BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 039461
(76 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CFE|A Chain A, P14a, Nmr, 20 Structures
Length = 135
Score = 106 bits (264), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/76 (68%), Positives = 59/76 (77%), Gaps = 2/76 (2%)
Query: 1 GDLTGTAAVKLWVDERPKYNYNSNTCVGGE-CRHYTQVVWRNSVRLGCARVKCNNNRGTF 59
GD TG AAV+LWV ERP YNY +N CVGG+ CRHYTQVVWRNSVRLGC R +CNN F
Sbjct: 60 GDFTGRAAVQLWVSERPSYNYATNQCVGGKKCRHYTQVVWRNSVRLGCGRARCNNGW-WF 118
Query: 60 VICSYDPPGNVAGKRP 75
+ C+YDP GN G+RP
Sbjct: 119 ISCNYDPVGNWIGQRP 134
>pdb|1U53|A Chain A, Novel X-Ray Structure Of Na-Asp-2, A Pr-1 Protein From The
Nematode Parasite Necator Americanus And A Vaccine
Antigen For Human Hookworm Infection
Length = 196
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 33 HYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPGNVAGKRPY 76
HYTQ+VW+ +V+LGC C+N +V+C Y P GN+ GK Y
Sbjct: 134 HYTQMVWQETVKLGCYVEACSNM--CYVVCQYGPAGNMMGKDIY 175
>pdb|3Q2R|A Chain A, Crystal Structure Of Sglipr1 Soaked With Zinc Chloride
pdb|3Q2U|A Chain A, Structure Of Human Glioma Pathogenesis-Related Protein 1
Reveals Unique Loops And Surface Motifs
Length = 205
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 8/74 (10%)
Query: 3 LTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNN-------N 55
+ ++A+ W DE Y++ + C C HYTQVVW +S ++GCA C +
Sbjct: 93 FSVSSAITNWYDEIQDYDFKTRIC-KKVCGHYTQVVWADSYKVGCAVQFCPKVSGFDALS 151
Query: 56 RGTFVICSYDPPGN 69
G IC+Y P GN
Sbjct: 152 NGAHFICNYGPGGN 165
>pdb|1XTA|A Chain A, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
pdb|1XTA|B Chain B, Crystal Structure Of Natrin, A Snake Venom Crisp From
Taiwan Cobra (Naja Atra)
Length = 221
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 4 TGTAAVKLWVDERPKYNYNSNTCVGGECR-HYTQVVWRNSVRLGCARVKCNNNRGT-FVI 61
T T + LW DE + Y G HYTQ+VW + R GCA C ++ + F +
Sbjct: 85 TWTEIIHLWHDEYKNFVYGVGASPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYV 144
Query: 62 CSYDPPGNVAGK 73
C Y P GN GK
Sbjct: 145 CQYCPSGNFQGK 156
>pdb|1RC9|A Chain A, Crystal Structure Of Stecrisp, A Member Of Crisp Family
From Trimeresurus Stejnegeri Refined At 1.6 Angstroms
Resolution: Structual Relationship Of The Two Domains
Length = 221
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 3 LTGTAAVKLWVDERPKYNY----NSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGT 58
+ T + W DE + Y + V G HYTQ+VW S R+GCA C ++ +
Sbjct: 84 MKWTDIIHAWHDEYKDFKYGVGADPPNAVTG---HYTQIVWYKSYRIGCAAAYCPSSPYS 140
Query: 59 -FVICSYDPPGNVAGK 73
F +C Y P GN GK
Sbjct: 141 YFFVCQYCPAGNFIGK 156
>pdb|1XX5|A Chain A, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|B Chain B, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|1XX5|C Chain C, Crystal Structure Of Natrin From Naja Atra Snake Venom
pdb|2GIZ|A Chain A, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|2GIZ|B Chain B, Structural And Functional Analysis Of Natrin, A Member Of
Crisp-3 Family Blocks A Variety Of Ion Channels
pdb|3MZ8|A Chain A, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
pdb|3MZ8|B Chain B, Crystal Structure Of Zinc-Bound Natrin From Naja Atra
Length = 221
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 4 TGTAAVKLWVDERPKYNYNSNTCVGGECR-HYTQVVWRNSVRLGCARVKCNNNRGT-FVI 61
T T + LW DE + Y G HYTQ+VW + R GCA C ++ + F +
Sbjct: 85 TWTEIIHLWHDEYKNFVYGVGANPPGSVTGHYTQIVWYQTYRAGCAVSYCPSSAWSYFYV 144
Query: 62 CSYDPPGNVAGK 73
C Y P GN GK
Sbjct: 145 CQYCPSGNFQGK 156
>pdb|1WVR|A Chain A, Crystal Structure Of A Crisp Family Ca-Channel Blocker
Derived From Snake Venom
Length = 221
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 6 TAAVKLWVDERPKYNYN-----SNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGT-F 59
T + W E + Y S+ +G HYTQ+VW S R GCA C +++ + F
Sbjct: 87 TDIIHAWHGEYKDFKYGVGAVPSDAVIG----HYTQIVWYKSYRAGCAAAYCPSSKYSYF 142
Query: 60 VICSYDPPGNVAGK 73
+C Y P GN+ GK
Sbjct: 143 YVCQYCPAGNIIGK 156
>pdb|1QNX|A Chain A, Ves V 5, An Allergen From Vespula Vulgaris Venom
Length = 209
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 3 LTGTAA---------VKLWVDE----RPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCAR 49
LTG+ A VK+W DE PK ++ N + + HYTQ+VW N+ +GC
Sbjct: 120 LTGSTAAKYDDPVKLVKMWEDEVKDYNPKKKFSGNDFL--KTGHYTQMVWANTKEVGCGS 177
Query: 50 VKCNNNR--GTFVICSYDPPGNVAGKRPY 76
+K + +++C+Y P GN + Y
Sbjct: 178 IKYIQEKWHKHYLVCNYGPSGNFKNEELY 206
>pdb|2DDA|A Chain A, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|B Chain B, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|C Chain C, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
pdb|2DDA|D Chain D, Crystal Structure Of Pseudechetoxin From Pseudechis
Australis
Length = 211
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 6 TAAVKLWVDERPKYNYNSNTCVGGECR-HYTQVVWRNSVRLGCARVKCNNNRGTFVICSY 64
+ V+ W DE + Y G HYTQVVW S +GCA KC++++ +V C Y
Sbjct: 79 SGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSYLIGCASAKCSSSKYLYV-CQY 137
Query: 65 DPPGNVAG 72
P GN+ G
Sbjct: 138 CPAGNIRG 145
>pdb|1SMB|A Chain A, Crystal Structure Of Golgi-Associated Pr-1 Protein
Length = 154
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 2 DLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVI 61
D TG W E YN+ G H+T +VW+N+ ++G + ++ +FV+
Sbjct: 73 DQTGKEVADRWYSEIKNYNFQQPGFTSG-TGHFTAMVWKNTKKMGVGKASASDG-SSFVV 130
Query: 62 CSYDPPGNV 70
Y P GNV
Sbjct: 131 ARYFPAGNV 139
>pdb|2DDB|A Chain A, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|B Chain B, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|C Chain C, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2DDB|D Chain D, Crystal Structure Of Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|A Chain A, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|B Chain B, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|C Chain C, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
pdb|2EPF|D Chain D, Crystal Structure Of Zinc-Bound Pseudecin From Pseudechis
Porphyriacus
Length = 210
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 6 TAAVKLWVDERPKYNYNSNTCVGGECR-HYTQVVWRNSVRLGCARVKCNNNRGTFVICSY 64
+ V+ W DE + Y G HYTQVVW S +GCA KC++++ +V C Y
Sbjct: 78 SGVVQAWYDEIKNFVYGIGAKPPGSVIGHYTQVVWYKSHLIGCASAKCSSSKYLYV-CQY 136
Query: 65 DPPGNVAG 72
P GN+ G
Sbjct: 137 CPAGNIRG 144
>pdb|4AIW|A Chain A, Gapr-1 With Bound Inositol Hexakisphosphate
Length = 154
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 2 DLTGTAAVKLWVDERPKYNYNSNTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVI 61
D TG W E YN+ G H+T +VW+N+ ++G + ++ +FV+
Sbjct: 73 DQTGKEVADRWYSEIKNYNFQQPGFTSG-TGHFTAMVWKNTKKMGVGKASASDG-SSFVV 130
Query: 62 CSYDPPGNV 70
Y P GNV
Sbjct: 131 ARYFPAGNV 139
>pdb|3NT8|A Chain A, Crystal Structure Of Na-Asp-1
pdb|3NT8|B Chain B, Crystal Structure Of Na-Asp-1
Length = 424
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 8 AVKLWVDERPKYNYNSNTCV--------GGECRHYTQVVWRNSVRLGCARVKCNNNRGTF 59
A +LW +E +Y + + + HYTQ+ W + +LGCA V CN+ TF
Sbjct: 325 ASQLWWNELKEYGVGPSNVLTTALWNRPNMQIGHYTQMAWDTTYKLGCAVVFCNDF--TF 382
Query: 60 VICSYDPPGNVAGKRPY 76
+C Y P GN G Y
Sbjct: 383 GVCQYGPGGNYMGHVIY 399
>pdb|2VZN|A Chain A, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
pdb|2VZN|B Chain B, Crystal Structure Of The Major Allergen From Fire Ant
Venom, Sol I 3
Length = 218
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 4 TGTAAVKLWVDERPKYN------YNSNTCVGGECRHYTQVVWRNSVRLGCARV---KCNN 54
T + LW +E ++ + S+ + + HYTQ+VW + ++GC R+ + +N
Sbjct: 127 TPNEMILLWYNEVKDFDNRWISSFPSDDNILMKVGHYTQIVWAKTTKIGCGRIMFKEPDN 186
Query: 55 NRGTFVICSYDPPGNVAGKRPY 76
+++C+Y P GNV G Y
Sbjct: 187 WTKHYLVCNYGPAGNVLGAPIY 208
>pdb|4AGX|C Chain C, Coxsackievirus A7 (Cav7) Full Capsid Reconstruction At
8.23 Angstrom Resolution.
pdb|4AGY|C Chain C, Coxsackievirus A7 (Cav7) Empty Capsid Reconstruction At
6.09 Angstrom Resolution
Length = 202
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 24 NTCVGGECRHYTQVVWRNSVRLGCARVKCNNNRGTFVICSYDPPG 68
+T VG CR+YTQ W S+++ G +I +Y PPG
Sbjct: 58 STMVGQLCRYYTQ--WSGSLKITFMFTGSFMATGKMLI-AYTPPG 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.470
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,710,981
Number of Sequences: 62578
Number of extensions: 90771
Number of successful extensions: 116
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 16
length of query: 76
length of database: 14,973,337
effective HSP length: 45
effective length of query: 31
effective length of database: 12,157,327
effective search space: 376877137
effective search space used: 376877137
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)