999999998877788888889999
Q ss_pred EEEcccccccccccccccccCcCCCCCCCcEEecCcccCc
Q 039460 113 CLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSL 152 (182)
Q Consensus 113 ~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~ 152 (182)
+|++++|.++ .+|..+. + +|++|++++|.++.
T Consensus 104 ~L~Ls~n~l~-~l~~~~~--~-----~L~~L~l~~n~l~~ 135 (330)
T 1xku_A 104 RLYLSKNQLK-ELPEKMP--K-----TLQELRVHENEITK 135 (330)
T ss_dssp EEECCSSCCS-BCCSSCC--T-----TCCEEECCSSCCCB
T ss_pred EEECCCCcCC-ccChhhc--c-----cccEEECCCCcccc
Confidence 9999998887 6776553 3 56666666666663
No 64
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.39 E-value=1.8e-12 Score=108.77 Aligned_cols=114 Identities=19% Similarity=0.128 Sum_probs=93.1
Q ss_pred CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc-cccccc
Q 039460 51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG-SVVIKV 129 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~ 129 (182)
..|..+++|++|++++|.+++..|. .|..+++|++|++++|.++ .+|.. .+++|++|++++|.+++ .+|..+
T Consensus 39 ~~~~~l~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~ 111 (520)
T 2z7x_B 39 SDILSLSKLRILIISHNRIQYLDIS----VFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEF 111 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCCEEEGG----GGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGG
T ss_pred hhccccccccEEecCCCccCCcChH----HhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhh
Confidence 4677889999999999999987676 6899999999999999998 68876 78999999999999987 578889
Q ss_pred cccCcCCCCCCCcEEecCcccCcccccccccC---------CCC--ccCcChhccccc
Q 039460 130 FWFDILDENGLPFLEQTANRLSLESIDCIQDL---------IYL--GGNLPRKTLQQT 176 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~~~~~~l~~L---------~~l--~g~ip~~l~~l~ 176 (182)
+.++ +|++|++++|.+++..+..+.+| +.+ .+.+|..+..++
T Consensus 112 ~~l~-----~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 112 GNMS-----QLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp GGCT-----TCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred ccCC-----cceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccc
Confidence 8888 89999999999987766666555 344 566676666643
No 65
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.38 E-value=2.7e-13 Score=120.84 Aligned_cols=119 Identities=13% Similarity=0.167 Sum_probs=94.5
Q ss_pred CCCcc--CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCc-CCc-ccchhccCCC-------CCCEEEccc
Q 039460 50 CSLFT--PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNS-FNN-SIFSSLGGLS-------SLRCLSLRS 118 (182)
Q Consensus 50 ~~~~~--~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~-l~g-~~p~~~~~l~-------~L~~L~L~~ 118 (182)
|..++ .+++|++|+|++|.+.|.+|. .+..+++|++|+|++|+ ++| .+|..++.++ +|++|+|++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~----~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~ 557 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPD----FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCG----GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChH----HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC
Confidence 45555 899999999999999999997 68999999999999998 888 8888766555 999999999
Q ss_pred ccccccccc--cccccCcCCCCCCCcEEecCcccCcc-cccccccC-------CCCccCcChhcccccC-CC
Q 039460 119 NRLNGSVVI--KVFWFDILDENGLPFLEQTANRLSLE-SIDCIQDL-------IYLGGNLPRKTLQQTK-IS 179 (182)
Q Consensus 119 N~l~g~~p~--~~~~l~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L-------~~l~g~ip~~l~~l~~-L~ 179 (182)
|.++ .+|. .++.++ +|++|++++|.++.- .+..+++| |.+. .+|.+++.+++ |+
T Consensus 558 N~L~-~ip~~~~l~~L~-----~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~ 622 (876)
T 4ecn_A 558 NNLE-EFPASASLQKMV-----KLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVE 622 (876)
T ss_dssp SCCC-BCCCHHHHTTCT-----TCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCC
T ss_pred CcCC-ccCChhhhhcCC-----CCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCC
Confidence 9998 8888 888888 888888888888711 33344444 5556 68877777766 54
No 66
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.38 E-value=1.9e-12 Score=95.85 Aligned_cols=102 Identities=18% Similarity=0.271 Sum_probs=86.9
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
++.+..+++|++|++++|.+++..|. .+..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+| .+
T Consensus 81 ~~~l~~l~~L~~L~l~~n~l~~~~~~----~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l 155 (197)
T 4ezg_A 81 YNPISGLSNLERLRIMGKDVTSDKIP----NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PL 155 (197)
T ss_dssp CGGGTTCTTCCEEEEECTTCBGGGSC----CCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GG
T ss_pred chhhhcCCCCCEEEeECCccCcccCh----hhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hh
Confidence 55788899999999999999987776 69999999999999999998889999999999999999998444676 57
Q ss_pred cccCcCCCCCCCcEEecCcccCcc-cccccccC
Q 039460 130 FWFDILDENGLPFLEQTANRLSLE-SIDCIQDL 161 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L 161 (182)
..++ +|++|++++|.++.. .+..+++|
T Consensus 156 ~~l~-----~L~~L~l~~n~i~~~~~l~~l~~L 183 (197)
T 4ezg_A 156 KTLP-----ELKSLNIQFDGVHDYRGIEDFPKL 183 (197)
T ss_dssp GGCS-----SCCEEECTTBCCCCCTTGGGCSSC
T ss_pred cCCC-----CCCEEECCCCCCcChHHhccCCCC
Confidence 7777 899999999999854 44444444
No 67
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.38 E-value=5.6e-12 Score=100.19 Aligned_cols=100 Identities=21% Similarity=0.195 Sum_probs=72.9
Q ss_pred ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCE
Q 039460 38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRC 113 (182)
Q Consensus 38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~ 113 (182)
|.|..+.|.... |..+ .+++++|++++|.+++..|. .+..+++|++|++++|.+++..|..|+.+++|++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELRKD----DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQK 106 (332)
T ss_dssp EETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCE
T ss_pred ccCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccCHh----HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCE
Confidence 789999997643 3333 35788888888888765454 5788888888888888888666778888888888
Q ss_pred EEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460 114 LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 114 L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
|++++|.++ .+|..+. + +|++|++++|.++
T Consensus 107 L~L~~n~l~-~l~~~~~--~-----~L~~L~l~~n~i~ 136 (332)
T 2ft3_A 107 LYISKNHLV-EIPPNLP--S-----SLVELRIHDNRIR 136 (332)
T ss_dssp EECCSSCCC-SCCSSCC--T-----TCCEEECCSSCCC
T ss_pred EECCCCcCC-ccCcccc--c-----cCCEEECCCCccC
Confidence 888888887 6666553 3 5666666666655
No 68
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.37 E-value=4.2e-13 Score=117.56 Aligned_cols=115 Identities=22% Similarity=0.249 Sum_probs=95.1
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
+..+..+++|++|+|++|.|+ .+|. .|..+++|++|+|++|.++ .+|..|+.+++|++|+|++|.++ .+|..+
T Consensus 240 ~~~~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~ 312 (727)
T 4b8c_D 240 SANIFKYDFLTRLYLNGNSLT-ELPA----EIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEF 312 (727)
T ss_dssp CGGGGGCCSCSCCBCTTSCCS-CCCG----GGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSST
T ss_pred ChhhcCCCCCCEEEeeCCcCc-ccCh----hhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhh
Confidence 456668999999999999999 7887 6899999999999999999 88999999999999999999997 889999
Q ss_pred cccCcCCCCCCCcEEecCcccCccccccccc---------C--CCCccCcChhccccc
Q 039460 130 FWFDILDENGLPFLEQTANRLSLESIDCIQD---------L--IYLGGNLPRKTLQQT 176 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~~~~~~l~~---------L--~~l~g~ip~~l~~l~ 176 (182)
+.++ +|++|++++|.+++.....+.. | |.++|.+|.++..+.
T Consensus 313 ~~l~-----~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~ 365 (727)
T 4b8c_D 313 GNLC-----NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIE 365 (727)
T ss_dssp TSCT-----TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----
T ss_pred hcCC-----CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeE
Confidence 8888 9999999999999763333221 1 788999998776554
No 69
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=2.8e-12 Score=94.95 Aligned_cols=94 Identities=26% Similarity=0.259 Sum_probs=82.3
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
|..|..+++|++|++++|.+++..+. .|..+++|++|+|++|.+++..|..|..+++|++|+|++|.+++..+..+
T Consensus 47 p~~~~~l~~L~~L~Ls~N~i~~i~~~----~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~ 122 (193)
T 2wfh_A 47 PKELSNYKHLTLIDLSNNRISTLSNQ----SFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF 122 (193)
T ss_dssp CGGGGGCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT
T ss_pred HHHhhcccCCCEEECCCCcCCEeCHh----HccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh
Confidence 56788999999999999999975554 69999999999999999997777789999999999999999995444457
Q ss_pred cccCcCCCCCCCcEEecCcccCc
Q 039460 130 FWFDILDENGLPFLEQTANRLSL 152 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~ 152 (182)
..++ +|+++++++|.+..
T Consensus 123 ~~l~-----~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 123 NDLS-----ALSHLAIGANPLYC 140 (193)
T ss_dssp TTCT-----TCCEEECCSSCEEC
T ss_pred hcCc-----cccEEEeCCCCeec
Confidence 7777 89999999999874
No 70
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.37 E-value=1.3e-12 Score=105.90 Aligned_cols=99 Identities=20% Similarity=0.188 Sum_probs=73.3
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccc-ccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK-VFW 131 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~~~ 131 (182)
+..+++|++|++++|.+++..+. .+..+++|++|++++|.+.+..|..|+.+++|++|++++|.++ .+|.. +..
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~ 139 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTY----AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHN 139 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred hcccccCcEEECCCCcccccChh----hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcC
Confidence 45677888888888888764443 5788888888888888888666677888888888888888887 55554 466
Q ss_pred cCcCCCCCCCcEEecCcccCcc---cccccccC
Q 039460 132 FDILDENGLPFLEQTANRLSLE---SIDCIQDL 161 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L 161 (182)
++ +|++|++++|.++.. .+..+++|
T Consensus 140 l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L 167 (390)
T 3o6n_A 140 TP-----KLTTLSMSNNNLERIEDDTFQATTSL 167 (390)
T ss_dssp CT-----TCCEEECCSSCCCBCCTTTTSSCTTC
T ss_pred CC-----CCcEEECCCCccCccChhhccCCCCC
Confidence 66 788888888887744 24444554
No 71
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.37 E-value=2.6e-12 Score=106.76 Aligned_cols=121 Identities=17% Similarity=0.111 Sum_probs=92.3
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
+..|..+++|++|++++|.+++ +|.. .|..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..+
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~-~~~~---~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 148 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKL-IPLG---VFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF 148 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCS-CCTT---SSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS
T ss_pred hhhhhCCccCCEEECCCCcCCc-cCcc---cccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc
Confidence 6678889999999999999986 5542 57889999999999999998788889999999999999999988778788
Q ss_pred cccCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcccccCCC
Q 039460 130 FWFDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
..++ +|+.|++++|.++.. .+..+++| +.+.+..+..|..+++|+
T Consensus 149 ~~l~-----~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 203 (477)
T 2id5_A 149 SGLN-----SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203 (477)
T ss_dssp TTCT-----TCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred cCCC-----CCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence 8777 888888888888744 23444444 344443333455555443
No 72
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.36 E-value=3.8e-12 Score=107.98 Aligned_cols=91 Identities=23% Similarity=0.257 Sum_probs=58.5
Q ss_pred cCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCc--ccchhccCCCCCCEEEccccccccccccc-cc
Q 039460 54 TPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNN--SIFSSLGGLSSLRCLSLRSNRLNGSVVIK-VF 130 (182)
Q Consensus 54 ~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g--~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~~ 130 (182)
..+++|++|++++|.+++.+|. .+..+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|.. +.
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~ 425 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQ----GCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCA 425 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTT----TCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCC
T ss_pred cCCCCceEEECCCCccccchhh----hhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhc
Confidence 4567777777777777776665 46777777777777777764 33456677777777777777777655553 33
Q ss_pred ccCcCCCCCCCcEEecCcccCcc
Q 039460 131 WFDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 131 ~l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
.++ +|+++++++|.+++.
T Consensus 426 ~l~-----~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 426 WAE-----SILVLNLSSNMLTGS 443 (562)
T ss_dssp CCT-----TCCEEECCSSCCCGG
T ss_pred Ccc-----cCCEEECCCCCCCcc
Confidence 344 455555555555433
No 73
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.36 E-value=5.5e-12 Score=104.02 Aligned_cols=101 Identities=22% Similarity=0.200 Sum_probs=63.0
Q ss_pred ccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEE
Q 039460 40 WEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115 (182)
Q Consensus 40 w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 115 (182)
|..|.|.... |..+. +.+++|+|++|.+++..+. .|..+++|++|+|++|.+.+..+..|..+++|++|+
T Consensus 45 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVN----SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTT----TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred CCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHH----HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence 6688997653 32222 4566777777777654443 466677777777777776655555666677777777
Q ss_pred cccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460 116 LRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 116 L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
|++|++++..+..+..++ +|++|++++|.++
T Consensus 119 L~~n~l~~~~~~~~~~l~-----~L~~L~L~~N~i~ 149 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLS-----KLKELWLRNNPIE 149 (440)
T ss_dssp CCSSCCSSCCTTTSCSCS-----SCCEEECCSCCCC
T ss_pred CCCCcCCeeCHhHhhccc-----cCceeeCCCCccc
Confidence 777776643334455555 6666666666655
No 74
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.36 E-value=1.3e-12 Score=110.00 Aligned_cols=131 Identities=22% Similarity=0.156 Sum_probs=103.9
Q ss_pred CccccceEEcCCC------CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCC
Q 039460 37 CCQWEAVEKATYE------CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSS 110 (182)
Q Consensus 37 ~c~w~gv~c~~~~------~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~ 110 (182)
.|.|.|| |+... |..+. ++|++|++++|.+++..|. .+..+++|++|++++|++.+..|..|..+++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 75 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHG----DLRACANLQVLILKSSRINTIEGDAFYSLGS 75 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSS----TTSSCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCce-EECCCCccccccccCC--CCccEEECcCCccCccChh----hhhcCCcccEEECCCCCcCccChhhcccccc
Confidence 6999999 86432 44332 6899999999999987666 6999999999999999999877889999999
Q ss_pred CCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCcc----cccccccC-------CCCccCcCh-hcccccCC
Q 039460 111 LRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE----SIDCIQDL-------IYLGGNLPR-KTLQQTKI 178 (182)
Q Consensus 111 L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L-------~~l~g~ip~-~l~~l~~L 178 (182)
|++|++++|.+++..|..++.++ +|++|++++|.++.. .+..+++| +.+.+.+|. .++.+++|
T Consensus 76 L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L 150 (549)
T 2z81_A 76 LEHLDLSDNHLSSLSSSWFGPLS-----SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150 (549)
T ss_dssp CCEEECTTSCCCSCCHHHHTTCT-----TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CCEEECCCCccCccCHHHhccCC-----CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccccc
Confidence 99999999999977777788888 999999999999842 35555555 333444653 46666655
Q ss_pred C
Q 039460 179 S 179 (182)
Q Consensus 179 ~ 179 (182)
+
T Consensus 151 ~ 151 (549)
T 2z81_A 151 N 151 (549)
T ss_dssp E
T ss_pred C
Confidence 4
No 75
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.36 E-value=6.2e-12 Score=101.99 Aligned_cols=94 Identities=20% Similarity=0.130 Sum_probs=71.5
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchh-ccCCCCCCEEEccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSS-LGGLSSLRCLSLRSNRLNGSVVIK 128 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~-~~~l~~L~~L~L~~N~l~g~~p~~ 128 (182)
+..+..+++|++|++++|.+++..|. .+..+++|++|++++|.+. .+|.. |..+++|++|++++|.+++..|..
T Consensus 86 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 160 (390)
T 3o6n_A 86 TYAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTT
T ss_pred hhhccCCCCcCEEECCCCCCCcCCHH----HhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhh
Confidence 34778888999999999998875554 5788888889999888888 55554 578888888888888888666666
Q ss_pred ccccCcCCCCCCCcEEecCcccCcc
Q 039460 129 VFWFDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 129 ~~~l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
+..++ +|++|++++|.++..
T Consensus 161 ~~~l~-----~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 161 FQATT-----SLQNLQLSSNRLTHV 180 (390)
T ss_dssp TSSCT-----TCCEEECCSSCCSBC
T ss_pred ccCCC-----CCCEEECCCCcCCcc
Confidence 76666 666666666666543
No 76
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=2.7e-12 Score=103.45 Aligned_cols=95 Identities=20% Similarity=0.103 Sum_probs=78.2
Q ss_pred CCCcc-CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccc
Q 039460 50 CSLFT-PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK 128 (182)
Q Consensus 50 ~~~~~-~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~ 128 (182)
+..+. .+++|++|+|++|.+++..+. .|..+++|++|+|++|++.+..+..|..+++|++|+|++|++++..|..
T Consensus 56 ~~~~~~~l~~L~~L~L~~N~i~~i~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 131 (361)
T 2xot_A 56 AEWTPTRLTNLHSLLLSHNHLNFISSE----AFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA 131 (361)
T ss_dssp TTSSSSCCTTCCEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred hhhhhhcccccCEEECCCCcCCccChh----hccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHH
Confidence 34455 788999999999999875444 5888999999999999998665667888999999999999998777788
Q ss_pred ccccCcCCCCCCCcEEecCcccCcc
Q 039460 129 VFWFDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 129 ~~~l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
+..++ +|+.|++++|.++..
T Consensus 132 ~~~l~-----~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 132 FEDMA-----QLQKLYLSQNQISRF 151 (361)
T ss_dssp TTTCT-----TCCEEECCSSCCCSC
T ss_pred hCCcc-----cCCEEECCCCcCCee
Confidence 88877 889999999988843
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.35 E-value=3.6e-12 Score=108.15 Aligned_cols=95 Identities=21% Similarity=0.203 Sum_probs=46.1
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc-ccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG-SVVIKVF 130 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g-~~p~~~~ 130 (182)
.|..+++|++|++++|.+++..|. .|..+++|++|++++|.++ .+|.. .+++|++|++++|++++ .+|..++
T Consensus 71 ~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~ 143 (562)
T 3a79_B 71 DISFLSELRVLRLSHNRIRSLDFH----VFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFG 143 (562)
T ss_dssp GTTTCTTCCEEECCSCCCCEECTT----TTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGG
T ss_pred hhccCCCccEEECCCCCCCcCCHH----HhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhc
Confidence 344444455555555554443333 3444555555555555544 34443 44555555555555543 2334455
Q ss_pred ccCcCCCCCCCcEEecCcccCccccccc
Q 039460 131 WFDILDENGLPFLEQTANRLSLESIDCI 158 (182)
Q Consensus 131 ~l~~l~~~~L~~l~l~~N~~~~~~~~~l 158 (182)
.++ +|++|++++|.++...+..+
T Consensus 144 ~l~-----~L~~L~L~~n~l~~~~~~~l 166 (562)
T 3a79_B 144 NLT-----KLTFLGLSAAKFRQLDLLPV 166 (562)
T ss_dssp GCT-----TCCEEEEECSBCCTTTTGGG
T ss_pred ccC-----cccEEecCCCccccCchhhh
Confidence 554 55666666665554433333
No 78
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.35 E-value=4.3e-12 Score=107.14 Aligned_cols=119 Identities=22% Similarity=0.234 Sum_probs=79.3
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc-ccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN-GSVVIKVFW 131 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~-g~~p~~~~~ 131 (182)
+..+++|++|++++|.+.+..|.. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~ 468 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFS---VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSC---TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred ccccCCCCEEEccCCccccccchh---hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhc
Confidence 556677777777777776654432 4667777777777777777667777777777777777777776 567777776
Q ss_pred cCcCCCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcccccCCC
Q 039460 132 FDILDENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
++ +|++|++++|.+++. .+..+++| |.+++..|..+..+++|+
T Consensus 469 l~-----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 469 LR-----NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp CT-----TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred cc-----CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 66 777777777777744 33344444 455654444566666654
No 79
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=9.3e-12 Score=90.39 Aligned_cols=95 Identities=21% Similarity=0.211 Sum_probs=80.1
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
+..+..+++|++|++++|.+++..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+
T Consensus 45 ~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 120 (177)
T 2o6r_A 45 HGVFDKLTQLTKLSLSQNQIQSLPDG----VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF 120 (177)
T ss_dssp TTTTTTCTTCSEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred HHHhcCcccccEEECCCCcceEeChh----HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh
Confidence 44678899999999999999864433 57899999999999999996666678999999999999999985444445
Q ss_pred cccCcCCCCCCCcEEecCcccCcc
Q 039460 130 FWFDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
..++ +|+++++++|.+++.
T Consensus 121 ~~l~-----~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 121 DRLT-----SLQKIWLHTNPWDCS 139 (177)
T ss_dssp TTCT-----TCCEEECCSSCBCCC
T ss_pred cCCc-----ccCEEEecCCCeecc
Confidence 6677 899999999999865
No 80
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.34 E-value=7.7e-12 Score=103.15 Aligned_cols=78 Identities=26% Similarity=0.201 Sum_probs=55.7
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
+..|..+++|++|+|++|.+++..+. .|..+++|++|+|++|.++...+..|..+++|++|+|++|.+++..+..+
T Consensus 81 ~~~~~~l~~L~~L~Ls~n~i~~i~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~ 156 (440)
T 3zyj_A 81 VNSFKHLRHLEILQLSRNHIRTIEIG----AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAF 156 (440)
T ss_dssp TTTTSSCSSCCEEECCSSCCCEECGG----GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTT
T ss_pred HHHhhCCCCCCEEECCCCcCCccChh----hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHh
Confidence 45677888888888888888764444 57788888888888888874444567778888888888887774333333
Q ss_pred cc
Q 039460 130 FW 131 (182)
Q Consensus 130 ~~ 131 (182)
..
T Consensus 157 ~~ 158 (440)
T 3zyj_A 157 NR 158 (440)
T ss_dssp TT
T ss_pred hh
Confidence 33
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.34 E-value=4.6e-12 Score=96.21 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=52.9
Q ss_pred CCCEEECcCCccccccCcccccccCCCCCCcEEEccCCc-CCcccchhccCCCCCCEEEccc-ccccccccccccccCcC
Q 039460 58 QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNS-FNNSIFSSLGGLSSLRCLSLRS-NRLNGSVVIKVFWFDIL 135 (182)
Q Consensus 58 ~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~-l~g~~p~~~~~l~~L~~L~L~~-N~l~g~~p~~~~~l~~l 135 (182)
.+++|++++|.+++..+. .|..+++|++|++++|. ++...+..|..+++|++|++++ |++++..+..+..++
T Consensus 32 ~l~~L~l~~n~l~~i~~~----~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~-- 105 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSH----AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP-- 105 (239)
T ss_dssp TCCEEEEESCCCSEECTT----TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCT--
T ss_pred cccEEEEeCCcceEECHH----HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCC--
Confidence 677777777777653332 46667777777777775 5533334666677777777776 666644444555555
Q ss_pred CCCCCCcEEecCcccC
Q 039460 136 DENGLPFLEQTANRLS 151 (182)
Q Consensus 136 ~~~~L~~l~l~~N~~~ 151 (182)
+|++|++++|.++
T Consensus 106 ---~L~~L~l~~n~l~ 118 (239)
T 2xwt_C 106 ---LLKFLGIFNTGLK 118 (239)
T ss_dssp ---TCCEEEEEEECCC
T ss_pred ---CCCEEeCCCCCCc
Confidence 6666666666655
No 82
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.33 E-value=2.3e-12 Score=92.84 Aligned_cols=112 Identities=22% Similarity=0.214 Sum_probs=91.1
Q ss_pred CCCCCEEECcCCccc-cccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCc
Q 039460 56 FQQLESLDLIGNNIV-GCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDI 134 (182)
Q Consensus 56 l~~L~~L~Ls~n~l~-g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~ 134 (182)
.++|++|++++|.++ +.+|. .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~----~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~- 95 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEG----LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP- 95 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSS----CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT-
T ss_pred cccCCEEECCCCCCChhhHHH----HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC-
Confidence 478999999999998 77887 578899999999999999854 7788999999999999999977888777788
Q ss_pred CCCCCCCcEEecCcccCc----ccccccccC-------CCCccCcCh----hcccccCCC
Q 039460 135 LDENGLPFLEQTANRLSL----ESIDCIQDL-------IYLGGNLPR----KTLQQTKIS 179 (182)
Q Consensus 135 l~~~~L~~l~l~~N~~~~----~~~~~l~~L-------~~l~g~ip~----~l~~l~~L~ 179 (182)
+|++|++++|.+++ ..+..+++| |.+++ +|. .+..+++|+
T Consensus 96 ----~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 96 ----NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLT 150 (168)
T ss_dssp ----TCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCC
T ss_pred ----CCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCc
Confidence 89999999999986 245555555 44554 554 577777765
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.32 E-value=1.6e-12 Score=102.72 Aligned_cols=38 Identities=21% Similarity=0.129 Sum_probs=16.5
Q ss_pred CCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460 85 SNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN 122 (182)
Q Consensus 85 ~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~ 122 (182)
++|++|++++|.+.+..|..|+.+++|++|++++|++.
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC
Confidence 34444444444444333344444444444444444443
No 84
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.31 E-value=5e-12 Score=107.95 Aligned_cols=89 Identities=26% Similarity=0.310 Sum_probs=67.2
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccc-cccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSV-VIKVFW 131 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~-p~~~~~ 131 (182)
+..+++|++|+|++|.++ .+|. .+..+++|++|+|++|.+++ +| .++.+++|++|+|++|++++.. |..++.
T Consensus 459 ~~~l~~L~~L~Ls~N~l~-~lp~----~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~ 531 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLR-ALPP----ALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVS 531 (567)
T ss_dssp GGGGTTCCEEECCSSCCC-CCCG----GGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGG
T ss_pred ccccccCcEeecCccccc-ccch----hhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhc
Confidence 667777888888888877 5676 57777888888888888774 66 6777788888888888887655 777777
Q ss_pred cCcCCCCCCCcEEecCcccCcc
Q 039460 132 FDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
++ +|++|++++|.+++.
T Consensus 532 l~-----~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 532 CP-----RLVLLNLQGNSLCQE 548 (567)
T ss_dssp CT-----TCCEEECTTSGGGGS
T ss_pred CC-----CCCEEEecCCcCCCC
Confidence 77 777888887777643
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.29 E-value=8.6e-12 Score=104.51 Aligned_cols=112 Identities=18% Similarity=0.183 Sum_probs=63.1
Q ss_pred CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhcc-CCCCCCEEEcccccccccccccccccCc
Q 039460 56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLG-GLSSLRCLSLRSNRLNGSVVIKVFWFDI 134 (182)
Q Consensus 56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~-~l~~L~~L~L~~N~l~g~~p~~~~~l~~ 134 (182)
+++|++|++++|.+++..|. .+..+++|++|++++|.+++.+|..+. .+++|++|+|++|.+++. |.. ..++
T Consensus 119 l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~~-~~l~- 191 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDL----DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ-VVFA- 191 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGB----CGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC-CCCT-
T ss_pred cCCCCEEECCCCCCCCCCch----hhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-ccc-ccCC-
Confidence 45566666666666665444 355666666666666666665555554 566666666666666643 222 1233
Q ss_pred CCCCCCCcEEecCcccCcc--cccccccC-------CCCccCcChhcccccCCC
Q 039460 135 LDENGLPFLEQTANRLSLE--SIDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 135 l~~~~L~~l~l~~N~~~~~--~~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
+|++|++++|.+++. .+..+++| |.+++ +|..++.+++|.
T Consensus 192 ----~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~ 240 (487)
T 3oja_A 192 ----KLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLE 240 (487)
T ss_dssp ----TCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCC
T ss_pred ----CCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCC
Confidence 666666666666633 23333333 44554 566555555443
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.29 E-value=1.4e-12 Score=103.00 Aligned_cols=88 Identities=22% Similarity=0.179 Sum_probs=76.1
Q ss_pred CCCCCCEEECcCCccccccCccccccc--CCCCCCcEEEccCCcCCcccchhccCC-----CCCCEEEcccccccccccc
Q 039460 55 PFQQLESLDLIGNNIVGCVENEGLGRL--SRLSNLKFLRLDFNSFNNSIFSSLGGL-----SSLRCLSLRSNRLNGSVVI 127 (182)
Q Consensus 55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~--~~l~~L~~L~L~~n~l~g~~p~~~~~l-----~~L~~L~L~~N~l~g~~p~ 127 (182)
.+++|++|++++|.+++.+|. .+ ..+++|++|++++|.+++. |..++.+ ++|++|++++|++++..|.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~----~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~ 167 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPP----PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCE 167 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCC----CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred CcCCccEEEccCCcccchhHH----HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence 588999999999999998887 45 8899999999999999976 8877776 9999999999999987778
Q ss_pred cccccCcCCCCCCCcEEecCcccCc
Q 039460 128 KVFWFDILDENGLPFLEQTANRLSL 152 (182)
Q Consensus 128 ~~~~l~~l~~~~L~~l~l~~N~~~~ 152 (182)
.++.++ +|++|++++|++.+
T Consensus 168 ~~~~l~-----~L~~L~Ls~N~l~~ 187 (312)
T 1wwl_A 168 QVRVFP-----ALSTLDLSDNPELG 187 (312)
T ss_dssp TCCCCS-----SCCEEECCSCTTCH
T ss_pred HhccCC-----CCCEEECCCCCcCc
Confidence 888887 77777777777654
No 87
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.29 E-value=1.4e-11 Score=101.92 Aligned_cols=102 Identities=23% Similarity=0.184 Sum_probs=86.2
Q ss_pred ccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEE
Q 039460 40 WEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLS 115 (182)
Q Consensus 40 w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~ 115 (182)
|..|.|...+ |..+. +++++|+|++|.+++..|. .|..+++|++|+|++|.+.+..|..|..+++|++|+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~----~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQAD----TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTT----TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHH----HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence 6789998654 33332 6899999999999986666 699999999999999999987778999999999999
Q ss_pred cccccccccccccccccCcCCCCCCCcEEecCcccCc
Q 039460 116 LRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSL 152 (182)
Q Consensus 116 L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~ 152 (182)
|++|++++..+..+..++ +|++|++++|.++.
T Consensus 130 L~~n~l~~~~~~~~~~l~-----~L~~L~L~~N~l~~ 161 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLS-----KLRELWLRNNPIES 161 (452)
T ss_dssp CCSSCCSBCCTTTSSSCT-----TCCEEECCSCCCCE
T ss_pred CCCCcCCccChhhhcccC-----CCCEEECCCCCcce
Confidence 999999965556677777 89999999998883
No 88
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.29 E-value=8.1e-12 Score=107.90 Aligned_cols=120 Identities=18% Similarity=0.133 Sum_probs=95.4
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
+..+..+++|++|++++|.+++ +|.. .|..+++|++|++++|.+.+..|..|+.+++|++|++++|.+++..|..+
T Consensus 66 ~~~~~~l~~L~~L~L~~n~l~~-l~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 141 (680)
T 1ziw_A 66 PELCQKLPMLKVLNLQHNELSQ-LSDK---TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141 (680)
T ss_dssp TTHHHHCTTCCEEECCSSCCCC-CCTT---TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSS
T ss_pred HHHHhcccCcCEEECCCCccCc-cChh---hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhh
Confidence 5567889999999999999986 5542 58999999999999999986666789999999999999999998888888
Q ss_pred cccCcCCCCCCCcEEecCcccCccccc-----ccccC-------CCCccCcChhcccccCC
Q 039460 130 FWFDILDENGLPFLEQTANRLSLESID-----CIQDL-------IYLGGNLPRKTLQQTKI 178 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~~~~~-----~l~~L-------~~l~g~ip~~l~~l~~L 178 (182)
+.++ +|++|++++|.+++.... .+.+| +.+.+..|..+..+.+|
T Consensus 142 ~~l~-----~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 197 (680)
T 1ziw_A 142 VQLE-----NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRL 197 (680)
T ss_dssp SCCT-----TCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEE
T ss_pred cccc-----cCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhh
Confidence 8888 899999999998854221 11233 56666556656655544
No 89
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=9.4e-12 Score=106.24 Aligned_cols=96 Identities=23% Similarity=0.228 Sum_probs=82.9
Q ss_pred CCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCC
Q 039460 58 QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDE 137 (182)
Q Consensus 58 ~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~ 137 (182)
.|++|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..++.+++|++|+|++|.+++ +| .++.++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-----~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~---- 508 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-----LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLP---- 508 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-----GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCS----
T ss_pred CceEEEecCCCCCC-CcC-----ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCC----
Confidence 58899999999997 674 889999999999999999 899999999999999999999996 77 788888
Q ss_pred CCCCcEEecCcccCcc----cccccccC-------CCCccC
Q 039460 138 NGLPFLEQTANRLSLE----SIDCIQDL-------IYLGGN 167 (182)
Q Consensus 138 ~~L~~l~l~~N~~~~~----~~~~l~~L-------~~l~g~ 167 (182)
+|++|++++|.+++. .+..+++| |.+++.
T Consensus 509 -~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 509 -RLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp -SCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred -CCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 999999999999865 34555555 556663
No 90
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.27 E-value=1.7e-11 Score=104.95 Aligned_cols=102 Identities=20% Similarity=0.125 Sum_probs=63.5
Q ss_pred CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460 51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF 130 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~ 130 (182)
..|..+++|++|+|++|.+++..|. .|..+++|++|+|++|.+++..+..|+.+++|++|+|++|.+++..|..+.
T Consensus 93 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 168 (597)
T 3oja_B 93 YAFAYAHTIQKLYMGFNAIRYLPPH----VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTT----TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTT
T ss_pred HHhcCCCCCCEEECCCCcCCCCCHH----HHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhh
Confidence 3566666677777777776664443 456666777777777766633333456666777777777776665555666
Q ss_pred ccCcCCCCCCCcEEecCcccCcccccccccC
Q 039460 131 WFDILDENGLPFLEQTANRLSLESIDCIQDL 161 (182)
Q Consensus 131 ~l~~l~~~~L~~l~l~~N~~~~~~~~~l~~L 161 (182)
.++ +|++|++++|.+++..+..+++|
T Consensus 169 ~l~-----~L~~L~L~~N~l~~~~~~~l~~L 194 (597)
T 3oja_B 169 ATT-----SLQNLQLSSNRLTHVDLSLIPSL 194 (597)
T ss_dssp TCT-----TCCEEECTTSCCSBCCGGGCTTC
T ss_pred cCC-----cCcEEECcCCCCCCcChhhhhhh
Confidence 665 66677777776665555544444
No 91
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.26 E-value=1.1e-11 Score=99.21 Aligned_cols=133 Identities=24% Similarity=0.186 Sum_probs=101.1
Q ss_pred CCCccccceEEcCCC------CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCC
Q 039460 35 SNCCQWEAVEKATYE------CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGL 108 (182)
Q Consensus 35 ~~~c~w~gv~c~~~~------~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l 108 (182)
...|.|.|+ |+... |..+. ++|++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+
T Consensus 27 ~~~C~~~~~-c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (353)
T 2z80_A 27 SLSCDRNGI-CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNS----DLQRCVNLQALVLTSNGINTIEEDSFSSL 99 (353)
T ss_dssp CCEECTTSE-EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTT----TTTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred CCCCCCCeE-eeCCCCCccccccccc--ccCcEEECCCCcCcccCHH----HhccCCCCCEEECCCCccCccCHhhcCCC
Confidence 568999998 65332 33333 5899999999999974443 68999999999999999997777889999
Q ss_pred CCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCcc----cccccccC-------C-CCccCcChhccccc
Q 039460 109 SSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE----SIDCIQDL-------I-YLGGNLPRKTLQQT 176 (182)
Q Consensus 109 ~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L-------~-~l~g~ip~~l~~l~ 176 (182)
++|++|++++|++++..+..+..++ +|++|++++|.++.. .+..+++| | .+....|..++.++
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 174 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLS-----SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCT-----TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCc-----cCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCC
Confidence 9999999999999854344477787 999999999998843 35555665 3 24443345577776
Q ss_pred CCC
Q 039460 177 KIS 179 (182)
Q Consensus 177 ~L~ 179 (182)
+|+
T Consensus 175 ~L~ 177 (353)
T 2z80_A 175 FLE 177 (353)
T ss_dssp EEE
T ss_pred CCC
Confidence 654
No 92
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.26 E-value=1.1e-11 Score=89.97 Aligned_cols=87 Identities=21% Similarity=0.164 Sum_probs=68.2
Q ss_pred ccCCC-CCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccc--cc
Q 039460 53 FTPFQ-QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVI--KV 129 (182)
Q Consensus 53 ~~~l~-~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~--~~ 129 (182)
+..+. +|++|++++|.+++. + .+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|. .+
T Consensus 37 ~~~~~~~L~~L~Ls~N~l~~~-~-----~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l 109 (176)
T 1a9n_A 37 LGATLDQFDAIDFSDNEIRKL-D-----GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPL 109 (176)
T ss_dssp GGGGTTCCSEEECCSSCCCEE-C-----CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGG
T ss_pred hhhcCCCCCEEECCCCCCCcc-c-----ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhh
Confidence 44444 899999999998864 3 4888899999999999988433344578889999999999885 6676 66
Q ss_pred cccCcCCCCCCCcEEecCcccC
Q 039460 130 FWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
..++ +|+++++++|.++
T Consensus 110 ~~l~-----~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 110 ASLK-----SLTYLCILRNPVT 126 (176)
T ss_dssp GGCT-----TCCEEECCSSGGG
T ss_pred hcCC-----CCCEEEecCCCCC
Confidence 6776 8889999999887
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.25 E-value=1.2e-11 Score=97.54 Aligned_cols=96 Identities=19% Similarity=0.111 Sum_probs=58.6
Q ss_pred CCccCCCCCCEEECcCCccccc--cCcccccccCCCCCCcEEEccCCcCCcccch----hccCCCCCCEEEccccccccc
Q 039460 51 SLFTPFQQLESLDLIGNNIVGC--VENEGLGRLSRLSNLKFLRLDFNSFNNSIFS----SLGGLSSLRCLSLRSNRLNGS 124 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~--~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~----~~~~l~~L~~L~L~~N~l~g~ 124 (182)
..+..+++|++|++++|.+.+. ++.. ..+..+++|++|++++|.++ .++. .+..+++|++|+|++|.+++.
T Consensus 163 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 163 EQVRAFPALTSLDLSDNPGLGERGLMAA--LCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp TSCCCCTTCCEEECCSCTTCHHHHHHTT--SCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred HHhccCCCCCEEECCCCCCccchhhhHH--HhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 4555666677777777766542 2110 02345666777777777665 3333 245667777777777777766
Q ss_pred ccccccccCcCCCCCCCcEEecCcccC
Q 039460 125 VVIKVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 125 ~p~~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
+|+.++.+.. ..+|++|++++|.++
T Consensus 240 ~p~~~~~~~~--~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 240 VNPSAPRCMW--SSALNSLNLSFAGLE 264 (310)
T ss_dssp CCSCCSSCCC--CTTCCCEECCSSCCC
T ss_pred chhhHHhccC--cCcCCEEECCCCCCC
Confidence 6766655521 127778888888777
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.25 E-value=7e-12 Score=98.88 Aligned_cols=70 Identities=17% Similarity=-0.002 Sum_probs=40.2
Q ss_pred cCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc
Q 039460 54 TPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG 123 (182)
Q Consensus 54 ~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g 123 (182)
..+++|++|++++|.+++..+......+..+++|++|++++|.+.+..|..|+.+++|++|+|++|++.+
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 183 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLG 183 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCH
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCcc
Confidence 5556666666666666554331000023456666666666666665555666666667777776666554
No 95
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=5.5e-11 Score=86.14 Aligned_cols=92 Identities=20% Similarity=0.158 Sum_probs=76.5
Q ss_pred CCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCC
Q 039460 58 QLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDE 137 (182)
Q Consensus 58 ~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~ 137 (182)
..+++++++|.++. +|. .+ .++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..+..++
T Consensus 10 ~~~~l~~s~n~l~~-ip~----~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~---- 78 (170)
T 3g39_A 10 SGTTVDCSGKSLAS-VPT----GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLT---- 78 (170)
T ss_dssp ETTEEECTTSCCSS-CCS----CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT----
T ss_pred CCCEEEeCCCCcCc-cCc----cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCC----
Confidence 35789999999985 776 34 38899999999999987788999999999999999999965555567787
Q ss_pred CCCCcEEecCcccCcc---cccccccC
Q 039460 138 NGLPFLEQTANRLSLE---SIDCIQDL 161 (182)
Q Consensus 138 ~~L~~l~l~~N~~~~~---~~~~l~~L 161 (182)
+|++|++++|+++.. .+..+.+|
T Consensus 79 -~L~~L~L~~N~l~~~~~~~~~~l~~L 104 (170)
T 3g39_A 79 -QLTQLSLNDNQLKSIPRGAFDNLKSL 104 (170)
T ss_dssp -TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred -CCCEEECCCCccCEeCHHHhcCCCCC
Confidence 999999999999854 35555555
No 96
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.23 E-value=1e-10 Score=92.90 Aligned_cols=89 Identities=27% Similarity=0.235 Sum_probs=58.6
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
+..+..+++|++|++++|.+++..|. .+..+++|++|++++|.+. .+|..+. ++|++|++++|.+++..+..+
T Consensus 71 ~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~ 143 (332)
T 2ft3_A 71 KDDFKGLQHLYALVLVNNKISKIHEK----AFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVF 143 (332)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECGG----GSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGG
T ss_pred HhHhhCCCCCcEEECCCCccCccCHh----HhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHh
Confidence 45678888888888888888876565 5788888888888888876 5665443 566666666666653333334
Q ss_pred cccCcCCCCCCCcEEecCccc
Q 039460 130 FWFDILDENGLPFLEQTANRL 150 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~ 150 (182)
..++ +|++|++++|.+
T Consensus 144 ~~l~-----~L~~L~l~~n~l 159 (332)
T 2ft3_A 144 SGLR-----NMNCIEMGGNPL 159 (332)
T ss_dssp SSCS-----SCCEEECCSCCC
T ss_pred CCCc-----cCCEEECCCCcc
Confidence 4444 444444444444
No 97
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.22 E-value=9e-11 Score=93.05 Aligned_cols=48 Identities=25% Similarity=0.297 Sum_probs=32.6
Q ss_pred CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch
Q 039460 51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS 103 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~ 103 (182)
..+..+++|++|++++|.+++..|. .+..+++|++|++++|.++ .+|.
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~-~l~~ 117 (330)
T 1xku_A 70 GDFKNLKNLHTLILINNKISKISPG----AFAPLVKLERLYLSKNQLK-ELPE 117 (330)
T ss_dssp TTTTTCTTCCEEECCSSCCCCBCTT----TTTTCTTCCEEECCSSCCS-BCCS
T ss_pred hhhccCCCCCEEECCCCcCCeeCHH----HhcCCCCCCEEECCCCcCC-ccCh
Confidence 3567777777777777777765555 4677777777777777665 4443
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.22 E-value=1e-10 Score=91.63 Aligned_cols=85 Identities=26% Similarity=0.307 Sum_probs=43.7
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF 132 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 132 (182)
+..+++|++|++++|.+++ +| .+..+++|++|++++|.+.+ + +.+..+++|++|++++|++++. ..+..+
T Consensus 86 l~~l~~L~~L~l~~n~l~~-~~-----~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l 155 (291)
T 1h6t_A 86 LANLKNLGWLFLDENKVKD-LS-----SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRL 155 (291)
T ss_dssp GTTCTTCCEEECCSSCCCC-GG-----GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred cccCCCCCEEECCCCcCCC-Ch-----hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccC
Confidence 4444555555555555543 22 24555555555555555542 2 2344555555555555555532 334444
Q ss_pred CcCCCCCCCcEEecCcccCc
Q 039460 133 DILDENGLPFLEQTANRLSL 152 (182)
Q Consensus 133 ~~l~~~~L~~l~l~~N~~~~ 152 (182)
+ +|++|++++|.+++
T Consensus 156 ~-----~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 156 T-----KLDTLSLEDNQISD 170 (291)
T ss_dssp T-----TCSEEECCSSCCCC
T ss_pred C-----CCCEEEccCCcccc
Confidence 4 56666666666653
No 99
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.22 E-value=1.5e-11 Score=102.97 Aligned_cols=115 Identities=19% Similarity=0.256 Sum_probs=68.1
Q ss_pred CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC-
Q 039460 57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL- 135 (182)
Q Consensus 57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l- 135 (182)
++|++|+|++|.+++..|. .|..+++|++|+|++|.+++..| +..+++|++|+|++|.+++. |.. ..+..|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~~~-~~L~~L~ 105 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-LVG-PSIETLH 105 (487)
T ss_dssp GGCCEEECCSSCCCCCCGG----GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-EEC-TTCCEEE
T ss_pred CCccEEEeeCCcCCCCCHH----HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-CCC-CCcCEEE
Confidence 3677777777777764444 56777777777777777765444 66777777777777776632 211 000000
Q ss_pred ------------CCCCCCcEEecCcccCcc---cccccccC-------CCCccCcChhcc-cccCCC
Q 039460 136 ------------DENGLPFLEQTANRLSLE---SIDCIQDL-------IYLGGNLPRKTL-QQTKIS 179 (182)
Q Consensus 136 ------------~~~~L~~l~l~~N~~~~~---~~~~l~~L-------~~l~g~ip~~l~-~l~~L~ 179 (182)
...+|+.|++++|.+++. .+..+++| |.+++.+|..+. .+++|+
T Consensus 106 L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLE 172 (487)
T ss_dssp CCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCC
T ss_pred CcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCccc
Confidence 112567777777777744 33444444 566666666654 555554
No 100
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.21 E-value=1.1e-10 Score=92.11 Aligned_cols=84 Identities=24% Similarity=0.385 Sum_probs=45.7
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF 132 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 132 (182)
+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++. +. +..+
T Consensus 81 ~~~l~~L~~L~L~~n~l~~-~~-----~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l 150 (308)
T 1h6u_A 81 LKNLTKITELELSGNPLKN-VS-----AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNI-SP-LAGL 150 (308)
T ss_dssp GTTCCSCCEEECCSCCCSC-CG-----GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GG-GGGC
T ss_pred HccCCCCCEEEccCCcCCC-ch-----hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcC-cc-ccCC
Confidence 5556666666666666654 33 25566666666666666653 332 55566666666666666532 22 3444
Q ss_pred CcCCCCCCCcEEecCcccC
Q 039460 133 DILDENGLPFLEQTANRLS 151 (182)
Q Consensus 133 ~~l~~~~L~~l~l~~N~~~ 151 (182)
+ +|++|++++|.++
T Consensus 151 ~-----~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 151 T-----NLQYLSIGNAQVS 164 (308)
T ss_dssp T-----TCCEEECCSSCCC
T ss_pred C-----CccEEEccCCcCC
Confidence 4 4455555554444
No 101
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.21 E-value=9e-11 Score=85.39 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=75.0
Q ss_pred CCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCC
Q 039460 59 LESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDEN 138 (182)
Q Consensus 59 L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~ 138 (182)
-+.+++++|.++ .+|. .+. ++|++|+|++|.+.+..|..|..+++|++|+|++|++++..+..+..++
T Consensus 14 ~~~l~~~~n~l~-~iP~----~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~----- 81 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPA----GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLT----- 81 (174)
T ss_dssp SSEEECCSSCCS-SCCS----CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT-----
T ss_pred CcEEEeCCCCCC-ccCC----CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcc-----
Confidence 378999999996 5886 343 8999999999999987788999999999999999999964444457777
Q ss_pred CCCcEEecCcccCcc---cccccccC
Q 039460 139 GLPFLEQTANRLSLE---SIDCIQDL 161 (182)
Q Consensus 139 ~L~~l~l~~N~~~~~---~~~~l~~L 161 (182)
+|++|++++|.++.. .+..+++|
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L 107 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSL 107 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hhhEEECCCCccceeCHHHhccccCC
Confidence 999999999999854 24555555
No 102
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.20 E-value=3.9e-11 Score=87.09 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=75.6
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCC-CCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccc-c
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLS-NLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIK-V 129 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~-~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~-~ 129 (182)
.+..+.+|++|++++|.++. +|. +..+. +|++|++++|.+++ + ..+..+++|++|++++|.+++ +|+. +
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-----~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~-~~~~~~ 84 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-----LGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR-IGEGLD 84 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-----GGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE-ECSCHH
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-----hhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccc-cCcchh
Confidence 34556788888888888874 553 44444 88888888888874 3 567788888888888888874 4543 3
Q ss_pred cccCcCCCCCCCcEEecCcccCcc----cccccccC-------CCCccCcChh----cccccCCC
Q 039460 130 FWFDILDENGLPFLEQTANRLSLE----SIDCIQDL-------IYLGGNLPRK----TLQQTKIS 179 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L-------~~l~g~ip~~----l~~l~~L~ 179 (182)
..++ +|++|++++|.++.- .+..+++| |.+. .+|.. +..+++|+
T Consensus 85 ~~l~-----~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~ 143 (176)
T 1a9n_A 85 QALP-----DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVR 143 (176)
T ss_dssp HHCT-----TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCS
T ss_pred hcCC-----CCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccc
Confidence 6677 788888888888621 34444444 3333 35553 56665554
No 103
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.20 E-value=3.7e-11 Score=95.08 Aligned_cols=91 Identities=20% Similarity=0.249 Sum_probs=40.2
Q ss_pred cCCCCCCcEEEccCCcCCcccchhcc-CCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCcc--cccc
Q 039460 81 LSRLSNLKFLRLDFNSFNNSIFSSLG-GLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE--SIDC 157 (182)
Q Consensus 81 ~~~l~~L~~L~L~~n~l~g~~p~~~~-~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~--~~~~ 157 (182)
+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+++ +|... .++ +|++|++++|.++.. .+..
T Consensus 140 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~-~l~-----~L~~L~Ls~N~l~~l~~~~~~ 212 (317)
T 3o53_A 140 EGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQV-VFA-----KLKTLDLSSNKLAFMGPEFQS 212 (317)
T ss_dssp TGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EECCC-CCT-----TCCEEECCSSCCCEECGGGGG
T ss_pred hhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-ccccc-ccc-----cCCEEECCCCcCCcchhhhcc
Confidence 33444444444444444433333332 34444444444444442 22211 122 556666666666522 2333
Q ss_pred cccC-------CCCccCcChhcccccCCC
Q 039460 158 IQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 158 l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
+++| |.+.. +|..+..+++|+
T Consensus 213 l~~L~~L~L~~N~l~~-l~~~~~~l~~L~ 240 (317)
T 3o53_A 213 AAGVTWISLRNNKLVL-IEKALRFSQNLE 240 (317)
T ss_dssp GTTCSEEECTTSCCCE-ECTTCCCCTTCC
T ss_pred cCcccEEECcCCcccc-hhhHhhcCCCCC
Confidence 3333 44443 555555555543
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.19 E-value=1.4e-10 Score=90.83 Aligned_cols=95 Identities=25% Similarity=0.327 Sum_probs=66.2
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
.+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ +| .+..+++|++|++++|.+++ + +.+..
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~-~~~-----l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~ 132 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTD-IKP-----LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVH 132 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGG
T ss_pred hHhcCCCCCEEEccCCccCC-Ccc-----cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcC
Confidence 46667788888888888875 332 6778888888888888764 44 37778888888888888774 3 34556
Q ss_pred cCcCCCCCCCcEEecCcccCcc-cccccccC
Q 039460 132 FDILDENGLPFLEQTANRLSLE-SIDCIQDL 161 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L 161 (182)
++ +|++|++++|.++.. .+..+++|
T Consensus 133 l~-----~L~~L~l~~n~l~~~~~l~~l~~L 158 (291)
T 1h6t_A 133 LP-----QLESLYLGNNKITDITVLSRLTKL 158 (291)
T ss_dssp CT-----TCCEEECCSSCCCCCGGGGGCTTC
T ss_pred CC-----CCCEEEccCCcCCcchhhccCCCC
Confidence 66 778888888877743 34444444
No 105
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.17 E-value=1.8e-10 Score=90.95 Aligned_cols=113 Identities=26% Similarity=0.388 Sum_probs=79.8
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
.+.+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++. +
T Consensus 100 ~~~~~~l~~L~~L~l~~n~l~~-~~~-----l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l 169 (308)
T 1h6u_A 100 VSAIAGLQSIKTLDLTSTQITD-VTP-----LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-L 169 (308)
T ss_dssp CGGGTTCTTCCEEECTTSCCCC-CGG-----GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-G
T ss_pred chhhcCCCCCCEEECCCCCCCC-chh-----hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-h
Confidence 3457778899999999999886 443 7888899999999998874 443 7788888888888888874 444 6
Q ss_pred cccCcCCCCCCCcEEecCcccCcc-cccccccC-------CCCccCcChhcccccCCC
Q 039460 130 FWFDILDENGLPFLEQTANRLSLE-SIDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
..++ +|+.|++++|.+++. .+..+++| |.+++ ++ .+..+++|+
T Consensus 170 ~~l~-----~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~-~~-~l~~l~~L~ 220 (308)
T 1h6u_A 170 ANLS-----KLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD-VS-PLANTSNLF 220 (308)
T ss_dssp TTCT-----TCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCB-CG-GGTTCTTCC
T ss_pred cCCC-----CCCEEECCCCccCcChhhcCCCCCCEEEccCCccCc-cc-cccCCCCCC
Confidence 6666 788888888887744 24444444 44554 33 255555554
No 106
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.17 E-value=2.1e-10 Score=88.63 Aligned_cols=59 Identities=31% Similarity=0.374 Sum_probs=28.0
Q ss_pred CCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCc
Q 039460 85 SNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSL 152 (182)
Q Consensus 85 ~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~ 152 (182)
++|++|++++|.+++ ++ .+..+++|++|++++|++++ +| .+..++ +|++|++++|.+++
T Consensus 106 ~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~-----~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 106 ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKS-IV-MLGFLS-----KLEVLDLHGNEITN 164 (263)
T ss_dssp SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCB-CG-GGGGCT-----TCCEEECTTSCCCB
T ss_pred CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCC-Ch-HHccCC-----CCCEEECCCCcCcc
Confidence 444444444444442 22 34455555555555555543 22 334444 55555555555553
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.17 E-value=1.1e-10 Score=90.28 Aligned_cols=110 Identities=21% Similarity=0.251 Sum_probs=81.0
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
.+..+++|++|++++|.+++ +|. +..+++|++|++++|++++ +|... . ++|++|++++|++++ ++ .+..
T Consensus 58 ~l~~l~~L~~L~L~~N~i~~-~~~-----l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~ 126 (263)
T 1xeu_A 58 GMQFFTNLKELHLSHNQISD-LSP-----LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLFLDNNELRD-TD-SLIH 126 (263)
T ss_dssp TGGGCTTCCEEECCSSCCCC-CGG-----GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEECCSSCCSB-SG-GGTT
T ss_pred HHhhCCCCCEEECCCCccCC-Chh-----hccCCCCCEEECCCCccCC-cCccc-c-CcccEEEccCCccCC-Ch-hhcC
Confidence 57778899999999999886 443 7888999999999999874 55533 3 889999999999885 44 4666
Q ss_pred cCcCCCCCCCcEEecCcccCcc-cccccccC-------CCCccCcChhcccccCCC
Q 039460 132 FDILDENGLPFLEQTANRLSLE-SIDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
++ +|++|++++|++++. .+..+++| |.+++. ..+..+++|+
T Consensus 127 l~-----~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~ 175 (263)
T 1xeu_A 127 LK-----NLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNT--GGLTRLKKVN 175 (263)
T ss_dssp CT-----TCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBC--TTSTTCCCCC
T ss_pred cc-----cccEEECCCCcCCCChHHccCCCCCEEECCCCcCcch--HHhccCCCCC
Confidence 66 899999999998854 34455555 555553 4566666654
No 108
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.17 E-value=2.4e-11 Score=96.19 Aligned_cols=63 Identities=29% Similarity=0.406 Sum_probs=42.0
Q ss_pred CCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccc
Q 039460 55 PFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNG 123 (182)
Q Consensus 55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g 123 (182)
.+++|++|++++|.+++..|. .+..+++|++|++++|.+.+..| +..+++|++|++++|.+++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~ 94 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAA----DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE 94 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHH----HHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE
T ss_pred cCCCCCEEECcCCccCcCCHH----HhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc
Confidence 345677777777777764443 46677777777777777764443 6677777777777777663
No 109
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.15 E-value=2.3e-10 Score=94.91 Aligned_cols=63 Identities=25% Similarity=0.210 Sum_probs=29.4
Q ss_pred cCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCc
Q 039460 81 LSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSL 152 (182)
Q Consensus 81 ~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~ 152 (182)
+..+++|++|++++|.+.+..| +..+++|+.|++++|++++..| +..++ +|+.|++++|.+++
T Consensus 283 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~-----~L~~L~l~~n~l~~ 345 (466)
T 1o6v_A 283 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLT-----KLQRLFFYNNKVSD 345 (466)
T ss_dssp GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCT-----TCCEEECCSSCCCC
T ss_pred ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCc-----cCCEeECCCCccCC
Confidence 3444445555555554443221 4445555555555555554333 33333 45555555555543
No 110
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.14 E-value=3.2e-10 Score=94.29 Aligned_cols=92 Identities=26% Similarity=0.281 Sum_probs=60.7
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
.+..+++|++|++++|.+++ +| +..+++|++|++++|.+++ +| ++.+++|++|++++|++++ +| ++.
T Consensus 59 ~l~~l~~L~~L~Ls~n~l~~-~~------~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~ 125 (457)
T 3bz5_A 59 GIEKLTGLTKLICTSNNITT-LD------LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQ 125 (457)
T ss_dssp TGGGCTTCSEEECCSSCCSC-CC------CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTT
T ss_pred hhcccCCCCEEEccCCcCCe-Ec------cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCC
Confidence 46677777777777777776 32 5667777777777777764 33 6677777777777777764 44 555
Q ss_pred cCcCCCCCCCcEEecCcccCcccccccccC
Q 039460 132 FDILDENGLPFLEQTANRLSLESIDCIQDL 161 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~~~~~~~l~~L 161 (182)
++ +|++|++++|.+++..+..+++|
T Consensus 126 l~-----~L~~L~l~~N~l~~l~l~~l~~L 150 (457)
T 3bz5_A 126 NP-----LLTYLNCARNTLTEIDVSHNTQL 150 (457)
T ss_dssp CT-----TCCEEECTTSCCSCCCCTTCTTC
T ss_pred CC-----cCCEEECCCCccceeccccCCcC
Confidence 55 66677777776665444444433
No 111
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.14 E-value=8.2e-11 Score=89.25 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=67.0
Q ss_pred CCCccCCCCCCEEECcCCc-cccccCcccccccCCCCCCcEEEccC-CcCCcccchhccCCCCCCEEEcccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNN-IVGCVENEGLGRLSRLSNLKFLRLDF-NSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVI 127 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~-l~g~~p~~~~~~~~~l~~L~~L~L~~-n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~ 127 (182)
+..|..+++|++|++++|. ++. ++.. .|..+++|++|++++ |.+++..+..|..+++|++|++++|.+++ +|.
T Consensus 48 ~~~~~~l~~L~~L~l~~n~~l~~-i~~~---~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~ 122 (239)
T 2xwt_C 48 SHAFSNLPNISRIYVSIDVTLQQ-LESH---SFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD 122 (239)
T ss_dssp TTTTTTCTTCCEEEEECCSSCCE-ECTT---TEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC
T ss_pred HHHccCCCCCcEEeCCCCCCcce-eCHh---HcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc
Confidence 3467788999999999997 765 4442 578889999999998 88885555678888999999999998875 665
Q ss_pred cccccCcCCCCCCC---cEEecCc-ccC
Q 039460 128 KVFWFDILDENGLP---FLEQTAN-RLS 151 (182)
Q Consensus 128 ~~~~l~~l~~~~L~---~l~l~~N-~~~ 151 (182)
+..+. +|+ ++++++| .++
T Consensus 123 -~~~l~-----~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 123 -LTKVY-----STDIFFILEITDNPYMT 144 (239)
T ss_dssp -CTTCC-----BCCSEEEEEEESCTTCC
T ss_pred -ccccc-----ccccccEEECCCCcchh
Confidence 55555 333 5555555 444
No 112
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.13 E-value=2.8e-10 Score=97.79 Aligned_cols=110 Identities=25% Similarity=0.280 Sum_probs=64.8
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF 132 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 132 (182)
+..+++|+.|+|++|.+.+ +| .+..+++|+.|+|++|.+.+ + +.+..+++|+.|+|++|.+++. ..+..+
T Consensus 83 l~~l~~L~~L~Ls~N~l~~-l~-----~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l 152 (605)
T 1m9s_A 83 LTNLKNLGWLFLDENKIKD-LS-----SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRL 152 (605)
T ss_dssp GGGCTTCCEEECCSSCCCC-CT-----TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSC
T ss_pred hccCCCCCEEECcCCCCCC-Ch-----hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhccc
Confidence 5555666666666666654 33 26666666667776666663 3 3366666777777777766643 345555
Q ss_pred CcCCCCCCCcEEecCcccCcc-cccccccC-------CCCccCcChhcccccCCC
Q 039460 133 DILDENGLPFLEQTANRLSLE-SIDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 133 ~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
+ +|+.|++++|.+++. .+..+.+| |.+++ + +.+..+++|+
T Consensus 153 ~-----~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~-l-~~l~~l~~L~ 200 (605)
T 1m9s_A 153 T-----KLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD-L-RALAGLKNLD 200 (605)
T ss_dssp T-----TCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB-C-GGGTTCTTCS
T ss_pred C-----CCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC-C-hHHccCCCCC
Confidence 5 777777777777744 24444444 44444 3 3466665554
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.13 E-value=1.5e-10 Score=96.24 Aligned_cols=108 Identities=21% Similarity=0.221 Sum_probs=87.8
Q ss_pred CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccc
Q 039460 51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVF 130 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~ 130 (182)
..+..+++|++|++++|.+++ +|. +..+++|++|++++|.+++ +| ++.+++|++|++++|.+++ +| ++
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~-~~~-----l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~--~~ 103 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITD-MTG-----IEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD--VT 103 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCC-CTT-----GGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC--CT
T ss_pred cChhHcCCCCEEEccCCCccc-Chh-----hcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee--cC
Confidence 346678999999999999997 463 8899999999999999996 45 8899999999999999996 44 67
Q ss_pred ccCcCCCCCCCcEEecCcccCcccccccccC-------CCCccCcChhcccccCC
Q 039460 131 WFDILDENGLPFLEQTANRLSLESIDCIQDL-------IYLGGNLPRKTLQQTKI 178 (182)
Q Consensus 131 ~l~~l~~~~L~~l~l~~N~~~~~~~~~l~~L-------~~l~g~ip~~l~~l~~L 178 (182)
.++ +|++|++++|.+++..+..+++| |.+++ +| ++.+++|
T Consensus 104 ~l~-----~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L 150 (457)
T 3bz5_A 104 PLT-----KLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTE-ID--VSHNTQL 150 (457)
T ss_dssp TCT-----TCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSC-CC--CTTCTTC
T ss_pred CCC-----cCCEEECCCCcCCeecCCCCCcCCEEECCCCccce-ec--cccCCcC
Confidence 777 99999999999997666666666 55665 43 4455444
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.11 E-value=1.4e-10 Score=99.01 Aligned_cols=102 Identities=17% Similarity=0.225 Sum_probs=62.2
Q ss_pred CCCCcCCCCCCCCCCCc-----cccce-EEcCCC--------------CCCccCCCCCCEEECcCCccccccCccccccc
Q 039460 22 LQNWADAANDENYSNCC-----QWEAV-EKATYE--------------CSLFTPFQQLESLDLIGNNIVGCVENEGLGRL 81 (182)
Q Consensus 22 l~~W~~~~~~~~~~~~c-----~w~gv-~c~~~~--------------~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~ 81 (182)
+.+|... ..+| .|.|+ .|.... |..+ +++|++|++++|.|+ .+|.
T Consensus 33 l~~W~~~------~~~~~~~~~~~~~l~~C~~~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~-~ip~------ 97 (571)
T 3cvr_A 33 WDKWEKQ------ALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALI-SLPE------ 97 (571)
T ss_dssp HHHHHTT------CCTTCCHHHHHHHHHHHHHTTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCS-CCCC------
T ss_pred HHHHhcc------CCccccccchhhhccccccCCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCc-cccc------
Confidence 4567654 4677 69998 564321 2222 356777777777776 3552
Q ss_pred CCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCc
Q 039460 82 SRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSL 152 (182)
Q Consensus 82 ~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~ 152 (182)
.+++|++|++++|.+++ +|. +.. +|++|+|++|.+++ +|. .++ +|++|++++|.+++
T Consensus 98 -~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~-----~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 98 -LPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPA-----LLEYINADNNQLTM 154 (571)
T ss_dssp -CCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCT-----TCCEEECCSSCCSC
T ss_pred -ccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCc-----cccEEeCCCCccCc
Confidence 25667777777777764 666 444 67777777777764 555 233 56666666666553
No 115
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.09 E-value=6.6e-10 Score=95.53 Aligned_cols=86 Identities=28% Similarity=0.321 Sum_probs=46.4
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
.+..+++|++|+|++|.+.+ ++ .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+++..| +..
T Consensus 104 ~l~~l~~L~~L~Ls~N~l~~-l~-----~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~ 173 (605)
T 1m9s_A 104 SLKDLKKLKSLSLEHNGISD-IN-----GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAG 173 (605)
T ss_dssp TSTTCTTCCEEECTTSCCCC-CG-----GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTT
T ss_pred hhccCCCCCEEEecCCCCCC-Cc-----cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hcc
Confidence 45555556666666665554 22 255555566666666555532 345555556666666665554333 444
Q ss_pred cCcCCCCCCCcEEecCcccCc
Q 039460 132 FDILDENGLPFLEQTANRLSL 152 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~~ 152 (182)
++ +|+.|++++|.+++
T Consensus 174 l~-----~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 174 LT-----KLQNLYLSKNHISD 189 (605)
T ss_dssp CT-----TCCEEECCSSCCCB
T ss_pred CC-----CCCEEECcCCCCCC
Confidence 44 55556665555553
No 116
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.08 E-value=3.3e-10 Score=90.78 Aligned_cols=103 Identities=13% Similarity=0.073 Sum_probs=79.4
Q ss_pred ccccceEEcCCC----CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch-hccCCCCCC
Q 039460 38 CQWEAVEKATYE----CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS-SLGGLSSLR 112 (182)
Q Consensus 38 c~w~gv~c~~~~----~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~ 112 (182)
|+|..|.|...+ |..+ .+++++|+|++|+|+. +|.. .|..+++|++|+|++|.+.+.+|. .|..+++++
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~-i~~~---~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRV-IQKG---AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp EETTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSE-ECTT---SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred eeCCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCC-cCHH---HHcCCCCCCEEECcCCCCCCccChhHhhcchhhh
Confidence 689999998654 3333 2578999999999985 6652 688999999999999998767765 577888877
Q ss_pred E-EEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460 113 C-LSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 113 ~-L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
. +.+..|++++..|..+..++ +|+++++++|.++
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~-----~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLP-----NLQYLLISNTGIK 117 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCT-----TCCEEEEEEECCS
T ss_pred hhhcccCCcccccCchhhhhcc-----ccccccccccccc
Confidence 5 55667888866677777777 7888888888776
No 117
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=4.5e-10 Score=89.56 Aligned_cols=83 Identities=19% Similarity=0.183 Sum_probs=73.8
Q ss_pred CEEECcCC-ccccccCcccccccCCCCCCcEEEccC-CcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCC
Q 039460 60 ESLDLIGN-NIVGCVENEGLGRLSRLSNLKFLRLDF-NSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDE 137 (182)
Q Consensus 60 ~~L~Ls~n-~l~g~~p~~~~~~~~~l~~L~~L~L~~-n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~ 137 (182)
..++++++ .++. +|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|+|++..|..|..++
T Consensus 11 ~~v~~~~~n~l~~-ip~-----l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~---- 80 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-----LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTP---- 80 (347)
T ss_dssp SCEECCSSCCCTT-TTT-----SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCS----
T ss_pred CEEEcCCCCCCCc-cCC-----CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCc----
Confidence 45799998 8885 774 88899999999996 999977778899999999999999999988888888888
Q ss_pred CCCCcEEecCcccCcc
Q 039460 138 NGLPFLEQTANRLSLE 153 (182)
Q Consensus 138 ~~L~~l~l~~N~~~~~ 153 (182)
+|++|+|++|++++.
T Consensus 81 -~L~~L~l~~N~l~~~ 95 (347)
T 2ifg_A 81 -RLSRLNLSFNALESL 95 (347)
T ss_dssp -CCCEEECCSSCCSCC
T ss_pred -CCCEEeCCCCcccee
Confidence 999999999999854
No 118
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.06 E-value=2.6e-11 Score=96.02 Aligned_cols=90 Identities=19% Similarity=0.124 Sum_probs=57.5
Q ss_pred ccCCCCCCEEECcCCccccc-cCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccc-ccccc-ccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGC-VENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSN-RLNGS-VVIKV 129 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~-~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N-~l~g~-~p~~~ 129 (182)
+..+++|++|++++|.+++. +|. .+..+++|++|++++|.+++..|..++.+++|++|++++| .+++. ++..+
T Consensus 89 ~~~~~~L~~L~L~~~~l~~~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~ 164 (336)
T 2ast_B 89 HFSPFRVQHMDLSNSVIEVSTLHG----ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 164 (336)
T ss_dssp CCCCBCCCEEECTTCEECHHHHHH----HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHH
T ss_pred hccCCCCCEEEccCCCcCHHHHHH----HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHH
Confidence 44567777777777777654 554 4666777777777777776666677777777777777777 55542 45545
Q ss_pred cccCcCCCCCCCcEEecCc-ccC
Q 039460 130 FWFDILDENGLPFLEQTAN-RLS 151 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N-~~~ 151 (182)
..++ +|++|++++| .++
T Consensus 165 ~~~~-----~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 165 SSCS-----RLDELNLSWCFDFT 182 (336)
T ss_dssp HHCT-----TCCEEECCCCTTCC
T ss_pred hcCC-----CCCEEcCCCCCCcC
Confidence 5555 4555555555 444
No 119
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.06 E-value=7.3e-13 Score=98.12 Aligned_cols=96 Identities=21% Similarity=0.241 Sum_probs=74.4
Q ss_pred CccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 52 LFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 52 ~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
.+..+++|++|++++|.+++ +|. +..+++|++|++++|.+. .+|..+..+++|++|++++|++++ +| .+..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~~-----~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-ISS-----LSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CCC-----HHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-ccc-----cccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-cccc
Confidence 57778899999999999886 663 778888999999999887 678777777888999999888875 55 5666
Q ss_pred cCcCCCCCCCcEEecCcccCcc----cccccccC
Q 039460 132 FDILDENGLPFLEQTANRLSLE----SIDCIQDL 161 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~~~----~~~~l~~L 161 (182)
++ +|++|++++|.++.. .+..+++|
T Consensus 114 l~-----~L~~L~l~~N~i~~~~~~~~l~~l~~L 142 (198)
T 1ds9_A 114 LV-----NLRVLYMSNNKITNWGEIDKLAALDKL 142 (198)
T ss_dssp HH-----HSSEEEESEEECCCHHHHHHHTTTTTC
T ss_pred CC-----CCCEEECCCCcCCchhHHHHHhcCCCC
Confidence 66 788888888888742 34444544
No 120
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.05 E-value=1.3e-09 Score=90.42 Aligned_cols=94 Identities=31% Similarity=0.412 Sum_probs=54.6
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF 132 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 132 (182)
+..+++|++|++++|.+++. ++ +..+++|++|++++|.+.+ ++. +..+++|+.|++++|++++..| +..+
T Consensus 239 l~~l~~L~~L~l~~n~l~~~-~~-----~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l 308 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNL-AP-----LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISP--ISNL 308 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCC-GG-----GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGG--GGGC
T ss_pred hhcCCCCCEEECCCCccccc-hh-----hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEEcCCCcccCchh--hcCC
Confidence 44455556666666655542 21 4556666666666666663 333 5666667777777666664322 4455
Q ss_pred CcCCCCCCCcEEecCcccCccc-ccccccC
Q 039460 133 DILDENGLPFLEQTANRLSLES-IDCIQDL 161 (182)
Q Consensus 133 ~~l~~~~L~~l~l~~N~~~~~~-~~~l~~L 161 (182)
+ +|++|++++|.+++.. +..+++|
T Consensus 309 ~-----~L~~L~L~~n~l~~~~~~~~l~~L 333 (466)
T 1o6v_A 309 K-----NLTYLTLYFNNISDISPVSSLTKL 333 (466)
T ss_dssp T-----TCSEEECCSSCCSCCGGGGGCTTC
T ss_pred C-----CCCEEECcCCcCCCchhhccCccC
Confidence 5 7778888888777542 3344444
No 121
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.05 E-value=1.2e-09 Score=86.78 Aligned_cols=110 Identities=24% Similarity=0.342 Sum_probs=67.4
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF 132 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 132 (182)
+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ + +.+..+++|++|++++|.+++ +| .+..+
T Consensus 217 ~~~~~~L~~L~l~~n~l~~-~~~-----~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~-~~-~~~~l 286 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITD-LSP-----LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISD-IS-VLNNL 286 (347)
T ss_dssp GGGCTTCCEEECCSSCCCC-CGG-----GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCC-CG-GGGGC
T ss_pred hhcCCcCCEEEccCCccCC-Ccc-----hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCC-Ch-hhcCC
Confidence 4556667777777776664 332 5667777777777777763 3 346677777777777777764 32 35555
Q ss_pred CcCCCCCCCcEEecCcccCccc---ccccccC-------CCCccCcChhcccccCCC
Q 039460 133 DILDENGLPFLEQTANRLSLES---IDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 133 ~~l~~~~L~~l~l~~N~~~~~~---~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
+ +|++|++++|.++... +..+++| |.+++..| +..+++|+
T Consensus 287 ~-----~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 287 S-----QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp T-----TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred C-----CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 5 7778888887777442 3444444 45555333 55555543
No 122
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.02 E-value=1.3e-09 Score=90.47 Aligned_cols=79 Identities=23% Similarity=0.227 Sum_probs=45.8
Q ss_pred CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCC
Q 039460 57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILD 136 (182)
Q Consensus 57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~ 136 (182)
++|++|++++|.+++ +|. +..+++|++|++++|++++ +|..+ .+|++|++++|++++ +| .++.++
T Consensus 131 ~~L~~L~L~~n~l~~-lp~-----~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~--- 195 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LPE-----LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLP--- 195 (454)
T ss_dssp TTCCEEECCSSCCSS-CCC-----CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCT---
T ss_pred CCCCEEECcCCCCCC-Ccc-----cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCC---
Confidence 356666666666654 542 5666666666666666653 44432 356666666666654 44 355555
Q ss_pred CCCCCcEEecCcccCc
Q 039460 137 ENGLPFLEQTANRLSL 152 (182)
Q Consensus 137 ~~~L~~l~l~~N~~~~ 152 (182)
+|+++++++|.+++
T Consensus 196 --~L~~L~l~~N~l~~ 209 (454)
T 1jl5_A 196 --FLTAIYADNNSLKK 209 (454)
T ss_dssp --TCCEEECCSSCCSS
T ss_pred --CCCEEECCCCcCCc
Confidence 56666666666653
No 123
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.00 E-value=4.8e-10 Score=89.19 Aligned_cols=96 Identities=24% Similarity=0.317 Sum_probs=81.5
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWF 132 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l 132 (182)
+..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ + +.+..+++|+.|++++|.+++..|..+..+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~-~~-----~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l 310 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISD-IN-----AVKDLTKLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310 (347)
T ss_dssp GTTCTTCCEEECCSSCCCC-CG-----GGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTC
T ss_pred hhcCCCCCEEECCCCccCC-Ch-----hHhcCCCcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCCCcChhHhhcc
Confidence 7789999999999999986 44 48899999999999999985 4 458899999999999999998888888888
Q ss_pred CcCCCCCCCcEEecCcccCccc-ccccccC
Q 039460 133 DILDENGLPFLEQTANRLSLES-IDCIQDL 161 (182)
Q Consensus 133 ~~l~~~~L~~l~l~~N~~~~~~-~~~l~~L 161 (182)
+ +|+++++++|.+++.. +..+++|
T Consensus 311 ~-----~L~~L~L~~n~l~~~~~~~~l~~L 335 (347)
T 4fmz_A 311 T-----NLTTLFLSQNHITDIRPLASLSKM 335 (347)
T ss_dssp T-----TCSEEECCSSSCCCCGGGGGCTTC
T ss_pred c-----cCCEEEccCCccccccChhhhhcc
Confidence 8 9999999999998652 3444444
No 124
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.98 E-value=1.6e-10 Score=91.42 Aligned_cols=113 Identities=15% Similarity=0.072 Sum_probs=90.0
Q ss_pred CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcc-cchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460 57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS-IFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL 135 (182)
Q Consensus 57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~-~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l 135 (182)
+.++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..|..+..++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-----~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~-- 142 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-----HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS-- 142 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-----CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT--
T ss_pred ccceEEEcCCccccccchh-----hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC--
Confidence 7899999999999987664 67899999999999999866 888899999999999999999988888888887
Q ss_pred CCCCCCcEEecCc-ccCcc----cccccccC-------C-CCccC-cChhccccc-CCC
Q 039460 136 DENGLPFLEQTAN-RLSLE----SIDCIQDL-------I-YLGGN-LPRKTLQQT-KIS 179 (182)
Q Consensus 136 ~~~~L~~l~l~~N-~~~~~----~~~~l~~L-------~-~l~g~-ip~~l~~l~-~L~ 179 (182)
+|++|++++| .+++. .+..+++| + .+++. +|..+..++ +|+
T Consensus 143 ---~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 143 ---NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp ---TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred ---CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 9999999999 67743 24445555 2 33322 455555555 543
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.97 E-value=7.4e-12 Score=92.65 Aligned_cols=117 Identities=22% Similarity=0.173 Sum_probs=88.4
Q ss_pred cCCCCCCEEECcCCccccccCcc--cccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccc
Q 039460 54 TPFQQLESLDLIGNNIVGCVENE--GLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 54 ~~l~~L~~L~Ls~n~l~g~~p~~--~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
.....++.++++.+.++|.+|.- +...+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 34567888888889998887740 00037788999999999999985 77 8889999999999999998 78888877
Q ss_pred cCcCCCCCCCcEEecCcccCcc-cccccccC-------CCCccCcCh--hcccccCCC
Q 039460 132 FDILDENGLPFLEQTANRLSLE-SIDCIQDL-------IYLGGNLPR--KTLQQTKIS 179 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~~~~~-~~~~l~~L-------~~l~g~ip~--~l~~l~~L~ 179 (182)
++ +|++|++++|.+++. .+..+++| |.+.+ +|. .+..+++|+
T Consensus 92 ~~-----~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~ 143 (198)
T 1ds9_A 92 AD-----TLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITN-WGEIDKLAALDKLE 143 (198)
T ss_dssp HH-----HCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCC-HHHHHHHTTTTTCS
T ss_pred CC-----cCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCc-hhHHHHHhcCCCCC
Confidence 77 899999999999853 33444444 34443 343 566666665
No 126
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.94 E-value=1e-10 Score=94.70 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=6.5
Q ss_pred CCCCCEEECcCCccc
Q 039460 56 FQQLESLDLIGNNIV 70 (182)
Q Consensus 56 l~~L~~L~Ls~n~l~ 70 (182)
+++|++|+|++|.+.
T Consensus 93 ~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFG 107 (386)
T ss_dssp CTTCCEEECCSCCCC
T ss_pred CCcccEEECCCCcCC
Confidence 344444444444443
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=98.89 E-value=2.5e-09 Score=88.82 Aligned_cols=54 Identities=22% Similarity=0.095 Sum_probs=25.3
Q ss_pred CCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCc
Q 039460 86 NLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSL 152 (182)
Q Consensus 86 ~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~ 152 (182)
+|++|++++|++.+ +|.. +++|++|++++|+++ .+|. .++ +|+++++++|.+++
T Consensus 318 ~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~-----~L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 318 SLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQ-----NLKQLHVEYNPLRE 371 (454)
T ss_dssp TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCT-----TCCEEECCSSCCSS
T ss_pred cCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhh-----hccEEECCCCCCCc
Confidence 45555555555543 4432 244555555555554 3443 122 44555555555443
No 128
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.88 E-value=1.7e-10 Score=89.70 Aligned_cols=80 Identities=23% Similarity=0.194 Sum_probs=62.9
Q ss_pred CCCCCCcEEEccCCcCCc--ccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCcc------
Q 039460 82 SRLSNLKFLRLDFNSFNN--SIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE------ 153 (182)
Q Consensus 82 ~~l~~L~~L~L~~n~l~g--~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~------ 153 (182)
..+++|+.|+|++|++++ .+|..+..+++|+.|+|++|++++. ..+..+..+ +|++|++.+|.+++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l---~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGL---KLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTS---CCSEEECTTSTTGGGCSSHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccC---CcceEEccCCcCccccCcchh
Confidence 357899999999999997 5667788899999999999999854 344444432 799999999999862
Q ss_pred ----cccccccCCCCcc
Q 039460 154 ----SIDCIQDLIYLGG 166 (182)
Q Consensus 154 ----~~~~l~~L~~l~g 166 (182)
.+..+++|..|.|
T Consensus 242 y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 242 YISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHHCTTCCEESS
T ss_pred HHHHHHHHCcccCeECC
Confidence 3566777776766
No 129
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.87 E-value=8.8e-10 Score=89.20 Aligned_cols=91 Identities=27% Similarity=0.327 Sum_probs=50.4
Q ss_pred ccCCCCCCEEECcCCccc--c---ccCcccccccCCCCCCcEEEccCCcCC----cccchhccCCCCCCEEEcccccccc
Q 039460 53 FTPFQQLESLDLIGNNIV--G---CVENEGLGRLSRLSNLKFLRLDFNSFN----NSIFSSLGGLSSLRCLSLRSNRLNG 123 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~--g---~~p~~~~~~~~~l~~L~~L~L~~n~l~----g~~p~~~~~l~~L~~L~L~~N~l~g 123 (182)
+..+++|++|++++|.++ | .+|. .+..+++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~----~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLE----GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHT----TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHH----HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 334556666666666665 2 2221 2555666666666666664 4555556666666666666666654
Q ss_pred c----ccccccc--cCcCCCCCCCcEEecCcccCc
Q 039460 124 S----VVIKVFW--FDILDENGLPFLEQTANRLSL 152 (182)
Q Consensus 124 ~----~p~~~~~--l~~l~~~~L~~l~l~~N~~~~ 152 (182)
. +|..+.. ++ +|++|++++|.++.
T Consensus 259 ~~~~~l~~~l~~~~~~-----~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENI-----GLQTLRLQYNEIEL 288 (386)
T ss_dssp HHHHHHHHHHHTCSSC-----CCCEEECCSSCCBH
T ss_pred hhHHHHHHHHhhccCC-----CeEEEECcCCcCCH
Confidence 3 3333321 33 56666666666654
No 130
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.82 E-value=7.8e-09 Score=82.77 Aligned_cols=74 Identities=18% Similarity=0.222 Sum_probs=61.7
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcE-EEccCCcCCcccchhccCCCCCCEEEccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKF-LRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVV 126 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~-L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p 126 (182)
+..|..+++|++|+|++|.+.+.+|.. .|..+++++. +.+..|++....|..|..+++|++|++++|++++..+
T Consensus 47 ~~~f~~l~~L~~L~Ls~N~i~~~i~~~---~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~ 121 (350)
T 4ay9_X 47 KGAFSGFGDLEKIEISQNDVLEVIEAD---VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD 121 (350)
T ss_dssp TTSSTTCTTCCEEEEECCTTCCEECTT---SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC
T ss_pred HHHHcCCCCCCEEECcCCCCCCccChh---HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCc
Confidence 457899999999999999998888863 6788888776 5667799986667789999999999999999985433
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.79 E-value=4.7e-09 Score=89.63 Aligned_cols=104 Identities=21% Similarity=0.172 Sum_probs=57.9
Q ss_pred CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcC
Q 039460 56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDIL 135 (182)
Q Consensus 56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l 135 (182)
+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. |. ++|++|+|++|+++ .+|. +.. . |
T Consensus 139 l~~L~~L~Ls~N~l~~-lp~-------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~-~-L 202 (571)
T 3cvr_A 139 PALLEYINADNNQLTM-LPE-------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV-R-N 202 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC-----
T ss_pred CccccEEeCCCCccCc-CCC-------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH-h-h
Confidence 4556666666666654 442 35677777777777774 666 54 67777777777776 5665 322 0 0
Q ss_pred --CCCCCCcEEecCcccCcc--cccccccC-------CCCccCcChhcccc
Q 039460 136 --DENGLPFLEQTANRLSLE--SIDCIQDL-------IYLGGNLPRKTLQQ 175 (182)
Q Consensus 136 --~~~~L~~l~l~~N~~~~~--~~~~l~~L-------~~l~g~ip~~l~~l 175 (182)
....|++|++++|.++.- .+..+++| |.+++.+|..++.+
T Consensus 203 ~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 203 HHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -----CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 001126666666666621 22333333 55555566555544
No 132
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.79 E-value=9.6e-09 Score=88.57 Aligned_cols=84 Identities=23% Similarity=0.210 Sum_probs=59.1
Q ss_pred CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcccccccccccccccccCcCC
Q 039460 57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILD 136 (182)
Q Consensus 57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~ 136 (182)
++|++|++++|.+++ +|. .+++|+.|++++|.++ .+|. .+++|+.|+|++|+++ .+|..+..++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp~-------~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~--- 284 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LPV-------LPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLS--- 284 (622)
T ss_dssp TTCCEEECCSSCCSC-CCC-------CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSC---
T ss_pred CCCCEEEccCCccCc-CCC-------CCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcc---
Confidence 456666666666664 442 3466777777777776 5665 5677888888888887 7787777777
Q ss_pred CCCCCcEEecCcccCccccccc
Q 039460 137 ENGLPFLEQTANRLSLESIDCI 158 (182)
Q Consensus 137 ~~~L~~l~l~~N~~~~~~~~~l 158 (182)
+|+.|++++|.+++..+..+
T Consensus 285 --~L~~L~L~~N~l~~~~~~~l 304 (622)
T 3g06_A 285 --SETTVNLEGNPLSERTLQAL 304 (622)
T ss_dssp --TTCEEECCSCCCCHHHHHHH
T ss_pred --ccCEEEecCCCCCCcCHHHH
Confidence 88888888888886644433
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.79 E-value=9e-10 Score=88.59 Aligned_cols=94 Identities=20% Similarity=0.187 Sum_probs=45.5
Q ss_pred ccCCC-CCCEEECcCCccccccCcccccccCCC-----CCCcEEEccCCcCCcccchhcc----CC-CCCCEEEcccccc
Q 039460 53 FTPFQ-QLESLDLIGNNIVGCVENEGLGRLSRL-----SNLKFLRLDFNSFNNSIFSSLG----GL-SSLRCLSLRSNRL 121 (182)
Q Consensus 53 ~~~l~-~L~~L~Ls~n~l~g~~p~~~~~~~~~l-----~~L~~L~L~~n~l~g~~p~~~~----~l-~~L~~L~L~~N~l 121 (182)
+..++ +|++|++++|.+++..+. .+..+ ++|++|++++|.+++..+..+. .+ ++|++|++++|.+
T Consensus 46 l~~~~~~L~~L~Ls~N~l~~~~~~----~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 121 (362)
T 3goz_A 46 FANTPASVTSLNLSGNSLGFKNSD----ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121 (362)
T ss_dssp HHTCCTTCCEEECCSSCGGGSCHH----HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HHhCCCceeEEECcCCCCCHHHHH----HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC
Confidence 33445 566666666666554332 23332 5666666666666544444322 22 5666666666666
Q ss_pred ccccccccccc-CcCCCCCCCcEEecCcccC
Q 039460 122 NGSVVIKVFWF-DILDENGLPFLEQTANRLS 151 (182)
Q Consensus 122 ~g~~p~~~~~l-~~l~~~~L~~l~l~~N~~~ 151 (182)
++..+..+... ..+ ..+|++|++++|.++
T Consensus 122 ~~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~ 151 (362)
T 3goz_A 122 SSKSSSEFKQAFSNL-PASITSLNLRGNDLG 151 (362)
T ss_dssp GGSCHHHHHHHHTTS-CTTCCEEECTTSCGG
T ss_pred CcHHHHHHHHHHHhC-CCceeEEEccCCcCC
Confidence 54433332221 000 014555555555555
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=98.76 E-value=4e-08 Score=84.72 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=20.9
Q ss_pred CCCcEEecCcccCcccccccccC-------CCCccCcChhcccccCCC
Q 039460 139 GLPFLEQTANRLSLESIDCIQDL-------IYLGGNLPRKTLQQTKIS 179 (182)
Q Consensus 139 ~L~~l~l~~N~~~~~~~~~l~~L-------~~l~g~ip~~l~~l~~L~ 179 (182)
+|++|++++|.++.-. ..+.+| |.++ .||..+.++++|+
T Consensus 242 ~L~~L~Ls~N~L~~lp-~~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~ 287 (622)
T 3g06_A 242 ELKELMVSGNRLTSLP-MLPSGLLSLSVYRNQLT-RLPESLIHLSSET 287 (622)
T ss_dssp TCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCC-SCCGGGGGSCTTC
T ss_pred cCcEEECCCCCCCcCC-cccccCcEEeCCCCCCC-cCCHHHhhccccC
Confidence 4556666666555211 122222 5555 5777777777664
No 135
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.66 E-value=9.1e-09 Score=82.67 Aligned_cols=98 Identities=19% Similarity=0.112 Sum_probs=74.1
Q ss_pred CCCCCCEEECcCCccccccCcccccccCCCC-CCcEEEccCCcCCcccchhccCC-----CCCCEEEccccccccccccc
Q 039460 55 PFQQLESLDLIGNNIVGCVENEGLGRLSRLS-NLKFLRLDFNSFNNSIFSSLGGL-----SSLRCLSLRSNRLNGSVVIK 128 (182)
Q Consensus 55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~-~L~~L~L~~n~l~g~~p~~~~~l-----~~L~~L~L~~N~l~g~~p~~ 128 (182)
..++|++|++++|.+++..+......+..++ +|++|+|++|.+++..+..+..+ ++|++|+|++|.+++..+..
T Consensus 20 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 20 IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 3456999999999998754411001577788 89999999999997777777665 99999999999999777765
Q ss_pred cccc-CcCCCCCCCcEEecCcccCcc
Q 039460 129 VFWF-DILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 129 ~~~l-~~l~~~~L~~l~l~~N~~~~~ 153 (182)
+... ..+ ..+|++|++++|.++..
T Consensus 100 l~~~l~~~-~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 100 LVKTLAAI-PFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHHHHHTS-CTTCCEEECCSSCGGGS
T ss_pred HHHHHHhC-CCCccEEECcCCcCCcH
Confidence 5443 100 02899999999999855
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.63 E-value=1.8e-09 Score=88.90 Aligned_cols=13 Identities=38% Similarity=0.266 Sum_probs=6.7
Q ss_pred CCCcEEecCcccC
Q 039460 139 GLPFLEQTANRLS 151 (182)
Q Consensus 139 ~L~~l~l~~N~~~ 151 (182)
+|++|++++|.++
T Consensus 342 ~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 342 FLLELQISNNRLE 354 (461)
T ss_dssp SCCEEECCSSBCH
T ss_pred CccEEEccCCccc
Confidence 4555555555444
No 137
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.59 E-value=3.7e-08 Score=76.45 Aligned_cols=79 Identities=25% Similarity=0.246 Sum_probs=61.5
Q ss_pred CCCCCCEEECcCCcccc--ccCcccccccCCCCCCcEEEccCCcCCcccchhccCCC--CCCEEEcccccccccccc---
Q 039460 55 PFQQLESLDLIGNNIVG--CVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLS--SLRCLSLRSNRLNGSVVI--- 127 (182)
Q Consensus 55 ~l~~L~~L~Ls~n~l~g--~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~--~L~~L~L~~N~l~g~~p~--- 127 (182)
.+++|++|+|++|.|++ .+|. .+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|.+.+.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~----~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~ 241 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSS----IVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQST 241 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTT----HHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHH
T ss_pred hCCCCCEEECCCCCCCCCccchh----HHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchh
Confidence 47899999999999998 4554 456899999999999999854 3344444 999999999999987773
Q ss_pred ----cccccCcCCCCCCCcEE
Q 039460 128 ----KVFWFDILDENGLPFLE 144 (182)
Q Consensus 128 ----~~~~l~~l~~~~L~~l~ 144 (182)
.+..++ +|+.|+
T Consensus 242 y~~~il~~~P-----~L~~LD 257 (267)
T 3rw6_A 242 YISAIRERFP-----KLLRLD 257 (267)
T ss_dssp HHHHHHHHCT-----TCCEES
T ss_pred HHHHHHHHCc-----ccCeEC
Confidence 245556 676664
No 138
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.57 E-value=4.7e-09 Score=86.37 Aligned_cols=71 Identities=24% Similarity=0.183 Sum_probs=33.8
Q ss_pred ccCCCCCCEEECcCCccccccCccccccc-CCCCCCcEEEccCCcCCcc----cchhccCCCCCCEEEcccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRL-SRLSNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLRSNRLNG 123 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~-~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~g 123 (182)
+..+++|++|++++|.+.+..+......+ ...++|++|++++|.+++. ++..+..+++|++|++++|.+++
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 33466777777777766543221000001 1123555555555555433 33444445555555555555543
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.23 E-value=7.2e-07 Score=75.47 Aligned_cols=82 Identities=10% Similarity=0.030 Sum_probs=50.7
Q ss_pred CCCCCCEEECcCCccccc----cCcccccccCCCCCCcEEEccCCcCC----cccchhccCCCCCCEEEccccccccccc
Q 039460 55 PFQQLESLDLIGNNIVGC----VENEGLGRLSRLSNLKFLRLDFNSFN----NSIFSSLGGLSSLRCLSLRSNRLNGSVV 126 (182)
Q Consensus 55 ~l~~L~~L~Ls~n~l~g~----~p~~~~~~~~~l~~L~~L~L~~n~l~----g~~p~~~~~l~~L~~L~L~~N~l~g~~p 126 (182)
.+++|++|++++|.+++. ++. .+..+++|++|++++|.++ +.++..+..+++|+.|++++|.+.+ +|
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~----~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~ 236 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHE----LAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV 236 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHH----HHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH
T ss_pred hCCCCCEEECccccccCcchhHHHH----HHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH
Confidence 456777777777776543 222 2345667777777777765 3344455567777777777777663 55
Q ss_pred ccccccCcCCCCCCCcEEec
Q 039460 127 IKVFWFDILDENGLPFLEQT 146 (182)
Q Consensus 127 ~~~~~l~~l~~~~L~~l~l~ 146 (182)
..+..++ +|+.++++
T Consensus 237 ~~~~~~~-----~L~~L~l~ 251 (592)
T 3ogk_B 237 GFFKAAA-----NLEEFCGG 251 (592)
T ss_dssp HHHHHCT-----TCCEEEEC
T ss_pred HHHhhhh-----HHHhhccc
Confidence 5555555 56666654
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.20 E-value=4.7e-07 Score=73.34 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=29.9
Q ss_pred CCCCCCcEEEccCCcCCcc----cchhccCCCCCCEEEccccccccc----ccccccccCcCCCCCCCcEEecCcccC
Q 039460 82 SRLSNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLRSNRLNGS----VVIKVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 82 ~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~----~p~~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
...++|++|+|++|.++.. ++..+...++|++|+|++|.++.. +...+...+ +|++|++++|.++
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~-----~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHP-----SLELLHLYFNELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCS-----SCCEEECTTSSCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCC-----CCCEEeccCCCCC
Confidence 3444555555555554321 233344444555555555555421 122222223 5556666666555
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.20 E-value=4.1e-06 Score=66.20 Aligned_cols=85 Identities=16% Similarity=0.207 Sum_probs=69.3
Q ss_pred CCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCC-EEEcccccccccccccccccCc
Q 039460 56 FQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLR-CLSLRSNRLNGSVVIKVFWFDI 134 (182)
Q Consensus 56 l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~-~L~L~~N~l~g~~p~~~~~l~~ 134 (182)
+++|+++++++|.++ .+|.. .|..+.+|+.++++.| +...-+..|..+++|+ .+++.. .++..-+..|..+.
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~---aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~- 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDF---TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCD- 297 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTT---TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCT-
T ss_pred cCCCeEEECCCCCcc-eecHh---hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCc-
Confidence 789999999999988 47763 7899999999999998 7633345789999999 999988 66644456777777
Q ss_pred CCCCCCCcEEecCcccC
Q 039460 135 LDENGLPFLEQTANRLS 151 (182)
Q Consensus 135 l~~~~L~~l~l~~N~~~ 151 (182)
+|+.+++.+|.++
T Consensus 298 ----~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 298 ----NLRYVLATGDKIT 310 (329)
T ss_dssp ----TEEEEEECSSCCC
T ss_pred ----cCCEEEeCCCccC
Confidence 8999999888776
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.18 E-value=3.7e-07 Score=77.25 Aligned_cols=90 Identities=13% Similarity=0.190 Sum_probs=61.5
Q ss_pred CCCCCCEEECcCCc--cccccCccccccc-CCCCCCcEEEccCCcCCc-ccchhccCCCCCCEEEccccccccc-ccccc
Q 039460 55 PFQQLESLDLIGNN--IVGCVENEGLGRL-SRLSNLKFLRLDFNSFNN-SIFSSLGGLSSLRCLSLRSNRLNGS-VVIKV 129 (182)
Q Consensus 55 ~l~~L~~L~Ls~n~--l~g~~p~~~~~~~-~~l~~L~~L~L~~n~l~g-~~p~~~~~l~~L~~L~L~~N~l~g~-~p~~~ 129 (182)
.+++|++|+++++. +++..+. .+ ..+++|++|++++|.+++ .++..+..+++|++|++++|.+++. ++..+
T Consensus 434 ~~~~L~~L~L~~~~~~l~~~~~~----~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 509 (592)
T 3ogk_B 434 GCKKLRRFAFYLRQGGLTDLGLS----YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509 (592)
T ss_dssp HCTTCCEEEEECCGGGCCHHHHH----HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHH
T ss_pred hCCCCCEEEEecCCCCccHHHHH----HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHH
Confidence 35666666665422 4433322 12 237788899998888875 3455667888999999999988754 34444
Q ss_pred cccCcCCCCCCCcEEecCcccCcc
Q 039460 130 FWFDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
..++ +|++|++++|+++..
T Consensus 510 ~~l~-----~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 510 TKLP-----SLRYLWVQGYRASMT 528 (592)
T ss_dssp HHCS-----SCCEEEEESCBCCTT
T ss_pred HhcC-----ccCeeECcCCcCCHH
Confidence 5566 889999999998865
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.02 E-value=1.1e-06 Score=71.12 Aligned_cols=92 Identities=21% Similarity=0.151 Sum_probs=54.7
Q ss_pred CCCCCEEECcCCccccccCccccccc-CCCCCCcEEEccCCcCCc----ccchhccCCCCCCEEEccccccccc----cc
Q 039460 56 FQQLESLDLIGNNIVGCVENEGLGRL-SRLSNLKFLRLDFNSFNN----SIFSSLGGLSSLRCLSLRSNRLNGS----VV 126 (182)
Q Consensus 56 l~~L~~L~Ls~n~l~g~~p~~~~~~~-~~l~~L~~L~L~~n~l~g----~~p~~~~~l~~L~~L~L~~N~l~g~----~p 126 (182)
+++|++|+|++|.++..-...+...+ ...++|++|+|++|.++. .++..+..+++|++|+|++|.++.. ++
T Consensus 125 L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~ 204 (372)
T 3un9_A 125 FLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA 204 (372)
T ss_dssp HHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH
T ss_pred HHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH
Confidence 34566666666666532111000011 235677888888887753 2344456677788888888887632 23
Q ss_pred ccccccCcCCCCCCCcEEecCcccCc
Q 039460 127 IKVFWFDILDENGLPFLEQTANRLSL 152 (182)
Q Consensus 127 ~~~~~l~~l~~~~L~~l~l~~N~~~~ 152 (182)
..+...+ +|++|++++|.++.
T Consensus 205 ~~L~~~~-----~L~~L~Ls~N~i~~ 225 (372)
T 3un9_A 205 AQLDRNR-----QLQELNVAYNGAGD 225 (372)
T ss_dssp HHGGGCS-----CCCEEECCSSCCCH
T ss_pred HHHhcCC-----CcCeEECCCCCCCH
Confidence 3444444 78888888888874
No 144
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.01 E-value=2.4e-06 Score=62.38 Aligned_cols=96 Identities=20% Similarity=0.092 Sum_probs=64.2
Q ss_pred ccCCCCCCEEECcCC-ccccccCcccccccCCCCCCcEEEccCCcCCcc----cchhccCCCCCCEEEccccccccc---
Q 039460 53 FTPFQQLESLDLIGN-NIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLRSNRLNGS--- 124 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n-~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~--- 124 (182)
+...+.|++|+|++| .+...--..+...+...++|++|+|++|.+... +...+...+.|++|+|++|.+...
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 345678999999998 775321100011356678899999999988632 334455667899999999988743
Q ss_pred -ccccccccCcCCCCCCCcEEe--cCcccCcc
Q 039460 125 -VVIKVFWFDILDENGLPFLEQ--TANRLSLE 153 (182)
Q Consensus 125 -~p~~~~~l~~l~~~~L~~l~l--~~N~~~~~ 153 (182)
+...+...+ +|++|++ ++|.++..
T Consensus 112 ~l~~~L~~n~-----~L~~L~L~~~~N~i~~~ 138 (185)
T 1io0_A 112 ALVEALQSNT-----SLIELRIDNQSQPLGNN 138 (185)
T ss_dssp HHHHGGGGCS-----SCCEEECCCCSSCCCHH
T ss_pred HHHHHHHhCC-----CceEEEecCCCCCCCHH
Confidence 344444444 7888999 77888844
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.93 E-value=1.1e-06 Score=74.34 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=55.6
Q ss_pred CCCCCCEEECcCCccccccCcccccccC-CCCCCcEEEccCC-cCCcc-cchhccCCCCCCEEEcccccccccccccccc
Q 039460 55 PFQQLESLDLIGNNIVGCVENEGLGRLS-RLSNLKFLRLDFN-SFNNS-IFSSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 55 ~l~~L~~L~Ls~n~l~g~~p~~~~~~~~-~l~~L~~L~L~~n-~l~g~-~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
.+++|++|++++|.+++..+. .+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~----~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLE----LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHH----HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred hCCCCCeEEeeCcEEcHHHHH----HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 456788888888777765444 243 5678888888777 44322 4444456788888888888776544443332
Q ss_pred cCcCCCCCCCcEEecCcc
Q 039460 132 FDILDENGLPFLEQTANR 149 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~N~ 149 (182)
+.. ...+|+.|++++|.
T Consensus 179 ~~~-~~~~L~~L~l~~~~ 195 (594)
T 2p1m_B 179 FPD-TYTSLVSLNISCLA 195 (594)
T ss_dssp SCT-TCCCCCEEECTTCC
T ss_pred Hhh-cCCcCcEEEecccC
Confidence 210 11267777777665
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.90 E-value=2.4e-06 Score=62.39 Aligned_cols=96 Identities=16% Similarity=0.086 Sum_probs=68.3
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcc----cchhccCCCCCCEEEc--cccccccc--
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSL--RSNRLNGS-- 124 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L--~~N~l~g~-- 124 (182)
+...+.|++|+|++|.+...-...+...+...+.|++|+|++|.+... +...+...+.|++|+| ++|.+...
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 344678999999999996431110001345567899999999999743 4566777889999999 88999744
Q ss_pred --ccccccccCcCCCCCCCcEEecCcccCcc
Q 039460 125 --VVIKVFWFDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 125 --~p~~~~~l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
+...+...+ +|++|++++|.+...
T Consensus 141 ~~l~~~L~~n~-----~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 141 MEIANMLEKNT-----TLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHHHHHHHCS-----SCCEEECCCSSHHHH
T ss_pred HHHHHHHHhCC-----CcCEEeccCCCCChH
Confidence 233333334 899999999988643
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.90 E-value=8.8e-05 Score=58.45 Aligned_cols=87 Identities=16% Similarity=0.034 Sum_probs=55.2
Q ss_pred CCCCcEEEccCCcCCcccch-hccCCCCCCEEEcccccccccccccccccCcCCCCCCC-cEEecCcccC---ccccccc
Q 039460 84 LSNLKFLRLDFNSFNNSIFS-SLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLP-FLEQTANRLS---LESIDCI 158 (182)
Q Consensus 84 l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~-~l~l~~N~~~---~~~~~~l 158 (182)
+++|+.++|+.|.+. .+|. .|..+++|+.+++..| ++..-+..|..+. +|+ .+++.+ .++ ...|..+
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~-----~L~~~l~l~~-~l~~I~~~aF~~c 296 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCG-----RLAGTLELPA-SVTAIEFGAFMGC 296 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT-----TCCEEEEECT-TCCEECTTTTTTC
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCCh-----hccEEEEEcc-cceEEchhhhhCC
Confidence 567888888888777 4544 6778888888888877 5533344556666 777 888776 333 2345555
Q ss_pred ccC-------CCCccCcCh-hcccccCCC
Q 039460 159 QDL-------IYLGGNLPR-KTLQQTKIS 179 (182)
Q Consensus 159 ~~L-------~~l~g~ip~-~l~~l~~L~ 179 (182)
.+| +.+.. |+. .|..+++|+
T Consensus 297 ~~L~~l~l~~n~i~~-I~~~aF~~~~~L~ 324 (329)
T 3sb4_A 297 DNLRYVLATGDKITT-LGDELFGNGVPSK 324 (329)
T ss_dssp TTEEEEEECSSCCCE-ECTTTTCTTCCCC
T ss_pred ccCCEEEeCCCccCc-cchhhhcCCcchh
Confidence 555 23332 444 477777765
No 148
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.78 E-value=3.2e-06 Score=71.45 Aligned_cols=63 Identities=16% Similarity=0.236 Sum_probs=35.1
Q ss_pred CCCCcEEEccCCcCCcccchhc-cCCCCCCEEEcccccccccccc-cccccCcCCCCCCCcEEecCcccC
Q 039460 84 LSNLKFLRLDFNSFNNSIFSSL-GGLSSLRCLSLRSNRLNGSVVI-KVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 84 l~~L~~L~L~~n~l~g~~p~~~-~~l~~L~~L~L~~N~l~g~~p~-~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+. .+..++ +|++|++++|.++
T Consensus 455 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~-----~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 455 AKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE-----TMRSLWMSSCSVS 519 (594)
T ss_dssp CTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGG-----GSSEEEEESSCCB
T ss_pred chhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCC-----CCCEEeeeCCCCC
Confidence 5566666666666654433333 4466666666666666433322 222344 6666777666665
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.33 E-value=0.00013 Score=52.89 Aligned_cols=86 Identities=15% Similarity=0.211 Sum_probs=60.7
Q ss_pred CCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCc-CCcccchhccCC----CCCCEEEccccc-cccccccccc
Q 039460 57 QQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNS-FNNSIFSSLGGL----SSLRCLSLRSNR-LNGSVVIKVF 130 (182)
Q Consensus 57 ~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~-l~g~~p~~~~~l----~~L~~L~L~~N~-l~g~~p~~~~ 130 (182)
..|++||++++.++..--. .+..+++|++|+|+++. ++..--..+..+ ++|++|+|+++. ++..--..+.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~----~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD----HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG----GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred ceEeEEeCcCCCccHHHHH----HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 4799999999988653222 47889999999999985 553333345554 479999999874 6643333455
Q ss_pred ccCcCCCCCCCcEEecCcc-cC
Q 039460 131 WFDILDENGLPFLEQTANR-LS 151 (182)
Q Consensus 131 ~l~~l~~~~L~~l~l~~N~-~~ 151 (182)
.++ +|+.|++++.. ++
T Consensus 137 ~~~-----~L~~L~L~~c~~It 153 (176)
T 3e4g_A 137 HFR-----NLKYLFLSDLPGVK 153 (176)
T ss_dssp GCT-----TCCEEEEESCTTCC
T ss_pred cCC-----CCCEEECCCCCCCC
Confidence 555 89999998864 55
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.30 E-value=0.00012 Score=58.91 Aligned_cols=15 Identities=27% Similarity=0.454 Sum_probs=8.0
Q ss_pred CCCCCEEECcCCccc
Q 039460 56 FQQLESLDLIGNNIV 70 (182)
Q Consensus 56 l~~L~~L~Ls~n~l~ 70 (182)
+++|+.|++..+.+.
T Consensus 192 ~~~L~~L~L~~~~l~ 206 (362)
T 2ra8_A 192 RPNLKSLEIISGGLP 206 (362)
T ss_dssp CTTCSEEEEECSBCC
T ss_pred CCCCcEEEEecCCCC
Confidence 455555555555543
No 151
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.05 E-value=0.0017 Score=44.53 Aligned_cols=56 Identities=18% Similarity=0.118 Sum_probs=34.0
Q ss_pred EEECcCCccc-cccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccc
Q 039460 61 SLDLIGNNIV-GCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLN 122 (182)
Q Consensus 61 ~L~Ls~n~l~-g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~ 122 (182)
.++.+++.++ ..+|. .+ -.+|++|+|++|+|+..-+..|..+++|++|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~----~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT----AF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCS----CC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCC----CC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4566666664 23553 11 235777777777777333345667777777777777663
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.79 E-value=0.01 Score=48.18 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=37.9
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRS 118 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~ 118 (182)
...|..+.+|+.++++.|.++. ++.. .|. ..+|+.+.+..+ +...-...|..+++|+.+++..
T Consensus 173 ~~aF~~c~~L~~l~l~~n~l~~-I~~~---aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 173 EDIFYYCYNLKKADLSKTKITK-LPAS---TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp SSTTTTCTTCCEEECTTSCCSE-ECTT---TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred HHHhhCcccCCeeecCCCcceE-echh---hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 4567778888888888887763 5542 333 456666666533 4422223555666666666654
No 153
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.72 E-value=0.0034 Score=42.91 Aligned_cols=57 Identities=14% Similarity=0.016 Sum_probs=43.5
Q ss_pred cEEEccCCcCC-cccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccC
Q 039460 88 KFLRLDFNSFN-NSIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLS 151 (182)
Q Consensus 88 ~~L~L~~n~l~-g~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~ 151 (182)
..++-+++.++ ..+|..+. ++|+.|+|++|+|+..-+..+..++ +|++|++.+|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~-----~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALP-----ALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCT-----TCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhcc-----ccCEEEecCCCee
Confidence 46788888886 36776543 4799999999999943344456666 8999999999887
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.37 E-value=0.00059 Score=54.93 Aligned_cols=91 Identities=22% Similarity=0.199 Sum_probs=64.3
Q ss_pred CCCCCCEEECcC--Cccccc--c---Cccccccc--CCCCCCcEEEccCCcCCcccchhc---cCCCCCCEEEccccccc
Q 039460 55 PFQQLESLDLIG--NNIVGC--V---ENEGLGRL--SRLSNLKFLRLDFNSFNNSIFSSL---GGLSSLRCLSLRSNRLN 122 (182)
Q Consensus 55 ~l~~L~~L~Ls~--n~l~g~--~---p~~~~~~~--~~l~~L~~L~L~~n~l~g~~p~~~---~~l~~L~~L~L~~N~l~ 122 (182)
.+++|++|+|+. |...|. + .. .+ ..+++|++|+|.+|.+....+..+ ..+++|++|+|+.|.+.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~----~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRP----LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGG----GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred cCCCCcEEEEeccccccccchhHHHHHH----HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 689999999864 222221 1 11 12 357899999999998875444433 35789999999999998
Q ss_pred cc----ccccccccCcCCCCCCCcEEecCcccCccc
Q 039460 123 GS----VVIKVFWFDILDENGLPFLEQTANRLSLES 154 (182)
Q Consensus 123 g~----~p~~~~~l~~l~~~~L~~l~l~~N~~~~~~ 154 (182)
+. ++..+..++ +|+.|+++.|.++...
T Consensus 293 d~G~~~L~~~L~~l~-----~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 293 DEGARLLLDHVDKIK-----HLKFINMKYNYLSDEM 323 (362)
T ss_dssp HHHHHHHHTTHHHHT-----TCSEEECCSBBCCHHH
T ss_pred hHHHHHHHhhcccCC-----cceEEECCCCcCCHHH
Confidence 63 444445556 8999999999998553
No 155
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.34 E-value=0.015 Score=47.19 Aligned_cols=63 Identities=16% Similarity=0.128 Sum_probs=29.0
Q ss_pred CCccCCCCCCEEECcCCccc----cccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEcc
Q 039460 51 SLFTPFQQLESLDLIGNNIV----GCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLR 117 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~----g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~ 117 (182)
..|..+++|+.+++.+|.+. ..++.. .|..+++|+.+++.. .+...-...|..+++|+.+.+.
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPY---CLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIP 331 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTT---TTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEEC
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHH---HhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEEC
Confidence 34445555555555554432 013321 455555555555552 2431122345555555555553
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.77 E-value=0.0062 Score=44.00 Aligned_cols=76 Identities=8% Similarity=0.121 Sum_probs=50.1
Q ss_pred CCCcEEEccCCcCCcccchhccCCCCCCEEEccccc-ccccccccccccCcCCCCCCCcEEecCcc-cCcc---cccccc
Q 039460 85 SNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNR-LNGSVVIKVFWFDILDENGLPFLEQTANR-LSLE---SIDCIQ 159 (182)
Q Consensus 85 ~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~-l~g~~p~~~~~l~~l~~~~L~~l~l~~N~-~~~~---~~~~l~ 159 (182)
-.|+.||++++.++..--..+..+++|+.|+|+++. ++..--..+..+.. -..+|++|+++++. +|.. .+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~-~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLEN-LQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHH-HHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhccc-ccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 469999999998865444567899999999999985 55322222332100 00169999999974 8854 344455
Q ss_pred cC
Q 039460 160 DL 161 (182)
Q Consensus 160 ~L 161 (182)
+|
T Consensus 140 ~L 141 (176)
T 3e4g_A 140 NL 141 (176)
T ss_dssp TC
T ss_pred CC
Confidence 55
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.29 E-value=0.076 Score=42.53 Aligned_cols=60 Identities=12% Similarity=0.210 Sum_probs=27.0
Q ss_pred CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccch-hccCCCCCCEEEcc
Q 039460 51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFS-SLGGLSSLRCLSLR 117 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~-~~~~l~~L~~L~L~ 117 (182)
..|..+..|+.+.+..+..+ +... .|..+..|+.+.+.. .+. .++. .|..+.+|+.+.+.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~--I~~~---aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS--IGTG---AFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE--ECTT---TTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECC
T ss_pred ceeeecccccEEecccccce--ecCc---ccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeC
Confidence 34555666666666543322 2221 344455555555532 232 2222 34444555555444
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.82 E-value=0.0084 Score=44.12 Aligned_cols=91 Identities=11% Similarity=0.122 Sum_probs=56.0
Q ss_pred CCCCCEEECcCC-ccccccCcccccccCCCCCCcEEEccCCcCCcc----cchhccCCCCCCEEEccccccccccccccc
Q 039460 56 FQQLESLDLIGN-NIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNS----IFSSLGGLSSLRCLSLRSNRLNGSVVIKVF 130 (182)
Q Consensus 56 l~~L~~L~Ls~n-~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~----~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~ 130 (182)
-+.|++|+|++| .+...--..+...+..=+.|+.|+|++|.+... +...+..-+.|+.|+|+.|.+...--..+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 468999999985 664220000001355567899999999998632 333444557899999999999743222222
Q ss_pred ccCcC-CCCCCCcEEecCc
Q 039460 131 WFDIL-DENGLPFLEQTAN 148 (182)
Q Consensus 131 ~l~~l-~~~~L~~l~l~~N 148 (182)
. .| ....|+.|++++|
T Consensus 120 ~--aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 120 R--STLVTQSIVEFKADNQ 136 (197)
T ss_dssp H--HTTTTCCCSEEECCCC
T ss_pred H--HHhhCCceeEEECCCC
Confidence 1 11 1126889999765
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=94.40 E-value=0.33 Score=38.34 Aligned_cols=83 Identities=13% Similarity=0.111 Sum_probs=37.7
Q ss_pred ccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccc-hhccCCCCCCEEEcccccccccccccccc
Q 039460 53 FTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF-SSLGGLSSLRCLSLRSNRLNGSVVIKVFW 131 (182)
Q Consensus 53 ~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~L~~N~l~g~~p~~~~~ 131 (182)
+..+..|+.+.+..+ ++ .+... .|..+.+|+.+.+..+ +. .++ ..|..+.+|+.+.+..+.++..-...|..
T Consensus 236 f~~~~~L~~i~lp~~-v~-~I~~~---aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~ 308 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VT-SIGSF---LLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD 308 (379)
T ss_dssp TTTCSSCCEEEECTT-CC-EECTT---TTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred ccCCccceEEEcCCC-cc-EeCcc---ccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcC
Confidence 344455555555443 22 12221 3445555555555432 32 222 24555566666666555554222233444
Q ss_pred cCcCCCCCCCcEEecC
Q 039460 132 FDILDENGLPFLEQTA 147 (182)
Q Consensus 132 l~~l~~~~L~~l~l~~ 147 (182)
+. +|+.+.+..
T Consensus 309 c~-----~L~~i~lp~ 319 (379)
T 4h09_A 309 CV-----KLSSVTLPT 319 (379)
T ss_dssp CT-----TCCEEECCT
T ss_pred CC-----CCCEEEcCc
Confidence 44 555555543
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=93.14 E-value=0.35 Score=38.61 Aligned_cols=95 Identities=15% Similarity=0.038 Sum_probs=48.6
Q ss_pred CCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccc-hhccCCCCCCEEEcccccccccccccc
Q 039460 51 SLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF-SSLGGLSSLRCLSLRSNRLNGSVVIKV 129 (182)
Q Consensus 51 ~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~L~~N~l~g~~p~~~ 129 (182)
..|..+..++.+....+.+ +.. .|..+.+|+.+.+..+ +. .++ ..|..+.+|+.+++..+ ++..-...|
T Consensus 270 ~~F~~~~~l~~~~~~~~~i----~~~---~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF 339 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVIV----PEK---TFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSF 339 (394)
T ss_dssp CTTTTCTTCCEEEECSSEE----CTT---TTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTT
T ss_pred cccccccccceeccCceee----ccc---cccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhc
Confidence 3455566666666655432 221 4566667777766543 43 333 35666677777766533 331222344
Q ss_pred cccCcCCCCCCCcEEecCcccC---cccccccccC
Q 039460 130 FWFDILDENGLPFLEQTANRLS---LESIDCIQDL 161 (182)
Q Consensus 130 ~~l~~l~~~~L~~l~l~~N~~~---~~~~~~l~~L 161 (182)
..+. +|+.+.+..| ++ ...|..+.+|
T Consensus 340 ~~c~-----~L~~i~lp~~-l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 340 RGCT-----SLSNINFPLS-LRKIGANAFQGCINL 368 (394)
T ss_dssp TTCT-----TCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred cCCC-----CCCEEEECcc-ccEehHHHhhCCCCC
Confidence 4444 5666666544 22 2245555554
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.96 E-value=0.29 Score=39.07 Aligned_cols=102 Identities=15% Similarity=0.180 Sum_probs=69.8
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccc-hhccCCCCCCEEEccccccccccccc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIF-SSLGGLSSLRCLSLRSNRLNGSVVIK 128 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p-~~~~~l~~L~~L~L~~N~l~g~~p~~ 128 (182)
...|..+..|+.+.+.. .++ .++.. .|..+.+|+.+++..+ ++ .|. ..|..+.+|+.+.+..+ ++..-...
T Consensus 281 ~~aF~~c~~L~~i~l~~-~i~-~I~~~---aF~~c~~L~~i~lp~~-v~-~I~~~aF~~C~~L~~i~ip~s-v~~I~~~a 352 (394)
T 4gt6_A 281 TGAFMNCPALQDIEFSS-RIT-ELPES---VFAGCISLKSIDIPEG-IT-QILDDAFAGCEQLERIAIPSS-VTKIPESA 352 (394)
T ss_dssp TTTTTTCTTCCEEECCT-TCC-EECTT---TTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEECTT-CCBCCGGG
T ss_pred CcccccccccccccCCC-ccc-ccCce---eecCCCCcCEEEeCCc-cc-EehHhHhhCCCCCCEEEECcc-cCEEhHhH
Confidence 45677889999999964 444 36653 7889999999999865 55 443 47889999999999754 54222345
Q ss_pred ccccCcCCCCCCCcEEecCcccCcccccccccCCCC
Q 039460 129 VFWFDILDENGLPFLEQTANRLSLESIDCIQDLIYL 164 (182)
Q Consensus 129 ~~~l~~l~~~~L~~l~l~~N~~~~~~~~~l~~L~~l 164 (182)
|..+. +|+.+++.++......+....+|..+
T Consensus 353 F~~C~-----~L~~i~~~~~~~~~~~~~~~~~L~~i 383 (394)
T 4gt6_A 353 FSNCT-----ALNNIEYSGSRSQWNAISTDSGLQNL 383 (394)
T ss_dssp GTTCT-----TCCEEEESSCHHHHHTCBCCCCC---
T ss_pred hhCCC-----CCCEEEECCceeehhhhhccCCCCEE
Confidence 66667 89999998876554444444454333
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.04 E-value=0.57 Score=36.98 Aligned_cols=86 Identities=15% Similarity=0.115 Sum_probs=60.1
Q ss_pred CCCccCCCCCCEEECcCCccccccCcccccccCCCCCCcEEEccCCcCCcccchhccCCCCCCEEEccccccccccc-cc
Q 039460 50 CSLFTPFQQLESLDLIGNNIVGCVENEGLGRLSRLSNLKFLRLDFNSFNNSIFSSLGGLSSLRCLSLRSNRLNGSVV-IK 128 (182)
Q Consensus 50 ~~~~~~l~~L~~L~Ls~n~l~g~~p~~~~~~~~~l~~L~~L~L~~n~l~g~~p~~~~~l~~L~~L~L~~N~l~g~~p-~~ 128 (182)
...|..+..|+.+.+..+ +. .++.. .|..+.+|+.+.+..+.+...-...|..+.+|+.+.+..+ ++ .|. ..
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~-~i~~~---aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~a 328 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VK-TVPYL---LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LK-TIQVYA 328 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CS-EECTT---TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CC-EECTTT
T ss_pred ccccceeehhcccccccc-ce-ecccc---ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-cc-EEHHHH
Confidence 345667888999988654 33 34542 6888999999999988887333457889999999999754 44 333 45
Q ss_pred ccccCcCCCCCCCcEEecC
Q 039460 129 VFWFDILDENGLPFLEQTA 147 (182)
Q Consensus 129 ~~~l~~l~~~~L~~l~l~~ 147 (182)
|..+. +|+.+.+..
T Consensus 329 F~~C~-----~L~~i~ip~ 342 (379)
T 4h09_A 329 FKNCK-----ALSTISYPK 342 (379)
T ss_dssp TTTCT-----TCCCCCCCT
T ss_pred hhCCC-----CCCEEEECC
Confidence 55666 666666644
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.19 E-value=0.75 Score=36.63 Aligned_cols=13 Identities=38% Similarity=0.309 Sum_probs=6.2
Q ss_pred ccCCCCCCEEEcc
Q 039460 105 LGGLSSLRCLSLR 117 (182)
Q Consensus 105 ~~~l~~L~~L~L~ 117 (182)
|..+.+|+.+.+.
T Consensus 293 F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 293 FYGCSSLTEVKLL 305 (394)
T ss_dssp TTTCTTCCEEEEC
T ss_pred ccccccccccccc
Confidence 4444455555443
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.81 E-value=0.21 Score=36.58 Aligned_cols=72 Identities=15% Similarity=0.116 Sum_probs=48.8
Q ss_pred cCCCCCCcEEEccCC-cCCc----ccchhccCCCCCCEEEcccccccccccccccccCcCCCCCCCcEEecCcccCcc
Q 039460 81 LSRLSNLKFLRLDFN-SFNN----SIFSSLGGLSSLRCLSLRSNRLNGSVVIKVFWFDILDENGLPFLEQTANRLSLE 153 (182)
Q Consensus 81 ~~~l~~L~~L~L~~n-~l~g----~~p~~~~~l~~L~~L~L~~N~l~g~~p~~~~~l~~l~~~~L~~l~l~~N~~~~~ 153 (182)
+..-+.|++|+|++| .+.. .+-..+..-..|+.|+|++|.+...--..+...-. ....|+.|+++.|.++..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~-~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIE-TSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHH-HCSSCCEEECCSSBCCHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHh-cCCccCeEecCCCcCCHH
Confidence 445678999999985 6642 23445667789999999999997332222221100 113899999999999944
No 165
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=32.41 E-value=15 Score=16.21 Aligned_cols=10 Identities=30% Similarity=1.119 Sum_probs=7.6
Q ss_pred CCCccccceE
Q 039460 35 SNCCQWEAVE 44 (182)
Q Consensus 35 ~~~c~w~gv~ 44 (182)
...|+|.|..
T Consensus 5 dgacswrgle 14 (23)
T 3ox7_P 5 DGACSWRGLE 14 (26)
T ss_pred Ccccccccch
Confidence 4579999865
Done!